Citrus Sinensis ID: 017249

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-----
Protein Sequence
MGHEENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPSA
Secondary Structure (PSIPRED)
cccccccccccccccHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHcccccHHHHHHHHHHHHHHccccccHHHHHHHccccHHHHHHHccccHHHHHHHHHHHHHHHccccccHHHHHHccHHHHHHHHccccHHHHHHHHHHHHHHccccccHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccccHccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHccccHHHHHHHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHccccHHHHHHHHHcccHHHHHHHHHHHHHHHHccHcHHHHHHccccHHHHHHHHcccccccHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Coil and Loop (DISEMBL)
mgheenknkaatDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERnkvkiatagaippLVELLKFQNGTLRELAAAAILTLsaaapnkpaiaasgaAPLLVQILHSGSVQGRVDAVTALHYLStckensspildatavpplinLLKDCKKYSKFAEKATALLEILSSseegriaitnsdggILTLVETvedgslvsTQHAVGALLSLCQSCRDKYRQLILKegaipgllrltvegTFEAQERARTLLDLLRdtpqekrlSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRaassapskipsa
Flexible Loop (DISEMBL)
mgheenknkaatdqeeEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKvvkksslktrsefaaagvvqpLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKiatagaipplVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCkensspildaTAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLldllrdtpqekrlsssvlEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIqqraassapskipsa
Low Complexity Region (SEG)
MGHEENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRElaaaailtlsaaapnkpaiaasgaapLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERArtlldllrdtPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRaassapskipsa
Disordered region (IsUnstruct)
********************************KLINGDLETKIEAARDIRKVVK***LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR**********SVLEKIVYDIAARVDG******************************************
Disordered Region (DISOPRED)
************************ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR***********************************RLLQDMV**********************I***
Disordered Region (DISEMBL)
********************QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSM******************
Disordered Region (DISPRO)
****************EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ********LEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASS********
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGHEENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPSA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	375	2.2.26 [Sep-21-2011]
O22193	826	U-box domain-containing p	no	no	0.733	0.332	0.361	3e-32
Q8GWV5	760	U-box domain-containing p	no	no	0.728	0.359	0.380	1e-31
Q5XEZ8	707	U-box domain-containing p	no	no	0.725	0.384	0.366	6e-30
Q9SNC6	660	U-box domain-containing p	no	no	0.725	0.412	0.363	5e-27
Q8VZ40	632	U-box domain-containing p	no	no	0.738	0.438	0.373	6e-26
Q9CAG5	782	U-box domain-containing p	no	no	0.826	0.396	0.321	2e-24
Q9C9A6	628	U-box domain-containing p	no	no	0.746	0.445	0.333	3e-24
Q8GUG9	612	U-box domain-containing p	no	no	0.762	0.467	0.307	6e-24
O48700	771	U-box domain-containing p	no	no	0.698	0.339	0.315	7e-22
Q9ZV31	654	U-box domain-containing p	no	no	0.762	0.437	0.315	9e-22

>sp|O22193|PUB4_ARATH U-box domain-containing protein 4 OS=Arabidopsis thaliana GN=PUB4 PE=1 SV=3

 Score =  139 bits (351), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/282 (36%), Positives = 167/282 (59%), Gaps = 7/282 (2%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           +++L ++L +  L+T+ +A  ++R ++ K ++  R     +G +  LV +L S +    E
Sbjct: 543 VKKLVEELKSSSLDTQRQATAELR-LLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQE 601

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146
           +++ ALLNL++ N+ NK  IA AGAI PL+ +L+  +   +E +AA + +LS    NK  
Sbjct: 602 NAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIK 660

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK 206
           I  SGA   LV +L +G+ +G+ DA TAL  LS  +EN + I+ + AV  LI+L+     
Sbjct: 661 IGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA-- 718

Query: 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266
            +   +KA A+L  L++  EGR AI   +GGI  LVE VE GS    ++A  ALL L  +
Sbjct: 719 -AGMVDKAVAVLANLATIPEGRNAI-GQEGGIPLLVEVVELGSARGKENAAAALLQLSTN 776

Query: 267 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308
              ++  ++L+EGA+P L+ L+  GT  A+E+A+ LL   R+
Sbjct: 777 S-GRFCNMVLQEGAVPPLVALSQSGTPRAREKAQALLSYFRN 817

Functions as an E3 ubiquitin ligase.
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8GWV5|PUB3_ARATH U-box domain-containing protein 3 OS=Arabidopsis thaliana GN=PUB3 PE=2 SV=2

 Score =  137 bits (345), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 107/281 (38%), Positives = 157/281 (55%), Gaps = 8/281 (2%)

Query: 29  ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
           +L + L +G  + K  AA +IR +   +S++ R      G + PL+ +L S      E +
Sbjct: 476 KLVEDLKSGSNKVKTAAAAEIRHLTI-NSIENRVHIGRCGAITPLLSLLYSEEKLTQEHA 534

Query: 89  LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA 148
           + ALLNL++ +E NK  I   GAI PLV +L   N   +E +AA++ +LS    N+  I 
Sbjct: 535 VTALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIG 593

Query: 149 ASGAA-PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY 207
            S AA   LV +L  G+ +G+ DA +AL  LS   +N + I+ A AV  L+ LL      
Sbjct: 594 QSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLD---PD 650

Query: 208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267
            +  +KA ALL  LS+  EGR AI   +GGI  LVETV+ GS    ++A   LL LC + 
Sbjct: 651 LEMVDKAVALLANLSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLN- 708

Query: 268 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308
             K+  L+L+EGAIP L+ L+  GT  A+E+A+ LL   R+
Sbjct: 709 SPKFCTLVLQEGAIPPLVALSQSGTQRAKEKAQQLLSHFRN 749

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XEZ8|PUB2_ARATH U-box domain-containing protein 2 OS=Arabidopsis thaliana GN=PUB2 PE=2 SV=1

 Score =  132 bits (331), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 104/284 (36%), Positives = 155/284 (54%), Gaps = 12/284 (4%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           +++L D L +  L+T+ EA   IR ++ ++S   R   A    +  LV +L S +     
Sbjct: 423 VKKLIDDLKSSSLDTQREATARIR-ILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQA 481

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREL---AAAAILTLSAAAPN 143
            ++  LLNL++ N+ NK  IA +GAI PL+ +LK   G L E    +AA + +LS     
Sbjct: 482 DAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEY 538

Query: 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
           K  I  +GA   LV +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+  
Sbjct: 539 KTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDP 598

Query: 204 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
                   EKA  +L  L++  EG+IAI   +GGI  LVE VE GS    ++A  ALL L
Sbjct: 599 A---FGMVEKAVVVLANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQL 654

Query: 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR 307
           C +   K+   +++EG IP L+ LT  GT   +E+A+ LL   +
Sbjct: 655 C-THSPKFCNNVIREGVIPPLVALTKSGTARGKEKAQNLLKYFK 697

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9SNC6|PUB13_ARATH U-box domain-containing protein 13 OS=Arabidopsis thaliana GN=PUB13 PE=1 SV=1

 Score =  122 bits (306), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 101/278 (36%), Positives = 152/278 (54%), Gaps = 6/278 (2%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           IE+L  +L  G+ E +  AA +IR + K+++   R   A AG +  LV +L +P+    E
Sbjct: 354 IEDLMWRLAYGNPEDQRSAAGEIRLLAKRNA-DNRVAIAEAGAIPLLVGLLSTPDSRIQE 412

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146
            S+ ALLNL++  E NK  I +AGAIP +V++LK  +   RE AAA + +LS    NK  
Sbjct: 413 HSVTALLNLSI-CENNKGAIVSAGAIPGIVQVLKKGSMEARENAAATLFSLSVIDENKVT 471

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK 206
           I A GA P LV +L+ G+ +G+ DA TAL  L   + N    + A  +P L  LL +   
Sbjct: 472 IGALGAIPPLVVLLNEGTQRGKKDAATALFNLCIYQGNKGKAIRAGVIPTLTRLLTE--P 529

Query: 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266
            S   ++A A+L ILSS  EG+  I +SD  + +LVE +  GS  + ++A   L+ LC S
Sbjct: 530 GSGMVDEALAILAILSSHPEGKAIIGSSD-AVPSLVEFIRTGSPRNRENAAAVLVHLC-S 587

Query: 267 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 304
              ++     K G +  L+ L   GT   + +A  LL+
Sbjct: 588 GDPQHLVEAQKLGLMGPLIDLAGNGTDRGKRKAAQLLE 625

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8VZ40|PUB14_ARATH U-box domain-containing protein 14 OS=Arabidopsis thaliana GN=PUB14 PE=1 SV=1

 Score =  118 bits (296), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 108/289 (37%), Positives = 161/289 (55%), Gaps = 12/289 (4%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
           +  +  L +KL NG  E +  AA ++R + K++ +  R   A AG +  LV +L SP+  
Sbjct: 344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRN-VDNRVCIAEAGAIPLLVELLSSPDPR 402

Query: 84  AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTL--RELAAAAILTLSAAA 141
             E S+ ALLNL++ NE NK  I  AGAI  +VE+LK  NG++  RE AAA + +LS   
Sbjct: 403 TQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLK--NGSMEARENAAATLFSLSVID 459

Query: 142 PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL 201
            NK AI A+GA   L+ +L  G+ +G+ DA TA+  L   + N S  +    V PL  LL
Sbjct: 460 ENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLL 519

Query: 202 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261
           KD        ++A A+L ILS+++EG+ AI  ++  I  LVE +  GS  + ++A   L 
Sbjct: 520 KDAG--GGMVDEALAILAILSTNQEGKTAIAEAE-SIPVLVEIIRTGSPRNRENAAAILW 576

Query: 262 SLCQSCRDKYRQLILKE-GAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309
            LC    +  R  + +E GA   L  LT  GT  A+ +A +LL+L++ T
Sbjct: 577 YLCIG--NIERLNVAREVGADVALKELTENGTDRAKRKAASLLELIQQT 623

Functions as an E3 ubiquitin ligase with specific E2 ubiquitin-conjugating enzymes. Undergoes auto-ubiquitination.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9CAG5|PUB7_ARATH U-box domain-containing protein 7 OS=Arabidopsis thaliana GN=PUB7 PE=2 SV=1

 Score =  113 bits (283), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 108/336 (32%), Positives = 167/336 (49%), Gaps = 26/336 (7%)

Query: 39  LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP----NLDAIESSLLALLN 94
           LE K +    IR ++K    + R    A G V+ L+  L S     N  A +S  +AL N
Sbjct: 438 LEKKCKVVEKIRLLLKDDE-EARIFMGANGFVEALLRFLGSAVDDNNAAAQDSGAMALFN 496

Query: 95  LAVRNERNKVKIATAGAIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGA 152
           LAV N RNK  + T+G I  L +++     +G+    A A  L LS     K  I +S A
Sbjct: 497 LAVNNNRNKELMLTSGVIRLLEKMISSAESHGS----ATALYLNLSCLDEAKSVIGSSQA 552

Query: 153 APLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFA 211
            P LVQ+L      Q ++DA+ AL+ LST   N   +L +  +  L  LL    + + + 
Sbjct: 553 VPFLVQLLQKEIETQCKLDALHALYNLSTYSPNIPALLSSNIIKSLQGLLASTGE-NLWI 611

Query: 212 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 271
           EK+ A+L  L+SS+EG+    +S G I +L   ++ G     + AV  LL LC   R+  
Sbjct: 612 EKSLAVLLNLASSQEGKDEAVSSQGMISSLATVLDMGDTTEQEQAVSCLLILCNG-RESC 670

Query: 272 RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR- 330
            Q++L+EG IP L+ ++V GT   +E+++ LL L R+  Q++   SS  ++      AR 
Sbjct: 671 IQMVLQEGVIPSLVSISVNGTPRGREKSQKLLMLFREERQQRDQPSSNRDEPPQKEPARK 730

Query: 331 -------VDGADKAAETAKRLLQDMVQRSMELSMTR 359
                  V G+  A+ +    +QD   R +  SM+R
Sbjct: 731 SLSAPLSVHGSTPASAS----VQDYEPRVLSKSMSR 762

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9C9A6|PUB10_ARATH U-box domain-containing protein 10 OS=Arabidopsis thaliana GN=PUB10 PE=2 SV=1

 Score =  113 bits (282), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 96/288 (33%), Positives = 160/288 (55%), Gaps = 8/288 (2%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAI 85
           I  L  KL +  +E +  A  +IR + K+S+   R   A AG +  LV +L S  + +  
Sbjct: 343 IRALVCKLSSQSIEDRRTAVSEIRSLSKRST-DNRILIAEAGAIPVLVKLLTSDGDTETQ 401

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP 145
           E+++  +LNL++  E NK  I  AGA+  +V +L+  +   RE AAA + +LS A  NK 
Sbjct: 402 ENAVTCILNLSIY-EHNKELIMLAGAVTSIVLVLRAGSMEARENAAATLFSLSLADENKI 460

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 205
            I ASGA   LV +L  GSV+G+ DA TAL  L   + N    + A  V PL+ +L D  
Sbjct: 461 IIGASGAIMALVDLLQYGSVRGKKDAATALFNLCIYQGNKGRAVRAGIVKPLVKMLTDSS 520

Query: 206 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265
              + A++A  +L +L+S++  + AI  ++  I  L++ ++     + ++A   LL LC+
Sbjct: 521 S-ERMADEALTILSVLASNQVAKTAILRAN-AIPPLIDCLQKDQPRNRENAAAILLCLCK 578

Query: 266 SCRDKYRQL-ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312
             RD  + + I + GA+  L+ L+ +GT  A+ +A +LL+LLR + ++
Sbjct: 579 --RDTEKLISIGRLGAVVPLMELSRDGTERAKRKANSLLELLRKSSRK 624

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8GUG9|PUB11_ARATH U-box domain-containing protein 11 OS=Arabidopsis thaliana GN=PUB11 PE=2 SV=2

 Score =  112 bits (279), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 90/293 (30%), Positives = 158/293 (53%), Gaps = 7/293 (2%)

Query: 20  NQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS 79
           N    ++I  L  +L +   E +  A  +IR + K+S+   R   A AG +  LV +L S
Sbjct: 326 NSGDMSVIRALVQRLSSRSTEDRRNAVSEIRSLSKRST-DNRILIAEAGAIPVLVNLLTS 384

Query: 80  PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139
            ++   E+++  +LNL++  E NK  I  AGA+  +V++L+      RE AAA + +LS 
Sbjct: 385 EDVATQENAITCVLNLSIY-ENNKELIMFAGAVTSIVQVLRAGTMEARENAAATLFSLSL 443

Query: 140 AAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLIN 199
           A  NK  I  SGA P LV +L +G+ +G+ DA TAL  L     N    + A  V  L+ 
Sbjct: 444 ADENKIIIGGSGAIPALVDLLENGTPRGKKDAATALFNLCIYHGNKGRAVRAGIVTALVK 503

Query: 200 LLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA 259
           +L D  ++ +  ++A  +L +L+++++ + AI  ++  +  L+  ++     + ++A   
Sbjct: 504 MLSDSTRH-RMVDEALTILSVLANNQDAKSAIVKANT-LPALIGILQTDQTRNRENAAAI 561

Query: 260 LLSLCQSCRDKYRQLIL-KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ 311
           LLSLC+  RD  + + + + GA+  L+ L+  GT   + +A +LL+LLR   Q
Sbjct: 562 LLSLCK--RDTEKLITIGRLGAVVPLMDLSKNGTERGKRKAISLLELLRKACQ 612

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O48700|PUB6_ARATH U-box domain-containing protein 6 OS=Arabidopsis thaliana GN=PUB6 PE=2 SV=2

 Score =  105 bits (261), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 88/279 (31%), Positives = 139/279 (49%), Gaps = 17/279 (6%)

Query: 38  DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP----NLDAIESSLLALL 93
           DL  K +   ++R ++K +  + R    A G V+  +  L S     N  A E+  +AL 
Sbjct: 437 DLAKKCKVVENVRILLKDNE-EARILMGANGFVEAFLQFLESAVHDNNAAAQETGAMALF 495

Query: 94  NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA 153
           NLAV N RNK  + T+G IP L +++       +  A A  L LS     KP I +S A 
Sbjct: 496 NLAVNNNRNKELMLTSGVIPLLEKMISCSQS--QGPATALYLNLSCLEKAKPVIGSSQAV 553

Query: 154 PLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE 212
              V +L      Q ++DA+ AL+ LST   N   +L +  +  L  L         + E
Sbjct: 554 SFFVNLLLQDTKTQCKLDALHALYNLSTYSPNIPTLLSSNIIKSLQVLASTGNHL--WIE 611

Query: 213 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC---QSCRD 269
           K+ A+L  L+SS EG+  +  + G I TL   ++ G  V  + AV  L+ LC   +SC  
Sbjct: 612 KSLAVLLNLASSREGKEEMITTQGMISTLATVLDTGDTVEQEQAVSCLVILCTGSESC-- 669

Query: 270 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308
              Q++L+EG IP L+ ++V G+   +++++ LL L R+
Sbjct: 670 --IQMVLQEGVIPSLVSISVNGSPRGRDKSQKLLMLFRE 706

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9ZV31|PUB12_ARATH U-box domain-containing protein 12 OS=Arabidopsis thaliana GN=PUB12 PE=2 SV=1

 Score =  104 bits (260), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 95/301 (31%), Positives = 158/301 (52%), Gaps = 15/301 (4%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAI 85
           IEEL  KL +   E +  AA +IR + K+++   R   AA+G +  LV L+ +S +    
Sbjct: 357 IEELLLKLTSQQPEDRRSAAGEIRLLAKQNN-HNRVAIAASGAIPLLVNLLTISNDSRTQ 415

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP 145
           E ++ ++LNL++  E     + ++GA+P +V +L+  +   RE AAA + +LS    NK 
Sbjct: 416 EHAVTSILNLSICQENKGKIVYSSGAVPGIVHVLQKGSMEARENAAATLFSLSVIDENKV 475

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 205
            I A+GA P LV +L  GS +G+ DA TAL  L   + N    + A  VP L+ LL + +
Sbjct: 476 TIGAAGAIPPLVTLLSEGSQRGKKDAATALFNLCIFQGNKGKAVRAGLVPVLMRLLTEPE 535

Query: 206 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265
             S   +++ ++L ILSS  +G+  +  +D  +  LV+ +  GS  + +++   L+ LC 
Sbjct: 536 --SGMVDESLSILAILSSHPDGKSEVGAAD-AVPVLVDFIRSGSPRNKENSAAVLVHLC- 591

Query: 266 SCRDKYRQLILKEGAIPGLLRLTVE----GTFEAQERARTLLDLL-RDTPQEKRLSSSVL 320
                + Q  L E    G++ L +E    GT   + +A  LL+   R   Q+K+ S   L
Sbjct: 592 ----SWNQQHLIEAQKLGIMDLLIEMAENGTDRGKRKAAQLLNRFSRFNDQQKQHSGLGL 647

Query: 321 E 321
           E
Sbjct: 648 E 648

Functions as an E3 ubiquitin ligase.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
224129230	379	predicted protein [Populus trichocarpa]	0.976	0.965	0.822	1e-165
225447490	376	PREDICTED: U-box domain-containing prote	0.96	0.957	0.772	1e-152
296085056	367	unnamed protein product [Vitis vinifera]	0.96	0.980	0.772	1e-152
255582882	391	Vacuolar protein, putative [Ricinus comm	0.946	0.907	0.776	1e-144
356553040	379	PREDICTED: U-box domain-containing prote	0.946	0.936	0.788	1e-144
356500835	381	PREDICTED: U-box domain-containing prote	0.944	0.929	0.785	1e-140
357490509	350	U-box domain-containing protein [Medicag	0.856	0.917	0.751	1e-125
15235456	402	armadillo/beta-catenin-like repeat-conta	0.914	0.853	0.684	1e-120
297790862	394	armadillo/beta-catenin repeat family pro	0.925	0.880	0.674	1e-118
449444466	366	PREDICTED: U-box domain-containing prote	0.912	0.934	0.703	1e-115

>gi|224129230|ref|XP_002320533.1| predicted protein [Populus trichocarpa] gi|222861306|gb|EEE98848.1| predicted protein [Populus trichocarpa]

 Score =  588 bits (1517), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 301/366 (82%), Positives = 335/366 (91%)

Query: 9   KAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAG 68
           K +++QEEEAWN RKQ  I ELS++L++GDL+T+IEAARDIRK+V+KSS KTR++ AAAG
Sbjct: 13  KVSSNQEEEAWNLRKQTQIVELSERLMSGDLKTQIEAARDIRKLVRKSSAKTRTKLAAAG 72

Query: 69  VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRE 128
           V+QPL+ ML+SPN DA  +SLLALLNLAVRNERNKVKI TAGA+PPLVELLK QNG+LRE
Sbjct: 73  VIQPLIFMLLSPNFDARHASLLALLNLAVRNERNKVKIVTAGAVPPLVELLKLQNGSLRE 132

Query: 129 LAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 188
           LAAA+ILTLSAA PNKP IAASGAAPLLVQIL SGSVQG+VDAVT LH LS+C EN  PI
Sbjct: 133 LAAASILTLSAAEPNKPIIAASGAAPLLVQILSSGSVQGKVDAVTVLHNLSSCAENIHPI 192

Query: 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG 248
           +D  AV PLINLLK+CKKYSKFAEKATALLEILS+SEEGRIAIT+SDGGILTLVETVEDG
Sbjct: 193 VDGKAVSPLINLLKECKKYSKFAEKATALLEILSNSEEGRIAITDSDGGILTLVETVEDG 252

Query: 249 SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308
           SLVST+HAVGALLSLCQSCR+KYR+LILKEGAIPGLLRLTVEGT +AQ+RARTLLDLLRD
Sbjct: 253 SLVSTEHAVGALLSLCQSCREKYRELILKEGAIPGLLRLTVEGTSKAQDRARTLLDLLRD 312

Query: 309 TPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSA 368
           TPQEKRLSSSVLE+IVY+IA RVDG+DKAAETAKRLLQDMVQRSMELSM  IQ RAAS  
Sbjct: 313 TPQEKRLSSSVLERIVYNIATRVDGSDKAAETAKRLLQDMVQRSMELSMNSIQHRAASCT 372

Query: 369 PSKIPS 374
           PSKIPS
Sbjct: 373 PSKIPS 378

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225447490|ref|XP_002264882.1| PREDICTED: U-box domain-containing protein 4-like [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/361 (77%), Positives = 322/361 (89%), Gaps = 1/361 (0%)

Query: 14  QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF-AAAGVVQP 72
           +E E W Q+K+ LI+ ++++L+NGDL++KI+AA DIR +++ SS+KTRS+F AAA V+QP
Sbjct: 14  EEGEIWTQQKRTLIDGVAERLLNGDLDSKIQAAIDIRNILRNSSVKTRSKFTAAADVIQP 73

Query: 73  LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAA 132
           LV +L+SPN  A E SLLALL LA RNERNKV+I T+GA+PPLVELL+FQNG LRELA A
Sbjct: 74  LVSLLLSPNQHAAEVSLLALLTLAARNERNKVRIVTSGAVPPLVELLEFQNGRLRELAIA 133

Query: 133 AILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT 192
           AILTLSAAAPNK  IAASGAAPLLVQIL SGSVQG+VDAVTALHYLS+C E ++P++DA 
Sbjct: 134 AILTLSAAAPNKLTIAASGAAPLLVQILSSGSVQGKVDAVTALHYLSSCTEATTPVIDAR 193

Query: 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 252
           AV PLI LLKDCKKYSKFAEK TALLEILS SEEG+ AI+NSDGGILTLVET+EDGSLVS
Sbjct: 194 AVSPLIKLLKDCKKYSKFAEKTTALLEILSKSEEGQTAISNSDGGILTLVETIEDGSLVS 253

Query: 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312
           T+HAVGALLSLCQSCR+KYR+LILKEGAIPGLLRLTVEGT EAQERAR LLDLLRD+P E
Sbjct: 254 TEHAVGALLSLCQSCRNKYRELILKEGAIPGLLRLTVEGTPEAQERARMLLDLLRDSPPE 313

Query: 313 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI 372
           KRL+SSVLE+I YDIAARVDG+DKAAETAKRLLQDMV RSMELS+ RIQ+RAAS  PS+I
Sbjct: 314 KRLASSVLERIAYDIAARVDGSDKAAETAKRLLQDMVHRSMELSLGRIQRRAASCTPSQI 373

Query: 373 P 373
           P
Sbjct: 374 P 374

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296085056|emb|CBI28471.3| unnamed protein product [Vitis vinifera]

 Score =  543 bits (1400), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 279/361 (77%), Positives = 322/361 (89%), Gaps = 1/361 (0%)

Query: 14  QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF-AAAGVVQP 72
           +E E W Q+K+ LI+ ++++L+NGDL++KI+AA DIR +++ SS+KTRS+F AAA V+QP
Sbjct: 5   EEGEIWTQQKRTLIDGVAERLLNGDLDSKIQAAIDIRNILRNSSVKTRSKFTAAADVIQP 64

Query: 73  LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAA 132
           LV +L+SPN  A E SLLALL LA RNERNKV+I T+GA+PPLVELL+FQNG LRELA A
Sbjct: 65  LVSLLLSPNQHAAEVSLLALLTLAARNERNKVRIVTSGAVPPLVELLEFQNGRLRELAIA 124

Query: 133 AILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT 192
           AILTLSAAAPNK  IAASGAAPLLVQIL SGSVQG+VDAVTALHYLS+C E ++P++DA 
Sbjct: 125 AILTLSAAAPNKLTIAASGAAPLLVQILSSGSVQGKVDAVTALHYLSSCTEATTPVIDAR 184

Query: 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 252
           AV PLI LLKDCKKYSKFAEK TALLEILS SEEG+ AI+NSDGGILTLVET+EDGSLVS
Sbjct: 185 AVSPLIKLLKDCKKYSKFAEKTTALLEILSKSEEGQTAISNSDGGILTLVETIEDGSLVS 244

Query: 253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE 312
           T+HAVGALLSLCQSCR+KYR+LILKEGAIPGLLRLTVEGT EAQERAR LLDLLRD+P E
Sbjct: 245 TEHAVGALLSLCQSCRNKYRELILKEGAIPGLLRLTVEGTPEAQERARMLLDLLRDSPPE 304

Query: 313 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI 372
           KRL+SSVLE+I YDIAARVDG+DKAAETAKRLLQDMV RSMELS+ RIQ+RAAS  PS+I
Sbjct: 305 KRLASSVLERIAYDIAARVDGSDKAAETAKRLLQDMVHRSMELSLGRIQRRAASCTPSQI 364

Query: 373 P 373
           P
Sbjct: 365 P 365

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582882|ref|XP_002532213.1| Vacuolar protein, putative [Ricinus communis] gi|223528109|gb|EEF30182.1| Vacuolar protein, putative [Ricinus communis]

 Score =  518 bits (1333), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 278/358 (77%), Positives = 317/358 (88%), Gaps = 3/358 (0%)

Query: 19  WNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE--FAAAGVVQPLVLM 76
           WN +K+ LI+++S++L  GDL T+I+AA+D+RK+V+KSS  T++   FAAAGV+QPLV M
Sbjct: 34  WNVKKETLIQQVSERLKKGDLNTQIQAAKDLRKLVRKSSSSTKTRSKFAAAGVIQPLVFM 93

Query: 77  LVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILT 136
           L S NLDA  +SLLALLNLAVRN+RNKVKI TAGA+PPLVELLKFQNG LREL AAAILT
Sbjct: 94  LFSSNLDARHASLLALLNLAVRNQRNKVKIVTAGAVPPLVELLKFQNGGLRELGAAAILT 153

Query: 137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPP 196
           LSAA PNK  IAASGAAPLL+QIL+SGSVQG+VDAVTALH LSTC +NS PI+DA AV P
Sbjct: 154 LSAAEPNKQTIAASGAAPLLIQILYSGSVQGKVDAVTALHNLSTCNKNSHPIVDAKAVSP 213

Query: 197 LINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA 256
           LI LLK+CKKYSKFAEKATALLEI+S+SEEGRIAIT SDGGILTLVETVEDGSLVST++A
Sbjct: 214 LIKLLKECKKYSKFAEKATALLEIISNSEEGRIAITESDGGILTLVETVEDGSLVSTEYA 273

Query: 257 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS 316
           VG LL+LCQS RDKYR+LILKEGAIPGLL+LTVEGT EAQ+RARTLLDLLRDTP EK+L+
Sbjct: 274 VGILLTLCQSNRDKYRELILKEGAIPGLLQLTVEGTSEAQKRARTLLDLLRDTP-EKKLA 332

Query: 317 SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 374
           S+VLEKIVYDIAARVDG+DKAAETAK+LLQDMVQRSMELS  RIQ   A+   SKI S
Sbjct: 333 SAVLEKIVYDIAARVDGSDKAAETAKQLLQDMVQRSMELSRGRIQHTTAACPSSKISS 390

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553040|ref|XP_003544866.1| PREDICTED: U-box domain-containing protein 4-like [Glycine max]

 Score =  516 bits (1329), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 283/359 (78%), Positives = 312/359 (86%), Gaps = 4/359 (1%)

Query: 19  WNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSL---KTRSEFAAAGVVQPLVL 75
           W+  K   I ELS+ L NG+L  KIEAAR+IRK+V+KSS    KTR++ AAAGV++PLVL
Sbjct: 21  WSLGKHTQIIELSETLTNGNLSAKIEAAREIRKMVRKSSSSSSKTRAKLAAAGVIEPLVL 80

Query: 76  MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL 135
           ML S N+DA +SSLLALLNLAVRNERNKVKI T GA+PPLVELLK QN ++RELA AAIL
Sbjct: 81  MLSSSNVDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSSIRELATAAIL 140

Query: 136 TLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP 195
           TLSAAA NKP IAASGAAPLLVQIL SGSVQG+VDAVTALH LST   NS  +LDA+AV 
Sbjct: 141 TLSAAASNKPIIAASGAAPLLVQILKSGSVQGKVDAVTALHNLSTSIANSIELLDASAVF 200

Query: 196 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 255
           PL+NLLK+CKKYSKFAEKATALLEILS+SEEGR AI+ +DGGILTLVETVEDGSLVST+H
Sbjct: 201 PLLNLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEH 260

Query: 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRL 315
           AVG LLSLC+SCRDKYR+LILKEGAIPGLLRLTVEGT EAQ+RAR LLDLLRD+P EKRL
Sbjct: 261 AVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRL 320

Query: 316 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 374
           +SSVLEKIVYDIA RVDGADKAAETAKRLLQDMVQRSME SM  IQ RAAS  PS IPS
Sbjct: 321 TSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTPS-IPS 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356500835|ref|XP_003519236.1| PREDICTED: U-box domain-containing protein 3-like [Glycine max]

 Score =  505 bits (1300), Expect = e-140,   Method: Compositional matrix adjust.
 Identities = 282/359 (78%), Positives = 309/359 (86%), Gaps = 5/359 (1%)

Query: 19  WNQRKQALIEELSDKLINGD-LETKIEAARDIRKVVKKSSLK--TRSEFAAAGVVQPLVL 75
           W+  K   I  LS+KLING+ L  KIEAAR+IRK+V+KSS    TR++ AAAGV++PLVL
Sbjct: 24  WSLGKHTQIIGLSEKLINGNNLSAKIEAAREIRKMVRKSSSSSKTRAKLAAAGVIEPLVL 83

Query: 76  MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL 135
           ML S NLDA +SSLLALLNLAVRNERNKVKI T GA+PPLVELLK QN  +RELA AAIL
Sbjct: 84  MLSSSNLDARQSSLLALLNLAVRNERNKVKIVTDGAMPPLVELLKMQNSGIRELATAAIL 143

Query: 136 TLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP 195
           TLSAA  NKP IAASGA PLLVQIL SGSVQG+VDAVTALH LST  ENS  +LDA+AV 
Sbjct: 144 TLSAATSNKPIIAASGAGPLLVQILKSGSVQGKVDAVTALHNLSTGIENSIELLDASAVF 203

Query: 196 PLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH 255
           PL+NLLK+CKKYSKFAEKATALLEILS+SEEGR AI+ +DGGILTLVETVEDGSLVST+H
Sbjct: 204 PLLNLLKECKKYSKFAEKATALLEILSNSEEGRTAISIADGGILTLVETVEDGSLVSTEH 263

Query: 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRL 315
           AVG LLSLC+SCRDKYR+LILKEGAIPGLLRLTVEGT EAQ+RAR LLDLLRD+P EKRL
Sbjct: 264 AVGTLLSLCRSCRDKYRELILKEGAIPGLLRLTVEGTAEAQDRARVLLDLLRDSPPEKRL 323

Query: 316 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKIPS 374
           +SSVLEKIVYDIA RVDGADKAAETAKRLLQDMVQRSME SM  IQ RAAS  P  IPS
Sbjct: 324 TSSVLEKIVYDIAERVDGADKAAETAKRLLQDMVQRSMEHSMKCIQHRAASCTP--IPS 380

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357490509|ref|XP_003615542.1| U-box domain-containing protein [Medicago truncatula] gi|355516877|gb|AES98500.1| U-box domain-containing protein [Medicago truncatula]

 Score =  456 bits (1172), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 245/326 (75%), Positives = 282/326 (86%), Gaps = 5/326 (1%)

Query: 19  WNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV 78
           W Q +   ++ LS+KL NG+L TKIEAAR+IR++V+KSS KTRS+ A +GV+QPL+ ML 
Sbjct: 28  WKQNQT--LQTLSEKLTNGNLNTKIEAAREIRRMVRKSS-KTRSKLADSGVIQPLIFMLS 84

Query: 79  SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138
           S N++A ESSLLALLNLAVRNERNKV+I TAGA+PPLVELLK Q+  +RELA AAILTLS
Sbjct: 85  SSNIEARESSLLALLNLAVRNERNKVQIVTAGAVPPLVELLKMQSNGIRELATAAILTLS 144

Query: 139 AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI 198
           +AAPNKP IAASGAAPLLVQIL SGSVQG+VD VT LH LS    N   +LDA+AV PLI
Sbjct: 145 SAAPNKPIIAASGAAPLLVQILKSGSVQGKVDTVTTLHNLSYSTVNPIELLDASAVSPLI 204

Query: 199 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258
           NLLKDCKKYS FAEKAT+LLEILS+SEEGRIAI+ ++GGILTLVETVEDGSLVST++AVG
Sbjct: 205 NLLKDCKKYSNFAEKATSLLEILSNSEEGRIAISLTEGGILTLVETVEDGSLVSTEYAVG 264

Query: 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS 318
           ALLSLC SCRDKYR+LILKEGAIPGLLRLTVEGT EAQ+RAR LLDLLRD+P+EKRL SS
Sbjct: 265 ALLSLCLSCRDKYRELILKEGAIPGLLRLTVEGTVEAQDRARMLLDLLRDSPKEKRLDSS 324

Query: 319 VLEKIVYDIAARVD--GADKAAETAK 342
           VLEKIVYD+A R+D    DKAAET+K
Sbjct: 325 VLEKIVYDMAERLDRVSVDKAAETSK 350

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15235456|ref|NP_193007.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana] gi|4586247|emb|CAB40988.1| putative protein [Arabidopsis thaliana] gi|7267972|emb|CAB78313.1| putative protein [Arabidopsis thaliana] gi|110737831|dbj|BAF00854.1| hypothetical protein [Arabidopsis thaliana] gi|111074334|gb|ABH04540.1| At4g12710 [Arabidopsis thaliana] gi|332657766|gb|AEE83166.1| armadillo/beta-catenin-like repeat-containing protein [Arabidopsis thaliana]

 Score =  437 bits (1125), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 237/346 (68%), Positives = 289/346 (83%), Gaps = 3/346 (0%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLD 83
           LI  LS KL++GDL+ +IEAA++IRK+++KS +K+  RS+ A AGV+ PLV ML S N+D
Sbjct: 46  LILHLSKKLLHGDLDFRIEAAKEIRKLLRKSPVKSSARSKLADAGVIPPLVPMLFSSNVD 105

Query: 84  AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143
           A  +SLLALLNLAVRNERNK++I  AGA+PPL+++LK  N +LRELA AAILTLSAA  N
Sbjct: 106 ARHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPAN 165

Query: 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
           K  I +SG  PLL+Q+L SG+VQG+VDAVTALH LS CKE S+PILDA AV PLI+LLK+
Sbjct: 166 KAMIISSGVPPLLIQMLSSGTVQGKVDAVTALHNLSACKEYSAPILDAKAVYPLIHLLKE 225

Query: 204 CKKYSKFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262
           CKK+SKFAEKATAL+E ILS SE+GR AIT+ + GILTLVETVEDGS +S +HAVGALLS
Sbjct: 226 CKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLS 285

Query: 263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEK 322
           LC+S RDKYR+LILKEGAIPGLL  TV+GT ++++RAR LLDLLR+TP+EK ++   LEK
Sbjct: 286 LCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLLDLLRETPREKEMTPLTLEK 345

Query: 323 IVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSA 368
           IVY IA +VDGA+KAAETAK+LLQDMV RSMELSM  IQ +AAS A
Sbjct: 346 IVYGIAVQVDGAEKAAETAKKLLQDMVHRSMELSMKSIQHKAASCA 391

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297790862|ref|XP_002863316.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata] gi|297309150|gb|EFH39575.1| armadillo/beta-catenin repeat family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  432 bits (1112), Expect = e-118,   Method: Compositional matrix adjust.
 Identities = 236/350 (67%), Positives = 289/350 (82%), Gaps = 3/350 (0%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLD 83
           LI  LS KL++GDL+ +IEAA++IRK+++KS +K+  RS+ A AGV+ PLV ML+S N+D
Sbjct: 45  LILHLSKKLLHGDLDFRIEAAKEIRKLLRKSPVKSSARSKLADAGVIPPLVPMLISSNVD 104

Query: 84  AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143
           A  +SLLALLNLAVRNERNK++I  AGA+PPL+++LK  N +LRELA AAILTLSAA  N
Sbjct: 105 ARHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNASLRELATAAILTLSAAPAN 164

Query: 144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
           K  I  SG  PLLVQ+L SG+VQG+VDAVTALH LS CKE S+ ILDA AV PLI+LLK+
Sbjct: 165 KATIITSGVPPLLVQMLSSGTVQGKVDAVTALHNLSACKEYSASILDAKAVSPLIHLLKE 224

Query: 204 CKKYSKFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262
           CKK+SKFAEKATAL+E ILS SE+GR AIT+ + GILTLVETVEDGS +S +HAVGALLS
Sbjct: 225 CKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILTLVETVEDGSPLSIEHAVGALLS 284

Query: 263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEK 322
           LC+S RDKYR+LILKEGAIPGLL  TVEGT ++++RAR LLDLLR+T +EK ++  +LEK
Sbjct: 285 LCRSDRDKYRKLILKEGAIPGLLSSTVEGTSKSRDRARVLLDLLRETSREKEMAPLILEK 344

Query: 323 IVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAASSAPSKI 372
           IVY IA +VDGA+KAAETAK+LLQ+MV RSMELSM  IQ +A  S+ S I
Sbjct: 345 IVYGIAVQVDGAEKAAETAKKLLQNMVHRSMELSMKSIQHKANISSKSNI 394

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444466|ref|XP_004139995.1| PREDICTED: U-box domain-containing protein 2-like [Cucumis sativus]

 Score =  422 bits (1086), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 242/344 (70%), Positives = 291/344 (84%), Gaps = 2/344 (0%)

Query: 12  TDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQ 71
           +D +    N RKQ LI +LS +LI+GDL ++IEAA+D+R + +KSS K+RS   A+ ++Q
Sbjct: 20  SDSQISNSNHRKQFLIFQLSQRLIHGDLHSRIEAAKDLRNLARKSSPKSRSNLGASSLIQ 79

Query: 72  PLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAA 131
           PLV ML+SPNLDA E+SLLALLNLA RNERNK+KI  AGAIPPL+ELLK QN +LRELA 
Sbjct: 80  PLVCMLLSPNLDAREASLLALLNLASRNERNKIKIVAAGAIPPLLELLKLQNLSLRELAT 139

Query: 132 AAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPIL 189
           AAILTLSAA  NKP I ++GA  LLVQIL SGSVQ +VDAVTAL+YLS C   E+SS +L
Sbjct: 140 AAILTLSAATSNKPVILSAGATSLLVQILISGSVQAKVDAVTALYYLSACTESESSSMML 199

Query: 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS 249
           D  AV PLI+LLK+CKK+SKFAEK T+LL+I+S+SEEGR AI+NSDGGILTLV+T+EDGS
Sbjct: 200 DPGAVAPLIDLLKECKKHSKFAEKTTSLLQIISNSEEGRTAISNSDGGILTLVQTIEDGS 259

Query: 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT 309
           LVST+HAVG LLS+CQ+CR+ YR+ ILKEGAIPGLLRLTVEGT EAQERAR LLDLLRD+
Sbjct: 260 LVSTEHAVGVLLSMCQTCRETYREPILKEGAIPGLLRLTVEGTTEAQERARRLLDLLRDS 319

Query: 310 PQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 353
           PQEKR+SS+ LE+IVY IAA VDG D+AAETAKRL+Q+MVQR +
Sbjct: 320 PQEKRMSSADLERIVYKIAAEVDGIDQAAETAKRLMQEMVQRRL 363

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	375
TAIR|locus:2135788	402	AT4G12710 [Arabidopsis thalian	0.952	0.888	0.586	2.7e-100
TAIR|locus:2099634	408	AT3G03440 "AT3G03440" [Arabido	0.893	0.821	0.388	6.1e-55
TAIR|locus:2145653	327	AT5G14510 [Arabidopsis thalian	0.837	0.960	0.316	4.6e-34
TAIR|locus:2096687	355	AT3G01400 [Arabidopsis thalian	0.730	0.771	0.316	1e-29
TAIR|locus:2102455	760	AT3G54790 [Arabidopsis thalian	0.704	0.347	0.349	1.1e-27
TAIR|locus:2045334	829	PUB4 "plant U-box 4" [Arabidop	0.709	0.320	0.326	1.8e-27
TAIR|locus:2158252	707	AT5G67340 [Arabidopsis thalian	0.704	0.373	0.340	2e-27
TAIR|locus:2178818	357	AT5G58680 "AT5G58680" [Arabido	0.658	0.691	0.300	1.5e-26
TAIR|locus:2130699	472	AT4G16490 "AT4G16490" [Arabido	0.768	0.610	0.306	3e-26
TAIR|locus:2082682	632	PUB14 "plant U-box 14" [Arabid	0.712	0.422	0.326	1.3e-24

TAIR|locus:2135788 AT4G12710 [Arabidopsis thaliana (taxid:3702)]

 Score = 995 (355.3 bits), Expect = 2.7e-100, P = 2.7e-100
 Identities = 211/360 (58%), Positives = 266/360 (73%)

Query:     7 KNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEF 64
             +++A  +     W   K+ LI  LS KL++GDL+ +IEAA++IRK+++KS +K+  RS+ 
Sbjct:    27 EDEAEEETTTNTWKTTKELLILHLSKKLLHGDLDFRIEAAKEIRKLLRKSPVKSSARSKL 86

Query:    65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNG 124
             A AGV+ PLV ML S N+DA  +SLLALLNLAVRNERNK++I  AGA+PPL+++LK  N 
Sbjct:    87 ADAGVIPPLVPMLFSSNVDARHASLLALLNLAVRNERNKIEIVKAGAVPPLIQILKLHNA 146

Query:   125 TLREXXXXXXXXXXXXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKEN 184
             +LRE                          LL+Q+L SG+VQG+VDAVTALH LS CKE 
Sbjct:   147 SLRELATAAILTLSAAPANKAMIISSGVPPLLIQMLSSGTVQGKVDAVTALHNLSACKEY 206

Query:   185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVE 243
             S+PILDA AV PLI+LLK+CKK+SKFAEKATAL+E ILS SE+GR AIT+ + GILTLVE
Sbjct:   207 SAPILDAKAVYPLIHLLKECKKHSKFAEKATALVEMILSHSEDGRNAITSCEDGILTLVE 266

Query:   244 TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAXXXX 303
             TVEDGS +S +HAVGALLSLC+S RDKYR+LILKEGAIPGLL  TV+GT ++++RA    
Sbjct:   267 TVEDGSPLSIEHAVGALLSLCRSDRDKYRKLILKEGAIPGLLSSTVDGTSKSRDRARVLL 326

Query:   304 XXXXXXPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQR 363
                   P+EK ++   LEKIVY IA +VDGA+KAAETAK+LLQDMV RSMELSM  IQ +
Sbjct:   327 DLLRETPREKEMTPLTLEKIVYGIAVQVDGAEKAAETAKKLLQDMVHRSMELSMKSIQHK 386

GO:0005737 "cytoplasm" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2099634 AT3G03440 "AT3G03440" [Arabidopsis thaliana (taxid:3702)]

 Score = 567 (204.7 bits), Expect = 6.1e-55, P = 6.1e-55
 Identities = 133/342 (38%), Positives = 205/342 (59%)

Query:    25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDA 84
             A I+ +   + + D ++++ AA++IR++ K S  + R  F+ A  V+PLV ML   + ++
Sbjct:    64 ASIQRVLSLIRSEDCDSRLFAAKEIRRLTKTSH-RCRRHFSQA--VEPLVSMLRFDSPES 120

Query:    85 I-ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXX 143
               E++LLALLNLAV++E+NKV I  AGA+ P++  L+  + TL+E               
Sbjct:   121 HHEAALLALLNLAVKDEKNKVSIIEAGALEPIINFLQSNSPTLQEYASASLLTLSASANN 180

Query:   144 XXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
                        LLV+++  GS Q + DAV AL  LST  +N S IL    + P++NLLK 
Sbjct:   181 KPIIGANGVVPLLVKVIKHGSPQAKADAVMALSNLSTLPDNLSMILATKPLSPILNLLKS 240

Query:   204 CKKYSKFAEKATALLEILS-SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262
              KK SK +EK  +L+E L  S EE R  + + +GG+L +VE +E+GSL + +HAVG LL+
Sbjct:   241 SKKSSKTSEKCCSLIEALMVSGEEARTGLVSDEGGVLAVVEVLENGSLQAREHAVGVLLT 300

Query:   263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXPQEK-RLSSSVLE 321
             LCQS R KYR+ IL+EG IPGLL LTV+GT +++ +A             +  +    +E
Sbjct:   301 LCQSDRSKYREPILREGVIPGLLELTVQGTSKSRIKAQRLLCLLRNSESPRSEVQPDTIE 360

Query:   322 KIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQR 363
              IV  + + +DG D++ + AK++L +MVQ SME S+  +Q+R
Sbjct:   361 NIVSSLISHIDGDDQSGK-AKKMLAEMVQVSMEKSLRHLQER 401

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

TAIR|locus:2145653 AT5G14510 [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 106/335 (31%), Positives = 182/335 (54%)

Query:    27 IEELS-DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAI 85
             +EE+  + L++G+ E++IEAA ++  +    S K R + A   ++ PL+ ML S +    
Sbjct:     1 MEEIVVESLLSGNRESQIEAAIELTNL----SRKQRQKLAEREIISPLLSMLQSQDCITT 56

Query:    86 ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNG-TLREXXXXXXXXXXXXXXXX 144
             E +L ALL+LA  +ERNKV+I  +GA+P L+E+L+ +    + E                
Sbjct:    57 EVALSALLSLAFGSERNKVRIVKSGAVPTLLEILQSETKMVVLELAMAFLLILSSCNKNK 116

Query:   145 XXXXXXXXXXLLVQI--LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP-PLINLL 201
                       LLV +  L   ++Q +VD +  L  LST  +   P++ A+  P  L+ ++
Sbjct:   117 VKMASTRLVQLLVGLIGLDRLTIQAKVDGIATLQNLSTLHQ-IVPLVIASGAPYALLQVI 175

Query:   202 KDCKKYSKFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260
               C K S+ A+KA ALLE I+S S E   ++++  G I  LVE +E+GS    +HAVG L
Sbjct:   176 NFCDKSSELADKAVALLENIISHSPE---SVSSIGGAIGVLVEAIEEGSAQCKEHAVGIL 232

Query:   261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAXXXXXXXXXXP----QEKRLS 316
             L +C + R+  R +IL+EG +PGLL+++V+GT  A+E A               + K+  
Sbjct:   233 LGICNNDRETNRGMILREGVMPGLLQVSVDGTRRAKEMARELLLLLRDCSGYVIKNKQSK 292

Query:   317 SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR 351
               ++E+I+ +I    +G ++   T  +L+++M+ +
Sbjct:   293 IEIVEQIMREIDQ--EG-ERIPGTMLKLVEEMISK 324

GO:0005871 "kinesin complex" evidence=IEA

GO:0008150 "biological_process" evidence=ND

GO:0019894 "kinesin binding" evidence=IEA

GO:0009832 "plant-type cell wall biogenesis" evidence=RCA

GO:0010014 "meristem initiation" evidence=RCA

GO:0010089 "xylem development" evidence=RCA

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2096687 AT3G01400 [Arabidopsis thaliana (taxid:3702)]

 Score = 329 (120.9 bits), Expect = 1.0e-29, P = 1.0e-29
 Identities = 89/281 (31%), Positives = 146/281 (51%)

Query:    20 NQRKQALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV 78
             ++    LI  L   L +   ++ + +AA +IR ++ K+  + R + A AG ++PL+ ++ 
Sbjct:    57 SENSDDLINHLVSHLDSSYSIDEQKQAAMEIR-LLSKNKPENRIKIAKAGAIKPLISLIS 115

Query:    79 SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXX 138
             S +L   E  + A+LNL++ +E NK  IA++GAI PLV  LK    T +E          
Sbjct:   116 SSDLQLQEYGVTAILNLSLCDE-NKESIASSGAIKPLVRALKMGTPTAKENAACALLRLS 174

Query:   139 XXXXXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI 198
                             LLV +L +G  + + DA TAL+ L + KEN    + +  + PL+
Sbjct:   175 QIEENKVAIGRSGAIPLLVNLLETGGFRAKKDASTALYSLCSAKENKIRAVQSGIMKPLV 234

Query:   199 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258
              L+ D    S   +K+  ++ +L S  E + AI   +GG+  LVE VE G+    + AV 
Sbjct:   235 ELMADFG--SNMVDKSAFVMSLLMSVPESKPAIVE-EGGVPVLVEIVEVGTQRQKEMAVS 291

Query:   259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
              LL LC+     YR ++ +EGAIP L+ L+  GT  A+++A
Sbjct:   292 ILLQLCEESV-VYRTMVAREGAIPPLVALSQAGTSRAKQKA 331

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2102455 AT3G54790 [Arabidopsis thaliana (taxid:3702)]

 Score = 319 (117.4 bits), Expect = 1.1e-27, P = 1.1e-27
 Identities = 95/272 (34%), Positives = 138/272 (50%)

Query:    29 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
             +L + L +G  + K  AA +IR +   +S++ R      G + PL+ +L S      E +
Sbjct:   476 KLVEDLKSGSNKVKTAAAAEIRHLTI-NSIENRVHIGRCGAITPLLSLLYSEEKLTQEHA 534

Query:    89 LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXX 148
             + ALLNL++ +E NK  I   GAI PLV +L   N   +E                    
Sbjct:   535 VTALLNLSI-SELNKAMIVEVGAIEPLVHVLNTGNDRAKENSAASLFSLSVLQVNRERIG 593

Query:   149 XXXXXX-LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY 207
                     LV +L  G+ +G+ DA +AL  LS   +N + I+ A AV  L+ LL    + 
Sbjct:   594 QSNAAIQALVNLLGKGTFRGKKDAASALFNLSITHDNKARIVQAKAVKYLVELLDPDLE- 652

Query:   208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC 267
                 +KA ALL  LS+  EGR AI   +GGI  LVETV+ GS    ++A   LL LC + 
Sbjct:   653 --MVDKAVALLANLSAVGEGRQAIVR-EGGIPLLVETVDLGSQRGKENAASVLLQLCLNS 709

Query:   268 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
               K+  L+L+EGAIP L+ L+  GT  A+E+A
Sbjct:   710 -PKFCTLVLQEGAIPPLVALSQSGTQRAKEKA 740

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2045334 PUB4 "plant U-box 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 318 (117.0 bits), Expect = 1.8e-27, P = 1.8e-27
 Identities = 89/273 (32%), Positives = 149/273 (54%)

Query:    27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
             +++L ++L +  L+T+ +A  ++R ++ K ++  R     +G +  LV +L S +    E
Sbjct:   546 VKKLVEELKSSSLDTQRQATAELR-LLAKHNMDNRIVIGNSGAIVLLVELLYSTDSATQE 604

Query:    87 SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXX 146
             +++ ALLNL++ N+ NK  IA AGAI PL+ +L+  +   +E                  
Sbjct:   605 NAVTALLNLSI-NDNNKKAIADAGAIEPLIHVLENGSSEAKENSAATLFSLSVIEENKIK 663

Query:   147 XXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK 206
                      LV +L +G+ +G+ DA TAL  LS  +EN + I+ + AV  LI+L+     
Sbjct:   664 IGQSGAIGPLVDLLGNGTPRGKKDAATALFNLSIHQENKAMIVQSGAVRYLIDLMDPA-- 721

Query:   207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266
              +   +KA A+L  L++  EGR AI   +GGI  LVE VE GS    ++A  ALL L  +
Sbjct:   722 -AGMVDKAVAVLANLATIPEGRNAI-GQEGGIPLLVEVVELGSARGKENAAAALLQLSTN 779

Query:   267 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
                ++  ++L+EGA+P L+ L+  GT  A+E+A
Sbjct:   780 S-GRFCNMVLQEGAVPPLVALSQSGTPRAREKA 811

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0019894 "kinesin binding" evidence=IEA

TAIR|locus:2158252 AT5G67340 [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.0e-27, P = 2.0e-27
 Identities = 94/276 (34%), Positives = 139/276 (50%)

Query:    27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
             +++L D L +  L+T+ EA   IR ++ ++S   R   A    +  LV +L S +     
Sbjct:   423 VKKLIDDLKSSSLDTQREATARIR-ILARNSTDNRIVIARCEAIPSLVSLLYSTDERIQA 481

Query:    87 SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXX 146
              ++  LLNL++ N+ NK  IA +GAI PL+ +LK   G L E                  
Sbjct:   482 DAVTCLLNLSI-NDNNKSLIAESGAIVPLIHVLK--TGYLEEAKANSAATLFSLSVIEEY 538

Query:   147 XXXXXXXXL---LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
                         LV +L SGS+ G+ DA TAL  LS   EN + +++A AV  L+ L+  
Sbjct:   539 KTEIGEAGAIEPLVDLLGSGSLSGKKDAATALFNLSIHHENKTKVIEAGAVRYLVELMDP 598

Query:   204 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
                +    EKA  +L  L++  EG+IAI   +GGI  LVE VE GS    ++A  ALL L
Sbjct:   599 A--FG-MVEKAVVVLANLATVREGKIAI-GEEGGIPVLVEVVELGSARGKENATAALLQL 654

Query:   264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
             C     K+   +++EG IP L+ LT  GT   +E+A
Sbjct:   655 CTHS-PKFCNNVIREGVIPPLVALTKSGTARGKEKA 689

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0006984 "ER-nucleus signaling pathway" evidence=RCA

GO:0007154 "cell communication" evidence=RCA

GO:0009409 "response to cold" evidence=RCA

GO:0009414 "response to water deprivation" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0034976 "response to endoplasmic reticulum stress" evidence=RCA

GO:0042538 "hyperosmotic salinity response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0050832 "defense response to fungus" evidence=RCA

TAIR|locus:2178818 AT5G58680 "AT5G58680" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 76/253 (30%), Positives = 135/253 (53%)

Query:    36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95
             +  +E + +AA +IR ++ K+  + R + A AG ++PLV ++ S +L   E  + A+LNL
Sbjct:    72 SSSIEEQKQAAMEIR-LLSKNKPENRIKLAKAGAIKPLVSLISSSDLQLQEYGVTAVLNL 130

Query:    96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXXXXXXXXXXXXXL 155
             ++ +E NK  I ++GA+ PLV  L+    T +E                          L
Sbjct:   131 SLCDE-NKEMIVSSGAVKPLVNALRLGTPTTKENAACALLRLSQVEENKITIGRSGAIPL 189

Query:   156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT 215
             LV +L +G  + + DA TAL+ L +  EN +  +++  + PL+ L+ D +  S   +K+ 
Sbjct:   190 LVNLLENGGFRAKKDASTALYSLCSTNENKTRAVESGIMKPLVELMIDFE--SDMVDKSA 247

Query:   216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275
              ++ +L S+ E + A+   +GG+  LVE VE G+    + +V  LL LC+     YR ++
Sbjct:   248 FVMNLLMSAPESKPAVVE-EGGVPVLVEIVEAGTQRQKEISVSILLQLCEESV-VYRTMV 305

Query:   276 LKEGAIPGLLRLT 288
              +EGA+P L+ L+
Sbjct:   306 AREGAVPPLVALS 318

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009693 "ethylene biosynthetic process" evidence=RCA

TAIR|locus:2130699 AT4G16490 "AT4G16490" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 3.0e-26, P = 3.0e-26
 Identities = 91/297 (30%), Positives = 152/297 (51%)

Query:    24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
             Q  ++   D L +  +  K  AA  +R ++ K+    R     +G +Q L+ +L   +  
Sbjct:   182 QPTVKLCIDGLRSSSVAIKRSAAAKLR-LLAKNRADNRVLIGESGAIQALIPLLRCNDPW 240

Query:    84 AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREXXXXXXXXXXXXXXX 143
               E ++ ALLNL++ +++NK  IA  GAI  LV +LK    T ++               
Sbjct:   241 TQEHAVTALLNLSL-HDQNKAVIAAGGAIKSLVWVLKTGTETSKQNAACALLSLALLEEN 299

Query:   144 XXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
                         LV +L +GS +G+ DA+T L+ L T ++N    + A AV PL++L+ +
Sbjct:   300 KGSIGACGAIPPLVSLLLNGSCRGKKDALTTLYKLCTLQQNKERAVTAGAVKPLVDLVAE 359

Query:   204 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
               + +  AEKA  +L  L++ ++G+ AI   +GGI  LVE +EDGS+   + A+  LL L
Sbjct:   360 --EGTGMAEKAMVVLSSLAAIDDGKEAIVE-EGGIAALVEAIEDGSVKGKEFAILTLLQL 416

Query:   264 CQ-SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQ-ERAXXXXXXXXXXPQEKRLSSS 318
             C  S R+  R L+++EGAIP L+ L+  G+   + +R           P+++  SSS
Sbjct:   417 CSDSVRN--RGLLVREGAIPPLVGLSQSGSVSVRAKRKAERLLGYLREPRKEASSSS 471

GO:0008150 "biological_process" evidence=ND

GO:0006816 "calcium ion transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

TAIR|locus:2082682 PUB14 "plant U-box 14" [Arabidopsis thaliana (taxid:3702)]

 Score = 289 (106.8 bits), Expect = 1.3e-24, P = 1.3e-24
 Identities = 91/279 (32%), Positives = 138/279 (49%)

Query:    24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
             +  +  L +KL NG  E +  AA ++R + K++ +  R   A AG +  LV +L SP+  
Sbjct:   344 RTFVLSLLEKLANGTTEQQRAAAGELRLLAKRN-VDNRVCIAEAGAIPLLVELLSSPDPR 402

Query:    84 AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTL--REXXXXXXXXXXXXX 141
               E S+ ALLNL++ NE NK  I  AGAI  +VE+LK  NG++  RE             
Sbjct:   403 TQEHSVTALLNLSI-NEGNKGAIVDAGAITDIVEVLK--NGSMEARENAAATLFSLSVID 459

Query:   142 XXXXXXXXXXXXXLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL 201
                           L+ +L  G+ +G+ DA TA+  L   + N S  +    V PL  LL
Sbjct:   460 ENKVAIGAAGAIQALISLLEEGTRRGKKDAATAIFNLCIYQGNKSRAVKGGIVDPLTRLL 519

Query:   202 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261
             KD        ++A A+L ILS+++EG+ AI  ++  I  LVE +  GS  + ++A   L 
Sbjct:   520 KDAG--GGMVDEALAILAILSTNQEGKTAIAEAES-IPVLVEIIRTGSPRNRENAAAILW 576

Query:   262 SLCQSCRDKYRQLILKE-GAIPGLLRLTVEGTFEAQERA 299
              LC    ++    + +E GA   L  LT  GT  A+ +A
Sbjct:   577 YLCIGNIERLN--VAREVGADVALKELTENGTDRAKRKA 613

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;IDA

GO:0005871 "kinesin complex" evidence=IEA

GO:0016567 "protein ubiquitination" evidence=IEA;ISS

GO:0019894 "kinesin binding" evidence=IEA

GO:0070696 "transmembrane receptor protein serine/threonine kinase binding" evidence=IPI

GO:0005515 "protein binding" evidence=IPI

GO:0046777 "protein autophosphorylation" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00141170 hypothetical protein (379 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	375
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-12
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	2e-10
cd00020	120	cd00020, ARM, Armadillo/beta-catenin-like repeats	1e-09
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	1e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-05
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	5e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	9e-05
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	2e-04
COG5064	526	COG5064, SRP1, Karyopherin (importin) alpha [Intra	2e-04
PLN03200	2102	PLN03200, PLN03200, cellulose synthase-interactive	0.001
pfam00514	41	pfam00514, Arm, Armadillo/beta-catenin-like repeat	0.004

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 63.1 bits (154), Expect = 2e-12
 Identities = 40/121 (33%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSG 163
            +  AG +P LV LL   +  ++  AA A+  LSA    N  A+  +G  P LVQ+L S 
Sbjct: 2   AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSE 61

Query: 164 SVQGRVDAVTALHYLSTCKENSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILS 222
             +    A+ AL  L+   E++  I+ +A  VP L+NLL          + AT  L  L+
Sbjct: 62  DEEVVKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDS--SNEDIQKNATGALSNLA 119

Query: 223 S 223
           S
Sbjct: 120 S 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 57.7 bits (140), Expect = 2e-10
 Identities = 35/110 (31%), Positives = 56/110 (50%), Gaps = 1/110 (0%)

Query: 67  AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTL 126
           AG +  LV +L S + +    +  AL NL+  N  N   +  AG +P LV+LLK ++  +
Sbjct: 6   AGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEV 65

Query: 127 RELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL 175
            + A  A+  L+A    NK  +  +G  P LV +L S +   + +A  AL
Sbjct: 66  VKAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGAL 115

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|237987 cd00020, ARM, Armadillo/beta-catenin-like repeats

 Score = 55.4 bits (134), Expect = 1e-09
 Identities = 32/114 (28%), Positives = 56/114 (49%), Gaps = 1/114 (0%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAI 85
            +  L   L + D   + EAA  +  +   ++         AG +  LV +L S + + +
Sbjct: 8   GLPALVSLLSSSDENVQREAAWALSNLSAGNN-DNIQAVVEAGGLPALVQLLKSEDEEVV 66

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139
           +++L AL NLA   E NK+ +  AG +P LV LL   N  +++ A  A+  L++
Sbjct: 67  KAALWALRNLAAGPEDNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS 120

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model. Length = 120

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 35/102 (34%), Positives = 57/102 (55%), Gaps = 3/102 (2%)

Query: 36   NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95
            +  LE K +AA   R +   ++ + RS  AAA  ++PL+ +LVS +  A E+ + AL  L
Sbjct: 1329 DSSLELKEDAAELCRVLF--TNTRIRSTPAAARCIEPLISLLVSESSTAQEAGVCALDRL 1386

Query: 96   AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137
             + +E+    +A  GA+ PLV L+   N  L E A +A++ L
Sbjct: 1387 -LDDEQLAELVAAHGAVVPLVGLVVGTNYVLHEAAISALIKL 1427

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 70/248 (28%), Positives = 117/248 (47%), Gaps = 20/248 (8%)

Query: 34  LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL 93
           L +G L  K+ AA  +  + K+  L  R +    G + PL+ +L S + +A +++  A+ 
Sbjct: 67  LRSGTLGAKVNAAAVLGVLCKEEDL--RVKVLLGGCIPPLLSLLKSGSAEAQKAAAEAIY 124

Query: 94  NLAVRNERNKV--KI-ATAGAIPPLVELLKFQNG---TLRELAAAAILTLSAAAPNK-PA 146
            ++     + V  KI +T G +P L + L+  N     +  L   A+  L  +      A
Sbjct: 125 AVSSGGLSDHVGSKIFSTEGVVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGSTDGFWSA 184

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCK 205
              +G   +LV++L SG+   + +A + L  L    E+S   +LDA AV  L+ LL    
Sbjct: 185 TLEAGGVDILVKLLSSGNSDAQANAASLLARLMMAFESSISKVLDAGAVKQLLKLLGQGN 244

Query: 206 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ---------HA 256
           + S  AE A AL  + S S+E + AI ++ GGI  L+      S    Q         +A
Sbjct: 245 EVSVRAEAAGALEALSSQSKEAKQAIADA-GGIPALINATVAPSKEFMQGEFAQALQENA 303

Query: 257 VGALLSLC 264
           +GAL ++C
Sbjct: 304 MGALANIC 311

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 44.5 bits (105), Expect = 5e-05
 Identities = 46/167 (27%), Positives = 75/167 (44%), Gaps = 11/167 (6%)

Query: 42  KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER 101
           + EAA  +  +   ++ +T+     AG V   + +L S   D  E ++ AL N+A  +E 
Sbjct: 132 QFEAAWALTNIASGTTQQTKV-VVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEG 190

Query: 102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS------AAAPNKPAIAASGAAPL 155
            +  +   GA+ PL+ LL   +     +   A  TLS         P+   I  S A P+
Sbjct: 191 CRDYVLQCGALEPLLGLLL-SSAIHISMLRNATWTLSNLCRGKNPPPDWSNI--SQALPI 247

Query: 156 LVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLL 201
           L ++++S   +  VDA  A+ YLS    E    +LD      L+ LL
Sbjct: 248 LAKLIYSRDPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELL 294

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 44.3 bits (105), Expect = 9e-05
 Identities = 56/190 (29%), Positives = 89/190 (46%), Gaps = 21/190 (11%)

Query: 127 RELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN 184
           +EL  A +L L+           S   A PLLV +L SG++  +V+A   L  L  CKE 
Sbjct: 32  KELTTARLLELAKTREEARKAIGSHSQAMPLLVSLLRSGTLGAKVNAAAVLGVL--CKEE 89

Query: 185 S--SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA------ITNSDG 236
                +L    +PPL++LLK     S  AE   A  E + +   G ++      I +++G
Sbjct: 90  DLRVKVLLGGCIPPLLSLLK-----SGSAEAQKAAAEAIYAVSSGGLSDHVGSKIFSTEG 144

Query: 237 GILTLVETVEDGSL---VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF 293
            + +L + ++ G+    V      GAL +LC S  D +    L+ G +  L++L   G  
Sbjct: 145 VVPSLWDQLQPGNKQDKVVEGLLTGALRNLCGS-TDGFWSATLEAGGVDILVKLLSSGNS 203

Query: 294 EAQERARTLL 303
           +AQ  A +LL
Sbjct: 204 DAQANAASLL 213

Length = 2102

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 43.6 bits (103), Expect = 2e-04
 Identities = 76/297 (25%), Positives = 122/297 (41%), Gaps = 49/297 (16%)

Query: 66  AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT 125
           AAG + PLV +L + +  A E S   L NL   +E  +  + +AGA+P L+ LLK  NG 
Sbjct: 486 AAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLK--NGG 543

Query: 126 LR--ELAAAAILTLS----------------------------------AAAPNKPAI-- 147
            +  E+AA  +  L                                   + A  +  +  
Sbjct: 544 PKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVRE 603

Query: 148 --AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN--SSPILDATAVPPLINLLKD 203
             AA+ A   L+Q+L S   + +  A + L  + + +++   S   D   + P I LL +
Sbjct: 604 GSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEI-INPCIKLLTN 662

Query: 204 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
               +   + A AL  +  S +E R     ++  I  L++  +  S+   + AV AL +L
Sbjct: 663 -NTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSIEVAEQAVCALANL 721

Query: 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRLSSSV 319
                 +     L E  I  L R+  EGT E +  A R L  LL+  P +  L  SV
Sbjct: 722 LSD--PEVAAEALAEDIILPLTRVLREGTLEGKRNAARALAQLLKHFPVDDVLKDSV 776

Length = 2102

>gnl|CDD|227396 COG5064, SRP1, Karyopherin (importin) alpha [Intracellular trafficking and secretion]

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 32/120 (26%), Positives = 48/120 (40%), Gaps = 9/120 (7%)

Query: 105 KIATAGAIPPLVELLKFQNGTLRELAAAAILT--LSAAAPNKPAIAASGAAPLLVQILHS 162
            +  AG +P  VE +      + +  AA  LT   S        +  +GA PL +Q+L S
Sbjct: 109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQTKVVVDAGAVPLFIQLLSS 168

Query: 163 GSVQGRVDAVTALHYL----STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL 218
                R  AV AL  +      C++    +L   A+ PL+ LL     +      AT  L
Sbjct: 169 TEDDVREQAVWALGNIAGDSEGCRDY---VLQCGALEPLLGLLLSSAIHISMLRNATWTL 225

Length = 526

>gnl|CDD|215629 PLN03200, PLN03200, cellulose synthase-interactive protein; Provisional

 Score = 40.5 bits (95), Expect = 0.001
 Identities = 64/257 (24%), Positives = 110/257 (42%), Gaps = 13/257 (5%)

Query: 88  SLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA- 146
           +LLA+L      + +K  I  AG IPPLV+LL+  +   +E +A  +  L   + +  A 
Sbjct: 468 ALLAIL--TDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRAC 525

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK 206
           + ++GA P L+ +L +G  +G+  A   L  L     +++ I   TA+     LL D  +
Sbjct: 526 VESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVR-TADAATISQLTAL-----LLGDLPE 579

Query: 207 YSKFAEKATALLEILSSSEEGRIAITNSDG--GILTLVETVEDGSLVSTQHAVGALLSLC 264
            SK       L  +LS +    +    S     + TL++ +      + + A   L  + 
Sbjct: 580 -SK-VHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIF 637

Query: 265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIV 324
            S +D    L   E   P +  LT      A + AR L  L R   + +++S +  + I 
Sbjct: 638 SSRQDLCESLATDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIK 697

Query: 325 YDIAARVDGADKAAETA 341
             I      + + AE A
Sbjct: 698 PLIKLAKSSSIEVAEQA 714

Length = 2102

>gnl|CDD|201276 pfam00514, Arm, Armadillo/beta-catenin-like repeat

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 15/40 (37%), Positives = 22/40 (55%)

Query: 141 APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180
             NK A+  +GA P LVQ+L S   + + +A  AL  L+ 
Sbjct: 2   PENKQAVIEAGAVPPLVQLLSSPDEEVQEEAAWALSNLAA 41

Approx. 40 amino acid repeat. Tandem repeats form super-helix of helices that is proposed to mediate interaction of beta-catenin with its ligands. CAUTION: This family does not contain all known armadillo repeats. Length = 41

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	375
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	100.0
PLN03200	2102	cellulose synthase-interactive protein; Provisiona	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	100.0
KOG0166	514	consensus Karyopherin (importin) alpha [Intracellu	100.0
KOG4224	550	consensus Armadillo repeat protein VAC8 required f	99.98
COG5064	526	SRP1 Karyopherin (importin) alpha [Intracellular t	99.97
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.92
PF05804	708	KAP: Kinesin-associated protein (KAP)	99.88
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.87
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.86
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.84
KOG4199	461	consensus Uncharacterized conserved protein [Funct	99.82
KOG1048	717	consensus Neural adherens junction protein Plakoph	99.74
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.71
KOG2122	2195	consensus Beta-catenin-binding protein APC, contai	99.7
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.68
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.67
PF10508	503	Proteasom_PSMB: Proteasome non-ATPase 26S subunit;	99.66
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.64
PF04826	254	Arm_2: Armadillo-like; InterPro: IPR006911 This en	99.63
PRK09687	280	putative lyase; Provisional	99.57
KOG4500	604	consensus Rho/Rac GTPase guanine nucleotide exchan	99.52
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.48
cd00020	120	ARM Armadillo/beta-catenin-like repeats. An approx	99.48
PRK09687	280	putative lyase; Provisional	99.44
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.43
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.34
PRK13800	897	putative oxidoreductase/HEAT repeat-containing pro	99.33
KOG1222	791	consensus Kinesin associated protein KAP [Intracel	99.32
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.29
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.27
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	99.25
cd00256	429	VATPase_H VATPase_H, regulatory vacuolar ATP synth	99.24
KOG3678	832	consensus SARM protein (with sterile alpha and arm	99.23
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	99.2
PF03224	312	V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004	99.16
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	99.15
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	99.12
KOG2973	353	consensus Uncharacterized conserved protein [Funct	99.12
KOG1293	678	consensus Proteins containing armadillo/beta-caten	99.11
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.1
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	99.08
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.07
PF01602	526	Adaptin_N: Adaptin N terminal region; InterPro: IP	99.04
KOG0168	1051	consensus Putative ubiquitin fusion degradation pr	99.04
KOG2160	342	consensus Armadillo/beta-catenin-like repeat-conta	98.98
PTZ00429	746	beta-adaptin; Provisional	98.97
KOG2171	1075	consensus Karyopherin (importin) beta 3 [Nuclear s	98.92
KOG2973	353	consensus Uncharacterized conserved protein [Funct	98.85
PTZ00429	746	beta-adaptin; Provisional	98.8
KOG0946	970	consensus ER-Golgi vesicle-tethering protein p115	98.69
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.68
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.66
KOG2759	442	consensus Vacuolar H+-ATPase V1 sector, subunit H	98.63
KOG4646	173	consensus Uncharacterized conserved protein, conta	98.61
TIGR02270	410	conserved hypothetical protein. Members are found	98.6
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.55
KOG2023	885	consensus Nuclear transport receptor Karyopherin-b	98.5
TIGR02270	410	conserved hypothetical protein. Members are found	98.47
KOG3678	832	consensus SARM protein (with sterile alpha and arm	98.46
PF05536	543	Neurochondrin: Neurochondrin	98.46
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.45
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.45
PF05536	543	Neurochondrin: Neurochondrin	98.39
KOG1789	2235	consensus Endocytosis protein RME-8, contains DnaJ	98.38
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.37
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	98.35
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.34
KOG4413	524	consensus 26S proteasome regulatory complex, subun	98.33
PF10165	446	Ric8: Guanine nucleotide exchange factor synembryn	98.33
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.3
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.3
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.29
PF00514	41	Arm: Armadillo/beta-catenin-like repeat; InterPro:	98.27
COG5369	743	Uncharacterized conserved protein [Function unknow	98.27
KOG1241	859	consensus Karyopherin (importin) beta 1 [Nuclear s	98.25
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.23
KOG0212	675	consensus Uncharacterized conserved protein [Funct	98.19
PF14664	371	RICTOR_N: Rapamycin-insensitive companion of mTOR,	98.14
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	98.12
KOG2734	536	consensus Uncharacterized conserved protein [Funct	98.09
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	98.07
COG1413	335	FOG: HEAT repeat [Energy production and conversion	98.04
KOG1242	569	consensus Protein containing adaptin N-terminal re	98.0
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.99
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.98
KOG1517	1387	consensus Guanine nucleotide binding protein MIP1	97.98
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.97
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.95
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.86
PF13646	88	HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2I	97.86
KOG1059	877	consensus Vesicle coat complex AP-3, delta subunit	97.76
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.75
COG5369	743	Uncharacterized conserved protein [Function unknow	97.75
KOG1061	734	consensus Vesicle coat complex AP-1/AP-2/AP-4, bet	97.73
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.73
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.73
PF12348	228	CLASP_N: CLASP N terminal; InterPro: IPR024395 Thi	97.71
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	97.7
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.68
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.67
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.66
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.65
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.64
smart00185	41	ARM Armadillo/beta-catenin-like repeats. Approx. 4	97.58
KOG3036	293	consensus Protein involved in cell differentiation	97.58
KOG1062	866	consensus Vesicle coat complex AP-1, gamma subunit	97.56
KOG1824	1233	consensus TATA-binding protein-interacting protein	97.53
KOG0213	1172	consensus Splicing factor 3b, subunit 1 [RNA proce	97.53
COG5240	898	SEC21 Vesicle coat complex COPI, gamma subunit [In	97.53
KOG1060	968	consensus Vesicle coat complex AP-3, beta subunit	97.49
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.46
PF09759	102	Atx10homo_assoc: Spinocerebellar ataxia type 10 pr	97.44
KOG3036	293	consensus Protein involved in cell differentiation	97.41
KOG2259	823	consensus Uncharacterized conserved protein [Funct	97.41
KOG0567	289	consensus HEAT repeat-containing protein [General	97.4
PF04078	262	Rcd1: Cell differentiation family, Rcd1-like ; Int	97.37
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	97.33
PF11841	160	DUF3361: Domain of unknown function (DUF3361)	97.31
KOG1077	938	consensus Vesicle coat complex AP-2, alpha subunit	97.27
PF05004	309	IFRD: Interferon-related developmental regulator (	97.25
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	97.23
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.23
PF13513	55	HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O	97.22
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	97.2
COG5181	975	HSH155 U2 snRNP spliceosome subunit [RNA processin	97.19
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	97.17
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	97.1
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	97.05
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.99
COG5215	858	KAP95 Karyopherin (importin) beta [Intracellular t	96.97
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.96
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.89
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.87
KOG1824	1233	consensus TATA-binding protein-interacting protein	96.87
KOG2032	533	consensus Uncharacterized conserved protein [Funct	96.84
KOG0567	289	consensus HEAT repeat-containing protein [General	96.77
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	96.77
COG5096	757	Vesicle coat complex, various subunits [Intracellu	96.73
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.7
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.69
PF08045	257	CDC14: Cell division control protein 14, SIN compo	96.68
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.68
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.66
KOG1240	1431	consensus Protein kinase containing WD40 repeats [	96.61
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	96.61
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.58
PF12717	178	Cnd1: non-SMC mitotic condensation complex subunit	96.56
KOG4653	982	consensus Uncharacterized conserved protein [Funct	96.51
PF11698	119	V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011	96.5
PF12755	97	Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region	96.42
KOG1248	1176	consensus Uncharacterized conserved protein [Funct	96.39
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.38
COG5231	432	VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Ene	96.35
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	96.34
PF04063	192	DUF383: Domain of unknown function (DUF383); Inter	96.28
KOG1058	948	consensus Vesicle coat complex COPI, beta subunit	96.27
KOG1943	1133	consensus Beta-tubulin folding cofactor D [Posttra	96.26
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	96.12
KOG1078	865	consensus Vesicle coat complex COPI, gamma subunit	96.08
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	96.08
PF07814	361	WAPL: Wings apart-like protein regulation of heter	96.03
PF05004	309	IFRD: Interferon-related developmental regulator (	95.99
PF13764	802	E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4	95.96
KOG0211	759	consensus Protein phosphatase 2A regulatory subuni	95.83
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	95.82
PF05918	556	API5: Apoptosis inhibitory protein 5 (API5); Inter	95.75
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	95.72
PF08569	335	Mo25: Mo25-like; InterPro: IPR013878 Mo25-like pro	95.72
KOG2032	533	consensus Uncharacterized conserved protein [Funct	95.68
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	95.63
PF12719	298	Cnd3: Nuclear condensing complex subunits, C-term	95.6
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	95.54
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	95.52
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	95.5
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	95.35
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	95.31
KOG2999	713	consensus Regulator of Rac1, required for phagocyt	95.25
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	95.23
PF08045	257	CDC14: Cell division control protein 14, SIN compo	95.11
PF11701	157	UNC45-central: Myosin-binding striated muscle asse	94.94
PF06371	187	Drf_GBD: Diaphanous GTPase-binding Domain; InterPr	94.84
PF02985	31	HEAT: HEAT repeat; InterPro: IPR000357 The HEAT re	94.71
KOG4653	982	consensus Uncharacterized conserved protein [Funct	94.68
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	94.65
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	94.52
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	94.52
KOG1967	1030	consensus DNA repair/transcription protein Mms19 [	94.31
PF06025	379	DUF913: Domain of Unknown Function (DUF913); Inter	94.06
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.9
KOG2062	929	consensus 26S proteasome regulatory complex, subun	93.83
KOG1991	1010	consensus Nuclear transport receptor RANBP7/RANBP8	93.83
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	93.76
PLN03076	1780	ARF guanine nucleotide exchange factor (ARF-GEF);	93.74
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.71
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.65
PF14668	73	RICTOR_V: Rapamycin-insensitive companion of mTOR,	93.3
KOG2933	334	consensus Uncharacterized conserved protein [Funct	93.27
KOG0414	1251	consensus Chromosome condensation complex Condensi	93.24
KOG2025	892	consensus Chromosome condensation complex Condensi	93.06
KOG2956	516	consensus CLIP-associating protein [General functi	93.06
PF12031	257	DUF3518: Domain of unknown function (DUF3518); Int	93.01
COG5209	315	RCD1 Uncharacterized protein involved in cell diff	92.95
KOG2274	1005	consensus Predicted importin 9 [Intracellular traf	92.78
PF12460	415	MMS19_C: RNAPII transcription regulator C-terminal	92.53
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	92.45
KOG1832	1516	consensus HIV-1 Vpr-binding protein [Cell cycle co	92.28
PF11707	330	Npa1: Ribosome 60S biogenesis N-terminal; InterPro	92.24
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	92.03
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.83
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.78
KOG1788	2799	consensus Uncharacterized conserved protein [Funct	91.66
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	91.59
KOG0915	1702	consensus Uncharacterized conserved protein [Funct	91.52
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	91.48
KOG2956	516	consensus CLIP-associating protein [General functi	91.29
KOG1243	690	consensus Protein kinase [General function predict	91.29
KOG2611	698	consensus Neurochondrin/leucine-rich protein (Neur	91.28
KOG1820	815	consensus Microtubule-associated protein [Cytoskel	91.28
cd03568	144	VHS_STAM VHS domain family, STAM subfamily; member	91.11
PF11864	464	DUF3384: Domain of unknown function (DUF3384); Int	91.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	90.76
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	90.7
PF07814	361	WAPL: Wings apart-like protein regulation of heter	90.42
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	90.35
KOG2025	892	consensus Chromosome condensation complex Condensi	90.29
cd03561	133	VHS VHS domain family; The VHS domain is present i	89.99
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.92
cd03567	139	VHS_GGA VHS domain family, GGA subfamily; GGA (Gol	89.91
cd03569	142	VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p s	89.84
PF08324	268	PUL: PUL domain; InterPro: IPR013535 The PUL (afte	89.83
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.77
COG5098	1128	Chromosome condensation complex Condensin, subunit	89.75
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	89.53
PF10363	92	DUF2435: Protein of unknown function (DUF2435)	89.53
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	89.34
PF08167	165	RIX1: rRNA processing/ribosome biogenesis	89.28
KOG4535	728	consensus HEAT and armadillo repeat-containing pro	89.27
cd03561	133	VHS VHS domain family; The VHS domain is present i	88.81
COG5218	885	YCG1 Chromosome condensation complex Condensin, su	88.31
PF12530	234	DUF3730: Protein of unknown function (DUF3730) ; I	88.25
KOG1243	690	consensus Protein kinase [General function predict	88.16
KOG2137	700	consensus Protein kinase [Signal transduction mech	87.95
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	87.91
KOG0301	745	consensus Phospholipase A2-activating protein (con	87.69
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	87.65
COG5098	1128	Chromosome condensation complex Condensin, subunit	87.27
KOG2137	700	consensus Protein kinase [Signal transduction mech	87.16
KOG1020	1692	consensus Sister chromatid cohesion protein SCC2/N	86.76
PF08506	370	Cse1: Cse1; InterPro: IPR013713 The exchange of ma	86.22
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	86.21
KOG0301	745	consensus Phospholipase A2-activating protein (con	86.13
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	86.05
PF06685	249	DUF1186: Protein of unknown function (DUF1186); In	85.88
PF01347	618	Vitellogenin_N: Lipoprotein amino terminal region;	85.85
KOG4464	532	consensus Signaling protein RIC-8/synembryn (regul	85.83
smart00288	133	VHS Domain present in VPS-27, Hrs and STAM. Unpubl	85.71
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	85.23
cd03572	122	ENTH_epsin_related ENTH domain, Epsin Related fami	85.07
PF00790	140	VHS: VHS domain; InterPro: IPR002014 The VHS domai	85.07
PF14225	262	MOR2-PAG1_C: Cell morphogenesis C-terminal	83.87
COG5116	926	RPN2 26S proteasome regulatory complex component [	83.15
PF11865	160	DUF3385: Domain of unknown function (DUF3385); Int	83.01
smart00638	574	LPD_N Lipoprotein N-terminal Domain.	82.77
COG5116	926	RPN2 26S proteasome regulatory complex component [	82.26
KOG1848	1610	consensus Uncharacterized conserved protein [Funct	82.13
PF04821	266	TIMELESS: Timeless protein; InterPro: IPR006906 Th	81.57
PF10521	282	DUF2454: Protein of unknown function (DUF2454); In	81.44
PF14500	262	MMS19_N: Dos2-interacting transcription regulator	80.88
PF11791	154	Aconitase_B_N: Aconitate B N-terminal domain; Inte	80.31
KOG1566	342	consensus Conserved protein Mo25 [Function unknown	80.17

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=2.9e-36  Score=279.87  Aligned_cols=321  Identities=19%  Similarity=0.264  Sum_probs=285.8

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      .|.+|.+|.+|. ..++..+.+|+|+|.+++.+. .+.-+.+++.|++|.++.++.+++..++++|+|+|+|++++++.+
T Consensus       108 ~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgt-se~T~~vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~  186 (514)
T KOG0166|consen  108 SGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGT-SEQTKVVVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDC  186 (514)
T ss_pred             cCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCc-hhhccccccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHH
Confidence            399999999997 566999999999999999999 777778899999999999999999999999999999999999999


Q ss_pred             HHHHHHcCChHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          103 KVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      |+.++..|++++|+.++...+. .....+.|+|.||+......+.+ ....++|.|..++++.|..+...|+|+|.+|+.
T Consensus       187 Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~P~P~~~~v~~iLp~L~~ll~~~D~~Vl~Da~WAlsyLsd  266 (514)
T KOG0166|consen  187 RDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKNPSPPFDVVAPILPALLRLLHSTDEEVLTDACWALSYLTD  266 (514)
T ss_pred             HHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCCCCCcHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence            9999999999999999988765 77889999999999987543333 456889999999999999999999999999997


Q ss_pred             C-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHHHHH
Q 017249          181 C-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHAVG  258 (375)
Q Consensus       181 ~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~  258 (375)
                      + ++....+++.|+++.|+.+|.+.+.  .++-.|+++++|++...+.+++.+...|+++.|..++. +....++++|||
T Consensus       267 g~ne~iq~vi~~gvv~~LV~lL~~~~~--~v~~PaLRaiGNIvtG~d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW  344 (514)
T KOG0166|consen  267 GSNEKIQMVIDAGVVPRLVDLLGHSSP--KVVTPALRAIGNIVTGSDEQTQVVINSGALPVLSNLLSSSPKESIKKEACW  344 (514)
T ss_pred             CChHHHHHHHHccchHHHHHHHcCCCc--ccccHHHhhccceeeccHHHHHHHHhcChHHHHHHHhccCcchhHHHHHHH
Confidence            6 5777888899999999999998743  56678999999999999998888888999999999998 566779999999


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh----hhhhhhhHHHHHHHHhhcCCCh
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      +|.|++.+. .+..+++++.|++|.|+.++..++.++|+.|+|++.|++.....    -+++.|+++++...|.  ... 
T Consensus       345 ~iSNItAG~-~~qiqaVida~l~p~Li~~l~~~ef~~rKEAawaIsN~ts~g~~~qi~yLv~~giI~plcdlL~--~~D-  420 (514)
T KOG0166|consen  345 TISNITAGN-QEQIQAVIDANLIPVLINLLQTAEFDIRKEAAWAISNLTSSGTPEQIKYLVEQGIIKPLCDLLT--CPD-  420 (514)
T ss_pred             HHHHhhcCC-HHHHHHHHHcccHHHHHHHHhccchHHHHHHHHHHHhhcccCCHHHHHHHHHcCCchhhhhccc--CCC-
Confidence            999999987 68899999999999999999999999999999999999877733    5789999999998884  333 


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQR  351 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~~  351 (375)
                      .+....+...|.+|.+.
T Consensus       421 ~~ii~v~Ld~l~nil~~  437 (514)
T KOG0166|consen  421 VKIILVALDGLENILKV  437 (514)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            55577777788887654

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=4.9e-33  Score=292.87  Aligned_cols=345  Identities=21%  Similarity=0.249  Sum_probs=298.1

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249           14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL   93 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~   93 (375)
                      +...+..+.+.+.++.||.+|...+.+.|..+++.|.+++.++ ++.+..+++.|+++.|+++|.+++...++.|+++|+
T Consensus       393 N~~l~~~L~~~daik~LV~LL~~~~~evQ~~Av~aL~~L~~~~-~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~  471 (2102)
T PLN03200        393 NAYLSRKLNHAEAKKVLVGLITMATADVQEELIRALSSLCCGK-GGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLA  471 (2102)
T ss_pred             ChHHHHHHHhccchhhhhhhhccCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            3445667778899999999999999999999999999999888 789999999999999999999999999999999999


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH-HHhcCChHHHHHHhccCCHHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAV  172 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~~l~~L~~lL~~~~~~~~~~a~  172 (375)
                      +++.++++++..+++.|++|+|+++|.++++.+++.|+|+|.|++.++++... +...|++++|+++|++++.+++..|+
T Consensus       472 nLa~~ndenr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa  551 (2102)
T PLN03200        472 ILTDEVDESKWAITAAGGIPPLVQLLETGSQKAKEDSATVLWNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAA  551 (2102)
T ss_pred             HHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHH
Confidence            99998889999999999999999999999999999999999999997765444 55789999999999999999999999


Q ss_pred             HHHHHhccCCCCc-------------------------------------hh-hhhcCCcHHHHHHhhhcccchHHHHHH
Q 017249          173 TALHYLSTCKENS-------------------------------------SP-ILDATAVPPLINLLKDCKKYSKFAEKA  214 (375)
Q Consensus       173 ~~L~~L~~~~~~~-------------------------------------~~-i~~~g~i~~Lv~ll~~~~~~~~~~~~a  214 (375)
                      ++|.+|+...+..                                     .. ....|+++.|++++.+++  ..+++.|
T Consensus       552 ~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIlsl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs--~~ikk~A  629 (2102)
T PLN03200        552 KTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVLSVASLEDLVREGSAANDALRTLIQLLSSSK--EETQEKA  629 (2102)
T ss_pred             HHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHHhhcchhHHHHHhhhccccHHHHHHHHcCCC--HHHHHHH
Confidence            9999996432110                                     00 113589999999999874  4678999


Q ss_pred             HHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCH
Q 017249          215 TALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF  293 (375)
Q Consensus       215 ~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  293 (375)
                      +++|.+++.+ ++.+..++ ..|+++.|+.+|.+++..++..|+|+|.+++.+..++.+..+++.|++++|++++.+.+.
T Consensus       630 a~iLsnL~a~~~d~~~avv-~agaIpPLV~LLss~~~~v~keAA~AL~nL~~~~~~~q~~~~v~~GaV~pL~~LL~~~d~  708 (2102)
T PLN03200        630 ASVLADIFSSRQDLCESLA-TDEIINPCIKLLTNNTEAVATQSARALAALSRSIKENRKVSYAAEDAIKPLIKLAKSSSI  708 (2102)
T ss_pred             HHHHHHHhcCChHHHHHHH-HcCCHHHHHHHHhcCChHHHHHHHHHHHHHHhCCCHHHHHHHHHcCCHHHHHHHHhCCCh
Confidence            9999999975 45556666 689999999999999999999999999999987656667788999999999999999999


Q ss_pred             HHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH-HHHH-hHHHHHHHhh
Q 017249          294 EAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR-SMEL-SMTRIQQRAA  365 (375)
Q Consensus       294 ~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~-s~~~-~~~~~~~~~~  365 (375)
                      .+.+.|+.+|.++..+.+.  ++...|++++|+..|.   .|+++.|+.|.++|..|.+. +.+. -...+.++|.
T Consensus       709 ~v~e~Al~ALanLl~~~e~~~ei~~~~~I~~Lv~lLr---~G~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~  781 (2102)
T PLN03200        709 EVAEQAVCALANLLSDPEVAAEALAEDIILPLTRVLR---EGTLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGT  781 (2102)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHHhcCcHHHHHHHHH---hCChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCc
Confidence            9999999999999998854  5678899999999996   78899999999999888654 4444 3344445543

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=100.00  E-value=9.1e-35  Score=251.83  Aligned_cols=325  Identities=17%  Similarity=0.176  Sum_probs=279.1

Q ss_pred             HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      .+.+.|.+|++|+++. ....-.+.+|+|+|.|++.+. ...-+.++++|++|.++++|.++..+++++++|+|+|++++
T Consensus       109 ~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGt-t~QTkvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGD  187 (526)
T COG5064         109 PVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGT-TQQTKVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGD  187 (526)
T ss_pred             hHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCc-ccceEEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCC
Confidence            4556789999999996 455557899999999999998 44445567999999999999999999999999999999999


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcCCC--hHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           99 NERNKVKIATAGAIPPLVELLKFQN--GTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~~~--~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      ++.+|+.+.+.|++++++.++.+..  -.+...+.|+|.||+...... ..-.-...+|.|.+++.+.++++...|+|++
T Consensus       188 S~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcRGknP~P~w~~isqalpiL~KLiys~D~evlvDA~WAi  267 (526)
T COG5064         188 SEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCRGKNPPPDWSNISQALPILAKLIYSRDPEVLVDACWAI  267 (526)
T ss_pred             chhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhCCCCCCCchHHHHHHHHHHHHHHhhcCHHHHHHHHHHH
Confidence            9999999999999999999998764  477889999999999764322 2222346799999999999999999999999


Q ss_pred             HHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249          176 HYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ  254 (375)
Q Consensus       176 ~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~  254 (375)
                      .+|+..+ +....+++.|..+.|+.+|.+.  +..++..+++.++|+....+.+.+++...|+++.+-.+|.++...+++
T Consensus       268 SYlsDg~~E~i~avld~g~~~RLvElLs~~--sa~iqtPalR~vGNIVTG~D~QTqviI~~G~L~a~~~lLs~~ke~irK  345 (526)
T COG5064         268 SYLSDGPNEKIQAVLDVGIPGRLVELLSHE--SAKIQTPALRSVGNIVTGSDDQTQVIINCGALKAFRSLLSSPKENIRK  345 (526)
T ss_pred             HHhccCcHHHHHHHHhcCCcHHHHHHhcCc--cccccCHHHHhhcCeeecCccceehheecccHHHHHHHhcChhhhhhh
Confidence            9999886 6677888999999999999986  446788899999999999888888887899999999999999999999


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC---hh---hhhhhhhHHHHHHHHh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP---QE---KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~---~~---~~~~~g~~~~l~~~l~  328 (375)
                      +|||++.|+..+. .+..+++++.+.+|+|+.++...+..+++.|+|++.|...+.   |.   -++..|++.+|...|.
T Consensus       346 EaCWTiSNITAGn-teqiqavid~nliPpLi~lls~ae~k~kKEACWAisNatsgg~~~PD~iryLv~qG~IkpLc~~L~  424 (526)
T COG5064         346 EACWTISNITAGN-TEQIQAVIDANLIPPLIHLLSSAEYKIKKEACWAISNATSGGLNRPDIIRYLVSQGFIKPLCDLLD  424 (526)
T ss_pred             hhheeecccccCC-HHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHhhhccccCCchHHHHHHHccchhHHHHHHh
Confidence            9999999999987 578999999999999999999999999999999999998766   22   4678999999998775


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHH
Q 017249          329 ARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       329 ~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ...   -+.-+.+..++.++.+.
T Consensus       425 ~~d---Nkiiev~LD~~eniLk~  444 (526)
T COG5064         425 VVD---NKIIEVALDAIENILKV  444 (526)
T ss_pred             ccC---ccchhhhHHHHHHHHhh
Confidence            222   34556666777776543

>PLN03200 cellulose synthase-interactive protein; Provisional

Probab=100.00  E-value=1.3e-31  Score=282.27  Aligned_cols=331  Identities=22%  Similarity=0.213  Sum_probs=284.5

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249           13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL   92 (375)
Q Consensus        13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L   92 (375)
                      ++.+.+..+.+.++++.|+++|.+++...|..|++.|.+++.++ ++++..+++.|++|+|+++|++++.++++.|+|+|
T Consensus       434 ~~~e~~~aIi~~ggIp~LV~LL~s~s~~iQ~~A~~~L~nLa~~n-denr~aIieaGaIP~LV~LL~s~~~~iqeeAawAL  512 (2102)
T PLN03200        434 GKGGLWEALGGREGVQLLISLLGLSSEQQQEYAVALLAILTDEV-DESKWAITAAGGIPPLVQLLETGSQKAKEDSATVL  512 (2102)
T ss_pred             CCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHH
Confidence            44677888999999999999999999999999999999999988 78899999999999999999999999999999999


Q ss_pred             HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh----------------------------
Q 017249           93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK----------------------------  144 (375)
Q Consensus        93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~----------------------------  144 (375)
                      .|++.++++.+..+...|++++|+++|+++++..++.|+++|.+|+.+.+..                            
T Consensus       513 ~NLa~~~~qir~iV~~aGAIppLV~LL~sgd~~~q~~Aa~AL~nLi~~~d~~~I~~Lv~LLlsdd~~~~~~aL~vLgnIl  592 (2102)
T PLN03200        513 WNLCCHSEDIRACVESAGAVPALLWLLKNGGPKGQEIAAKTLTKLVRTADAATISQLTALLLGDLPESKVHVLDVLGHVL  592 (2102)
T ss_pred             HHHhCCcHHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhccchhHHHHHHHHhcCCChhHHHHHHHHHHHHH
Confidence            9999976677777778999999999999999999999999999996432211                            


Q ss_pred             ---------hH-HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249          145 ---------PA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEK  213 (375)
Q Consensus       145 ---------~~-i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  213 (375)
                               .. ....|+++.|++++++++..+++.|+++|.+++.+ ++++..++..|++++++.++.+++  ..++..
T Consensus       593 sl~~~~d~~~~g~~~~ggL~~Lv~LL~sgs~~ikk~Aa~iLsnL~a~~~d~~~avv~agaIpPLV~LLss~~--~~v~ke  670 (2102)
T PLN03200        593 SVASLEDLVREGSAANDALRTLIQLLSSSKEETQEKAASVLADIFSSRQDLCESLATDEIINPCIKLLTNNT--EAVATQ  670 (2102)
T ss_pred             hhcchhHHHHHhhhccccHHHHHHHHcCCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCC--hHHHHH
Confidence                     00 11358999999999999999999999999999976 467888999999999999999874  357788


Q ss_pred             HHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249          214 ATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  291 (375)
Q Consensus       214 a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~  291 (375)
                      +.++|.|++.  .+.++..++ +.|+++.|+.+|.+.+..+++.|+.+|.|++.+.  +.+..+...|+++.|+++++++
T Consensus       671 AA~AL~nL~~~~~~~q~~~~v-~~GaV~pL~~LL~~~d~~v~e~Al~ALanLl~~~--e~~~ei~~~~~I~~Lv~lLr~G  747 (2102)
T PLN03200        671 SARALAALSRSIKENRKVSYA-AEDAIKPLIKLAKSSSIEVAEQAVCALANLLSDP--EVAAEALAEDIILPLTRVLREG  747 (2102)
T ss_pred             HHHHHHHHHhCCCHHHHHHHH-HcCCHHHHHHHHhCCChHHHHHHHHHHHHHHcCc--hHHHHHHhcCcHHHHHHHHHhC
Confidence            9999999985  344455666 6899999999999999999999999999999987  6688888999999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChh------hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          292 TFEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       292 ~~~~~~~A~~~L~~l~~~~~~------~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      +++.|++|+++|..|+++.+.      .+...|.+.+|+..|. ..|+.-..--.|...|.+|.+
T Consensus       748 ~~~~k~~Aa~AL~~L~~~~~~~~~~~~~~~~~g~v~~l~~~L~-~~~~~~~~~~~al~~l~~l~~  811 (2102)
T PLN03200        748 TLEGKRNAARALAQLLKHFPVDDVLKDSVQCRGTVLALVDLLN-STDLDSSATSEALEALALLAR  811 (2102)
T ss_pred             ChHHHHHHHHHHHHHHhCCChhHHHHHHHHHhCcHHHHHHHHh-cCCcchhhHHHHHHHHHHHHh
Confidence            999999999999999987753      3467899999998886 355534444457777777754

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=1.6e-32  Score=239.78  Aligned_cols=327  Identities=21%  Similarity=0.278  Sum_probs=294.2

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249           13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL   92 (375)
Q Consensus        13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L   92 (375)
                      -+.+++.-+++..++..|+..+.++..++|..++.+|.+++..+  +++..+...|++.++..+-++.+..+|+.+..+|
T Consensus       114 Vn~enk~liv~l~Gl~~Li~qmmtd~vevqcnaVgCitnLaT~d--~nk~kiA~sGaL~pltrLakskdirvqrnatgaL  191 (550)
T KOG4224|consen  114 VNMENKGLIVSLLGLDLLILQMMTDGVEVQCNAVGCITNLATFD--SNKVKIARSGALEPLTRLAKSKDIRVQRNATGAL  191 (550)
T ss_pred             eccCCceEEEeccChHHHHHHhcCCCcEEEeeehhhhhhhhccc--cchhhhhhccchhhhHhhcccchhhHHHHHHHHH
Confidence            34556667788889999999999999999999999999999998  8999999999999999988999999999999999


Q ss_pred             HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcC--ChHHHHHHhccCCHHHHHH
Q 017249           93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASG--AAPLLVQILHSGSVQGRVD  170 (375)
Q Consensus        93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~--~l~~L~~lL~~~~~~~~~~  170 (375)
                      .++++ ..++|..++..|++|.|+++++++++++++.+..++.|++.+...+..+...+  .++.|++++++++++++-.
T Consensus       192 lnmTh-s~EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisnIaVd~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcq  270 (550)
T KOG4224|consen  192 LNMTH-SRENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISNIAVDRRARKILAQAEPKLVPALVDLMDDGSDKVKCQ  270 (550)
T ss_pred             HHhhh-hhhhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhhhhhhHHHHHHHHhcccchHHHHHHHHhCCChHHHHH
Confidence            99999 78999999999999999999999999999999999999999988888887655  9999999999999999999


Q ss_pred             HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-
Q 017249          171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-  249 (375)
Q Consensus       171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-  249 (375)
                      |..+|.||+.+.+....+++.|.+|.++++++++.  .........+++|++.+|-+-.-++ +.|++..|+.+|+.++ 
T Consensus       271 A~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~--~plilasVaCIrnisihplNe~lI~-dagfl~pLVrlL~~~dn  347 (550)
T KOG4224|consen  271 AGLALRNLASDTEYQREIVEAGSLPLLVELLQSPM--GPLILASVACIRNISIHPLNEVLIA-DAGFLRPLVRLLRAGDN  347 (550)
T ss_pred             HHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcc--hhHHHHHHHHHhhcccccCccccee-cccchhHHHHHHhcCCc
Confidence            99999999999999999999999999999998753  3345567889999999999988888 7999999999998655 


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC--hhhhhhhhhHHHHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP--QEKRLSSSVLEKIVYDI  327 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~--~~~~~~~g~~~~l~~~l  327 (375)
                      ++++-.|+.+|+||+... ...+..+.+.|++|.|.+++.+++-.+|..-..++..|+-..  ...+...|.++.|+..+
T Consensus       348 EeiqchAvstLrnLAass-e~n~~~i~esgAi~kl~eL~lD~pvsvqseisac~a~Lal~d~~k~~lld~gi~~iLIp~t  426 (550)
T KOG4224|consen  348 EEIQCHAVSTLRNLAASS-EHNVSVIRESGAIPKLIELLLDGPVSVQSEISACIAQLALNDNDKEALLDSGIIPILIPWT  426 (550)
T ss_pred             hhhhhhHHHHHHHHhhhh-hhhhHHHhhcCchHHHHHHHhcCChhHHHHHHHHHHHHHhccccHHHHhhcCCcceeeccc
Confidence            669999999999999976 467889999999999999999999999999999888887555  44678899999998776


Q ss_pred             hhcCCChHHHHHHHHHHHHHHH
Q 017249          328 AARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       328 ~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      .   +-+...+..|+++|-+|.
T Consensus       427 ~---s~s~Ev~gNaAaAL~Nls  445 (550)
T KOG4224|consen  427 G---SESEEVRGNAAAALINLS  445 (550)
T ss_pred             C---ccchhhcccHHHHHHhhh
Confidence            5   445888899999999996

>KOG0166 consensus Karyopherin (importin) alpha [Intracellular trafficking, secretion, and vesicular transport]

Probab=100.00  E-value=9.1e-31  Score=243.36  Aligned_cols=322  Identities=20%  Similarity=0.258  Sum_probs=279.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+.++..+.|+++..+..+...++.+.........+.++..|.|+.+|++|.. .++.++..|+|+|.|++.++.+.-..
T Consensus        68 ~~~~~~~~~S~~~~~q~~a~~~~rkllS~~~~ppi~~vi~~G~v~~lV~~l~~~~~~~lq~eAAWaLTnIAsgtse~T~~  147 (514)
T KOG0166|consen   68 LELMLAALYSDDPQQQLTATQAFRKLLSKERNPPIDEVIQSGVVPRLVEFLSRDDNPTLQFEAAWALTNIASGTSEQTKV  147 (514)
T ss_pred             hHHHHHHHhCCCHHHHHHHHHHHHHHHccCCCCCHHHHHHcCcHHHHHHHHccCCChhHHHHHHHHHHHHhcCchhhccc
Confidence            78888889999999999999999999876633445666677999999999975 46999999999999999999999999


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccCCC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~  183 (375)
                      +++.|++|.|+.++.+++..+++.|+|+|.|++.+.+ .+..+...|++++|+.++...+. ...+.+.|+|.|||.+..
T Consensus       148 vv~agavp~fi~Ll~s~~~~v~eQavWALgNIagds~~~Rd~vl~~g~l~pLl~~l~~~~~~~~lRn~tW~LsNlcrgk~  227 (514)
T KOG0166|consen  148 VVDAGAVPIFIQLLSSPSADVREQAVWALGNIAGDSPDCRDYVLSCGALDPLLRLLNKSDKLSMLRNATWTLSNLCRGKN  227 (514)
T ss_pred             cccCCchHHHHHHhcCCcHHHHHHHHHHHhccccCChHHHHHHHhhcchHHHHHHhccccchHHHHHHHHHHHHHHcCCC
Confidence            9999999999999999999999999999999999876 68888899999999999988875 789999999999998754


Q ss_pred             Cchhhh-hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249          184 NSSPIL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  262 (375)
Q Consensus       184 ~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  262 (375)
                      ....+. -..++|.|..++.+.  +..+...++|++++|+..+..+.+++.+.|+++.|+.+|.+.+..++..|++++.|
T Consensus       228 P~P~~~~v~~iLp~L~~ll~~~--D~~Vl~Da~WAlsyLsdg~ne~iq~vi~~gvv~~LV~lL~~~~~~v~~PaLRaiGN  305 (514)
T KOG0166|consen  228 PSPPFDVVAPILPALLRLLHST--DEEVLTDACWALSYLTDGSNEKIQMVIDAGVVPRLVDLLGHSSPKVVTPALRAIGN  305 (514)
T ss_pred             CCCcHHHHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHHhcCChHHHHHHHHccchHHHHHHHcCCCcccccHHHhhccc
Confidence            333332 256899999999987  55677889999999997665555555589999999999999999999999999999


Q ss_pred             hcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHH
Q 017249          263 LCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAA  338 (375)
Q Consensus       263 l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~  338 (375)
                      ++.++ +...+.++..|+++.|..++. +....+++.|+|++.|++-..++   .++..|++|.|+..|.   .+.-+.+
T Consensus       306 IvtG~-d~QTq~vi~~~~L~~l~~ll~~s~~~~ikkEAcW~iSNItAG~~~qiqaVida~l~p~Li~~l~---~~ef~~r  381 (514)
T KOG0166|consen  306 IVTGS-DEQTQVVINSGALPVLSNLLSSSPKESIKKEACWTISNITAGNQEQIQAVIDANLIPVLINLLQ---TAEFDIR  381 (514)
T ss_pred             eeecc-HHHHHHHHhcChHHHHHHHhccCcchhHHHHHHHHHHHhhcCCHHHHHHHHHcccHHHHHHHHh---ccchHHH
Confidence            99988 577888999999999999998 55667999999999999988754   7889999999999886   5668999


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          339 ETAKRLLQDMVQRSME  354 (375)
Q Consensus       339 ~~a~~~l~~l~~~s~~  354 (375)
                      ..|++++.|+...+-+
T Consensus       382 KEAawaIsN~ts~g~~  397 (514)
T KOG0166|consen  382 KEAAWAISNLTSSGTP  397 (514)
T ss_pred             HHHHHHHHhhcccCCH
Confidence            9999999999765543

>KOG4224 consensus Armadillo repeat protein VAC8 required for vacuole fusion, inheritance and cytosol-to-vacuole protein targeting [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.98  E-value=2e-30  Score=226.78  Aligned_cols=327  Identities=22%  Similarity=0.277  Sum_probs=290.9

Q ss_pred             hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      ++++..+...|++.++.++-++.+..+|..+..+|.++....  ++|..++..|++|.||+++++++.++|..++.++.+
T Consensus       157 d~nk~kiA~sGaL~pltrLakskdirvqrnatgaLlnmThs~--EnRr~LV~aG~lpvLVsll~s~d~dvqyycttaisn  234 (550)
T KOG4224|consen  157 DSNKVKIARSGALEPLTRLAKSKDIRVQRNATGALLNMTHSR--ENRRVLVHAGGLPVLVSLLKSGDLDVQYYCTTAISN  234 (550)
T ss_pred             ccchhhhhhccchhhhHhhcccchhhHHHHHHHHHHHhhhhh--hhhhhhhccCCchhhhhhhccCChhHHHHHHHHhhh
Confidence            567888999999999999778999999999999999999887  999999999999999999999999999999999999


Q ss_pred             hhccChhhHHHHHHcC--ChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249           95 LAVRNERNKVKIATAG--AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV  172 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g--~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~  172 (375)
                      ++- +...|..+.+.+  .+|.|+++++++++.++..|..+|.||+.+.+.+..+++.|++|.++++|+++.........
T Consensus       235 IaV-d~~~Rk~Laqaep~lv~~Lv~Lmd~~s~kvkcqA~lALrnlasdt~Yq~eiv~ag~lP~lv~Llqs~~~plilasV  313 (550)
T KOG4224|consen  235 IAV-DRRARKILAQAEPKLVPALVDLMDDGSDKVKCQAGLALRNLASDTEYQREIVEAGSLPLLVELLQSPMGPLILASV  313 (550)
T ss_pred             hhh-hHHHHHHHHhcccchHHHHHHHHhCCChHHHHHHHHHHhhhcccchhhhHHHhcCCchHHHHHHhCcchhHHHHHH
Confidence            998 678999999987  99999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249          173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLV  251 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~  251 (375)
                      .++.|++..+-|...|++.|.+.+||++|+.++ .+.++..|...|+||+. +..+++.+. +.|+++.+..++.++.-.
T Consensus       314 aCIrnisihplNe~lI~dagfl~pLVrlL~~~d-nEeiqchAvstLrnLAasse~n~~~i~-esgAi~kl~eL~lD~pvs  391 (550)
T KOG4224|consen  314 ACIRNISIHPLNEVLIADAGFLRPLVRLLRAGD-NEEIQCHAVSTLRNLAASSEHNVSVIR-ESGAIPKLIELLLDGPVS  391 (550)
T ss_pred             HHHhhcccccCcccceecccchhHHHHHHhcCC-chhhhhhHHHHHHHHhhhhhhhhHHHh-hcCchHHHHHHHhcCChh
Confidence            999999999999999999999999999999875 45688899999999998 566666666 799999999999999999


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--hhhh------hhhHHHH
Q 017249          252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLS------SSVLEKI  323 (375)
Q Consensus       252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~------~g~~~~l  323 (375)
                      +|+.-..++..|+..+  ..+..+.+.|.++.|+.+..+.+.+++-+|+.+|.|+++....  ++++      .|.-..|
T Consensus       392 vqseisac~a~Lal~d--~~k~~lld~gi~~iLIp~t~s~s~Ev~gNaAaAL~Nlss~v~~YarviEawd~P~~gi~g~L  469 (550)
T KOG4224|consen  392 VQSEISACIAQLALND--NDKEALLDSGIIPILIPWTGSESEEVRGNAAAALINLSSDVEHYARVIEAWDHPVQGIQGRL  469 (550)
T ss_pred             HHHHHHHHHHHHHhcc--ccHHHHhhcCCcceeecccCccchhhcccHHHHHHhhhhhhHHHHHHHHHhcCcchhHHHHH
Confidence            9999999999998886  4588999999999999999999999999999999999987744  2222      4455566


Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          324 VYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       324 ~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ++.+.+   ...--+..|.+.+++|.+.
T Consensus       470 ~Rfl~S---~~~tf~hia~wTI~qLle~  494 (550)
T KOG4224|consen  470 ARFLAS---HELTFRHIARWTIQQLLED  494 (550)
T ss_pred             HHHHhh---hHHHHHHHHHHHHHHHHHh
Confidence            666652   2255668888888888654

>COG5064 SRP1 Karyopherin (importin) alpha [Intracellular trafficking and secretion]

Probab=99.97  E-value=2.5e-29  Score=218.10  Aligned_cols=318  Identities=19%  Similarity=0.207  Sum_probs=271.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      .-+|.|...|.|+|.+.+..|..-++.+.........+.+++.|++|.+++++ +....-.+..|+|+|.|++.+....-
T Consensus        71 ~elp~lt~~l~SdDie~q~qav~kFR~~LS~E~~PPIq~VIdaGvVpRfvefm~~~q~~mlqfEAaWalTNiaSGtt~QT  150 (526)
T COG5064          71 SELPQLTQQLFSDDIEQQLQAVYKFRKLLSKETSPPIQPVIDAGVVPRFVEFMDEIQRDMLQFEAAWALTNIASGTTQQT  150 (526)
T ss_pred             hhhHHHHHHHhhhHHHHHHHHHHHHHHHhccccCCCchhHHhccccHHHHHHHHhcchhHHHHHHHHHHhhhccCcccce
Confidence            35799999999999999999999999988766345677889999999999999 44555668899999999999877666


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCH--HHHHHHHHHHHHhcc
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSV--QGRVDAVTALHYLST  180 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~--~~~~~a~~~L~~L~~  180 (375)
                      .-+++.|++|.++++|.+.+.++++.++|+|.|++.+.+ .+..+...|++++++.+|.+...  ...+++.|+|.|||.
T Consensus       151 kvVvd~~AVPlfiqlL~s~~~~V~eQavWALGNiAGDS~~~RD~vL~~galeplL~ll~ss~~~ismlRn~TWtLSNlcR  230 (526)
T COG5064         151 KVVVDAGAVPLFIQLLSSTEDDVREQAVWALGNIAGDSEGCRDYVLQCGALEPLLGLLLSSAIHISMLRNATWTLSNLCR  230 (526)
T ss_pred             EEEEeCCchHHHHHHHcCchHHHHHHHHHHhccccCCchhHHHHHHhcCchHHHHHHHHhccchHHHHHHhHHHHHHhhC
Confidence            677889999999999999999999999999999999876 68888899999999999987754  789999999999997


Q ss_pred             CC---CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249          181 CK---ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV  257 (375)
Q Consensus       181 ~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~  257 (375)
                      +.   ++...+  +..+|.|.+++.+.  ++.+...|+|+++.|+..+..+.+++.+.|...+|+++|.+++..++..|+
T Consensus       231 GknP~P~w~~i--sqalpiL~KLiys~--D~evlvDA~WAiSYlsDg~~E~i~avld~g~~~RLvElLs~~sa~iqtPal  306 (526)
T COG5064         231 GKNPPPDWSNI--SQALPILAKLIYSR--DPEVLVDACWAISYLSDGPNEKIQAVLDVGIPGRLVELLSHESAKIQTPAL  306 (526)
T ss_pred             CCCCCCchHHH--HHHHHHHHHHHhhc--CHHHHHHHHHHHHHhccCcHHHHHHHHhcCCcHHHHHHhcCccccccCHHH
Confidence            62   233333  34789999999876  445667799999999987766666665899999999999999999999999


Q ss_pred             HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249          258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      +.+.|+..+++ ...+.++..|+++.+..++.+....+|+.|+|.+.|++-...+   .++....+|+|+..|.   ...
T Consensus       307 R~vGNIVTG~D-~QTqviI~~G~L~a~~~lLs~~ke~irKEaCWTiSNITAGnteqiqavid~nliPpLi~lls---~ae  382 (526)
T COG5064         307 RSVGNIVTGSD-DQTQVIINCGALKAFRSLLSSPKENIRKEACWTISNITAGNTEQIQAVIDANLIPPLIHLLS---SAE  382 (526)
T ss_pred             HhhcCeeecCc-cceehheecccHHHHHHHhcChhhhhhhhhheeecccccCCHHHHHHHHhcccchHHHHHHH---HHH
Confidence            99999999884 5677889999999999999999899999999999999877633   6788999999998885   334


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQ  350 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~  350 (375)
                      -+.+..|++++-+...
T Consensus       383 ~k~kKEACWAisNats  398 (526)
T COG5064         383 YKIKKEACWAISNATS  398 (526)
T ss_pred             HHHHHHHHHHHHhhhc
Confidence            7788899998888763

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.92  E-value=3.1e-22  Score=196.32  Aligned_cols=332  Identities=19%  Similarity=0.216  Sum_probs=276.1

Q ss_pred             chhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH
Q 017249           12 TDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLA   91 (375)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~   91 (375)
                      +.|..+...+...+.++.|++.|.+++.+....++.+|.+|+...  +++..|.+.|+++.|++++.+++.+++..+++.
T Consensus       277 Aed~~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi~~--ENK~~m~~~giV~kL~kLl~s~~~~l~~~aLrl  354 (708)
T PF05804_consen  277 AEDPRVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSIFK--ENKDEMAESGIVEKLLKLLPSENEDLVNVALRL  354 (708)
T ss_pred             hcChHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHhcCCCHHHHHHHHHH
Confidence            456677788899999999999999999999999999999999998  899999999999999999999999999999999


Q ss_pred             HHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-CCHHHHHH
Q 017249           92 LLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVD  170 (375)
Q Consensus        92 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~  170 (375)
                      |.||+. ++..|..|+..|++|+|+.+|.++  ..+..++.+|.++|.+++++..+...++++.+++++.. ++..+...
T Consensus       355 L~NLSf-d~~~R~~mV~~GlIPkLv~LL~d~--~~~~val~iLy~LS~dd~~r~~f~~TdcIp~L~~~Ll~~~~~~v~~e  431 (708)
T PF05804_consen  355 LFNLSF-DPELRSQMVSLGLIPKLVELLKDP--NFREVALKILYNLSMDDEARSMFAYTDCIPQLMQMLLENSEEEVQLE  431 (708)
T ss_pred             HHHhCc-CHHHHHHHHHCCCcHHHHHHhCCC--chHHHHHHHHHHhccCHhhHHHHhhcchHHHHHHHHHhCCCccccHH
Confidence            999999 688999999999999999999754  45677999999999999999999989999999998755 45667778


Q ss_pred             HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc------------------------------------cchHHHHHH
Q 017249          171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCK------------------------------------KYSKFAEKA  214 (375)
Q Consensus       171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~------------------------------------~~~~~~~~a  214 (375)
                      +++++.||+.++.+.+.+.+.++++.|++...+..                                    +++...-.+
T Consensus       432 liaL~iNLa~~~rnaqlm~~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~k~~f~~~i~~L~~~v~~~~~ee~~vE~  511 (708)
T PF05804_consen  432 LIALLINLALNKRNAQLMCEGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPLKELFVDFIGDLAKIVSSGDSEEFVVEC  511 (708)
T ss_pred             HHHHHHHHhcCHHHHHHHHhcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhcCCcHHHHHHH
Confidence            88999999999888888887777777665332211                                    133455668


Q ss_pred             HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--
Q 017249          215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--  290 (375)
Q Consensus       215 ~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--  290 (375)
                      +++|+||...+.....++.+.+.+|.|..+|..+  .+.+..+++..++.+|...  ++...+.+.|.++.|+.++..  
T Consensus       512 LGiLaNL~~~~ld~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla~d~--~~A~lL~~sgli~~Li~LL~~kq  589 (708)
T PF05804_consen  512 LGILANLTIPDLDWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLASDP--ECAPLLAKSGLIPTLIELLNAKQ  589 (708)
T ss_pred             HHHHHhcccCCcCHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHHCCH--HHHHHHHhCChHHHHHHHHHhhC
Confidence            8999999877667777776789999999999764  3578888999999988764  778888899999999999985  


Q ss_pred             CCHHHHHHHHHHHHHhhcCChh--hhh-hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHH
Q 017249          291 GTFEAQERARTLLDLLRDTPQE--KRL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM  353 (375)
Q Consensus       291 ~~~~~~~~A~~~L~~l~~~~~~--~~~-~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~  353 (375)
                      .|.+..-..+.+...+-.|...  .++ +.+++.-|+..++   |..+..+..+-.+|..+.....
T Consensus       590 eDdE~VlQil~~f~~ll~h~~tr~~ll~~~~~~~ylidL~~---d~N~~ir~~~d~~Ldii~e~d~  652 (708)
T PF05804_consen  590 EDDEIVLQILYVFYQLLFHEETREVLLKETEIPAYLIDLMH---DKNAEIRKVCDNALDIIAEYDE  652 (708)
T ss_pred             chHHHHHHHHHHHHHHHcChHHHHHHHhccchHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhCH
Confidence            4688888888888888777733  343 3667777887775   5668889999999888875543

>PF05804 KAP: Kinesin-associated protein (KAP)

Probab=99.88  E-value=1.4e-19  Score=177.75  Aligned_cols=297  Identities=20%  Similarity=0.221  Sum_probs=241.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249           28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA  107 (375)
Q Consensus        28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~  107 (375)
                      +++-.+++.. ......++..|.|++.+.  .....|.+.|+++.|+++|.+++.++...++..|.+|+. ..+++..|.
T Consensus       253 kk~~~l~~kQ-eqLlrv~~~lLlNLAed~--~ve~kM~~~~iV~~Lv~~Ldr~n~ellil~v~fLkkLSi-~~ENK~~m~  328 (708)
T PF05804_consen  253 KKLQTLIRKQ-EQLLRVAFYLLLNLAEDP--RVELKMVNKGIVSLLVKCLDRENEELLILAVTFLKKLSI-FKENKDEMA  328 (708)
T ss_pred             HHHHHHHHHH-HHHHHHHHHHHHHHhcCh--HHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHH
Confidence            3444444332 334456778899999998  888889999999999999999999999999999999999 678999999


Q ss_pred             HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchh
Q 017249          108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSP  187 (375)
Q Consensus       108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~  187 (375)
                      +.|++++|++++.+++.+++..++.+|.|||.+++.+..++..|++|.|+.+|.+++  .+..++.+|++||..++.+..
T Consensus       329 ~~giV~kL~kLl~s~~~~l~~~aLrlL~NLSfd~~~R~~mV~~GlIPkLv~LL~d~~--~~~val~iLy~LS~dd~~r~~  406 (708)
T PF05804_consen  329 ESGIVEKLLKLLPSENEDLVNVALRLLFNLSFDPELRSQMVSLGLIPKLVELLKDPN--FREVALKILYNLSMDDEARSM  406 (708)
T ss_pred             HcCCHHHHHHHhcCCCHHHHHHHHHHHHHhCcCHHHHHHHHHCCCcHHHHHHhCCCc--hHHHHHHHHHHhccCHhhHHH
Confidence            999999999999999999999999999999999999999999999999999998764  456789999999999999999


Q ss_pred             hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh----------------------
Q 017249          188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV----------------------  245 (375)
Q Consensus       188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL----------------------  245 (375)
                      +...+++|.+++++.+++. ..+...+.+++.|++.++.+.+.+. +.|+++.|+...                      
T Consensus       407 f~~TdcIp~L~~~Ll~~~~-~~v~~eliaL~iNLa~~~rnaqlm~-~g~gL~~L~~ra~~~~D~lLlKlIRNiS~h~~~~  484 (708)
T PF05804_consen  407 FAYTDCIPQLMQMLLENSE-EEVQLELIALLINLALNKRNAQLMC-EGNGLQSLMKRALKTRDPLLLKLIRNISQHDGPL  484 (708)
T ss_pred             HhhcchHHHHHHHHHhCCC-ccccHHHHHHHHHHhcCHHHHHHHH-hcCcHHHHHHHHHhcccHHHHHHHHHHHhcCchH
Confidence            9889999999999877643 3444556788888888888887777 456666655432                      


Q ss_pred             ---------------cc-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhh
Q 017249          246 ---------------ED-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLR  307 (375)
Q Consensus       246 ---------------~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~  307 (375)
                                     .. .++...-.++++|.|+...+. +....+.+.+.+|.|..++..+  .+++.-.++.+++.++
T Consensus       485 k~~f~~~i~~L~~~v~~~~~ee~~vE~LGiLaNL~~~~l-d~~~ll~~~~llp~L~~~L~~g~~~dDl~LE~Vi~~gtla  563 (708)
T PF05804_consen  485 KELFVDFIGDLAKIVSSGDSEEFVVECLGILANLTIPDL-DWAQLLQEYNLLPWLKDLLKPGASEDDLLLEVVILLGTLA  563 (708)
T ss_pred             HHHHHHHHHHHHHHhhcCCcHHHHHHHHHHHHhcccCCc-CHHHHHHhCCHHHHHHHHhCCCCCChHHHHHHHHHHHHHH
Confidence                           11 245566688999999987652 3345555689999999998754  4678889999999998


Q ss_pred             cCChh--hhhhhhhHHHHHHHHhhcCCC
Q 017249          308 DTPQE--KRLSSSVLEKIVYDIAARVDG  333 (375)
Q Consensus       308 ~~~~~--~~~~~g~~~~l~~~l~~~~~g  333 (375)
                      ..+..  .+.+.|+++.|+..|....+.
T Consensus       564 ~d~~~A~lL~~sgli~~Li~LL~~kqeD  591 (708)
T PF05804_consen  564 SDPECAPLLAKSGLIPTLIELLNAKQED  591 (708)
T ss_pred             CCHHHHHHHHhCChHHHHHHHHHhhCch
Confidence            87643  566789999999988765554

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.87  E-value=3.3e-20  Score=178.31  Aligned_cols=332  Identities=19%  Similarity=0.199  Sum_probs=261.6

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh-
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER-  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~-  101 (375)
                      +.-.+|..|.+|.+.++..|..|+..+..++..+ .+.+..+.+.|+|+.||.+|.+...+++.+|+++|+||..++.. 
T Consensus       231 ~d~~lpe~i~mL~~q~~~~qsnaaaylQHlcfgd-~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~~~~  309 (717)
T KOG1048|consen  231 RDPTLPEVISMLMSQDPSVQSNAAAYLQHLCFGD-NKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGKSTD  309 (717)
T ss_pred             cccccHHHHHHHhccChhhhHHHHHHHHHHHhhh-HHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhcccCCc
Confidence            4556789999999999999999999999999999 88888888999999999999999999999999999999987766 


Q ss_pred             -hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc--------------CCH
Q 017249          102 -NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS--------------GSV  165 (375)
Q Consensus       102 -~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~--------------~~~  165 (375)
                       ++..+.+.++|+.++++|+. .|.++++.+..+||||+.++..+..+... .+..|.+.+-.              .+.
T Consensus       310 ~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg~LWNLSS~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~  388 (717)
T KOG1048|consen  310 SNKLAIKELNGVPTLVRLLRHTQDDEVRELITGILWNLSSNDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDS  388 (717)
T ss_pred             ccchhhhhcCChHHHHHHHHhhcchHHHHHHHHHHhcccchhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccc
Confidence             99999999999999999987 59999999999999999997777666533 34555544311              125


Q ss_pred             HHHHHHHHHHHHhcc-CCCCchhhhh-cCCcHHHHHHhhh----cccchHHHHHHHHHHHHhhCChh-----hhHHHhh-
Q 017249          166 QGRVDAVTALHYLST-CKENSSPILD-ATAVPPLINLLKD----CKKYSKFAEKATALLEILSSSEE-----GRIAITN-  233 (375)
Q Consensus       166 ~~~~~a~~~L~~L~~-~~~~~~~i~~-~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~-  233 (375)
                      ++..++..+|.|++. ..+.++.+.+ .|.|..|+..+.+    +..+....++|.-+|+||+..-+     ...+... 
T Consensus       389 ~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLIdaL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~  468 (717)
T KOG1048|consen  389 TVFRNVTGCLRNLSSAGQEAREQMRECDGLIDALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLAN  468 (717)
T ss_pred             eeeehhhhhhccccchhHHHHHHHhhccchHHHHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhc
Confidence            678899999999997 5677888876 6999999988874    23345677999999999986322     0000000 


Q ss_pred             -----------------------------------------------ccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcc
Q 017249          234 -----------------------------------------------SDGGILTLVETVE-DGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       234 -----------------------------------------------~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~  265 (375)
                                                                     ..-+|..-+.+|. +.++.+.+.++++|-|++.
T Consensus       469 ~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~n~~TlEasaGaLQNltA  548 (717)
T KOG1048|consen  469 IARLPGVGPPAESVGCFGFKKRKSDDNCDDLPIPERATAPKGSEWLWHPSVVRPYLLLLALSKNDNTLEASAGALQNLTA  548 (717)
T ss_pred             ccccccCCCcccccccccchhhhchhcccccCCcccccCCCCceeeecHHHHHHHHHHHHHhcchHHHHHhhhhHhhhhc
Confidence                                                           0111222123332 4568899999999999998


Q ss_pred             cCcH---HHHHHH-HHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCCC---hHHH
Q 017249          266 SCRD---KYRQLI-LKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG---ADKA  337 (375)
Q Consensus       266 ~~~~---~~~~~l-~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~g---~~~~  337 (375)
                      +...   ..+..+ .++.+.+.|+++++.+++.+.+.++.+|+|++.+.+. ..+.-++++.|+..|..+..+   +.+.
T Consensus       549 ~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~~~vv~s~a~~LrNls~d~rnk~ligk~a~~~lv~~Lp~~~~~~~~sedt  628 (717)
T KOG1048|consen  549 GLWTWSEYMRGAVFRKEKGLPPLVELLRNDDSDVVRSAAGALRNLSRDIRNKELIGKYAIPDLVRCLPGSGPSTSLSEDT  628 (717)
T ss_pred             cCCcchhHHHhhhhhhccCccHHHHHHhcCCchHHHHHHHHHhhhccCchhhhhhhcchHHHHHHhCcCCCCCcCchHHH
Confidence            7542   334445 5688999999999999999999999999999999966 678888999999998754441   2666


Q ss_pred             HHHHHHHHHHHHHHHHHHh
Q 017249          338 AETAKRLLQDMVQRSMELS  356 (375)
Q Consensus       338 ~~~a~~~l~~l~~~s~~~~  356 (375)
                      ...+...|.+|++.++..-
T Consensus       629 v~~vc~tl~niv~~~~~nA  647 (717)
T KOG1048|consen  629 VRAVCHTLNNIVRKNVLNA  647 (717)
T ss_pred             HHHHHHhHHHHHHHhHHHH
Confidence            7777888888887766543

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.86  E-value=6.9e-21  Score=190.19  Aligned_cols=269  Identities=22%  Similarity=0.217  Sum_probs=231.2

Q ss_pred             HHHH-HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC------------CHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           40 ETKI-EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP------------NLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        40 ~~~~-~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~------------~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      +-++ .|+..|.+++++.  ++|+.|-+.|++..+-++|.-.            ...++..+..+|.||+.++..++..+
T Consensus       312 ~H~lcaA~~~lMK~SFDE--EhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTFGDv~NKa~L  389 (2195)
T KOG2122|consen  312 EHQLCAALCTLMKLSFDE--EHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTFGDVANKATL  389 (2195)
T ss_pred             chhhHHHHHHHHHhhccH--HHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhccccccccchhhh
Confidence            4455 6778888888887  9999999999999998877421            24689999999999999999999999


Q ss_pred             HH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-C-hhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhccC-
Q 017249          107 AT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-N-KPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTC-  181 (375)
Q Consensus       107 ~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~-~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~~-  181 (375)
                      +. -|+++.+|..|.+..+++.+..+.+|.||++..+ + +..+.+.|.+..|..+- +..........+.+||||+.+ 
T Consensus       390 Cs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~kEsTLKavLSALWNLSAHc  469 (2195)
T KOG2122|consen  390 CSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNKKESTLKAVLSALWNLSAHC  469 (2195)
T ss_pred             hhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhcccchHHHHHHHHhhhhhcc
Confidence            98 6899999999999999999999999999999855 3 66777889999998874 444557788999999999966 


Q ss_pred             CCCchhhhh-cCCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249          182 KENSSPILD-ATAVPPLINLLKDC--KKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQ  254 (375)
Q Consensus       182 ~~~~~~i~~-~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~  254 (375)
                      .+|+..|.. .|++..||.+|...  ...-.+.+.+.++|+|++.    ++..|+ ++..++++..|+++|++.+-.+..
T Consensus       470 teNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQ-ILR~~NCLq~LLQ~LKS~SLTiVS  548 (2195)
T KOG2122|consen  470 TENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQ-ILRRHNCLQTLLQHLKSHSLTIVS  548 (2195)
T ss_pred             cccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHH-HHHHhhHHHHHHHHhhhcceEEee
Confidence            689999987 69999999999865  2234678999999999875    344454 444799999999999999999999


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ++|++||||...+ ++.++.+++.|+|+.|..++++.+..+-+-++.+|.||-.+.+.
T Consensus       549 NaCGTLWNLSAR~-p~DQq~LwD~gAv~mLrnLIhSKhkMIa~GSaaALrNLln~RPA  605 (2195)
T KOG2122|consen  549 NACGTLWNLSARS-PEDQQMLWDDGAVPMLRNLIHSKHKMIAMGSAAALRNLLNFRPA  605 (2195)
T ss_pred             cchhhhhhhhcCC-HHHHHHHHhcccHHHHHHHHhhhhhhhhhhHHHHHHHHhcCCch
Confidence            9999999999988 57799999999999999999999999999999999999888753

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.84  E-value=1.1e-18  Score=151.89  Aligned_cols=291  Identities=14%  Similarity=0.129  Sum_probs=246.4

Q ss_pred             hHHHHHhhHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHH
Q 017249           16 EEAWNQRKQALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLAL   92 (375)
Q Consensus        16 ~~~~~~~~~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L   92 (375)
                      ...+.+.+..++.-++.+|.  .++.++...-+..+..-|... +.+|..+.+.++++.+.+.|... ..++.....+++
T Consensus       136 ~~qpdl~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~h-E~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~  214 (461)
T KOG4199|consen  136 HKQPDLFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIMH-EVNRQLFMELKILELILQVLNREGKTRTVRELYDAI  214 (461)
T ss_pred             cCCcchhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHHh-HHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHH
Confidence            34456777788888898886  667788888899999999988 89999999999999999777554 446889999999


Q ss_pred             HHhhccCh---------hhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc
Q 017249           93 LNLAVRNE---------RNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS  162 (375)
Q Consensus        93 ~~L~~~~~---------~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~  162 (375)
                      +.|..++.         ..-..|.+.|++..|++.+.-. +|.+......+|..|+..++....+.+.|++..|++++.+
T Consensus       215 r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d  294 (461)
T KOG4199|consen  215 RALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPDSLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDD  294 (461)
T ss_pred             HHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCccHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence            99987532         1335677888999999999876 7889999999999999999999999999999999999987


Q ss_pred             CC----HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCc
Q 017249          163 GS----VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGG  237 (375)
Q Consensus       163 ~~----~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~  237 (375)
                      .+    .+....++.+|..|+.+++++..|++.|+.+.++.++.....++.+.+.++.+++-||- .|++...++ +.|+
T Consensus       295 ~n~~~~r~l~k~~lslLralAG~DsvKs~IV~~gg~~~ii~l~~~h~~~p~Vi~~~~a~i~~l~LR~pdhsa~~i-e~G~  373 (461)
T KOG4199|consen  295 SNEQGNRTLAKTCLSLLRALAGSDSVKSTIVEKGGLDKIITLALRHSDDPLVIQEVMAIISILCLRSPDHSAKAI-EAGA  373 (461)
T ss_pred             hchhhHHHHHHHHHHHHHHHhCCCchHHHHHHhcChHHHHHHHHHcCCChHHHHHHHHHHHHHHhcCcchHHHHH-hcch
Confidence            43    34567889999999999999999999999999999998877788899999999999985 788888888 7899


Q ss_pred             HHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          238 ILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       238 v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      -...++.++..  ...++.+||+.++|++..+ .+++..+ =..+++.|+......++.+...|..+|+-|.++.
T Consensus       374 a~~avqAmkahP~~a~vQrnac~~IRNiv~rs-~~~~~~~-l~~GiE~Li~~A~~~h~tce~~akaALRDLGc~v  446 (461)
T KOG4199|consen  374 ADLAVQAMKAHPVAAQVQRNACNMIRNIVVRS-AENRTIL-LANGIEKLIRTAKANHETCEAAAKAALRDLGCDV  446 (461)
T ss_pred             HHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhh-hhccchH-HhccHHHHHHHHHhcCccHHHHHHHHHHhcCcch
Confidence            99999998753  3678999999999999987 3545544 4566888988888888999999999999998876

>KOG4199 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=2.1e-17  Score=144.00  Aligned_cols=315  Identities=16%  Similarity=0.187  Sum_probs=247.9

Q ss_pred             HhHHHHHHHHh---cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhcc
Q 017249           24 QALIEELSDKL---INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        24 ~~~l~~Lv~~L---~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~   98 (375)
                      .+..+.++..+   .+++.....+++.+|..+.... |.    +.+..+...++.+|.  .++.++....+..+..-|..
T Consensus       103 ~ga~~~~it~~~la~~~~~~~l~ksL~al~~lt~~q-pd----l~da~g~~vvv~lL~~~~~~~dlt~~~~~~v~~Ac~~  177 (461)
T KOG4199|consen  103 NGAHDALITLLELAESPNESVLKKSLEAINSLTHKQ-PD----LFDAEAMAVVLKLLALKVESEEVTLLTLQWLQKACIM  177 (461)
T ss_pred             CCCcchhhhHHHHhhCCchhHHHHHHHHHHHhhcCC-cc----hhccccHHHHHHHHhcccchHHHHHHHHHHHHHHHHH
Confidence            33444444433   3678888889999998888777 43    455778888999885  45678889999999999988


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCCh----------hHHHhcCChHHHHHHhccC-CHH
Q 017249           99 NERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNK----------PAIAASGAAPLLVQILHSG-SVQ  166 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~----------~~i~~~~~l~~L~~lL~~~-~~~  166 (375)
                      ++.+|+.+.+.++.+.+.+.|... ...+.....++++.|..+++.+          ..|...|++..|++.++.+ ++.
T Consensus       178 hE~nrQ~~m~~~il~Li~~~l~~~gk~~~VRel~~a~r~l~~dDDiRV~fg~ah~hAr~ia~e~~l~~L~Eal~A~~dp~  257 (461)
T KOG4199|consen  178 HEVNRQLFMELKILELILQVLNREGKTRTVRELYDAIRALLTDDDIRVVFGQAHGHARTIAKEGILTALTEALQAGIDPD  257 (461)
T ss_pred             hHHHHHHHHHhhHHHHHHHHHcccCccHHHHHHHHHHHHhcCCCceeeecchhhHHHHHHHHhhhHHHHHHHHHccCCcc
Confidence            999999999999999999877654 4567778899999999887754          3456678899999999876 688


Q ss_pred             HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHH
Q 017249          167 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS--KFAEKATALLEILSSSEEGRIAITNSDGGILTLVET  244 (375)
Q Consensus       167 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~l  244 (375)
                      +...++.+|..|+..++.+..+.+.|++..|++++.+++...  .+...++..|+.|+.+.+++..++ +.|+.+.++.+
T Consensus       258 ~L~~l~~tl~~lAVr~E~C~~I~e~GGl~tl~~~i~d~n~~~~r~l~k~~lslLralAG~DsvKs~IV-~~gg~~~ii~l  336 (461)
T KOG4199|consen  258 SLVSLSTTLKALAVRDEICKSIAESGGLDTLLRCIDDSNEQGNRTLAKTCLSLLRALAGSDSVKSTIV-EKGGLDKIITL  336 (461)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHhhhchhhHHHHHHHHHHHHHHHhCCCchHHHHH-HhcChHHHHHH
Confidence            899999999999999999999999999999999999865432  245678899999999999999999 68999999988


Q ss_pred             hc--cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhhcCChh--hhhhhh
Q 017249          245 VE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSS  318 (375)
Q Consensus       245 L~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~g  318 (375)
                      +.  ..+|.+.+.++.++.-+|-.. |+....+++.|+-...++.++..  ...+|++|+++++|+.-++++  +..-.-
T Consensus       337 ~~~h~~~p~Vi~~~~a~i~~l~LR~-pdhsa~~ie~G~a~~avqAmkahP~~a~vQrnac~~IRNiv~rs~~~~~~~l~~  415 (461)
T KOG4199|consen  337 ALRHSDDPLVIQEVMAIISILCLRS-PDHSAKAIEAGAADLAVQAMKAHPVAAQVQRNACNMIRNIVVRSAENRTILLAN  415 (461)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHhcC-cchHHHHHhcchHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhhhccchHHhc
Confidence            74  467889999999999999987 57788889999999889987743  478999999999999877744  333333


Q ss_pred             hHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          319 VLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       319 ~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      +++.|+..-. ...  +.-..-|+.+|+.|
T Consensus       416 GiE~Li~~A~-~~h--~tce~~akaALRDL  442 (461)
T KOG4199|consen  416 GIEKLIRTAK-ANH--ETCEAAAKAALRDL  442 (461)
T ss_pred             cHHHHHHHHH-hcC--ccHHHHHHHHHHhc
Confidence            4555654321 122  33344555566655

>KOG1048 consensus Neural adherens junction protein Plakophilin and related Armadillo repeat proteins [Signal transduction mechanisms; Extracellular structures]

Probab=99.74  E-value=2.8e-16  Score=151.51  Aligned_cols=327  Identities=20%  Similarity=0.180  Sum_probs=248.9

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh--hHHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 017249           14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK--TRSEFAAAGVVQPLVLMLVS-PNLDAIESSLL   90 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~--~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~   90 (375)
                      +.+.+..+...++|+.||.+|.+.+.+++..|+.+|.||..+. ..  ++-.+.+.++|+.++++|+. .|.++++....
T Consensus       264 d~~ik~~vrqlggI~kLv~Ll~~~~~evq~~acgaLRNLvf~~-~~~~NKlai~~~~Gv~~l~~~Lr~t~D~ev~e~iTg  342 (717)
T KOG1048|consen  264 DNKIKSRVRQLGGIPKLVALLDHRNDEVQRQACGALRNLVFGK-STDSNKLAIKELNGVPTLVRLLRHTQDDEVRELITG  342 (717)
T ss_pred             hHHHHHHHHHhccHHHHHHHhcCCcHHHHHHHHHHHHhhhccc-CCcccchhhhhcCChHHHHHHHHhhcchHHHHHHHH
Confidence            4456668889999999999999999999999999999999988 44  78888999999999999986 78999999999


Q ss_pred             HHHHhhccChhhHHHHHHcCChHHHHHhhcC--------C------ChHHHHHHHHHHHHhhcc-CCChhHHH-hcCChH
Q 017249           91 ALLNLAVRNERNKVKIATAGAIPPLVELLKF--------Q------NGTLRELAAAAILTLSAA-APNKPAIA-ASGAAP  154 (375)
Q Consensus        91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~--------~------~~~~~~~a~~~L~~Ls~~-~~~~~~i~-~~~~l~  154 (375)
                      +|+||+. ++..+..++.. .++.|..-+-.        +      ..++-.++..||.|++.. .+.+..+. ..|.|+
T Consensus       343 ~LWNLSS-~D~lK~~ii~~-al~tLt~~vI~P~Sgw~~~~~~~~~~~~~vf~n~tgcLRNlSs~~~eaR~~mr~c~GLId  420 (717)
T KOG1048|consen  343 ILWNLSS-NDALKMLIITS-ALSTLTDNVIIPHSGWEEEPAPRKAEDSTVFRNVTGCLRNLSSAGQEAREQMRECDGLID  420 (717)
T ss_pred             HHhcccc-hhHHHHHHHHH-HHHHHHHhhcccccccCCCCcccccccceeeehhhhhhccccchhHHHHHHHhhccchHH
Confidence            9999998 45556555543 34444443311        1      245667999999999884 55788887 468999


Q ss_pred             HHHHHhcc------CCHHHHHHHHHHHHHhccCCC--C------------------------------chh---------
Q 017249          155 LLVQILHS------GSVQGRVDAVTALHYLSTCKE--N------------------------------SSP---------  187 (375)
Q Consensus       155 ~L~~lL~~------~~~~~~~~a~~~L~~L~~~~~--~------------------------------~~~---------  187 (375)
                      .|+..+++      .+...++++...|.||+..-+  .                              +..         
T Consensus       421 aL~~~iq~~i~~~~~d~K~VENcvCilRNLSYrl~~Evp~~~~~~~~~~~~~~~~~~~~~~~gcf~~k~~k~~~~~~~~~  500 (717)
T KOG1048|consen  421 ALLFSIQTAIQKSDLDSKSVENCVCILRNLSYRLEAEVPPKYRQVLANIARLPGVGPPAESVGCFGFKKRKSDDNCDDLP  500 (717)
T ss_pred             HHHHHHHHHHHhccccchhHHHHHHHHhhcCchhhhhcCHhhhhHhhcccccccCCCcccccccccchhhhchhcccccC
Confidence            99998863      356778999999999974311  0                              000         


Q ss_pred             -------------hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-----hhhhHHHhhccCcHHHHHHHhccCC
Q 017249          188 -------------ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-----EEGRIAITNSDGGILTLVETVEDGS  249 (375)
Q Consensus       188 -------------i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~~~~~g~v~~Lv~lL~~~~  249 (375)
                                   +....++..-..++..+. ...+.+++.++|.||+..     ...+..++....+.+.|+.+|+.++
T Consensus       501 ~pe~~~~pkG~e~Lw~p~vVr~Yl~Ll~~s~-n~~TlEasaGaLQNltA~~~~~~~~~~~~v~~kekgl~~l~~ll~~~~  579 (717)
T KOG1048|consen  501 IPERATAPKGSEWLWHPSVVRPYLLLLALSK-NDNTLEASAGALQNLTAGLWTWSEYMRGAVFRKEKGLPPLVELLRNDD  579 (717)
T ss_pred             CcccccCCCCceeeecHHHHHHHHHHHHHhc-chHHHHHhhhhHhhhhccCCcchhHHHhhhhhhccCccHHHHHHhcCC
Confidence                         111123344344555333 456789999999999864     3345555456789999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC------HHHHHHHHHHHHHhhcCChh---hhhhhhhH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVL  320 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~g~~  320 (375)
                      +.+...++.+|.||+.+.  ..++. +..++++.|++.+.+..      .++--.++.+|.++...+..   .+++.+.+
T Consensus       580 ~~vv~s~a~~LrNls~d~--rnk~l-igk~a~~~lv~~Lp~~~~~~~~sedtv~~vc~tl~niv~~~~~nAkdl~~~~g~  656 (717)
T KOG1048|consen  580 SDVVRSAAGALRNLSRDI--RNKEL-IGKYAIPDLVRCLPGSGPSTSLSEDTVRAVCHTLNNIVRKNVLNAKDLLEIKGI  656 (717)
T ss_pred             chHHHHHHHHHhhhccCc--hhhhh-hhcchHHHHHHhCcCCCCCcCchHHHHHHHHHhHHHHHHHhHHHHHHHHhccCh
Confidence            999999999999999886  44554 45889999999998543      56777788899999876633   68889999


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          321 EKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      +.|+....  ..-+++..+.|..+|..|-
T Consensus       657 ~kL~~I~~--s~~S~k~~kaAs~vL~~lW  683 (717)
T KOG1048|consen  657 PKLRLISK--SQHSPKEFKAASSVLDVLW  683 (717)
T ss_pred             HHHHHHhc--ccCCHHHHHHHHHHHHHHH
Confidence            99986544  3556899999999998883

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.71  E-value=1.7e-15  Score=132.71  Aligned_cols=195  Identities=19%  Similarity=0.219  Sum_probs=169.6

Q ss_pred             hhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           22 RKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      -+.+.+++|+..|+ +.||..+..++.++.+.+..+  .+++.+.+.|+++.+..+|.++++.+++.|+++|.|++. +.
T Consensus         9 l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~--~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~-~~   85 (254)
T PF04826_consen    9 LEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFP--FNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSV-ND   85 (254)
T ss_pred             cCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccCh--hHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCC-Ch
Confidence            45677899999998 679999999999999998877  999999999999999999999999999999999999998 57


Q ss_pred             hhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          101 RNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      +++..+-.  .++.+++...+.  +.+++..++.+|.||+..++.+..+.  +.++.++.+|.+++..++..++.+|.||
T Consensus        86 en~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~--~~i~~ll~LL~~G~~~~k~~vLk~L~nL  161 (254)
T PF04826_consen   86 ENQEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA--NYIPDLLSLLSSGSEKTKVQVLKVLVNL  161 (254)
T ss_pred             hhHHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH--hhHHHHHHHHHcCChHHHHHHHHHHHHh
Confidence            78777644  477777755443  77899999999999998887777764  4799999999999999999999999999


Q ss_pred             ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      +.++.....++..+++..++.++..+.. ..+...++.++.|+..+
T Consensus       162 S~np~~~~~Ll~~q~~~~~~~Lf~~~~~-~~~l~~~l~~~~ni~~~  206 (254)
T PF04826_consen  162 SENPDMTRELLSAQVLSSFLSLFNSSES-KENLLRVLTFFENINEN  206 (254)
T ss_pred             ccCHHHHHHHHhccchhHHHHHHccCCc-cHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999988653 34566688888899754

>KOG2122 consensus Beta-catenin-binding protein APC, contains ARM repeats [Signal transduction mechanisms; Cytoskeleton]

Probab=99.70  E-value=1.4e-15  Score=152.82  Aligned_cols=335  Identities=19%  Similarity=0.197  Sum_probs=255.0

Q ss_pred             chhhhHHHHHhhHhHHHHHHHHhcC---CCHHHHHHHHHHHHHHHhhCChhhHHH--HHhcCChHHHH-------HhhCC
Q 017249           12 TDQEEEAWNQRKQALIEELSDKLIN---GDLETKIEAARDIRKVVKKSSLKTRSE--FAAAGVVQPLV-------LMLVS   79 (375)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~Lv~~L~s---~~~~~~~~a~~~l~~l~~~~~~~~~~~--~~~~g~v~~Lv-------~~L~~   79 (375)
                      +-..+.+..++..+-++.|+..|.-   ++.+.+..|-.+|.|+....+++.+.+  +.-..+++.++       .+|..
T Consensus       222 Sss~esCaamR~SgCLpLLvQilH~~d~~~kear~~A~aALHNIVhSqPD~kr~RRE~kvL~lLeQIraYC~~~~~~lqa  301 (2195)
T KOG2122|consen  222 SSSPESCAAMRRSGCLPLLVQILHGPDDEDKEARKRASAALHNIVHSQPDEKRGRREKKVLHLLEQIRAYCETCWTWLQA  301 (2195)
T ss_pred             ccCchhhHHHHhccchHHHHHHhhCCchhhHHHHHHHHHHHHHHhhcCcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4456778889999999999999983   356788899999999998884444332  11122333222       22322


Q ss_pred             C-------CHHHHH-HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC---------C---ChHHHHHHHHHHHHhhc
Q 017249           80 P-------NLDAIE-SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF---------Q---NGTLRELAAAAILTLSA  139 (375)
Q Consensus        80 ~-------~~~~~~-~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~---------~---~~~~~~~a~~~L~~Ls~  139 (375)
                      .       ..+-+. .|+.+|..++. ++++|..|.+.|++.++-.++.-         +   .-.+|.++..+|.||..
T Consensus       302 r~~~~apa~~~H~lcaA~~~lMK~SF-DEEhR~aM~ELG~LqAIaeLl~vDh~mhgp~tnd~~~~aLRrYa~MALTNLTF  380 (2195)
T KOG2122|consen  302 RGPAIAPASDEHQLCAALCTLMKLSF-DEEHRHAMNELGGLQAIAELLQVDHEMHGPETNDGECNALRRYAGMALTNLTF  380 (2195)
T ss_pred             cCCCCCCcccchhhHHHHHHHHHhhc-cHHHHHHHHHhhhHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHhhcccc
Confidence            1       112233 78889999998 68999999999999999887731         1   24679999999999998


Q ss_pred             cCC-ChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhh-hcCCcHHHHHHhhhcccchHHHHHHH
Q 017249          140 AAP-NKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPIL-DATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       140 ~~~-~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                      .+. ||..+ ...|++..++..|.+...++..-.+.+|.||+.. +.+...++ +.|.+..|+....... .+......+
T Consensus       381 GDv~NKa~LCs~rgfMeavVAQL~s~peeL~QV~AsvLRNLSWRAD~nmKkvLrE~GsVtaLa~~al~~~-kEsTLKavL  459 (2195)
T KOG2122|consen  381 GDVANKATLCSQRGFMEAVVAQLISAPEELLQVYASVLRNLSWRADSNMKKVLRETGSVTALAACALRNK-KESTLKAVL  459 (2195)
T ss_pred             ccccchhhhhhhhhHHHHHHHHHhcChHHHHHHHHHHHHhccccccccHHHHHHhhhhHHHHHHHHHHhc-ccchHHHHH
Confidence            876 56555 4679999999999999889988899999999965 55655554 5788888887665543 224557789


Q ss_pred             HHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccC----ChHHHHHHHHHHHHhcccC--cHHHHHHHHHcCChHHHHHHh
Q 017249          216 ALLEILSS-SEEGRIAITNSDGGILTLVETVEDG----SLVSTQHAVGALLSLCQSC--RDKYRQLILKEGAIPGLLRLT  288 (375)
Q Consensus       216 ~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~~~~a~~~L~~l~~~~--~~~~~~~l~~~g~v~~L~~ll  288 (375)
                      .+||||+. +.+|+..|..-.|++..|+.+|...    .-.+.+.|-++|.|++..-  .+.+++.+.+.+.+..|++.|
T Consensus       460 SALWNLSAHcteNKA~iCaVDGALaFLVg~LSY~~qs~tLaIIEsaGGILRNVSS~IAt~E~yRQILR~~NCLq~LLQ~L  539 (2195)
T KOG2122|consen  460 SALWNLSAHCTENKAEICAVDGALAFLVGTLSYEGQSNTLAIIESAGGILRNVSSLIATCEDYRQILRRHNCLQTLLQHL  539 (2195)
T ss_pred             HHHhhhhhcccccchhhhcccchHHHHHhhccccCCcchhhhhhcCccHHHHHHhHhhccchHHHHHHHhhHHHHHHHHh
Confidence            99999997 5888888888889999999999643    3567888999999886642  146788899999999999999


Q ss_pred             hhCCHHHHHHHHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          289 VEGTFEAQERARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       289 ~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ++.+-.+.-+++.+|+||+-..+   +.+...|+++.|..++.+   ...-..+.+.++|+||+.+
T Consensus       540 KS~SLTiVSNaCGTLWNLSAR~p~DQq~LwD~gAv~mLrnLIhS---KhkMIa~GSaaALrNLln~  602 (2195)
T KOG2122|consen  540 KSHSLTIVSNACGTLWNLSARSPEDQQMLWDDGAVPMLRNLIHS---KHKMIAMGSAAALRNLLNF  602 (2195)
T ss_pred             hhcceEEeecchhhhhhhhcCCHHHHHHHHhcccHHHHHHHHhh---hhhhhhhhHHHHHHHHhcC
Confidence            99999999999999999986653   357789999988777752   3355566777778887644

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.68  E-value=4.1e-14  Score=127.41  Aligned_cols=308  Identities=15%  Similarity=0.114  Sum_probs=237.0

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----C---CHHHHHHHHHHHHH
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----P---NLDAIESSLLALLN   94 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~---~~~~~~~a~~~L~~   94 (375)
                      .+.+++..|.....|++.++-.+..++|.|+|.++ .++|..+.+.||-..++..|+.    +   +.+...-+...|.|
T Consensus        84 I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn-~E~R~a~~~lgGaqivid~L~~~cs~d~~ane~~~~v~~g~l~N  162 (604)
T KOG4500|consen   84 IDAEALELLRQTPSSPDTEVHEQCFRALGNICYDN-NENRAAFFNLGGAQIVIDVLKPYCSKDNPANEEYSAVAFGVLHN  162 (604)
T ss_pred             hHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccC-chhHHHHHhcCCceehHhhhccccccCCccHHHHHHHHHHHHHH
Confidence            34567777777778889999999999999999999 9999999999997777666643    2   24677788889999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhcc-CCC-hhHHHhcCChHHHHHHhccC-CHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAA-APN-KPAIAASGAAPLLVQILHSG-SVQGRV  169 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~-~~~-~~~i~~~~~l~~L~~lL~~~-~~~~~~  169 (375)
                      ..-++...+.++.+.|+++.|...+.-+  +....+.......||..- .++ .+...+....-.+++++.+. ++...+
T Consensus       163 y~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~~e~~~~~~~d~sl~~~l~~ll~~~v~~d~~e  242 (604)
T KOG4500|consen  163 YILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFVCEMLYPFCKDCSLVFMLLQLLPSMVREDIDE  242 (604)
T ss_pred             hhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHHHHhhhhhhccchHHHHHHHHHHHhhccchhh
Confidence            9999999999999999999999987543  666666666666665432 232 33444556666777777655 566777


Q ss_pred             HHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch------HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH
Q 017249          170 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS------KFAEKATALLEILSSSEEGRIAITNSDGGILTLVE  243 (375)
Q Consensus       170 ~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~------~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~  243 (375)
                      -....|...+.++..+..+.+.|.+..++++++......      .....++....-+....+.-..+......++.++.
T Consensus       243 M~feila~~aend~Vkl~la~~gl~e~~~~lv~~~k~~t~k~d~~~l~k~~~el~vllltGDeSMq~L~~~p~~l~~~~s  322 (604)
T KOG4500|consen  243 MIFEILAKAAENDLVKLSLAQNGLLEDSIDLVRNMKDFTKKTDMLNLFKRIAELDVLLLTGDESMQKLHADPQFLDFLES  322 (604)
T ss_pred             HHHHHHHHHhcCcceeeehhhcchHHHHHHHHHhcccccchHHHHHHHHhhhhHhhhhhcCchHHHHHhcCcHHHHHHHH
Confidence            888899999999999999999999999999998732111      12223334344444445555555533347889999


Q ss_pred             HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-----hCCHHHHHHHHHHHHHhhcCChh--hhhh
Q 017249          244 TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-----EGTFEAQERARTLLDLLRDTPQE--KRLS  316 (375)
Q Consensus       244 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-----~~~~~~~~~A~~~L~~l~~~~~~--~~~~  316 (375)
                      .+.+.+......+.-+|+|++..+  ..+..+++.|.+..|++++.     +++-+.|..+..+|+|+.-..++  .+..
T Consensus       323 w~~S~d~~l~t~g~LaigNfaR~D--~~ci~~v~~~~~nkL~~~l~~~~~vdgnV~~qhA~lsALRnl~IPv~nka~~~~  400 (604)
T KOG4500|consen  323 WFRSDDSNLITMGSLAIGNFARRD--DICIQLVQKDFLNKLISCLMQEKDVDGNVERQHACLSALRNLMIPVSNKAHFAP  400 (604)
T ss_pred             HhcCCchhHHHHHHHHHHhhhccc--hHHHHHHHHHHHHHHHHHHHHhcCCCccchhHHHHHHHHHhccccCCchhhccc
Confidence            999989889999999999999987  56888999999999999775     36788889999999999876644  6889


Q ss_pred             hhhHHHHHHHHhhcCC
Q 017249          317 SSVLEKIVYDIAARVD  332 (375)
Q Consensus       317 ~g~~~~l~~~l~~~~~  332 (375)
                      .|+.++++..+..+..
T Consensus       401 aGvteaIL~~lk~~~p  416 (604)
T KOG4500|consen  401 AGVTEAILLQLKLASP  416 (604)
T ss_pred             cchHHHHHHHHHhcCC
Confidence            9999999988875543

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.67  E-value=1.4e-13  Score=133.80  Aligned_cols=320  Identities=17%  Similarity=0.189  Sum_probs=247.3

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ..+..+.|...|.++++.++..+++.|.++..++ +.....+.+.+.++.++.+|.+++..+...|+.+|.+++. .+..
T Consensus        75 ~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~-~~~~~~~~~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~-~~~~  152 (503)
T PF10508_consen   75 LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHS-EGAAQLLVDNELLPLIIQCLRDPDLSVAKAAIKALKKLAS-HPEG  152 (503)
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCC-HHHHHHhcCccHHHHHHHHHcCCcHHHHHHHHHHHHHHhC-Cchh
Confidence            4566778888888999999999999999999888 6667777788999999999999999999999999999998 4556


Q ss_pred             HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      ...++..+.++.|..++...++.+|..+..++.+++...+ ....+...|.++.++..+++.|.-++.+++.+|..|+..
T Consensus       153 ~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~~~~~sgll~~ll~eL~~dDiLvqlnalell~~La~~  232 (503)
T PF10508_consen  153 LEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAEAVVNSGLLDLLLKELDSDDILVQLNALELLSELAET  232 (503)
T ss_pred             HHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHHHHHhccHHHHHHHHhcCccHHHHHHHHHHHHHHHcC
Confidence            6678888889999999988888999999999999987654 566667889999999999998899999999999999998


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccch---H-HHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYS---K-FAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHA  256 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~---~-~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a  256 (375)
                      +.+...+.+.|+++.|.+++.+...++   . +.-......++++.. +......  ...++..|..++.+.++..+..|
T Consensus       233 ~~g~~yL~~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~g~la~~~~~~v~~~--~p~~~~~l~~~~~s~d~~~~~~A  310 (503)
T PF10508_consen  233 PHGLQYLEQQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFFGNLARVSPQEVLEL--YPAFLERLFSMLESQDPTIREVA  310 (503)
T ss_pred             hhHHHHHHhCCHHHHHHHHHhccccCCcccchhhhhHHHHHHHHHhcChHHHHHH--HHHHHHHHHHHhCCCChhHHHHH
Confidence            888999999999999999998764443   1 222234566777764 3322222  24566777888888999999999


Q ss_pred             HHHHHHhcccCcHHHHHHH-HHc-CChHHHHH----HhhhCCHHHHHHHHHHHHHhhcCChh----hh----------hh
Q 017249          257 VGALLSLCQSCRDKYRQLI-LKE-GAIPGLLR----LTVEGTFEAQERARTLLDLLRDTPQE----KR----------LS  316 (375)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~l-~~~-g~v~~L~~----ll~~~~~~~~~~A~~~L~~l~~~~~~----~~----------~~  316 (375)
                      +.+++.++...  +++..+ ... +.++.++.    ...++..++|..+..+|.++-...+.    .+          ..
T Consensus       311 ~dtlg~igst~--~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~~lk~r~l~al~~il~~~~~~~~~~i~~~~~~w~~~~~  388 (503)
T PF10508_consen  311 FDTLGQIGSTV--EGKQLLLQKQGPAMKHVLKAIGDAIKSGSTELKLRALHALASILTSGTDRQDNDILSITESWYESLS  388 (503)
T ss_pred             HHHHHHHhCCH--HHHHHHHhhcchHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHhc
Confidence            99999999764  667777 443 35555544    44467789999999999999433311    11          11


Q ss_pred             hhhHH-HHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          317 SSVLE-KIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       317 ~g~~~-~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      .+-.. -++..+   ...-++.+-.+-++|+.+..+
T Consensus       389 ~~~~~~~l~~~~---~qPF~elr~a~~~~l~~l~~~  421 (503)
T PF10508_consen  389 GSPLSNLLMSLL---KQPFPELRCAAYRLLQALAAQ  421 (503)
T ss_pred             CCchHHHHHHHh---cCCchHHHHHHHHHHHHHhcC
Confidence            11222 233323   455688888888888887654

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>PF10508 Proteasom_PSMB: Proteasome non-ATPase 26S subunit; InterPro: IPR019538 The 26S proteasome is an enzymatic complex that degrades ubiquitinated proteins in eukaryotic cells

Probab=99.66  E-value=1.9e-13  Score=132.79  Aligned_cols=317  Identities=14%  Similarity=0.107  Sum_probs=247.7

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249           28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA  107 (375)
Q Consensus        28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~  107 (375)
                      +.++..|++.+.+....++.+|..+....  .....  ..+..+.|...|.++++.++..+++.|.++..++......+.
T Consensus        41 ~~lf~~L~~~~~e~v~~~~~iL~~~l~~~--~~~~l--~~~~~~~L~~gL~h~~~~Vr~l~l~~l~~~~~~~~~~~~~~~  116 (503)
T PF10508_consen   41 PVLFDCLNTSNREQVELICDILKRLLSAL--SPDSL--LPQYQPFLQRGLTHPSPKVRRLALKQLGRIARHSEGAAQLLV  116 (503)
T ss_pred             HHHHHHHhhcChHHHHHHHHHHHHHHhcc--CHHHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCHHHHHHhc
Confidence            34778888888888888889999988766  33332  456788999999999999999999999999987776677777


Q ss_pred             HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCch
Q 017249          108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSS  186 (375)
Q Consensus       108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~  186 (375)
                      +.+.++.++.++.+++..+...|+.+|.+++.++.....+...+.++.|..++..++..++..+..++.+++.. ++...
T Consensus       117 ~~~l~~~i~~~L~~~d~~Va~~A~~~L~~l~~~~~~~~~l~~~~~~~~L~~l~~~~~~~vR~Rv~el~v~i~~~S~~~~~  196 (503)
T PF10508_consen  117 DNELLPLIIQCLRDPDLSVAKAAIKALKKLASHPEGLEQLFDSNLLSKLKSLMSQSSDIVRCRVYELLVEIASHSPEAAE  196 (503)
T ss_pred             CccHHHHHHHHHcCCcHHHHHHHHHHHHHHhCCchhHHHHhCcchHHHHHHHHhccCHHHHHHHHHHHHHHHhcCHHHHH
Confidence            89999999999999999999999999999999887777777888899999999988888899999999999865 45666


Q ss_pred             hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC--h----HHHHHHHHHH
Q 017249          187 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS--L----VSTQHAVGAL  260 (375)
Q Consensus       187 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~----~~~~~a~~~L  260 (375)
                      .+.+.|.++.+++.+.++  +.-++.+++.+|..|+..+.+...+. ..|+++.|..++.+.+  +    ..--..+...
T Consensus       197 ~~~~sgll~~ll~eL~~d--DiLvqlnalell~~La~~~~g~~yL~-~~gi~~~L~~~l~~~~~dp~~~~~~l~g~~~f~  273 (503)
T PF10508_consen  197 AVVNSGLLDLLLKELDSD--DILVQLNALELLSELAETPHGLQYLE-QQGIFDKLSNLLQDSEEDPRLSSLLLPGRMKFF  273 (503)
T ss_pred             HHHhccHHHHHHHHhcCc--cHHHHHHHHHHHHHHHcChhHHHHHH-hCCHHHHHHHHHhccccCCcccchhhhhHHHHH
Confidence            777789999999999884  55788999999999999999999998 5899999999996432  2    1222334556


Q ss_pred             HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhh--h-hhhHHHHHHHHhhc-CCChH
Q 017249          261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRL--S-SSVLEKIVYDIAAR-VDGAD  335 (375)
Q Consensus       261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~--~-~g~~~~l~~~l~~~-~~g~~  335 (375)
                      ++++...+.....  .-..++..|.+++.+.|+..+..|..++..++..... ..+  . .+.++..+...... ..|+.
T Consensus       274 g~la~~~~~~v~~--~~p~~~~~l~~~~~s~d~~~~~~A~dtlg~igst~~G~~~L~~~~~~~~~~~l~~~~~~~~~~~~  351 (503)
T PF10508_consen  274 GNLARVSPQEVLE--LYPAFLERLFSMLESQDPTIREVAFDTLGQIGSTVEGKQLLLQKQGPAMKHVLKAIGDAIKSGST  351 (503)
T ss_pred             HHHHhcChHHHHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHHhCCHHHHHHHHhhcchHHHHHHHHHHHHhcCCch
Confidence            6676654222211  1145667777888899999999999999999977754 222  2 22444444443322 45667


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 017249          336 KAAETAKRLLQDMVQRSM  353 (375)
Q Consensus       336 ~~~~~a~~~l~~l~~~s~  353 (375)
                      ..+-++-.++..+.....
T Consensus       352 ~lk~r~l~al~~il~~~~  369 (503)
T PF10508_consen  352 ELKLRALHALASILTSGT  369 (503)
T ss_pred             HHHHHHHHHHHHHHhcCC
Confidence            888899999999964433

26S proteasome non-ATPase regulatory subunit 5 is one of a number of chaperones that are involved in the assembly of the proteasome. The chaperones dissociate before 26S proteasome formation is complete [].; GO: 0044183 protein binding involved in protein folding

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.64  E-value=2.7e-13  Score=123.70  Aligned_cols=307  Identities=14%  Similarity=0.159  Sum_probs=243.1

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHH
Q 017249           13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLAL   92 (375)
Q Consensus        13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L   92 (375)
                      .|......++....+..||+.|..++.+........|.+++...  +++..|.+.|.|..|+++.-.++++++...+..|
T Consensus       292 ed~~~ElKMrrkniV~mLVKaLdr~n~~Ll~lv~~FLkKLSIf~--eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~Ll  369 (791)
T KOG1222|consen  292 EDISVELKMRRKNIVAMLVKALDRSNSSLLTLVIKFLKKLSIFD--ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLL  369 (791)
T ss_pred             hhhhHHHHHHHHhHHHHHHHHHcccchHHHHHHHHHHHHhhhhc--cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHh
Confidence            44555667788899999999999989998889999999999998  8999999999999999999999999999999999


Q ss_pred             HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHH
Q 017249           93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDA  171 (375)
Q Consensus        93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a  171 (375)
                      .|++.+ ...|..++..|.+|.|..++.+..  -+..|+..+..++-+++.+..+.-..+++.+.+.+-++ +.++-...
T Consensus       370 fNlSFD-~glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~S~dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~l  446 (791)
T KOG1222|consen  370 FNLSFD-SGLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHLSCDDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLAL  446 (791)
T ss_pred             hhcccc-ccccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhhccCcHHHHHHHHHHHHHHHHHHHHhcCCceecHHH
Confidence            999994 679999999999999999997653  34568888999999999999999899999999987655 45666666


Q ss_pred             HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh-hHHHhhccCcHHHHHHHhcc-CC
Q 017249          172 VTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-RIAITNSDGGILTLVETVED-GS  249 (375)
Q Consensus       172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~-~~~~~~~~g~v~~Lv~lL~~-~~  249 (375)
                      +....|||.+..|.+.+++-.++..|++..-... +. +   ...+++|++.++.. +..++   ..|..|...+.. .+
T Consensus       447 ia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~-D~-l---LmK~vRniSqHeg~tqn~Fi---dyvgdLa~i~~nd~~  518 (791)
T KOG1222|consen  447 IALCINLCLNKRNAQLVCEGQGLDLLMERAIKSR-DL-L---LMKVVRNISQHEGATQNMFI---DYVGDLAGIAKNDNS  518 (791)
T ss_pred             HHHHHHHHhccccceEEecCcchHHHHHHHhccc-ch-H---HHHHHHHhhhccchHHHHHH---HHHHHHHHHhhcCch
Confidence            6667799998888888888888888887665543 21 2   45788899988764 44444   467778877764 45


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC--CHHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG--TFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVY  325 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~  325 (375)
                      +...-+++++++|+.-.+- +-...+.+...||.+.+.+..+  ..+.+-..+-.+..+++....  .....++++.++.
T Consensus       519 E~F~~EClGtlanL~v~dl-dw~~ilq~~~LvPw~k~~L~pga~eddLvL~~vi~~GT~a~d~~cA~Lla~a~~i~tlie  597 (791)
T KOG1222|consen  519 ESFGLECLGTLANLKVTDL-DWAKILQSENLVPWMKTQLQPGADEDDLVLQIVIACGTMARDLDCARLLAPAKLIDTLIE  597 (791)
T ss_pred             HHHHHHHHHHHhhcccCCC-CHHHHHhhccccHHHHHhhcCCccchhhhhHHHHHhhhhhhhhHHHHHhCccccHHHHHH
Confidence            6677899999999987653 3355566689999999988744  245555666666666665533  3445789999999


Q ss_pred             HHhhcCCC
Q 017249          326 DIAARVDG  333 (375)
Q Consensus       326 ~l~~~~~g  333 (375)
                      +|.+....
T Consensus       598 LL~a~QeD  605 (791)
T KOG1222|consen  598 LLQACQED  605 (791)
T ss_pred             HHHhhccc
Confidence            88765544

>PF04826 Arm_2: Armadillo-like; InterPro: IPR006911 This entry consists of mammalian proteins of unknown function

Probab=99.63  E-value=1.1e-14  Score=127.74  Aligned_cols=198  Identities=20%  Similarity=0.200  Sum_probs=172.6

Q ss_pred             HHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249          106 IATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN  184 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~  184 (375)
                      +.+.+-++.|+.+|+.. +|.+++.+..++.+.+..+.++..+.+.|+++.+..+|.++++.++..|+++|.|++...++
T Consensus         8 ~l~~~~l~~Ll~lL~~t~dp~i~e~al~al~n~aaf~~nq~~Ir~~Ggi~lI~~lL~~p~~~vr~~AL~aL~Nls~~~en   87 (254)
T PF04826_consen    8 ILEAQELQKLLCLLESTEDPFIQEKALIALGNSAAFPFNQDIIRDLGGISLIGSLLNDPNPSVREKALNALNNLSVNDEN   87 (254)
T ss_pred             CcCHHHHHHHHHHHhcCCChHHHHHHHHHHHhhccChhHHHHHHHcCCHHHHHHHcCCCChHHHHHHHHHHHhcCCChhh
Confidence            35667789999999865 89999999999999999999999999999999999999999999999999999999999888


Q ss_pred             chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249          185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  264 (375)
                      ...+-.  .++.+.+...+..-+..++..++++|.||+..++.+..+.   +.++.++++|..++..++..++++|.||+
T Consensus        88 ~~~Ik~--~i~~Vc~~~~s~~lns~~Q~agLrlL~nLtv~~~~~~~l~---~~i~~ll~LL~~G~~~~k~~vLk~L~nLS  162 (254)
T PF04826_consen   88 QEQIKM--YIPQVCEETVSSPLNSEVQLAGLRLLTNLTVTNDYHHMLA---NYIPDLLSLLSSGSEKTKVQVLKVLVNLS  162 (254)
T ss_pred             HHHHHH--HHHHHHHHHhcCCCCCHHHHHHHHHHHccCCCcchhhhHH---hhHHHHHHHHHcCChHHHHHHHHHHHHhc
Confidence            887754  5777777665554455788899999999998888777665   47999999999999999999999999999


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHHhhhC-CHHHHHHHHHHHHHhhcCC
Q 017249          265 QSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~  310 (375)
                      ...  .....++..++++.++.++... +.++-..+..+..++.++-
T Consensus       163 ~np--~~~~~Ll~~q~~~~~~~Lf~~~~~~~~l~~~l~~~~ni~~~~  207 (254)
T PF04826_consen  163 ENP--DMTRELLSAQVLSSFLSLFNSSESKENLLRVLTFFENINENI  207 (254)
T ss_pred             cCH--HHHHHHHhccchhHHHHHHccCCccHHHHHHHHHHHHHHHhh
Confidence            875  6778888999999999999865 6788899999999997665

>PRK09687 putative lyase; Provisional

Probab=99.57  E-value=7.3e-13  Score=118.75  Aligned_cols=265  Identities=18%  Similarity=0.083  Sum_probs=201.3

Q ss_pred             hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249           16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL   95 (375)
Q Consensus        16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L   95 (375)
                      -.....++.-.++.|+..|.+.+..++..|++.|..+-...            +++.+..++.++++.++..++++|+.|
T Consensus        14 ~~~~~~~~~~~~~~L~~~L~d~d~~vR~~A~~aL~~~~~~~------------~~~~l~~ll~~~d~~vR~~A~~aLg~l   81 (280)
T PRK09687         14 YSLYSQCKKLNDDELFRLLDDHNSLKRISSIRVLQLRGGQD------------VFRLAIELCSSKNPIERDIGADILSQL   81 (280)
T ss_pred             HHHHHHHhhccHHHHHHHHhCCCHHHHHHHHHHHHhcCcch------------HHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            33445556667899999999999999999999998764322            467788889999999999999999998


Q ss_pred             hccChhhHHHHHHcCChHHHHHh-hcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249           96 AVRNERNKVKIATAGAIPPLVEL-LKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA  174 (375)
Q Consensus        96 ~~~~~~~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~  174 (375)
                      -... ..     ....++.|..+ ++++++.++..|+.+|.++.......    ....++.+...+.+.+..++..++++
T Consensus        82 g~~~-~~-----~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~~~~VR~~a~~a  151 (280)
T PRK09687         82 GMAK-RC-----QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDKSTNVRFAVAFA  151 (280)
T ss_pred             CCCc-cc-----hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCCCHHHHHHHHHH
Confidence            6522 11     12346777776 67779999999999999985432211    12345667788888999999999999


Q ss_pred             HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249          175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQ  254 (375)
Q Consensus       175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~  254 (375)
                      |..+.          ....++.|+.++.+.  +..++..|..+|+.+...         ....++.|+..|.+.+..++.
T Consensus       152 Lg~~~----------~~~ai~~L~~~L~d~--~~~VR~~A~~aLg~~~~~---------~~~~~~~L~~~L~D~~~~VR~  210 (280)
T PRK09687        152 LSVIN----------DEAAIPLLINLLKDP--NGDVRNWAAFALNSNKYD---------NPDIREAFVAMLQDKNEEIRI  210 (280)
T ss_pred             HhccC----------CHHHHHHHHHHhcCC--CHHHHHHHHHHHhcCCCC---------CHHHHHHHHHHhcCCChHHHH
Confidence            97552          334788999999876  446888899999887321         235777899999999999999


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      .|++.|..+-.            ..+++.|+..+.+++  ++..|+.+|..+....        +++.|...+.  .+.+
T Consensus       211 ~A~~aLg~~~~------------~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~~--------a~p~L~~l~~--~~~d  266 (280)
T PRK09687        211 EAIIGLALRKD------------KRVLSVLIKELKKGT--VGDLIIEAAGELGDKT--------LLPVLDTLLY--KFDD  266 (280)
T ss_pred             HHHHHHHccCC------------hhHHHHHHHHHcCCc--hHHHHHHHHHhcCCHh--------HHHHHHHHHh--hCCC
Confidence            99999988521            257889999988766  5678888888888754        7888877665  3445


Q ss_pred             HHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQD  347 (375)
Q Consensus       335 ~~~~~~a~~~l~~  347 (375)
                      ++.+.+|.+.|+.
T Consensus       267 ~~v~~~a~~a~~~  279 (280)
T PRK09687        267 NEIITKAIDKLKR  279 (280)
T ss_pred             hhHHHHHHHHHhc
Confidence            7888898888764

>KOG4500 consensus Rho/Rac GTPase guanine nucleotide exchange factor smgGDS/Vimar [Signal transduction mechanisms]

Probab=99.52  E-value=2.7e-12  Score=115.88  Aligned_cols=307  Identities=14%  Similarity=0.111  Sum_probs=231.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhCChhhHHHHH----hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249           37 GDLETKIEAARDIRKVVKKSSLKTRSEFA----AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI  112 (375)
Q Consensus        37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~----~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i  112 (375)
                      .+..+...+..++...+..+  ..|..|.    +.++++.|.+..++++.++.++.+++|+|+|.++.++|..+.+.||-
T Consensus        54 ~~~tv~~~qssC~A~~sk~e--v~r~~F~~~~I~a~~le~Lrq~psS~d~ev~~Q~~RaLgNiCydn~E~R~a~~~lgGa  131 (604)
T KOG4500|consen   54 ASDTVYLFQSSCLADRSKNE--VERSLFRNYCIDAEALELLRQTPSSPDTEVHEQCFRALGNICYDNNENRAAFFNLGGA  131 (604)
T ss_pred             ccchhhhhhHHHHHHHhhhH--HHHHHHHHHhhHHHHHHHHHhCCCCCcccHHHHHHHHHhhhhccCchhHHHHHhcCCc
Confidence            34455666777888887554  6666554    45778888888899999999999999999999999999999999998


Q ss_pred             HHHHHhhcCC-------ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccC-
Q 017249          113 PPLVELLKFQ-------NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHS--GSVQGRVDAVTALHYLSTC-  181 (375)
Q Consensus       113 ~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~--~~~~~~~~a~~~L~~L~~~-  181 (375)
                      ..++.+|+.-       +.+....+...|.|...+.+ -+....+.|+++.|...+.-  .+....+..+....||.+- 
T Consensus       132 qivid~L~~~cs~d~~ane~~~~v~~g~l~Ny~l~~~~l~aq~~~~gVl~tL~~~~~I~~qNaa~~e~ll~~f~nlls~~  211 (604)
T KOG4500|consen  132 QIVIDVLKPYCSKDNPANEEYSAVAFGVLHNYILDSRELRAQVADAGVLNTLAITYWIDWQNAALTEKLLAPFFNLLSFV  211 (604)
T ss_pred             eehHhhhccccccCCccHHHHHHHHHHHHHHhhCCcHHHHHHHHhcccHHHHHHHhhcccccHHHHHHHHhccccHHHHH
Confidence            8888887542       34666777888999877655 57777899999999888754  4666666666666666532 


Q ss_pred             CCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHH------
Q 017249          182 KEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVST------  253 (375)
Q Consensus       182 ~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~------  253 (375)
                      .++ .....+......+++++.+.. .+++.+.+..+|...+.+...+-.+. ..|.+..++.+++. ....-+      
T Consensus       212 ~e~~~~~~~d~sl~~~l~~ll~~~v-~~d~~eM~feila~~aend~Vkl~la-~~gl~e~~~~lv~~~k~~t~k~d~~~l  289 (604)
T KOG4500|consen  212 CEMLYPFCKDCSLVFMLLQLLPSMV-REDIDEMIFEILAKAAENDLVKLSLA-QNGLLEDSIDLVRNMKDFTKKTDMLNL  289 (604)
T ss_pred             HHhhhhhhccchHHHHHHHHHHHhh-ccchhhHHHHHHHHHhcCcceeeehh-hcchHHHHHHHHHhcccccchHHHHHH
Confidence            222 333345667778888887764 34567889999999998888888888 68999999988864 221111      


Q ss_pred             -HHHHHHHHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhh
Q 017249          254 -QHAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAA  329 (375)
Q Consensus       254 -~~a~~~L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~  329 (375)
                       ..++....-+..++  +..+.+...+ ++..++..+.+.|...+..++-++.|+.+....  .+++.|+++.|+..|..
T Consensus       290 ~k~~~el~vllltGD--eSMq~L~~~p~~l~~~~sw~~S~d~~l~t~g~LaigNfaR~D~~ci~~v~~~~~nkL~~~l~~  367 (604)
T KOG4500|consen  290 FKRIAELDVLLLTGD--ESMQKLHADPQFLDFLESWFRSDDSNLITMGSLAIGNFARRDDICIQLVQKDFLNKLISCLMQ  367 (604)
T ss_pred             HHhhhhHhhhhhcCc--hHHHHHhcCcHHHHHHHHHhcCCchhHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHHH
Confidence             23333344444444  4566777755 889999999999999999999999999988755  68899999999988753


Q ss_pred             --cCCChHHHHHHHHHHHHHHH
Q 017249          330 --RVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       330 --~~~g~~~~~~~a~~~l~~l~  349 (375)
                        .++|..+.+..+..+|++|.
T Consensus       368 ~~~vdgnV~~qhA~lsALRnl~  389 (604)
T KOG4500|consen  368 EKDVDGNVERQHACLSALRNLM  389 (604)
T ss_pred             hcCCCccchhHHHHHHHHHhcc
Confidence              46788888899999999984

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.48  E-value=9.4e-13  Score=103.06  Aligned_cols=118  Identities=31%  Similarity=0.387  Sum_probs=108.9

Q ss_pred             HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249           63 EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP  142 (375)
Q Consensus        63 ~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  142 (375)
                      .+++.|+++.|+++|.+++.+++..++++|.+++.++++.+..+.+.|+++.++.+|.++++.++..++++|++++.+.+
T Consensus         2 ~~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           2 AVIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGNNDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             hHHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            36788999999999999999999999999999999889999999999999999999999999999999999999998875


Q ss_pred             -ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          143 -NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       143 -~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                       ....+...|+++.|++++...+..++..++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence             45566788999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>cd00020 ARM Armadillo/beta-catenin-like repeats

Probab=99.48  E-value=1.4e-12  Score=102.03  Aligned_cols=118  Identities=27%  Similarity=0.334  Sum_probs=110.5

Q ss_pred             HhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           21 QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        21 ~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +.+.|.++.++++|.+++++.+..++++|.+++... ++....+.+.|+++.++++|.++++.++..++++|.+++.+.+
T Consensus         3 ~~~~~~i~~l~~~l~~~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~~i~~l~~~l~~~~~~v~~~a~~~L~~l~~~~~   81 (120)
T cd00020           3 VIQAGGLPALVSLLSSSDENVQREAAWALSNLSAGN-NDNIQAVVEAGGLPALVQLLKSEDEEVVKAALWALRNLAAGPE   81 (120)
T ss_pred             HHHcCChHHHHHHHHcCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCChHHHHHHHhCCCHHHHHHHHHHHHHHccCcH
Confidence            567889999999999999999999999999999997 7888999999999999999999999999999999999999877


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA  139 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~  139 (375)
                      ..+..+...|+++.|++++...+..+++.++++|.+|+.
T Consensus        82 ~~~~~~~~~g~l~~l~~~l~~~~~~~~~~a~~~l~~l~~  120 (120)
T cd00020          82 DNKLIVLEAGGVPKLVNLLDSSNEDIQKNATGALSNLAS  120 (120)
T ss_pred             HHHHHHHHCCChHHHHHHHhcCCHHHHHHHHHHHHHhhC
Confidence            888888999999999999999999999999999999863

An approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila segment polarity gene armadillo; these repeats were also found in the mammalian armadillo homolog beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumor suppressor protein, and a number of other proteins. ARM has been implicated in mediating protein-protein interactions, but no common features among the target proteins recognized by the ARM repeats have been identified; related to the HEAT domain; three consecutive copies of the repeat are represented by this alignment model.

>PRK09687 putative lyase; Provisional

Probab=99.44  E-value=3.4e-11  Score=108.02  Aligned_cols=225  Identities=16%  Similarity=0.068  Sum_probs=168.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA  148 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  148 (375)
                      -++.|.+.|.+++..++..++++|..+-.           ..+++.+..++.+.++.+|..++++|..|-..+..     
T Consensus        24 ~~~~L~~~L~d~d~~vR~~A~~aL~~~~~-----------~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~-----   87 (280)
T PRK09687         24 NDDELFRLLDDHNSLKRISSIRVLQLRGG-----------QDVFRLAIELCSSKNPIERDIGADILSQLGMAKRC-----   87 (280)
T ss_pred             cHHHHHHHHhCCCHHHHHHHHHHHHhcCc-----------chHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccc-----
Confidence            58899999999999999999999998753           23567888889999999999999999998543221     


Q ss_pred             hcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249          149 ASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  227 (375)
Q Consensus       149 ~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~  227 (375)
                      ....++.|..+ ++++++.++..|+.+|.+++......    ...++..+...+.+.  +..++..+..+|..+.     
T Consensus        88 ~~~a~~~L~~l~~~D~d~~VR~~A~~aLG~~~~~~~~~----~~~a~~~l~~~~~D~--~~~VR~~a~~aLg~~~-----  156 (280)
T PRK09687         88 QDNVFNILNNLALEDKSACVRASAINATGHRCKKNPLY----SPKIVEQSQITAFDK--STNVRFAVAFALSVIN-----  156 (280)
T ss_pred             hHHHHHHHHHHHhcCCCHHHHHHHHHHHhccccccccc----chHHHHHHHHHhhCC--CHHHHHHHHHHHhccC-----
Confidence            22457778877 67788999999999999986433211    112444565666655  4478888888886542     


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                            ....++.|+.+|.+.++.++..|+.+|..+...+          ..+++.|+.++.+.++.+|..|++.|..+.
T Consensus       157 ------~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~----------~~~~~~L~~~L~D~~~~VR~~A~~aLg~~~  220 (280)
T PRK09687        157 ------DEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDN----------PDIREAFVAMLQDKNEEIRIEAIIGLALRK  220 (280)
T ss_pred             ------CHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCC----------HHHHHHHHHHhcCCChHHHHHHHHHHHccC
Confidence                  3458899999999999999999999999984333          245677899999999999999999999876


Q ss_pred             cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ...        +++.|+..|.   ++.  .+..|..+|..+-
T Consensus       221 ~~~--------av~~Li~~L~---~~~--~~~~a~~ALg~ig  249 (280)
T PRK09687        221 DKR--------VLSVLIKELK---KGT--VGDLIIEAAGELG  249 (280)
T ss_pred             Chh--------HHHHHHHHHc---CCc--hHHHHHHHHHhcC
Confidence            543        7777777664   332  2344555555553

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.43  E-value=3.8e-11  Score=112.14  Aligned_cols=279  Identities=14%  Similarity=0.048  Sum_probs=202.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      +....++.+|..+|.-++..|+.+++.+.... ..........-.+..|...|+++ +.+.+.-++.+|..|.. .+.+|
T Consensus       101 ~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~~~-~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~-~~~~R  178 (429)
T cd00256         101 KTWEPFFNLLNRQDQFIVHMSFSILAKLACFG-LAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLR-VDEYR  178 (429)
T ss_pred             cchHHHHHHHcCCchhHHHHHHHHHHHHHhcC-ccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhC-CchHH
Confidence            45677888998899999999999999998765 22211111111334555666554 46778888999999998 67899


Q ss_pred             HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhcc
Q 017249          104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLST  180 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~  180 (375)
                      ..+.+.++++.|+.+|+..  +..++..++-|+|-|+.+++....+...+.++.|+++++.. ..++.+-++.+|.||..
T Consensus       179 ~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~KEKvvRv~l~~l~Nll~  258 (429)
T cd00256         179 FAFVLADGVPTLVKLLSNATLGFQLQYQSIFCIWLLTFNPHAAEVLKRLSLIQDLSDILKESTKEKVIRIVLAIFRNLIS  258 (429)
T ss_pred             HHHHHccCHHHHHHHHhhccccHHHHHHHHHHHHHHhccHHHHHhhccccHHHHHHHHHHhhhhHHHHHHHHHHHHHHhh
Confidence            9999999999999999764  56889999999999999988666667789999999999876 46789999999999987


Q ss_pred             CC-------CCchhhhhcCCcHHHHHHhhhcccchHHHHHH-------HHHHHHhhCC---------------h------
Q 017249          181 CK-------ENSSPILDATAVPPLINLLKDCKKYSKFAEKA-------TALLEILSSS---------------E------  225 (375)
Q Consensus       181 ~~-------~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a-------~~~L~~l~~~---------------~------  225 (375)
                      .+       .....++..|+++.+-.+....-.++++.+..       -.-+..++..               |      
T Consensus       259 ~~~~~~~~~~~~~~mv~~~l~~~l~~L~~rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~  338 (429)
T cd00256         259 KRVDREVKKTAALQMVQCKVLKTLQSLEQRKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEK  338 (429)
T ss_pred             cccccchhhhHHHHHHHcChHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCch
Confidence            43       23345566666655555544443343433211       1111222222               2      


Q ss_pred             ---hhhHHHhhc-cCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHH
Q 017249          226 ---EGRIAITNS-DGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR  300 (375)
Q Consensus       226 ---~~~~~~~~~-~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~  300 (375)
                         +|...+-.+ ...+..|+.+|. +.++.+..-||.=|+.++.+. |.++..+-+.|+=..+++++.+.|++++.+|.
T Consensus       339 FW~EN~~kf~~~~~~llk~L~~iL~~s~d~~~laVAc~Dige~vr~~-P~gr~i~~~lg~K~~vM~Lm~h~d~~Vr~eAL  417 (429)
T cd00256         339 FWRENADRLNEKNYELLKILIHLLETSVDPIILAVACHDIGEYVRHY-PRGKDVVEQLGGKQRVMRLLNHEDPNVRYEAL  417 (429)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhcCCCcceeehhhhhHHHHHHHC-ccHHHHHHHcCcHHHHHHHhcCCCHHHHHHHH
Confidence               233333322 224578899995 456777788999999999987 57788888899999999999999999999999


Q ss_pred             HHHHHh
Q 017249          301 TLLDLL  306 (375)
Q Consensus       301 ~~L~~l  306 (375)
                      .++..+
T Consensus       418 ~avQkl  423 (429)
T cd00256         418 LAVQKL  423 (429)
T ss_pred             HHHHHH
Confidence            998876

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.34  E-value=6.2e-10  Score=115.91  Aligned_cols=184  Identities=20%  Similarity=0.156  Sum_probs=114.5

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ....++.|+..|.++++.++..|+..|..+..            .+.++.|+..|+++++.++..|+.+|..+....+  
T Consensus       619 ~~~~~~~L~~~L~D~d~~VR~~Av~~L~~~~~------------~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~~--  684 (897)
T PRK13800        619 DAPSVAELAPYLADPDPGVRRTAVAVLTETTP------------PGFGPALVAALGDGAAAVRRAAAEGLRELVEVLP--  684 (897)
T ss_pred             cchhHHHHHHHhcCCCHHHHHHHHHHHhhhcc------------hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhccC--
Confidence            45567899999999999999999999988642            2357889999999999999999999988743111  


Q ss_pred             HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                              ..+.|...|.+.++.+|..++.+|..+..           +....|+..|.++++.++..|+.+|..+-   
T Consensus       685 --------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~-----------~~~~~l~~~L~D~d~~VR~~Av~aL~~~~---  742 (897)
T PRK13800        685 --------PAPALRDHLGSPDPVVRAAALDVLRALRA-----------GDAALFAAALGDPDHRVRIEAVRALVSVD---  742 (897)
T ss_pred             --------chHHHHHHhcCCCHHHHHHHHHHHHhhcc-----------CCHHHHHHHhcCCCHHHHHHHHHHHhccc---
Confidence                    12466677777777787777777766531           11234556666666666666666666531   


Q ss_pred             CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249          183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  262 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  262 (375)
                                ..+.|..++.+.  +..++..+..+|..+...         ....++.|..++.++++.+|..|+..|..
T Consensus       743 ----------~~~~l~~~l~D~--~~~VR~~aa~aL~~~~~~---------~~~~~~~L~~ll~D~d~~VR~aA~~aLg~  801 (897)
T PRK13800        743 ----------DVESVAGAATDE--NREVRIAVAKGLATLGAG---------GAPAGDAVRALTGDPDPLVRAAALAALAE  801 (897)
T ss_pred             ----------CcHHHHHHhcCC--CHHHHHHHHHHHHHhccc---------cchhHHHHHHHhcCCCHHHHHHHHHHHHh
Confidence                      112334444433  234455555555444221         11224445555555555555555555554


Q ss_pred             h
Q 017249          263 L  263 (375)
Q Consensus       263 l  263 (375)
                      +
T Consensus       802 ~  802 (897)
T PRK13800        802 L  802 (897)
T ss_pred             c
Confidence            4

>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional

Probab=99.33  E-value=1e-09  Score=114.28  Aligned_cols=249  Identities=17%  Similarity=0.150  Sum_probs=191.5

Q ss_pred             HhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           21 QRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        21 ~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +...+.++.|+..|.++++.++..|+..|..+.... +          ..+.|...|.++++.++..++..|..+...+ 
T Consensus       648 ~~~~~~~~~L~~aL~D~d~~VR~~Aa~aL~~l~~~~-~----------~~~~L~~~L~~~d~~VR~~A~~aL~~~~~~~-  715 (897)
T PRK13800        648 TTPPGFGPALVAALGDGAAAVRRAAAEGLRELVEVL-P----------PAPALRDHLGSPDPVVRAAALDVLRALRAGD-  715 (897)
T ss_pred             hcchhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc-C----------chHHHHHHhcCCCHHHHHHHHHHHHhhccCC-
Confidence            345667899999999999999999999998885433 1          1357888899999999999999999875322 


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                                 ...|+..|.+.++.+|..|+.+|..+-             ..+.|..++.++++.++..++.+|..+..
T Consensus       716 -----------~~~l~~~L~D~d~~VR~~Av~aL~~~~-------------~~~~l~~~l~D~~~~VR~~aa~aL~~~~~  771 (897)
T PRK13800        716 -----------AALFAAALGDPDHRVRIEAVRALVSVD-------------DVESVAGAATDENREVRIAVAKGLATLGA  771 (897)
T ss_pred             -----------HHHHHHHhcCCCHHHHHHHHHHHhccc-------------CcHHHHHHhcCCCHHHHHHHHHHHHHhcc
Confidence                       346788899999999999999988751             23557888999999999999999998854


Q ss_pred             CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249          181 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  260 (375)
Q Consensus       181 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  260 (375)
                      ..        ...++.|..++.+.  ++.++..++..|..+...          ...+..++..|.+.+..+|..|+.+|
T Consensus       772 ~~--------~~~~~~L~~ll~D~--d~~VR~aA~~aLg~~g~~----------~~~~~~l~~aL~d~d~~VR~~Aa~aL  831 (897)
T PRK13800        772 GG--------APAGDAVRALTGDP--DPLVRAAALAALAELGCP----------PDDVAAATAALRASAWQVRQGAARAL  831 (897)
T ss_pred             cc--------chhHHHHHHHhcCC--CHHHHHHHHHHHHhcCCc----------chhHHHHHHHhcCCChHHHHHHHHHH
Confidence            31        12367888888876  467888888888866321          12335678889998999999999999


Q ss_pred             HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHH
Q 017249          261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET  340 (375)
Q Consensus       261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~  340 (375)
                      ..+..            ...++.|+.++.+.++.+|..|+.+|..+...+       ...+.|...+.   +..+..+..
T Consensus       832 ~~l~~------------~~a~~~L~~~L~D~~~~VR~~A~~aL~~~~~~~-------~a~~~L~~al~---D~d~~Vr~~  889 (897)
T PRK13800        832 AGAAA------------DVAVPALVEALTDPHLDVRKAAVLALTRWPGDP-------AARDALTTALT---DSDADVRAY  889 (897)
T ss_pred             Hhccc------------cchHHHHHHHhcCCCHHHHHHHHHHHhccCCCH-------HHHHHHHHHHh---CCCHHHHHH
Confidence            87642            223488999999999999999999999873222       25566665553   556888888


Q ss_pred             HHHHHHH
Q 017249          341 AKRLLQD  347 (375)
Q Consensus       341 a~~~l~~  347 (375)
                      |.++|..
T Consensus       890 A~~aL~~  896 (897)
T PRK13800        890 ARRALAH  896 (897)
T ss_pred             HHHHHhh
Confidence            8888763

>KOG1222 consensus Kinesin associated protein KAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.32  E-value=4.6e-10  Score=102.96  Aligned_cols=289  Identities=15%  Similarity=0.127  Sum_probs=215.6

Q ss_pred             hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249           16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL   95 (375)
Q Consensus        16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L   95 (375)
                      ++...+...+.+.+|++++....++.+...++.+.|++.+.  ..|..|+..|.+|.|..+|.++.  -..-|+..|.++
T Consensus       336 eNK~~M~~~~iveKL~klfp~~h~dL~~~tl~LlfNlSFD~--glr~KMv~~GllP~l~~ll~~d~--~~~iA~~~lYh~  411 (791)
T KOG1222|consen  336 ENKIVMEQNGIVEKLLKLFPIQHPDLRKATLMLLFNLSFDS--GLRPKMVNGGLLPHLASLLDSDT--KHGIALNMLYHL  411 (791)
T ss_pred             cchHHHHhccHHHHHHHhcCCCCHHHHHHHHHHhhhccccc--cccHHHhhccchHHHHHHhCCcc--cchhhhhhhhhh
Confidence            44556777899999999999999999999999999999998  89999999999999999998763  234577888899


Q ss_pred             hccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH---------------
Q 017249           96 AVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI---------------  159 (375)
Q Consensus        96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l---------------  159 (375)
                      +. +...+..+....+++.++..+-+. +.++-...+..-.||+.+..+...+.+..++..|.+.               
T Consensus       412 S~-dD~~K~MfayTdci~~lmk~v~~~~~~~vdl~lia~ciNl~lnkRNaQlvceGqgL~~LM~ra~k~~D~lLmK~vRn  490 (791)
T KOG1222|consen  412 SC-DDDAKAMFAYTDCIKLLMKDVLSGTGSEVDLALIALCINLCLNKRNAQLVCEGQGLDLLMERAIKSRDLLLMKVVRN  490 (791)
T ss_pred             cc-CcHHHHHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHhccccceEEecCcchHHHHHHHhcccchHHHHHHHH
Confidence            98 567899999999999999876544 4444444444456777776665555544444444332               


Q ss_pred             ----------------------hcc-CCHHHHHHHHHHHHHhccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249          160 ----------------------LHS-GSVQGRVDAVTALHYLSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       160 ----------------------L~~-~~~~~~~~a~~~L~~L~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                                            ++. .+......++++|.||...+-....+ .+...+|-+-..|..+.....+.....
T Consensus       491 iSqHeg~tqn~FidyvgdLa~i~~nd~~E~F~~EClGtlanL~v~dldw~~ilq~~~LvPw~k~~L~pga~eddLvL~~v  570 (791)
T KOG1222|consen  491 ISQHEGATQNMFIDYVGDLAGIAKNDNSESFGLECLGTLANLKVTDLDWAKILQSENLVPWMKTQLQPGADEDDLVLQIV  570 (791)
T ss_pred             hhhccchHHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHhhcccCCCCHHHHHhhccccHHHHHhhcCCccchhhhhHHH
Confidence                                  211 23456778888889988765444444 457899999888887755555555556


Q ss_pred             HHHHHhhCChhhhHHHhhccCcHHHHHHHhcc--CChHHHHHHHHHHHHhcccCcHHHHHHHHHc-CChHHHHHHhhhCC
Q 017249          216 ALLEILSSSEEGRIAITNSDGGILTLVETVED--GSLVSTQHAVGALLSLCQSCRDKYRQLILKE-GAIPGLLRLTVEGT  292 (375)
Q Consensus       216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~-g~v~~L~~ll~~~~  292 (375)
                      -+++.++.+.....-+. .+|.++.++++|..  .+++..-.-+.++..+..+.  ..++.+++. ..-..|+.++++.+
T Consensus       571 i~~GT~a~d~~cA~Lla-~a~~i~tlieLL~a~QeDDEfV~QiiyVF~Q~l~He--~tr~~miket~~~AylIDLMHDkN  647 (791)
T KOG1222|consen  571 IACGTMARDLDCARLLA-PAKLIDTLIELLQACQEDDEFVVQIIYVFLQFLKHE--LTRRLMIKETALGAYLIDLMHDKN  647 (791)
T ss_pred             HHhhhhhhhhHHHHHhC-ccccHHHHHHHHHhhcccchHHHHHHHHHHHHHHHH--HHHHHHHhhccchHHHHHHHhccc
Confidence            66666666666555555 68999999999974  45666677777777777774  457777774 45568899999999


Q ss_pred             HHHHHHHHHHHHHhhcCChh
Q 017249          293 FEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       293 ~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ..+|+-+-.+|--++.+..+
T Consensus       648 ~eiRkVCDn~LdIiae~d~E  667 (791)
T KOG1222|consen  648 AEIRKVCDNALDIIAEHDKE  667 (791)
T ss_pred             HHHHHHHHHHHHHHHHhhHH
Confidence            99999999999999887743

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.29  E-value=1.4e-10  Score=106.49  Aligned_cols=254  Identities=20%  Similarity=0.186  Sum_probs=175.4

Q ss_pred             HHHHHHHhhCChhhHHHHHhc---CChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChhhHHHHHH------cCChHHH
Q 017249           47 RDIRKVVKKSSLKTRSEFAAA---GVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNERNKVKIAT------AGAIPPL  115 (375)
Q Consensus        47 ~~l~~l~~~~~~~~~~~~~~~---g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~------~g~i~~L  115 (375)
                      ..+..+-... ++.+..+++.   +....++.+|+.  ++.++....+..+..+..+++.....+..      ...+.++
T Consensus        32 ~~ik~~~~~~-~~~~~~~~~~~~~~~~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~~~~~~~~~~~~~~~~~~~~~~f  110 (312)
T PF03224_consen   32 SLIKKLDKQS-KEERRELLEEDGDQYASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDDPSRVELFLELAKQDDSDPYSPF  110 (312)
T ss_dssp             HHHHHHHHHH-H-------------------HHHHHH---HHHHHHHHHHHHHHHH-SSSSHHHHHHHHH-TTH--HHHH
T ss_pred             HHHHHHHCCC-HHHHHHHHHhchhhHHHHHHHHHHHccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHhcccccchhHHHH
Confidence            3444444444 3444445443   235566666643  57899999999999999988877766665      2368899


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc----CCHHHHHHHHHHHHHhccCCCCchhhhhc
Q 017249          116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS----GSVQGRVDAVTALHYLSTCKENSSPILDA  191 (375)
Q Consensus       116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~  191 (375)
                      ++++.+++..++..++..|..+....+.+......+.++.+++.+.+    .+...+..++.+|.+|...++.+..+.+.
T Consensus       111 l~ll~~~D~~i~~~a~~iLt~Ll~~~~~~~~~~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~  190 (312)
T PF03224_consen  111 LKLLDRNDSFIQLKAAFILTSLLSQGPKRSEKLVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKS  190 (312)
T ss_dssp             HHH-S-SSHHHHHHHHHHHHHHHTSTTT--HHHHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTH
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHHcCCccccchHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhc
Confidence            99999999999999999999998876654443335666777777765    34566799999999999999999999999


Q ss_pred             CCcHHHHHHh-----hhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcc
Q 017249          192 TAVPPLINLL-----KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       192 g~i~~Lv~ll-----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~  265 (375)
                      ++++.++.++     .++.....++-.++-++|.|+.+++....+. ..+.++.|+.+++. ..+++..-++.+|.|+..
T Consensus       191 ~~v~~l~~iL~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~~~-~~~~i~~L~~i~~~~~KEKvvRv~la~l~Nl~~  269 (312)
T PF03224_consen  191 NGVSPLFDILRKQATNSNSSGIQLQYQALLCLWLLSFEPEIAEELN-KKYLIPLLADILKDSIKEKVVRVSLAILRNLLS  269 (312)
T ss_dssp             HHHHHHHHHHH---------HHHHHHHHHHHHHHHTTSHHHHHHHH-TTSHHHHHHHHHHH--SHHHHHHHHHHHHHTTS
T ss_pred             CcHHHHHHHHHhhcccCCCCchhHHHHHHHHHHHHhcCHHHHHHHh-ccchHHHHHHHHHhcccchHHHHHHHHHHHHHh
Confidence            9999999999     3333355778889999999999999999998 56799999999974 568999999999999999


Q ss_pred             cCcHHHHHHHHHcCChHHHHHHhhh--CCHHHHHHHHHH
Q 017249          266 SCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTL  302 (375)
Q Consensus       266 ~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~~~~~A~~~  302 (375)
                      .........++..|+++.|-.+...  .|++..+.-..+
T Consensus       270 ~~~~~~~~~mv~~~~l~~l~~L~~rk~~Dedl~edl~~L  308 (312)
T PF03224_consen  270 KAPKSNIELMVLCGLLKTLQNLSERKWSDEDLTEDLEFL  308 (312)
T ss_dssp             SSSTTHHHHHHHH-HHHHHHHHHSS--SSHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence            8754477888888888777776654  477777654443

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.27  E-value=2.5e-09  Score=101.72  Aligned_cols=318  Identities=16%  Similarity=0.125  Sum_probs=203.7

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           29 ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        29 ~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      .++.-+...+++....|..-..++..+. +..+..+.+.|.++.|+.+++..  ..+........+..+..+.......+
T Consensus        13 ~~l~~L~~~dpe~lvrai~~~kN~vig~-~~~K~~~ik~GAv~~Ll~L~s~e~~s~~~k~~~~~llns~f~~eqd~v~sv   91 (678)
T KOG1293|consen   13 DLLYRLLHLDPEQLVRAIYMSKNLVIGF-TDNKETNIKLGAVELLLALLSLEDGSTELKNGFAVLLNSLFLGEQDKVDSV   91 (678)
T ss_pred             HHHHhhhcCCHHHHHHHHHHhcchhhcC-CCccchhhhhcchHHHHhhccccCCchhhhhhHHHHHHhHHhhccchHHHH
Confidence            3444555778888889999999998888 66777899999999999998765  46667677778888888888889999


Q ss_pred             HHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccCCHHHH--------------
Q 017249          107 ATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSGSVQGR--------------  168 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~~~~~~--------------  168 (375)
                      ...+.++.|+++|...+ ..++...+.++.++....+.++..   .....++.+..++..+.....              
T Consensus        92 L~~~~ll~Ll~LLs~sD~~~~le~~l~~lR~Ifet~~~q~~~~s~~~~sIi~~~s~l~s~~lk~~~~l~~~~~a~~s~~~  171 (678)
T KOG1293|consen   92 LRIIELLKLLQLLSESDSLNVLEKTLRCLRTIFETSKYQDKKMSLHLKSIIVKFSLLYSIELKYISRLDVSRAAHLSSTK  171 (678)
T ss_pred             HHHhhHHHHHHHhcCcchHhHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHHhhhhhhhhhhhhhhhccccccc
Confidence            99999999999999888 889999999999988765433222   122223333222220100000              


Q ss_pred             ------------------------HHHHHHHHHhc------cCCC-Cchhh----hhcCCcHH--HHHHhhhcccchHHH
Q 017249          169 ------------------------VDAVTALHYLS------TCKE-NSSPI----LDATAVPP--LINLLKDCKKYSKFA  211 (375)
Q Consensus       169 ------------------------~~a~~~L~~L~------~~~~-~~~~i----~~~g~i~~--Lv~ll~~~~~~~~~~  211 (375)
                                              ..-+.++..++      .+++ ....+    .+.|+.+.  +.+++.++.......
T Consensus       172 ~hq~Il~Na~i~ekI~~l~~~~s~~~RlaaL~~~sr~~~iL~Nn~~~sm~~l~~L~d~~v~~r~~v~rL~k~~~~s~~l~  251 (678)
T KOG1293|consen  172 DHQLILCNAGILEKINILLMYLSSKLRLAALLCLSRGDRILRNNPLGSMFLLGLLKDKGVNIRCVVTRLLKDPDFSERLR  251 (678)
T ss_pred             hhhheeccccchhhHHHHHHhhhHHHHHHHHHHhhccceeeecCchhHHHHHHHHhccccchhhhhhhhhhCCCccHHHH
Confidence                                    01112222222      1111 11001    11122221  111111111000000


Q ss_pred             --------------------------------------------------------------------------------
Q 017249          212 --------------------------------------------------------------------------------  211 (375)
Q Consensus       212 --------------------------------------------------------------------------------  211 (375)
                                                                                                      
T Consensus       252 sl~cl~~~~~~s~~~d~l~~~~~~~dmgd~~i~q~~~i~l~~~P~~s~l~~~~~l~c~~a~~~sklq~~~~e~~~~~~~~  331 (678)
T KOG1293|consen  252 SLECLVPYLRKSFNYDPLPWWFIFFDMGDSLIVQYNCIVLMNDPGLSTLDHTNVLFCILARFASKLQLPQHEEATLKTTT  331 (678)
T ss_pred             HHHHHHHHHhccccccccccceeeccCchHHHHHHhhheeecCCceeehhhhhhhHHHHHHHHHhhhhHHhhhhhhhhHH
Confidence                                                                                            


Q ss_pred             ---------------------------------------------------------------HHHHHHHHHhhCChhh-
Q 017249          212 ---------------------------------------------------------------EKATALLEILSSSEEG-  227 (375)
Q Consensus       212 ---------------------------------------------------------------~~a~~~L~~l~~~~~~-  227 (375)
                                                                                     .+++-++.+++.+-.. 
T Consensus       332 ellf~~~sl~a~~~~~~~i~l~e~~i~~~~~~~~~i~~~k~~l~~~t~~~l~~~~~~kd~~~~aaa~l~~~s~srsV~aL  411 (678)
T KOG1293|consen  332 ELLFICASLAASDEKYRLILLNETLILNHLEYGLEISLKKEILETTTESHLMCLPPIKDHDFVAAALLCLKSFSRSVSAL  411 (678)
T ss_pred             HHHHHHHHHhhcchhhhHHHhhhhhhhhhhhhhcchhHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHH
Confidence                                                                           1112222222221111 


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      +.. .....+.+.|++++.+++..+...++++|+|+.-.-. ..+..+++.|+|+.|.+++.+.++.++..+.|+|+++.
T Consensus       412 ~tg-~~~~dv~~plvqll~dp~~~i~~~~lgai~NlVmefs-~~kskfl~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~  489 (678)
T KOG1293|consen  412 RTG-LKRNDVAQPLVQLLMDPEIMIMGITLGAICNLVMEFS-NLKSKFLRNNGIDILESMLTDPDFNSRANSLWVLRHLM  489 (678)
T ss_pred             HcC-CccchhHHHHHHHhhCcchhHHHHHHHHHHHHHhhcc-cHHHHHHHcCcHHHHHHHhcCCCchHHHHHHHHHHHHH
Confidence            111 2245678899999999999999999999999987642 56899999999999999999999999999999999998


Q ss_pred             cCChhh---hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          308 DTPQEK---RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       308 ~~~~~~---~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      -...++   ..-..+-...+..+.  .|.....++++-.+|+||+-.
T Consensus       490 f~~de~~k~~~~~ki~a~~i~~l~--nd~d~~Vqeq~fqllRNl~c~  534 (678)
T KOG1293|consen  490 FNCDEEEKFQLLAKIPANLILDLI--NDPDWAVQEQCFQLLRNLTCN  534 (678)
T ss_pred             hcchHHHHHHHHHHhhHHHHHHHH--hCCCHHHHHHHHHHHHHhhcC
Confidence            777542   122222222333343  577799999999999999633

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.25  E-value=2.6e-09  Score=95.52  Aligned_cols=184  Identities=21%  Similarity=0.220  Sum_probs=150.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249           36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL  115 (375)
Q Consensus        36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L  115 (375)
                      +.+++.+..|+.-|..++..-  .+..-+...||+.+++.++++.++.+|+.|+++|+..+..+|..+..+.+.|+.+.|
T Consensus        94 s~~le~ke~ald~Le~lve~i--DnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~L  171 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVEDI--DNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKL  171 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHHhh--hhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHH
Confidence            568899999999999999888  788889999999999999999999999999999999999999999999999999999


Q ss_pred             HHhhcCC-ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccCCCCchhhhh-
Q 017249          116 VELLKFQ-NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTCKENSSPILD-  190 (375)
Q Consensus       116 v~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~-  190 (375)
                      +..+.+. +..++..|+.++.++..+.. ....+...++...|.+++.++  +...+..++..+.+|.........+.. 
T Consensus       172 l~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d~~~~  251 (342)
T KOG2160|consen  172 LKILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDEDIASS  251 (342)
T ss_pred             HHHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhhHHHH
Confidence            9999876 55677999999999988754 677788888899999999995  577899999999999866433333444 


Q ss_pred             cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                      .+....++.+.....  ..+.+.+...+..+..
T Consensus       252 ~~f~~~~~~l~~~l~--~~~~e~~l~~~l~~l~  282 (342)
T KOG2160|consen  252 LGFQRVLENLISSLD--FEVNEAALTALLSLLS  282 (342)
T ss_pred             hhhhHHHHHHhhccc--hhhhHHHHHHHHHHHH
Confidence            455555555555442  2456667666655544

>cd00256 VATPase_H VATPase_H, regulatory vacuolar ATP synthase subunit H (Vma13p); activation component of the peripheral V1 complex of V-ATPase, a heteromultimeric enzyme which uses ATP to actively transport protons into organelles and extracellular compartments

Probab=99.24  E-value=1.4e-08  Score=95.07  Aligned_cols=319  Identities=13%  Similarity=0.059  Sum_probs=223.8

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-----CChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-----GVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-----g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ...+..++.+|+ .+..++....+..+..+.... +.....|.+.     ....+++.+|..++.-+...++..|..+..
T Consensus        52 ~~y~~~~l~ll~~~~~~d~vqyvL~Li~dll~~~-~~~~~~f~~~~~~~~~~~~~fl~lL~~~d~~i~~~a~~iLt~l~~  130 (429)
T cd00256          52 GQYVKTFVNLLSQIDKDDTVRYVLTLIDDMLQED-DTRVKLFHDDALLKKKTWEPFFNLLNRQDQFIVHMSFSILAKLAC  130 (429)
T ss_pred             HHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHhc-hHHHHHHHHHhhccccchHHHHHHHcCCchhHHHHHHHHHHHHHh
Confidence            356777888887 667888889999999999988 6666666664     467788899999999999999999999885


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHHHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAVTA  174 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~  174 (375)
                      ..+.........-.++.|...++++ +...+..++.+|..|...++.|..+...++++.|+++|+..  +...++.++-+
T Consensus       131 ~~~~~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~v~~L~~LL~~~~~R~~f~~~~~v~~L~~~L~~~~~~~Ql~Y~~ll~  210 (429)
T cd00256         131 FGLAKMEGSDLDYYFNWLKEQLNNITNNDYVQTAARCLQMLLRVDEYRFAFVLADGVPTLVKLLSNATLGFQLQYQSIFC  210 (429)
T ss_pred             cCccccchhHHHHHHHHHHHHhhccCCcchHHHHHHHHHHHhCCchHHHHHHHccCHHHHHHHHhhccccHHHHHHHHHH
Confidence            4332211111111334566666654 46778889999999999999999888888999999999764  45789999999


Q ss_pred             HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-------hhhHHHhhccCcHHHHHHHhcc
Q 017249          175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-------EGRIAITNSDGGILTLVETVED  247 (375)
Q Consensus       175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~v~~Lv~lL~~  247 (375)
                      +|-|+..++........+.++.++++++... .+++.+-++.+|.|+...+       .....++ .. .++.++..|..
T Consensus       211 lWlLSF~~~~~~~~~~~~~i~~l~~i~k~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~mv-~~-~l~~~l~~L~~  287 (429)
T cd00256         211 IWLLTFNPHAAEVLKRLSLIQDLSDILKEST-KEKVIRIVLAIFRNLISKRVDREVKKTAALQMV-QC-KVLKTLQSLEQ  287 (429)
T ss_pred             HHHHhccHHHHHhhccccHHHHHHHHHHhhh-hHHHHHHHHHHHHHHhhcccccchhhhHHHHHH-Hc-ChHHHHHHHhc
Confidence            9999988777677777899999999999875 4577888999999998743       2233444 33 44555555542


Q ss_pred             ---CChHHHHHHH-------HHHHHhcc--------------c-----Cc---HHHHHHHHHcC--ChHHHHHHhh-hCC
Q 017249          248 ---GSLVSTQHAV-------GALLSLCQ--------------S-----CR---DKYRQLILKEG--AIPGLLRLTV-EGT  292 (375)
Q Consensus       248 ---~~~~~~~~a~-------~~L~~l~~--------------~-----~~---~~~~~~l~~~g--~v~~L~~ll~-~~~  292 (375)
                         .++.+.+.--       ..+..++.              .     +.   .++...+-+.+  ++..|++++. +.|
T Consensus       288 rk~~DedL~edl~~L~e~L~~~~k~ltsfD~Y~~El~sg~L~WSp~H~se~FW~EN~~kf~~~~~~llk~L~~iL~~s~d  367 (429)
T cd00256         288 RKYDDEDLTDDLKFLTEELKNSVQDLSSFDEYKSELRSGRLHWSPVHKSEKFWRENADRLNEKNYELLKILIHLLETSVD  367 (429)
T ss_pred             CCCCcHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHhcCCccCCCCCCCchHHHHHHHHHHhcchHHHHHHHHHHhcCCC
Confidence               2333322111       11111111              1     10   12334444432  6688888885 567


Q ss_pred             HHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          293 FEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       293 ~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      |.+..-|+.=+..+.++.|.   -+-+.|+=..++..|.   ...+..+..|-.+++.|.
T Consensus       368 ~~~laVAc~Dige~vr~~P~gr~i~~~lg~K~~vM~Lm~---h~d~~Vr~eAL~avQklm  424 (429)
T cd00256         368 PIILAVACHDIGEYVRHYPRGKDVVEQLGGKQRVMRLLN---HEDPNVRYEALLAVQKLM  424 (429)
T ss_pred             cceeehhhhhHHHHHHHCccHHHHHHHcCcHHHHHHHhc---CCCHHHHHHHHHHHHHHH
Confidence            88887788877777776543   2345777777887775   345899999999998875

The topology is that of a superhelical spiral, in part the geometry is similar to superhelices composed of armadillo repeat motifs, as found in importins for example.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=99.23  E-value=1e-09  Score=100.38  Aligned_cols=276  Identities=17%  Similarity=0.144  Sum_probs=201.0

Q ss_pred             HHHHHhhHhHHHHHHHHhcCCCHHH--HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHH
Q 017249           17 EAWNQRKQALIEELSDKLINGDLET--KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALL   93 (375)
Q Consensus        17 ~~~~~~~~~~l~~Lv~~L~s~~~~~--~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~   93 (375)
                      .+..+...+++..|++++++++.+.  +.+|.+.|-.+...   +++++++..| +..++.+.+. ..++.+...+..|.
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~a---eN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~  247 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILVA---ENRDRVARIG-LGVILNLAKEREPVELARSVAGILE  247 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHhh---hhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHH
Confidence            3557788899999999999988765  88999999887755   4899998877 5555555533 35788899999999


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC--CChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                      ++.+.+++....+++.|++..++--.+..+|.+..+++-+|.|++.+.  ..+..+++...-+.|..+-.+.+.-.+.+|
T Consensus       248 ~mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~skDel~R~~A  327 (832)
T KOG3678|consen  248 HMFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSKDELLRLHA  327 (832)
T ss_pred             HHhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcchHHHHHHHH
Confidence            999999999999999999999999999999999999999999998874  367788888888899988888888889999


Q ss_pred             HHHHHHhccCCCCchhhhhcCC---cHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC
Q 017249          172 VTALHYLSTCKENSSPILDATA---VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG  248 (375)
Q Consensus       172 ~~~L~~L~~~~~~~~~i~~~g~---i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~  248 (375)
                      |.+.+.|+.+.+.-..+-.+|.   +++++..+..+.    ...           +..... .-+....++.|+.+|++.
T Consensus       328 ClAV~vlat~KE~E~~VrkS~TlaLVEPlva~~DP~~----FAR-----------D~hd~a-QG~~~d~LqRLvPlLdS~  391 (832)
T KOG3678|consen  328 CLAVAVLATNKEVEREVRKSGTLALVEPLVASLDPGR----FAR-----------DAHDYA-QGRGPDDLQRLVPLLDSN  391 (832)
T ss_pred             HHHHhhhhhhhhhhHHHhhccchhhhhhhhhccCcch----hhh-----------hhhhhh-ccCChHHHHHhhhhhhcc
Confidence            9999999988766666555554   344444433221    111           100000 001234577899999865


Q ss_pred             ChHHHHHHHHHHHHhcccCcHHHHHH-HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          249 SLVSTQHAVGALLSLCQSCRDKYRQL-ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       249 ~~~~~~~a~~~L~~l~~~~~~~~~~~-l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      .-+.+--++.-++.=+.-...+.+.. +.+-|+++.|.++..+.+.-..+.|..+|..+.+..+.
T Consensus       392 R~EAq~i~AF~l~~EAaIKs~Q~K~kVFseIGAIQaLKevaSS~d~vaakfAseALtviGEEVP~  456 (832)
T KOG3678|consen  392 RLEAQCIGAFYLCAEAAIKSLQGKTKVFSEIGAIQALKEVASSPDEVAAKFASEALTVIGEEVPY  456 (832)
T ss_pred             hhhhhhhHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHhccccCh
Confidence            54443333333322222111123333 44579999999999988888888899999999987654

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.20  E-value=1e-08  Score=99.24  Aligned_cols=282  Identities=17%  Similarity=0.181  Sum_probs=216.0

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccCh
Q 017249           24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~  100 (375)
                      .+.|++|+..+. +.=++.++.|++.|..+++.-    |.. +-..|+++|+..|..+  |+++...++.++.++...++
T Consensus        21 aETI~kLcDRvessTL~eDRR~A~rgLKa~srkY----R~~-Vga~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~dd   95 (970)
T KOG0946|consen   21 AETIEKLCDRVESSTLLEDRRDAVRGLKAFSRKY----REE-VGAQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHDD   95 (970)
T ss_pred             HhHHHHHHHHHhhccchhhHHHHHHHHHHHHHHH----HHH-HHHcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcCc
Confidence            567899999887 456788999999999987544    443 3455699999999775  79999999999999886542


Q ss_pred             ------hhH----------HHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHH-HhcCChHHHHHHh
Q 017249          101 ------RNK----------VKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAI-AASGAAPLLVQIL  160 (375)
Q Consensus       101 ------~~r----------~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i-~~~~~l~~L~~lL  160 (375)
                            ..+          +.++. .+.|..|+..++..+..+|..++..+.++....+  .+..+ ..+-+|..|+.+|
T Consensus        96 ~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~VR~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL  175 (970)
T KOG0946|consen   96 SPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHVRLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLL  175 (970)
T ss_pred             chhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhhhhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHH
Confidence                  111          23443 7889999999999999999999999999877654  34444 5788999999999


Q ss_pred             ccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccCc
Q 017249          161 HSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDGG  237 (375)
Q Consensus       161 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  237 (375)
                      .+....++-.++..|+.|+.++...+.++. .+++..|..++....  +...+.+.|+..|.||-.++...+.++.+.+.
T Consensus       176 ~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIeeEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~  255 (970)
T KOG0946|consen  176 RDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIEEEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSY  255 (970)
T ss_pred             hhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhcccc
Confidence            999999999999999999999888887776 789999999998643  23357788999999999765444444448899


Q ss_pred             HHHHHHHhcc---CCh----------HHHHHHHHHHHHhcccCc-----HHHHHHHHHcCChHHHHHHhhhC--CHHHHH
Q 017249          238 ILTLVETVED---GSL----------VSTQHAVGALLSLCQSCR-----DKYRQLILKEGAIPGLLRLTVEG--TFEAQE  297 (375)
Q Consensus       238 v~~Lv~lL~~---~~~----------~~~~~a~~~L~~l~~~~~-----~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~  297 (375)
                      +|+|.++|.-   ++.          .-...++.++..+..-++     ..++..+.+.+++..|+.++.+.  ..+++.
T Consensus       256 i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~Nt~~~~~q~qk~l~ss~ll~~Lc~il~~~~vp~dIlt  335 (970)
T KOG0946|consen  256 IPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPGNTSSITHQNQKALVSSHLLDVLCTILMHPGVPADILT  335 (970)
T ss_pred             HHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHcchHHHHHHHHcCCCCcHhHHH
Confidence            9999988842   221          112345666666655433     24556788899999999976644  578888


Q ss_pred             HHHHHHHHhhcCC
Q 017249          298 RARTLLDLLRDTP  310 (375)
Q Consensus       298 ~A~~~L~~l~~~~  310 (375)
                      .+.-+++..-+..
T Consensus       336 esiitvAevVRgn  348 (970)
T KOG0946|consen  336 ESIITVAEVVRGN  348 (970)
T ss_pred             HHHHHHHHHHHhc
Confidence            8888888776655

>PF03224 V-ATPase_H_N: V-ATPase subunit H; InterPro: IPR004908 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=99.16  E-value=6.4e-10  Score=102.05  Aligned_cols=215  Identities=18%  Similarity=0.166  Sum_probs=156.1

Q ss_pred             HHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc------CChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           27 IEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA------GVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        27 l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~------g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      ...++.+|+  +++++.....+..+..+.... +...+.+...      ....++++++.++|.-++..|+..|..+...
T Consensus        57 ~~~~l~lL~~~~~~~d~v~yvL~li~dll~~~-~~~~~~~~~~~~~~~~~~~~~fl~ll~~~D~~i~~~a~~iLt~Ll~~  135 (312)
T PF03224_consen   57 ASLFLNLLNKLSSNDDTVQYVLTLIDDLLSDD-PSRVELFLELAKQDDSDPYSPFLKLLDRNDSFIQLKAAFILTSLLSQ  135 (312)
T ss_dssp             -----HHHHHH---HHHHHHHHHHHHHHHH-S-SSSHHHHHHHHH-TTH--HHHHHHH-S-SSHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHccCcHHHHHHHHHHHHHHHhcC-HHHHHHHHHhcccccchhHHHHHHHhcCCCHHHHHHHHHHHHHHHHc
Confidence            455556665  478899999999999999988 6666666552      2678899999999999999999999999875


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcC----CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-----ccC--CHHH
Q 017249           99 NERNKVKIATAGAIPPLVELLKF----QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-----HSG--SVQG  167 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-----~~~--~~~~  167 (375)
                      .+..... ...+.++.++..+.+    .+.+.+..++.+|.+|...++.+..+.+.++++.|.+++     .++  +..+
T Consensus       136 ~~~~~~~-~~~~~l~~ll~~L~~~l~~~~~~~~~~av~~L~~LL~~~~~R~~f~~~~~v~~l~~iL~~~~~~~~~~~~Ql  214 (312)
T PF03224_consen  136 GPKRSEK-LVKEALPKLLQWLSSQLSSSDSELQYIAVQCLQNLLRSKEYRQVFWKSNGVSPLFDILRKQATNSNSSGIQL  214 (312)
T ss_dssp             TTT--HH-HHHHHHHHHHHHHH-TT-HHHH---HHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHH---------HHHH
T ss_pred             CCccccc-hHHHHHHHHHHHHHHhhcCCCcchHHHHHHHHHHHhCcchhHHHHHhcCcHHHHHHHHHhhcccCCCCchhH
Confidence            4443333 225566788877765    345677899999999999889999999999999999999     222  4678


Q ss_pred             HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh--hhHHHhhccCcHHHHHHHh
Q 017249          168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE--GRIAITNSDGGILTLVETV  245 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~~~~g~v~~Lv~lL  245 (375)
                      +++++.++|-|+..++....+...+.++.|+++++... .+++.+-++.+|.|+.....  ....++ ..|+ ..+++.|
T Consensus       215 ~Y~~ll~lWlLSF~~~~~~~~~~~~~i~~L~~i~~~~~-KEKvvRv~la~l~Nl~~~~~~~~~~~mv-~~~~-l~~l~~L  291 (312)
T PF03224_consen  215 QYQALLCLWLLSFEPEIAEELNKKYLIPLLADILKDSI-KEKVVRVSLAILRNLLSKAPKSNIELMV-LCGL-LKTLQNL  291 (312)
T ss_dssp             HHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHH---SHHHHHHHHHHHHHTTSSSSTTHHHHHH-HH-H-HHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHhccchHHHHHHHHHhcc-cchHHHHHHHHHHHHHhccHHHHHHHHH-HccH-HHHHHHH
Confidence            99999999999999999999999899999999999876 45788889999999998655  777777 3444 4444444


Q ss_pred             c
Q 017249          246 E  246 (375)
Q Consensus       246 ~  246 (375)
                      .
T Consensus       292 ~  292 (312)
T PF03224_consen  292 S  292 (312)
T ss_dssp             H
T ss_pred             h
Confidence            3

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0046961 proton-transporting ATPase activity, rotational mechanism, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=99.15  E-value=3.2e-09  Score=96.22  Aligned_cols=277  Identities=14%  Similarity=0.041  Sum_probs=198.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCC-hHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGV-VQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~-v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      -.+.+.+|...+......+.++|+.++... . ++-...+... ...|-..+.+ .+.+.+.-++++|..+.. -+++|.
T Consensus       116 ~~~fl~ll~r~d~~iv~~~~~Ils~la~~g-~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~-~~eyR~  192 (442)
T KOG2759|consen  116 WLSFLNLLNRQDTFIVEMSFRILSKLACFG-N-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLR-VDEYRY  192 (442)
T ss_pred             hHHHHHHHhcCChHHHHHHHHHHHHHHHhc-c-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhc-Ccchhh
Confidence            567788888889988888999999998776 2 2111111111 2233344444 667888999999999998 678999


Q ss_pred             HHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHhccC
Q 017249          105 KIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTC  181 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L~~~  181 (375)
                      .++...++..++..+.+.  +..++...+.|+|-|+.++.....+...+.++.|.++++... ..+.+-++.++.|+...
T Consensus       193 ~~v~adg~~~l~~~l~s~~~~~QlQYqsifciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~KEKV~Rivlai~~Nll~k  272 (442)
T KOG2759|consen  193 AFVIADGVSLLIRILASTKCGFQLQYQSIFCIWLLTFNPHAAEKLKRFDLIQDLSDIVKESTKEKVTRIVLAIFRNLLDK  272 (442)
T ss_pred             eeeecCcchhhHHHHhccCcchhHHHHHHHHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            999999999999988433  788999999999999999887777777899999999998764 67899999999999876


Q ss_pred             CC-------CchhhhhcCCcHHHHHHhhh-cccchHHHHHHH-------HHHHHhhCC---------------h------
Q 017249          182 KE-------NSSPILDATAVPPLINLLKD-CKKYSKFAEKAT-------ALLEILSSS---------------E------  225 (375)
Q Consensus       182 ~~-------~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~-------~~L~~l~~~---------------~------  225 (375)
                      .+       ....++..+ +++.++.|.. .-.++++....-       .-...|+..               |      
T Consensus       273 ~~~~~~~k~~~~~mv~~~-v~k~l~~L~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~  351 (442)
T KOG2759|consen  273 GPDRETKKDIASQMVLCK-VLKTLQSLEERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEK  351 (442)
T ss_pred             CchhhHHHHHHHHHHhcC-chHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccc
Confidence            52       233444444 4444455543 322333332111       111222322               1      


Q ss_pred             ---hhhHHHhh-ccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHH
Q 017249          226 ---EGRIAITN-SDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERAR  300 (375)
Q Consensus       226 ---~~~~~~~~-~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~  300 (375)
                         +|...+-. ....+..|+.+|+..+ |.+-.-||.=+.....+. |+++..+.+.|+=+.+++++.+.||+|+.+|.
T Consensus       352 FW~eNa~rlnennyellkiL~~lLe~s~Dp~iL~VAc~DIge~Vr~y-P~gk~vv~k~ggKe~vM~Llnh~d~~Vry~AL  430 (442)
T KOG2759|consen  352 FWRENADRLNENNYELLKILIKLLETSNDPIILCVACHDIGEYVRHY-PEGKAVVEKYGGKERVMNLLNHEDPEVRYHAL  430 (442)
T ss_pred             hHHHhHHHHhhccHHHHHHHHHHHhcCCCCceeehhhhhHHHHHHhC-chHhHHHHHhchHHHHHHHhcCCCchHHHHHH
Confidence               12222221 2245778899998654 777778888899998887 68899999999999999999999999999999


Q ss_pred             HHHHHhhc
Q 017249          301 TLLDLLRD  308 (375)
Q Consensus       301 ~~L~~l~~  308 (375)
                      .++..|-.
T Consensus       431 lavQ~lm~  438 (442)
T KOG2759|consen  431 LAVQKLMV  438 (442)
T ss_pred             HHHHHHHh
Confidence            98877643

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.12  E-value=3.1e-09  Score=101.00  Aligned_cols=307  Identities=14%  Similarity=0.107  Sum_probs=210.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc----CChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA----GVVQPLVLMLVSPNLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~----g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~   99 (375)
                      -+.+|.|.++|.+++...+.-|..+|.+++.++ .+.-+.-+..    -.+|.++++.+++++.+|..|+.++....-. 
T Consensus       127 pelLp~L~~~L~s~d~n~~EgA~~AL~KIcEDs-a~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~-  204 (885)
T KOG2023|consen  127 PELLPQLCELLDSPDYNTCEGAFGALQKICEDS-AQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIII-  204 (885)
T ss_pred             hhHHHHHHHHhcCCcccccchhHHHHHHHHhhh-HHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeec-
Confidence            457899999999999999999999999999888 3332221111    2588999999999999999999999987753 


Q ss_pred             hhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          100 ERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       100 ~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                       .....+.. -..++-+..+-...++++|...+.++..|......+-.---.++++.++..-++.+..+-..||.....+
T Consensus       205 -~~qal~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~dE~VALEACEFwla~  283 (885)
T KOG2023|consen  205 -QTQALYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDVDENVALEACEFWLAL  283 (885)
T ss_pred             -CcHHHHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCcchhHHHHHHHHHHHH
Confidence             23444444 3456677777777899999999999999876544332222357788888888899999999999999999


Q ss_pred             ccCCCCchhhhh--cCCcHHHHHHhhhcccchH-----------------------------------------------
Q 017249          179 STCKENSSPILD--ATAVPPLINLLKDCKKYSK-----------------------------------------------  209 (375)
Q Consensus       179 ~~~~~~~~~i~~--~g~i~~Lv~ll~~~~~~~~-----------------------------------------------  209 (375)
                      +..+..+..+..  ...+|.|+.-+.-+..+..                                               
T Consensus       284 aeqpi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDd  363 (885)
T KOG2023|consen  284 AEQPICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDD  363 (885)
T ss_pred             hcCcCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCccccccccccccccccc
Confidence            988744433332  3566666653322111100                                               


Q ss_pred             -------HHH---HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh----ccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249          210 -------FAE---KATALLEILSSSEEGRIAITNSDGGILTLVETV----EDGSLVSTQHAVGALLSLCQSCRDKYRQLI  275 (375)
Q Consensus       210 -------~~~---~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l  275 (375)
                             ++.   +++.+|.|+          . ....++.++++|    .+..=.+|+.++-+|+.++.++.    +-+
T Consensus       364 D~~~dWNLRkCSAAaLDVLanv----------f-~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM----~g~  428 (885)
T KOG2023|consen  364 DAFSDWNLRKCSAAALDVLANV----------F-GDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCM----QGF  428 (885)
T ss_pred             cccccccHhhccHHHHHHHHHh----------h-HHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHh----hhc
Confidence                   111   122222222          1 123445555554    45556788999999999988763    233


Q ss_pred             HH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-h--hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          276 LK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-K--RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       276 ~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~--~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      +.  ...+|.|++++.+..|-+|.-++|+|...+..--+ .  ..=..++.+|+..+   .|+..+.++.|..+...+-+
T Consensus       429 ~p~LpeLip~l~~~L~DKkplVRsITCWTLsRys~wv~~~~~~~~f~pvL~~ll~~l---lD~NK~VQEAAcsAfAtleE  505 (885)
T KOG2023|consen  429 VPHLPELIPFLLSLLDDKKPLVRSITCWTLSRYSKWVVQDSRDEYFKPVLEGLLRRL---LDSNKKVQEAACSAFATLEE  505 (885)
T ss_pred             ccchHHHHHHHHHHhccCccceeeeeeeeHhhhhhhHhcCChHhhhHHHHHHHHHHH---hcccHHHHHHHHHHHHHHHH
Confidence            33  34789999999999999999999999988764411 1  11122445555554   47779999999998888754


Q ss_pred             H
Q 017249          351 R  351 (375)
Q Consensus       351 ~  351 (375)
                      .
T Consensus       506 ~  506 (885)
T KOG2023|consen  506 E  506 (885)
T ss_pred             h
Confidence            4

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.12  E-value=1.1e-08  Score=89.07  Aligned_cols=279  Identities=19%  Similarity=0.174  Sum_probs=190.8

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA  148 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  148 (375)
                      ...++++|.+.++.++..|+.-+..++..  ..+..... .-.++.+.+++....+  -+.|+.+|.|++..+.-+..+.
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~--~~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq~~~l~~~ll   80 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGR--GLQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQKEELRKKLL   80 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhcccc--chhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHhhHHHHHHHH
Confidence            34688999999999999999999999985  44544443 3457788888877666  5688899999999988777776


Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-------cCCcHHHHHHhhhcccchHHHHHHHHHHHHh
Q 017249          149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-------ATAVPPLINLLKDCKKYSKFAEKATALLEIL  221 (375)
Q Consensus       149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-------~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l  221 (375)
                      .. .+..+++++.++....-...|.+|.||+..++....+..       .|.+.....+...+-....-......++.||
T Consensus        81 ~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~nl  159 (353)
T KOG2973|consen   81 QD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFANL  159 (353)
T ss_pred             HH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHHHH
Confidence            55 888899999888777788889999999988765554432       3444444444443321112235677889999


Q ss_pred             hCChhhhHHHhhccCcHH--HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc--CChHHHH------------
Q 017249          222 SSSEEGRIAITNSDGGIL--TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE--GAIPGLL------------  285 (375)
Q Consensus       222 ~~~~~~~~~~~~~~g~v~--~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--g~v~~L~------------  285 (375)
                      +..+.+|..+. +...++  .++.+-..++..-+...+++|.|+|...  .....+...  ..+|.++            
T Consensus       160 s~~~~gR~l~~-~~k~~p~~kll~ft~~~s~vRr~GvagtlkN~cFd~--~~h~~lL~e~~~lLp~iLlPlagpee~sEE  236 (353)
T KOG2973|consen  160 SQFEAGRKLLL-EPKRFPDQKLLPFTSEDSQVRRGGVAGTLKNCCFDA--KLHEVLLDESINLLPAILLPLAGPEELSEE  236 (353)
T ss_pred             hhhhhhhhHhc-chhhhhHhhhhcccccchhhhccchHHHHHhhhccc--hhHHHHhcchHHHHHHHHhhcCCccccCHH
Confidence            99999999988 455332  3444444345556678899999999876  333333332  2333332            


Q ss_pred             ---------HHhh-----hCCHHHHHHHHHHHHHhhcCC-hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          286 ---------RLTV-----EGTFEAQERARTLLDLLRDTP-QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       286 ---------~ll~-----~~~~~~~~~A~~~L~~l~~~~-~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                               +++-     +.+|.+++.-+.+|-.||-.. ..+.+....+.++++.+..-... ++.++..-.+.+.+++
T Consensus       237 dm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~~GRe~lR~kgvYpilRElhk~e~d-ed~~~ace~vvq~Lv~  315 (353)
T KOG2973|consen  237 DMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATRAGREVLRSKGVYPILRELHKWEED-EDIREACEQVVQMLVR  315 (353)
T ss_pred             HHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhhHhHHHHHhcCchHHHHHHhcCCCc-HHHHHHHHHHHHHHHh
Confidence                     3332     357889999999877776544 22455555555677888755543 7788877778888876


Q ss_pred             HHHHHhH
Q 017249          351 RSMELSM  357 (375)
Q Consensus       351 ~s~~~~~  357 (375)
                      .-...-|
T Consensus       316 ~e~~~G~  322 (353)
T KOG2973|consen  316 LEPEIGI  322 (353)
T ss_pred             cccccch
Confidence            4443333

>KOG1293 consensus Proteins containing armadillo/beta-catenin-like repeat [General function prediction only]

Probab=99.11  E-value=4.2e-08  Score=93.52  Aligned_cols=118  Identities=19%  Similarity=0.171  Sum_probs=96.4

Q ss_pred             cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249          191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD  269 (375)
Q Consensus       191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  269 (375)
                      ..++.+|+.++..+  ...+...++++|+|+.. ...-+..++ ..|+|+.+..++.+.++..+..++|+|+++..++..
T Consensus       418 ~dv~~plvqll~dp--~~~i~~~~lgai~NlVmefs~~kskfl-~~ngId~l~s~~~~~~~n~r~~~~~~Lr~l~f~~de  494 (678)
T KOG1293|consen  418 NDVAQPLVQLLMDP--EIMIMGITLGAICNLVMEFSNLKSKFL-RNNGIDILESMLTDPDFNSRANSLWVLRHLMFNCDE  494 (678)
T ss_pred             chhHHHHHHHhhCc--chhHHHHHHHHHHHHHhhcccHHHHHH-HcCcHHHHHHHhcCCCchHHHHHHHHHHHHHhcchH
Confidence            35777888888654  44677889999999986 455666677 689999999999999999999999999999999865


Q ss_pred             HHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          270 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       270 ~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +-+......=....++.+..++++.+||.+..+|+|+.+..+
T Consensus       495 ~~k~~~~~ki~a~~i~~l~nd~d~~Vqeq~fqllRNl~c~~~  536 (678)
T KOG1293|consen  495 EEKFQLLAKIPANLILDLINDPDWAVQEQCFQLLRNLTCNSR  536 (678)
T ss_pred             HHHHHHHHHhhHHHHHHHHhCCCHHHHHHHHHHHHHhhcCcH
Confidence            444444444566777889999999999999999999998853

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.10  E-value=1.5e-08  Score=98.81  Aligned_cols=257  Identities=19%  Similarity=0.163  Sum_probs=199.3

Q ss_pred             HHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249           26 LIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        26 ~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      -+.+|+.-|+. +|+..|.+|+.-+..+.....++.-..|--.-++|.|+.+|+.+ +.++...|+++|.+|+.--|...
T Consensus       168 k~kkLL~gL~~~~Des~Qleal~Elce~L~mgnEesLs~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evlP~S~  247 (1051)
T KOG0168|consen  168 KAKKLLQGLQAESDESQQLEALTELCEMLSMGNEESLSGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVLPRSS  247 (1051)
T ss_pred             HHHHHHHhccccCChHHHHHHHHHHHHHHhhcchhhhccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhccchh
Confidence            57788888874 48999999998887776544245544444456799999999876 58999999999999998888888


Q ss_pred             HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-
Q 017249          104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-  181 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-  181 (375)
                      ..++..++||.|+.-|-. .--++-+.++.+|-.++...+  ..+...|++-..+..|+--+..+++.|+.+..|+|.. 
T Consensus       248 a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iSR~H~--~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi  325 (1051)
T KOG0168|consen  248 AIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKISRRHP--KAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSI  325 (1051)
T ss_pred             heeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcc--HHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            999999999999986644 467888999999999987543  5667889999999999988899999999999999965 


Q ss_pred             -CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh----CChhhhHHHhhccCcHHHHHHHhccC----ChHH
Q 017249          182 -KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS----SSEEGRIAITNSDGGILTLVETVEDG----SLVS  252 (375)
Q Consensus       182 -~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~----~~~~~~~~~~~~~g~v~~Lv~lL~~~----~~~~  252 (375)
                       ++.-..+++  .+|.|..+|...  +.+..+.++-++..++    ..++--.++. ..|.+....++|.-.    +..+
T Consensus       326 ~sd~f~~v~e--alPlL~~lLs~~--D~k~ies~~ic~~ri~d~f~h~~~kLdql~-s~dLi~~~~qLlsvt~t~Ls~~~  400 (1051)
T KOG0168|consen  326 RSDEFHFVME--ALPLLTPLLSYQ--DKKPIESVCICLTRIADGFQHGPDKLDQLC-SHDLITNIQQLLSVTPTILSNGT  400 (1051)
T ss_pred             CCccchHHHH--HHHHHHHHHhhc--cchhHHHHHHHHHHHHHhcccChHHHHHHh-chhHHHHHHHHHhcCcccccccc
Confidence             344444444  789999999876  3355677776666665    3455556666 689999999888632    2445


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh
Q 017249          253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE  290 (375)
Q Consensus       253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~  290 (375)
                      ....++.|..+|.++ +.....+.+.++...|..++..
T Consensus       401 ~~~vIrmls~msS~~-pl~~~tl~k~~I~~~L~~il~g  437 (1051)
T KOG0168|consen  401 YTGVIRMLSLMSSGS-PLLFRTLLKLDIADTLKRILQG  437 (1051)
T ss_pred             hhHHHHHHHHHccCC-hHHHHHHHHhhHHHHHHHHHhc
Confidence            567788888888887 5777788889999999887763

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=4.6e-08  Score=98.77  Aligned_cols=316  Identities=15%  Similarity=0.124  Sum_probs=208.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      +.++.|+...+|+++..+..|+.+|..+...-....+..+.  ...+.+.+.+.+++..++..|++++...+...+.++.
T Consensus       118 ell~~L~q~~~S~~~~~rE~al~il~s~~~~~~~~~~~~~~--~l~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~~~~~~  195 (1075)
T KOG2171|consen  118 ELLQFLFQSTKSPNPSLRESALLILSSLPETFGNTLQPHLD--DLLRLFSQTMTDPSSPVRVAAVRALGAFAEYLENNKS  195 (1075)
T ss_pred             HHHHHHHHHhcCCCcchhHHHHHHHHhhhhhhccccchhHH--HHHHHHHHhccCCcchHHHHHHHHHHHHHHHhccchH
Confidence            56777778888999999999999999997654112222111  2345566677777766999999999998865543333


Q ss_pred             HHHH-cCChHHHHHhh----cCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccC--CHHHHHHHHHHH
Q 017249          105 KIAT-AGAIPPLVELL----KFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSG--SVQGRVDAVTAL  175 (375)
Q Consensus       105 ~i~~-~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L  175 (375)
                      .... ...+|.++..+    ..++...-..++.+|..+....+.  ++.+  ...+..-+.+..+.  +..++..|+..|
T Consensus       196 ~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk~l~~~l--~~ii~~~l~Ia~n~~l~~~~R~~ALe~i  273 (1075)
T KOG2171|consen  196 EVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPKLLRPHL--SQIIQFSLEIAKNKELENSIRHLALEFL  273 (1075)
T ss_pred             HHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchHHHHHHH--HHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            3333 23455555554    455666677888888888776542  3333  24566666666655  467899999999


Q ss_pred             HHhccCCCCchhh---hhcCCcHHHHHHhhhcccc--------------hHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249          176 HYLSTCKENSSPI---LDATAVPPLINLLKDCKKY--------------SKFAEKATALLEILSSSEEGRIAITNSDGGI  238 (375)
Q Consensus       176 ~~L~~~~~~~~~i---~~~g~i~~Lv~ll~~~~~~--------------~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  238 (375)
                      ..++.......+.   .-...++.++.++.+...+              ..-...|..+|--++.+-.+...+   .-.+
T Consensus       274 vs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~ded~~~~~~~~A~~~lDrlA~~L~g~~v~---p~~~  350 (1075)
T KOG2171|consen  274 VSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLDEDDEETPYRAAEQALDRLALHLGGKQVL---PPLF  350 (1075)
T ss_pred             HHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccccccccCcHHHHHHHHHHHHhcCChhheh---HHHH
Confidence            9998762211111   2234666677766543211              012234566666666543333221   2345


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhh
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRL  315 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~  315 (375)
                      +.+-.+|.+.+..-|..++.+|..++.++. +.... .=..+++.++..+.+++|+||..|+.++..++.+-+.   +..
T Consensus       351 ~~l~~~l~S~~w~~R~AaL~Als~i~EGc~-~~m~~-~l~~Il~~Vl~~l~DphprVr~AA~naigQ~stdl~p~iqk~~  428 (1075)
T KOG2171|consen  351 EALEAMLQSTEWKERHAALLALSVIAEGCS-DVMIG-NLPKILPIVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQKKH  428 (1075)
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHcccH-HHHHH-HHHHHHHHHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHHHHH
Confidence            566677788899999999999999998873 32221 1156888888899999999999999999999987744   333


Q ss_pred             hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          316 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       316 ~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ..-+.++|+..+-  ..++++.+..|+.+|-++...
T Consensus       429 ~e~l~~aL~~~ld--~~~~~rV~ahAa~al~nf~E~  462 (1075)
T KOG2171|consen  429 HERLPPALIALLD--STQNVRVQAHAAAALVNFSEE  462 (1075)
T ss_pred             HHhccHHHHHHhc--ccCchHHHHHHHHHHHHHHHh
Confidence            3446667777665  445589998888888777654

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.07  E-value=6.4e-08  Score=95.72  Aligned_cols=292  Identities=21%  Similarity=0.190  Sum_probs=198.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      .+.+.++.++.+.+...|.-+--++..+...+ ++. -.+    ++..+.+-|.++++.++-.|+++|.++.  +++...
T Consensus        42 ~~~~~vi~l~~s~~~~~Krl~yl~l~~~~~~~-~~~-~~l----~~n~l~kdl~~~n~~~~~lAL~~l~~i~--~~~~~~  113 (526)
T PF01602_consen   42 FLFMEVIKLISSKDLELKRLGYLYLSLYLHED-PEL-LIL----IINSLQKDLNSPNPYIRGLALRTLSNIR--TPEMAE  113 (526)
T ss_dssp             STHHHHHCTCSSSSHHHHHHHHHHHHHHTTTS-HHH-HHH----HHHHHHHHHCSSSHHHHHHHHHHHHHH---SHHHHH
T ss_pred             hHHHHHHHHhCCCCHHHHHHHHHHHHHHhhcc-hhH-HHH----HHHHHHHhhcCCCHHHHHHHHhhhhhhc--ccchhh
Confidence            45677788888889999998888888888887 442 222    3677888889999999999999999998  355554


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN  184 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~  184 (375)
                      .+     ++.+.+++.++++.+|..|+.++..+....+.  .+... .++.+.++|.+.++.++..|+.++..+ ..++.
T Consensus       114 ~l-----~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~--~~~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~~  184 (526)
T PF01602_consen  114 PL-----IPDVIKLLSDPSPYVRKKAALALLKIYRKDPD--LVEDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCNDD  184 (526)
T ss_dssp             HH-----HHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHC--CHHGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTHH
T ss_pred             HH-----HHHHHHHhcCCchHHHHHHHHHHHHHhccCHH--HHHHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCcc
Confidence            44     67899999999999999999999999875332  22222 689999999999999999999999999 21111


Q ss_pred             chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249          185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  264 (375)
                      ...-.-...++.|.+++...  ++-.+...+++|..++........-   ...++.+..++.+.++.+.-.++.++..+.
T Consensus       185 ~~~~~~~~~~~~L~~~l~~~--~~~~q~~il~~l~~~~~~~~~~~~~---~~~i~~l~~~l~s~~~~V~~e~~~~i~~l~  259 (526)
T PF01602_consen  185 SYKSLIPKLIRILCQLLSDP--DPWLQIKILRLLRRYAPMEPEDADK---NRIIEPLLNLLQSSSPSVVYEAIRLIIKLS  259 (526)
T ss_dssp             HHTTHHHHHHHHHHHHHTCC--SHHHHHHHHHHHTTSTSSSHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             hhhhhHHHHHHHhhhccccc--chHHHHHHHHHHHhcccCChhhhhH---HHHHHHHHHHhhccccHHHHHHHHHHHHhh
Confidence            10001112334444444343  3345556777777776543322210   346677777777777888888888888776


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 017249          265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRL  344 (375)
Q Consensus       265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~  344 (375)
                      ...  .     .-..+++.|..++.+.++.++..+...|..+....+..+. ..... + ..+.  .+.+.-.+.++..+
T Consensus       260 ~~~--~-----~~~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~~~~~~~v~-~~~~~-~-~~l~--~~~d~~Ir~~~l~l  327 (526)
T PF01602_consen  260 PSP--E-----LLQKAINPLIKLLSSSDPNVRYIALDSLSQLAQSNPPAVF-NQSLI-L-FFLL--YDDDPSIRKKALDL  327 (526)
T ss_dssp             SSH--H-----HHHHHHHHHHHHHTSSSHHHHHHHHHHHHHHCCHCHHHHG-THHHH-H-HHHH--CSSSHHHHHHHHHH
T ss_pred             cch--H-----HHHhhHHHHHHHhhcccchhehhHHHHHHHhhcccchhhh-hhhhh-h-heec--CCCChhHHHHHHHH
Confidence            543  2     3456778888888888888998888888888877643333 11111 1 2232  23446677777777


Q ss_pred             HHHHHH
Q 017249          345 LQDMVQ  350 (375)
Q Consensus       345 l~~l~~  350 (375)
                      |..+..
T Consensus       328 L~~l~~  333 (526)
T PF01602_consen  328 LYKLAN  333 (526)
T ss_dssp             HHHH--
T ss_pred             Hhhccc
Confidence            777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>PF01602 Adaptin_N: Adaptin N terminal region; InterPro: IPR002553 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.04  E-value=8.2e-08  Score=94.96  Aligned_cols=289  Identities=16%  Similarity=0.197  Sum_probs=199.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..+.+-|.++++..+..|++++.++...   +....     .++.+.+++.++++.+|..|+.++..+...+++.-  
T Consensus        80 ~~n~l~kdl~~~n~~~~~lAL~~l~~i~~~---~~~~~-----l~~~v~~ll~~~~~~VRk~A~~~l~~i~~~~p~~~--  149 (526)
T PF01602_consen   80 IINSLQKDLNSPNPYIRGLALRTLSNIRTP---EMAEP-----LIPDVIKLLSDPSPYVRKKAALALLKIYRKDPDLV--  149 (526)
T ss_dssp             HHHHHHHHHCSSSHHHHHHHHHHHHHH-SH---HHHHH-----HHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCHCCH--
T ss_pred             HHHHHHHhhcCCCHHHHHHHHhhhhhhccc---chhhH-----HHHHHHHHhcCCchHHHHHHHHHHHHHhccCHHHH--
Confidence            455666777899999999999999998733   34333     37888999999999999999999999998665532  


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH-HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA-IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN  184 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~-i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~  184 (375)
                       ... .++.+.++|.+.++.++..|+.++..+ ...+ +.. -.-...+..|.+++...++-.+...+.+|..++.....
T Consensus       150 -~~~-~~~~l~~lL~d~~~~V~~~a~~~l~~i-~~~~-~~~~~~~~~~~~~L~~~l~~~~~~~q~~il~~l~~~~~~~~~  225 (526)
T PF01602_consen  150 -EDE-LIPKLKQLLSDKDPSVVSAALSLLSEI-KCND-DSYKSLIPKLIRILCQLLSDPDPWLQIKILRLLRRYAPMEPE  225 (526)
T ss_dssp             -HGG-HHHHHHHHTTHSSHHHHHHHHHHHHHH-HCTH-HHHTTHHHHHHHHHHHHHTCCSHHHHHHHHHHHTTSTSSSHH
T ss_pred             -HHH-HHHHHhhhccCCcchhHHHHHHHHHHH-ccCc-chhhhhHHHHHHHhhhcccccchHHHHHHHHHHHhcccCChh
Confidence             222 588999999999999999999999999 1111 110 11234455666666788888899999998888754322


Q ss_pred             chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249          185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  264 (375)
                      ...  ....++.+..++.+.  ...+.-.|..++..+...+.    +.  ..+++.|+.++.+.++.++..++..|..++
T Consensus       226 ~~~--~~~~i~~l~~~l~s~--~~~V~~e~~~~i~~l~~~~~----~~--~~~~~~L~~lL~s~~~nvr~~~L~~L~~l~  295 (526)
T PF01602_consen  226 DAD--KNRIIEPLLNLLQSS--SPSVVYEAIRLIIKLSPSPE----LL--QKAINPLIKLLSSSDPNVRYIALDSLSQLA  295 (526)
T ss_dssp             HHH--HHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHSSSHH----HH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHC
T ss_pred             hhh--HHHHHHHHHHHhhcc--ccHHHHHHHHHHHHhhcchH----HH--HhhHHHHHHHhhcccchhehhHHHHHHHhh
Confidence            210  034677777777765  34566778888887777666    22  367889999999888889999999999998


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          265 QSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       265 ~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                      ....    ..+ .  .....+..+. +.++.++..+..+|..++......    .+++.|...+..  .+++..+..+..
T Consensus       296 ~~~~----~~v-~--~~~~~~~~l~~~~d~~Ir~~~l~lL~~l~~~~n~~----~Il~eL~~~l~~--~~d~~~~~~~i~  362 (526)
T PF01602_consen  296 QSNP----PAV-F--NQSLILFFLLYDDDPSIRKKALDLLYKLANESNVK----EILDELLKYLSE--LSDPDFRRELIK  362 (526)
T ss_dssp             CHCH----HHH-G--THHHHHHHHHCSSSHHHHHHHHHHHHHH--HHHHH----HHHHHHHHHHHH--C--HHHHHHHHH
T ss_pred             cccc----hhh-h--hhhhhhheecCCCChhHHHHHHHHHhhcccccchh----hHHHHHHHHHHh--ccchhhhhhHHH
Confidence            7752    122 2  2233334444 788999999999999888755321    156666666531  223556666666


Q ss_pred             HHHHHHHH
Q 017249          344 LLQDMVQR  351 (375)
Q Consensus       344 ~l~~l~~~  351 (375)
                      .+..+...
T Consensus       363 ~I~~la~~  370 (526)
T PF01602_consen  363 AIGDLAEK  370 (526)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            66666543

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. Clathrin coats contain both clathrin and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors []. All AP complexes are heterotetramers composed of two large subunits (adaptins), a medium subunit (mu) and a small subunit (sigma). Each subunit has a specific function. Adaptin subunits recognise and bind to clathrin through their hinge region (clathrin box), and recruit accessory proteins that modulate AP function through their C-terminal appendage domains. By contrast, GGAs are monomers composed of four domains, which have functions similar to AP subunits: an N-terminal VHS (Vps27p/Hrs/Stam) domain, a GAT (GGA and Tom1) domain, a hinge region, and a C-terminal GAE (gamma-adaptin ear) domain. The GAE domain is similar to the AP gamma-adaptin ear domain, being responsible for the recruitment of accessory proteins that regulate clathrin-mediated endocytosis []. While clathrin mediates endocytic protein transport from ER to Golgi, coatomers (COPI, COPII) primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the N-terminal domain of various adaptins from different AP clathrin adaptor complexes (including AP1, AP2, AP3 and AP4), and from the beta and gamma subunits of various coatomer (COP) adaptors. This domain has a 2-layer alpha/alpha fold that forms a right-handed superhelix, and is a member of the ARM repeat superfamily []. The N-terminal region of the various AP adaptor proteins share strong sequence identity; by contrast, the C-terminal domains of different adaptins share similar structural folds, but have little sequence identity []. It has been proposed that the N-terminal domain interacts with another uniform component of the coated vesicles. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 1W63_C 2JKR_A 2JKT_A 2XA7_A 2VGL_B 3TJZ_E.

>KOG0168 consensus Putative ubiquitin fusion degradation protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.04  E-value=6.5e-09  Score=101.25  Aligned_cols=221  Identities=16%  Similarity=0.130  Sum_probs=176.4

Q ss_pred             HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhh
Q 017249           19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLA   96 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~   96 (375)
                      ..|-....+|.|+.+|+ ..+.++...|+++|.+++.-- |.....+++.++||.|++.|. -+..++-++++.+|-.|+
T Consensus       205 s~fpv~slvp~Lv~LL~~E~n~DIMl~AcRaltyl~evl-P~S~a~vV~~~aIPvl~~kL~~IeyiDvAEQ~LqALE~iS  283 (1051)
T KOG0168|consen  205 SGFPVKSLVPVLVALLSHEHNFDIMLLACRALTYLCEVL-PRSSAIVVDEHAIPVLLEKLLTIEYIDVAEQSLQALEKIS  283 (1051)
T ss_pred             ccccHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHhhc-cchhheeecccchHHHHHhhhhhhhhHHHHHHHHHHHHHH
Confidence            34445668999999998 568999999999999999999 888889999999999998664 467899999999999999


Q ss_pred             ccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249           97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTA  174 (375)
Q Consensus        97 ~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~  174 (375)
                      ...   -..+.+.|++...+.+|.-.+..+|..|+.+..|+|..-.  .-..+  ...+|.|..+|...+....+.++-+
T Consensus       284 R~H---~~AiL~AG~l~a~LsylDFFSi~aQR~AlaiaaN~Cksi~sd~f~~v--~ealPlL~~lLs~~D~k~ies~~ic  358 (1051)
T KOG0168|consen  284 RRH---PKAILQAGALSAVLSYLDFFSIHAQRVALAIAANCCKSIRSDEFHFV--MEALPLLTPLLSYQDKKPIESVCIC  358 (1051)
T ss_pred             hhc---cHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccchHH--HHHHHHHHHHHhhccchhHHHHHHH
Confidence            753   3577899999999999988889999999999999987633  23333  3569999999999999999999999


Q ss_pred             HHHhccC----CCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhc
Q 017249          175 LHYLSTC----KENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVE  246 (375)
Q Consensus       175 L~~L~~~----~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~  246 (375)
                      +..++..    ++--+++...|.+....+++.-...  ...+.-...+.|..+|.+ +.....+. ..++...|-.+|.
T Consensus       359 ~~ri~d~f~h~~~kLdql~s~dLi~~~~qLlsvt~t~Ls~~~~~~vIrmls~msS~~pl~~~tl~-k~~I~~~L~~il~  436 (1051)
T KOG0168|consen  359 LTRIADGFQHGPDKLDQLCSHDLITNIQQLLSVTPTILSNGTYTGVIRMLSLMSSGSPLLFRTLL-KLDIADTLKRILQ  436 (1051)
T ss_pred             HHHHHHhcccChHHHHHHhchhHHHHHHHHHhcCcccccccchhHHHHHHHHHccCChHHHHHHH-HhhHHHHHHHHHh
Confidence            9999854    2344566778999988888875421  113445567788888875 77777777 5677777777764

>KOG2160 consensus Armadillo/beta-catenin-like repeat-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.98  E-value=4.3e-08  Score=87.80  Aligned_cols=186  Identities=26%  Similarity=0.278  Sum_probs=156.3

Q ss_pred             CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHH
Q 017249           79 SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLV  157 (375)
Q Consensus        79 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~  157 (375)
                      +.+.+-++.|+.-|..++. +-++-..++..|+..+++.++++.+..+|..|+++|...+.+.+ .+..+.+.|+++.|+
T Consensus        94 s~~le~ke~ald~Le~lve-~iDnAndl~~~ggl~~ll~~l~~~~~~lR~~Aa~Vigt~~qNNP~~Qe~v~E~~~L~~Ll  172 (342)
T KOG2160|consen   94 SVDLEDKEDALDNLEELVE-DIDNANDLISLGGLVPLLGYLENSDAELRELAARVIGTAVQNNPKSQEQVIELGALSKLL  172 (342)
T ss_pred             cCCHHHHHHHHHHHHHHHH-hhhhHHhHhhccCHHHHHHHhcCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcccHHHHH
Confidence            3467889999999999998 68899999999999999999999999999999999999998865 688888999999999


Q ss_pred             HHhccCC-HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhc
Q 017249          158 QILHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNS  234 (375)
Q Consensus       158 ~lL~~~~-~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~  234 (375)
                      .++.+.+ ..++..|+.+++.|..+. .....+...++...|..++.+.+.+..++..++..+..+... ...+. ++..
T Consensus       173 ~~ls~~~~~~~r~kaL~AissLIRn~~~g~~~fl~~~G~~~L~~vl~~~~~~~~lkrK~~~Ll~~Ll~~~~s~~d-~~~~  251 (342)
T KOG2160|consen  173 KILSSDDPNTVRTKALFAISSLIRNNKPGQDEFLKLNGYQVLRDVLQSNNTSVKLKRKALFLLSLLLQEDKSDED-IASS  251 (342)
T ss_pred             HHHccCCCchHHHHHHHHHHHHHhcCcHHHHHHHhcCCHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhhhhhhh-HHHH
Confidence            9998765 466799999999999764 567777788889999999999766778888899999988764 44444 4445


Q ss_pred             cCcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249          235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  266 (375)
                      .++...+..+....+....+.++.++..+...
T Consensus       252 ~~f~~~~~~l~~~l~~~~~e~~l~~~l~~l~~  283 (342)
T KOG2160|consen  252 LGFQRVLENLISSLDFEVNEAALTALLSLLSE  283 (342)
T ss_pred             hhhhHHHHHHhhccchhhhHHHHHHHHHHHHH
Confidence            67777788888777888889999888877654

>PTZ00429 beta-adaptin; Provisional

Probab=98.97  E-value=1.1e-06  Score=88.61  Aligned_cols=261  Identities=12%  Similarity=0.074  Sum_probs=172.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .++.++..+.+.+.+.|+-.-..+.+++... ++.. .+    ++..+.+-+.++++.+|-.|+++|+.+-.  +..-..
T Consensus        69 LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~-pela-lL----aINtl~KDl~d~Np~IRaLALRtLs~Ir~--~~i~e~  140 (746)
T PTZ00429         69 LFVDVVKLAPSTDLELKKLVYLYVLSTARLQ-PEKA-LL----AVNTFLQDTTNSSPVVRALAVRTMMCIRV--SSVLEY  140 (746)
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHcccC-hHHH-HH----HHHHHHHHcCCCCHHHHHHHHHHHHcCCc--HHHHHH
Confidence            3444445555555666655555565555544 2211 11    25666777778888888888888887764  323332


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS  185 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~  185 (375)
                           .++.+.+.+.+.++.+|..|+-++.++...++  ..+...+.++.|.++|.+.++.++.+|+.+|..+.......
T Consensus       141 -----l~~~lkk~L~D~~pYVRKtAalai~Kly~~~p--elv~~~~~~~~L~~LL~D~dp~Vv~nAl~aL~eI~~~~~~~  213 (746)
T PTZ00429        141 -----TLEPLRRAVADPDPYVRKTAAMGLGKLFHDDM--QLFYQQDFKKDLVELLNDNNPVVASNAAAIVCEVNDYGSEK  213 (746)
T ss_pred             -----HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCc--ccccccchHHHHHHHhcCCCccHHHHHHHHHHHHHHhCchh
Confidence                 25577888889999999999999999976444  33445678899999999999999999999999997553322


Q ss_pred             hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      . -...+.+..|+..+.+.+++..+  ..+.+|...  .|......   ...+..+...|.+.++.+.-.|+.++.++..
T Consensus       214 l-~l~~~~~~~Ll~~L~e~~EW~Qi--~IL~lL~~y--~P~~~~e~---~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~  285 (746)
T PTZ00429        214 I-ESSNEWVNRLVYHLPECNEWGQL--YILELLAAQ--RPSDKESA---ETLLTRVLPRMSHQNPAVVMGAIKVVANLAS  285 (746)
T ss_pred             h-HHHHHHHHHHHHHhhcCChHHHH--HHHHHHHhc--CCCCcHHH---HHHHHHHHHHhcCCCHHHHHHHHHHHHHhcC
Confidence            1 12345667777777766555443  345555332  23322222   2467788888999999999999999999986


Q ss_pred             cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          266 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       266 ~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      ..+++....+. .....+|+.+ .++++++|.-+...+..+....+
T Consensus       286 ~~~~~~~~~~~-~rl~~pLv~L-~ss~~eiqyvaLr~I~~i~~~~P  329 (746)
T PTZ00429        286 RCSQELIERCT-VRVNTALLTL-SRRDAETQYIVCKNIHALLVIFP  329 (746)
T ss_pred             cCCHHHHHHHH-HHHHHHHHHh-hCCCccHHHHHHHHHHHHHHHCH
Confidence            54333222211 1233666666 45778999999987777766554

>KOG2171 consensus Karyopherin (importin) beta 3 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.92  E-value=3.2e-06  Score=85.87  Aligned_cols=312  Identities=16%  Similarity=0.155  Sum_probs=204.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH---HHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR---SEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~---~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .+.+.+.+.+++..++..|++++..++... +.+.   +.+...  +++..+-+.+..++.+.-..++.+|..++...+.
T Consensus       161 ~~lf~q~~~d~s~~vr~~a~rA~~a~~~~~-~~~~~~~~~~~~llP~~l~vl~~~i~~~d~~~a~~~l~~l~El~e~~pk  239 (1075)
T KOG2171|consen  161 LRLFSQTMTDPSSPVRVAAVRALGAFAEYL-ENNKSEVDKFRDLLPSLLNVLQEVIQDGDDDAAKSALEALIELLESEPK  239 (1075)
T ss_pred             HHHHHHhccCCcchHHHHHHHHHHHHHHHh-ccchHHHHHHHHHhHHHHHHhHhhhhccchHHHHHHHHHHHHHHhhchH
Confidence            334444555555459999999999998776 3233   333322  3344444555667778888999999999876665


Q ss_pred             hHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccC-------------
Q 017249          102 NKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSG-------------  163 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~-------------  163 (375)
                      .-..... .++..-+.+.++.  +..+|..|+.+|..++...+.....   .....++.++.++...             
T Consensus       240 ~l~~~l~-~ii~~~l~Ia~n~~l~~~~R~~ALe~ivs~~e~Ap~~~k~~~~~~~~lv~~~l~~mte~~~D~ew~~~d~~d  318 (1075)
T KOG2171|consen  240 LLRPHLS-QIIQFSLEIAKNKELENSIRHLALEFLVSLSEYAPAMCKKLALLGHTLVPVLLAMMTEEEDDDEWSNEDDLD  318 (1075)
T ss_pred             HHHHHHH-HHHHHHHHHhhcccccHHHHHHHHHHHHHHHHhhHHHhhhchhhhccHHHHHHHhcCCcccchhhccccccc
Confidence            4333322 1344445555554  7889999999999999873321111   1233455555554221             


Q ss_pred             --C-HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHH
Q 017249          164 --S-VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGIL  239 (375)
Q Consensus       164 --~-~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~  239 (375)
                        + ......|..+|-.|+.+=..+.  +-.-.++.+-.++.+.+ + .-+.+++.+|+.++. +++.-...+  ..+++
T Consensus       319 ed~~~~~~~~A~~~lDrlA~~L~g~~--v~p~~~~~l~~~l~S~~-w-~~R~AaL~Als~i~EGc~~~m~~~l--~~Il~  392 (1075)
T KOG2171|consen  319 EDDEETPYRAAEQALDRLALHLGGKQ--VLPPLFEALEAMLQSTE-W-KERHAALLALSVIAEGCSDVMIGNL--PKILP  392 (1075)
T ss_pred             cccccCcHHHHHHHHHHHHhcCChhh--ehHHHHHHHHHHhcCCC-H-HHHHHHHHHHHHHHcccHHHHHHHH--HHHHH
Confidence              0 1235566777777765411111  11124556666666653 3 557888888888875 344444444  36778


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCChhhhhh--
Q 017249          240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQEKRLS--  316 (375)
Q Consensus       240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~~~~--  316 (375)
                      .++..|.++.+.+|..|+.++.-++.+=.++.. .-...-+.+.|+..+.+ ++++++.+|+.+|-++.+..+...+.  
T Consensus       393 ~Vl~~l~DphprVr~AA~naigQ~stdl~p~iq-k~~~e~l~~aL~~~ld~~~~~rV~ahAa~al~nf~E~~~~~~l~pY  471 (1075)
T KOG2171|consen  393 IVLNGLNDPHPRVRYAALNAIGQMSTDLQPEIQ-KKHHERLPPALIALLDSTQNVRVQAHAAAALVNFSEECDKSILEPY  471 (1075)
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHhhhhhhcHHHH-HHHHHhccHHHHHHhcccCchHHHHHHHHHHHHHHHhCcHHHHHHH
Confidence            888889999999999999999999987655432 23345677788887775 57999999999999999888664443  


Q ss_pred             -hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          317 -SSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       317 -~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                       .+++++++..|.  .++++..++.+..++...-
T Consensus       472 Ld~lm~~~l~~L~--~~~~~~v~e~vvtaIasvA  503 (1075)
T KOG2171|consen  472 LDGLMEKKLLLLL--QSSKPYVQEQAVTAIASVA  503 (1075)
T ss_pred             HHHHHHHHHHHHh--cCCchhHHHHHHHHHHHHH
Confidence             567776666665  6788999999988887664

>KOG2973 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.85  E-value=1.6e-06  Score=75.94  Aligned_cols=273  Identities=16%  Similarity=0.178  Sum_probs=189.5

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFA-AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      +..+++++.+.+|.++..|+..+..+....   .+.... +.-.++.+.+++....+  ...|+.+|.|++. ++..|..
T Consensus         5 l~elv~ll~~~sP~v~~~AV~~l~~lt~~~---~~~~~~~~~~~lk~l~qL~~~~~~--~~~a~~alVnlsq-~~~l~~~   78 (353)
T KOG2973|consen    5 LVELVELLHSLSPPVRKAAVEHLLGLTGRG---LQSLSKYSEALLKDLTQLLKDLDP--AEPAATALVNLSQ-KEELRKK   78 (353)
T ss_pred             HHHHHHHhccCChHHHHHHHHHHhhccccc---hhhhccchhhhHHHHHHHccCccc--ccHHHHHHHHHHh-hHHHHHH
Confidence            467899999999999999999888887653   122111 12457888888887665  7788999999998 5778888


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH---h----cCChHHHHHHhccC-C-HHHHHHHHHHHH
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA---A----SGAAPLLVQILHSG-S-VQGRVDAVTALH  176 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~---~----~~~l~~L~~lL~~~-~-~~~~~~a~~~L~  176 (375)
                      +... .+..++..+.++....-...+.+|.||+..+.....+.   .    .|........++.+ + ..-..+.+-.+.
T Consensus        79 ll~~-~~k~l~~~~~~p~~~lad~~cmlL~NLs~~~~~~~~ll~~~~~~~~~~lm~l~~~~~d~~~n~~a~f~ylA~vf~  157 (353)
T KOG2973|consen   79 LLQD-LLKVLMDMLTDPQSPLADLICMLLSNLSRDDDEVAALLTNLTEKKDSGLMRLARAFCDKSYNAYAEFHYLAPVFA  157 (353)
T ss_pred             HHHH-HHHHHHHHhcCcccchHHHHHHHHHHhccCchHHHHHHHhcccccccchHHHHHHHhCcccccccchhHHHHHHH
Confidence            8777 78888888888755666788899999998877543332   2    34444444455443 2 133667778899


Q ss_pred             HhccCCCCchhhhhcCCcH--HHHHHhhhcccchHH-HHHHHHHHHHhhCChhhhHHHhhcc-CcHHHHH----------
Q 017249          177 YLSTCKENSSPILDATAVP--PLINLLKDCKKYSKF-AEKATALLEILSSSEEGRIAITNSD-GGILTLV----------  242 (375)
Q Consensus       177 ~L~~~~~~~~~i~~~g~i~--~Lv~ll~~~~~~~~~-~~~a~~~L~~l~~~~~~~~~~~~~~-g~v~~Lv----------  242 (375)
                      ||+.....+..+.....++  .++.+ .+.  +..+ +....+.|.|.|........++.+. ...+.|+          
T Consensus       158 nls~~~~gR~l~~~~k~~p~~kll~f-t~~--~s~vRr~GvagtlkN~cFd~~~h~~lL~e~~~lLp~iLlPlagpee~s  234 (353)
T KOG2973|consen  158 NLSQFEAGRKLLLEPKRFPDQKLLPF-TSE--DSQVRRGGVAGTLKNCCFDAKLHEVLLDESINLLPAILLPLAGPEELS  234 (353)
T ss_pred             HHhhhhhhhhHhcchhhhhHhhhhcc-ccc--chhhhccchHHHHHhhhccchhHHHHhcchHHHHHHHHhhcCCccccC
Confidence            9998877777766654322  22222 221  2233 3456788999999888887777421 1223222          


Q ss_pred             -----------HHhc-----cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHH
Q 017249          243 -----------ETVE-----DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDL  305 (375)
Q Consensus       243 -----------~lL~-----~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~  305 (375)
                                 ++|.     .+++.++..-+.+|.-||...  .+|+.+.+.|+.+.|-.+-. ..++++++.+-.+...
T Consensus       235 EEdm~~LP~eLQyLp~dKeRepdpdIrk~llEai~lLcaT~--~GRe~lR~kgvYpilRElhk~e~ded~~~ace~vvq~  312 (353)
T KOG2973|consen  235 EEDMAKLPVELQYLPEDKEREPDPDIRKMLLEALLLLCATR--AGREVLRSKGVYPILRELHKWEEDEDIREACEQVVQM  312 (353)
T ss_pred             HHHHhcCCHhhhcCCccccCCCChHHHHHHHHHHHHHHhhh--HhHHHHHhcCchHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence                       2231     246789999999999999876  66888888888887777655 5689999999888888


Q ss_pred             hhcCCh
Q 017249          306 LRDTPQ  311 (375)
Q Consensus       306 l~~~~~  311 (375)
                      +-+..+
T Consensus       313 Lv~~e~  318 (353)
T KOG2973|consen  313 LVRLEP  318 (353)
T ss_pred             HHhccc
Confidence            877554

>PTZ00429 beta-adaptin; Provisional

Probab=98.80  E-value=8.8e-06  Score=82.15  Aligned_cols=308  Identities=13%  Similarity=0.064  Sum_probs=208.0

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHH-HhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKV-VKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l-~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      +.|-+..|-..|++.+...+..+++.+... +.+.  +.-      .+.+.+++++.+++.++++-..-.|.+++..+++
T Consensus        30 ~kge~~ELr~~L~s~~~~~kk~alKkvIa~mt~G~--DvS------~LF~dVvk~~~S~d~elKKLvYLYL~~ya~~~pe  101 (746)
T PTZ00429         30 RRGEGAELQNDLNGTDSYRKKAAVKRIIANMTMGR--DVS------YLFVDVVKLAPSTDLELKKLVYLYVLSTARLQPE  101 (746)
T ss_pred             ccchHHHHHHHHHCCCHHHHHHHHHHHHHHHHCCC--Cch------HHHHHHHHHhCCCCHHHHHHHHHHHHHHcccChH
Confidence            345567777888888888888888855444 4444  222      2466778899999999999999999999876555


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      .--..     +..|.+=+.++++.+|-.|++++.++-..     . ...-.++.+.+.+.+.++.+++.|+.++..+-..
T Consensus       102 lalLa-----INtl~KDl~d~Np~IRaLALRtLs~Ir~~-----~-i~e~l~~~lkk~L~D~~pYVRKtAalai~Kly~~  170 (746)
T PTZ00429        102 KALLA-----VNTFLQDTTNSSPVVRALAVRTMMCIRVS-----S-VLEYTLEPLRRAVADPDPYVRKTAAMGLGKLFHD  170 (746)
T ss_pred             HHHHH-----HHHHHHHcCCCCHHHHHHHHHHHHcCCcH-----H-HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Confidence            43332     45777888889999999999988887331     1 1233466778888999999999999999998654


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      ++  ..+...+.++.|.+++.+.  ++.+..+|+.+|..+.......-.+  ..+.+..|+..|...++..+-..+.+|.
T Consensus       171 ~p--elv~~~~~~~~L~~LL~D~--dp~Vv~nAl~aL~eI~~~~~~~l~l--~~~~~~~Ll~~L~e~~EW~Qi~IL~lL~  244 (746)
T PTZ00429        171 DM--QLFYQQDFKKDLVELLNDN--NPVVASNAAAIVCEVNDYGSEKIES--SNEWVNRLVYHLPECNEWGQLYILELLA  244 (746)
T ss_pred             Cc--ccccccchHHHHHHHhcCC--CccHHHHHHHHHHHHHHhCchhhHH--HHHHHHHHHHHhhcCChHHHHHHHHHHH
Confidence            33  2334567888999988765  4568888999999887543222222  2466778888888778888888888886


Q ss_pred             HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhh---hhHHHHHHHHhhcCCChHHHH
Q 017249          262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSS---SVLEKIVYDIAARVDGADKAA  338 (375)
Q Consensus       262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~---g~~~~l~~~l~~~~~g~~~~~  338 (375)
                      .....+..+      ...++..+...+.+.++.|.-.|+.++-++........+..   -+..+++.++    .+.+..+
T Consensus       245 ~y~P~~~~e------~~~il~~l~~~Lq~~N~AVVl~Aik~il~l~~~~~~~~~~~~~~rl~~pLv~L~----ss~~eiq  314 (746)
T PTZ00429        245 AQRPSDKES------AETLLTRVLPRMSHQNPAVVMGAIKVVANLASRCSQELIERCTVRVNTALLTLS----RRDAETQ  314 (746)
T ss_pred             hcCCCCcHH------HHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHHHHHhh----CCCccHH
Confidence            543322111      13566777777888899999999998888876532222211   1334555432    2346677


Q ss_pred             HHHHHHHHHHHHH---HHHHhHHHHHHHhh
Q 017249          339 ETAKRLLQDMVQR---SMELSMTRIQQRAA  365 (375)
Q Consensus       339 ~~a~~~l~~l~~~---s~~~~~~~~~~~~~  365 (375)
                      =-+-..+..+.+.   -...++..|+-|.+
T Consensus       315 yvaLr~I~~i~~~~P~lf~~~~~~Ff~~~~  344 (746)
T PTZ00429        315 YIVCKNIHALLVIFPNLLRTNLDSFYVRYS  344 (746)
T ss_pred             HHHHHHHHHHHHHCHHHHHHHHHhhhcccC
Confidence            6666666666544   22334555544443

>KOG0946 consensus ER-Golgi vesicle-tethering protein p115 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.69  E-value=3.2e-05  Score=75.71  Aligned_cols=284  Identities=14%  Similarity=0.078  Sum_probs=205.3

Q ss_pred             HhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCCh----------------hhHHHHHhc-CChHHHHHhhCCCCHHH
Q 017249           24 QALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSL----------------KTRSEFAAA-GVVQPLVLMLVSPNLDA   84 (375)
Q Consensus        24 ~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~----------------~~~~~~~~~-g~v~~Lv~~L~~~~~~~   84 (375)
                      ..++++|+.-|+  ..|++....++.++..+..++ +                ...+.|++. +.|..|+..+...|..+
T Consensus        60 a~Gmk~li~vL~~D~~D~E~ik~~LdTl~il~~~d-d~~~v~dds~qsdd~g~~iae~fik~qd~I~lll~~~e~~DF~V  138 (970)
T KOG0946|consen   60 AQGMKPLIQVLQRDYMDPEIIKYALDTLLILTSHD-DSPEVMDDSTQSDDLGLWIAEQFIKNQDNITLLLQSLEEFDFHV  138 (970)
T ss_pred             HcccHHHHHHHhhccCCHHHHHHHHHHHHHHHhcC-cchhhcccchhhhHHHHHHHHHHHcCchhHHHHHHHHHhhchhh
Confidence            446889999998  458999999999999998766 2                122345544 78999999999999999


Q ss_pred             HHHHHHHHHHhhc-cChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChh-HHHhcCChHHHHHHhc
Q 017249           85 IESSLLALLNLAV-RNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP-AIAASGAAPLLVQILH  161 (375)
Q Consensus        85 ~~~a~~~L~~L~~-~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~-~i~~~~~l~~L~~lL~  161 (375)
                      |..++..|.++-. ...+.+..+.. .-+|..|+.+|.+....+|-.++..|..|..+..... .++-.+++..|..++.
T Consensus       139 R~~aIqLlsalls~r~~e~q~~ll~~P~gIS~lmdlL~DsrE~IRNe~iLlL~eL~k~n~~IQKlVAFENaFerLfsIIe  218 (970)
T KOG0946|consen  139 RLYAIQLLSALLSCRPTELQDALLVSPMGISKLMDLLRDSREPIRNEAILLLSELVKDNSSIQKLVAFENAFERLFSIIE  218 (970)
T ss_pred             hhHHHHHHHHHHhcCCHHHHHHHHHCchhHHHHHHHHhhhhhhhchhHHHHHHHHHccCchHHHHHHHHHHHHHHHHHHH
Confidence            9999999998664 34566777666 7899999999999999999999999999999877644 4456789999999997


Q ss_pred             cC---C-HHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcc-------cch--HH--HHHHHHHHHHhhC-C
Q 017249          162 SG---S-VQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCK-------KYS--KF--AEKATALLEILSS-S  224 (375)
Q Consensus       162 ~~---~-~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~-------~~~--~~--~~~a~~~L~~l~~-~  224 (375)
                      .+   + .-+...|+..|.||-.+ ..|...+.+.+.+|.|.++|....       .|.  .+  ...++.+++.+.. +
T Consensus       219 eEGg~dGgIVveDCL~ll~NLLK~N~SNQ~~FrE~~~i~rL~klL~~f~~~d~Ev~~W~~Qrv~Nv~~~Lqivr~lVsP~  298 (970)
T KOG0946|consen  219 EEGGLDGGIVVEDCLILLNNLLKNNISNQNFFREGSYIPRLLKLLSVFEFGDGEVFGWSTQRVQNVIEALQIVRSLVSPG  298 (970)
T ss_pred             hcCCCCCcchHHHHHHHHHHHHhhCcchhhHHhccccHHHHHhhcCcccccCcccccccHHHHHHHHHHHHHHHHhcCCC
Confidence            54   2 35788999999999976 478888899999999998886421       111  11  1234555555542 1


Q ss_pred             ------hhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC----------ChHHHHH
Q 017249          225 ------EEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEG----------AIPGLLR  286 (375)
Q Consensus       225 ------~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----------~v~~L~~  286 (375)
                            +.+++.+. ..+++..|..++.++  ...++..++.+++++..++ ...+..+.+..          ++-.++.
T Consensus       299 Nt~~~~~q~qk~l~-ss~ll~~Lc~il~~~~vp~dIltesiitvAevVRgn-~~nQ~~F~~v~~p~~~~Pr~sivvllms  376 (970)
T KOG0946|consen  299 NTSSITHQNQKALV-SSHLLDVLCTILMHPGVPADILTESIITVAEVVRGN-ARNQDEFADVTAPSIPNPRPSIVVLLMS  376 (970)
T ss_pred             CcHHHHHHHHHHHH-HcchHHHHHHHHcCCCCcHhHHHHHHHHHHHHHHhc-hHHHHHHhhccCCCCCCCccchhHHHHH
Confidence                  23445555 678899999888765  4678899999999998887 45566665421          1122334


Q ss_pred             HhhhCC-HHHHHHHHHHHHHhhcCC
Q 017249          287 LTVEGT-FEAQERARTLLDLLRDTP  310 (375)
Q Consensus       287 ll~~~~-~~~~~~A~~~L~~l~~~~  310 (375)
                      +..+.. +..|-+...++..+--.+
T Consensus       377 m~ne~q~~~lRcAv~ycf~s~l~dN  401 (970)
T KOG0946|consen  377 MFNEKQPFSLRCAVLYCFRSYLYDN  401 (970)
T ss_pred             HHhccCCchHHHHHHHHHHHHHhcc
Confidence            444444 444444445777665444

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.68  E-value=4.2e-07  Score=69.84  Aligned_cols=135  Identities=16%  Similarity=0.157  Sum_probs=115.9

Q ss_pred             HhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249           21 QRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        21 ~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~   99 (375)
                      +...+.+..||...+ ..+.+.|.....-|.|++.++  -+-..+.+.++++.++..|+.++..+++.++..|+|+|- +
T Consensus        12 i~Rl~Ylq~LV~efq~tt~~eakeqv~ANLANFAYDP--~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~-d   88 (173)
T KOG4646|consen   12 IDRLEYLQHLVDEFQTTTNIEAKEQVTANLANFAYDP--INYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCL-D   88 (173)
T ss_pred             CcHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccCc--chHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhcc-C
Confidence            556788999998887 678899999999999999998  888999999999999999999999999999999999999 6


Q ss_pred             hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHH
Q 017249          100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQ  158 (375)
Q Consensus       100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~  158 (375)
                      +.+...|.+.+++|.++..+.++...+...++.++..|+.... .++.+....++..+.+
T Consensus        89 ~~n~~~I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~~v~r  148 (173)
T KOG4646|consen   89 KTNAKFIREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVRTVQR  148 (173)
T ss_pred             hHHHHHHHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHHHHHH
Confidence            8899999999999999999999999888899999998887654 3555554444444433

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.66  E-value=3.1e-05  Score=72.23  Aligned_cols=319  Identities=15%  Similarity=0.152  Sum_probs=208.3

Q ss_pred             HHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHh
Q 017249           18 AWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNL   95 (375)
Q Consensus        18 ~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L   95 (375)
                      +....-...++.+..++-+++.+++..+.++++.+..+.  .....+.+.+.--.++.-|..+  ...-+++|++.++.+
T Consensus        18 ~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~d~--~~l~~~~~l~id~~ii~SL~~~~~~~~ER~QALkliR~~   95 (371)
T PF14664_consen   18 KYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLISDE--ESLQILLKLHIDIFIIRSLDRDNKNDVEREQALKLIRAF   95 (371)
T ss_pred             hhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCchhhHhhhcccCCChHHHHHHHHHHHHH
Confidence            334444556666666565666999999999999999887  7788888888666666666543  345688999999988


Q ss_pred             hccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      ..-. .. ......|++..++.+.++.++..+..++.+|+.++..++  ..+...||+..|++.+.++........+.++
T Consensus        96 l~~~-~~-~~~~~~~vvralvaiae~~~D~lr~~cletL~El~l~~P--~lv~~~gG~~~L~~~l~d~~~~~~~~l~~~l  171 (371)
T PF14664_consen   96 LEIK-KG-PKEIPRGVVRALVAIAEHEDDRLRRICLETLCELALLNP--ELVAECGGIRVLLRALIDGSFSISESLLDTL  171 (371)
T ss_pred             HHhc-CC-cccCCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhCH--HHHHHcCCHHHHHHHHHhccHhHHHHHHHHH
Confidence            7531 11 122356788999999999999999999999999988543  5667889999999999887777888899999


Q ss_pred             HHhccCCCCchhhhhcCCcHHHHHHhhhc-----ccch--HHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhcc
Q 017249          176 HYLSTCKENSSPILDATAVPPLINLLKDC-----KKYS--KFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVED  247 (375)
Q Consensus       176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-----~~~~--~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~  247 (375)
                      ..+-..+..+..+...--++.++.-+.+.     ....  .....+..++..+-.+=.+--.+..+ ..++..|+..|..
T Consensus       172 L~lLd~p~tR~yl~~~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~GLl~l~~~~~~~lksLv~~L~~  251 (371)
T PF14664_consen  172 LYLLDSPRTRKYLRPGFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPGLLYLSMNDFRGLKSLVDSLRL  251 (371)
T ss_pred             HHHhCCcchhhhhcCCccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCceeeeecCCchHHHHHHHHHcC
Confidence            99999988887766544455555555443     1111  13344455555444433332222222 2688999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCcHHH------HHHHHHcCCh---HHHHHHhh-----------hCCHHHHHHHHHHHHHhh
Q 017249          248 GSLVSTQHAVGALLSLCQSCRDKY------RQLILKEGAI---PGLLRLTV-----------EGTFEAQERARTLLDLLR  307 (375)
Q Consensus       248 ~~~~~~~~a~~~L~~l~~~~~~~~------~~~l~~~g~v---~~L~~ll~-----------~~~~~~~~~A~~~L~~l~  307 (375)
                      +++.+++..+..+..+-.-..+.-      ...+...|-+   ..+..-..           ....-+..+-+-+|.   
T Consensus       252 p~~~ir~~Ildll~dllrik~p~w~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~~~~~~~~~l~~~y~aLll~---  328 (371)
T PF14664_consen  252 PNPEIRKAILDLLFDLLRIKPPSWTESFLAGRRLTTYGRFQDTWNLSSGFAEAKSILPHRSSKRPNLVNHYLALLLA---  328 (371)
T ss_pred             CCHHHHHHHHHHHHHHHCCCCCCcccchhhcccccccccccchhhhcccccccccccCccccccccHHHHHHHHHHH---
Confidence            999999999999988765332210      1111112221   11110000           001111111222222   


Q ss_pred             cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                           -.++.|.+++|+..+.  ...++....||.-+|..+.+.+
T Consensus       329 -----ili~~gL~~~L~~li~--~~~d~~l~~KAtlLL~elL~la  366 (371)
T PF14664_consen  329 -----ILIEAGLLEALVELIE--SSEDSSLSRKATLLLGELLHLA  366 (371)
T ss_pred             -----HHHHcChHHHHHHHHh--cCCCchHHHHHHHHHHHHHHHH
Confidence                 2567789999998876  3324788899999998887543

>KOG2759 consensus Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.63  E-value=3.7e-05  Score=70.34  Aligned_cols=316  Identities=14%  Similarity=0.088  Sum_probs=215.1

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh-------cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249           25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAA-------AGVVQPLVLMLVSPNLDAIESSLLALLNLA   96 (375)
Q Consensus        25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-------~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~   96 (375)
                      ..+..++.+++ ...++...-.+..+..+...+  ..+..+..       .-.....+.+|...+.-+...+.+++..++
T Consensus        65 ~~v~~fi~LlS~~~kdd~v~yvL~li~DmLs~d--~sr~~lf~~~a~~~k~~~~~~fl~ll~r~d~~iv~~~~~Ils~la  142 (442)
T KOG2759|consen   65 QYVKTFINLLSHIDKDDTVQYVLTLIDDMLSED--RSRVDLFHDYAHKLKRTEWLSFLNLLNRQDTFIVEMSFRILSKLA  142 (442)
T ss_pred             HHHHHHHHHhchhhhHHHHHHHHHHHHHHHhhC--chHHHHHHHHHHhhhccchHHHHHHHhcCChHHHHHHHHHHHHHH
Confidence            56788888887 456667777888888888777  34443321       123677899999999888888999999988


Q ss_pred             ccChhhHHHHHHcC-ChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHHHHHHH
Q 017249           97 VRNERNKVKIATAG-AIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQGRVDAV  172 (375)
Q Consensus        97 ~~~~~~r~~i~~~g-~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~  172 (375)
                      .... ++....+.. ....|-..+.+ .+.+....+++||-.+...++.+..+....++..++..+.+.  +..+++..+
T Consensus       143 ~~g~-~~~~~~e~~~~~~~l~~~l~~~~~~~~~~~~~rcLQ~ll~~~eyR~~~v~adg~~~l~~~l~s~~~~~QlQYqsi  221 (442)
T KOG2759|consen  143 CFGN-CKMELSELDVYKGFLKEQLQSSTNNDYIQFAARCLQTLLRVDEYRYAFVIADGVSLLIRILASTKCGFQLQYQSI  221 (442)
T ss_pred             Hhcc-ccccchHHHHHHHHHHHHHhccCCCchHHHHHHHHHHHhcCcchhheeeecCcchhhHHHHhccCcchhHHHHHH
Confidence            6322 221111111 12234444544 467777889999999999999999999888999999998433  578899999


Q ss_pred             HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-------hhhHHHhhccCcHHHHHHHh
Q 017249          173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-------EGRIAITNSDGGILTLVETV  245 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-------~~~~~~~~~~g~v~~Lv~lL  245 (375)
                      .++|-|+.++...+.+...+.++.|..+++++. .+++.+-++.++.|+....       +...+++.  +.++.-++.|
T Consensus       222 fciWlLtFn~~~ae~~~~~~li~~L~~Ivk~~~-KEKV~Rivlai~~Nll~k~~~~~~~k~~~~~mv~--~~v~k~l~~L  298 (442)
T KOG2759|consen  222 FCIWLLTFNPHAAEKLKRFDLIQDLSDIVKEST-KEKVTRIVLAIFRNLLDKGPDRETKKDIASQMVL--CKVLKTLQSL  298 (442)
T ss_pred             HHHHHhhcCHHHHHHHhhccHHHHHHHHHHHHH-HHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHh--cCchHHHHHH
Confidence            999999999888888877899999999999876 4467788999999998765       33345552  4555555555


Q ss_pred             cc---CChHHHHH-------HHHHHHHhccc--------------Cc--------HHHHHHHHHc--CChHHHHHHhhhC
Q 017249          246 ED---GSLVSTQH-------AVGALLSLCQS--------------CR--------DKYRQLILKE--GAIPGLLRLTVEG  291 (375)
Q Consensus       246 ~~---~~~~~~~~-------a~~~L~~l~~~--------------~~--------~~~~~~l~~~--g~v~~L~~ll~~~  291 (375)
                      ..   .++.+...       --...-.|+..              ++        .++...+-+.  .++..|+.+++..
T Consensus       299 ~~rkysDEDL~~di~~L~e~L~~svq~LsSFDeY~sEl~sG~L~WSP~Hk~e~FW~eNa~rlnennyellkiL~~lLe~s  378 (442)
T KOG2759|consen  299 EERKYSDEDLVDDIEFLTEKLKNSVQDLSSFDEYKSELRSGRLEWSPVHKSEKFWRENADRLNENNYELLKILIKLLETS  378 (442)
T ss_pred             HhcCCCcHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHhCCcCCCccccccchHHHhHHHHhhccHHHHHHHHHHHhcC
Confidence            42   22222211       11111112211              11        1234444443  3788899988854


Q ss_pred             -CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          292 -TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       292 -~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                       +|.+---|+.=+...-++.|+   .+.+.|+=+.++..|. +.|  ++.+=.|-.+++.+.
T Consensus       379 ~Dp~iL~VAc~DIge~Vr~yP~gk~vv~k~ggKe~vM~Lln-h~d--~~Vry~ALlavQ~lm  437 (442)
T KOG2759|consen  379 NDPIILCVACHDIGEYVRHYPEGKAVVEKYGGKERVMNLLN-HED--PEVRYHALLAVQKLM  437 (442)
T ss_pred             CCCceeehhhhhHHHHHHhCchHhHHHHHhchHHHHHHHhc-CCC--chHHHHHHHHHHHHH
Confidence             588877788866666665544   4567888888988774 333  888888888777664

>KOG4646 consensus Uncharacterized conserved protein, contains ARM repeats [Function unknown]

Probab=98.61  E-value=3.3e-07  Score=70.46  Aligned_cols=127  Identities=22%  Similarity=0.219  Sum_probs=109.5

Q ss_pred             CChHHHHH-hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249           68 GVVQPLVL-MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        68 g~v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      +.+..||. +-...+.+.+++...-|.|.+. +|.|...+.+..++..++..|..++..+.+.++..|+|++.+..++..
T Consensus        16 ~Ylq~LV~efq~tt~~eakeqv~ANLANFAY-DP~Nys~Lrql~vLdlFvdsl~e~ne~LvefgIgglCNlC~d~~n~~~   94 (173)
T KOG4646|consen   16 EYLQHLVDEFQTTTNIEAKEQVTANLANFAY-DPINYSHLRQLDVLDLFVDSLEEQNELLVEFGIGGLCNLCLDKTNAKF   94 (173)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhcc-CcchHHHHHHhhHHHHHHHHhhcccHHHHHHhHHHHHhhccChHHHHH
Confidence            44566665 4456788999999999999999 689999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcH
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVP  195 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~  195 (375)
                      |.+.++++.++..+.++...+..+++.++..|+... ..+..+....+++
T Consensus        95 I~ea~g~plii~~lssp~e~tv~sa~~~l~~l~~~~Rt~r~ell~p~Vv~  144 (173)
T KOG4646|consen   95 IREALGLPLIIFVLSSPPEITVHSAALFLQLLEFGERTERDELLSPAVVR  144 (173)
T ss_pred             HHHhcCCceEEeecCCChHHHHHHHHHHHHHhcCcccchhHHhccHHHHH
Confidence            999999999999999999999999999999999764 4455554433333

>TIGR02270 conserved hypothetical protein

Probab=98.60  E-value=2.9e-05  Score=73.35  Aligned_cols=242  Identities=17%  Similarity=0.009  Sum_probs=149.6

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ..++.++..|. .++.++...++..+.  .... +         .++..|+..|.+.++.++..++.+|+.+-.      
T Consensus        54 ~a~~~L~~aL~~d~~~ev~~~aa~al~--~~~~-~---------~~~~~L~~~L~d~~~~vr~aaa~ALg~i~~------  115 (410)
T TIGR02270        54 AATELLVSALAEADEPGRVACAALALL--AQED-A---------LDLRSVLAVLQAGPEGLCAGIQAALGWLGG------  115 (410)
T ss_pred             hHHHHHHHHHhhCCChhHHHHHHHHHh--ccCC-h---------HHHHHHHHHhcCCCHHHHHHHHHHHhcCCc------
Confidence            45667777774 455666555444442  1222 0         127778888888888888888888876543      


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                           .+..+.|+.+|++.++.++..++.++...           .....+.+..+|++.++.++..|+.+|..+-    
T Consensus       116 -----~~a~~~L~~~L~~~~p~vR~aal~al~~r-----------~~~~~~~L~~~L~d~d~~Vra~A~raLG~l~----  175 (410)
T TIGR02270       116 -----RQAEPWLEPLLAASEPPGRAIGLAALGAH-----------RHDPGPALEAALTHEDALVRAAALRALGELP----  175 (410)
T ss_pred             -----hHHHHHHHHHhcCCChHHHHHHHHHHHhh-----------ccChHHHHHHHhcCCCHHHHHHHHHHHHhhc----
Confidence                 23456777888878888887776555551           1234567888888888888888888887763    


Q ss_pred             CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                            ....++.|...+.+.  ++.++..|...+..+-           ....+..+..+...........+..++...
T Consensus       176 ------~~~a~~~L~~al~d~--~~~VR~aA~~al~~lG-----------~~~A~~~l~~~~~~~g~~~~~~l~~~lal~  236 (410)
T TIGR02270       176 ------RRLSESTLRLYLRDS--DPEVRFAALEAGLLAG-----------SRLAWGVCRRFQVLEGGPHRQRLLVLLAVA  236 (410)
T ss_pred             ------cccchHHHHHHHcCC--CHHHHHHHHHHHHHcC-----------CHhHHHHHHHHHhccCccHHHHHHHHHHhC
Confidence                  234556666666554  4567777777665332           223344455433333333333333333322


Q ss_pred             cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                        ..          ...++.|..++++.  .++..++.+|..+....        .++.|+..+.   +  +..++.|..
T Consensus       237 --~~----------~~a~~~L~~ll~d~--~vr~~a~~AlG~lg~p~--------av~~L~~~l~---d--~~~aR~A~e  289 (410)
T TIGR02270       237 --GG----------PDAQAWLRELLQAA--ATRREALRAVGLVGDVE--------AAPWCLEAMR---E--PPWARLAGE  289 (410)
T ss_pred             --Cc----------hhHHHHHHHHhcCh--hhHHHHHHHHHHcCCcc--------hHHHHHHHhc---C--cHHHHHHHH
Confidence              11          14567777777654  48889999998887766        6777776653   3  348888888


Q ss_pred             HHHHHHH
Q 017249          344 LLQDMVQ  350 (375)
Q Consensus       344 ~l~~l~~  350 (375)
                      .++.+..
T Consensus       290 A~~~ItG  296 (410)
T TIGR02270       290 AFSLITG  296 (410)
T ss_pred             HHHHhhC
Confidence            8888874

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.55  E-value=2e-05  Score=79.20  Aligned_cols=325  Identities=16%  Similarity=0.092  Sum_probs=215.5

Q ss_pred             HhHHHHHHHHhc---CC------CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----------C---C
Q 017249           24 QALIEELSDKLI---NG------DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----------P---N   81 (375)
Q Consensus        24 ~~~l~~Lv~~L~---s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----------~---~   81 (375)
                      ..+.|.|+..+.   ++      +..-...|+.-|.++.-..|.-|.+.+++.||++.|...++.          +   .
T Consensus      1374 YAGYPMLi~tiT~e~~D~~lfSk~~~PLL~AA~ELa~~T~~~SaLNaEELrRdnGle~L~tafSRCv~Vvt~~s~p~dma 1453 (2235)
T KOG1789|consen 1374 YAGYPMLIKTITLEAKDEALFSKGGGPLLSAAIELANYTLISSALNAEELRRDNGLEALVTAFSRCVPVVTMSSLPDDMA 1453 (2235)
T ss_pred             cCcchhhhhhhhhcccchhhhcCCCCcchHHHHHHHHHHHhhhhcCHHHHhhcccHHHHHHHHhhhheeeccccCCCcch
Confidence            345677776654   11      111234466666666655545677888999999999988852          1   2


Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH
Q 017249           82 LDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI  159 (375)
Q Consensus        82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l  159 (375)
                      ..+....++++.-.+. .+.+|..+.+ ...|..|+.++.-+ -|.+...++.++..++.+..-+..+...|++-.|+.+
T Consensus      1454 v~vc~~v~~c~SVaaQ-FE~cR~~~~EmPSiI~Dl~r~l~f~~vPr~~~aa~qci~~~aVd~~LQ~~LfqAG~LWYlLp~ 1532 (2235)
T KOG1789|consen 1454 VRVCIHVCDCFSVAAQ-FEACRQRLMEMPSIIGDLTRLLQFSNLPRLSTAAAQCIRAMAVDTLLQFQLFQAGVLWYLLPH 1532 (2235)
T ss_pred             hhHHHHHHHHHHHHHH-HHHHHHHHhhhhHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhHHHHHHHHHhhhHHHHHHH
Confidence            4567788888888887 6889999998 67889999988655 6778889999999999888888888889998888888


Q ss_pred             hccCC-------------H-------HHHHHHHHHHHHhccC-------CCCc--hhhhhc------------CCcHHHH
Q 017249          160 LHSGS-------------V-------QGRVDAVTALHYLSTC-------KENS--SPILDA------------TAVPPLI  198 (375)
Q Consensus       160 L~~~~-------------~-------~~~~~a~~~L~~L~~~-------~~~~--~~i~~~------------g~i~~Lv  198 (375)
                      |.+.+             .       ..-..++.+|..|+..       ++|.  ......            .....++
T Consensus      1533 Lf~YDyTlEESg~q~Se~~n~Q~~aNslA~~s~~ALSRL~G~~AdE~~TP~N~T~~~sL~alLTPyiAr~Lk~e~~~~iL 1612 (2235)
T KOG1789|consen 1533 LFHYDYTLEESGVQHSEDSNKQSLANSLARSSCEALSRLAGFRADEENTPDNDTVQASLRALLTPYIARCLKLETNDMVL 1612 (2235)
T ss_pred             HhcccccccccCccccccchHHHHHHHHHHHHHHHHHHHhccccccccCCCChhHHHHHHHhccHHHHHHHHHHHHHHHH
Confidence            74311             0       1223345555555431       1111  111111            1111122


Q ss_pred             HHhhhcccch----------------------------------------------------------------------
Q 017249          199 NLLKDCKKYS----------------------------------------------------------------------  208 (375)
Q Consensus       199 ~ll~~~~~~~----------------------------------------------------------------------  208 (375)
                      +.|.+..+.+                                                                      
T Consensus      1613 k~LNsN~E~Py~IWNn~TRaELLeFve~Qracq~~~G~~D~~yg~eF~Ys~h~KEliVG~ifirVYNeqPtf~l~ePk~F 1692 (2235)
T KOG1789|consen 1613 KTLNSNMENPYMIWNNGTRAELLEFVERQRACQTSNGPTDELYGAEFEYSVHKKELIVGDIFIRVYNEQPTFALHEPKKF 1692 (2235)
T ss_pred             HHhhcCCCCceeeecCccHHHHHHHHHHHHhccCCCCCchhhccceeeehhhccceeeeeEEEEeecCCCchhhcCcHHH
Confidence            2221110000                                                                      


Q ss_pred             -----------------------------------------------HHHHHHHHHHHHhhC-ChhhhHHHhh---ccCc
Q 017249          209 -----------------------------------------------KFAEKATALLEILSS-SEEGRIAITN---SDGG  237 (375)
Q Consensus       209 -----------------------------------------------~~~~~a~~~L~~l~~-~~~~~~~~~~---~~g~  237 (375)
                                                                     .-.+.++.+|.|+.. +|+-...+-.   .-|.
T Consensus      1693 a~~LlDyI~S~~~~l~~~~~~~~~s~d~ie~~~~V~sE~HgD~lPs~~~v~m~LtAL~Nli~~nPdlasvfgSe~~lig~ 1772 (2235)
T KOG1789|consen 1693 AIDLLDYIKSHSAELTGAPKPKAISDDLIEIDWGVGSEAHGDSLPTETKVLMTLTALANLVSANPDLASVFGSEILLIGN 1772 (2235)
T ss_pred             HHHHHHHHHHhHHHhcCCCCccccccchhhhhcccchhhhcCCCChHHHHHHHHHHHHHHHhhCcchhhhccchhhhhcc
Confidence                                                           001567788888765 3422111110   1266


Q ss_pred             HHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh--hhh
Q 017249          238 ILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ--EKR  314 (375)
Q Consensus       238 v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~--~~~  314 (375)
                      ++.+..+|. ++.+.++..|+.++..+..+.  ++...+.+.|.+..|+.++++. |..|+.+..+|..|+....  .++
T Consensus      1773 F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S~~~i~keA 1849 (2235)
T KOG1789|consen 1773 FPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSSNGQIGKEA 1849 (2235)
T ss_pred             cHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhcCcHHHHHH
Confidence            777777776 456789999999998877765  6788899999999999998854 8899999999999998884  367


Q ss_pred             hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 017249          315 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  354 (375)
Q Consensus       315 ~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~  354 (375)
                      .+.|.+.-++..+-  ...+++.+..|++++..|..+-+.
T Consensus      1850 ~~hg~l~yil~~~c--~~~~~QqRAqaAeLlaKl~Adkl~ 1887 (2235)
T KOG1789|consen 1850 LEHGGLMYILSILC--LTNSDQQRAQAAELLAKLQADKLT 1887 (2235)
T ss_pred             HhcCchhhhhHHHh--ccCcHHHHHHHHHHHHHhhhcccc
Confidence            88887777766543  344588889999999998765433

>KOG2023 consensus Nuclear transport receptor Karyopherin-beta2/Transportin (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.50  E-value=5.1e-06  Score=79.65  Aligned_cols=248  Identities=13%  Similarity=0.125  Sum_probs=158.0

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK  144 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~  144 (375)
                      ++|.|.++|.+++...++-|..+|..++.++.+.-+.-..    .-.+|.++++.++++|.+|..|+.|+..........
T Consensus       129 lLp~L~~~L~s~d~n~~EgA~~AL~KIcEDsa~~lds~~~~rpl~~mipkfl~f~~h~spkiRs~A~~cvNq~i~~~~qa  208 (885)
T KOG2023|consen  129 LLPQLCELLDSPDYNTCEGAFGALQKICEDSAQFLDSDVLTRPLNIMIPKFLQFFKHPSPKIRSHAVGCVNQFIIIQTQA  208 (885)
T ss_pred             HHHHHHHHhcCCcccccchhHHHHHHHHhhhHHHHhhhcccCchHHhHHHHHHHHhCCChhHHHHHHhhhhheeecCcHH
Confidence            6789999999999999999999999999877654333111    234899999999999999999999998876544322


Q ss_pred             hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      -...-...++.+..+-.+++++++.+.|.++..|......+-.---.++++.++..-.+.  ++.+...|+.....++..
T Consensus       209 l~~~iD~Fle~lFalanD~~~eVRk~vC~alv~Llevr~dkl~phl~~IveyML~~tqd~--dE~VALEACEFwla~aeq  286 (885)
T KOG2023|consen  209 LYVHIDKFLEILFALANDEDPEVRKNVCRALVFLLEVRPDKLVPHLDNIVEYMLQRTQDV--DENVALEACEFWLALAEQ  286 (885)
T ss_pred             HHHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHhcHHhcccchHHHHHHHHHHccCc--chhHHHHHHHHHHHHhcC
Confidence            222334677778888888899999999999999986532211111124555555555554  345667788888888888


Q ss_pred             hhhhHHHhhc-cCcHHHHHHHh----------ccCCh-------------------------------------------
Q 017249          225 EEGRIAITNS-DGGILTLVETV----------EDGSL-------------------------------------------  250 (375)
Q Consensus       225 ~~~~~~~~~~-~g~v~~Lv~lL----------~~~~~-------------------------------------------  250 (375)
                      +-.+..+... ...+|.|++-+          .+..+                                           
T Consensus       287 pi~~~~L~p~l~kliPvLl~~M~Ysd~D~~LL~~~eeD~~vpDreeDIkPRfhksk~~~~~~~~~~eDdddDe~DDdD~~  366 (885)
T KOG2023|consen  287 PICKEVLQPYLDKLIPVLLSGMVYSDDDIILLKNNEEDESVPDREEDIKPRFHKSKEHGNGEDADDEDDDDDEDDDDDAF  366 (885)
T ss_pred             cCcHHHHHHHHHHHHHHHHccCccccccHHHhcCccccccCCchhhhccchhhhchhccCcccccccccccccccccccc
Confidence            7444433310 13344444322          10000                                           


Q ss_pred             ---HHHHHHHHHHHHhcccCcHHHHHHHHHcC----ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhh--hhHH
Q 017249          251 ---VSTQHAVGALLSLCQSCRDKYRQLILKEG----AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSS--SVLE  321 (375)
Q Consensus       251 ---~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~--g~~~  321 (375)
                         .+|.+.+.+|..|+.         ++...    ++|.|.+.+.+..-.+||.++-+|..+++..-+-++..  ..++
T Consensus       367 ~dWNLRkCSAAaLDVLan---------vf~~elL~~l~PlLk~~L~~~~W~vrEagvLAlGAIAEGcM~g~~p~LpeLip  437 (885)
T KOG2023|consen  367 SDWNLRKCSAAALDVLAN---------VFGDELLPILLPLLKEHLSSEEWKVREAGVLALGAIAEGCMQGFVPHLPELIP  437 (885)
T ss_pred             ccccHhhccHHHHHHHHH---------hhHHHHHHHHHHHHHHHcCcchhhhhhhhHHHHHHHHHHHhhhcccchHHHHH
Confidence               133333333333322         12223    34555555667788999999999999998774433321  2556


Q ss_pred             HHHHHH
Q 017249          322 KIVYDI  327 (375)
Q Consensus       322 ~l~~~l  327 (375)
                      -++..|
T Consensus       438 ~l~~~L  443 (885)
T KOG2023|consen  438 FLLSLL  443 (885)
T ss_pred             HHHHHh
Confidence            555555

>TIGR02270 conserved hypothetical protein

Probab=98.47  E-value=2.8e-05  Score=73.45  Aligned_cols=212  Identities=15%  Similarity=0.025  Sum_probs=150.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..|+..|.++++.++..++..|..+-..            +..+.|+.+|++.++.++..++.++.....        
T Consensus        87 ~~~~L~~~L~d~~~~vr~aaa~ALg~i~~~------------~a~~~L~~~L~~~~p~vR~aal~al~~r~~--------  146 (410)
T TIGR02270        87 DLRSVLAVLQAGPEGLCAGIQAALGWLGGR------------QAEPWLEPLLAASEPPGRAIGLAALGAHRH--------  146 (410)
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHhcCCch------------HHHHHHHHHhcCCChHHHHHHHHHHHhhcc--------
Confidence            478899999888888888888888754222            347889999999999999888877776222        


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS  185 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~  185 (375)
                          ...+.+..+|++.++.++..|+.+|..+-          ....++.|...+.+.++.++..|++++..+-.     
T Consensus       147 ----~~~~~L~~~L~d~d~~Vra~A~raLG~l~----------~~~a~~~L~~al~d~~~~VR~aA~~al~~lG~-----  207 (410)
T TIGR02270       147 ----DPGPALEAALTHEDALVRAAALRALGELP----------RRLSESTLRLYLRDSDPEVRFAALEAGLLAGS-----  207 (410)
T ss_pred             ----ChHHHHHHHhcCCCHHHHHHHHHHHHhhc----------cccchHHHHHHHcCCCHHHHHHHHHHHHHcCC-----
Confidence                23568999999999999999999999873          35667888899999999999999999865522     


Q ss_pred             hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                           ..++..+..+.......  ....+..++...           .....++.|..+++++.  ++..++.++..+-.
T Consensus       208 -----~~A~~~l~~~~~~~g~~--~~~~l~~~lal~-----------~~~~a~~~L~~ll~d~~--vr~~a~~AlG~lg~  267 (410)
T TIGR02270       208 -----RLAWGVCRRFQVLEGGP--HRQRLLVLLAVA-----------GGPDAQAWLRELLQAAA--TRREALRAVGLVGD  267 (410)
T ss_pred             -----HhHHHHHHHHHhccCcc--HHHHHHHHHHhC-----------CchhHHHHHHHHhcChh--hHHHHHHHHHHcCC
Confidence                 23444555533332211  222233333322           12356778888887644  78888888876532


Q ss_pred             cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          266 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       266 ~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                                  ...++.|+..+.+.  .++..|..++..++.-.
T Consensus       268 ------------p~av~~L~~~l~d~--~~aR~A~eA~~~ItG~~  298 (410)
T TIGR02270       268 ------------VEAAPWCLEAMREP--PWARLAGEAFSLITGMD  298 (410)
T ss_pred             ------------cchHHHHHHHhcCc--HHHHHHHHHHHHhhCCC
Confidence                        34677777776543  38888999999988643

Members are found in Myxococcus xanthus (six members), Geobacter sulfurreducens, and Pseudomonas aeruginosa; a short protein homologous to the N-terminal region is found in Mesorhizobium loti. All sequence are from Proteobacteria. The function is unknown.

>KOG3678 consensus SARM protein (with sterile alpha and armadillo motifs) [Extracellular structures]

Probab=98.46  E-value=1.6e-05  Score=73.52  Aligned_cols=264  Identities=16%  Similarity=0.129  Sum_probs=176.6

Q ss_pred             hHHHHHhcCChHHHHHhhCCCCH--HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHH
Q 017249           60 TRSEFAAAGVVQPLVLMLVSPNL--DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILT  136 (375)
Q Consensus        60 ~~~~~~~~g~v~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~  136 (375)
                      ..+.+...|+++.|+.++.+++.  .++.++.+.|..+..  .+|++.+...| +..++.+-+.. .++.....+.+|.+
T Consensus       172 LCD~iR~~~~lD~Llrmf~aPn~et~vRve~~rlLEq~~~--aeN~d~va~~~-~~~Il~lAK~~e~~e~aR~~~~il~~  248 (832)
T KOG3678|consen  172 LCDAIRLDGGLDLLLRMFQAPNLETSVRVEAARLLEQILV--AENRDRVARIG-LGVILNLAKEREPVELARSVAGILEH  248 (832)
T ss_pred             hhhHhhccchHHHHHHHHhCCchhHHHHHHHHHHHHHHHh--hhhhhHHhhcc-chhhhhhhhhcCcHHHHHHHHHHHHH
Confidence            45667778999999999999875  458999999999885  57999999877 66666665444 67788888999999


Q ss_pred             hhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249          137 LSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEK  213 (375)
Q Consensus       137 Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  213 (375)
                      +..+.+ ....++..|+++.++-.++..++.+...++.+|.|++-.  ...+..+++..+.+-|.-+..+.  ++.++..
T Consensus       249 mFKHSeet~~~Lvaa~~lD~vl~~~rRt~P~lLRH~ALAL~N~~L~~~~a~qrrmveKr~~EWLF~LA~sk--Del~R~~  326 (832)
T KOG3678|consen  249 MFKHSEETCQRLVAAGGLDAVLYWCRRTDPALLRHCALALGNCALHGGQAVQRRMVEKRAAEWLFPLAFSK--DELLRLH  326 (832)
T ss_pred             HhhhhHHHHHHHHhhcccchheeecccCCHHHHHHHHHHhhhhhhhchhHHHHHHHHhhhhhhhhhhhcch--HHHHHHH
Confidence            998865 466677899999999999999999999999999999854  46677788777777676666554  4467777


Q ss_pred             HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHH--HcCChHHHHHHhhhC
Q 017249          214 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL--KEGAIPGLLRLTVEG  291 (375)
Q Consensus       214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~g~v~~L~~ll~~~  291 (375)
                      |+-+.+.|+.+.+.-..+- ..|.+..+-.++.+.++.          .++.+.    .+.-.  -...++.|+-++++.
T Consensus       327 AClAV~vlat~KE~E~~Vr-kS~TlaLVEPlva~~DP~----------~FARD~----hd~aQG~~~d~LqRLvPlLdS~  391 (832)
T KOG3678|consen  327 ACLAVAVLATNKEVEREVR-KSGTLALVEPLVASLDPG----------RFARDA----HDYAQGRGPDDLQRLVPLLDSN  391 (832)
T ss_pred             HHHHHhhhhhhhhhhHHHh-hccchhhhhhhhhccCcc----------hhhhhh----hhhhccCChHHHHHhhhhhhcc
Confidence            8888888887766655555 456554444444433332          111111    01110  123567777777755


Q ss_pred             CHHHHHHHHHHHHHhhc----CChh--hhh-hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          292 TFEAQERARTLLDLLRD----TPQE--KRL-SSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       292 ~~~~~~~A~~~L~~l~~----~~~~--~~~-~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      .-+.|--++  ...+.+    +.+.  +++ +.|.+++|- .+.++.|+  -+..-|.++|..+
T Consensus       392 R~EAq~i~A--F~l~~EAaIKs~Q~K~kVFseIGAIQaLK-evaSS~d~--vaakfAseALtvi  450 (832)
T KOG3678|consen  392 RLEAQCIGA--FYLCAEAAIKSLQGKTKVFSEIGAIQALK-EVASSPDE--VAAKFASEALTVI  450 (832)
T ss_pred             hhhhhhhHH--HHHHHHHHHHHhccchhHHHHHHHHHHHH-HHhcCchH--HHHHHHHHHHHHh
Confidence            444443333  222222    1122  344 578999884 56654554  4445566666665

>PF05536 Neurochondrin: Neurochondrin

Probab=98.46  E-value=1.4e-05  Score=78.50  Aligned_cols=235  Identities=17%  Similarity=0.117  Sum_probs=161.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh---hHHHHHHcCChHHHHHhhcCC-------ChHHHHHHHHHHHHhh
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNER---NKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLS  138 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~---~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls  138 (375)
                      .++..+.+|+..+.+-+-.++..+.++...++.   .++.+.+.=+.+.|-++|+++       ....+.-|+.+|..++
T Consensus         6 ~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~~f~   85 (543)
T PF05536_consen    6 SLEKCLSLLKSADDTERFAGLLLVTKLLDADDEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLAAFC   85 (543)
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHcCCCchhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHc
Confidence            367788999988866788888899999986553   344678887788999999873       3567888999999999


Q ss_pred             ccCCChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHH
Q 017249          139 AAAPNKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL  217 (375)
Q Consensus       139 ~~~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~  217 (375)
                      ..++....-.-.+-||.|++++.+.+. .+...++.+|..++..++....+++.|+++.|..++.+..   ...+.++.+
T Consensus        86 ~~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~~~---~~~E~Al~l  162 (543)
T PF05536_consen   86 RDPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPNQS---FQMEIALNL  162 (543)
T ss_pred             CChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHhCc---chHHHHHHH
Confidence            976643222223569999999988876 8999999999999999999999999999999999998843   346888999


Q ss_pred             HHHhhCChhhhHHHhhcc----CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH----HHcCChHHHHHHhh
Q 017249          218 LEILSSSEEGRIAITNSD----GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI----LKEGAIPGLLRLTV  289 (375)
Q Consensus       218 L~~l~~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l----~~~g~v~~L~~ll~  289 (375)
                      +.+++...... ..-...    ..+..+-..+.......+-..+..|..+-...+.......    +-..+...+..++.
T Consensus       163 L~~Lls~~~~~-~~~~~~~~l~~il~~La~~fs~~~~~~kfell~~L~~~L~~~~~~~~~~~~~~~W~~~l~~gl~~iL~  241 (543)
T PF05536_consen  163 LLNLLSRLGQK-SWAEDSQLLHSILPSLARDFSSFHGEDKFELLEFLSAFLPRSPILPLESPPSPKWLSDLRKGLRDILQ  241 (543)
T ss_pred             HHHHHHhcchh-hhhhhHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHhcCcCCccccccCChhhhHHHHHHHHHHHHh
Confidence            98887643311 111111    3344455555555556677888888888766521001111    22233444445555


Q ss_pred             hC-CHHHHHHHHHHHHHhh
Q 017249          290 EG-TFEAQERARTLLDLLR  307 (375)
Q Consensus       290 ~~-~~~~~~~A~~~L~~l~  307 (375)
                      +. .+.-|..|..+...+.
T Consensus       242 sr~~~~~R~~al~Laa~Ll  260 (543)
T PF05536_consen  242 SRLTPSQRDPALNLAASLL  260 (543)
T ss_pred             cCCCHHHHHHHHHHHHHHH
Confidence            54 4555655655555554

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.45  E-value=3.9e-05  Score=68.05  Aligned_cols=277  Identities=16%  Similarity=0.100  Sum_probs=190.8

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh----HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKT----RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~----~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      .+.|-.-|..++..++..+++.+..+..+. +.+    ...++..|.++.++.++...+.++-..|...+..++. .+..
T Consensus        84 mpdLQrGLiaddasVKiLackqigcilEdc-DtnaVseillvvNaeilklildcIggeddeVAkAAiesikrial-fpaa  161 (524)
T KOG4413|consen   84 MPDLQRGLIADDASVKILACKQIGCILEDC-DTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIAL-FPAA  161 (524)
T ss_pred             hHHHHhcccCCcchhhhhhHhhhhHHHhcC-chhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHh-cHHH
Confidence            334444444678889999999999998877 422    2234577999999999999999999999999999998 6777


Q ss_pred             HHHHHHcCChHHHHHh--hcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 017249          103 KVKIATAGAIPPLVEL--LKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYL  178 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~l--L~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L  178 (375)
                      -..+.+......+-..  --.-+.-+|......+..++.- ++.....-..|.++.|..-|+. .+.-++..++.....|
T Consensus       162 leaiFeSellDdlhlrnlaakcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGteDtLVianciElvteL  241 (524)
T KOG4413|consen  162 LEAIFESELLDDLHLRNLAAKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTEDTLVIANCIELVTEL  241 (524)
T ss_pred             HHHhcccccCChHHHhHHHhhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCcceeehhhHHHHHHHH
Confidence            7777777666554322  2223555666777777776544 3344555567888888877776 5677888999999999


Q ss_pred             ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH----HHHHHhhCCh---hh-hHHHhhccCcHHHHHHHhccCCh
Q 017249          179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT----ALLEILSSSE---EG-RIAITNSDGGILTLVETVEDGSL  250 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~----~~L~~l~~~~---~~-~~~~~~~~g~v~~Lv~lL~~~~~  250 (375)
                      +.....++.+.+.|.++.+.+++...+.++--.-.++    +.+++.+...   +. ++...   -+++..+..+...++
T Consensus       242 aeteHgreflaQeglIdlicnIIsGadsdPfekfralmgfgkffgkeaimdvseeaiceali---iaidgsfEmiEmnDp  318 (524)
T KOG4413|consen  242 AETEHGREFLAQEGLIDLICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALI---IAIDGSFEMIEMNDP  318 (524)
T ss_pred             HHHhhhhhhcchhhHHHHHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHH---HHHHhhHHhhhcCCc
Confidence            9887788888889999999999986543332111122    3333333211   11 11111   245555666777889


Q ss_pred             HHHHHHHHHHHHhcccCcHHHHHHHHHcC--ChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          251 VSTQHAVGALLSLCQSCRDKYRQLILKEG--AIPGLLR-LTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       251 ~~~~~a~~~L~~l~~~~~~~~~~~l~~~g--~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ..++.|+.+++-+.+..  +..+.+.+.|  ..++|+- ..+.....-++.+..+|.+++..-
T Consensus       319 daieaAiDalGilGSnt--eGadlllkTgppaaehllarafdqnahakqeaaihaLaaIagel  379 (524)
T KOG4413|consen  319 DAIEAAIDALGILGSNT--EGADLLLKTGPPAAEHLLARAFDQNAHAKQEAAIHALAAIAGEL  379 (524)
T ss_pred             hHHHHHHHHHHhccCCc--chhHHHhccCChHHHHHHHHHhcccccchHHHHHHHHHHhhccc
Confidence            99999999999998776  6677787766  4555555 444333455677788999887543

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.45  E-value=4.5e-05  Score=74.45  Aligned_cols=318  Identities=12%  Similarity=0.108  Sum_probs=201.1

Q ss_pred             HHHHHHHHhcCCCH-HHHHHHHHHHHHHHhhCChhhHHHHHh-cCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChh
Q 017249           26 LIEELSDKLINGDL-ETKIEAARDIRKVVKKSSLKTRSEFAA-AGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~-~~~~~a~~~l~~l~~~~~~~~~~~~~~-~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .++.|+.....+.+ .+|..++.+|+-+|.+-+++  ...-. ..++-.++.....  ++..+|-.|+.+|.+--.-...
T Consensus       130 li~~lv~nv~~~~~~~~k~~slealGyice~i~pe--vl~~~sN~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~~~  207 (859)
T KOG1241|consen  130 LIVTLVSNVGEEQASMVKESSLEALGYICEDIDPE--VLEQQSNDILTAIVQGMRKEETSAAVRLAALNALYNSLEFTKA  207 (859)
T ss_pred             HHHHHHHhcccccchHHHHHHHHHHHHHHccCCHH--HHHHHHhHHHHHHHhhccccCCchhHHHHHHHHHHHHHHHHHH
Confidence            34444554444444 47888999999999988344  22222 2456667776644  4678999999999885432111


Q ss_pred             hHHH-HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          102 NKVK-IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-AP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       102 ~r~~-i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      +-.. .-..-.+..+++.-.+++.+++..|..||..+..- -+ -... +....+..-+..+++.++++...+...-+++
T Consensus       208 nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~~m~~y-M~~alfaitl~amks~~deValQaiEFWsti  286 (859)
T KOG1241|consen  208 NFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYEFMEPY-MEQALFAITLAAMKSDNDEVALQAIEFWSTI  286 (859)
T ss_pred             hhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence            1111 11233455666676788999999999999987542 12 1222 2344555666677888888888887666666


Q ss_pred             ccCC-C-----------Cc----hhhh---hcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249          179 STCK-E-----------NS----SPIL---DATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNS  234 (375)
Q Consensus       179 ~~~~-~-----------~~----~~i~---~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~  234 (375)
                      |... +           ..    ..+.   -.+++|.|+++|...+++.     ....+|..+|.-++..       . .
T Consensus       287 ceEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~kqde~~d~DdWnp~kAAg~CL~l~A~~-------~-~  358 (859)
T KOG1241|consen  287 CEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTKQDEDDDDDDWNPAKAAGVCLMLFAQC-------V-G  358 (859)
T ss_pred             HHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHhCCCCcccccCcHHHHHHHHHHHHHHH-------h-c
Confidence            5321 0           11    1111   1367888999887622111     2334555555544422       1 2


Q ss_pred             cCcHHHHHHH----hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          235 DGGILTLVET----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       235 ~g~v~~Lv~l----L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ...++.++++    +++++-.-++.|+.+++.+-.+..+. +..=.-.+++|.++.++.+++-.++..++|.|..++++-
T Consensus       359 D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~-~Lt~iV~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l  437 (859)
T KOG1241|consen  359 DDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPD-KLTPIVIQALPSIINLMSDPSLWVKDTAAWTLGRIADFL  437 (859)
T ss_pred             ccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchh-hhhHHHhhhhHHHHHHhcCchhhhcchHHHHHHHHHhhc
Confidence            3455555555    45667777888999999988876433 333345789999999999889999999999999999988


Q ss_pred             hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249          311 QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  355 (375)
Q Consensus       311 ~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~  355 (375)
                      +......-..+.++..+.-.....|+....+.+++-.|.++..+.
T Consensus       438 ~e~~~n~~~l~~~l~~l~~gL~DePrva~N~CWAf~~Laea~~eA  482 (859)
T KOG1241|consen  438 PEAIINQELLQSKLSALLEGLNDEPRVASNVCWAFISLAEAAYEA  482 (859)
T ss_pred             hhhcccHhhhhHHHHHHHHHhhhCchHHHHHHHHHHHHHHHHHHh
Confidence            764444333333333332233445999999999999998775543

>PF05536 Neurochondrin: Neurochondrin

Probab=98.39  E-value=3.2e-05  Score=75.90  Aligned_cols=236  Identities=16%  Similarity=0.091  Sum_probs=158.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh---hHHHHHhcCChHHHHHhhCCC-------CHHHHHHHHHHHH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK---TRSEFAAAGVVQPLVLMLVSP-------NLDAIESSLLALL   93 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~g~v~~Lv~~L~~~-------~~~~~~~a~~~L~   93 (375)
                      ...+.+.+.+|++.+.+.|..++-.+.++.... +.   .++.+.+.=+.+.|-++|.++       ....+.-|+..|.
T Consensus         4 ~~~l~~c~~lL~~~~D~~rfagL~lvtk~~~~~-~~~~~~~~~v~~aig~~Fl~RLL~t~~~~~~~~~~~~~~LavsvL~   82 (543)
T PF05536_consen    4 SASLEKCLSLLKSADDTERFAGLLLVTKLLDAD-DEDSQTRRRVFEAIGFKFLDRLLRTGSVPSDCPPEEYLSLAVSVLA   82 (543)
T ss_pred             hHHHHHHHHHhccCCcHHHHHHHHHHHHcCCCc-hhhHHHHHHHHHhcChhHHHHHhcCCCCCCCCCHHHHHHHHHHHHH
Confidence            456889999999888888999999999999877 42   344566776678888888773       3567888999999


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCCh-HHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQNG-TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV  172 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~-~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~  172 (375)
                      .+|. .++....---.+-||.|+..+.+.+. ++...+..+|..++..++++..+.+.|+++.|.+.+.+ .+.....|+
T Consensus        83 ~f~~-~~~~a~~~~~~~~IP~Lle~l~~~s~~~~v~dalqcL~~Ias~~~G~~aLl~~g~v~~L~ei~~~-~~~~~E~Al  160 (543)
T PF05536_consen   83 AFCR-DPELASSPQMVSRIPLLLEILSSSSDLETVDDALQCLLAIASSPEGAKALLESGAVPALCEIIPN-QSFQMEIAL  160 (543)
T ss_pred             HHcC-ChhhhcCHHHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHcCcHhHHHHHhcCCHHHHHHHHHh-CcchHHHHH
Confidence            9998 56554333334569999999988876 99999999999999999999999999999999999988 455688888


Q ss_pred             HHHHHhccCCCCchhhhh----cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh--hHHHhhccCcHHHHH----
Q 017249          173 TALHYLSTCKENSSPILD----ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG--RIAITNSDGGILTLV----  242 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~----~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~~~~g~v~~Lv----  242 (375)
                      .++.++.........--.    ...++.+-+.+......  .+-..+..|..+-...+.  ..... .......+.    
T Consensus       161 ~lL~~Lls~~~~~~~~~~~~~l~~il~~La~~fs~~~~~--~kfell~~L~~~L~~~~~~~~~~~~-~~~W~~~l~~gl~  237 (543)
T PF05536_consen  161 NLLLNLLSRLGQKSWAEDSQLLHSILPSLARDFSSFHGE--DKFELLEFLSAFLPRSPILPLESPP-SPKWLSDLRKGLR  237 (543)
T ss_pred             HHHHHHHHhcchhhhhhhHHHHHHHHHHHHHHHHhhccc--hHHHHHHHHHHhcCcCCccccccCC-hhhhHHHHHHHHH
Confidence            888888754321110011    12334444444433222  233356667666543321  11111 234444444    


Q ss_pred             HHhcc-CChHHHHHHHHHHHHhcc
Q 017249          243 ETVED-GSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       243 ~lL~~-~~~~~~~~a~~~L~~l~~  265 (375)
                      .+|.+ ..+..|..++.....+..
T Consensus       238 ~iL~sr~~~~~R~~al~Laa~Ll~  261 (543)
T PF05536_consen  238 DILQSRLTPSQRDPALNLAASLLD  261 (543)
T ss_pred             HHHhcCCCHHHHHHHHHHHHHHHH
Confidence            33333 345556666665555544

>KOG1789 consensus Endocytosis protein RME-8, contains DnaJ domain [Intracellular trafficking, secretion, and vesicular transport; Posttranslational modification, protein turnover, chaperones]

Probab=98.38  E-value=0.00056  Score=69.28  Aligned_cols=317  Identities=14%  Similarity=0.086  Sum_probs=201.9

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      +.++.++..|. .+++.++..|+..+..+....  ++.+-++..|.+..|+.+|.+. +..++.++..|..|+. +++.-
T Consensus      1771 g~F~l~~~~lr~~~~~~iq~LaL~Vi~~~Tan~--~Cv~~~a~~~vL~~LL~lLHS~-PS~R~~vL~vLYAL~S-~~~i~ 1846 (2235)
T KOG1789|consen 1771 GNFPLLITYLRCRKHPKLQILALQVILLATANK--ECVTDLATCNVLTTLLTLLHSQ-PSMRARVLDVLYALSS-NGQIG 1846 (2235)
T ss_pred             cccHHHHHHHHHcCCchHHHHHHHHHHHHhccc--HHHHHHHhhhHHHHHHHHHhcC-hHHHHHHHHHHHHHhc-CcHHH
Confidence            34566677776 578889999999998888777  8999999999999999999875 5679999999999998 56666


Q ss_pred             HHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCC--ChhHH----------H--hcCChHHHHHHhccC--CH-
Q 017249          104 VKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP--NKPAI----------A--ASGAAPLLVQILHSG--SV-  165 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~--~~~~i----------~--~~~~l~~L~~lL~~~--~~-  165 (375)
                      ..-.+.|++..+..++- +.++..|..++..+..|..++-  .+..|          +  -.++-++.++++...  ++ 
T Consensus      1847 keA~~hg~l~yil~~~c~~~~~QqRAqaAeLlaKl~Adkl~GPrV~ITL~kFLP~~f~d~~RD~PEAaVH~fE~T~EnPE 1926 (2235)
T KOG1789|consen 1847 KEALEHGGLMYILSILCLTNSDQQRAQAAELLAKLQADKLTGPRVTITLIKFLPEIFADSLRDSPEAAVHMFESTSENPE 1926 (2235)
T ss_pred             HHHHhcCchhhhhHHHhccCcHHHHHHHHHHHHHhhhccccCCceeeehHHhchHHHHHHHhcCHHHHHHHHhccCCCcc
Confidence            66667788888877664 4578899999999999876642  12111          1  012224555555432  22 


Q ss_pred             -----HHHHHHHHHHHHhcc--------CCCCc-------------------------hhhhh------------cCCcH
Q 017249          166 -----QGRVDAVTALHYLST--------CKENS-------------------------SPILD------------ATAVP  195 (375)
Q Consensus       166 -----~~~~~a~~~L~~L~~--------~~~~~-------------------------~~i~~------------~g~i~  195 (375)
                           ..+...-..+..+..        ++...                         ..+.+            .+.++
T Consensus      1927 LiWn~~~r~kvS~~i~tM~~~~y~~QQk~p~~~W~~PEqsAg~~Ea~~E~aVGG~~~R~Fi~~P~f~LR~Pk~FL~~LLe 2006 (2235)
T KOG1789|consen 1927 LIWNEVTRQKVSGIIDTMVGKLYEQQQKDPTVKWNTPEQSAGTSEADKECAVGGSINREFVVGPGFNLRHPKLFLTELLE 2006 (2235)
T ss_pred             cccCHhHHHHHHHHHHHHHHHHHHHhccCCcccccCchhhcchhhhccCcccchhhhHHHhhCCCCcccCHHHHHHHHHH
Confidence                 222333333333321        11110                         01111            12344


Q ss_pred             HHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHH
Q 017249          196 PLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL  274 (375)
Q Consensus       196 ~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  274 (375)
                      .++.++....+.....+....++-.|.. +|.-..++- .-|.+|.++..+...+..+-..|+++|..|+.+.  -+.++
T Consensus      2007 k~lelm~~~~peqh~l~lLt~A~V~L~r~hP~LADqip-~LGylPK~~~Am~~~n~s~P~SaiRVlH~Lsen~--~C~~A 2083 (2235)
T KOG1789|consen 2007 KVLELMSRPTPEQHELDLLTKAFVELVRHHPNLADQLP-SLGYLPKFCTAMCLQNTSAPRSAIRVLHELSENQ--FCCDA 2083 (2235)
T ss_pred             HHHHHhcCCCcccchhHHHHHHHHHHHHhCcchhhhCC-CccchHHHHHHHHhcCCcCcHHHHHHHHHHhhcc--HHHHH
Confidence            5555555544443333333444444444 444444444 6799999999987666556689999999999875  77888


Q ss_pred             HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh----hhhhhhhHHHHHHHHhhc----CCChHHHHHHHHHHHH
Q 017249          275 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVYDIAAR----VDGADKAAETAKRLLQ  346 (375)
Q Consensus       275 l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~g~~~~l~~~l~~~----~~g~~~~~~~a~~~l~  346 (375)
                      +.....+..++..+... +..---|+.+|..+-...+.    ...+.|.++-|+.+|.+.    .+.-..++....++|+
T Consensus      2084 MA~l~~i~~~m~~mkK~-~~~~GLA~EalkR~~~r~~~eLVAQ~LK~gLvpyLL~LLd~~tL~~~~~~aas~A~Iv~aLk 2162 (2235)
T KOG1789|consen 2084 MAQLPCIDGIMKSMKKQ-PSLMGLAAEALKRLMKRNTGELVAQMLKCGLVPYLLQLLDSSTLNGVSNGAAARAEIVDALK 2162 (2235)
T ss_pred             HhccccchhhHHHHHhc-chHHHHHHHHHHHHHHHhHHHHHHHHhccCcHHHHHHHhccccccccCchhHHHHHHHHHHH
Confidence            98877777788866643 33334778888877665544    456678888888766422    1111444455555666


Q ss_pred             HHH
Q 017249          347 DMV  349 (375)
Q Consensus       347 ~l~  349 (375)
                      ..+
T Consensus      2163 ~~~ 2165 (2235)
T KOG1789|consen 2163 SAI 2165 (2235)
T ss_pred             HHH
Confidence            554

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.37  E-value=0.00011  Score=70.72  Aligned_cols=278  Identities=14%  Similarity=0.139  Sum_probs=178.7

Q ss_pred             HHHHHHHHhhCChhhHHHHHhcCChHHHHHhh----------CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249           46 ARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML----------VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL  115 (375)
Q Consensus        46 ~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L----------~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L  115 (375)
                      +.+|.-++.+.  ...+.+....++..|..+-          ...+.++...|+++|.|+...++..|..+.+.|..+.+
T Consensus         2 L~~LRiLsRd~--~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s~~aR~~~~~~~~~~~l   79 (446)
T PF10165_consen    2 LETLRILSRDP--TGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLSPSARQIFVDLGLAEKL   79 (446)
T ss_pred             HHHHHHHccCc--ccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCCHHHHHHHHHcCcHHHH
Confidence            34455555554  4555555555566665554          34578999999999999999999999999999999999


Q ss_pred             HHhhcCC-----ChHHHHHHHHHHHHhhccC-CChhHHH-hcCChHHHHHHhcc-----------------CCHHHHHHH
Q 017249          116 VELLKFQ-----NGTLRELAAAAILTLSAAA-PNKPAIA-ASGAAPLLVQILHS-----------------GSVQGRVDA  171 (375)
Q Consensus       116 v~lL~~~-----~~~~~~~a~~~L~~Ls~~~-~~~~~i~-~~~~l~~L~~lL~~-----------------~~~~~~~~a  171 (375)
                      +..|+..     +.++.....+.|.-++... ..+..+. +.+++..++..|..                 .+......+
T Consensus        80 ~~~Lk~~~~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~Ei  159 (446)
T PF10165_consen   80 CERLKNYSDSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEI  159 (446)
T ss_pred             HHHHHcccccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHH
Confidence            9999876     6788888888887776543 3454544 55777877776521                 123457788


Q ss_pred             HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc-------ccchHHHHHHHHHHHHhhCC-hhh-------hHHH---hh
Q 017249          172 VTALHYLSTCKENSSPILDATAVPPLINLLKDC-------KKYSKFAEKATALLEILSSS-EEG-------RIAI---TN  233 (375)
Q Consensus       172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~-------~~~~~~~~~a~~~L~~l~~~-~~~-------~~~~---~~  233 (375)
                      +.++.|++........--..+.++.++.++..-       .+.......+..+|.|+-.. ...       ....   ..
T Consensus       160 LKllFNit~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~  239 (446)
T PF10165_consen  160 LKLLFNITLHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGD  239 (446)
T ss_pred             HHHHHHhhhccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCC
Confidence            999999986533222212245666666665533       11223445556666665211 111       0000   11


Q ss_pred             ccCcHHHHHHHhcc-----CC---hHHHHHHHHHHHHhcccCcHHHHHHHHH----------------cCChHHHHHHhh
Q 017249          234 SDGGILTLVETVED-----GS---LVSTQHAVGALLSLCQSCRDKYRQLILK----------------EGAIPGLLRLTV  289 (375)
Q Consensus       234 ~~g~v~~Lv~lL~~-----~~---~~~~~~a~~~L~~l~~~~~~~~~~~l~~----------------~g~v~~L~~ll~  289 (375)
                      ....+..|+.+|+.     ..   ...-...+.+|.+++..+ ...|+.+..                ...-..|++++.
T Consensus       240 ~~~~v~~Ll~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~-~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt  318 (446)
T PF10165_consen  240 NMDVVERLLDFLDKRLDKYEALKLDELLTPLLTLLTRLARAA-REVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMT  318 (446)
T ss_pred             ChHHHHHHHHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhc-HHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhC
Confidence            23456777777742     11   245566778888888876 344555432                225578899998


Q ss_pred             hCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHH
Q 017249          290 EGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYD  326 (375)
Q Consensus       290 ~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~  326 (375)
                      +..+.++..++..|..||.....   +.+..|..-+++..
T Consensus       319 ~~~~~~k~~vaellf~Lc~~d~~~~v~~~GyG~AaG~L~~  358 (446)
T PF10165_consen  319 SPDPQLKDAVAELLFVLCKEDASRFVKYVGYGNAAGFLAS  358 (446)
T ss_pred             CCCchHHHHHHHHHHHHHhhhHHHHHHHcCchhHHHHHHH
Confidence            88899999999999999987755   44456655555543

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.35  E-value=0.00027  Score=68.80  Aligned_cols=257  Identities=13%  Similarity=0.128  Sum_probs=173.0

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      .++.-+.++.+|+++.+-++..|+-.+..++..-|+..|.      ..|.|++-|.++|+.++-.|+..++.|++.+|.+
T Consensus       142 ARDLa~Dv~tLL~sskpYvRKkAIl~lykvFLkYPeAlr~------~FprL~EkLeDpDp~V~SAAV~VICELArKnPkn  215 (877)
T KOG1059|consen  142 ARDLADDVFTLLNSSKPYVRKKAILLLYKVFLKYPEALRP------CFPRLVEKLEDPDPSVVSAAVSVICELARKNPQN  215 (877)
T ss_pred             hHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHhhhHhHhh------hHHHHHHhccCCCchHHHHHHHHHHHHHhhCCcc
Confidence            3566788999999999999999999999998777344444      4789999999999999999999999999988877


Q ss_pred             HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHHHh--
Q 017249          103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALHYL--  178 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L--  178 (375)
                      .-.+     -|.+..+|... +-=+....+..+.+|+...+-    .....+++|.+++++.. ..+.+.+..++..-  
T Consensus       216 yL~L-----AP~ffkllttSsNNWmLIKiiKLF~aLtplEPR----LgKKLieplt~li~sT~AmSLlYECvNTVVa~s~  286 (877)
T KOG1059|consen  216 YLQL-----APLFYKLLVTSSNNWVLIKLLKLFAALTPLEPR----LGKKLIEPITELMESTVAMSLLYECVNTVVAVSM  286 (877)
T ss_pred             cccc-----cHHHHHHHhccCCCeehHHHHHHHhhccccCch----hhhhhhhHHHHHHHhhHHHHHHHHHHHHheeehh
Confidence            6544     56778877544 444566777788888765441    23467899999998875 45566676665533  


Q ss_pred             ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      +.+-.+....+. -.++.|--++.++  ++.++-.++-+++.+...+...-+     ..-+.++..|.+.++.+|..|+.
T Consensus       287 s~g~~d~~asiq-LCvqKLr~fieds--DqNLKYlgLlam~KI~ktHp~~Vq-----a~kdlIlrcL~DkD~SIRlrALd  358 (877)
T KOG1059|consen  287 SSGMSDHSASIQ-LCVQKLRIFIEDS--DQNLKYLGLLAMSKILKTHPKAVQ-----AHKDLILRCLDDKDESIRLRALD  358 (877)
T ss_pred             ccCCCCcHHHHH-HHHHHHhhhhhcC--CccHHHHHHHHHHHHhhhCHHHHH-----HhHHHHHHHhccCCchhHHHHHH
Confidence            332222222221 1455555566665  345666667777776653322111     23356778899999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC-HHHH-HHHHHHHHHhhcCC
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQ-ERARTLLDLLRDTP  310 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~-~~~~-~~A~~~L~~l~~~~  310 (375)
                      .|..+....   +...     ++..|+..+...+ ..-+ +-...++..|+.+.
T Consensus       359 Ll~gmVskk---Nl~e-----IVk~LM~~~~~ae~t~yrdell~~II~iCS~sn  404 (877)
T KOG1059|consen  359 LLYGMVSKK---NLME-----IVKTLMKHVEKAEGTNYRDELLTRIISICSQSN  404 (877)
T ss_pred             HHHHHhhhh---hHHH-----HHHHHHHHHHhccchhHHHHHHHHHHHHhhhhh
Confidence            999887653   2222     3456666444322 2344 44455777777666

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.34  E-value=8.4e-05  Score=71.26  Aligned_cols=306  Identities=16%  Similarity=0.151  Sum_probs=182.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHH-HHHHHHHhhccChhhHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIES-SLLALLNLAVRNERNKV  104 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~-a~~~L~~L~~~~~~~r~  104 (375)
                      ..+.+.+++.+.+...+..+...+..+..+.   ....+.+.+++..|-....+.....+.. +.-+....+..-.    
T Consensus       135 ~l~~l~~ll~~~~~~~~~~aa~~~ag~v~g~---~i~~~~~~~~l~~l~~ai~dk~~~~~re~~~~a~~~~~~~Lg----  207 (569)
T KOG1242|consen  135 VLELLLELLTSTKIAERAGAAYGLAGLVNGL---GIESLKEFGFLDNLSKAIIDKKSALNREAALLAFEAAQGNLG----  207 (569)
T ss_pred             HHHHHHHHhccccHHHHhhhhHHHHHHHcCc---HHhhhhhhhHHHHHHHHhcccchhhcHHHHHHHHHHHHHhcC----
Confidence            4555666666666677777777777776665   4444556677777777776654333222 2222222221110    


Q ss_pred             HHHHcCChHHHHHhh---cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          105 KIATAGAIPPLVELL---KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL---~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      ...+.+.++.|-.++   .+....+|..|..+...+...-..   ......++.++.-+....-..+..++..|..++..
T Consensus       208 ~~~EPyiv~~lp~il~~~~d~~~~Vr~Aa~~a~kai~~~~~~---~aVK~llpsll~~l~~~kWrtK~aslellg~m~~~  284 (569)
T KOG1242|consen  208 PPFEPYIVPILPSILTNFGDKINKVREAAVEAAKAIMRCLSA---YAVKLLLPSLLGSLLEAKWRTKMASLELLGAMADC  284 (569)
T ss_pred             CCCCchHHhhHHHHHHHhhccchhhhHHHHHHHHHHHHhcCc---chhhHhhhhhHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            222344444444444   445677777777766665332110   01122344444444444567788889999988887


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      .+..-......++|.+.+.|.+.  .+.+++.+..++..++...+|-. +.   ..++.|+..+.+++..+ ..++..|.
T Consensus       285 ap~qLs~~lp~iiP~lsevl~DT--~~evr~a~~~~l~~~~svidN~d-I~---~~ip~Lld~l~dp~~~~-~e~~~~L~  357 (569)
T KOG1242|consen  285 APKQLSLCLPDLIPVLSEVLWDT--KPEVRKAGIETLLKFGSVIDNPD-IQ---KIIPTLLDALADPSCYT-PECLDSLG  357 (569)
T ss_pred             chHHHHHHHhHhhHHHHHHHccC--CHHHHHHHHHHHHHHHHhhccHH-HH---HHHHHHHHHhcCcccch-HHHHHhhc
Confidence            76666667788999999999987  56789999999999987655554 22   47888999988766322 34444443


Q ss_pred             HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcC-CChHHHHHH
Q 017249          262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARV-DGADKAAET  340 (375)
Q Consensus       262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~-~g~~~~~~~  340 (375)
                      .-..-.  . .+.-.-.=.+|.|.+-+...+..+++.++.+..|++.-.++...-.-+++.|+..+..-. +-.|.+|+-
T Consensus       358 ~ttFV~--~-V~~psLalmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~lapfl~~Llp~lk~~~~d~~PEvR~v  434 (569)
T KOG1242|consen  358 ATTFVA--E-VDAPSLALMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLAPFLPSLLPGLKENLDDAVPEVRAV  434 (569)
T ss_pred             ceeeee--e-ecchhHHHHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHhhhHHHHhhHHHHHhcCCChhHHHH
Confidence            322211  0 000000124566666777788899999999999999877432222334444433333222 224899999


Q ss_pred             HHHHHHHHHHH
Q 017249          341 AKRLLQDMVQR  351 (375)
Q Consensus       341 a~~~l~~l~~~  351 (375)
                      +.++|.-+.++
T Consensus       435 aarAL~~l~e~  445 (569)
T KOG1242|consen  435 AARALGALLER  445 (569)
T ss_pred             HHHHHHHHHHH
Confidence            99999666543

>KOG4413 consensus 26S proteasome regulatory complex, subunit PSMD5 [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=6.3e-05  Score=66.73  Aligned_cols=289  Identities=13%  Similarity=0.079  Sum_probs=196.4

Q ss_pred             HHHHHhhHhHHHHHHHHhcCC-------C---HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHH
Q 017249           17 EAWNQRKQALIEELSDKLING-------D---LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE   86 (375)
Q Consensus        17 ~~~~~~~~~~l~~Lv~~L~s~-------~---~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~   86 (375)
                      +...+....-+|.....|+-+       +   .+..-.++.+|-.+.+..  +..+.  -.+..+.|-.-|..++..++.
T Consensus        25 SVkealdlfeLpqiaaaLqldpdifgfeNenhrekttlcVscLERLfkak--egahl--apnlmpdLQrGLiaddasVKi  100 (524)
T KOG4413|consen   25 SVKEALDLFELPQIAAALQLDPDIFGFENENHREKTTLCVSCLERLFKAK--EGAHL--APNLMPDLQRGLIADDASVKI  100 (524)
T ss_pred             HHHHhcccchhHHHHHHHhcCCCCcccccccccchhhhHHHHHHHHHhhc--cchhh--chhhhHHHHhcccCCcchhhh
Confidence            334445555667777766632       2   223333777777777655  22221  113345555566777888889


Q ss_pred             HHHHHHHHhhccChhhH----HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHH--HHHh
Q 017249           87 SSLLALLNLAVRNERNK----VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL--VQIL  160 (375)
Q Consensus        87 ~a~~~L~~L~~~~~~~r----~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L--~~lL  160 (375)
                      -++..++-+..++..+-    ..+++.|..+.++..+...+.++-..|...+..++..+..-..+.....++.+  ..+-
T Consensus       101 LackqigcilEdcDtnaVseillvvNaeilklildcIggeddeVAkAAiesikrialfpaaleaiFeSellDdlhlrnla  180 (524)
T KOG4413|consen  101 LACKQIGCILEDCDTNAVSEILLVVNAEILKLILDCIGGEDDEVAKAAIESIKRIALFPAALEAIFESELLDDLHLRNLA  180 (524)
T ss_pred             hhHhhhhHHHhcCchhhHHHHHHHhhhhHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcHHHHHHhcccccCChHHHhHHH
Confidence            99998888887665432    34557899999999999999999999999999999888877777766665543  3333


Q ss_pred             ccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249          161 HSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  239 (375)
Q Consensus       161 ~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  239 (375)
                      ...+.-++...+..+..+.+- ++.......+|.+..|..-+.... +.-+..++......|+..+.++..+. ..|.++
T Consensus       181 akcndiaRvRVleLIieifSiSpesaneckkSGLldlLeaElkGte-DtLVianciElvteLaeteHgrefla-QeglId  258 (524)
T KOG4413|consen  181 AKCNDIARVRVLELIIEIFSISPESANECKKSGLLDLLEAELKGTE-DTLVIANCIELVTELAETEHGREFLA-QEGLID  258 (524)
T ss_pred             hhhhhHHHHHHHHHHHHHHhcCHHHHhHhhhhhHHHHHHHHhcCCc-ceeehhhHHHHHHHHHHHhhhhhhcc-hhhHHH
Confidence            344556677778888887654 455556566788888887777643 44577888999999999999998888 579999


Q ss_pred             HHHHHhcc--CChHHHHHHHHHHHHhcccCcH-H-HHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          240 TLVETVED--GSLVSTQHAVGALLSLCQSCRD-K-YRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       240 ~Lv~lL~~--~~~~~~~~a~~~L~~l~~~~~~-~-~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      .+..++..  .+|--+-.++.....+-...+- + .-+.+.+  .-+++...+++...||..++.|+.+|..+.+...
T Consensus       259 licnIIsGadsdPfekfralmgfgkffgkeaimdvseeaicealiiaidgsfEmiEmnDpdaieaAiDalGilGSnte  336 (524)
T KOG4413|consen  259 LICNIISGADSDPFEKFRALMGFGKFFGKEAIMDVSEEAICEALIIAIDGSFEMIEMNDPDAIEAAIDALGILGSNTE  336 (524)
T ss_pred             HHHHHhhCCCCCcHHHHHHHHHHHHHhcchHHhhcCHHHHHHHHHHHHHhhHHhhhcCCchHHHHHHHHHHhccCCcc
Confidence            99999863  3344444455555554432210 0 0112222  2355666778888999999999999999987763

>PF10165 Ric8: Guanine nucleotide exchange factor synembryn; InterPro: IPR019318 Ric8 is involved in the EGL-30 neurotransmitter signalling pathway []

Probab=98.33  E-value=0.00017  Score=69.30  Aligned_cols=255  Identities=16%  Similarity=0.108  Sum_probs=173.6

Q ss_pred             chhhhHHHHHhhHhHHHHHHHHh----------cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-
Q 017249           12 TDQEEEAWNQRKQALIEELSDKL----------INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-   80 (375)
Q Consensus        12 ~~~~~~~~~~~~~~~l~~Lv~~L----------~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-   80 (375)
                      +.|..+...+...+++..|...-          .+.++++..+|+++|.|+...+ +..|..+++.|+.+.+++.|+.. 
T Consensus         9 sRd~~~~~~l~~~~~l~~L~~~a~l~~~~~~~~~~~~~~v~~EALKCL~N~lf~s-~~aR~~~~~~~~~~~l~~~Lk~~~   87 (446)
T PF10165_consen    9 SRDPTGLDPLFTEEGLSTLLKHAGLSESDEDEFESPDPDVSREALKCLCNALFLS-PSARQIFVDLGLAEKLCERLKNYS   87 (446)
T ss_pred             ccCcccchhhccHHHHHHHHHhcCCcccccccccCCChHHHHHHHHHHHHHHhCC-HHHHHHHHHcCcHHHHHHHHHccc
Confidence            34555677778888888888765          3568899999999999999999 99999999999999999999876 


Q ss_pred             ----CHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhhcC-----------------CChHHHHHHHHHHHHhh
Q 017249           81 ----NLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELLKF-----------------QNGTLRELAAAAILTLS  138 (375)
Q Consensus        81 ----~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls  138 (375)
                          +.++.--..+.|.-++......+..+++ .+++..++..|..                 .+......++.++.|+.
T Consensus        88 ~~~~~~d~~Fl~~RLLFLlTa~~~~~~~~L~~e~~~~~~l~~~L~~~l~~~~~~~~~~~~~~~~~~~~l~EiLKllFNit  167 (446)
T PF10165_consen   88 DSSQPSDVEFLDSRLLFLLTALRPDDRKKLIEEHHGVELLTEALERHLKVKSKSSQEPTAPSPMDEEALSEILKLLFNIT  167 (446)
T ss_pred             ccCCChhHHHHHHHHHHHHhcCChhHHHHHHHHhhhHHHHHHHHHHHHhcccccccccCCCCcchHHHHHHHHHHHHHhh
Confidence                6888899999999999888888888777 4788888776621                 13345667888999998


Q ss_pred             ccCCChhHHHhcCChHHHHHHhcc-------C--CHHHHHHHHHHHHHhccCC-CC-------ch----hhhhcCCcHHH
Q 017249          139 AAAPNKPAIAASGAAPLLVQILHS-------G--SVQGRVDAVTALHYLSTCK-EN-------SS----PILDATAVPPL  197 (375)
Q Consensus       139 ~~~~~~~~i~~~~~l~~L~~lL~~-------~--~~~~~~~a~~~L~~L~~~~-~~-------~~----~i~~~g~i~~L  197 (375)
                      .+......-.....++.++.+|..       .  .......+..+|.|+-... +.       ..    .......+..|
T Consensus       168 ~~~~~~~~~~~~~~~~~l~~il~~~l~~~~~~~~l~~~~~~~in~L~nlpl~~~~~l~~~~~~~~~~~~~~~~~~~v~~L  247 (446)
T PF10165_consen  168 LHYPKSVPEEFSPSIPHLVSILRRLLPPPPSSPPLDPPHSHAINALLNLPLECLDSLLSPKFQQSSLFPEGDNMDVVERL  247 (446)
T ss_pred             hccCcccchhhhHHHHHHHHHHHHHhccCCCCCcchhhHHHHHHHHhCCChHHHhhhhcccCCcccccCCCCChHHHHHH
Confidence            765433221123344444444321       1  2456778888888773110 00       11    11123456677


Q ss_pred             HHHhhhc----c--cchHHHHHHHHHHHHhhCC-hhhhHHHhh--------------ccC-cHHHHHHHhccCChHHHHH
Q 017249          198 INLLKDC----K--KYSKFAEKATALLEILSSS-EEGRIAITN--------------SDG-GILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       198 v~ll~~~----~--~~~~~~~~a~~~L~~l~~~-~~~~~~~~~--------------~~g-~v~~Lv~lL~~~~~~~~~~  255 (375)
                      +.+|...    .  .........+.+|..++.. ...|+.+-.              ..+ .-..|+.++.+..+.++..
T Consensus       248 l~~Ld~~l~~~~~~~l~~~l~PlL~lL~~~~~~~~~~Rk~lr~~lLP~~~Dr~~~~e~~~tL~~rLlrLmt~~~~~~k~~  327 (446)
T PF10165_consen  248 LDFLDKRLDKYEALKLDELLTPLLTLLTRLARAAREVRKYLRARLLPPDKDRKKPPEKGDTLRSRLLRLMTSPDPQLKDA  327 (446)
T ss_pred             HHHHHHHHHhcCcccchhhHhhHHHHHHHHHHhcHHHHHHHHHHhCCChhhcccCCCCCcchHHHHHHHhCCCCchHHHH
Confidence            7776542    1  1112344556667777764 444444332              122 3447999998888999999


Q ss_pred             HHHHHHHhcccC
Q 017249          256 AVGALLSLCQSC  267 (375)
Q Consensus       256 a~~~L~~l~~~~  267 (375)
                      +...|+.||..+
T Consensus       328 vaellf~Lc~~d  339 (446)
T PF10165_consen  328 VAELLFVLCKED  339 (446)
T ss_pred             HHHHHHHHHhhh
Confidence            999999999765

It is a guanine nucleotide exchange factor [] that regulates neurotransmitter secretion.

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.30  E-value=1.5e-06  Score=53.70  Aligned_cols=40  Identities=35%  Similarity=0.471  Sum_probs=38.0

Q ss_pred             hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           58 LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        58 ~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ++++..+++.|+++.|+++|++++.++++.|+++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~~   41 (41)
T PF00514_consen    2 PENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLAA   41 (41)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            6889999999999999999999999999999999999973

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.30  E-value=2.9e-05  Score=73.33  Aligned_cols=322  Identities=14%  Similarity=0.121  Sum_probs=201.5

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ..+.+++.+..++..+..++--|+..+.|++...  .......-....+.+.++-.+.+.. ...++..|-.+.++-...
T Consensus        82 ~~~iv~Pv~~cf~D~d~~vRyyACEsLYNiaKv~--k~~v~~~Fn~iFdvL~klsaDsd~~-V~~~aeLLdRLikdIVte  158 (675)
T KOG0212|consen   82 LEKIVPPVLNCFSDQDSQVRYYACESLYNIAKVA--KGEVLVYFNEIFDVLCKLSADSDQN-VRGGAELLDRLIKDIVTE  158 (675)
T ss_pred             HHHhhHHHHHhccCccceeeeHhHHHHHHHHHHh--ccCcccchHHHHHHHHHHhcCCccc-cccHHHHHHHHHHHhccc
Confidence            3567888999999999999999999999998665  1111111123445566665555544 344555555555543323


Q ss_pred             HH-HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhc-
Q 017249          103 KV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLS-  179 (375)
Q Consensus       103 r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-  179 (375)
                      ++ .+--.+.+|.|-.-+...++..|...+.-|..|-..++ ...+. -...++.|..+|.+++.+++.-+=.++.+.- 
T Consensus       159 ~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds~P~-~~m~~yl~~~ldGLf~~LsD~s~eVr~~~~t~l~~fL~  237 (675)
T KOG0212|consen  159 SASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDSVPD-LEMISYLPSLLDGLFNMLSDSSDEVRTLTDTLLSEFLA  237 (675)
T ss_pred             cccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhcCCc-HHHHhcchHHHHHHHHHhcCCcHHHHHHHHHHHHHHHH
Confidence            33 22223445555555555688899888887777744333 34443 3567888999999999998876666655543 


Q ss_pred             ---cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCCh-HHHHH
Q 017249          180 ---TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL-VSTQH  255 (375)
Q Consensus       180 ---~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~-~~~~~  255 (375)
                         +.+...   --...++.++.-+.++  ++.++..|+..+..+..-+...-... -+|++..+++.+.+..+ .+++.
T Consensus       238 eI~s~P~s~---d~~~~i~vlv~~l~ss--~~~iq~~al~Wi~efV~i~g~~~l~~-~s~il~~iLpc~s~~e~~~i~~~  311 (675)
T KOG0212|consen  238 EIRSSPSSM---DYDDMINVLVPHLQSS--EPEIQLKALTWIQEFVKIPGRDLLLY-LSGILTAILPCLSDTEEMSIKEY  311 (675)
T ss_pred             HHhcCcccc---CcccchhhccccccCC--cHHHHHHHHHHHHHHhcCCCcchhhh-hhhhhhhcccCCCCCccccHHHH
Confidence               223221   1124556666666655  45678888888888876544333333 46788888888876554 34444


Q ss_pred             HHHH---HHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhh--hhhhhhHHHHHHHHhh
Q 017249          256 AVGA---LLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK--RLSSSVLEKIVYDIAA  329 (375)
Q Consensus       256 a~~~---L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~g~~~~l~~~l~~  329 (375)
                      +..+   |..++...  ...+. ++.| .++.|.+.+.+...++|-.+..=+..+-+..+.+  .......+.|+..|  
T Consensus       312 a~~~n~~l~~l~s~~--~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~ql~~h~~~if~tLL~tL--  386 (675)
T KOG0212|consen  312 AQMVNGLLLKLVSSE--RLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQLLVHNDSIFLTLLKTL--  386 (675)
T ss_pred             HHHHHHHHHHHHhhh--hhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcchhhhhccHHHHHHHHhh--
Confidence            4332   33444332  22222 4433 7788888999999999988887555554444443  34455888888877  


Q ss_pred             cCCChHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017249          330 RVDGADKAAETAKRLLQDMVQRSMELSMTRI  360 (375)
Q Consensus       330 ~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~  360 (375)
                       .|.++..-..+-.++.++...+-+.|..+|
T Consensus       387 -sd~sd~vvl~~L~lla~i~~s~~~~~~~~f  416 (675)
T KOG0212|consen  387 -SDRSDEVVLLALSLLASICSSSNSPNLRKF  416 (675)
T ss_pred             -cCchhHHHHHHHHHHHHHhcCcccccHHHH
Confidence             477788889999999988766555444433

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.29  E-value=0.00013  Score=67.78  Aligned_cols=191  Identities=27%  Similarity=0.266  Sum_probs=144.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI  147 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  147 (375)
                      ..++.+++.+.+++..++..+.+.++.+..           ..+++.+..++.+.++.+|..++.+|..+          
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~-----------~~av~~l~~~l~d~~~~vr~~a~~aLg~~----------  101 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGS-----------EEAVPLLRELLSDEDPRVRDAAADALGEL----------  101 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhch-----------HHHHHHHHHHhcCCCHHHHHHHHHHHHcc----------
Confidence            468889999999999999999998766553           23588999999999999999999977776          


Q ss_pred             HhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch----------HHHHHHHH
Q 017249          148 AASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS----------KFAEKATA  216 (375)
Q Consensus       148 ~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~----------~~~~~a~~  216 (375)
                      .....++.|+..+. +++..++..+.++|..+-.          ...+..++..+.+.....          .++..+..
T Consensus       102 ~~~~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a~~  171 (335)
T COG1413         102 GDPEAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAAAE  171 (335)
T ss_pred             CChhHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHHHH
Confidence            34567899999998 5889999999999988743          234667777777653110          12233333


Q ss_pred             HHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHH
Q 017249          217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQ  296 (375)
Q Consensus       217 ~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~  296 (375)
                      .|..+           .+...++.+..++.+....++..|..+|..+....          ..+.+.+...+.+.+..++
T Consensus       172 ~l~~~-----------~~~~~~~~l~~~l~~~~~~vr~~Aa~aL~~~~~~~----------~~~~~~l~~~~~~~~~~vr  230 (335)
T COG1413         172 ALGEL-----------GDPEAIPLLIELLEDEDADVRRAAASALGQLGSEN----------VEAADLLVKALSDESLEVR  230 (335)
T ss_pred             HHHHc-----------CChhhhHHHHHHHhCchHHHHHHHHHHHHHhhcch----------hhHHHHHHHHhcCCCHHHH
Confidence            33322           24567888999999988899999999998886553          3456777888888899999


Q ss_pred             HHHHHHHHHhhcCC
Q 017249          297 ERARTLLDLLRDTP  310 (375)
Q Consensus       297 ~~A~~~L~~l~~~~  310 (375)
                      ..++..|..+....
T Consensus       231 ~~~~~~l~~~~~~~  244 (335)
T COG1413         231 KAALLALGEIGDEE  244 (335)
T ss_pred             HHHHHHhcccCcch
Confidence            99988888877665

>PF00514 Arm: Armadillo/beta-catenin-like repeat; InterPro: IPR000225 The armadillo (Arm) repeat is an approximately 40 amino acid long tandemly repeated sequence motif first identified in the Drosophila melanogaster segment polarity gene armadillo involved in signal transduction through wingless

Probab=98.27  E-value=1.7e-06  Score=53.40  Aligned_cols=40  Identities=45%  Similarity=0.568  Sum_probs=38.0

Q ss_pred             ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249           99 NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS  138 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  138 (375)
                      +++++..+++.|++|+|+++|++.++++++.|+++|+||+
T Consensus         1 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~v~~~a~~al~nl~   40 (41)
T PF00514_consen    1 SPENKQAIVEAGGIPPLVQLLKSPDPEVQEEAAWALGNLA   40 (41)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTSSSHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHcccHHHHHHHHcCCCHHHHHHHHHHHHHHh
Confidence            4678999999999999999999999999999999999997

Animal Arm-repeat proteins function in various processes, including intracellular signalling and cytoskeletal regulation, and include such proteins as beta-catenin, the junctional plaque protein plakoglobin, the adenomatous polyposis coli (APC) tumour suppressor protein, and the nuclear transport factor importin-alpha, amongst others []. A subset of these proteins is conserved across eukaryotic kingdoms. In higher plants, some Arm-repeat proteins function in intracellular signalling like their mammalian counterparts, while others have novel functions []. The 3-dimensional fold of an armadillo repeat is known from the crystal structure of beta-catenin, where the 12 repeats form a superhelix of alpha helices with three helices per unit []. The cylindrical structure features a positively charged grove, which presumably interacts with the acidic surfaces of the known interaction partners of beta-catenin.; GO: 0005515 protein binding; PDB: 2Z6G_A 1IQ1_C 3RZX_A 2C1M_A 3BTR_C 3OQS_A 3TPO_A 1IAL_A 1Q1S_C 1PJM_B ....

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=98.27  E-value=2.2e-05  Score=73.68  Aligned_cols=263  Identities=12%  Similarity=0.096  Sum_probs=181.2

Q ss_pred             HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC
Q 017249           42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF  121 (375)
Q Consensus        42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~  121 (375)
                      ...++.+|..++..- .-.|..+.+..++++|++.|+.++..+.--+...+.|+.-.....+..+.+.|.+..|+.++.+
T Consensus       406 ~~a~~l~LkS~SrSV-~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~s  484 (743)
T COG5369         406 FVAIVLFLKSMSRSV-TFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMS  484 (743)
T ss_pred             HHHHHHHHHHhhHHH-HHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhc
Confidence            334555666666655 5567778888899999999999876666777788888887777889999999999999999999


Q ss_pred             CChHHHHHHHHHHHHhhccCCCh--hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-C---CchhhhhcC---
Q 017249          122 QNGTLRELAAAAILTLSAAAPNK--PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-E---NSSPILDAT---  192 (375)
Q Consensus       122 ~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~---~~~~i~~~g---  192 (375)
                      .+..+|....|.+..+..++.+-  -.+...-++..+++..+++.-.++..++..|.|++.+. .   .+.......   
T Consensus       485 KDdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~~  564 (743)
T COG5369         485 KDDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPCFKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPRR  564 (743)
T ss_pred             chhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcccccHHHHHHHHHhcccccccccccceeEEecChHH
Confidence            99999999999999999887643  34456778999999999999999999999999998642 2   233333322   


Q ss_pred             -CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhc------------------------
Q 017249          193 -AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVE------------------------  246 (375)
Q Consensus       193 -~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~------------------------  246 (375)
                       ....|++.+...++  ...+..+.+|-+++.+.++.++++.. ...+..+..+|.                        
T Consensus       565 ylfk~l~~k~e~~np--~~i~~~~yilv~~aa~d~~l~~~V~~q~~~L~~i~eil~e~a~r~~L~pg~~~~~v~~p~s~~  642 (743)
T COG5369         565 YLFKRLIDKYEENNP--MEILEGCYILVRNAACDDTLDYIVQSQEDMLDSIFEILDEFAGRTPLSPGSKEEHVLLPISYT  642 (743)
T ss_pred             HHHHHHHHHHHhcCc--hhhhhhHHHHHHHHhccchHHHHHHhHHHHHHHHHHHHHHHcccCCCCCCCCcccccCcccee
Confidence             33445555555432  23344677777777666655554421 122222222221                        


Q ss_pred             -----------------------------cCChHHHHHHHHHHHHhcccCc--------HHHHHHHHHcCChHHHHHHhh
Q 017249          247 -----------------------------DGSLVSTQHAVGALLSLCQSCR--------DKYRQLILKEGAIPGLLRLTV  289 (375)
Q Consensus       247 -----------------------------~~~~~~~~~a~~~L~~l~~~~~--------~~~~~~l~~~g~v~~L~~ll~  289 (375)
                                                   +++++.--...|.+.|+.....        -+-.+.+.+.|.-+.|+....
T Consensus       643 ~v~l~e~~d~f~r~~~~~p~~D~~~~d~~~~NdE~~~agiw~~in~~w~~~~~~vtratveR~~iL~~~G~~e~l~k~q~  722 (743)
T COG5369         643 IVNLSENSDKFKRLVLTTPHLDNMKKDSTTRNDELSIAGIWIIINLSWKEDGSEVTRATVERIQILCANGIREWLVKIQA  722 (743)
T ss_pred             eecccccccccccceecCCCccccccccCCCchhhhhccceEEEecccCccCCccchhhHHHHHHHHHccHHHHHHHHhc
Confidence                                         0112233344555555433211        122445566788888888888


Q ss_pred             hCCHHHHHHHHHHHHHhh
Q 017249          290 EGTFEAQERARTLLDLLR  307 (375)
Q Consensus       290 ~~~~~~~~~A~~~L~~l~  307 (375)
                      +.++.+++.+-.+|.++.
T Consensus       723 ~~Sl~vrek~~taL~~l~  740 (743)
T COG5369         723 KDSLIVREKIGTALENLR  740 (743)
T ss_pred             cCcHHHHHHHHHHHHhhh
Confidence            899999999999998864

>KOG1241 consensus Karyopherin (importin) beta 1 [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=98.25  E-value=0.00045  Score=67.72  Aligned_cols=319  Identities=13%  Similarity=0.125  Sum_probs=189.9

Q ss_pred             hHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh-cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           25 ALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAA-AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        25 ~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      +.+-.++.-.+  .++..++..|..+|.+-.... ..+-..=.+ .=++...++.-.+++.+++..|+.+|..+..-..+
T Consensus       172 ~iLtaIv~gmrk~e~s~~vRLaa~~aL~nsLef~-~~nF~~E~ern~iMqvvcEatq~~d~~i~~aa~~ClvkIm~LyY~  250 (859)
T KOG1241|consen  172 DILTAIVQGMRKEETSAAVRLAALNALYNSLEFT-KANFNNEMERNYIMQVVCEATQSPDEEIQVAAFQCLVKIMSLYYE  250 (859)
T ss_pred             HHHHHHHhhccccCCchhHHHHHHHHHHHHHHHH-HHhhccHhhhceeeeeeeecccCCcHHHHHHHHHHHHHHHHHHHH
Confidence            34445554444  456788999999998876554 222222122 23466777888899999999999999999864333


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC------------CChh----HH---HhcCChHHHHHHhcc
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA------------PNKP----AI---AASGAAPLLVQILHS  162 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~------------~~~~----~i---~~~~~l~~L~~lL~~  162 (375)
                      .-..-.....+..-+.-+++.++++...++..-.+++...            .+.+    .+   .-.+.+|.|+++|..
T Consensus       251 ~m~~yM~~alfaitl~amks~~deValQaiEFWsticeEEiD~~~e~~e~~d~~~~p~~~~fa~~a~~~v~P~Ll~~L~k  330 (859)
T KOG1241|consen  251 FMEPYMEQALFAITLAAMKSDNDEVALQAIEFWSTICEEEIDLAIEYGEAVDQGLPPSSKYFARQALQDVVPVLLELLTK  330 (859)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCchhhHHHHHHHhHhhHHHHHHHHh
Confidence            3333333334555566778889998888887666666211            0111    11   123678888888865


Q ss_pred             CC-------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCCh--hhhHHH
Q 017249          163 GS-------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK--KYSKFAEKATALLEILSSSE--EGRIAI  231 (375)
Q Consensus       163 ~~-------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~--~~~~~~  231 (375)
                      .+       -..-..|-.||.-.+..       +....+++++.++...-  ++-.-++.+.-+++.+-..+  ...+.+
T Consensus       331 qde~~d~DdWnp~kAAg~CL~l~A~~-------~~D~Iv~~Vl~Fiee~i~~pdwr~reaavmAFGSIl~gp~~~~Lt~i  403 (859)
T KOG1241|consen  331 QDEDDDDDDWNPAKAAGVCLMLFAQC-------VGDDIVPHVLPFIEENIQNPDWRNREAAVMAFGSILEGPEPDKLTPI  403 (859)
T ss_pred             CCCCcccccCcHHHHHHHHHHHHHHH-------hcccchhhhHHHHHHhcCCcchhhhhHHHHHHHhhhcCCchhhhhHH
Confidence            31       12344444444444432       22335555555555321  12244677777777666543  334445


Q ss_pred             hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +  .++++.++.++.+++-.++..+.|+|..++.......-........++.++.-+. ..|++-.+++|++-.|.++-.
T Consensus       404 V--~qalp~ii~lm~D~sl~VkdTaAwtlgrI~d~l~e~~~n~~~l~~~l~~l~~gL~-DePrva~N~CWAf~~Laea~~  480 (859)
T KOG1241|consen  404 V--IQALPSIINLMSDPSLWVKDTAAWTLGRIADFLPEAIINQELLQSKLSALLEGLN-DEPRVASNVCWAFISLAEAAY  480 (859)
T ss_pred             H--hhhhHHHHHHhcCchhhhcchHHHHHHHHHhhchhhcccHhhhhHHHHHHHHHhh-hCchHHHHHHHHHHHHHHHHH
Confidence            4  5899999999999888889999999999998763221122222344455554443 569999999999999985442


Q ss_pred             hhh-------hhhhhHHHHHHHHh---hcCCC-hHHHHHHHHHHHHHHHHHHHH
Q 017249          312 EKR-------LSSSVLEKIVYDIA---ARVDG-ADKAAETAKRLLQDMVQRSME  354 (375)
Q Consensus       312 ~~~-------~~~g~~~~l~~~l~---~~~~g-~~~~~~~a~~~l~~l~~~s~~  354 (375)
                      +..       ....+.++++..|.   ...|| ....+..|=.+|..|++.|.+
T Consensus       481 eA~~s~~qt~~~t~~y~~ii~~Ll~~tdr~dgnqsNLR~AAYeALmElIk~st~  534 (859)
T KOG1241|consen  481 EAAVSNGQTDPATPFYEAIIGSLLKVTDRADGNQSNLRSAAYEALMELIKNSTD  534 (859)
T ss_pred             HhccCCCCCCccchhHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHcCcH
Confidence            211       11123334444332   11233 233456666777777766443

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=0.0012  Score=61.07  Aligned_cols=240  Identities=14%  Similarity=0.068  Sum_probs=171.5

Q ss_pred             HHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---------hhHHHHHHcCChHHH
Q 017249           45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE---------RNKVKIATAGAIPPL  115 (375)
Q Consensus        45 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---------~~r~~i~~~g~i~~L  115 (375)
                      .+.-+.-++..+  .....+++.++|+.|+++|.+.+.++....+..|..|+..+.         ..-..+++.++++.|
T Consensus       104 ~IQ~mhvlAt~P--dLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLL  181 (536)
T KOG2734|consen  104 IIQEMHVLATMP--DLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALL  181 (536)
T ss_pred             HHHHHHhhhcCh--HHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHH
Confidence            444555555554  777789999999999999999999999999999999996432         234567778899999


Q ss_pred             HHhhcCCChHH------HHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC--CHHHHHHHHHHHHHhccC-CCCc
Q 017249          116 VELLKFQNGTL------RELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG--SVQGRVDAVTALHYLSTC-KENS  185 (375)
Q Consensus       116 v~lL~~~~~~~------~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~~~-~~~~  185 (375)
                      ++-++.-+..+      ...++..+-|+....+ ....+++.|.+.+|+.-+...  -.....+|...|.-+-.+ ++++
T Consensus       182 vqnveRLdEsvkeea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~  261 (536)
T KOG2734|consen  182 VQNVERLDESVKEEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENR  261 (536)
T ss_pred             HHHHHHhhhcchhhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhh
Confidence            99886544333      4566777777776544 455667778888888865543  245577888888877755 4577


Q ss_pred             hhhhhcCCcHHHHHHhhh----c---ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          186 SPILDATAVPPLINLLKD----C---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~----~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      .....-.++..+++-+.-    +   .+...+.++...+|+.+...+.++...+. ..+++...-+++. ....+..+++
T Consensus       262 ~~~~~l~GiD~lL~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~-~EGlqLm~Lmlr~-Kk~sr~Salk  339 (536)
T KOG2734|consen  262 KLLGPLDGIDVLLRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLK-GEGLQLMNLMLRE-KKVSRGSALK  339 (536)
T ss_pred             hhhcCcccHHHHHhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhc-cccHHHHHHHHHH-HHHhhhhHHH
Confidence            777777888888775542    1   11335677788888888889999999994 5566655544544 5567788999


Q ss_pred             HHHHhcccCc-HHHHHHHHHcCChHHHHHHh
Q 017249          259 ALLSLCQSCR-DKYRQLILKEGAIPGLLRLT  288 (375)
Q Consensus       259 ~L~~l~~~~~-~~~~~~l~~~g~v~~L~~ll  288 (375)
                      +|-....+.. ...+..+++..++....-+.
T Consensus       340 vLd~am~g~~gt~~C~kfVe~lGLrtiF~~F  370 (536)
T KOG2734|consen  340 VLDHAMFGPEGTPNCNKFVEILGLRTIFPLF  370 (536)
T ss_pred             HHHHHHhCCCchHHHHHHHHHHhHHHHHHHH
Confidence            9988777653 25677788877777666533

>KOG0212 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.19  E-value=0.00043  Score=65.70  Aligned_cols=313  Identities=14%  Similarity=0.121  Sum_probs=194.2

Q ss_pred             HHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHH
Q 017249           40 ETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVE  117 (375)
Q Consensus        40 ~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~  117 (375)
                      .....++..+-.+.++- ...+. .|-=.+.+|.|-+.+...++..|...+.-|..|-.  .+-...+-- ...++-|+.
T Consensus       139 ~~V~~~aeLLdRLikdI-Vte~~~tFsL~~~ipLL~eriy~~n~~tR~flv~Wl~~Lds--~P~~~m~~yl~~~ldGLf~  215 (675)
T KOG0212|consen  139 QNVRGGAELLDRLIKDI-VTESASTFSLPEFIPLLRERIYVINPMTRQFLVSWLYVLDS--VPDLEMISYLPSLLDGLFN  215 (675)
T ss_pred             cccccHHHHHHHHHHHh-ccccccccCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhc--CCcHHHHhcchHHHHHHHH
Confidence            33445666666665554 11111 23223566666667777788888888887777754  233333332 567788999


Q ss_pred             hhcCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHH
Q 017249          118 LLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPP  196 (375)
Q Consensus       118 lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~  196 (375)
                      +|+.++++++..+=.++.++-..-.+.+.. .-...++.++.-+.++++.++..|+.-|.....-+.......-+|.+..
T Consensus       216 ~LsD~s~eVr~~~~t~l~~fL~eI~s~P~s~d~~~~i~vlv~~l~ss~~~iq~~al~Wi~efV~i~g~~~l~~~s~il~~  295 (675)
T KOG0212|consen  216 MLSDSSDEVRTLTDTLLSEFLAEIRSSPSSMDYDDMINVLVPHLQSSEPEIQLKALTWIQEFVKIPGRDLLLYLSGILTA  295 (675)
T ss_pred             HhcCCcHHHHHHHHHHHHHHHHHHhcCccccCcccchhhccccccCCcHHHHHHHHHHHHHHhcCCCcchhhhhhhhhhh
Confidence            999999999987777777765433333333 3356788899999999999998887777766554444444444566666


Q ss_pred             HHHHhhhcccchHHHHHH---HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHH
Q 017249          197 LINLLKDCKKYSKFAEKA---TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ  273 (375)
Q Consensus       197 Lv~ll~~~~~~~~~~~~a---~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~  273 (375)
                      ++..+.+... ....+.+   -..+..++..+..... +.-...+..|..++.+.....+-.++..+..+-...+.+  -
T Consensus       296 iLpc~s~~e~-~~i~~~a~~~n~~l~~l~s~~~~~~~-id~~~ii~vl~~~l~~~~~~tri~~L~Wi~~l~~~~p~q--l  371 (675)
T KOG0212|consen  296 ILPCLSDTEE-MSIKEYAQMVNGLLLKLVSSERLKEE-IDYGSIIEVLTKYLSDDREETRIAVLNWIILLYHKAPGQ--L  371 (675)
T ss_pred             cccCCCCCcc-ccHHHHHHHHHHHHHHHHhhhhhccc-cchHHHHHHHHHHhhcchHHHHHHHHHHHHHHHhhCcch--h
Confidence            6666665432 1233322   2234445555544444 323346788889999999999999999998887765322  1


Q ss_pred             HHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH----
Q 017249          274 LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV----  349 (375)
Q Consensus       274 ~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~----  349 (375)
                      ........+.|+.-+.+.+..+-..+..+|+.++.++...    +..+-+...|..-...+.-...++.=+++.|.    
T Consensus       372 ~~h~~~if~tLL~tLsd~sd~vvl~~L~lla~i~~s~~~~----~~~~fl~sLL~~f~e~~~~l~~Rg~lIIRqlC~lL~  447 (675)
T KOG0212|consen  372 LVHNDSIFLTLLKTLSDRSDEVVLLALSLLASICSSSNSP----NLRKFLLSLLEMFKEDTKLLEVRGNLIIRQLCLLLN  447 (675)
T ss_pred             hhhccHHHHHHHHhhcCchhHHHHHHHHHHHHHhcCcccc----cHHHHHHHHHHHHhhhhHHHHhhhhHHHHHHHHHhC
Confidence            2223668899999999999999999999999999887432    22332222222212222223344444444443    


Q ss_pred             HHHHHHhHHHHHHH
Q 017249          350 QRSMELSMTRIQQR  363 (375)
Q Consensus       350 ~~s~~~~~~~~~~~  363 (375)
                      ..-.+..+..|+.|
T Consensus       448 aE~IYr~~a~ILe~  461 (675)
T KOG0212|consen  448 AERIYRSIADILER  461 (675)
T ss_pred             HHHHHHHHHHHHhc
Confidence            23455555555554

>PF14664 RICTOR_N: Rapamycin-insensitive companion of mTOR, N-term

Probab=98.14  E-value=0.00054  Score=64.07  Aligned_cols=249  Identities=15%  Similarity=0.054  Sum_probs=169.5

Q ss_pred             HHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHH
Q 017249           49 IRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTL  126 (375)
Q Consensus        49 l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~  126 (375)
                      |..+.+.. +..+..+.-....+.+..++-+++.+++-.+.++++.+.. ++..-..+.+.+.--.++.-|...  +..-
T Consensus         7 Lv~l~~~~-p~l~~~~~~~~~~~~i~~~lL~~~~~vraa~yRilRy~i~-d~~~l~~~~~l~id~~ii~SL~~~~~~~~E   84 (371)
T PF14664_consen    7 LVDLLKRH-PTLKYDLVLSFFGERIQCMLLSDSKEVRAAGYRILRYLIS-DEESLQILLKLHIDIFIIRSLDRDNKNDVE   84 (371)
T ss_pred             HHHHHHhC-chhhhhhhHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHc-CHHHHHHHHHcCCchhhHhhhcccCCChHH
Confidence            34444444 4555554444455555555555559999999999999998 566777777777655666666554  4556


Q ss_pred             HHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhccc
Q 017249          127 RELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK  206 (375)
Q Consensus       127 ~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~  206 (375)
                      |++|+..+..+.....+... ...+.+..++.+..+.+...+..|+.+|+.|+..+  ...+...|++..|++.+.++..
T Consensus        85 R~QALkliR~~l~~~~~~~~-~~~~vvralvaiae~~~D~lr~~cletL~El~l~~--P~lv~~~gG~~~L~~~l~d~~~  161 (371)
T PF14664_consen   85 REQALKLIRAFLEIKKGPKE-IPRGVVRALVAIAEHEDDRLRRICLETLCELALLN--PELVAECGGIRVLLRALIDGSF  161 (371)
T ss_pred             HHHHHHHHHHHHHhcCCccc-CCHHHHHHHHHHHhCCchHHHHHHHHHHHHHHhhC--HHHHHHcCCHHHHHHHHHhccH
Confidence            88999999988776443322 25678899999999999999999999999998653  3455678999999999988543


Q ss_pred             chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC-------Ch--HHHHHHHHHHHHhc-ccCcHHHHHHHH
Q 017249          207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG-------SL--VSTQHAVGALLSLC-QSCRDKYRQLIL  276 (375)
Q Consensus       207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-------~~--~~~~~a~~~L~~l~-~~~~~~~~~~l~  276 (375)
                        .+.+..+.++..+-.+|..|+.+.. .--+..++.-+.+.       +.  ..-..+..++..+- ...+   .-.+.
T Consensus       162 --~~~~~l~~~lL~lLd~p~tR~yl~~-~~dL~~l~apftd~~~~~~~~~~~~~~l~~s~~ai~~~LrsW~G---Ll~l~  235 (371)
T PF14664_consen  162 --SISESLLDTLLYLLDSPRTRKYLRP-GFDLESLLAPFTDFHYRKIKDDRELERLQASAKAISTLLRSWPG---LLYLS  235 (371)
T ss_pred             --hHHHHHHHHHHHHhCCcchhhhhcC-CccHHHHHHhhhhhhccccccchHHHHHHHHHHHHHHHHhcCCc---eeeee
Confidence              3678888889999999999998873 33355555444322       11  12223333333332 2221   11111


Q ss_pred             H--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          277 K--EGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       277 ~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      .  ..++..|+..+..+++++|+....++.-+-+
T Consensus       236 ~~~~~~lksLv~~L~~p~~~ir~~Ildll~dllr  269 (371)
T PF14664_consen  236 MNDFRGLKSLVDSLRLPNPEIRKAILDLLFDLLR  269 (371)
T ss_pred             cCCchHHHHHHHHHcCCCHHHHHHHHHHHHHHHC
Confidence            1  2578889999999999999999997776654

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=98.12  E-value=0.0004  Score=61.49  Aligned_cols=229  Identities=10%  Similarity=-0.010  Sum_probs=154.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhccChhhHHHHH-HcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHh-cCCh
Q 017249           78 VSPNLDAIESSLLALLNLAVRNERNKVKIA-TAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAA-SGAA  153 (375)
Q Consensus        78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~-~~~l  153 (375)
                      ..-++-.+--|++++.++.. .++.|..+- +...-..++..+++.  ...++.+.+-++|-++.++...+.+-. ...+
T Consensus       159 Q~i~~lTrlfav~cl~~l~~-~~e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf~~~~aqdi~K~~dli  237 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEF-DVEKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTFSKECAQDIDKMDDLI  237 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            33344567889999999998 466665544 455667888888765  678999999999999988776544432 3456


Q ss_pred             HHHHHHhccC-CHHHHHHHHHHHHHhccC-C-CCchhhhhcCCcHHHHHHhhhcc-cchHHHHHHHHHH-----------
Q 017249          154 PLLVQILHSG-SVQGRVDAVTALHYLSTC-K-ENSSPILDATAVPPLINLLKDCK-KYSKFAEKATALL-----------  218 (375)
Q Consensus       154 ~~L~~lL~~~-~~~~~~~a~~~L~~L~~~-~-~~~~~i~~~g~i~~Lv~ll~~~~-~~~~~~~~a~~~L-----------  218 (375)
                      ..|+.+.+.. ...+.+-+++.+.|++.. + +....+.-.|-+.+.+++|.... .++.+....-.+=           
T Consensus       238 ~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~pK~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k~l~  317 (432)
T COG5231         238 NDLIAIVKERAKEKVLRLCCGIVANVLDKSPKGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTKKLC  317 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhhhhh
Confidence            6777777765 356788899999999873 2 44555555565666666665432 1222221111110           


Q ss_pred             ------H-----HhhCChh---------hhHHHhh-ccCcHHHHHHHhccCChH-HHHHHHHHHHHhcccCcHHHHHHHH
Q 017249          219 ------E-----ILSSSEE---------GRIAITN-SDGGILTLVETVEDGSLV-STQHAVGALLSLCQSCRDKYRQLIL  276 (375)
Q Consensus       219 ------~-----~l~~~~~---------~~~~~~~-~~g~v~~Lv~lL~~~~~~-~~~~a~~~L~~l~~~~~~~~~~~l~  276 (375)
                            .     -++-+|.         |...+.. ....+..|.++++...+. .-..||.-+..+.... |+.+..+.
T Consensus       318 ~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~-PE~~~vl~  396 (432)
T COG5231         318 IFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRAS-PEINAVLS  396 (432)
T ss_pred             HHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhC-chHHHHHH
Confidence                  0     1122222         2233331 224578888999876554 4456777788877776 68889999


Q ss_pred             HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          277 KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       277 ~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      +.|+=+.++.++.+++++++.+|..++..|-.
T Consensus       397 Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         397 KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            99999999999999999999999999887743

>KOG2734 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.09  E-value=0.0017  Score=59.97  Aligned_cols=249  Identities=14%  Similarity=0.094  Sum_probs=182.7

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC----C----hhhHHHHHhcCChHHHHHhhCCCC----
Q 017249           14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKS----S----LKTRSEFAAAGVVQPLVLMLVSPN----   81 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~----~----~~~~~~~~~~g~v~~Lv~~L~~~~----   81 (375)
                      -+.--..+.+-++++.|+.+|...+.++....+..+..+...+    +    +...+.+++.++++.|++.+..=+    
T Consensus       114 ~PdLYp~lveln~V~slL~LLgHeNtDI~iavvdLLqELTD~Dv~~es~egAevLidaLvdg~vlaLLvqnveRLdEsvk  193 (536)
T KOG2734|consen  114 MPDLYPILVELNAVQSLLELLGHENTDIAIAVVDLLQELTDEDVLYESEEGAEVLIDALVDGQVLALLVQNVERLDESVK  193 (536)
T ss_pred             ChHHHHHHHHhccHHHHHHHhcCCCchhHHHHHHHHHHhhhhcccccccccHHHHHHHHHhccHHHHHHHHHHHhhhcch
Confidence            3444456778889999999999999999999999999997543    1    245667788899999998775432    


Q ss_pred             --HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHH
Q 017249           82 --LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLL  156 (375)
Q Consensus        82 --~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L  156 (375)
                        ..-...++..+-|+..-.+.....+++.|.+..|+.-+...  -..-...|..+|.-+..+.. ++.....-.++..+
T Consensus       194 eea~gv~~~L~vveNlv~~r~~~~~~~~e~~ll~WLL~rl~~k~~f~aNk~YasEiLaillq~s~e~~~~~~~l~GiD~l  273 (536)
T KOG2734|consen  194 EEADGVHNTLAVVENLVEVRPAICTEIVEQGLLSWLLKRLKGKAAFDANKQYASEILAILLQNSDENRKLLGPLDGIDVL  273 (536)
T ss_pred             hhhhhhHHHHHHHHHHHhccHHHHHHHHHhhHHHHHHHHHhcccCcchhHHHHHHHHHHHhccCchhhhhhcCcccHHHH
Confidence              34466778888888887888888888999888888754332  34456788888888877754 77777888999998


Q ss_pred             HHHhc---cCC------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh--
Q 017249          157 VQILH---SGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE--  225 (375)
Q Consensus       157 ~~lL~---~~~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~--  225 (375)
                      ++-+.   ..+      .+..++...+|+.+...+.++..++...+++...-+++...   ..+..++++|-....++  
T Consensus       274 L~~la~yk~~dP~~~~E~EmmeNLFdcLCs~lm~~~nr~~Fl~~EGlqLm~Lmlr~Kk---~sr~SalkvLd~am~g~~g  350 (536)
T KOG2734|consen  274 LRQLAVYKRHDPATVDEEEMMENLFDCLCSLLMAPANRERFLKGEGLQLMNLMLREKK---VSRGSALKVLDHAMFGPEG  350 (536)
T ss_pred             HhhcchhhccCCCCcCHHHHHHHHHHHHHHHhcChhhhhhhhccccHHHHHHHHHHHH---HhhhhHHHHHHHHHhCCCc
Confidence            88762   122      35677888888888888999999999888887777776642   34567888888776654  


Q ss_pred             -hhhHHHhhccCcHHHHHHHhc-c---------CChHHHHHHHHHHHHhccc
Q 017249          226 -EGRIAITNSDGGILTLVETVE-D---------GSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       226 -~~~~~~~~~~g~v~~Lv~lL~-~---------~~~~~~~~a~~~L~~l~~~  266 (375)
                       +++...+ +.++...++.+.. .         .....-++.+.+|+.+-.+
T Consensus       351 t~~C~kfV-e~lGLrtiF~~FMk~p~k~~~~~~t~~e~eEhv~siiaSl~~~  401 (536)
T KOG2734|consen  351 TPNCNKFV-EILGLRTIFPLFMKTPLKRKKRKISADEHEEHVCSILASLLRN  401 (536)
T ss_pred             hHHHHHHH-HHHhHHHHHHHHhhCccchhcccCcHHHHHHHHHHHHHHHHHh
Confidence             5666777 5678887776653 1         1244556777777766553

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=98.07  E-value=0.00014  Score=58.60  Aligned_cols=131  Identities=14%  Similarity=0.156  Sum_probs=106.5

Q ss_pred             hHHHhcCChHHHHHHhccCC------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249          145 PAIAASGAAPLLVQILHSGS------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL  218 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L  218 (375)
                      ..+...+|++.|++++.++.      ......++.++..|....-..+...+...+..++..+.....+..+...++.+|
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l~~~FI~Kia~~Vn~~~~d~~i~q~sLaIL   84 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTLSDSFIKKIASYVNSSAMDASILQRSLAIL   84 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhccHHHHHHHHHHHccccccchHHHHHHHHH
Confidence            34567899999999998876      377888999999999887666677788899999999987665678889999999


Q ss_pred             HHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249          219 EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI  275 (375)
Q Consensus       219 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l  275 (375)
                      .++..+.......+...=-++.|+.+|...++.++.+|+..+-.|....++.-++.+
T Consensus        85 Es~Vl~S~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA~~~~r~~i  141 (160)
T PF11841_consen   85 ESIVLNSPKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKADDSKRKEI  141 (160)
T ss_pred             HHHHhCCHHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcCChHHHHHH
Confidence            999987777555664566789999999999999999999999888776654444444

>COG1413 FOG: HEAT repeat [Energy production and conversion]

Probab=98.04  E-value=0.0013  Score=61.16  Aligned_cols=187  Identities=29%  Similarity=0.290  Sum_probs=137.0

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      ..++.++..+.+.++.++..|+..+..+....            .++.+..+|.+.++.++..++.+|+.+-..      
T Consensus        43 ~~~~~~~~~l~~~~~~vr~~aa~~l~~~~~~~------------av~~l~~~l~d~~~~vr~~a~~aLg~~~~~------  104 (335)
T COG1413          43 EAADELLKLLEDEDLLVRLSAAVALGELGSEE------------AVPLLRELLSDEDPRVRDAAADALGELGDP------  104 (335)
T ss_pred             hhHHHHHHHHcCCCHHHHHHHHHHHhhhchHH------------HHHHHHHHhcCCCHHHHHHHHHHHHccCCh------
Confidence            46778888888888888888888865543322            589999999999999999999988877542      


Q ss_pred             HHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCH------------HHHHHH
Q 017249          105 KIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV------------QGRVDA  171 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~------------~~~~~a  171 (375)
                           ..++.|+.++. +.+..+|..++.+|..+-.          ...+..++..+.+...            .++..+
T Consensus       105 -----~a~~~li~~l~~d~~~~vR~~aa~aL~~~~~----------~~a~~~l~~~l~~~~~~~a~~~~~~~~~~~r~~a  169 (335)
T COG1413         105 -----EAVPPLVELLENDENEGVRAAAARALGKLGD----------ERALDPLLEALQDEDSGSAAAALDAALLDVRAAA  169 (335)
T ss_pred             -----hHHHHHHHHHHcCCcHhHHHHHHHHHHhcCc----------hhhhHHHHHHhccchhhhhhhhccchHHHHHHHH
Confidence                 24788999998 5799999999999998733          4447888888877652            234444


Q ss_pred             HHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249          172 VTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV  251 (375)
Q Consensus       172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~  251 (375)
                      ...|..+          .....++.+...+.+..  ..++..+...|..+....         ....+.+...+.+.+..
T Consensus       170 ~~~l~~~----------~~~~~~~~l~~~l~~~~--~~vr~~Aa~aL~~~~~~~---------~~~~~~l~~~~~~~~~~  228 (335)
T COG1413         170 AEALGEL----------GDPEAIPLLIELLEDED--ADVRRAAASALGQLGSEN---------VEAADLLVKALSDESLE  228 (335)
T ss_pred             HHHHHHc----------CChhhhHHHHHHHhCch--HHHHHHHHHHHHHhhcch---------hhHHHHHHHHhcCCCHH
Confidence            4444433          33457778888888763  367777877777665443         24667788888888888


Q ss_pred             HHHHHHHHHHHhcc
Q 017249          252 STQHAVGALLSLCQ  265 (375)
Q Consensus       252 ~~~~a~~~L~~l~~  265 (375)
                      ++..++..|..+-.
T Consensus       229 vr~~~~~~l~~~~~  242 (335)
T COG1413         229 VRKAALLALGEIGD  242 (335)
T ss_pred             HHHHHHHHhcccCc
Confidence            88888888877644

>KOG1242 consensus Protein containing adaptin N-terminal region [Translation, ribosomal structure and biogenesis]

Probab=98.00  E-value=0.0019  Score=62.31  Aligned_cols=231  Identities=16%  Similarity=0.146  Sum_probs=141.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249           36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL  115 (375)
Q Consensus        36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L  115 (375)
                      +..+.++..|..+...+...-+....+     -.++.++.-+..........++..|+.++. .....-.......+|.+
T Consensus       227 d~~~~Vr~Aa~~a~kai~~~~~~~aVK-----~llpsll~~l~~~kWrtK~aslellg~m~~-~ap~qLs~~lp~iiP~l  300 (569)
T KOG1242|consen  227 DKINKVREAAVEAAKAIMRCLSAYAVK-----LLLPSLLGSLLEAKWRTKMASLELLGAMAD-CAPKQLSLCLPDLIPVL  300 (569)
T ss_pred             ccchhhhHHHHHHHHHHHHhcCcchhh-----HhhhhhHHHHHHHhhhhHHHHHHHHHHHHH-hchHHHHHHHhHhhHHH
Confidence            445666666555555544333111111     124555544444466778899999998887 44555666678899999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcH
Q 017249          116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVP  195 (375)
Q Consensus       116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~  195 (375)
                      .+.|-+..+++++.+..++..+..--+|...   ...+|.|++.+.+++..+.. +...|..=+.     ...++...+.
T Consensus       301 sevl~DT~~evr~a~~~~l~~~~svidN~dI---~~~ip~Lld~l~dp~~~~~e-~~~~L~~ttF-----V~~V~~psLa  371 (569)
T KOG1242|consen  301 SEVLWDTKPEVRKAGIETLLKFGSVIDNPDI---QKIIPTLLDALADPSCYTPE-CLDSLGATTF-----VAEVDAPSLA  371 (569)
T ss_pred             HHHHccCCHHHHHHHHHHHHHHHHhhccHHH---HHHHHHHHHHhcCcccchHH-HHHhhcceee-----eeeecchhHH
Confidence            9999999999999999999999877666552   34578888888887644322 2222221111     1112233444


Q ss_pred             HHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH----HhccCChHHHHHHHHHHHHhcccCcH
Q 017249          196 PLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVE----TVEDGSLVSTQHAVGALLSLCQSCRD  269 (375)
Q Consensus       196 ~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~----lL~~~~~~~~~~a~~~L~~l~~~~~~  269 (375)
                      .++-++..+..  +..+.+.+..++.|+|.--++...+.   ..++.|++    .+.+..|++|..+.++|+.+-.....
T Consensus       372 lmvpiL~R~l~eRst~~kr~t~~IidNm~~LveDp~~la---pfl~~Llp~lk~~~~d~~PEvR~vaarAL~~l~e~~g~  448 (569)
T KOG1242|consen  372 LMVPILKRGLAERSTSIKRKTAIIIDNMCKLVEDPKDLA---PFLPSLLPGLKENLDDAVPEVRAVAARALGALLERLGE  448 (569)
T ss_pred             HHHHHHHHHHhhccchhhhhHHHHHHHHHHhhcCHHHHh---hhHHHHhhHHHHHhcCCChhHHHHHHHHHHHHHHHHHh
Confidence            44545443211  22456788999999997654444433   34555554    44556799999999999877654321


Q ss_pred             HHHHHHHHcCChHHHHHHhh
Q 017249          270 KYRQLILKEGAIPGLLRLTV  289 (375)
Q Consensus       270 ~~~~~l~~~g~v~~L~~ll~  289 (375)
                         ..+  .+.+|.+.+...
T Consensus       449 ---~~f--~d~~p~l~e~~~  463 (569)
T KOG1242|consen  449 ---VSF--DDLIPELSETLT  463 (569)
T ss_pred             ---hcc--cccccHHHHhhc
Confidence               111  555566665553

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.99  E-value=0.00047  Score=69.76  Aligned_cols=224  Identities=16%  Similarity=0.102  Sum_probs=167.5

Q ss_pred             HHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc
Q 017249           41 TKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK  120 (375)
Q Consensus        41 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~  120 (375)
                      -+..|+..|..+..-. +=....-..-|+.|..+++|.++-.+++.--+-+=..+-.-++.++..+++.++-..++++|.
T Consensus       486 HRlRAL~LL~RFLDlG-pWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~  564 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLG-PWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLD  564 (1387)
T ss_pred             HHHHHHHHHHHHhccc-hhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEec
Confidence            3455777777776666 334444556699999999999998887776555555544446889999999999999999997


Q ss_pred             C-C--ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccC-CCCchhhhhcCCc
Q 017249          121 F-Q--NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTC-KENSSPILDATAV  194 (375)
Q Consensus       121 ~-~--~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i  194 (375)
                      . .  +++-+..|+.+|..+..+-. ++......+.+..-+..|.++ .+-.+..++-+|..|-.+ ++.+..-.+.++.
T Consensus       565 ~~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~~~Arw~G~r~~Ah  644 (1387)
T KOG1517|consen  565 PSQAIPPEQRTMAAFVLAVIVRNFKLGQKACLNGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDYDEARWSGRRDNAH  644 (1387)
T ss_pred             CcCCCCHHHHHHHHHHHHHHHcccchhHHHhccccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhcchhhhccccccHH
Confidence            7 3  56788888889999887744 677777888899888999885 577899999999999866 4566666678999


Q ss_pred             HHHHHHhhhcccchHHHHHHHHHHHHhhCC-----hhhhHHH-----------hhccCcH---HHHHHHhccCChHHHHH
Q 017249          195 PPLINLLKDCKKYSKFAEKATALLEILSSS-----EEGRIAI-----------TNSDGGI---LTLVETVEDGSLVSTQH  255 (375)
Q Consensus       195 ~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-----~~~~~~~-----------~~~~g~v---~~Lv~lL~~~~~~~~~~  255 (375)
                      +.|..+|.++  .+.++.+|..+|+.+-.+     ++....+           ..+.-..   ..++.+++++++.++.+
T Consensus       645 ekL~~~LsD~--vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~e  722 (1387)
T KOG1517|consen  645 EKLILLLSDP--VPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTE  722 (1387)
T ss_pred             HHHHHHhcCc--cHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHH
Confidence            9999999986  457888899999877653     2221111           1122222   26777788999999999


Q ss_pred             HHHHHHHhcccC
Q 017249          256 AVGALLSLCQSC  267 (375)
Q Consensus       256 a~~~L~~l~~~~  267 (375)
                      .+.+|..+..+.
T Consensus       723 v~v~ls~~~~g~  734 (1387)
T KOG1517|consen  723 VVVALSHFVVGY  734 (1387)
T ss_pred             HHHHHHHHHHhh
Confidence            999998887765

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.98  E-value=4.3e-05  Score=55.91  Aligned_cols=86  Identities=27%  Similarity=0.306  Sum_probs=69.3

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      ++.|++.| +++++.++..++++|.++-..            .+++.|+++++++++.++..|+++|+.+-.        
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~vr~~a~~aL~~i~~--------   60 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGDP------------EAIPALIELLKDEDPMVRRAAARALGRIGD--------   60 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTHH------------HHHHHHHHHHTSSSHHHHHHHHHHHHCCHH--------
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhCC--------
Confidence            57899999 789999999999999854211            238999999999999999999999998842        


Q ss_pred             HHHcCChHHHHHhhcCC-ChHHHHHHHHHHH
Q 017249          106 IATAGAIPPLVELLKFQ-NGTLRELAAAAIL  135 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~  135 (375)
                         ..+++.|.+++.+. +..++..|+.+|.
T Consensus        61 ---~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   61 ---PEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             ---HHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence               33788999998876 5566888888764

>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]

Probab=97.98  E-value=0.0007  Score=68.58  Aligned_cols=221  Identities=16%  Similarity=0.103  Sum_probs=157.6

Q ss_pred             HHHHHHHHhhcc-CCChhHH---HhcCChHHHHHHhccCCHHHHHHHHHHHHH-hccCCCCchhhhhcCCcHHHHHHhhh
Q 017249          129 LAAAAILTLSAA-APNKPAI---AASGAAPLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKD  203 (375)
Q Consensus       129 ~a~~~L~~Ls~~-~~~~~~i---~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~ll~~  203 (375)
                      +-+.+|.-|+.. +-+.+.+   ..-|+.|.++++|+++..+.+...+-.=.. |+.++.++..+++.++-...++++..
T Consensus       486 HRlRAL~LL~RFLDlGpWAV~LaLsVGIFPYVLKLLQS~a~ELrpiLVFIWAKILAvD~SCQ~dLvKe~g~~YF~~vL~~  565 (1387)
T KOG1517|consen  486 HRLRALVLLARFLDLGPWAVDLALSVGIFPYVLKLLQSSARELRPILVFIWAKILAVDPSCQADLVKENGYKYFLQVLDP  565 (1387)
T ss_pred             HHHHHHHHHHHHhccchhhhhhhhccchHHHHHHHhccchHhhhhhHHHHHHHHHhcCchhHHHHHhccCceeEEEEecC
Confidence            334445555443 2244444   367999999999999987766555433333 55667777788888777777777776


Q ss_pred             -cccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCC
Q 017249          204 -CKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGA  280 (375)
Q Consensus       204 -~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~  280 (375)
                       ...++.-+..|..+|..++. .+.+++..+ +.+.+...+.+|.++ .+.++..++-+|..|-.+- ++.++.=.+.++
T Consensus       566 ~~~~~~EqrtmaAFVLAviv~nf~lGQ~acl-~~~li~iCle~lnd~~~pLLrQW~~icLG~LW~d~-~~Arw~G~r~~A  643 (1387)
T KOG1517|consen  566 SQAIPPEQRTMAAFVLAVIVRNFKLGQKACL-NGNLIGICLEHLNDDPEPLLRQWLCICLGRLWEDY-DEARWSGRRDNA  643 (1387)
T ss_pred             cCCCCHHHHHHHHHHHHHHHcccchhHHHhc-cccHHHHHHHHhcCCccHHHHHHHHHHHHHHhhhc-chhhhccccccH
Confidence             33333556668888988886 578888888 578888888888875 6889999999999998876 467777788999


Q ss_pred             hHHHHHHhhhCCHHHHHHHHHHHHHhhcCC----hh--------------hhhhhh-hHHHHHHHHhhcCCChHHHHHHH
Q 017249          281 IPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE--------------KRLSSS-VLEKIVYDIAARVDGADKAAETA  341 (375)
Q Consensus       281 v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~----~~--------------~~~~~g-~~~~l~~~l~~~~~g~~~~~~~a  341 (375)
                      .+.|..++.+.-|+||-+|+.+|..+-+..    ++              +...+. +...++..+..-.+|++-.+..-
T Consensus       644 hekL~~~LsD~vpEVRaAAVFALgtfl~~~~d~fde~~~~~~~~~~l~~~~~~~E~~i~~~~~~ll~~vsdgsplvr~ev  723 (1387)
T KOG1517|consen  644 HEKLILLLSDPVPEVRAAAVFALGTFLSNGSDNFDEQTLVVEEEIDLDDERTSIEDLIIKGLMSLLALVSDGSPLVRTEV  723 (1387)
T ss_pred             HHHHHHHhcCccHHHHHHHHHHHHHHhcccccccchhhhhhhhhhcchhhhhhHHHHHHhhHHHHHHHHhccchHHHHHH
Confidence            999999999999999999999999886642    11              011122 22222233333379999998888


Q ss_pred             HHHHHHHHHH
Q 017249          342 KRLLQDMVQR  351 (375)
Q Consensus       342 ~~~l~~l~~~  351 (375)
                      .-.|.+++-.
T Consensus       724 ~v~ls~~~~g  733 (1387)
T KOG1517|consen  724 VVALSHFVVG  733 (1387)
T ss_pred             HHHHHHHHHh
Confidence            8888887643

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.97  E-value=0.0051  Score=60.94  Aligned_cols=161  Identities=13%  Similarity=0.157  Sum_probs=88.1

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh---cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh-HHH
Q 017249          156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD---ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAI  231 (375)
Q Consensus       156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~  231 (375)
                      ++++|.+++......-...|..++.+.+.-.-+.+   ...+..+..+..    ...++..|..+|+.+-.++++. +.+
T Consensus       257 lLriLGq~d~daSd~M~DiLaqvatntdsskN~GnAILYE~V~TI~~I~~----~~~LrvlainiLgkFL~n~d~NirYv  332 (866)
T KOG1062|consen  257 LLRILGQNDADASDLMNDILAQVATNTDSSKNAGNAILYECVRTIMDIRS----NSGLRVLAINILGKFLLNRDNNIRYV  332 (866)
T ss_pred             HHHHhcCCCccHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHhccC----CchHHHHHHHHHHHHhcCCccceeee
Confidence            34455566655555555666665544222111111   123333333322    2245566666666655443321 111


Q ss_pred             ---------hhccCcHH----HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHH
Q 017249          232 ---------TNSDGGIL----TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER  298 (375)
Q Consensus       232 ---------~~~~g~v~----~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~  298 (375)
                               -.+..+++    .+++.|++++..++..|+..+..|....+   ...     .+..|+.++...+++.+..
T Consensus       333 aLn~L~r~V~~d~~avqrHr~tIleCL~DpD~SIkrralELs~~lvn~~N---v~~-----mv~eLl~fL~~~d~~~k~~  404 (866)
T KOG1062|consen  333 ALNMLLRVVQQDPTAVQRHRSTILECLKDPDVSIKRRALELSYALVNESN---VRV-----MVKELLEFLESSDEDFKAD  404 (866)
T ss_pred             ehhhHHhhhcCCcHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhcccc---HHH-----HHHHHHHHHHhccHHHHHH
Confidence                     11233332    46677888888888888888888876542   222     3566788888778888877


Q ss_pred             HHHHHHHhhcCC-hh----------------hhhhhhhHHHHHHHHh
Q 017249          299 ARTLLDLLRDTP-QE----------------KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       299 A~~~L~~l~~~~-~~----------------~~~~~g~~~~l~~~l~  328 (375)
                      .+.-+..+.+.- |.                ..+...++..++.++.
T Consensus       405 ~as~I~~laEkfaP~k~W~idtml~Vl~~aG~~V~~dv~~nll~LIa  451 (866)
T KOG1062|consen  405 IASKIAELAEKFAPDKRWHIDTMLKVLKTAGDFVNDDVVNNLLRLIA  451 (866)
T ss_pred             HHHHHHHHHHhcCCcchhHHHHHHHHHHhcccccchhhHHHHHHHHh
Confidence            776555554422 21                2344557777777665

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.95  E-value=0.00038  Score=68.50  Aligned_cols=256  Identities=18%  Similarity=0.176  Sum_probs=175.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.++......|.+.+.-.--.+.+.+... +...     .+++..++.-..++++.++..|++.++.+..+  ...
T Consensus        48 SslF~dvvk~~~T~dlelKKlvyLYl~nYa~~~-P~~a-----~~avnt~~kD~~d~np~iR~lAlrtm~~l~v~--~i~  119 (734)
T KOG1061|consen   48 SSLFPDVVKCMQTRDLELKKLVYLYLMNYAKGK-PDLA-----ILAVNTFLKDCEDPNPLIRALALRTMGCLRVD--KIT  119 (734)
T ss_pred             HhhhHHHHhhcccCCchHHHHHHHHHHHhhccC-chHH-----HhhhhhhhccCCCCCHHHHHHHhhceeeEeeh--HHH
Confidence            345667777777777777777777888887777 3221     24566777777788899999999988877642  222


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                      ..+     +.++.+.+++.++.+|..++-+..++-.  .+.......|.++.|-+++.+.++.+..+|+.+|..+.....
T Consensus       120 ey~-----~~Pl~~~l~d~~~yvRktaa~~vakl~~--~~~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  120 EYL-----CDPLLKCLKDDDPYVRKTAAVCVAKLFD--IDPDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHH-----HHHHHHhccCCChhHHHHHHHHHHHhhc--CChhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            333     5589999999999999999888888744  344566678999999999999999999999999999986543


Q ss_pred             C-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          184 N-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       184 ~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      + -........+..++..+...+++..     +.+|.+++.. +..-..+.   ..+..+...|.+.++.+.-.++.++.
T Consensus       193 ~~~~~~l~~~~~~~lL~al~ec~EW~q-----i~IL~~l~~y~p~d~~ea~---~i~~r~~p~Lqh~n~avvlsavKv~l  264 (734)
T KOG1061|consen  193 SVNLLELNPQLINKLLEALNECTEWGQ-----IFILDCLAEYVPKDSREAE---DICERLTPRLQHANSAVVLSAVKVIL  264 (734)
T ss_pred             CCCcccccHHHHHHHHHHHHHhhhhhH-----HHHHHHHHhcCCCCchhHH---HHHHHhhhhhccCCcceEeehHHHHH
Confidence            2 2222333455566666666655433     3445555542 21112222   36677888888888888889999998


Q ss_pred             HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHH
Q 017249          262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDL  305 (375)
Q Consensus       262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~  305 (375)
                      .+..... . .....-...-++|+.++...+ ..+.-|..=+..
T Consensus       265 ~~~~~~~-~-~~~~~~~K~~~pl~tlls~~~-e~qyvaLrNi~l  305 (734)
T KOG1061|consen  265 QLVKYLK-Q-VNELLFKKVAPPLVTLLSSES-EIQYVALRNINL  305 (734)
T ss_pred             HHHHHHH-H-HHHHHHHHhcccceeeecccc-hhhHHHHhhHHH
Confidence            8877652 2 333444567778888777665 666665553333

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.86  E-value=0.00024  Score=62.19  Aligned_cols=182  Identities=21%  Similarity=0.210  Sum_probs=113.6

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhC-ChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249           35 INGDLETKIEAARDIRKVVKKS-SLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGA  111 (375)
Q Consensus        35 ~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~  111 (375)
                      .+.+++.+.+|+..|..+..+. +......+.+.  ..+..+...+.+....+...|+.++..++..-...-... -...
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~-~~~~   95 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPY-ADIL   95 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHH-HHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHH-HHHH
Confidence            4789999999999999998776 22333333332  567788888888778899999999999986433222222 2346


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCC-hHHHHHHhccCCHHHHHHHHHHHHHhccCCC-Cchhhh
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA-APLLVQILHSGSVQGRVDAVTALHYLSTCKE-NSSPIL  189 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~-l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~-~~~~i~  189 (375)
                      +|.|+..+.+....++..|..+|..+.......     ... ++.+...+.+.++.++..++..+..+...-. ....+-
T Consensus        96 l~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~-----~~~~~~~l~~~~~~Kn~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   96 LPPLLKKLGDSKKFIREAANNALDAIIESCSYS-----PKILLEILSQGLKSKNPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHHGGG---HHHHHHHHHHHHHHHTTS-H-------HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHHccccHHHHHHHHHHHHHHHHHCCcH-----HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            899999999999999999999999998865411     122 5667777888999999999999988765432 223322


Q ss_pred             hc----CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          190 DA----TAVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       190 ~~----g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      ..    ..++.+...+.+.  ++.++..|-.++..+...
T Consensus       171 ~~~~~~~l~~~l~~~l~D~--~~~VR~~Ar~~~~~l~~~  207 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDA--DPEVREAARECLWALYSH  207 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHHHHH
Confidence            22    3555666666665  557899898888888543

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>PF13646 HEAT_2: HEAT repeats; PDB: 1OYZ_A 3FGA_A 2PF4_C 2IAE_A 3B2A_A

Probab=97.86  E-value=6.3e-05  Score=55.00  Aligned_cols=86  Identities=30%  Similarity=0.370  Sum_probs=70.5

Q ss_pred             hHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249           70 VQPLVLML-VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA  148 (375)
Q Consensus        70 v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  148 (375)
                      |+.|++.| +++++.++..++++|+++-.  +         .+++.|+.+++++++.++..|+.+|..+          .
T Consensus         1 i~~L~~~l~~~~~~~vr~~a~~~L~~~~~--~---------~~~~~L~~~l~d~~~~vr~~a~~aL~~i----------~   59 (88)
T PF13646_consen    1 IPALLQLLQNDPDPQVRAEAARALGELGD--P---------EAIPALIELLKDEDPMVRRAAARALGRI----------G   59 (88)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHCCTH--H---------HHHHHHHHHHTSSSHHHHHHHHHHHHCC----------H
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHHHHcCC--H---------hHHHHHHHHHcCCCHHHHHHHHHHHHHh----------C
Confidence            57899988 88899999999999996642  1         3488999999999999999999999987          3


Q ss_pred             hcCChHHHHHHhccCC-HHHHHHHHHHHH
Q 017249          149 ASGAAPLLVQILHSGS-VQGRVDAVTALH  176 (375)
Q Consensus       149 ~~~~l~~L~~lL~~~~-~~~~~~a~~~L~  176 (375)
                      ....++.|.+++.+.+ ..++..|+.+|.
T Consensus        60 ~~~~~~~L~~~l~~~~~~~vr~~a~~aL~   88 (88)
T PF13646_consen   60 DPEAIPALIKLLQDDDDEVVREAAAEALG   88 (88)
T ss_dssp             HHHTHHHHHHHHTC-SSHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHcCCCcHHHHHHHHhhcC
Confidence            4668999999998764 556888887763

>KOG1059 consensus Vesicle coat complex AP-3, delta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.76  E-value=0.0088  Score=58.69  Aligned_cols=302  Identities=17%  Similarity=0.158  Sum_probs=181.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ...+|+|++.|.++|+.++..|+..|..|+..+ |.+.-     ..-|.+.++|.+. +-=+...-+...++|+--.|..
T Consensus       180 r~~FprL~EkLeDpDp~V~SAAV~VICELArKn-PknyL-----~LAP~ffkllttSsNNWmLIKiiKLF~aLtplEPRL  253 (877)
T KOG1059|consen  180 RPCFPRLVEKLEDPDPSVVSAAVSVICELARKN-PQNYL-----QLAPLFYKLLVTSSNNWVLIKLLKLFAALTPLEPRL  253 (877)
T ss_pred             hhhHHHHHHhccCCCchHHHHHHHHHHHHHhhC-Ccccc-----cccHHHHHHHhccCCCeehHHHHHHHhhccccCchh
Confidence            456899999999999999999999999999999 55533     3467788888543 3345667778888888766666


Q ss_pred             HHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHh--hccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249          103 KVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTL--SAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS  179 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~L--s~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~  179 (375)
                      ...+     +++|..++.+.. -.+...++.++...  +..-++... ...-++..|-.++.+.++..++-++.++..+.
T Consensus       254 gKKL-----ieplt~li~sT~AmSLlYECvNTVVa~s~s~g~~d~~a-siqLCvqKLr~fiedsDqNLKYlgLlam~KI~  327 (877)
T KOG1059|consen  254 GKKL-----IEPITELMESTVAMSLLYECVNTVVAVSMSSGMSDHSA-SIQLCVQKLRIFIEDSDQNLKYLGLLAMSKIL  327 (877)
T ss_pred             hhhh-----hhHHHHHHHhhHHHHHHHHHHHHheeehhccCCCCcHH-HHHHHHHHHhhhhhcCCccHHHHHHHHHHHHh
Confidence            5555     679999998764 34455555555433  222111111 12346778888889999999999999999887


Q ss_pred             cC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHHHHH
Q 017249          180 TC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQHAV  257 (375)
Q Consensus       180 ~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~  257 (375)
                      .. +.....     .-..+++.|.+.  +..++..|+..|..+..-. |..      .++..|+.++...+ ...+..-+
T Consensus       328 ktHp~~Vqa-----~kdlIlrcL~Dk--D~SIRlrALdLl~gmVskk-Nl~------eIVk~LM~~~~~ae~t~yrdell  393 (877)
T KOG1059|consen  328 KTHPKAVQA-----HKDLILRCLDDK--DESIRLRALDLLYGMVSKK-NLM------EIVKTLMKHVEKAEGTNYRDELL  393 (877)
T ss_pred             hhCHHHHHH-----hHHHHHHHhccC--CchhHHHHHHHHHHHhhhh-hHH------HHHHHHHHHHHhccchhHHHHHH
Confidence            53 222221     234566777765  4467777888888776322 222      24556666664333 46777777


Q ss_pred             HHHHHhcccCcHHHHHHHHH-cCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHH--HHhhcC--
Q 017249          258 GALLSLCQSCRDKYRQLILK-EGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVY--DIAARV--  331 (375)
Q Consensus       258 ~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~--~l~~~~--  331 (375)
                      .-+..+|+.++   -..+.+ +-.+..|+++.. .+...-..-+..++...-+.+.-+-+....+..|+.  .+....  
T Consensus       394 ~~II~iCS~sn---Y~~ItdFEWYlsVlveLa~l~~~~~G~~I~eQi~Dv~iRV~~iR~fsV~~m~~Ll~~~~~~~s~q~  470 (877)
T KOG1059|consen  394 TRIISICSQSN---YQYITDFEWYLSVLVELARLEGTRHGSLIAEQIIDVAIRVPSIRPFSVSQMSALLDDPLLAGSAQI  470 (877)
T ss_pred             HHHHHHhhhhh---hhhhhhHHHHHHHHHHHHhccccchhhHHHHHHHHHheechhhhHhHHHHHHHHHhchhhccchhh
Confidence            77777887653   334444 345567777665 333333344444444444433111122222222222  111011  


Q ss_pred             CC-hHHHHHHHHHHHHHHHHHHHH
Q 017249          332 DG-ADKAAETAKRLLQDMVQRSME  354 (375)
Q Consensus       332 ~g-~~~~~~~a~~~l~~l~~~s~~  354 (375)
                      ++ -...-..|++++..+.++.-+
T Consensus       471 n~~l~eVL~AaaWi~GEyse~ven  494 (877)
T KOG1059|consen  471 NSQLCEVLYAAAWILGEYSEFVEN  494 (877)
T ss_pred             ccchhHHHHHHHHHHHHHHHHhhC
Confidence            11 134456677777777665443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.75  E-value=0.024  Score=56.31  Aligned_cols=142  Identities=8%  Similarity=0.040  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC----------------cHHH-
Q 017249          209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC----------------RDKY-  271 (375)
Q Consensus       209 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~----------------~~~~-  271 (375)
                      .+..+++.+++.++....       ..+++..|+.+|.+. ..+|.-.+..+..++...                ++.. 
T Consensus       302 sVVmA~aql~y~lAP~~~-------~~~i~kaLvrLLrs~-~~vqyvvL~nIa~~s~~~~~lF~P~lKsFfv~ssDp~~v  373 (968)
T KOG1060|consen  302 SVVMAVAQLFYHLAPKNQ-------VTKIAKALVRLLRSN-REVQYVVLQNIATISIKRPTLFEPHLKSFFVRSSDPTQV  373 (968)
T ss_pred             HHHHHHHhHHHhhCCHHH-------HHHHHHHHHHHHhcC-CcchhhhHHHHHHHHhcchhhhhhhhhceEeecCCHHHH
Confidence            455677788888776542       235677888888653 334444444444443321                1111 


Q ss_pred             -------HHHHHHcC----ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHH
Q 017249          272 -------RQLILKEG----AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAET  340 (375)
Q Consensus       272 -------~~~l~~~g----~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~  340 (375)
                             ...++.++    ++.-+..++.+.+.++--.|+.++..|+...  .-+....+..|+..|.++   +...-..
T Consensus       374 k~lKleiLs~La~esni~~ILrE~q~YI~s~d~~faa~aV~AiGrCA~~~--~sv~~tCL~gLv~Llssh---de~Vv~e  448 (968)
T KOG1060|consen  374 KILKLEILSNLANESNISEILRELQTYIKSSDRSFAAAAVKAIGRCASRI--GSVTDTCLNGLVQLLSSH---DELVVAE  448 (968)
T ss_pred             HHHHHHHHHHHhhhccHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHhh--CchhhHHHHHHHHHHhcc---cchhHHH
Confidence                   11222333    3344445666666666666677777776554  345566888898888644   4667788


Q ss_pred             HHHHHHHHHHHHHHHhHHHHHHH
Q 017249          341 AKRLLQDMVQRSMELSMTRIQQR  363 (375)
Q Consensus       341 a~~~l~~l~~~s~~~~~~~~~~~  363 (375)
                      |.-.++.|++..+-+..+-|.|=
T Consensus       449 aV~vIk~Llq~~p~~h~~ii~~L  471 (968)
T KOG1060|consen  449 AVVVIKRLLQKDPAEHLEILFQL  471 (968)
T ss_pred             HHHHHHHHHhhChHHHHHHHHHH
Confidence            88999999988877776555543

>COG5369 Uncharacterized conserved protein [Function unknown]

Probab=97.75  E-value=0.00054  Score=64.72  Aligned_cols=199  Identities=10%  Similarity=0.045  Sum_probs=143.5

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccC
Q 017249           85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSG  163 (375)
Q Consensus        85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~  163 (375)
                      ..+++.+|..++++-.-.|.-+....+.++|+++|..++..+...+...++|+...-+ -+..+...+.+..|+.++.+.
T Consensus       406 ~~a~~l~LkS~SrSV~~LRTgL~d~~I~elLi~~Ls~Peimi~~~~t~~icn~vv~fsnL~~~fL~~~iIdvl~~~v~sK  485 (743)
T COG5369         406 FVAIVLFLKSMSRSVTFLRTGLLDYPIVELLIDALSNPEIMIEFPDTIDICNKVVPFSNLGAGFLEKSIIDVLVNLVMSK  485 (743)
T ss_pred             HHHHHHHHHHhhHHHHHHHhhccccchHHHHHHHhcCccceeeccchhhhhheeeeccchHHHHHHhhHHHHHHHHhhcc
Confidence            4456667777777555567778888899999999998877777788888999877655 467778899999999999999


Q ss_pred             CHHHHHHHHHHHHHhccCCC--CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh---hHHHhhccC--
Q 017249          164 SVQGRVDAVTALHYLSTCKE--NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG---RIAITNSDG--  236 (375)
Q Consensus       164 ~~~~~~~a~~~L~~L~~~~~--~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~---~~~~~~~~g--  236 (375)
                      +...+.+..|.+..+..+..  .+-.....-++..++.+..++.  -.+++.++.+|+|+..+..-   .+.+.....  
T Consensus       486 DdaLqans~wvlrHlmyncq~~ekf~~Lakig~~kvl~~~NDpc--~~vq~q~lQilrNftc~~~knEkskdv~~K~~p~  563 (743)
T COG5369         486 DDALQANSEWVLRHLMYNCQKNEKFKFLAKIGVEKVLSYTNDPC--FKVQHQVLQILRNFTCDTSKNEKSKDVFIKATPR  563 (743)
T ss_pred             hhhhhhcchhhhhhhhhcCcchhhhhhHHhcCHHHHHHHhcCcc--cccHHHHHHHHHhcccccccccccceeEEecChH
Confidence            99999999999999987643  3455667778999999987653  36788999999999874221   222221111  


Q ss_pred             --cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHH
Q 017249          237 --GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLR  286 (375)
Q Consensus       237 --~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~  286 (375)
                        ....|+..+...+|..-+..+.+|.+++..++ ..+..+.+ ...+..+.+
T Consensus       564 ~ylfk~l~~k~e~~np~~i~~~~yilv~~aa~d~-~l~~~V~~q~~~L~~i~e  615 (743)
T COG5369         564 RYLFKRLIDKYEENNPMEILEGCYILVRNAACDD-TLDYIVQSQEDMLDSIFE  615 (743)
T ss_pred             HHHHHHHHHHHHhcCchhhhhhHHHHHHHHhccc-hHHHHHHhHHHHHHHHHH
Confidence              23345555566777777778999998888763 44444444 344444443

>KOG1061 consensus Vesicle coat complex AP-1/AP-2/AP-4, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.73  E-value=0.00069  Score=66.69  Aligned_cols=72  Identities=21%  Similarity=0.192  Sum_probs=61.6

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      -...++.+.++++++.++..++.++.++-..+    .+...+.|.++.|..++.+.++.++..|+.+|..+...++
T Consensus       121 y~~~Pl~~~l~d~~~yvRktaa~~vakl~~~~----~~~~~~~gl~~~L~~ll~D~~p~VVAnAlaaL~eI~e~~~  192 (734)
T KOG1061|consen  121 YLCDPLLKCLKDDDPYVRKTAAVCVAKLFDID----PDLVEDSGLVDALKDLLSDSNPMVVANALAALSEIHESHP  192 (734)
T ss_pred             HHHHHHHHhccCCChhHHHHHHHHHHHhhcCC----hhhccccchhHHHHHHhcCCCchHHHHHHHHHHHHHHhCC
Confidence            35678888889999999999999999887655    4556678999999999999999999999999999987554

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.73  E-value=0.0021  Score=63.02  Aligned_cols=240  Identities=13%  Similarity=0.092  Sum_probs=139.9

Q ss_pred             hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHH
Q 017249           15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLAL   92 (375)
Q Consensus        15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L   92 (375)
                      .+-+..+.....+.++|.-+.++.+..+.-.+..+.++...-.....+.-.+...++.++-.+..++  ..+....+.++
T Consensus       706 v~ia~KvG~~~~v~R~v~~lkde~e~yrkm~~etv~ri~~~lg~~diderleE~lidgil~Afqeqtt~d~vml~gfg~V  785 (1172)
T KOG0213|consen  706 VEIAAKVGSDPIVSRVVLDLKDEPEQYRKMVAETVSRIVGRLGAADIDERLEERLIDGILYAFQEQTTEDSVMLLGFGTV  785 (1172)
T ss_pred             HHHHHHhCchHHHHHHhhhhccccHHHHHHHHHHHHHHHhccccccccHHHHHHHHHHHHHHHHhcccchhhhhhhHHHH
Confidence            3445556666677777777777777666655555555443220000000011122333333333322  12222333333


Q ss_pred             HHhhcc-ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC---hhHHHhcCChHHHHHHhccCCHHHH
Q 017249           93 LNLAVR-NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN---KPAIAASGAAPLLVQILHSGSVQGR  168 (375)
Q Consensus        93 ~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~---~~~i~~~~~l~~L~~lL~~~~~~~~  168 (375)
                      .+-... ...+-.+     .+..++..|++.++.+|+.|+..+..++.--..   -..+...|.  .|.+.|....+++.
T Consensus       786 ~~~lg~r~kpylpq-----i~stiL~rLnnksa~vRqqaadlis~la~Vlktc~ee~~m~~lGv--vLyEylgeeypEvL  858 (1172)
T KOG0213|consen  786 VNALGGRVKPYLPQ-----ICSTILWRLNNKSAKVRQQAADLISSLAKVLKTCGEEKLMGHLGV--VLYEYLGEEYPEVL  858 (1172)
T ss_pred             HHHHhhccccchHH-----HHHHHHHHhcCCChhHHHHHHHHHHHHHHHHHhccHHHHHHHhhH--HHHHhcCcccHHHH
Confidence            332211 1111222     244667788999999999999999998754222   223334443  47778888888887


Q ss_pred             HHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-h---hhHHHhhccCcHHHHHH
Q 017249          169 VDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-E---GRIAITNSDGGILTLVE  243 (375)
Q Consensus       169 ~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~---~~~~~~~~~g~v~~Lv~  243 (375)
                      -..+.+|+.+...- -.+..---.+.+|.|.-+|++.  +.++++++...+..+|... +   .|..+.    +--.|+.
T Consensus       859 gsILgAikaI~nvigm~km~pPi~dllPrltPILknr--heKVqen~IdLvg~IadrgpE~v~aREWMR----IcfeLle  932 (1172)
T KOG0213|consen  859 GSILGAIKAIVNVIGMTKMTPPIKDLLPRLTPILKNR--HEKVQENCIDLVGTIADRGPEYVSAREWMR----ICFELLE  932 (1172)
T ss_pred             HHHHHHHHHHHHhccccccCCChhhhcccchHhhhhh--HHHHHHHHHHHHHHHHhcCcccCCHHHHHH----HHHHHHH
Confidence            77777777665431 1111111246889999999876  6689999999999998642 2   233332    2345777


Q ss_pred             HhccCChHHHHHHHHHHHHhcccC
Q 017249          244 TVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       244 lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      +|+..+..++..|...++.++..-
T Consensus       933 lLkahkK~iRRaa~nTfG~IakaI  956 (1172)
T KOG0213|consen  933 LLKAHKKEIRRAAVNTFGYIAKAI  956 (1172)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHhc
Confidence            888888889999999988887643

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.73  E-value=0.036  Score=53.27  Aligned_cols=300  Identities=16%  Similarity=0.160  Sum_probs=163.8

Q ss_pred             HHHHHHHHhcCCC----HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           26 LIEELSDKLINGD----LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        26 ~l~~Lv~~L~s~~----~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      +.-++++.+.+..    .-....-++++..+...+ ++.+.++     .|.|-..|++...-+...+++.+..++..+  
T Consensus       224 a~lklv~hf~~n~smknq~a~V~lvr~~~~ll~~n-~q~~~q~-----rpfL~~wls~k~emV~lE~Ar~v~~~~~~n--  295 (898)
T COG5240         224 AQLKLVEHFRGNASMKNQLAGVLLVRATVELLKEN-SQALLQL-----RPFLNSWLSDKFEMVFLEAARAVCALSEEN--  295 (898)
T ss_pred             HHHHHHHHhhcccccccchhheehHHHHHHHHHhC-hHHHHHH-----HHHHHHHhcCcchhhhHHHHHHHHHHHHhc--
Confidence            4456666665432    333444566777777777 5665554     466667788877888999999999888643  


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      .-..++.. .+..|-.+|++.....|..|.++|..|+...+.+....    -+-+-.++.+.+..+...|..+|.. +..
T Consensus       296 v~~~~~~~-~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~kv~vc----N~evEsLIsd~Nr~IstyAITtLLK-TGt  369 (898)
T COG5240         296 VGSQFVDQ-TVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQKVSVC----NKEVESLISDENRTISTYAITTLLK-TGT  369 (898)
T ss_pred             cCHHHHHH-HHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCceeeec----ChhHHHHhhcccccchHHHHHHHHH-cCc
Confidence            22233322 36677778888888899999999999987654332211    1223333344444444444433322 111


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHH--------HhhccCc-------HHHHHHHh
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIA--------ITNSDGG-------ILTLVETV  245 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~--------~~~~~g~-------v~~Lv~lL  245 (375)
                      +++...+++  .++..+.=+.++     .+.-+..+++.||. .|.-+..        +. ..|+       |+.+...+
T Consensus       370 ~e~idrLv~--~I~sfvhD~SD~-----FKiI~ida~rsLsl~Fp~k~~s~l~FL~~~L~-~eGg~eFK~~~Vdaisd~~  441 (898)
T COG5240         370 EETIDRLVN--LIPSFVHDMSDG-----FKIIAIDALRSLSLLFPSKKLSYLDFLGSSLL-QEGGLEFKKYMVDAISDAM  441 (898)
T ss_pred             hhhHHHHHH--HHHHHHHhhccC-----ceEEeHHHHHHHHhhCcHHHHHHHHHHHHHHH-hcccchHHHHHHHHHHHHH
Confidence            222222221  111111111111     11111222222221 1111111        11 2333       23333333


Q ss_pred             ccCChHHHHHHHHHHHHhcccCc-HHHHH----HHHHcC--------ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          246 EDGSLVSTQHAVGALLSLCQSCR-DKYRQ----LILKEG--------AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       246 ~~~~~~~~~~a~~~L~~l~~~~~-~~~~~----~l~~~g--------~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      . ..|..++.|+..||.+..++. ++..-    .+.++|        .+.++..-+--.+..+|-.|+.+|..++-....
T Consensus       442 ~-~~p~skEraLe~LC~fIEDcey~~I~vrIL~iLG~EgP~a~~P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d  520 (898)
T COG5240         442 E-NDPDSKERALEVLCTFIEDCEYHQITVRILGILGREGPRAKTPGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD  520 (898)
T ss_pred             h-hCchHHHHHHHHHHHHHhhcchhHHHHHHHHHhcccCCCCCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc
Confidence            3 346678888888888876652 11111    111222        344444433345678999999999888776655


Q ss_pred             hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          313 KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       313 ~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ......+...|-+.+   .|.++..+++|.=+|++|.-.
T Consensus       521 ~~~~~sv~~~lkRcl---nD~DdeVRdrAsf~l~~~~~~  556 (898)
T COG5240         521 VVSPQSVENALKRCL---NDQDDEVRDRASFLLRNMRLS  556 (898)
T ss_pred             cccHHHHHHHHHHHh---hcccHHHHHHHHHHHHhhhhh
Confidence            566666666554444   466689999999999999744

>PF12348 CLASP_N: CLASP N terminal; InterPro: IPR024395 This domain is found in the N-terminal region of CLIP-associated proteins (CLASPs), which are widely conserved microtubule plus-end-tracking proteins that regulate the stability of dynamic microtubules [, ]

Probab=97.71  E-value=0.00033  Score=61.27  Aligned_cols=184  Identities=16%  Similarity=0.088  Sum_probs=112.0

Q ss_pred             CCCCHHHHHHHHHHHHHhhccC--hhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCCh
Q 017249           78 VSPNLDAIESSLLALLNLAVRN--ERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA  153 (375)
Q Consensus        78 ~~~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l  153 (375)
                      .+.+.+.+..++..|..+..++  ......+..  ...+..+...+.+....+...|+.++..++..-...-.-.....+
T Consensus        17 ~~~~W~~r~~al~~L~~l~~~~~~~~~~~~~~~~l~~~~~~i~~~l~d~Rs~v~~~A~~~l~~l~~~l~~~~~~~~~~~l   96 (228)
T PF12348_consen   17 SESDWEERVEALQKLRSLIKGNAPEDFPPDFVECLRQLLDAIIKQLSDLRSKVSKTACQLLSDLARQLGSHFEPYADILL   96 (228)
T ss_dssp             T-SSHHHHHHHHHHHHHHHHH-B-----HHHHHHHH---HHHHH-S-HH---HHHHHHHHHHHHHHHHGGGGHHHHHHHH
T ss_pred             CccCHHHHHHHHHHHHHHHHcCCccccHHHHHHHHHHhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhHhHHHHHHHHH
Confidence            5678999999999999999866  233344333  255677777777777778889999999998764332211245678


Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHh
Q 017249          154 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAIT  232 (375)
Q Consensus       154 ~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~  232 (375)
                      +.|++.+.+.+..++..|..+|..++..-.....+    .++.+...+.+.  .+.++..++..+..+...-. ....+-
T Consensus        97 ~~Ll~~~~~~~~~i~~~a~~~L~~i~~~~~~~~~~----~~~~l~~~~~~K--n~~vR~~~~~~l~~~l~~~~~~~~~l~  170 (228)
T PF12348_consen   97 PPLLKKLGDSKKFIREAANNALDAIIESCSYSPKI----LLEILSQGLKSK--NPQVREECAEWLAIILEKWGSDSSVLQ  170 (228)
T ss_dssp             HHHHHGGG---HHHHHHHHHHHHHHHTTS-H--HH----HHHHHHHHTT-S---HHHHHHHHHHHHHHHTT-----GGG-
T ss_pred             HHHHHHHccccHHHHHHHHHHHHHHHHHCCcHHHH----HHHHHHHHHhCC--CHHHHHHHHHHHHHHHHHccchHhhhc
Confidence            99999999999899999999999988653311111    133444444443  45778888888887765332 111111


Q ss_pred             h---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          233 N---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       233 ~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      .   -...++.+...+.++++.+|+.|-.+++.+...-
T Consensus       171 ~~~~~~~l~~~l~~~l~D~~~~VR~~Ar~~~~~l~~~~  208 (228)
T PF12348_consen  171 KSAFLKQLVKALVKLLSDADPEVREAARECLWALYSHF  208 (228)
T ss_dssp             -HHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHC
Confidence            0   0246677888889999999999999999986654

The domain is also found in other proteins involved in microtubule binding, including STU1, MOR1 and spindle pole body component Alp14.; PDB: 2QK2_A.

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=97.70  E-value=0.0081  Score=57.50  Aligned_cols=298  Identities=12%  Similarity=0.078  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHHHHhhCChhhHHHHHhcC-ChHHHHHh-hCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCC----
Q 017249           39 LETKIEAARDIRKVVKKSSLKTRSEFAAAG-VVQPLVLM-LVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGA----  111 (375)
Q Consensus        39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g-~v~~Lv~~-L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~----  111 (375)
                      ...+.+++.++...+...+|  ...+...+ .+-.++.. ++. ++..+|-.|+.+|.+-+.   ..+..+...+-    
T Consensus       148 ~~~k~~sl~~~gy~ces~~P--e~li~~sN~il~aiv~ga~k~et~~avRLaaL~aL~dsl~---fv~~nf~~E~erNy~  222 (858)
T COG5215         148 VSGKCESLGICGYHCESEAP--EDLIQMSNVILFAIVMGALKNETTSAVRLAALKALMDSLM---FVQGNFCYEEERNYF  222 (858)
T ss_pred             hHhHHHHHHHHHHHhhccCH--HHHHHHhhHHHHHHHHhhcccCchHHHHHHHHHHHHHHHH---HHHHhhcchhhhchh
Confidence            34577788888888877623  33333333 23334433 333 357788889888887321   23333433333    


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCc----
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENS----  185 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~----  185 (375)
                      +...++.-..++.+++..+..||..+..- -..-+...+.-........+++++.++...+...-..++... +.-    
T Consensus       223 mqvvceatq~~d~e~q~aafgCl~kim~LyY~fm~~ymE~aL~alt~~~mks~nd~va~qavEfWsticeEeid~~~e~~  302 (858)
T COG5215         223 MQVVCEATQGNDEELQHAAFGCLNKIMMLYYKFMQSYMENALAALTGRFMKSQNDEVAIQAVEFWSTICEEEIDGEMEDK  302 (858)
T ss_pred             heeeehhccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhhhHHHHh
Confidence            33444555677899999999999887532 122223344444555666788889888777776554554321 100    


Q ss_pred             ----------hhh--hhcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH----H
Q 017249          186 ----------SPI--LDATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNSDGGILTLVE----T  244 (375)
Q Consensus       186 ----------~~i--~~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~----l  244 (375)
                                ...  .-.+++|.|+++|....++.     .....|..+|.-++....        ...+..++.    -
T Consensus       303 ~~pe~p~qn~~fa~aav~dvlP~lL~LL~~q~ed~~~DdWn~smaA~sCLqlfaq~~g--------d~i~~pVl~FvEqn  374 (858)
T COG5215         303 YLPEVPAQNHGFARAAVADVLPELLSLLEKQGEDYYGDDWNPSMAASSCLQLFAQLKG--------DKIMRPVLGFVEQN  374 (858)
T ss_pred             hcccCchhhcchHHHHHHHHHHHHHHHHHhcCCCccccccchhhhHHHHHHHHHHHhh--------hHhHHHHHHHHHHh
Confidence                      000  01358899999998632111     234555666654442211        122223333    3


Q ss_pred             hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh----hH
Q 017249          245 VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS----VL  320 (375)
Q Consensus       245 L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g----~~  320 (375)
                      +.+++-.-++.|+.+++.+.++....+...+ -..++|.+...+.+..-.++..++|++..++.+.+.-+-..|    .+
T Consensus       375 i~~~~w~nreaavmAfGSvm~gp~~~~lT~~-V~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~va~~i~p~~Hl~~~v  453 (858)
T COG5215         375 IRSESWANREAAVMAFGSVMHGPCEDCLTKI-VPQALPGIENEMSDSCLWVKSTTAWCFGAIADHVAMIISPCGHLVLEV  453 (858)
T ss_pred             ccCchhhhHHHHHHHhhhhhcCccHHHHHhh-HHhhhHHHHHhcccceeehhhHHHHHHHHHHHHHHHhcCccccccHHH
Confidence            4566666788999999999887654433333 367788888888888889999999999999988865333333    33


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHH
Q 017249          321 EKIVYDIAARVDGADKAAETAKRLLQDMVQRSME  354 (375)
Q Consensus       321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~  354 (375)
                      .+.+--|   .|+ |+......+...+|+.+-..
T Consensus       454 sa~liGl---~D~-p~~~~ncsw~~~nlv~h~a~  483 (858)
T COG5215         454 SASLIGL---MDC-PFRSINCSWRKENLVDHIAK  483 (858)
T ss_pred             HHHHhhh---hcc-chHHhhhHHHHHhHHHhhhh
Confidence            3333222   233 66666666666666655433

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.68  E-value=0.00015  Score=69.80  Aligned_cols=250  Identities=19%  Similarity=0.180  Sum_probs=149.6

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHH----
Q 017249           73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAI----  147 (375)
Q Consensus        73 Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i----  147 (375)
                      |..+..+.+..++.+|+..|..|..+. ..-..     .....++.+++.+..+|..|+++++-+..-.+. ....    
T Consensus       203 l~~~~~~~D~~Vrt~A~eglL~L~eg~-kL~~~-----~Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~  276 (823)
T KOG2259|consen  203 LIYLEHDQDFRVRTHAVEGLLALSEGF-KLSKA-----CYSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEE  276 (823)
T ss_pred             HHHHhcCCCcchHHHHHHHHHhhcccc-cccHH-----HHHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhh
Confidence            333444444455555555554444321 11111     245678888888999999999888877654321 1110    


Q ss_pred             -HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHh--hC
Q 017249          148 -AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL--SS  223 (375)
Q Consensus       148 -~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l--~~  223 (375)
                       ....++..+.+.+.+.+..++..|+.+|..+... .+...+-.+..++..    ++...   ...+.......+-  +.
T Consensus       277 kl~D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSee~i~QTLdKKlms~----lRRkr---~ahkrpk~l~s~GewSs  349 (823)
T KOG2259|consen  277 KLKDAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSEEIIQQTLDKKLMSR----LRRKR---TAHKRPKALYSSGEWSS  349 (823)
T ss_pred             hhHHHHHHHHHHHHhcCceeeeehHHHHhchHHHhHHHHHHHHHHHHHhhh----hhhhh---hcccchHHHHhcCCccc
Confidence             1223455666777777888888888887766432 222222222222221    11100   0001111111111  00


Q ss_pred             ------------ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249          224 ------------SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  291 (375)
Q Consensus       224 ------------~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~  291 (375)
                                  .++.-..++ .+|+--.+++-|.+.-.++|..|+..++.|+...+.      .....+.-|+.++.+.
T Consensus       350 Gk~~~advpsee~d~~~~siI-~sGACGA~VhGlEDEf~EVR~AAV~Sl~~La~ssP~------FA~~aldfLvDMfNDE  422 (823)
T KOG2259|consen  350 GKEWNADVPSEEDDEEEESII-PSGACGALVHGLEDEFYEVRRAAVASLCSLATSSPG------FAVRALDFLVDMFNDE  422 (823)
T ss_pred             CccccccCchhhccccccccc-cccccceeeeechHHHHHHHHHHHHHHHHHHcCCCC------cHHHHHHHHHHHhccH
Confidence                        112223344 678888999999888889999999999999987642      2234567899999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          292 TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       292 ~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      ...+|..|..+|+.++.+-   .++...++.++..|.   |-++++++....+|++.
T Consensus       423 ~~~VRL~ai~aL~~Is~~l---~i~eeql~~il~~L~---D~s~dvRe~l~elL~~~  473 (823)
T KOG2259|consen  423 IEVVRLKAIFALTMISVHL---AIREEQLRQILESLE---DRSVDVREALRELLKNA  473 (823)
T ss_pred             HHHHHHHHHHHHHHHHHHh---eecHHHHHHHHHHHH---hcCHHHHHHHHHHHHhc
Confidence            9999999999999999884   555666676666663   55677777777666654

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.67  E-value=0.00013  Score=44.78  Aligned_cols=40  Identities=25%  Similarity=0.311  Sum_probs=36.6

Q ss_pred             hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           58 LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        58 ~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ++++..+++.|+++.|+++|.+++.+++..++++|+||+.
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~~   41 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLSS   41 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHcC
Confidence            3578889999999999999999999999999999999873

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.66  E-value=0.0004  Score=51.65  Aligned_cols=67  Identities=21%  Similarity=0.133  Sum_probs=59.9

Q ss_pred             HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249           42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVRNERNKVKIATA  109 (375)
Q Consensus        42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~  109 (375)
                      +...++.|++++..+ +..++.+.+.|+++.+++...  ..+|-+++.|+.++++|+.++++++..+.+.
T Consensus         3 K~~lvrlianl~~~~-~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~~L   71 (102)
T PF09759_consen    3 KRDLVRLIANLCYKN-KEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIAQL   71 (102)
T ss_pred             HHHHHHHHHHHHhCC-HHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHHhc
Confidence            567889999999999 999999999999999998764  4579999999999999999999999888763

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.65  E-value=0.0076  Score=58.98  Aligned_cols=259  Identities=16%  Similarity=0.082  Sum_probs=145.1

Q ss_pred             hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249           34 LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAVRNERNKVKIATAGA  111 (375)
Q Consensus        34 L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~  111 (375)
                      |.|.|+.-...|+.++.++...+   .++.+.     +.+-++|-+++  .-++..|+-+|..|-+.+|+.   +-..+.
T Consensus       120 L~srn~~fv~LAL~~I~niG~re---~~ea~~-----~DI~KlLvS~~~~~~vkqkaALclL~L~r~spDl---~~~~~W  188 (938)
T KOG1077|consen  120 LSSRNPTFVCLALHCIANIGSRE---MAEAFA-----DDIPKLLVSGSSMDYVKQKAALCLLRLFRKSPDL---VNPGEW  188 (938)
T ss_pred             hhcCCcHHHHHHHHHHHhhccHh---HHHHhh-----hhhHHHHhCCcchHHHHHHHHHHHHHHHhcCccc---cChhhH
Confidence            34667777777888888876544   444332     22335665543  456788888888888765532   222456


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-------------CCHHHHHHHHHHHHHh
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-------------GSVQGRVDAVTALHYL  178 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-------------~~~~~~~~a~~~L~~L  178 (375)
                      +..++.+|...+-.+...+...+-.|+...+.--...-...+..|..+...             +.+=.+..++++|.+.
T Consensus       189 ~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~~~avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~  268 (938)
T KOG1077|consen  189 AQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCLPLAVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIY  268 (938)
T ss_pred             HHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhHHHHHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhC
Confidence            788888888777666666666666666553321111111122222222211             2345566677777666


Q ss_pred             ccC--CCCchhhhhcCCcHHHHHHhhhcccchHH-----HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChH
Q 017249          179 STC--KENSSPILDATAVPPLINLLKDCKKYSKF-----AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV  251 (375)
Q Consensus       179 ~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~-----~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~  251 (375)
                      -.-  +..+..+.  .+.+.++.....+....++     +.+.+.-.-+|+.+-+.-..++  ..++..|-++|.+....
T Consensus       269 p~~~D~~~r~~l~--evl~~iLnk~~~~~~~k~vq~~na~naVLFeaI~l~~h~D~e~~ll--~~~~~~Lg~fls~rE~N  344 (938)
T KOG1077|consen  269 PTPEDPSTRARLN--EVLERILNKAQEPPKSKKVQHSNAKNAVLFEAISLAIHLDSEPELL--SRAVNQLGQFLSHRETN  344 (938)
T ss_pred             CCCCCchHHHHHH--HHHHHHHhccccCccccchHhhhhHHHHHHHHHHHHHHcCCcHHHH--HHHHHHHHHHhhccccc
Confidence            321  12222221  1233333333321111111     1112222224554434334444  25778888888888888


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCCh
Q 017249          252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +|-.|+..++.|+...  ...+.+-..  .+.++..++ ..|-.+|+.|+.+|..+|..+.
T Consensus       345 iRYLaLEsm~~L~ss~--~s~davK~h--~d~Ii~sLkterDvSirrravDLLY~mcD~~N  401 (938)
T KOG1077|consen  345 IRYLALESMCKLASSE--FSIDAVKKH--QDTIINSLKTERDVSIRRRAVDLLYAMCDVSN  401 (938)
T ss_pred             chhhhHHHHHHHHhcc--chHHHHHHH--HHHHHHHhccccchHHHHHHHHHHHHHhchhh
Confidence            8888888888888775  224443333  666666666 6788888888888888887664

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.64  E-value=0.02  Score=55.44  Aligned_cols=258  Identities=17%  Similarity=0.128  Sum_probs=165.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh--HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      .+...+..|++..+.++..|+.....++.-- ..+  -+.+...|.  .|.+.|....+++.-..+.++..+.. ....+
T Consensus       605 ivStiL~~L~~k~p~vR~~aadl~~sl~~vl-k~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~s-v~~~~  680 (975)
T COG5181         605 IVSTILKLLRSKPPDVRIRAADLMGSLAKVL-KACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYS-VHRFR  680 (975)
T ss_pred             HHHHHHHHhcCCCccHHHHHHHHHHHHHHHH-HhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhh-hhccc
Confidence            4555667788999999999998877776543 111  223444553  36677888889988887777777764 22222


Q ss_pred             HHH-HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          104 VKI-ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       104 ~~i-~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      ..- --.|.+|.|...|++.+..+..+.+..+..++.+.+.    +..+.   .-=-|+++|++.+.+++.+|..++..+
T Consensus       681 ~mqpPi~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMR---IcfeLvd~Lks~nKeiRR~A~~tfG~I  757 (975)
T COG5181         681 SMQPPISGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMR---ICFELVDSLKSWNKEIRRNATETFGCI  757 (975)
T ss_pred             ccCCchhhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHhhHHHHHhhhhhhhhH
Confidence            221 1368899999999999999999999999999887542    33332   223478889999999999999998887


Q ss_pred             ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhcc-C---cHHHHHHHhccCChHHHH
Q 017249          179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD-G---GILTLVETVEDGSLVSTQ  254 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~-g---~v~~Lv~lL~~~~~~~~~  254 (375)
                      +..      +.-.+++..|++-|+..    .-+...+..+. ++        ++.+. |   .+|.|+.=-..++..+|.
T Consensus       758 s~a------iGPqdvL~~LlnnLkvq----eRq~Rvctsva-I~--------iVae~cgpfsVlP~lm~dY~TPe~nVQn  818 (975)
T COG5181         758 SRA------IGPQDVLDILLNNLKVQ----ERQQRVCTSVA-IS--------IVAEYCGPFSVLPTLMSDYETPEANVQN  818 (975)
T ss_pred             Hhh------cCHHHHHHHHHhcchHH----HHHhhhhhhhh-hh--------hhHhhcCchhhHHHHHhcccCchhHHHH
Confidence            642      11112222333333221    11111222111 00        11122 2   334444434457788899


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      ..+.+++.+-..-.+..++.+  .-..|.|-..+.+.|+.-|.-|..+++++.-+.+
T Consensus       819 GvLkam~fmFeyig~~s~dYv--y~itPlleDAltDrD~vhRqta~nvI~Hl~Lnc~  873 (975)
T COG5181         819 GVLKAMCFMFEYIGQASLDYV--YSITPLLEDALTDRDPVHRQTAMNVIRHLVLNCP  873 (975)
T ss_pred             hHHHHHHHHHHHHHHHHHHHH--HHhhHHHHhhhcccchHHHHHHHHHHHHHhcCCC
Confidence            889988887665433333333  3455666678889999999999999999987664

>smart00185 ARM Armadillo/beta-catenin-like repeats

Probab=97.58  E-value=0.0002  Score=43.91  Aligned_cols=39  Identities=38%  Similarity=0.515  Sum_probs=36.0

Q ss_pred             hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249          100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS  138 (375)
Q Consensus       100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  138 (375)
                      ++++..+.+.|+++.|++++.+++++++..++++|.||+
T Consensus         2 ~~~~~~i~~~g~i~~L~~ll~~~~~~i~~~a~~aL~nl~   40 (41)
T smart00185        2 DEQKQAVVDAGGLPALVELLKSEDEEVVKEAAWALSNLS   40 (41)
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHc
Confidence            347888999999999999999999999999999999986

Approx. 40 amino acid repeat. Tandem repeats form superhelix of helices that is proposed to mediate interaction of beta-catenin with its ligands. Involved in transducing the Wingless/Wnt signal. In plakoglobin arm repeats bind alpha-catenin and N-cadherin.

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.58  E-value=0.0042  Score=53.19  Aligned_cols=135  Identities=17%  Similarity=0.149  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-----CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249          211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL  285 (375)
Q Consensus       211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~  285 (375)
                      .-+++.+|..++++++.+..++ .+..--.|..+|..     +.+.+|-.++++|+.+...++++....+...++||..+
T Consensus        96 VcnaL~LlQcvASHpdTr~~FL-~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl~TeIVPlCL  174 (293)
T KOG3036|consen   96 VCNALALLQCVASHPDTRRAFL-RAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLLTTEIVPLCL  174 (293)
T ss_pred             HHHHHHHHHHHhcCcchHHHHH-HccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHHHhhhHHHHH
Confidence            3568899999999999999999 47777788888853     33778999999999999998888888889999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHHhhcCChh---------hhhhhh-hHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          286 RLTVEGTFEAQERARTLLDLLRDTPQE---------KRLSSS-VLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       286 ~ll~~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g-~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      +.++.|+...+.-|..++..+-.+...         +....+ ++..++..+.  ..++++....+.++..+|
T Consensus       175 rime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~--~~ps~RllKhviRcYlrL  245 (293)
T KOG3036|consen  175 RIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLV--SMPSPRLLKHVIRCYLRL  245 (293)
T ss_pred             HHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHh--cCCCHHHHHHHHHHHHHh
Confidence            999999999999999999987654421         222222 4555555554  445566655555555544

>KOG1062 consensus Vesicle coat complex AP-1, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.56  E-value=0.041  Score=54.82  Aligned_cols=42  Identities=12%  Similarity=0.143  Sum_probs=29.6

Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHh
Q 017249          283 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  328 (375)
Q Consensus       283 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~  328 (375)
                      .+++.+++.|+.+|+.|..++..+...+.-+    ..++.|+..|.
T Consensus       354 tIleCL~DpD~SIkrralELs~~lvn~~Nv~----~mv~eLl~fL~  395 (866)
T KOG1062|consen  354 TILECLKDPDVSIKRRALELSYALVNESNVR----VMVKELLEFLE  395 (866)
T ss_pred             HHHHHhcCCcHHHHHHHHHHHHHHhccccHH----HHHHHHHHHHH
Confidence            4566777888888888888888887766321    24556666665

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=97.53  E-value=0.011  Score=59.66  Aligned_cols=233  Identities=15%  Similarity=0.110  Sum_probs=139.3

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ....+..++++|.+.+.++|..|+++++-+...- ++.+ +.+     ++.|+.-+-++....+.-+.-.|......-++
T Consensus        45 e~kvv~~lLklL~D~ngEVQnlAVKClg~lvsKv-ke~~le~~-----ve~L~~~~~s~keq~rdissi~Lktvi~nl~P  118 (1233)
T KOG1824|consen   45 ERKVVKMLLKLLEDKNGEVQNLAVKCLGPLVSKV-KEDQLETI-----VENLCSNMLSGKEQLRDISSIGLKTVIANLPP  118 (1233)
T ss_pred             hhHHHHHHHHHHhccCcHHHHHHHHHHHHHHhhc-hHHHHHHH-----HHHHhhhhccchhhhccHHHHHHHHHHhcCCC
Confidence            3456788889999999999999999999998666 3332 222     33444332222223333222222222222222


Q ss_pred             hHHHHHHcCChHHHHHhhcCC------ChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249          102 NKVKIATAGAIPPLVELLKFQ------NGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA  174 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~------~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~  174 (375)
                      .-.......+++.+...|...      ...++..++..+..+-..- .--.- .+.+.+..++.-+.++...++..++.+
T Consensus       119 ~~~~~la~tV~~~~t~~l~~~i~~qe~~sai~~e~lDil~d~lsr~g~ll~~-fh~~il~~l~~ql~s~R~aVrKkai~~  197 (1233)
T KOG1824|consen  119 SSSSFLAATVCKRITPKLKQAISKQEDVSAIKCEVLDILADVLSRFGTLLPN-FHLSILKCLLPQLQSPRLAVRKKAITA  197 (1233)
T ss_pred             ccccccccHHHHHHHHHHHHHhhhcccchhhHHHHHHHHHHHHHhhcccCcc-hHHHHHHHHhhcccChHHHHHHHHHHH
Confidence            333344444444554444322      3336666666665543321 11111 456677788888888889999999999


Q ss_pred             HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh---ccCChH
Q 017249          175 LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV---EDGSLV  251 (375)
Q Consensus       175 L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL---~~~~~~  251 (375)
                      |..|+..-..   ..-.+.+..|++-|....... ....-..+|..++.....|.--. ....++.+.++.   ...+++
T Consensus       198 l~~la~~~~~---~ly~~li~~Ll~~L~~~~q~~-~~rt~Iq~l~~i~r~ag~r~~~h-~~~ivp~v~~y~~~~e~~dDE  272 (1233)
T KOG1824|consen  198 LGHLASSCNR---DLYVELIEHLLKGLSNRTQMS-ATRTYIQCLAAICRQAGHRFGSH-LDKIVPLVADYCNKIEEDDDE  272 (1233)
T ss_pred             HHHHHHhcCH---HHHHHHHHHHHhccCCCCchH-HHHHHHHHHHHHHHHhcchhhcc-cchhhHHHHHHhcccccCcHH
Confidence            9999864221   111246667777676654332 23445566666665554444333 356788899998   567789


Q ss_pred             HHHHHHHHHHHhcccC
Q 017249          252 STQHAVGALLSLCQSC  267 (375)
Q Consensus       252 ~~~~a~~~L~~l~~~~  267 (375)
                      +++.++.++..+...+
T Consensus       273 LrE~~lQale~fl~rc  288 (1233)
T KOG1824|consen  273 LREYCLQALESFLRRC  288 (1233)
T ss_pred             HHHHHHHHHHHHHHhC
Confidence            9999999998887665

>KOG0213 consensus Splicing factor 3b, subunit 1 [RNA processing and modification]

Probab=97.53  E-value=0.041  Score=54.48  Aligned_cols=254  Identities=16%  Similarity=0.149  Sum_probs=161.9

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhh--HHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKT--RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~--~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      ...+..|++.++.++..|+..+..++.-- ..+  -+.+...|+  .|.+.|....+++.-..+.+|..+...  -.-..
T Consensus       802 stiL~rLnnksa~vRqqaadlis~la~Vl-ktc~ee~~m~~lGv--vLyEylgeeypEvLgsILgAikaI~nv--igm~k  876 (1172)
T KOG0213|consen  802 STILWRLNNKSAKVRQQAADLISSLAKVL-KTCGEEKLMGHLGV--VLYEYLGEEYPEVLGSILGAIKAIVNV--IGMTK  876 (1172)
T ss_pred             HHHHHHhcCCChhHHHHHHHHHHHHHHHH-HhccHHHHHHHhhH--HHHHhcCcccHHHHHHHHHHHHHHHHh--ccccc
Confidence            34445677899999999999998887654 222  223444454  367889888888877666666665531  11111


Q ss_pred             HH--HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249          106 IA--TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS  179 (375)
Q Consensus       106 i~--~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~  179 (375)
                      +.  -.+.+|.|...|++.+..++++++..+..++...+-    +..+.   +-=-|+++|++.+.+++.+|..++..++
T Consensus       877 m~pPi~dllPrltPILknrheKVqen~IdLvg~IadrgpE~v~aREWMR---IcfeLlelLkahkK~iRRaa~nTfG~Ia  953 (1172)
T KOG0213|consen  877 MTPPIKDLLPRLTPILKNRHEKVQENCIDLVGTIADRGPEYVSAREWMR---ICFELLELLKAHKKEIRRAAVNTFGYIA  953 (1172)
T ss_pred             cCCChhhhcccchHhhhhhHHHHHHHHHHHHHHHHhcCcccCCHHHHHH---HHHHHHHHHHHHHHHHHHHHHhhhhHHH
Confidence            11  257789999999999999999999999999977542    33332   2234788899999999999999999886


Q ss_pred             cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhcc----CcHHHHHHHhccCChHHHHH
Q 017249          180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD----GGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~----g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      ..      +.-.+++..|++-|...    .-+...+..+. ++        ++.+.    ..+|.|+.=-..++..+|.-
T Consensus       954 ka------IGPqdVLatLlnnLkvq----eRq~RvcTtva-Ia--------IVaE~c~pFtVLPalmneYrtPe~nVQnG 1014 (1172)
T KOG0213|consen  954 KA------IGPQDVLATLLNNLKVQ----ERQNRVCTTVA-IA--------IVAETCGPFTVLPALMNEYRTPEANVQNG 1014 (1172)
T ss_pred             Hh------cCHHHHHHHHHhcchHH----HHHhchhhhhh-hh--------hhhhhcCchhhhHHHHhhccCchhHHHHh
Confidence            42      11112233333333321    11111222111 11        11122    23444444445677888998


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .+.+|+.+-..-.+-.++.+  .-+.|.|-..+.+.|+.-|.-|..++++++-..
T Consensus      1015 VLkalsf~FeyigemskdYi--yav~PlleDAlmDrD~vhRqta~~~I~Hl~Lg~ 1067 (1172)
T KOG0213|consen 1015 VLKALSFMFEYIGEMSKDYI--YAVTPLLEDALMDRDLVHRQTAMNVIKHLALGV 1067 (1172)
T ss_pred             HHHHHHHHHHHHHHHhhhHH--HHhhHHHHHhhccccHHHHHHHHHHHHHHhcCC
Confidence            88888887665433333333  345667777888899999999999999998665

>COG5240 SEC21 Vesicle coat complex COPI, gamma subunit [Intracellular trafficking and secretion]

Probab=97.53  E-value=0.011  Score=56.61  Aligned_cols=275  Identities=18%  Similarity=0.161  Sum_probs=141.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhC-ChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKS-SLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~-~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .|.|=.+|++.-..+..++++.+..++..+ .++..+     ..+..|-.+|+++....+-.|+++|..|+...|+ +..
T Consensus       266 rpfL~~wls~k~emV~lE~Ar~v~~~~~~nv~~~~~~-----~~vs~L~~fL~s~rv~~rFsA~Riln~lam~~P~-kv~  339 (898)
T COG5240         266 RPFLNSWLSDKFEMVFLEAARAVCALSEENVGSQFVD-----QTVSSLRTFLKSTRVVLRFSAMRILNQLAMKYPQ-KVS  339 (898)
T ss_pred             HHHHHHHhcCcchhhhHHHHHHHHHHHHhccCHHHHH-----HHHHHHHHHHhcchHHHHHHHHHHHHHHHhhCCc-eee
Confidence            445555666667888999999999988766 122221     2467788889999999999999999999975432 111


Q ss_pred             HHHc----------C--ChHHHHHhhcCCChHHHH-------------------HHHHHHHHhhccCCChhHHHhcCChH
Q 017249          106 IATA----------G--AIPPLVELLKFQNGTLRE-------------------LAAAAILTLSAAAPNKPAIAASGAAP  154 (375)
Q Consensus       106 i~~~----------g--~i~~Lv~lL~~~~~~~~~-------------------~a~~~L~~Ls~~~~~~~~i~~~~~l~  154 (375)
                      .+..          .  ..-++..+|+.+..+...                   .++.++..|+..-+.++.    -.+.
T Consensus       340 vcN~evEsLIsd~Nr~IstyAITtLLKTGt~e~idrLv~~I~sfvhD~SD~FKiI~ida~rsLsl~Fp~k~~----s~l~  415 (898)
T COG5240         340 VCNKEVESLISDENRTISTYAITTLLKTGTEETIDRLVNLIPSFVHDMSDGFKIIAIDALRSLSLLFPSKKL----SYLD  415 (898)
T ss_pred             ecChhHHHHhhcccccchHHHHHHHHHcCchhhHHHHHHHHHHHHHhhccCceEEeHHHHHHHHhhCcHHHH----HHHH
Confidence            1110          0  011222233332222222                   222222222222111111    1123


Q ss_pred             HHHHHhc-cCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHH
Q 017249          155 LLVQILH-SGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAI  231 (375)
Q Consensus       155 ~L~~lL~-~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~  231 (375)
                      .|...|. .+..+.+..+..+|..+... |+.+..     ++..|...+.++..    .+-+.++|.-|-. .|....  
T Consensus       416 FL~~~L~~eGg~eFK~~~Vdaisd~~~~~p~skEr-----aLe~LC~fIEDcey----~~I~vrIL~iLG~EgP~a~~--  484 (898)
T COG5240         416 FLGSSLLQEGGLEFKKYMVDAISDAMENDPDSKER-----ALEVLCTFIEDCEY----HQITVRILGILGREGPRAKT--  484 (898)
T ss_pred             HHHHHHHhcccchHHHHHHHHHHHHHhhCchHHHH-----HHHHHHHHHhhcch----hHHHHHHHHHhcccCCCCCC--
Confidence            3333322 22334455555554444332 222222     22334444444322    1223444444332 111110  


Q ss_pred             hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                        ....+..+...+--.+..+|..|+.+|..++-+..+    .+....+...|-+.+.+.|.++|..|..+|+++.....
T Consensus       485 --P~~yvrhIyNR~iLEN~ivRsaAv~aLskf~ln~~d----~~~~~sv~~~lkRclnD~DdeVRdrAsf~l~~~~~~da  558 (898)
T COG5240         485 --PGKYVRHIYNRLILENNIVRSAAVQALSKFALNISD----VVSPQSVENALKRCLNDQDDEVRDRASFLLRNMRLSDA  558 (898)
T ss_pred             --cchHHHHHHHHHHHhhhHHHHHHHHHHHHhccCccc----cccHHHHHHHHHHHhhcccHHHHHHHHHHHHhhhhhhh
Confidence              112344444444445677899999999877765422    12223344566678899999999999999999985553


Q ss_pred             h-hhh---hhhhHHHHHHHHh
Q 017249          312 E-KRL---SSSVLEKIVYDIA  328 (375)
Q Consensus       312 ~-~~~---~~g~~~~l~~~l~  328 (375)
                      . .++   ..|-+|.+...+.
T Consensus       559 ~~pl~~sd~~~dipsle~~l~  579 (898)
T COG5240         559 CEPLFSSDELGDIPSLELELI  579 (898)
T ss_pred             hhccccccccCCcchhHHhhh
Confidence            2 223   3445565555443

>KOG1060 consensus Vesicle coat complex AP-3, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.018  Score=57.10  Aligned_cols=268  Identities=16%  Similarity=0.104  Sum_probs=172.1

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      -..|..+|.|.....+.+|++-|..+.... ....      ...|..|+...+.+.++++-.---|...+...++.. . 
T Consensus        37 ~~dL~~lLdSnkd~~KleAmKRIia~iA~G-~dvS------~~Fp~VVKNVaskn~EVKkLVyvYLlrYAEeqpdLA-L-  107 (968)
T KOG1060|consen   37 HDDLKQLLDSNKDSLKLEAMKRIIALIAKG-KDVS------LLFPAVVKNVASKNIEVKKLVYVYLLRYAEEQPDLA-L-  107 (968)
T ss_pred             hHHHHHHHhccccHHHHHHHHHHHHHHhcC-CcHH------HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcCCCce-e-
Confidence            357889999999999999998666665544 2322      347889999999999999988877877776443221 1 


Q ss_pred             HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCc
Q 017249          107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENS  185 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~  185 (375)
                         =-|..+-+-|+++++.+|..|+.+|..+      |..+...-.+-++-++..+.++.++..|+.+|-.|=+- ++.+
T Consensus       108 ---LSIntfQk~L~DpN~LiRasALRvlSsI------Rvp~IaPI~llAIk~~~~D~s~yVRk~AA~AIpKLYsLd~e~k  178 (968)
T KOG1060|consen  108 ---LSINTFQKALKDPNQLIRASALRVLSSI------RVPMIAPIMLLAIKKAVTDPSPYVRKTAAHAIPKLYSLDPEQK  178 (968)
T ss_pred             ---eeHHHHHhhhcCCcHHHHHHHHHHHHhc------chhhHHHHHHHHHHHHhcCCcHHHHHHHHHhhHHHhcCChhhH
Confidence               1256778888999999998888888776      22233333344455566778899999999999988654 3444


Q ss_pred             hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          186 SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      .++     +..+-.+|.+.  ++.+.-.|..++..+|.   ++-.++  ++-...|.++|.+-++.-|-..+..|..-|.
T Consensus       179 ~qL-----~e~I~~LLaD~--splVvgsAv~AF~evCP---erldLI--HknyrklC~ll~dvdeWgQvvlI~mL~RYAR  246 (968)
T KOG1060|consen  179 DQL-----EEVIKKLLADR--SPLVVGSAVMAFEEVCP---ERLDLI--HKNYRKLCRLLPDVDEWGQVVLINMLTRYAR  246 (968)
T ss_pred             HHH-----HHHHHHHhcCC--CCcchhHHHHHHHHhch---hHHHHh--hHHHHHHHhhccchhhhhHHHHHHHHHHHHH
Confidence            443     33444555554  33555556665555553   233344  4678888888887777777777777766654


Q ss_pred             cCc--HHHHHHHHH-cC------------------------ChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh
Q 017249          266 SCR--DKYRQLILK-EG------------------------AIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS  318 (375)
Q Consensus       266 ~~~--~~~~~~l~~-~g------------------------~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g  318 (375)
                      ..-  |.......+ .|                        .+...-.++.+.++.+-..++.+..+++-..+    ...
T Consensus       247 ~~l~~P~~~~~~~e~n~~~~~~~~~~~~~~~P~~~d~D~~lLL~stkpLl~S~n~sVVmA~aql~y~lAP~~~----~~~  322 (968)
T KOG1060|consen  247 HQLPDPTVVDSSLEDNGRSCNLKDKYNEIRTPYVNDPDLKLLLQSTKPLLQSRNPSVVMAVAQLFYHLAPKNQ----VTK  322 (968)
T ss_pred             hcCCCccccccccccCcccccccccccccCCCcccCccHHHHHHhccHHHhcCCcHHHHHHHhHHHhhCCHHH----HHH
Confidence            211  100000000 01                        11222235667778888888888888875542    234


Q ss_pred             hHHHHHHHHh
Q 017249          319 VLEKIVYDIA  328 (375)
Q Consensus       319 ~~~~l~~~l~  328 (375)
                      ++++|++.|.
T Consensus       323 i~kaLvrLLr  332 (968)
T KOG1060|consen  323 IAKALVRLLR  332 (968)
T ss_pred             HHHHHHHHHh
Confidence            6788888775

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.46  E-value=0.0084  Score=52.28  Aligned_cols=220  Identities=17%  Similarity=0.145  Sum_probs=136.6

Q ss_pred             CChHHHHHHHHHHHHhhccCC---ChhHHH--hcCChHHHHHHh-------ccCC-----HHHHHHHHHHHHHhccCCCC
Q 017249          122 QNGTLRELAAAAILTLSAAAP---NKPAIA--ASGAAPLLVQIL-------HSGS-----VQGRVDAVTALHYLSTCKEN  184 (375)
Q Consensus       122 ~~~~~~~~a~~~L~~Ls~~~~---~~~~i~--~~~~l~~L~~lL-------~~~~-----~~~~~~a~~~L~~L~~~~~~  184 (375)
                      -+++.|+.|+   ..|+...+   +-..+.  ..|.+..|++=+       ..++     ..-..+|+..|..++++++.
T Consensus         7 ~~~~~Re~Al---~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpet   83 (262)
T PF04078_consen    7 CNPETRENAL---LELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPET   83 (262)
T ss_dssp             SSHHHHHHHH---HHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTT
T ss_pred             cCcchHHHHH---HHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHH
Confidence            3577777664   45554433   222222  347676665532       2222     23356777778888999999


Q ss_pred             chhhhhcCCcHHHHHHhhhccc---chHHHHHHHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          185 SSPILDATAVPPLINLLKDCKK---YSKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~~~---~~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      +..++++...-.|.-++...+.   .+.++..++++++.|..  +++....+. ....+|..+..++.++...+..|..+
T Consensus        84 r~~Fl~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl-~tEiiplcLr~me~GselSKtvAtfI  162 (262)
T PF04078_consen   84 RMPFLKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLL-QTEIIPLCLRIMEFGSELSKTVATFI  162 (262)
T ss_dssp             HHHHHHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHH-CTTHHHHHHHHHHHS-HHHHHHHHHH
T ss_pred             HHHHHHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHH-hhchHHHHHHHHHhccHHHHHHHHHH
Confidence            9999998877777777765432   34677889999999987  466677777 68999999999999999999999999


Q ss_pred             HHHhcccCcHHHHHHH-------HH-cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHH--H
Q 017249          260 LLSLCQSCRDKYRQLI-------LK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYD--I  327 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l-------~~-~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~--l  327 (375)
                      +..+-.++  .+...+       .. ..++..++. +....+++.-++..++--.|+++++. .+.. ..+|..+..  .
T Consensus       163 lqKIL~dd--~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnprar~aL~-~~LP~~Lrd~~f  239 (262)
T PF04078_consen  163 LQKILLDD--VGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNPRAREALR-QCLPDQLRDGTF  239 (262)
T ss_dssp             HHHHHHSH--HHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTSTTHHHHHH-HHS-GGGTSSTT
T ss_pred             HHHHHcch--hHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCHHHHHHHH-HhCcHHHhcHHH
Confidence            98887654  222222       22 234444444 55678999999999999999999853 1111 122221111  0


Q ss_pred             hhcCCChHHHHHHHHHHHHHH
Q 017249          328 AARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       328 ~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      .....+++..+++-.+++.++
T Consensus       240 ~~~l~~D~~~k~~l~qLl~nl  260 (262)
T PF04078_consen  240 SNILKDDPSTKRWLQQLLSNL  260 (262)
T ss_dssp             TTGGCS-HHHHHHHHHHHHHT
T ss_pred             HHHHhcCHHHHHHHHHHHHHh
Confidence            000123466777776666654

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF09759 Atx10homo_assoc: Spinocerebellar ataxia type 10 protein domain; InterPro: IPR019156 This is the conserved C-terminal 100 residues of Ataxin-10

Probab=97.44  E-value=0.00056  Score=50.88  Aligned_cols=64  Identities=25%  Similarity=0.264  Sum_probs=55.7

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc--CCChHHHHHHHHHHHHhhccC-CChhHHH
Q 017249           85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK--FQNGTLRELAAAAILTLSAAA-PNKPAIA  148 (375)
Q Consensus        85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~  148 (375)
                      +...++.|+|++..++.+++.+.+.|++|.+++...  ..+|.++++|+.++.||+... +++..+.
T Consensus         3 K~~lvrlianl~~~~~~~Qd~vr~~~Gi~liL~~c~iD~~nP~irEwai~aiRnL~e~n~eNQ~~I~   69 (102)
T PF09759_consen    3 KRDLVRLIANLCYKNKEVQDLVRELGGIPLILSCCNIDDHNPFIREWAIFAIRNLCEGNPENQEFIA   69 (102)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHhcCCCcccHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            556789999999999999999999999999999764  448999999999999999875 4777665

Ataxin-10 belongs to the family of armadillo repeat proteins and in solution it tends to form homotrimeric complexes, which associate via a tip-to-tip association in a horseshoe-shaped contact with the concave sides of the molecules facing each other. This domain may represent the homo-association site since that is located near the C terminus of Ataxin-10. The protein does not contain a signal sequence for secretion or any subcellular compartment confirming its cytoplasmic localisation, specifically to the olivocerebellar region [].

>KOG3036 consensus Protein involved in cell differentiation/sexual development [General function prediction only]

Probab=97.41  E-value=0.011  Score=50.70  Aligned_cols=147  Identities=12%  Similarity=0.062  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc---ccchHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHH
Q 017249          165 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSS--EEGRIAITNSDGGIL  239 (375)
Q Consensus       165 ~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~  239 (375)
                      ..-..+|+..|..+++.++.+..++++...-.+-.+|..+   .+.+.++..++++++.|...  .+..+.+. ..++|+
T Consensus        93 snRVcnaL~LlQcvASHpdTr~~FL~A~iPlylYpfL~Tt~~~r~fEyLRLtsLGVIgaLvk~dd~eVi~fLl-~TeIVP  171 (293)
T KOG3036|consen   93 SNRVCNALALLQCVASHPDTRRAFLRAHIPLYLYPFLNTTSKSRPFEYLRLTSLGVIGALVKNDDQEVIRFLL-TTEIVP  171 (293)
T ss_pred             cchHHHHHHHHHHHhcCcchHHHHHHccChhhhHHhhhccccCCchHHHhHHHHHHHHHHHhcCcHHHHHHHH-HhhhHH
Confidence            3446788888999999999999999987666666666543   34557888899999999864  45566666 689999


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcccCcH--HHH---HHHHH-cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          240 TLVETVEDGSLVSTQHAVGALLSLCQSCRD--KYR---QLILK-EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~---~~l~~-~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ..+..+..|++..+..|..++..+..++..  -.+   +.+.. .-++..++. +...++++.-++++++.-+|+.+++-
T Consensus       172 lCLrime~GSelSKtvA~fIlqKIlldD~GL~YiCqt~eRF~av~~~L~kmv~~l~~~ps~RllKhviRcYlrLsdnpra  251 (293)
T KOG3036|consen  172 LCLRIMESGSELSKTVATFILQKILLDDVGLYYICQTAERFSAVALVLGKMVFQLVSMPSPRLLKHVIRCYLRLSDNPRA  251 (293)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHhhccccHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcCCHHH
Confidence            999999999999999999999888776531  111   11212 223344443 56678999999999999999998843

>KOG2259 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.41  E-value=0.011  Score=57.54  Aligned_cols=268  Identities=17%  Similarity=0.144  Sum_probs=162.4

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccCh------hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNE------RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~------~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      ....++.+++.+..++..|++.+.-+....+      .....+. -.++..+...+.+.+-.+|..|+.+|..+-...+ 
T Consensus       236 Y~~A~~~lsD~~e~VR~aAvqlv~v~gn~~p~~~e~e~~e~kl~-D~aF~~vC~~v~D~sl~VRV~AaK~lG~~~~vSe-  313 (823)
T KOG2259|consen  236 YSRAVKHLSDDYEDVRKAAVQLVSVWGNRCPAPLERESEEEKLK-DAAFSSVCRAVRDRSLSVRVEAAKALGEFEQVSE-  313 (823)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHHHHHHhcCCCcccchhhhhhhH-HHHHHHHHHHHhcCceeeeehHHHHhchHHHhHH-
Confidence            5567889999999999999877766654331      1111222 2356778888888888888888888877643211 


Q ss_pred             hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh--cc------------CCCCchhhhhcCCcHHHHHHhhhcccchH
Q 017249          144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL--ST------------CKENSSPILDATAVPPLINLLKDCKKYSK  209 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L--~~------------~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  209 (375)
                        .+.....=+.++.-++.. ....+.......+.  ++            .++....++.+|+--.++.-+.+.  --.
T Consensus       314 --e~i~QTLdKKlms~lRRk-r~ahkrpk~l~s~GewSsGk~~~advpsee~d~~~~siI~sGACGA~VhGlEDE--f~E  388 (823)
T KOG2259|consen  314 --EIIQQTLDKKLMSRLRRK-RTAHKRPKALYSSGEWSSGKEWNADVPSEEDDEEEESIIPSGACGALVHGLEDE--FYE  388 (823)
T ss_pred             --HHHHHHHHHHHhhhhhhh-hhcccchHHHHhcCCcccCccccccCchhhccccccccccccccceeeeechHH--HHH
Confidence              011000011111111100 00111111222222  00            122344567778888888888775  346


Q ss_pred             HHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh
Q 017249          210 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV  289 (375)
Q Consensus       210 ~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~  289 (375)
                      ++.+|...++.|+.+...-     ....++.|+.++.+.-..+|..|+.+|..++.+-       .++..-++.++..+.
T Consensus       389 VR~AAV~Sl~~La~ssP~F-----A~~aldfLvDMfNDE~~~VRL~ai~aL~~Is~~l-------~i~eeql~~il~~L~  456 (823)
T KOG2259|consen  389 VRRAAVASLCSLATSSPGF-----AVRALDFLVDMFNDEIEVVRLKAIFALTMISVHL-------AIREEQLRQILESLE  456 (823)
T ss_pred             HHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHh-------eecHHHHHHHHHHHH
Confidence            8899999999998653321     1246788999999988999999999999987653       245566788888999


Q ss_pred             hCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH---HHHHhHHHHHH
Q 017249          290 EGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR---SMELSMTRIQQ  362 (375)
Q Consensus       290 ~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~---s~~~~~~~~~~  362 (375)
                      +.++++|+..-.+|.++.-...+ .+. -.+.+|+..|..-    |+=+...-+++..+-+.   -.-.+|++|+.
T Consensus       457 D~s~dvRe~l~elL~~~~~~d~~-~i~-m~v~~lL~~L~ky----PqDrd~i~~cm~~iGqnH~~lv~s~m~rfl~  526 (823)
T KOG2259|consen  457 DRSVDVREALRELLKNARVSDLE-CID-MCVAHLLKNLGKY----PQDRDEILRCMGRIGQNHRRLVLSNMGRFLE  526 (823)
T ss_pred             hcCHHHHHHHHHHHHhcCCCcHH-HHH-HHHHHHHHHhhhC----CCCcHHHHHHHHHHhccChhhHHHHHHHHHH
Confidence            99999999998888876544422 111 1344454444322    23334455566666432   55667777773

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=97.40  E-value=0.0062  Score=52.83  Aligned_cols=201  Identities=18%  Similarity=0.169  Sum_probs=120.0

Q ss_pred             HHhhHhHHHHHHHHhc--CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           20 NQRKQALIEELSDKLI--NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~--s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      +....+.++.|+.-|.  +..|-++.+|..+|..+. .+           ..++.+-++.+++..++++.+..++..+-.
T Consensus        62 Q~~~~~Av~~l~~vl~desq~pmvRhEAaealga~~-~~-----------~~~~~l~k~~~dp~~~v~ETc~lAi~rle~  129 (289)
T KOG0567|consen   62 QMQDEDAVPVLVEVLLDESQEPMVRHEAAEALGAIG-DP-----------ESLEILTKYIKDPCKEVRETCELAIKRLEW  129 (289)
T ss_pred             hhccchhhHHHHHHhcccccchHHHHHHHHHHHhhc-ch-----------hhHHHHHHHhcCCccccchHHHHHHHHHHH
Confidence            4455667888887776  445667778888887776 22           234555555555555555555555554443


Q ss_pred             cChhhH----HHHH--------HcCChHHHHHhhcCC-ChHH-HHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC
Q 017249           98 RNERNK----VKIA--------TAGAIPPLVELLKFQ-NGTL-RELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG  163 (375)
Q Consensus        98 ~~~~~r----~~i~--------~~g~i~~Lv~lL~~~-~~~~-~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~  163 (375)
                      .+.-..    ....        ..+-+..+-..|... .+.. |..|...|.|+          +....|..|++-+..+
T Consensus       130 ~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~amF~LRn~----------g~EeaI~al~~~l~~~  199 (289)
T KOG0567|consen  130 KDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRAMFYLRNI----------GTEEAINALIDGLADD  199 (289)
T ss_pred             hhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhhhhHhhcc----------CcHHHHHHHHHhcccc
Confidence            211000    0000        000111111111111 1111 22222222222          1233566777777777


Q ss_pred             CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHH
Q 017249          164 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVE  243 (375)
Q Consensus       164 ~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~  243 (375)
                      +.-.+..++.++..|          ...-.++.|.+.|.+..+++.++..|..+|+.++           ...+++.|..
T Consensus       200 SalfrhEvAfVfGQl----------~s~~ai~~L~k~L~d~~E~pMVRhEaAeALGaIa-----------~e~~~~vL~e  258 (289)
T KOG0567|consen  200 SALFRHEVAFVFGQL----------QSPAAIPSLIKVLLDETEHPMVRHEAAEALGAIA-----------DEDCVEVLKE  258 (289)
T ss_pred             hHHHHHHHHHHHhhc----------cchhhhHHHHHHHHhhhcchHHHHHHHHHHHhhc-----------CHHHHHHHHH
Confidence            777888888888766          3345788999999888888888999999998765           5678888999


Q ss_pred             HhccCChHHHHHHHHHHHHh
Q 017249          244 TVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       244 lL~~~~~~~~~~a~~~L~~l  263 (375)
                      ++.+..+.+++.+..+|..+
T Consensus       259 ~~~D~~~vv~esc~valdm~  278 (289)
T KOG0567|consen  259 YLGDEERVVRESCEVALDML  278 (289)
T ss_pred             HcCCcHHHHHHHHHHHHHHH
Confidence            99988888888887777554

>PF04078 Rcd1: Cell differentiation family, Rcd1-like ; InterPro: IPR007216 Rcd1 (Required cell differentiation 1) -like proteins are found among a wide range of organisms []

Probab=97.37  E-value=0.011  Score=51.63  Aligned_cols=221  Identities=17%  Similarity=0.152  Sum_probs=141.2

Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhh-------cCCC--h---HHHHHHHHHHHHhhccCCChhHH
Q 017249           81 NLDAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELL-------KFQN--G---TLRELAAAAILTLSAAAPNKPAI  147 (375)
Q Consensus        81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~~--~---~~~~~a~~~L~~Ls~~~~~~~~i  147 (375)
                      +++.++.|+..|..--...++....+-. .|.+..|++=+       ..++  +   .-..+|+..|-.++.+++.+..+
T Consensus         8 ~~~~Re~Al~eLsk~r~~~~~La~~LW~s~G~i~~LLqEIisiYp~l~~~~Lt~~~snRVcnaLaLlQ~vAshpetr~~F   87 (262)
T PF04078_consen    8 NPETRENALLELSKKRESFPDLAPLLWHSFGTIAALLQEIISIYPALSPPNLTARQSNRVCNALALLQCVASHPETRMPF   87 (262)
T ss_dssp             SHHHHHHHHHHHHHTCCC-TTHHHHHHTSTTHHHHHHHHHHGGGGGTTTT---HHHHHHHHHHHHHHHHHHH-TTTHHHH
T ss_pred             CcchHHHHHHHHHHhhhcccchhHHHHcCCChHHHHHHHHHHHcccCCCcccCHHHHHHHHHHHHHHHHHHcChHHHHHH
Confidence            5677888888877765545555555555 45555554422       2221  1   22456777778889999999999


Q ss_pred             HhcCChHHHHHHhccCC-----HHHHHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHH
Q 017249          148 AASGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEI  220 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~  220 (375)
                      ......-.|...|+..+     ...+-.+++++..|...+  +....+.+.+.+|..++.+..+++-  -+-.|..++..
T Consensus        88 l~a~iplyLyPfL~tt~k~r~~E~LRLtsLGVIgaLvK~d~~evi~fLl~tEiiplcLr~me~Gsel--SKtvAtfIlqK  165 (262)
T PF04078_consen   88 LKAHIPLYLYPFLNTTSKTRPFEYLRLTSLGVIGALVKTDDPEVISFLLQTEIIPLCLRIMEFGSEL--SKTVATFILQK  165 (262)
T ss_dssp             HHTTGGGGGHHHHH----SHHHHHHHHHHHHHHHHHHTT--HHHHHHHHCTTHHHHHHHHHHHS-HH--HHHHHHHHHHH
T ss_pred             HHcCchhhehhhhhccccccccchhhHhHHHHHHHHHcCCcHHHHHHHHhhchHHHHHHHHHhccHH--HHHHHHHHHHH
Confidence            98887777888876553     456888999999998753  5566777899999999999988543  33447777777


Q ss_pred             hhCChhhhHHHhhccC-------cHHHHHH-HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH-----HH
Q 017249          221 LSSSEEGRIAITNSDG-------GILTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL-----RL  287 (375)
Q Consensus       221 l~~~~~~~~~~~~~~g-------~v~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~-----~l  287 (375)
                      +-.++.+-..+.....       .+..++. +...+++.+-+..+++-..|+.+.  ..+.++.+  .+|..+     .-
T Consensus       166 IL~dd~GL~yiC~t~eRf~av~~vL~~mV~~l~~~pS~RLLKhIIrCYlRLsdnp--rar~aL~~--~LP~~Lrd~~f~~  241 (262)
T PF04078_consen  166 ILLDDVGLNYICQTAERFFAVAMVLNKMVEQLVKQPSPRLLKHIIRCYLRLSDNP--RAREALRQ--CLPDQLRDGTFSN  241 (262)
T ss_dssp             HHHSHHHHHHHTSSHHHHHHHHHHHHHHHHHHHHS--HHHHHHHHHHHHHHTTST--THHHHHHH--HS-GGGTSSTTTT
T ss_pred             HHcchhHHHHHhcCHHHHHHHHHHHHHHHHHHccCCChhHHHHHHHHHHHHccCH--HHHHHHHH--hCcHHHhcHHHHH
Confidence            7666655554443222       2333332 335678899999999999999886  55776653  222222     22


Q ss_pred             hhhCCHHHHHHHHHHHHHhh
Q 017249          288 TVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       288 l~~~~~~~~~~A~~~L~~l~  307 (375)
                      +-.+|+.+++--..++.++.
T Consensus       242 ~l~~D~~~k~~l~qLl~nl~  261 (262)
T PF04078_consen  242 ILKDDPSTKRWLQQLLSNLN  261 (262)
T ss_dssp             GGCS-HHHHHHHHHHHHHTT
T ss_pred             HHhcCHHHHHHHHHHHHHhc
Confidence            22457888888777877764

Rcd1 was initially identified as an essential factor in nitrogen starvation-invoked differentiation in fission yeast. This results largely from a defect in nitrogen starvation-invoked induction of ste11+, a key transcriptional factor gene required for the onset of sexual development. It is one of the most conserved proteins in eukaryotes, and its mammalian homologue is expressed in a variety of differentiating tissues [, ]. The mammalian Rcd1 is a novel transcriptional cofactor and is critical for retinoic acid-induced differentiation of F9 mouse teratocarcinoma cells, at least in part, via forming complexes with retinoic acid receptor and activation transcription factor-2 (ATF-2) []. Two of the members in this family have been characterised as being involved in regulation of Ste11 regulated sex genes [, ].; PDB: 2FV2_B.

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=97.33  E-value=0.097  Score=53.63  Aligned_cols=238  Identities=17%  Similarity=0.161  Sum_probs=135.4

Q ss_pred             HHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc----CCC----hHHHHHH
Q 017249           64 FAAAGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK----FQN----GTLRELA  130 (375)
Q Consensus        64 ~~~~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~----~~~----~~~~~~a  130 (375)
                      +.+.||+..++.++.+     ...+.....+..|..+++ -+.+|..+++.|+++.|+..+.    .+.    +.+-+..
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~K-v~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~L  191 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCK-VKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQL  191 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHh-hHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHH
Confidence            3456899999998865     235667777888888887 6899999999999999999884    323    5555555


Q ss_pred             HHHHHHhhccCCC------hhHHH-------hcCChHHHHHHhccC----CHHHHHHHHHHHHHhccCCC-CchhhhhcC
Q 017249          131 AAAILTLSAAAPN------KPAIA-------ASGAAPLLVQILHSG----SVQGRVDAVTALHYLSTCKE-NSSPILDAT  192 (375)
Q Consensus       131 ~~~L~~Ls~~~~~------~~~i~-------~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g  192 (375)
                      +.++-.|......      .....       ....+..|++.+.++    ++.+....+++|-+|+.+++ ....+++  
T Consensus       192 L~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv~--  269 (802)
T PF13764_consen  192 LEIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALVE--  269 (802)
T ss_pred             HHHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHHH--
Confidence            5555544332111      01000       112367777777655    57889999999999997754 3344433  


Q ss_pred             CcHHHHHHhhh---cccchHHHHHHHHHHHHhhC----C---hhhhHHHhhccCcHHHHHHHhccCChH--------H--
Q 017249          193 AVPPLINLLKD---CKKYSKFAEKATALLEILSS----S---EEGRIAITNSDGGILTLVETVEDGSLV--------S--  252 (375)
Q Consensus       193 ~i~~Lv~ll~~---~~~~~~~~~~a~~~L~~l~~----~---~~~~~~~~~~~g~v~~Lv~lL~~~~~~--------~--  252 (375)
                      .+.+.+++=.-   .+.+..+   -+..++.++.    +   ..-+..++ +.|++...+.+|...-|.        .  
T Consensus       270 ~F~p~l~f~~~D~~~~~~~~~---~Le~F~~i~~~I~~~~~G~~LK~~Il-~~GIv~~a~~YL~~~~P~~~~~~s~eWk~  345 (802)
T PF13764_consen  270 HFKPYLDFDKFDEEHSPDEQF---KLECFCEIAEGIPNNSNGNRLKDKIL-ESGIVQDAIDYLLKHFPSLKNTDSPEWKE  345 (802)
T ss_pred             HHHHhcChhhcccccCchHHH---HHHHHHHHHhcCCCCCchHHHHHHHH-HhhHHHHHHHHHHHhCcccccCCCHHHHH
Confidence            22222221110   1111111   2444444442    2   24456666 789999999998543222        2  


Q ss_pred             ------HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249          253 ------TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       253 ------~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~  310 (375)
                            -..++..|.-||.++.+  .+.++..++++.+-.+=.. .+..+=.-|-.+|..+.+++
T Consensus       346 ~l~~psLp~iL~lL~GLa~gh~~--tQ~~~~~~~l~~lH~LEqvss~~~IGslAEnlLeal~~~~  408 (802)
T PF13764_consen  346 FLSRPSLPYILRLLRGLARGHEP--TQLLIAEQLLPLLHRLEQVSSEEHIGSLAENLLEALAENE  408 (802)
T ss_pred             HhcCCcHHHHHHHHHHHHhcCHH--HHHHHHhhHHHHHHHhhcCCCccchHHHHHHHHHHHhcCh
Confidence                  22456666666665522  2333445555333322221 23445555555666666544

>PF11841 DUF3361: Domain of unknown function (DUF3361)

Probab=97.31  E-value=0.0057  Score=49.37  Aligned_cols=123  Identities=18%  Similarity=0.144  Sum_probs=95.2

Q ss_pred             hhhhhcCCcHHHHHHhhhccc----chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHH
Q 017249          186 SPILDATAVPPLINLLKDCKK----YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGA  259 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~~----~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~  259 (375)
                      ..+.+.+|+..|++++.++..    ...+...++.++..|..+.-..=..+ +..++..++.++...  +..+...|+.+
T Consensus         5 ~EFI~~~Gl~~L~~~iE~g~~~~~~~~~~La~~L~af~eLMeHg~vsWd~l-~~~FI~Kia~~Vn~~~~d~~i~q~sLaI   83 (160)
T PF11841_consen    5 QEFISRDGLTLLIKMIEEGTEIQPCKGEILAYALTAFVELMEHGIVSWDTL-SDSFIKKIASYVNSSAMDASILQRSLAI   83 (160)
T ss_pred             HHHHhccCHHHHHHHHHcCCccCcchHHHHHHHHHHHHHHHhcCcCchhhc-cHHHHHHHHHHHccccccchHHHHHHHH
Confidence            346778999999999998864    23556677888888877654333455 467889999998753  47899999999


Q ss_pred             HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      |-+++.++ +.....+.+.=-++.|+..++..++++|.+|..++..|-...
T Consensus        84 LEs~Vl~S-~~ly~~V~~evt~~~Li~hLq~~~~~iq~naiaLinAL~~kA  133 (160)
T PF11841_consen   84 LESIVLNS-PKLYQLVEQEVTLESLIRHLQVSNQEIQTNAIALINALFLKA  133 (160)
T ss_pred             HHHHHhCC-HHHHHHHhccCCHHHHHHHHHcCCHHHHHHHHHHHHHHHhcC
Confidence            99999987 455566666678899999999999999999999887765444

>KOG1077 consensus Vesicle coat complex AP-2, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.27  E-value=0.051  Score=53.44  Aligned_cols=305  Identities=14%  Similarity=0.151  Sum_probs=180.0

Q ss_pred             HHHHhcCCC--HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh-HHHH
Q 017249           30 LSDKLINGD--LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN-KVKI  106 (375)
Q Consensus        30 Lv~~L~s~~--~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~-r~~i  106 (375)
                      +-++|.|++  .-++..|+-+|..+.+.. |+..   ..-+....++.+|.+.+-.+...+...+.-|++.+++. +-++
T Consensus       151 I~KlLvS~~~~~~vkqkaALclL~L~r~s-pDl~---~~~~W~~riv~LL~D~~~gv~ta~~sLi~~lvk~~p~~yk~~~  226 (938)
T KOG1077|consen  151 IPKLLVSGSSMDYVKQKAALCLLRLFRKS-PDLV---NPGEWAQRIVHLLDDQHMGVVTAATSLIEALVKKNPESYKTCL  226 (938)
T ss_pred             hHHHHhCCcchHHHHHHHHHHHHHHHhcC-cccc---ChhhHHHHHHHHhCccccceeeehHHHHHHHHHcCCHHHhhhH
Confidence            335565443  457788888888888776 3321   12256788999999988888888888888888765543 3222


Q ss_pred             HHcCChHHHHHhhc-------------CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHH-----
Q 017249          107 ATAGAIPPLVELLK-------------FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQ-----  166 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~-------------~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~-----  166 (375)
                      ..  ++..|.....             -+.|=++...+.+|.++-..++.-....--.+++.++.-.+.+  +..     
T Consensus       227 ~~--avs~L~riv~~~~t~~qdYTyy~vP~PWL~vKl~rlLq~~p~~~D~~~r~~l~evl~~iLnk~~~~~~~k~vq~~n  304 (938)
T KOG1077|consen  227 PL--AVSRLSRIVVVVGTSLQDYTYYFVPAPWLQVKLLRLLQIYPTPEDPSTRARLNEVLERILNKAQEPPKSKKVQHSN  304 (938)
T ss_pred             HH--HHHHHHHHHhhcccchhhceeecCCChHHHHHHHHHHHhCCCCCCchHHHHHHHHHHHHHhccccCccccchHhhh
Confidence            21  1222222221             1345567777777777633322211111112233333333311  111     


Q ss_pred             HHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh
Q 017249          167 GRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV  245 (375)
Q Consensus       167 ~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL  245 (375)
                      .+...+.-..+|+.. ++....+..  .+..|-+++.+..  ..++-.++..++.|+.+......+- .+  .+.++..|
T Consensus       305 a~naVLFeaI~l~~h~D~e~~ll~~--~~~~Lg~fls~rE--~NiRYLaLEsm~~L~ss~~s~davK-~h--~d~Ii~sL  377 (938)
T KOG1077|consen  305 AKNAVLFEAISLAIHLDSEPELLSR--AVNQLGQFLSHRE--TNIRYLALESMCKLASSEFSIDAVK-KH--QDTIINSL  377 (938)
T ss_pred             hHHHHHHHHHHHHHHcCCcHHHHHH--HHHHHHHHhhccc--ccchhhhHHHHHHHHhccchHHHHH-HH--HHHHHHHh
Confidence            122222223344433 333333322  5566777777652  3566778888888888765555544 22  77888889


Q ss_pred             c-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC----hh--------
Q 017249          246 E-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP----QE--------  312 (375)
Q Consensus       246 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~----~~--------  312 (375)
                      + ..+..++..|+..|..+|..++.   +.     +|.-|++++.+.++.+|+.-+.=.+-|++.-    .+        
T Consensus       378 kterDvSirrravDLLY~mcD~~Na---k~-----IV~elLqYL~tAd~sireeivlKvAILaEKyAtDy~WyVdviLqL  449 (938)
T KOG1077|consen  378 KTERDVSIRRRAVDLLYAMCDVSNA---KQ-----IVAELLQYLETADYSIREEIVLKVAILAEKYATDYSWYVDVILQL  449 (938)
T ss_pred             ccccchHHHHHHHHHHHHHhchhhH---HH-----HHHHHHHHHhhcchHHHHHHHHHHHHHHHHhcCCcchhHHHHHHH
Confidence            8 67788999999999999987632   22     4567888888899999988776555565433    11        


Q ss_pred             -----hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHH-HHHHHHHHHHhHHH
Q 017249          313 -----KRLSSSVLEKIVYDIAARVDGADKAAETAKRLL-QDMVQRSMELSMTR  359 (375)
Q Consensus       313 -----~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l-~~l~~~s~~~~~~~  359 (375)
                           ..+..++|..++...   .+. +..++-|++-+ ..|-+-..+.+|..
T Consensus       450 iriagd~vsdeVW~RvvQiV---vNn-edlq~yaak~~fe~Lq~~a~hE~mVK  498 (938)
T KOG1077|consen  450 IRIAGDYVSDEVWYRVVQIV---VNN-EDLQGYAAKRLFEYLQKPACHENMVK  498 (938)
T ss_pred             HHHhcccccHHHHHHhheeE---ecc-hhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence                 344566888887654   344 67776666544 44445567777765

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=97.25  E-value=0.036  Score=50.68  Aligned_cols=193  Identities=19%  Similarity=0.199  Sum_probs=119.5

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---CCCchhh
Q 017249          114 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI  188 (375)
Q Consensus       114 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i  188 (375)
                      ..+..+.......|+.++..+.++....-....+.  ....++.+.+.++.+..+-+..|+.++.-++..   .+....+
T Consensus        47 ~~Id~l~eK~~~~Re~aL~~l~~~l~~~~~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~~ei  126 (309)
T PF05004_consen   47 EAIDLLTEKSSSTREAALEALIRALSSRYLPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDSEEI  126 (309)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccHHHH
Confidence            34444555668889999998888776544333332  234677888888888876677777777766643   2344444


Q ss_pred             hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHH--Hhcc----------CChHH
Q 017249          189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVE--TVED----------GSLVS  252 (375)
Q Consensus       189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~--lL~~----------~~~~~  252 (375)
                      .+ ...|.|.+++.+++....++..|+.+|+-++.    .++.....+   ..+..++.  +++.          +++.+
T Consensus       127 ~~-~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~---~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  127 FE-ELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELM---ESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HH-HHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHH---HHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            44 47888888888776555565566666665442    122222111   12332221  1221          12457


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      ...|+....-|...-++...... -...++.|..++.+.+..+|..|-.+|..|.+..+
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~-~~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~~~  260 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDL-LEEALPALSELLDSDDVDVRIAAGEAIALLYELAR  260 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh
Confidence            77777777766655432112221 24568999999999999999999999998866553

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=97.23  E-value=0.015  Score=60.28  Aligned_cols=268  Identities=16%  Similarity=0.119  Sum_probs=164.4

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc---cChhh
Q 017249           27 IEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV---RNERN  102 (375)
Q Consensus        27 l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~---~~~~~  102 (375)
                      ++.+...++ -...+.|..|+..|..++..-+++.+-    .-++|.++-++.++..+||..|+.+|..+-.   +-+..
T Consensus       424 vs~lts~IR~lk~~~tK~~ALeLl~~lS~~i~de~~L----DRVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~  499 (1431)
T KOG1240|consen  424 VSVLTSCIRALKTIQTKLAALELLQELSTYIDDEVKL----DRVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPS  499 (1431)
T ss_pred             HHHHHHHHHhhhcchhHHHHHHHHHHHhhhcchHHHH----hhhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcc
Confidence            444445554 245788999999999999876333322    2468999999999999999999999888653   23344


Q ss_pred             HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhc------------------cCCCh-hHH----------HhcCC
Q 017249          103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSA------------------AAPNK-PAI----------AASGA  152 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~------------------~~~~~-~~i----------~~~~~  152 (375)
                      -..+.-.-.+|.|-.++.+. ...+|..-+.+|..|+.                  ++++- ...          ...++
T Consensus       500 daniF~eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V  579 (1431)
T KOG1240|consen  500 DANIFPEYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAYRFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTV  579 (1431)
T ss_pred             cchhhHhhhhhhhHhhhccCccceehhhHHhhHHHHHHHHHHHHHHHHHHHhcccccCcccccccccccchHHHHHHHHH
Confidence            45566666788888888773 34445444444544431                  11111 000          01112


Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249          153 APLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                      -+....+|.++.+-++...+..|.-||..  .+-    .+.=.++.|+..|.+.  +..++.+-..-|..+|..-..|. 
T Consensus       580 ~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk~k----sND~iLshLiTfLNDk--Dw~LR~aFfdsI~gvsi~VG~rs-  652 (1431)
T KOG1240|consen  580 EQMVSSLLSDSPPIVKRALLESIIPLCVFFGKEK----SNDVILSHLITFLNDK--DWRLRGAFFDSIVGVSIFVGWRS-  652 (1431)
T ss_pred             HHHHHHHHcCCchHHHHHHHHHHHHHHHHhhhcc----cccchHHHHHHHhcCc--cHHHHHHHHhhccceEEEEeeee-
Confidence            22344456666677777777777777742  110    0122567788888775  33444222222222222222221 


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                       + +...+|.|.+-|.++.+.+...|+++|..|+..+.   .++..=..+++...-++-.++.=+|..++.++....+.-
T Consensus       653 -~-seyllPLl~Q~ltD~EE~Viv~aL~~ls~Lik~~l---l~K~~v~~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~~l  727 (1431)
T KOG1240|consen  653 -V-SEYLLPLLQQGLTDGEEAVIVSALGSLSILIKLGL---LRKPAVKDILQDVLPLLCHPNLWIRRAVLGIIAAIARQL  727 (1431)
T ss_pred             -H-HHHHHHHHHHhccCcchhhHHHHHHHHHHHHHhcc---cchHHHHHHHHhhhhheeCchHHHHHHHHHHHHHHHhhh
Confidence             2 45778888899999999999999999999987652   112222334445555666788899999999887776543

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.23  E-value=0.00074  Score=44.49  Aligned_cols=55  Identities=24%  Similarity=0.166  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249           82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL  137 (375)
Q Consensus        82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  137 (375)
                      +.+|..|+++|++++...++.- .-+...+++.|+.+|+++++.+|..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~~-~~~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPELL-QPYLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHHH-HHHHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHHH-HHHHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            4689999999999887544333 335567899999999999999999999999875

...

>PF13513 HEAT_EZ: HEAT-like repeat; PDB: 2Z5J_A 2OT8_B 2Z5O_A 2H4M_A 2QMR_A 1QBK_B 2Z5M_A 2Z5K_A 2Z5N_A 1GCJ_B

Probab=97.22  E-value=0.00063  Score=44.81  Aligned_cols=55  Identities=22%  Similarity=0.163  Sum_probs=44.8

Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                      +.+|..|+++|.+++....+. ... ....+++.|..++.++++.||..|+++|.+|
T Consensus         1 p~vR~~A~~aLg~l~~~~~~~-~~~-~~~~~~~~L~~~L~d~~~~VR~~A~~aLg~l   55 (55)
T PF13513_consen    1 PRVRRAAAWALGRLAEGCPEL-LQP-YLPELLPALIPLLQDDDDSVRAAAAWALGNL   55 (55)
T ss_dssp             HHHHHHHHHHHHCTTTTTHHH-HHH-HHHHHHHHHHHHTTSSSHHHHHHHHHHHHCH
T ss_pred             CHHHHHHHHHHhhHhcccHHH-HHH-HHHHHHHHHHHHHcCCCHHHHHHHHHHHhcC
Confidence            357899999999988776332 222 4578999999999999999999999999865

...

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=97.20  E-value=0.0024  Score=53.84  Aligned_cols=125  Identities=18%  Similarity=0.177  Sum_probs=89.7

Q ss_pred             cCCHHHHHHHHHHHHHhccCCCCchhhhhc----------------CCcHHHHHHhhhc-----ccchHHHHHHHHHHHH
Q 017249          162 SGSVQGRVDAVTALHYLSTCKENSSPILDA----------------TAVPPLINLLKDC-----KKYSKFAEKATALLEI  220 (375)
Q Consensus       162 ~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~----------------g~i~~Lv~ll~~~-----~~~~~~~~~a~~~L~~  220 (375)
                      .++......++.+|.||+..++.+..+.+.                ..+..|+..+..+     +.. .-......++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~-~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRSDSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKK-DNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccchHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCC-cchhHHHHHHHH
Confidence            344455667888999999887766655432                2567788777661     222 234678899999


Q ss_pred             hhCChhhhHHHhhcc-Cc--HHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH---cCChHHHHHHhh
Q 017249          221 LSSSEEGRIAITNSD-GG--ILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK---EGAIPGLLRLTV  289 (375)
Q Consensus       221 l~~~~~~~~~~~~~~-g~--v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~---~g~v~~L~~ll~  289 (375)
                      ++..+++|+.++... +.  +..|+.++.+.+...|..++++|.|+|...  +....+..   .+++|.|+--+.
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~--~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDT--DSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccH--hHHHHhcCchhhhhHHHHHhhcc
Confidence            999999999999533 23  678888888888888999999999999987  33455554   356676666554

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>COG5181 HSH155 U2 snRNP spliceosome subunit [RNA processing and modification]

Probab=97.19  E-value=0.012  Score=56.83  Aligned_cols=147  Identities=18%  Similarity=0.148  Sum_probs=96.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChh--hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC---Ch
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNER--NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP---NK  144 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~--~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---~~  144 (375)
                      +..++..|+++.+.+++.|+...+.|+.--..  .-..+...|.  .|.+-|....+++.-..+.++..+.....   -+
T Consensus       606 vStiL~~L~~k~p~vR~~aadl~~sl~~vlk~c~e~~~l~klg~--iLyE~lge~ypEvLgsil~Ai~~I~sv~~~~~mq  683 (975)
T COG5181         606 VSTILKLLRSKPPDVRIRAADLMGSLAKVLKACGETKELAKLGN--ILYENLGEDYPEVLGSILKAICSIYSVHRFRSMQ  683 (975)
T ss_pred             HHHHHHHhcCCCccHHHHHHHHHHHHHHHHHhcchHHHHHHHhH--HHHHhcCcccHHHHHHHHHHHHHHhhhhcccccC
Confidence            44567788999999999999988888741100  0122333332  35666677788887777777776654322   23


Q ss_pred             hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      +.+  .|.+|.|..+|++....++.+....+..++...+...-..+ -..--.|+++|.+.  ...++.+|...++.++
T Consensus       684 pPi--~~ilP~ltPILrnkh~Kv~~nti~lvg~I~~~~peyi~~rEWMRIcfeLvd~Lks~--nKeiRR~A~~tfG~Is  758 (975)
T COG5181         684 PPI--SGILPSLTPILRNKHQKVVANTIALVGTICMNSPEYIGVREWMRICFELVDSLKSW--NKEIRRNATETFGCIS  758 (975)
T ss_pred             Cch--hhccccccHhhhhhhHHHhhhHHHHHHHHHhcCcccCCHHHHHHHHHHHHHHHHHh--hHHHHHhhhhhhhhHH
Confidence            333  58899999999999999999999999999865322111111 11233466666665  3467888888887765

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=97.17  E-value=0.053  Score=54.75  Aligned_cols=228  Identities=14%  Similarity=0.079  Sum_probs=156.6

Q ss_pred             CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHH
Q 017249           78 VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLL  156 (375)
Q Consensus        78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L  156 (375)
                      .+..+...-.+.+++...+...+.+...+..  .+...+..+. +..+.++..|+.+++..+.......  ..++.++.|
T Consensus       460 ~~e~P~Ll~Ra~~~i~~fs~~~~~~~~~~~~--fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~~vl~~--~~p~ild~L  535 (1005)
T KOG2274|consen  460 YQESPFLLLRAFLTISKFSSSTVINPQLLQH--FLNATVNALTMDVPPPVKISAVRAFCGYCKVKVLLS--LQPMILDGL  535 (1005)
T ss_pred             cccCHHHHHHHHHHHHHHHhhhccchhHHHH--HHHHHHHhhccCCCCchhHHHHHHHHhccCceeccc--cchHHHHHH
Confidence            3445666668888888776643333332221  2233444443 3356677777777777662111111  235678888


Q ss_pred             HHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249          157 VQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  236 (375)
Q Consensus       157 ~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  236 (375)
                      .++....+.++......+|+..+..+.-.....++...|..+.++...++++.+...+-.++..++....+..-+.  ..
T Consensus       536 ~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m~--e~  613 (1005)
T KOG2274|consen  536 LQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPMQ--ER  613 (1005)
T ss_pred             HHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcchH--HH
Confidence            8888878888888888999988877766666677788899998888777777888888888888887666665555  36


Q ss_pred             cHHHHHHHhccCC----hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          237 GILTLVETVEDGS----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       237 ~v~~Lv~lL~~~~----~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      .+|.+++.|..+.    .....-|+.+|..+..+.++..-+.++ .-+.|++.+ .+++++..+-..+..+|+.+-...+
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            8999999997554    667778888888777776544333333 345666766 5778899999999999999887763


Q ss_pred             h
Q 017249          312 E  312 (375)
Q Consensus       312 ~  312 (375)
                      +
T Consensus       693 e  693 (1005)
T KOG2274|consen  693 E  693 (1005)
T ss_pred             H
Confidence            3

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=97.10  E-value=0.014  Score=55.62  Aligned_cols=166  Identities=16%  Similarity=0.107  Sum_probs=121.2

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC----HHHHHHHHHHHHHhccCCCCchh
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS----VQGRVDAVTALHYLSTCKENSSP  187 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L~~L~~~~~~~~~  187 (375)
                      ...+++++.+++...+..++..|..++.+......+....++..|..++.+++    .++....+.++..|-...-....
T Consensus        85 a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW~  164 (713)
T KOG2999|consen   85 AKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSWE  164 (713)
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeeee
Confidence            34678888888888888899999999888777777788889999999998875    35677777777777654333333


Q ss_pred             hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      .+...++.....+..-...+..+...|+.+|.++..+.....+.+.++-.+..|+.++...+..++.+|...|-.+....
T Consensus       165 ~~~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~~~a  244 (713)
T KOG2999|consen  165 SVSNDFVVSMASYVNAKREDANTLLAALQMLESLVLGSDTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALFRKA  244 (713)
T ss_pred             ecccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCChHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHHhhC
Confidence            34444555555555433334456788999999998877665666657788999999999999999999888888776665


Q ss_pred             cHHHHHHHHH
Q 017249          268 RDKYRQLILK  277 (375)
Q Consensus       268 ~~~~~~~l~~  277 (375)
                      .++-+..+.+
T Consensus       245 ~~~~R~~~~~  254 (713)
T KOG2999|consen  245 PDDKRFEMAK  254 (713)
T ss_pred             ChHHHHHHHH
Confidence            4444544544

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=97.05  E-value=0.13  Score=50.24  Aligned_cols=132  Identities=22%  Similarity=0.236  Sum_probs=91.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      ....++..-+ ++...+.-|+..|..+...- |+..+.     ++..++.+..+++..+|..|++.|-.+|.++++.-..
T Consensus        24 ~y~~il~~~k-g~~k~K~Laaq~I~kffk~F-P~l~~~-----Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~~~~v~k   96 (556)
T PF05918_consen   24 DYKEILDGVK-GSPKEKRLAAQFIPKFFKHF-PDLQEE-----AINAQLDLCEDEDVQIRKQAIKGLPQLCKDNPEHVSK   96 (556)
T ss_dssp             HHHHHHHGGG-S-HHHHHHHHHHHHHHHCC--GGGHHH-----HHHHHHHHHT-SSHHHHHHHHHHGGGG--T--T-HHH
T ss_pred             HHHHHHHHcc-CCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhcccHHHHHHHHHhHHHHHHhHHHHHhH
Confidence            4455555554 57889999999999999877 666654     4789999999999999999999999999988877777


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc---cCCHHHHHHHHHHHH
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH---SGSVQGRVDAVTALH  176 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~---~~~~~~~~~a~~~L~  176 (375)
                      ++.     .|+++|.+.++.-...+-.+|..|...++       .+.+..|...+.   +++..+++.++..|.
T Consensus        97 vaD-----vL~QlL~tdd~~E~~~v~~sL~~ll~~d~-------k~tL~~lf~~i~~~~~~de~~Re~~lkFl~  158 (556)
T PF05918_consen   97 VAD-----VLVQLLQTDDPVELDAVKNSLMSLLKQDP-------KGTLTGLFSQIESSKSGDEQVRERALKFLR  158 (556)
T ss_dssp             HHH-----HHHHHTT---HHHHHHHHHHHHHHHHH-H-------HHHHHHHHHHHH---HS-HHHHHHHHHHHH
T ss_pred             HHH-----HHHHHHhcccHHHHHHHHHHHHHHHhcCc-------HHHHHHHHHHHHhcccCchHHHHHHHHHHH
Confidence            754     89999998887666666667766644322       355666666665   567778888887765

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.99  E-value=0.045  Score=55.17  Aligned_cols=141  Identities=19%  Similarity=0.156  Sum_probs=101.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .++.+++...+.|.+.|+-.=-.+...+... |+ .-.+    .+..+.+=++++++.+|-.|++++..+=.  ++.-..
T Consensus        56 Lf~dViK~~~trd~ElKrL~ylYl~~yak~~-P~-~~lL----avNti~kDl~d~N~~iR~~AlR~ls~l~~--~el~~~  127 (757)
T COG5096          56 LFPDVIKNVATRDVELKRLLYLYLERYAKLK-PE-LALL----AVNTIQKDLQDPNEEIRGFALRTLSLLRV--KELLGN  127 (757)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHhccC-HH-HHHH----HHHHHHhhccCCCHHHHHHHHHHHHhcCh--HHHHHH
Confidence            3455555555556666665555666666655 21 1111    36667777888999999999999987643  223322


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                           .++++.+++.++++.+|..|+-++.++-.-+  +....+.|.+..+..++.+.++.+..+|+.+|..+-..
T Consensus       128 -----~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g~~~~l~~l~~D~dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         128 -----IIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELGLIDILKELVADSDPIVIANALASLAEIDPE  196 (757)
T ss_pred             -----HHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--HhhhhcccHHHHHHHHhhCCCchHHHHHHHHHHHhchh
Confidence                 4679999999999999999999999986543  34445678888899999999999999999999887543

>COG5215 KAP95 Karyopherin (importin) beta [Intracellular trafficking and secretion]

Probab=96.97  E-value=0.4  Score=46.45  Aligned_cols=339  Identities=12%  Similarity=0.052  Sum_probs=186.4

Q ss_pred             hHhHHHHHHHH----hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           23 KQALIEELSDK----LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        23 ~~~~l~~Lv~~----L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      ....+.+...+    ++++++.-+..|+.++.....+..+.++..++ ...+|.+..+..++..-++..++|+++.++..
T Consensus       360 gd~i~~pVl~FvEqni~~~~w~nreaavmAfGSvm~gp~~~~lT~~V-~qalp~i~n~m~D~~l~vk~ttAwc~g~iad~  438 (858)
T COG5215         360 GDKIMRPVLGFVEQNIRSESWANREAAVMAFGSVMHGPCEDCLTKIV-PQALPGIENEMSDSCLWVKSTTAWCFGAIADH  438 (858)
T ss_pred             hhHhHHHHHHHHHHhccCchhhhHHHHHHHhhhhhcCccHHHHHhhH-HhhhHHHHHhcccceeehhhHHHHHHHHHHHH
Confidence            33445555544    45889999999999999999888344444444 56788888888888888899999999999863


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcC---CChHHHHHHHHHHHHhhccCCC----hhHHHhcCChHHHHHHhc------cCCH
Q 017249           99 NERNKVKIATAGAIPPLVELLKF---QNGTLRELAAAAILTLSAAAPN----KPAIAASGAAPLLVQILH------SGSV  165 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~----~~~i~~~~~l~~L~~lL~------~~~~  165 (375)
                         ....+-..|-++..++.+--   ..|....++.|..-||..+-..    .+.+. ....+.++.-|-      .++.
T Consensus       439 ---va~~i~p~~Hl~~~vsa~liGl~D~p~~~~ncsw~~~nlv~h~a~a~~~~~S~l-~~fY~ai~~~Lv~~t~~~~Ne~  514 (858)
T COG5215         439 ---VAMIISPCGHLVLEVSASLIGLMDCPFRSINCSWRKENLVDHIAKAVREVESFL-AKFYLAILNALVKGTELALNES  514 (858)
T ss_pred             ---HHHhcCccccccHHHHHHHhhhhccchHHhhhHHHHHhHHHhhhhhhccccchh-HHHHHHHHHHHHHHHHhhccch
Confidence               22222234555555554322   2566677888888888755221    11111 122222222221      2233


Q ss_pred             HHHHHHHHHHHHhccC-CCCchhhhh----------cCCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhC-ChhhhHHH
Q 017249          166 QGRVDAVTALHYLSTC-KENSSPILD----------ATAVPPLINLLKDCK--KYSKFAEKATALLEILSS-SEEGRIAI  231 (375)
Q Consensus       166 ~~~~~a~~~L~~L~~~-~~~~~~i~~----------~g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~~  231 (375)
                      ..+..+..+|..|... ++....+..          ...+..+-+.+...+  ....++-+-+.+|..+.. .+...+..
T Consensus       515 n~R~s~fsaLgtli~~~~d~V~~~~a~~~~~~~~kl~~~isv~~q~l~~eD~~~~~elqSN~~~vl~aiir~~~~~ie~v  594 (858)
T COG5215         515 NLRVSLFSALGTLILICPDAVSDILAGFYDYTSKKLDECISVLGQILATEDQLLVEELQSNYIGVLEAIIRTRRRDIEDV  594 (858)
T ss_pred             hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhcCCCcccH
Confidence            4566666666655422 222221110          011222222222111  011233334444443332 22211111


Q ss_pred             hhccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          232 TNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       232 ~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .  .-....++++|.+.+ ..+-.....++.+++..-  +-+-+..-..++|-|.+.+...+..+.-.|+.++.-+++.-
T Consensus       595 ~--D~lm~Lf~r~les~~~t~~~~dV~~aIsal~~sl--~e~Fe~y~~~fiPyl~~aln~~d~~v~~~avglvgdlantl  670 (858)
T COG5215         595 E--DQLMELFIRILESTKPTTAFGDVYTAISALSTSL--EERFEQYASKFIPYLTRALNCTDRFVLNSAVGLVGDLANTL  670 (858)
T ss_pred             H--HHHHHHHHHHHhccCCchhhhHHHHHHHHHHHHH--HHHHHHHHhhhhHHHHHHhcchhHHHHHHHHHHHHHHHHHh
Confidence            1  124445566676653 444556677777776643  11333445789999999888888889999999999988765


Q ss_pred             hh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH-------HHHHHHHhHHHHHHHhhhcCCCC
Q 017249          311 QE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM-------VQRSMELSMTRIQQRAASSAPSK  371 (375)
Q Consensus       311 ~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l-------~~~s~~~~~~~~~~~~~~~~~~~  371 (375)
                      ..  ..........|+..|.++... +..|.........+       .+-=++.=|.=+.|-.+...|++
T Consensus       671 ~~df~~y~d~~ms~LvQ~lss~~~~-R~lKPaiLSvFgDIAlaiga~F~~YL~~im~L~qqas~~~p~~~  739 (858)
T COG5215         671 GTDFNIYADVLMSSLVQCLSSEATH-RDLKPAILSVFGDIALAIGANFESYLDMIMMLFQQASELDPHSD  739 (858)
T ss_pred             hhhHHHHHHHHHHHHHHHhcChhhc-cccchHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCC
Confidence            43  334455777777777643322 44444333333322       22234555556666666665554

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.96  E-value=0.12  Score=53.96  Aligned_cols=227  Identities=12%  Similarity=0.088  Sum_probs=135.4

Q ss_pred             CCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHH
Q 017249           78 VSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPL  155 (375)
Q Consensus        78 ~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~  155 (375)
                      ++.+..+|..+.+.|..++.. +........  ......|.+-+++.+...+...+.+|..|....+.-........|+-
T Consensus       664 ~~~~~~vQkK~yrlL~~l~~~-~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~k~I~E  742 (1176)
T KOG1248|consen  664 NSSSTKVQKKAYRLLEELSSS-PSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIPKLIPE  742 (1176)
T ss_pred             ccccHHHHHHHHHHHHHHhcC-CchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            344688999999999999975 333322222  12344555555666677788888888887655442111112233444


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhcc--C---CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHH--HHHHhhCC-hhh
Q 017249          156 LVQILHSGSVQGRVDAVTALHYLST--C---KENSSPILDATAVPPLINLLKDCKKYSKFAEKATA--LLEILSSS-EEG  227 (375)
Q Consensus       156 L~~lL~~~~~~~~~~a~~~L~~L~~--~---~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~--~L~~l~~~-~~~  227 (375)
                      ++-.++..+...++.+..+|..++.  .   +.+-.   ....+...+.++..+-..+.....+..  ++..+... ...
T Consensus       743 vIL~~Ke~n~~aR~~Af~lL~~i~~i~~~~d~g~e~---~~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e~~~~  819 (1176)
T KOG1248|consen  743 VILSLKEVNVKARRNAFALLVFIGAIQSSLDDGNEP---ASAILNEFLSIISAGLVGDSTRVVASDIVAITHILQEFKNI  819 (1176)
T ss_pred             HHHhcccccHHHHhhHHHHHHHHHHHHhhhcccccc---hHHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHHHhcc
Confidence            4434477788889999999998873  1   11111   111444555555544111122222222  22222221 111


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      -.... -.+.+..+..+|.+.++.++..|++.+..++..-+ +..-.-....+++.+..+.++....++.+.-.+|..|.
T Consensus       820 ld~~~-l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~p-e~~l~~~~~~LL~sll~ls~d~k~~~r~Kvr~LlekLi  897 (1176)
T KOG1248|consen  820 LDDET-LEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFP-EECLSPHLEELLPSLLALSHDHKIKVRKKVRLLLEKLI  897 (1176)
T ss_pred             ccHHH-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCC-HHHHhhhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHH
Confidence            11111 13455666677788999999999999999988763 32222223458899999999989999999999999887


Q ss_pred             cCC
Q 017249          308 DTP  310 (375)
Q Consensus       308 ~~~  310 (375)
                      +..
T Consensus       898 rkf  900 (1176)
T KOG1248|consen  898 RKF  900 (1176)
T ss_pred             HHh
Confidence            655

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.89  E-value=0.0029  Score=48.38  Aligned_cols=71  Identities=17%  Similarity=0.217  Sum_probs=61.4

Q ss_pred             ChHHHHHhh-CCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhc
Q 017249           69 VVQPLVLML-VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA  139 (375)
Q Consensus        69 ~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~  139 (375)
                      .+..|+++| .+.++.+..-|+.-|+.++...|..|..+-+.|+-..+++++.+++++++..|+.++..+..
T Consensus        44 llk~L~~lL~~s~d~~~laVac~Dig~~vr~~p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   44 LLKKLIKLLDKSDDPTTLAVACHDIGEFVRHYPNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             HHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH-GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCCCcceeehhhcchHHHHHHChhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            588999999 45578888899999999999999888888889999999999999999999999999887643

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.87  E-value=0.026  Score=56.22  Aligned_cols=238  Identities=15%  Similarity=0.073  Sum_probs=152.1

Q ss_pred             hhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH-HhhccChhhHHHHHHcCChHHHHHhhcCCChH-HHHHHHHHHHH
Q 017249           59 KTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL-NLAVRNERNKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILT  136 (375)
Q Consensus        59 ~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~-~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~-~~~~a~~~L~~  136 (375)
                      .-+...++.|+...|+.+..-+.+..+....++|. .+....  .+    ...+++++...+.+.... -...++.++.|
T Consensus       495 ~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~--~~----~~~v~~~~~s~~~~d~~~~en~E~L~altn  568 (748)
T KOG4151|consen  495 YERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPG--ER----SYEVVKPLDSALHNDEKGLENFEALEALTN  568 (748)
T ss_pred             HhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCC--Cc----hhhhhhhhcchhhhhHHHHHHHHHHHHhhc
Confidence            45556778899999999988777777777788777 333211  11    123455555555333211 13467788999


Q ss_pred             hhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-chhhhh-cCCcHHHHHHhhhcccchHHHHH
Q 017249          137 LSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-SSPILD-ATAVPPLINLLKDCKKYSKFAEK  213 (375)
Q Consensus       137 Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~-~~~i~~-~g~i~~Lv~ll~~~~~~~~~~~~  213 (375)
                      |+..++ .+..+....+++.+-..+...++..+..++.++.||..++.. ...+++ ....+.....+...  ......+
T Consensus       569 Las~s~s~r~~i~ke~~~~~ie~~~~ee~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~--~E~~~lA  646 (748)
T KOG4151|consen  569 LASISESDRQKILKEKALGKIEELMTEENPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVA--DEKFELA  646 (748)
T ss_pred             ccCcchhhHHHHHHHhcchhhHHHhhcccHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhh--hhHHhhh
Confidence            987755 566677777777777788888999999999999999987643 444555 33444444444332  3344455


Q ss_pred             HHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249          214 ATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT  292 (375)
Q Consensus       214 a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~  292 (375)
                      +.+++..+.. ....+..+.....+...++.++.++++.++...+.++.|+.... .+....++....++.+...-...-
T Consensus       647 ~a~a~a~I~sv~~n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~-~ei~~~~~~~~~~~~l~~~~~~~~  725 (748)
T KOG4151|consen  647 GAGALAAITSVVENHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL-FEIAEKIFETEVMELLSGLQKLNR  725 (748)
T ss_pred             ccccccchhhcchhhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH-HHHHHHhccchHHHHHHHHHHhhh
Confidence            5555554443 33333323334567888899999999999999999999966554 466666666677776666444333


Q ss_pred             HHHHHHHHHHHHH
Q 017249          293 FEAQERARTLLDL  305 (375)
Q Consensus       293 ~~~~~~A~~~L~~  305 (375)
                      .-.++.+..+|..
T Consensus       726 a~~~~~~~~~l~~  738 (748)
T KOG4151|consen  726 APKREDAAPCLSA  738 (748)
T ss_pred             hhhhhhhhhHHHH
Confidence            4444555444443

>KOG1824 consensus TATA-binding protein-interacting protein [General function prediction only]

Probab=96.87  E-value=0.16  Score=51.80  Aligned_cols=305  Identities=14%  Similarity=0.075  Sum_probs=171.6

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHHHH
Q 017249           33 KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKIAT  108 (375)
Q Consensus        33 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~  108 (375)
                      .+++.+...+..+...|..+...- +   ..+.++  ..+|.+..-|.+.  ....+..++..|.++-..++.-.-.=..
T Consensus       443 qlr~ks~kt~~~cf~lL~eli~~l-p---~~l~~~~~slvpgI~~~l~DkSsss~~ki~~L~fl~~~L~s~~p~~fhp~~  518 (1233)
T KOG1824|consen  443 QLREKSVKTRQGCFLLLTELINVL-P---GALAQHIPSLVPGIIYSLNDKSSSSNLKIDALVFLYSALISHPPEVFHPHL  518 (1233)
T ss_pred             HHhhccccchhhHHHHHHHHHHhC-c---chhhhcccccchhhhhhcCCccchHHHHHHHHHHHHHHHhcCChhhcccch
Confidence            344444446666777777776554 2   223332  3566777777554  3566777777777655433322111111


Q ss_pred             cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhH-HHh----cCChHHHHHHhccC--CHHHHHHHHHHHHHhc
Q 017249          109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPA-IAA----SGAAPLLVQILHSG--SVQGRVDAVTALHYLS  179 (375)
Q Consensus       109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~-i~~----~~~l~~L~~lL~~~--~~~~~~~a~~~L~~L~  179 (375)
                      .-..++++.....+-..+-..|+.+...+...-..  ... +..    ...+...++.|...  +.++++.|..++..+.
T Consensus       519 ~~Ls~~v~~aV~d~fyKisaEAL~v~~~lvkvirpl~~~~~~d~~~~v~~m~~~tl~rL~a~d~DqeVkeraIscmgq~i  598 (1233)
T KOG1824|consen  519 SALSPPVVAAVGDPFYKISAEALLVCQQLVKVIRPLQPPSSFDASPYVKTMYDCTLQRLKATDSDQEVKERAISCMGQII  598 (1233)
T ss_pred             hhhhhHHHHHhcCchHhhhHHHHHHHHHHHHHhcccCCCccCCCChhHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHH
Confidence            23355566666666666766777666666533111  100 111    12233444555544  6789999998887664


Q ss_pred             cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      ..-......--...++.+++-+.+.    .++..|.++++.++.++-.....-.-..+++.|.++++......+...+.+
T Consensus       599 ~~fgD~l~~eL~~~L~il~eRl~nE----iTRl~AvkAlt~Ia~S~l~i~l~~~l~~il~~l~~flrK~~r~lr~~~l~a  674 (1233)
T KOG1824|consen  599 ANFGDFLGNELPRTLPILLERLGNE----ITRLTAVKALTLIAMSPLDIDLSPVLTEILPELASFLRKNQRALRLATLTA  674 (1233)
T ss_pred             HHHhhhhhhhhHHHHHHHHHHHhch----hHHHHHHHHHHHHHhccceeehhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3211111100122444444444433    466778999998887765443211124678888888887666677766666


Q ss_pred             HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhHHHHHHHHhhcCCChHHH
Q 017249          260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKA  337 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~~~l~~~l~~~~~g~~~~  337 (375)
                      +-.+..+-.......+. .-++..+..++...+-++.+.|+.+|..+....+...  +..-+++.++..+.+     |-.
T Consensus       675 ~~~L~~~~~~~~~~~~~-e~vL~el~~Lisesdlhvt~~a~~~L~tl~~~~ps~l~~~~~~iL~~ii~ll~S-----pll  748 (1233)
T KOG1824|consen  675 LDKLVKNYSDSIPAELL-EAVLVELPPLISESDLHVTQLAVAFLTTLAIIQPSSLLKISNPILDEIIRLLRS-----PLL  748 (1233)
T ss_pred             HHHHHHHHhccccHHHH-HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhcccHHHHHHhhhhHHHHHHHhhC-----ccc
Confidence            66554432111111111 2244555567777889999999999999988886633  334477888777753     444


Q ss_pred             HHHHHHHHHHHHHH
Q 017249          338 AETAKRLLQDMVQR  351 (375)
Q Consensus       338 ~~~a~~~l~~l~~~  351 (375)
                      +..|-..+.++++.
T Consensus       749 qg~al~~~l~~f~a  762 (1233)
T KOG1824|consen  749 QGGALSALLLFFQA  762 (1233)
T ss_pred             cchHHHHHHHHHHH
Confidence            55666666666554

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.84  E-value=0.055  Score=51.13  Aligned_cols=237  Identities=15%  Similarity=0.015  Sum_probs=125.6

Q ss_pred             cCChHHHHH----hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccC
Q 017249           67 AGVVQPLVL----MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA  141 (375)
Q Consensus        67 ~g~v~~Lv~----~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~  141 (375)
                      .|.+..++.    -..+++..++..|++.|.+.+.+.|.-...... -.+..++.-|. ..+.+++-.+..+|..+...-
T Consensus       253 ~~lL~s~~~~la~ka~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~~~V~leam~~Lt~v~~~~  331 (533)
T KOG2032|consen  253 TGLLGSVLLSLANKATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLNEEVQLEAMKCLTMVLEKA  331 (533)
T ss_pred             cccHHHHHHHHHHhccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCccHHHHHHHHHHHHHHHhh
Confidence            455554444    345677889999999999999874443333222 23445555444 447888889999888876654


Q ss_pred             CChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhh---cCCcHHHHHHhhhcccchHHHHHHH
Q 017249          142 PNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILD---ATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       142 ~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~---~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                      .+..... -..+.-.+..+.++.+++.+..+..++..|+..  .+.+..+.+   .+..+.+ --+.+.+  +.+ ..|+
T Consensus       332 ~~~~l~~~~l~ialrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~ll-lhl~d~~--p~v-a~AC  407 (533)
T KOG2032|consen  332 SNDDLESYLLNIALRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLL-LHLQDPN--PYV-ARAC  407 (533)
T ss_pred             hhcchhhhchhHHHHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccce-eeeCCCC--hHH-HHHH
Confidence            4333221 123344677788899999999998888887743  233333332   2333333 3334432  222 2355


Q ss_pred             HHHHHhhCChhhhHHHhh-----------------c------cCcHHHHHHHh--------ccCChHHHHHHHHHHHHhc
Q 017249          216 ALLEILSSSEEGRIAITN-----------------S------DGGILTLVETV--------EDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       216 ~~L~~l~~~~~~~~~~~~-----------------~------~g~v~~Lv~lL--------~~~~~~~~~~a~~~L~~l~  264 (375)
                      +.....|.-.-.++....                 .      ....+.+..++        ...-+.+++.+...-.++.
T Consensus       408 r~~~~~c~p~l~rke~~~~~q~~ld~~~~~~q~Fyn~~c~~L~~i~~d~l~~~~t~~~~~f~sswe~vr~aavl~t~~~v  487 (533)
T KOG2032|consen  408 RSELRTCYPNLVRKELYHLFQESLDTDMARFQAFYNQWCIQLNHIHPDILMLLLTEDQHIFSSSWEQVREAAVLKTTRSV  487 (533)
T ss_pred             HHHHHhcCchhHHHHHHHHHhhhhHHhHHHHHHHHHHHHHHHhhhCHHHHHHHHHhchhheecchHHHHHHHHHHHHHHH
Confidence            554444433322222210                 0      00111111111        1112344444444444444


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      .+..++.+....-.-....|-.+..+.-|+++..|..+|..+..
T Consensus       488 d~l~~~~c~~~d~~qL~~~ls~l~~dp~pev~~~a~~al~~l~~  531 (533)
T KOG2032|consen  488 DSLVRAACSSADGLQLRSSLSTLWRDPRPEVTDSARKALDLLSV  531 (533)
T ss_pred             HHhHHHHHHHhhHHHHHHHHHHHccCCCchhHHHHHHHhhhHhh
Confidence            33322222222222344555666677788888888888876653

>KOG0567 consensus HEAT repeat-containing protein [General function prediction only]

Probab=96.77  E-value=0.33  Score=42.45  Aligned_cols=197  Identities=19%  Similarity=0.179  Sum_probs=117.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHH
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAI  147 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i  147 (375)
                      +..+.+...+++.......+.+|+....           ...++.|+..|...  .|-+|..|..+|.++.         
T Consensus        38 i~~i~ka~~d~s~llkhe~ay~LgQ~~~-----------~~Av~~l~~vl~desq~pmvRhEAaealga~~---------   97 (289)
T KOG0567|consen   38 IKAITKAFIDDSALLKHELAYVLGQMQD-----------EDAVPVLVEVLLDESQEPMVRHEAAEALGAIG---------   97 (289)
T ss_pred             HHHHHHhcccchhhhccchhhhhhhhcc-----------chhhHHHHHHhcccccchHHHHHHHHHHHhhc---------
Confidence            4555555555555555666667766554           34688999988654  5777889999998874         


Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-----chhhh--------hcCCcHHHHHHhhhcccchHHHHHH
Q 017249          148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-----SSPIL--------DATAVPPLINLLKDCKKYSKFAEKA  214 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~-----~~~i~--------~~g~i~~Lv~ll~~~~~~~~~~~~a  214 (375)
                       ....++.+-+..+++-..+...+..++..+-..+..     .....        ..+-+..+-..+.+.+.+.--+..+
T Consensus        98 -~~~~~~~l~k~~~dp~~~v~ETc~lAi~rle~~~~~~~~~~~~p~~SvdPa~p~~~ssv~~lr~~lld~t~~l~~Ry~a  176 (289)
T KOG0567|consen   98 -DPESLEILTKYIKDPCKEVRETCELAIKRLEWKDIIDKIANSSPYISVDPAPPANLSSVHELRAELLDETKPLFERYRA  176 (289)
T ss_pred             -chhhHHHHHHHhcCCccccchHHHHHHHHHHHhhccccccccCccccCCCCCccccccHHHHHHHHHhcchhHHHHHhh
Confidence             345567777777666677777777777776532111     11111        1112333333333322221112223


Q ss_pred             HHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--CC
Q 017249          215 TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GT  292 (375)
Q Consensus       215 ~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--~~  292 (375)
                      ...|+|+-           ....|..|+.-+..++...|..+..+++.|-+            .-.++.|.+.+.+  .+
T Consensus       177 mF~LRn~g-----------~EeaI~al~~~l~~~SalfrhEvAfVfGQl~s------------~~ai~~L~k~L~d~~E~  233 (289)
T KOG0567|consen  177 MFYLRNIG-----------TEEAINALIDGLADDSALFRHEVAFVFGQLQS------------PAAIPSLIKVLLDETEH  233 (289)
T ss_pred             hhHhhccC-----------cHHHHHHHHHhcccchHHHHHHHHHHHhhccc------------hhhhHHHHHHHHhhhcc
Confidence            33333221           12345666666767788888888888876632            3356777776653  46


Q ss_pred             HHHHHHHHHHHHHhhcCC
Q 017249          293 FEAQERARTLLDLLRDTP  310 (375)
Q Consensus       293 ~~~~~~A~~~L~~l~~~~  310 (375)
                      |.+|..|+.+|..++...
T Consensus       234 pMVRhEaAeALGaIa~e~  251 (289)
T KOG0567|consen  234 PMVRHEAAEALGAIADED  251 (289)
T ss_pred             hHHHHHHHHHHHhhcCHH
Confidence            889999999998887655

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=96.77  E-value=0.13  Score=47.35  Aligned_cols=210  Identities=12%  Similarity=0.050  Sum_probs=145.1

Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH-----HHHH--cCChHHHHHhhcCCChHHHHHHHHHHHH
Q 017249           64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV-----KIAT--AGAIPPLVELLKFQNGTLRELAAAAILT  136 (375)
Q Consensus        64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~-----~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  136 (375)
                      +...+.+..|+..|..-+.+.+..+.....++.......+.     .+..  ...+..|+.--+  ++++--.+-..|+.
T Consensus        72 i~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy~--~~dial~~g~mlRe  149 (335)
T PF08569_consen   72 IYRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGYE--NPDIALNCGDMLRE  149 (335)
T ss_dssp             HHHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGGG--STTTHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHhc--CccccchHHHHHHH
Confidence            44568899999999998999999999999998876544432     2322  223333333333  45555566677888


Q ss_pred             hhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc-cCCCCchhhhhc---CCcHHHHHHhhhcccchHHHH
Q 017249          137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDA---TAVPPLINLLKDCKKYSKFAE  212 (375)
Q Consensus       137 Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~  212 (375)
                      ...++.....+.....+..+.+.+..++-++...|..++..|- .+..........   ..+.....++.+++.  .++.
T Consensus       150 c~k~e~l~~~iL~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk~~~a~fl~~n~d~ff~~~~~Ll~s~NY--vtkr  227 (335)
T PF08569_consen  150 CIKHESLAKIILYSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHKKLVAEFLSNNYDRFFQKYNKLLESSNY--VTKR  227 (335)
T ss_dssp             HTTSHHHHHHHHTSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHCT-SSH--HHHH
T ss_pred             HHhhHHHHHHHhCcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCCe--Eeeh
Confidence            8777666666677778888999999999999999999999854 444444444432   466677788887753  5778


Q ss_pred             HHHHHHHHhhCChhhhHHHhh---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc--HHHHHHHHH
Q 017249          213 KATALLEILSSSEEGRIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR--DKYRQLILK  277 (375)
Q Consensus       213 ~a~~~L~~l~~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~  277 (375)
                      .++..|+.+-.++.+...+..   +..-+..++.+|++.+..+|-.|..++--+..+.+  +.....+..
T Consensus       228 qslkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~d~sk~Iq~eAFhvFKvFVANp~K~~~I~~iL~~  297 (335)
T PF08569_consen  228 QSLKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLRDKSKNIQFEAFHVFKVFVANPNKPPPIVDILIK  297 (335)
T ss_dssp             HHHHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT-S-HHHHHHHHHHHHHHHH-SS-BHHHHHHHHH
T ss_pred             hhHHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhcCcchhhhHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence            899999999988887665443   44567788899999999999999999998887653  233444443

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>COG5096 Vesicle coat complex, various subunits [Intracellular trafficking and secretion]

Probab=96.73  E-value=0.82  Score=46.46  Aligned_cols=168  Identities=15%  Similarity=0.093  Sum_probs=122.6

Q ss_pred             hcCCCHHHHHHHHH-HHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249           34 LINGDLETKIEAAR-DIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI  112 (375)
Q Consensus        34 L~s~~~~~~~~a~~-~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i  112 (375)
                      +.+.+...|+.|++ +|+.+..++  ....      ..+.+++...+.+.++++-.-.-|...+...|+....     ++
T Consensus        28 l~s~n~~~kidAmK~iIa~M~~G~--dmss------Lf~dViK~~~trd~ElKrL~ylYl~~yak~~P~~~lL-----av   94 (757)
T COG5096          28 LESSNDYKKIDAMKKIIAQMSLGE--DMSS------LFPDVIKNVATRDVELKRLLYLYLERYAKLKPELALL-----AV   94 (757)
T ss_pred             ccccChHHHHHHHHHHHHHHhcCC--ChHH------HHHHHHHHHHhcCHHHHHHHHHHHHHHhccCHHHHHH-----HH
Confidence            66777888999987 556666666  3222      2566777777889999998888888888866622222     25


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT  192 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g  192 (375)
                      ..+..=+.++++.+|..|++++..+=.      .-.....++++.+++.++++.++..|+-++.++=..+  .....+.|
T Consensus        95 Nti~kDl~d~N~~iR~~AlR~ls~l~~------~el~~~~~~~ik~~l~d~~ayVRk~Aalav~kly~ld--~~l~~~~g  166 (757)
T COG5096          95 NTIQKDLQDPNEEIRGFALRTLSLLRV------KELLGNIIDPIKKLLTDPHAYVRKTAALAVAKLYRLD--KDLYHELG  166 (757)
T ss_pred             HHHHhhccCCCHHHHHHHHHHHHhcCh------HHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHhcC--Hhhhhccc
Confidence            577788899999999999998888722      1223467899999999999999999999999886432  23334567


Q ss_pred             CcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          193 AVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      .+..+..++.+.  ++.+..+|+..|..+...
T Consensus       167 ~~~~l~~l~~D~--dP~Vi~nAl~sl~~i~~e  196 (757)
T COG5096         167 LIDILKELVADS--DPIVIANALASLAEIDPE  196 (757)
T ss_pred             HHHHHHHHhhCC--CchHHHHHHHHHHHhchh
Confidence            778888888776  456778888888766543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.70  E-value=0.74  Score=47.84  Aligned_cols=254  Identities=18%  Similarity=0.154  Sum_probs=149.5

Q ss_pred             HHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhc
Q 017249           19 WNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN-LDAIESSLLALLNLAV   97 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~~   97 (375)
                      ....-.+.+..|++.|++.|..++..|++.+..++...+.+-.+.     ++...++++.... ...-..++-+|+.|+.
T Consensus       335 v~eivE~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp~~Lad~-----vi~svid~~~p~e~~~aWHgacLaLAELA~  409 (1133)
T KOG1943|consen  335 VPEIVEFVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLPPELADQ-----VIGSVIDLFNPAEDDSAWHGACLALAELAL  409 (1133)
T ss_pred             cHHHHHHHHHHHHHhccCCcchhhHHHHHHHHHHHccCcHHHHHH-----HHHHHHHhcCcCCchhHHHHHHHHHHHHHh
Confidence            334445677888888889999999999999999999883333332     3555555554433 4555688889999987


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcC--------CChHHHHHHHHHHHHhhccCCCh--hHHHhcCChHHHHHHhccCCHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKF--------QNGTLRELAAAAILTLSAAAPNK--PAIAASGAAPLLVQILHSGSVQG  167 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~--------~~~~~~~~a~~~L~~Ls~~~~~~--~~i~~~~~l~~L~~lL~~~~~~~  167 (375)
                      ..--.-..+  ..++|.++.-|.-        ....+|..|+.++|.++..-+..  ..+...=.-..|...+.+++...
T Consensus       410 rGlLlps~l--~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~L~s~LL~~AlFDrevnc  487 (1133)
T KOG1943|consen  410 RGLLLPSLL--EDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQSLASALLIVALFDREVNC  487 (1133)
T ss_pred             cCCcchHHH--HHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHHHHHHHHHHHhcCchhhH
Confidence            422111111  2345556555521        23568999999999998653321  11222122223444566777888


Q ss_pred             HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccch-HHHHHHHHHHH-HhhCChhhhHHHhhccCcHHHHHHH-
Q 017249          168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS-KFAEKATALLE-ILSSSEEGRIAITNSDGGILTLVET-  244 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~-~~~~~a~~~L~-~l~~~~~~~~~~~~~~g~v~~Lv~l-  244 (375)
                      ++.|..++........|...     |+    .++..-+... ..+.+|-..++ .++..          .|....+++. 
T Consensus       488 RRAAsAAlqE~VGR~~n~p~-----Gi----~Lis~~dy~sV~~rsNcy~~l~~~ia~~----------~~y~~~~f~~L  548 (1133)
T KOG1943|consen  488 RRAASAALQENVGRQGNFPH-----GI----SLISTIDYFSVTNRSNCYLDLCVSIAEF----------SGYREPVFNHL  548 (1133)
T ss_pred             hHHHHHHHHHHhccCCCCCC-----ch----hhhhhcchhhhhhhhhHHHHHhHHHHhh----------hhHHHHHHHHH
Confidence            99999998876544332211     11    2222211110 11122222222 12222          2333333333 


Q ss_pred             ----hccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249          245 ----VEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  303 (375)
Q Consensus       245 ----L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L  303 (375)
                          +.+-+..+++.+.++|..|+... +    +....+.+++|+....+++...+.-...+.
T Consensus       549 ~t~Kv~HWd~~irelaa~aL~~Ls~~~-p----k~~a~~~L~~lld~~ls~~~~~r~g~~la~  606 (1133)
T KOG1943|consen  549 LTKKVCHWDVKIRELAAYALHKLSLTE-P----KYLADYVLPPLLDSTLSKDASMRHGVFLAA  606 (1133)
T ss_pred             HhcccccccHHHHHHHHHHHHHHHHhh-H----HhhcccchhhhhhhhcCCChHHhhhhHHHH
Confidence                45678999999999999987654 2    345678889999988888887776544433

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.69  E-value=0.019  Score=42.64  Aligned_cols=90  Identities=14%  Similarity=0.077  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhh
Q 017249           42 KIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELL  119 (375)
Q Consensus        42 ~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL  119 (375)
                      +.-++..|...+..- ...... .-...+++++..+.+++.++|..|+.+|.++++.   .+..+..  ...++.|.+++
T Consensus         3 R~ggli~Laa~ai~l-~~~~~~-~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~---~~~~~l~~f~~IF~~L~kl~   77 (97)
T PF12755_consen    3 RKGGLIGLAAVAIAL-GKDISK-YLDEILPPVLKCFDDQDSRVRYYACEALYNISKV---ARGEILPYFNEIFDALCKLS   77 (97)
T ss_pred             hhHHHHHHHHHHHHc-hHhHHH-HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHH
Confidence            344566666666555 222111 1125689999999999999999999999999973   3444443  67788999999


Q ss_pred             cCCChHHHHHHHHHHHHh
Q 017249          120 KFQNGTLRELAAAAILTL  137 (375)
Q Consensus       120 ~~~~~~~~~~a~~~L~~L  137 (375)
                      ...++.++..| ..|-++
T Consensus        78 ~D~d~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   78 ADPDENVRSAA-ELLDRL   94 (97)
T ss_pred             cCCchhHHHHH-HHHHHH
Confidence            99999988554 666555

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=96.68  E-value=0.044  Score=48.16  Aligned_cols=99  Identities=14%  Similarity=0.108  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhh
Q 017249           41 TKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL  119 (375)
Q Consensus        41 ~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL  119 (375)
                      ....|+..|.-++--. +..+..+.+...+..++.+|+. ..+.++..++.+|..+..+++.|...+-+.+|+..++.++
T Consensus       107 li~~aL~vLQGl~LLH-p~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~ll  185 (257)
T PF08045_consen  107 LIALALRVLQGLCLLH-PPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLL  185 (257)
T ss_pred             HHHHHHHHHHHHHHcC-chHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHH
Confidence            3556788898888877 7899999999999999999954 5789999999999999999999999999999999999999


Q ss_pred             cCC--ChHHHHHHHHHHHHhhcc
Q 017249          120 KFQ--NGTLRELAAAAILTLSAA  140 (375)
Q Consensus       120 ~~~--~~~~~~~a~~~L~~Ls~~  140 (375)
                      ++.  +.+++-.++..|.-...+
T Consensus       186 k~~~~~~~~r~K~~EFL~fyl~~  208 (257)
T PF08045_consen  186 KSKSTDRELRLKCIEFLYFYLMP  208 (257)
T ss_pred             ccccccHHHhHHHHHHHHHHHcc
Confidence            876  678888888877765543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.68  E-value=0.16  Score=50.56  Aligned_cols=107  Identities=18%  Similarity=0.103  Sum_probs=66.7

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249          151 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       151 ~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                      ..+..+..+|.+.++.++..|+.+|.+|+..+......     ...+++++...++. .++.-.+.-|..+.   .....
T Consensus       243 ~~i~~i~~lL~stssaV~fEaa~tlv~lS~~p~alk~A-----a~~~i~l~~kesdn-nvklIvldrl~~l~---~~~~~  313 (948)
T KOG1058|consen  243 RYIRCIYNLLSSTSSAVIFEAAGTLVTLSNDPTALKAA-----ASTYIDLLVKESDN-NVKLIVLDRLSELK---ALHEK  313 (948)
T ss_pred             HHHHHHHHHHhcCCchhhhhhcceEEEccCCHHHHHHH-----HHHHHHHHHhccCc-chhhhhHHHHHHHh---hhhHH
Confidence            45677777888888888888888888887665443332     23455555443221 23322333333333   22233


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  268 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  268 (375)
                      ++  .|.+-.++++|.+++-.++..++....-|+...+
T Consensus       314 il--~~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN  349 (948)
T KOG1058|consen  314 IL--QGLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN  349 (948)
T ss_pred             HH--HHHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc
Confidence            33  2677778888888888899999988888877653

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.66  E-value=0.16  Score=50.72  Aligned_cols=260  Identities=19%  Similarity=0.180  Sum_probs=146.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--  102 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--  102 (375)
                      -.++++=+++++....+..+|++.+.++.... .  +. +.  ..+..|--+++++.+-+|-.|.++|..++.-.|..  
T Consensus       245 ~~~~fl~s~l~~K~emV~~EaArai~~l~~~~-~--r~-l~--pavs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~  318 (865)
T KOG1078|consen  245 PLFPFLESCLRHKSEMVIYEAARAIVSLPNTN-S--RE-LA--PAVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVT  318 (865)
T ss_pred             hHHHHHHHHHhchhHHHHHHHHHHHhhccccC-H--hh-cc--hHHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCcccc
Confidence            34455556666778888999999999887665 1  11 11  16777778889999999999999999998654321  


Q ss_pred             ---HH---HHHH---cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHH-------------HhcCChHHHHH
Q 017249          103 ---KV---KIAT---AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAI-------------AASGAAPLLVQ  158 (375)
Q Consensus       103 ---r~---~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i-------------~~~~~l~~L~~  158 (375)
                         ++   .+-.   .-...++-.+|+.+.......-..-+.+...+  ++.+...             -+.+.++.|..
T Consensus       319 ~cN~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvdai~sLc~~fp~k~~~~m~FL~~  398 (865)
T KOG1078|consen  319 VCNLDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVDAIRSLCLKFPRKHTVMMNFLSN  398 (865)
T ss_pred             ccchhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHHHHHHHHhhccHHHHHHHHHHHH
Confidence               10   0100   01122333333333222221111112221111  1111000             12234555566


Q ss_pred             HhccC-CHHHHHHHHHHHHHhcc-CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhcc
Q 017249          159 ILHSG-SVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSD  235 (375)
Q Consensus       159 lL~~~-~~~~~~~a~~~L~~L~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~  235 (375)
                      +|+.. ..+.+.....++..+.. .++.+..     +...|...+.++.    ....+.++|.-|-.. |..   .. ..
T Consensus       399 ~Lr~eGg~e~K~aivd~Ii~iie~~pdsKe~-----~L~~LCefIEDce----~~~i~~rILhlLG~EgP~a---~~-Ps  465 (865)
T KOG1078|consen  399 MLREEGGFEFKRAIVDAIIDIIEENPDSKER-----GLEHLCEFIEDCE----FTQIAVRILHLLGKEGPKA---PN-PS  465 (865)
T ss_pred             HHHhccCchHHHHHHHHHHHHHHhCcchhhH-----HHHHHHHHHHhcc----chHHHHHHHHHHhccCCCC---CC-cc
Confidence            65543 34556666666665554 3333332     4456666666553    223355666544321 111   01 23


Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      ..+..+...+.-.+..++..|+.+|..+...+.      .....+...|.+.+.+.+..+|+.|...|..+.+.
T Consensus       466 kyir~iyNRviLEn~ivRaaAv~alaKfg~~~~------~l~~sI~vllkRc~~D~DdevRdrAtf~l~~l~~~  533 (865)
T KOG1078|consen  466 KYIRFIYNRVILENAIVRAAAVSALAKFGAQDV------VLLPSILVLLKRCLNDSDDEVRDRATFYLKNLEEK  533 (865)
T ss_pred             hhhHHHhhhhhhhhhhhHHHHHHHHHHHhcCCC------CccccHHHHHHHHhcCchHHHHHHHHHHHHHhhhh
Confidence            445555555555678889999999999985541      12344556667788899999999999999999843

>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]

Probab=96.61  E-value=0.077  Score=55.32  Aligned_cols=232  Identities=12%  Similarity=0.038  Sum_probs=143.3

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhC---ChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccCh
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKS---SLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~---~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      ..+|.++.++.++..++|..|+.+|..+...-   ++.+...|. .-.+|.|-.++.+ ....++..-+..|..|+..-.
T Consensus       462 RVlPY~v~l~~Ds~a~Vra~Al~Tlt~~L~~Vr~~~~~daniF~-eYlfP~L~~l~~d~~~~~vRiayAsnla~LA~tA~  540 (1431)
T KOG1240|consen  462 RVLPYFVHLLMDSEADVRATALETLTELLALVRDIPPSDANIFP-EYLFPHLNHLLNDSSAQIVRIAYASNLAQLAKTAY  540 (1431)
T ss_pred             hhHHHHHHHhcCchHHHHHHHHHHHHHHHhhccCCCcccchhhH-hhhhhhhHhhhccCccceehhhHHhhHHHHHHHHH
Confidence            46788999999999999999999998886432   122333222 2345666666666 334455555566666654210


Q ss_pred             hhHHH----------------------------HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCC
Q 017249          101 RNKVK----------------------------IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA  152 (375)
Q Consensus       101 ~~r~~----------------------------i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~  152 (375)
                      .....                            -...++-..++.+|..+++.++..-+..|.-|+..-.. .. ...-.
T Consensus       541 rFle~~q~~~~~g~~n~~nset~~~~~~~~~~~~L~~~V~~~v~sLlsd~~~~Vkr~Lle~i~~LC~FFGk-~k-sND~i  618 (1431)
T KOG1240|consen  541 RFLELTQELRQAGMLNDPNSETAPEQNYNTELQALHHTVEQMVSSLLSDSPPIVKRALLESIIPLCVFFGK-EK-SNDVI  618 (1431)
T ss_pred             HHHHHHHHHHhcccccCcccccccccccchHHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHhhh-cc-cccch
Confidence            00000                            00011122334445555556665555555555432100 00 01235


Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249          153 APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  232 (375)
Q Consensus       153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  232 (375)
                      +..|+..|++.+...+..-...|..++..-.  ..-++...+|.|..-|.++  .+.+...|+++|..|+...--++..+
T Consensus       619 LshLiTfLNDkDw~LR~aFfdsI~gvsi~VG--~rs~seyllPLl~Q~ltD~--EE~Viv~aL~~ls~Lik~~ll~K~~v  694 (1431)
T KOG1240|consen  619 LSHLITFLNDKDWRLRGAFFDSIVGVSIFVG--WRSVSEYLLPLLQQGLTDG--EEAVIVSALGSLSILIKLGLLRKPAV  694 (1431)
T ss_pred             HHHHHHHhcCccHHHHHHHHhhccceEEEEe--eeeHHHHHHHHHHHhccCc--chhhHHHHHHHHHHHHHhcccchHHH
Confidence            6778888888877666655555554443211  1114556778888888776  34677889999999998877777766


Q ss_pred             hccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          233 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       233 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      .  ..++....+|-+++..+|..++.+|...+.
T Consensus       695 ~--~i~~~v~PlL~hPN~WIR~~~~~iI~~~~~  725 (1431)
T KOG1240|consen  695 K--DILQDVLPLLCHPNLWIRRAVLGIIAAIAR  725 (1431)
T ss_pred             H--HHHHhhhhheeCchHHHHHHHHHHHHHHHh
Confidence            3  588888899999999999999999988754

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=96.61  E-value=0.043  Score=46.19  Aligned_cols=112  Identities=17%  Similarity=0.178  Sum_probs=81.9

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC---------CCHHHHHHHHHHHHH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS---------PNLDAIESSLLALLN   94 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~---------~~~~~~~~a~~~L~~   94 (375)
                      ......++..+.+.....  ..+..|.-.....+......|++.||+..|++.|..         .+.+....++++|..
T Consensus        65 ~~~p~~~i~~L~~~~~~~--~~L~~L~v~Lrt~~~~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clka  142 (187)
T PF06371_consen   65 KSSPEWYIKKLKSRPSTS--KILKSLRVSLRTNPISWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKA  142 (187)
T ss_dssp             CHHHHHHHHHHTTT--HH--HHHHHHHHHHHHS-HHHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHccCccH--HHHHHHHHHhccCCchHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHH
Confidence            345667788887654443  444444444555535778899999999999998842         356788999999999


Q ss_pred             hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249           95 LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLS  138 (375)
Q Consensus        95 L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  138 (375)
                      +.. +......+.. .+++..|+..|.+++..++..++.+|..++
T Consensus       143 l~n-~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~~leiL~~lc  186 (187)
T PF06371_consen  143 LMN-TKYGLEAVLSHPDSVNLIALSLDSPNIKTRKLALEILAALC  186 (187)
T ss_dssp             HTS-SHHHHHHHHCSSSHHHHHHHT--TTSHHHHHHHHHHHHHHH
T ss_pred             HHc-cHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHHHHHHHHHHH
Confidence            997 5666777776 789999999999999999999999998876

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.58  E-value=0.26  Score=41.22  Aligned_cols=93  Identities=16%  Similarity=0.104  Sum_probs=72.8

Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh
Q 017249           81 NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL  160 (375)
Q Consensus        81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL  160 (375)
                      ++.++..++.+++-|+...+..-+     ..+|.+...|.++++.+|..|+.+|..|...+-.+..   ...+..++.++
T Consensus         1 ~~~vR~n~i~~l~DL~~r~~~~ve-----~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik~k---~~l~~~~l~~l   72 (178)
T PF12717_consen    1 DPSVRNNAIIALGDLCIRYPNLVE-----PYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIKVK---GQLFSRILKLL   72 (178)
T ss_pred             CHHHHHHHHHHHHHHHHhCcHHHH-----hHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCceeeh---hhhhHHHHHHH
Confidence            467899999999999875443222     2377899999999999999999999999875432221   22347788889


Q ss_pred             ccCCHHHHHHHHHHHHHhccC
Q 017249          161 HSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       161 ~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      .++++.++..|..++..+...
T Consensus        73 ~D~~~~Ir~~A~~~~~e~~~~   93 (178)
T PF12717_consen   73 VDENPEIRSLARSFFSELLKK   93 (178)
T ss_pred             cCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999998755

>PF12717 Cnd1: non-SMC mitotic condensation complex subunit 1

Probab=96.56  E-value=0.065  Score=44.82  Aligned_cols=146  Identities=13%  Similarity=0.122  Sum_probs=93.6

Q ss_pred             hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH
Q 017249          208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL  287 (375)
Q Consensus       208 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l  287 (375)
                      +.++-++..+++-|+....+   ++  ...++.+...|.++++.+|..|+.+|..|...+--.     ++...+..++.+
T Consensus         2 ~~vR~n~i~~l~DL~~r~~~---~v--e~~~~~l~~~L~D~~~~VR~~al~~Ls~Li~~d~ik-----~k~~l~~~~l~~   71 (178)
T PF12717_consen    2 PSVRNNAIIALGDLCIRYPN---LV--EPYLPNLYKCLRDEDPLVRKTALLVLSHLILEDMIK-----VKGQLFSRILKL   71 (178)
T ss_pred             HHHHHHHHHHHHHHHHhCcH---HH--HhHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCcee-----ehhhhhHHHHHH
Confidence            35677788888877754322   22  357888999999999999999999999998765211     223344788888


Q ss_pred             hhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh---HHHHHHHHHHHHHHHHHHH-HHhHHHHHHH
Q 017249          288 TVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA---DKAAETAKRLLQDMVQRSM-ELSMTRIQQR  363 (375)
Q Consensus       288 l~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~---~~~~~~a~~~l~~l~~~s~-~~~~~~~~~~  363 (375)
                      +.+.++.++..|..++..+........+.. .++.++..|.......   +...++=..+++-|.+.-. ++....+++|
T Consensus        72 l~D~~~~Ir~~A~~~~~e~~~~~~~~~i~~-~~~e~i~~l~~~~~~~~~~~~~~~~~~~I~~fll~~i~~d~~~~~l~~k  150 (178)
T PF12717_consen   72 LVDENPEIRSLARSFFSELLKKRNPNIIYN-NFPELISSLNNCYEHPVYGPLSREKRKKIYKFLLDFIDKDKQKESLVEK  150 (178)
T ss_pred             HcCCCHHHHHHHHHHHHHHHHhccchHHHH-HHHHHHHHHhCccccccccccCHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            899999999999999999988743333433 3444555554221110   2333444455555554433 5555555444


Q ss_pred             h
Q 017249          364 A  364 (375)
Q Consensus       364 ~  364 (375)
                      .
T Consensus       151 l  151 (178)
T PF12717_consen  151 L  151 (178)
T ss_pred             H
Confidence            3

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.099  Score=52.67  Aligned_cols=216  Identities=14%  Similarity=0.106  Sum_probs=132.5

Q ss_pred             cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHH
Q 017249          120 KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLIN  199 (375)
Q Consensus       120 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~  199 (375)
                      .++-+.++-.++..|..+.........+...+++...++.|++.++.+--+|...+..||..       .....+|.+..
T Consensus       737 ~d~qvpik~~gL~~l~~l~e~r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il~dL~e  809 (982)
T KOG4653|consen  737 HDDQVPIKGYGLQMLRHLIEKRKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDILPDLSE  809 (982)
T ss_pred             cCCcccchHHHHHHHHHHHHhcchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhHHHHHH
Confidence            34455678889999999998877777778889999999999999999999999988887753       33445666666


Q ss_pred             Hhhhccc-c-hHHHHHHHHHHHHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249          200 LLKDCKK-Y-SKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI  275 (375)
Q Consensus       200 ll~~~~~-~-~~~~~~a~~~L~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l  275 (375)
                      .-.+.+. . .+.+.....++.++..  ++-..+..   +-.+...+..+++++...|..+++.++++|........+.+
T Consensus       810 ~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~---~~Li~tfl~gvrepd~~~RaSS~a~lg~Lcq~~a~~vsd~~  886 (982)
T KOG4653|consen  810 EYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK---AVLINTFLSGVREPDHEFRASSLANLGQLCQLLAFQVSDFF  886 (982)
T ss_pred             HHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH---HHHHHHHHHhcCCchHHHHHhHHHHHHHHHHHHhhhhhHHH
Confidence            4333221 1 1222223455554442  22111111   12233444445666677799999999999875421222211


Q ss_pred             HHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhh---h---hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          276 LKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEK---R---LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       276 ~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~---~---~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                        ..++..++.+.. ++++.+|+.|+.++..+-.+-.+.   +   ...+....+.....  ......++-.|+.++..+
T Consensus       887 --~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr--~~~dd~~klhaql~leei  962 (982)
T KOG4653|consen  887 --HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVR--QHDDDGLKLHAQLCLEEI  962 (982)
T ss_pred             --HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHh--cCchhHHHHHHHHHHHHH
Confidence              234444555444 678999999999999887755331   1   22334444444444  233356667777777766


Q ss_pred             H
Q 017249          349 V  349 (375)
Q Consensus       349 ~  349 (375)
                      -
T Consensus       963 ~  963 (982)
T KOG4653|consen  963 Q  963 (982)
T ss_pred             H
Confidence            4

>PF11698 V-ATPase_H_C: V-ATPase subunit H; InterPro: IPR011987 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane

Probab=96.50  E-value=0.014  Score=44.75  Aligned_cols=74  Identities=22%  Similarity=0.237  Sum_probs=62.2

Q ss_pred             hHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           23 KQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        23 ~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ....+..|+.+|. +.|+....-|+.=|+.++... |..+..+-+.|+=..+.+++.+++++++.+|+.++..+-.
T Consensus        41 ~~~llk~L~~lL~~s~d~~~laVac~Dig~~vr~~-p~gr~ii~~lg~K~~vM~Lm~h~d~eVr~eAL~avQklm~  115 (119)
T PF11698_consen   41 NFELLKKLIKLLDKSDDPTTLAVACHDIGEFVRHY-PNGRNIIEKLGAKERVMELMNHEDPEVRYEALLAVQKLMV  115 (119)
T ss_dssp             GGHHHHHHHHHH-SHHHHHHHHHHHHHHHHHHHH--GGGHHHHHHHSHHHHHHHHTS-SSHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHccCCCcceeehhhcchHHHHHHC-hhHHHHHHhcChHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence            3557899999995 667888888999999999998 8888888788999999999999999999999999988764

ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. This entry represents the C-terminal domain of subunit H (also known as Vma13p) found in the V1 complex of V-ATPases. This subunit has a regulatory function, being responsible for activating ATPase activity and coupling ATPase activity to proton flow []. The yeast enzyme contains five motifs similar to the HEAT or Armadillo repeats seen in the importins, and can be divided into two distinct domains: a large N-terminal domain consisting of stacked alpha helices, and a smaller C-terminal alpha-helical domain with a similar superhelical topology to an armadillo repeat []. More information about this protein can be found at Protein of the Month: ATP Synthases [].; GO: 0016820 hydrolase activity, acting on acid anhydrides, catalyzing transmembrane movement of substances, 0015991 ATP hydrolysis coupled proton transport, 0000221 vacuolar proton-transporting V-type ATPase, V1 domain; PDB: 1HO8_A.

>PF12755 Vac14_Fab1_bd: Vacuolar 14 Fab1-binding region

Probab=96.42  E-value=0.017  Score=42.89  Aligned_cols=92  Identities=17%  Similarity=0.194  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCC
Q 017249           85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGS  164 (375)
Q Consensus        85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~  164 (375)
                      +..++.+|...+..-+.. ..-+-...+++++..+.+++..+|..|+.+|.|++.........--...++.|.+++.+++
T Consensus         3 R~ggli~Laa~ai~l~~~-~~~~l~~Il~pVL~~~~D~d~rVRy~AcEaL~ni~k~~~~~~l~~f~~IF~~L~kl~~D~d   81 (97)
T PF12755_consen    3 RKGGLIGLAAVAIALGKD-ISKYLDEILPPVLKCFDDQDSRVRYYACEALYNISKVARGEILPYFNEIFDALCKLSADPD   81 (97)
T ss_pred             hhHHHHHHHHHHHHchHh-HHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence            456667777766543333 2223345789999999999999999999999999876443222223567888899999998


Q ss_pred             HHHHHHHHHHHHHh
Q 017249          165 VQGRVDAVTALHYL  178 (375)
Q Consensus       165 ~~~~~~a~~~L~~L  178 (375)
                      +.++..| ..|-+|
T Consensus        82 ~~Vr~~a-~~Ld~l   94 (97)
T PF12755_consen   82 ENVRSAA-ELLDRL   94 (97)
T ss_pred             hhHHHHH-HHHHHH
Confidence            8877666 455544

>KOG1248 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.39  E-value=0.77  Score=48.20  Aligned_cols=216  Identities=18%  Similarity=0.183  Sum_probs=123.7

Q ss_pred             CCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC--CCchhhhhcCCcHH
Q 017249          121 FQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP  196 (375)
Q Consensus       121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~  196 (375)
                      +.+..+|..+..+|..++..+.......  .......|.+-+++.....+...+.+|..|-...  +.+..+. . .++.
T Consensus       665 ~~~~~vQkK~yrlL~~l~~~~s~~~~~~q~i~~I~n~L~ds~qs~~~~~~~~rl~~L~~L~~~~~~e~~~~i~-k-~I~E  742 (1176)
T KOG1248|consen  665 SSSTKVQKKAYRLLEELSSSPSGEGLVEQRIDDIFNSLLDSFQSSSSPAQASRLKCLKRLLKLLSAEHCDLIP-K-LIPE  742 (1176)
T ss_pred             cccHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHhccHHHHHHHH-H-HHHH
Confidence            3378889999999999988755433322  1233445555556666677888888877776432  2222222 1 3333


Q ss_pred             HHHHhhhcccchHHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccC--ChHHHHHH--HHHHHHhcccCc
Q 017249          197 LINLLKDCKKYSKFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDG--SLVSTQHA--VGALLSLCQSCR  268 (375)
Q Consensus       197 Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a--~~~L~~l~~~~~  268 (375)
                      ++-.+...  +...++.+..+|..++.    ...+... .  ...+...+..+..+  .+..+..|  +-++..+...  
T Consensus       743 vIL~~Ke~--n~~aR~~Af~lL~~i~~i~~~~d~g~e~-~--~~~lnefl~~Isagl~gd~~~~~as~Ivai~~il~e--  815 (1176)
T KOG1248|consen  743 VILSLKEV--NVKARRNAFALLVFIGAIQSSLDDGNEP-A--SAILNEFLSIISAGLVGDSTRVVASDIVAITHILQE--  815 (1176)
T ss_pred             HHHhcccc--cHHHHhhHHHHHHHHHHHHhhhcccccc-h--HHHHHHHHHHHHhhhcccHHHHHHHHHHHHHHHHHH--
Confidence            33333433  44567788888887773    0111000 0  01333444444322  22222333  3333333322  


Q ss_pred             HHHHHHHHH----cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhh---hhhHHHHHHHHhhcCCChHHHHHHH
Q 017249          269 DKYRQLILK----EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS---SSVLEKIVYDIAARVDGADKAAETA  341 (375)
Q Consensus       269 ~~~~~~l~~----~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~---~g~~~~l~~~l~~~~~g~~~~~~~a  341 (375)
                         ...+..    .+.++.+.-++.++++++.+.|+..+..+...-+...++   ..+++.++.++   .+++...+.+.
T Consensus       816 ---~~~~ld~~~l~~li~~V~~~L~s~sreI~kaAI~fikvlv~~~pe~~l~~~~~~LL~sll~ls---~d~k~~~r~Kv  889 (1176)
T KOG1248|consen  816 ---FKNILDDETLEKLISMVCLYLASNSREIAKAAIGFIKVLVYKFPEECLSPHLEELLPSLLALS---HDHKIKVRKKV  889 (1176)
T ss_pred             ---HhccccHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHcCCHHHHhhhHHHHHHHHHHHH---HhhhHHHHHHH
Confidence               111223    344555556777899999999999999998877764443   33677666544   46777888888


Q ss_pred             HHHHHHHHHH
Q 017249          342 KRLLQDMVQR  351 (375)
Q Consensus       342 ~~~l~~l~~~  351 (375)
                      +-+++.|++.
T Consensus       890 r~LlekLirk  899 (1176)
T KOG1248|consen  890 RLLLEKLIRK  899 (1176)
T ss_pred             HHHHHHHHHH
Confidence            8899988766

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.38  E-value=0.21  Score=49.97  Aligned_cols=208  Identities=15%  Similarity=0.070  Sum_probs=140.1

Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHH-HhhccCCChhHHHhcCChHHHHHHhccCC-HHHHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL-TLSAAAPNKPAIAASGAAPLLVQILHSGS-VQGRVDAV  172 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~-~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~  172 (375)
                      ++.....-|...++.|+...|+.+.....+..+.....+|. .+.....     .....++++...++... ..-...++
T Consensus       489 ~aA~~K~~~~~~Ik~~~~~aLlrl~~~q~e~akl~~~~aL~~~i~f~~~-----~~~~v~~~~~s~~~~d~~~~en~E~L  563 (748)
T KOG4151|consen  489 LAAKEKYERAKKIKPGGYEALLRLGQQQFEEAKLKWYHALAGKIDFPGE-----RSYEVVKPLDSALHNDEKGLENFEAL  563 (748)
T ss_pred             HhhhhHHhcCccccccHHHHHHHHHHHhchHHHHHHHHHHhhhcCCCCC-----chhhhhhhhcchhhhhHHHHHHHHHH
Confidence            33335667788889999999999998888888888888887 2222111     12344555555554432 23366788


Q ss_pred             HHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc-cCcHHHHHHHhccCCh
Q 017249          173 TALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS-DGGILTLVETVEDGSL  250 (375)
Q Consensus       173 ~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~-~g~v~~Lv~lL~~~~~  250 (375)
                      .++.||++.+ ..+..+...-+++.+-..+...  ++..+..++..+.||..++......+.+ ...++.....+.....
T Consensus       564 ~altnLas~s~s~r~~i~ke~~~~~ie~~~~ee--~~~lqraa~e~~~NLl~~~~~~e~si~e~~~~l~~w~~~~e~~~E  641 (748)
T KOG4151|consen  564 EALTNLASISESDRQKILKEKALGKIEELMTEE--NPALQRAALESIINLLWSPLLYERSIVEYKDRLKLWNLNLEVADE  641 (748)
T ss_pred             HHhhcccCcchhhHHHHHHHhcchhhHHHhhcc--cHHHHHHHHHHHHHHHhhHHHHHHHhhccccCchHHHHHHHhhhh
Confidence            8999998764 5566677766666655555554  4467888999999999998876665544 3455555555655556


Q ss_pred             HHHHHHHHHHHHhcccCcHHHHH-HHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          251 VSTQHAVGALLSLCQSCRDKYRQ-LILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       251 ~~~~~a~~~L~~l~~~~~~~~~~-~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .....+++++..+..... .++. ...-..+...++.++.+.++.+|........++.+..
T Consensus       642 ~~~lA~a~a~a~I~sv~~-n~c~~~~~~~~~~e~~~~~i~~~~~~~qhrgl~~~ln~~~~~  701 (748)
T KOG4151|consen  642 KFELAGAGALAAITSVVE-NHCSRILELLEWLEILVRAIQDEDDEIQHRGLVIILNLFEAL  701 (748)
T ss_pred             HHhhhccccccchhhcch-hhhhhHHHhhcchHHHHHhhcCchhhhhhhhhhhhhhHHHHH
Confidence            666677777765555442 3333 3333678888999999999999999888666655444

>COG5231 VMA13 Vacuolar H+-ATPase V1 sector, subunit H [Energy production and conversion]

Probab=96.35  E-value=0.28  Score=44.00  Aligned_cols=226  Identities=15%  Similarity=0.106  Sum_probs=139.2

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhCChhhHHHH-HhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhHHHHHH-cC
Q 017249           35 INGDLETKIEAARDIRKVVKKSSLKTRSEF-AAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNKVKIAT-AG  110 (375)
Q Consensus        35 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~-~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r~~i~~-~g  110 (375)
                      ++-++-.+.-|+.++.++....  +.|... .+...-..+++.++..  +.++|-.++-++..++. ++.+.+.+-+ -.
T Consensus       159 Q~i~~lTrlfav~cl~~l~~~~--e~R~i~waentcs~r~~e~l~n~vg~~qlQY~SL~~iw~lTf-~~~~aqdi~K~~d  235 (432)
T COG5231         159 QLIDFLTRLFAVSCLSNLEFDV--EKRKIEWAENTCSRRFMEILQNYVGVKQLQYNSLIIIWILTF-SKECAQDIDKMDD  235 (432)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhH--HHHHHHHHHhhHHHHHHHHHHhhhhhhhhHHHHHHHHHHHhc-CHHHHHHHHHHHH
Confidence            3445556777888888888877  677655 4445566777888664  46788899999999998 5555544443 35


Q ss_pred             ChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHH---HhcCChHHHHHHhccC---CHHHHHHHH---HH------
Q 017249          111 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAI---AASGAAPLLVQILHSG---SVQGRVDAV---TA------  174 (375)
Q Consensus       111 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i---~~~~~l~~L~~lL~~~---~~~~~~~a~---~~------  174 (375)
                      .+..|+++.+.. ...+...++.++.|+..-.+ +..|   .-.|-+..-++.|...   +.+++...-   ..      
T Consensus       236 li~dli~iVk~~~keKV~Rlc~~Iv~n~~dK~p-K~~I~~~lll~~~~k~vq~L~erkysDEel~~di~~i~s~l~~~~k  314 (432)
T COG5231         236 LINDLIAIVKERAKEKVLRLCCGIVANVLDKSP-KGYIFSPLLLNDISKCVQVLLERKYSDEELVIDIERIRSRLVQNTK  314 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchhhhhHhhcchHHHHHHHHhcCCChHHHHHHHHHHHHHHHhhhh
Confidence            577778887765 56677788888999876322 2222   2233344444544322   222111110   00      


Q ss_pred             --------HHHh-----ccCC---------CCchhhhh--cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHH
Q 017249          175 --------LHYL-----STCK---------ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       175 --------L~~L-----~~~~---------~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                              +..|     +.++         .|...+.+  ...+..|.++++...++.-+..++-.+...+-..|+.+..
T Consensus       315 ~l~~fD~Y~~ELdsg~l~wSp~H~~~dFWs~N~d~l~kdny~i~k~L~~~lq~n~~nt~i~vAc~Di~~~Vr~~PE~~~v  394 (432)
T COG5231         315 KLCIFDNYLNELDSGRLEWSPYHHKKDFWSTNLDMLIKDNYEIVKVLKKYLQSNNPNTWICVACSDIFQLVRASPEINAV  394 (432)
T ss_pred             hhhHHHHHHHHHhhCcccCCCcccccCchhhhHHHHhhhhHHHHHHHHHHHhcCCCCceEeeeHhhHHHHHHhCchHHHH
Confidence                    1111     1111         12233332  2467788888887654433333333333344457888887


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      +. ..|+-..++.++.++++.++-+|+.++..+..
T Consensus       395 l~-Kyg~k~~im~L~nh~d~~VkfeAl~a~q~~i~  428 (432)
T COG5231         395 LS-KYGVKEIIMNLINHDDDDVKFEALQALQTCIS  428 (432)
T ss_pred             HH-HhhhHHHHHHHhcCCCchhhHHHHHHHHHHHh
Confidence            77 68999999999999999999999999876543

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=96.34  E-value=0.62  Score=47.58  Aligned_cols=304  Identities=13%  Similarity=0.088  Sum_probs=165.3

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249           28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIA  107 (375)
Q Consensus        28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~  107 (375)
                      ++....++....+.+..++.-...++...+..++..+.....++.+-.+..+.+..++...+.....+.--.+  +.. .
T Consensus       358 ~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~~~~i~~~~ilp~~~~lv~d~~~~vr~a~a~~~~~~~p~~~--k~~-t  434 (759)
T KOG0211|consen  358 PPVSNLLKDEEWEVRYAIAKKVQKLACYLNASCYPNIPDSSILPEVQVLVLDNALHVRSALASVITGLSPILP--KER-T  434 (759)
T ss_pred             hhHHHHhcchhhhhhHHhhcchHHHhhhcCcccccccchhhhhHHHHHHHhcccchHHHHHhccccccCccCC--cCc-C
Confidence            3334444444444444444444444433312223333344445555556666666666655555555442222  000 0


Q ss_pred             HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCch
Q 017249          108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSS  186 (375)
Q Consensus       108 ~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~  186 (375)
                      -.-..|.++..++...+.++....+.+..+-...+ ..........++.+..+-......++....+.+..++....  .
T Consensus       435 i~~llp~~~~~l~de~~~V~lnli~~ls~~~~v~~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~--~  512 (759)
T KOG0211|consen  435 ISELLPLLIGNLKDEDPIVRLNLIDKLSLLEEVNDVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLG--V  512 (759)
T ss_pred             ccccChhhhhhcchhhHHHHHhhHHHHHHHHhccCcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhh--h
Confidence            12235666667777788888887776655533322 22233345567777777666667778888888777775432  1


Q ss_pred             hhhhcCCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhc
Q 017249          187 PILDATAVPPLINLLKDC--KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       187 ~i~~~g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~  264 (375)
                      .+...    .+..++...  +....+++.|...+..++..-. .....  ...++.++.....++-..|...+.++..++
T Consensus       513 ~~~~~----~~~~l~~~~l~d~v~~Ir~~aa~~l~~l~~~~G-~~w~~--~~~i~k~L~~~~q~~y~~R~t~l~si~~la  585 (759)
T KOG0211|consen  513 EFFDE----KLAELLRTWLPDHVYSIREAAARNLPALVETFG-SEWAR--LEEIPKLLAMDLQDNYLVRMTTLFSIHELA  585 (759)
T ss_pred             HHhhH----HHHHHHHhhhhhhHHHHHHHHHHHhHHHHHHhC-cchhH--HHhhHHHHHHhcCcccchhhHHHHHHHHHH
Confidence            22221    122333221  1122566777777766664322 22211  245666666655555555666566655554


Q ss_pred             ccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHH-HHHHH
Q 017249          265 QSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAA-ETAKR  343 (375)
Q Consensus       265 ~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~-~~a~~  343 (375)
                      .-.    -+.+.....+|.+..+..+..+.+|-+++..|..+...-.......-+.+.+ ..|....+.+-+-+ ..|..
T Consensus       586 ~v~----g~ei~~~~Llp~~~~l~~D~vanVR~nvak~L~~i~~~L~~~~~~~~v~pll-~~L~~d~~~dvr~~a~~a~~  660 (759)
T KOG0211|consen  586 EVL----GQEITCEDLLPVFLDLVKDPVANVRINVAKHLPKILKLLDESVRDEEVLPLL-ETLSSDQELDVRYRAILAFG  660 (759)
T ss_pred             HHh----ccHHHHHHHhHHHHHhccCCchhhhhhHHHHHHHHHhhcchHHHHHHHHHHH-HHhccCcccchhHHHHHHHH
Confidence            332    2235667789999999999999999999999988876554444444455544 45665555544443 55555


Q ss_pred             HHHHH
Q 017249          344 LLQDM  348 (375)
Q Consensus       344 ~l~~l  348 (375)
                      .+...
T Consensus       661 ~i~l~  665 (759)
T KOG0211|consen  661 SIELS  665 (759)
T ss_pred             HHHHH
Confidence            55444

>PF04063 DUF383: Domain of unknown function (DUF383); InterPro: IPR007205 This is a protein of unknown function

Probab=96.28  E-value=0.021  Score=48.17  Aligned_cols=123  Identities=15%  Similarity=0.113  Sum_probs=85.5

Q ss_pred             CCCHHHHHHHHHHHHHhhccChhhHHHHHH----------------cCChHHHHHhhcC------CChHHHHHHHHHHHH
Q 017249           79 SPNLDAIESSLLALLNLAVRNERNKVKIAT----------------AGAIPPLVELLKF------QNGTLRELAAAAILT  136 (375)
Q Consensus        79 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----------------~g~i~~Lv~lL~~------~~~~~~~~a~~~L~~  136 (375)
                      .+.......++..|.|+++. +.....+..                ...+..|+..+..      +...-..+.+.++.|
T Consensus         6 ~~~~~~adl~~MLLsNlT~~-~~~~~~ll~~~~~~~~~~~~~~~~~~~~l~~Ll~~F~~g~~~~~n~~~~~~yla~vl~N   84 (192)
T PF04063_consen    6 DPKSPLADLACMLLSNLTRS-DSGCEKLLQLKRESSSQAPKEVSLSGFYLDKLLDLFVKGADPSYNKKDNYDYLASVLAN   84 (192)
T ss_pred             CCCcchHHHHHHHHHHhccc-hHHHHHHHhcccccccccccccchhHHHHHHHHHHHHcCCcccCCCCcchhHHHHHHHH
Confidence            34445667788889999984 444443332                1246677777654      234446688899999


Q ss_pred             hhccCCChhHHHhc--CC--hHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhc---CCcHHHHHHhh
Q 017249          137 LSAAAPNKPAIAAS--GA--APLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA---TAVPPLINLLK  202 (375)
Q Consensus       137 Ls~~~~~~~~i~~~--~~--l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~---g~i~~Lv~ll~  202 (375)
                      ++..+++|..+...  +.  +..|+..+.+.+..-+..++.+|.|+|...+....+...   +++|.|+--+.
T Consensus        85 lS~~~~gR~~~l~~~~~~~~l~kLl~ft~~~s~iRR~Gva~~IrNccFd~~~H~~LL~~~~~~iLp~LLlPLa  157 (192)
T PF04063_consen   85 LSQLPEGRQFFLDPQRYDGPLQKLLPFTEHKSVIRRGGVAGTIRNCCFDTDSHEWLLSDDEVDILPYLLLPLA  157 (192)
T ss_pred             hcCCHHHHHHHhCchhhhhHHHHHHHHhccCcHHHHHHHHHHHHHhhccHhHHHHhcCchhhhhHHHHHhhcc
Confidence            99999999988743  44  677888888887777899999999999887776766653   44444444443

It is found N-terminal to another domain of unknown function (IPR007206 from INTERPRO).

>KOG1058 consensus Vesicle coat complex COPI, beta subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.27  E-value=0.53  Score=47.04  Aligned_cols=137  Identities=12%  Similarity=0.110  Sum_probs=78.8

Q ss_pred             CChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh-----c----ccchHHHHHHHHHHHHh
Q 017249          151 GAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-----C----KKYSKFAEKATALLEIL  221 (375)
Q Consensus       151 ~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-----~----~~~~~~~~~a~~~L~~l  221 (375)
                      |.+--++.+|.+++.+++..++.....|....+          +..++.+|..     .    .+....+......+...
T Consensus       317 ~l~mDvLrvLss~dldvr~Ktldi~ldLvssrN----------vediv~~Lkke~~kT~~~e~d~~~~yRqlLiktih~c  386 (948)
T KOG1058|consen  317 GLIMDVLRVLSSPDLDVRSKTLDIALDLVSSRN----------VEDIVQFLKKEVMKTHNEESDDNGKYRQLLIKTIHAC  386 (948)
T ss_pred             HHHHHHHHHcCcccccHHHHHHHHHHhhhhhcc----------HHHHHHHHHHHHHhccccccccchHHHHHHHHHHHHH
Confidence            344455667788888888888888777765422          2222222221     1    11234556666777666


Q ss_pred             hC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHH
Q 017249          222 SS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERA  299 (375)
Q Consensus       222 ~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A  299 (375)
                      +. .++.      .+..|+.|+.++.+.++......+..+......- |..     +...++.|++.+. -.+..+-+.|
T Consensus       387 av~Fp~~------aatvV~~ll~fisD~N~~aas~vl~FvrE~iek~-p~L-----r~~ii~~l~~~~~~irS~ki~rga  454 (948)
T KOG1058|consen  387 AVKFPEV------AATVVSLLLDFISDSNEAAASDVLMFVREAIEKF-PNL-----RASIIEKLLETFPQIRSSKICRGA  454 (948)
T ss_pred             hhcChHH------HHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHhC-chH-----HHHHHHHHHHhhhhhcccccchhH
Confidence            64 3432      2457889999999888766555555555544333 232     2344555665443 3556666777


Q ss_pred             HHHHHHhhcC
Q 017249          300 RTLLDLLRDT  309 (375)
Q Consensus       300 ~~~L~~l~~~  309 (375)
                      .|++.--+..
T Consensus       455 lwi~GeYce~  464 (948)
T KOG1058|consen  455 LWILGEYCEG  464 (948)
T ss_pred             HHHHHHHHhh
Confidence            7777655543

>KOG1943 consensus Beta-tubulin folding cofactor D [Posttranslational modification, protein turnover, chaperones]

Probab=96.26  E-value=0.37  Score=49.92  Aligned_cols=238  Identities=19%  Similarity=0.159  Sum_probs=132.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      ++++.|++.|++.+..+++.|++.++.++...|  +..  ...++...++++.-. ++..-..++-+|..|+...=-...
T Consensus       341 ~vie~Lls~l~d~dt~VrWSaAKg~grvt~rlp--~~L--ad~vi~svid~~~p~e~~~aWHgacLaLAELA~rGlLlps  416 (1133)
T KOG1943|consen  341 FVIEHLLSALSDTDTVVRWSAAKGLGRVTSRLP--PEL--ADQVIGSVIDLFNPAEDDSAWHGACLALAELALRGLLLPS  416 (1133)
T ss_pred             HHHHHHHHhccCCcchhhHHHHHHHHHHHccCc--HHH--HHHHHHHHHHhcCcCCchhHHHHHHHHHHHHHhcCCcchH
Confidence            568888899999999999999999999998766  221  122455666655433 355666888889998764322111


Q ss_pred             HHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCC--CCchhhhhcCCcHH-HHHHhhhcccchHHHHHHH
Q 017249          147 IAASGAAPLLVQILHSG--------SVQGRVDAVTALHYLSTCK--ENSSPILDATAVPP-LINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~--------~~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~-Lv~ll~~~~~~~~~~~~a~  215 (375)
                      . -..++|.+++-|.-.        ...++..||-++|.++...  .....++.. ..+. |...+-+.  .-..+.+|.
T Consensus       417 ~-l~dVvplI~kaL~Yd~~~G~~s~G~~VRDaAcY~~WAf~Rays~~~l~p~l~~-L~s~LL~~AlFDr--evncRRAAs  492 (1133)
T KOG1943|consen  417 L-LEDVVPLILKALHYDVRRGQHSVGQHVRDAACYVCWAFARAYSPSDLKPVLQS-LASALLIVALFDR--EVNCRRAAS  492 (1133)
T ss_pred             H-HHHHHHHHHHHhhhhhhhcccccccchHHHHHHHHHHHHhcCChhhhhHHHHH-HHHHHHHHHhcCc--hhhHhHHHH
Confidence            1 124456666655322        2467889999999988542  222222221 1122 22222222  335677777


Q ss_pred             HHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH-hhhCCHH
Q 017249          216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL-TVEGTFE  294 (375)
Q Consensus       216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l-l~~~~~~  294 (375)
                      +++........+.      ..++ .|+...+.-+-..+.++-..++.-...- +..+.     -++.+|+.. +.+=++.
T Consensus       493 AAlqE~VGR~~n~------p~Gi-~Lis~~dy~sV~~rsNcy~~l~~~ia~~-~~y~~-----~~f~~L~t~Kv~HWd~~  559 (1133)
T KOG1943|consen  493 AALQENVGRQGNF------PHGI-SLISTIDYFSVTNRSNCYLDLCVSIAEF-SGYRE-----PVFNHLLTKKVCHWDVK  559 (1133)
T ss_pred             HHHHHHhccCCCC------CCch-hhhhhcchhhhhhhhhHHHHHhHHHHhh-hhHHH-----HHHHHHHhcccccccHH
Confidence            7777544321111      1111 1222222222333334333333222111 12222     233344442 4456899


Q ss_pred             HHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249          295 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI  327 (375)
Q Consensus       295 ~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l  327 (375)
                      +|+.|+++|..|+...+ +....+++++++...
T Consensus       560 irelaa~aL~~Ls~~~p-k~~a~~~L~~lld~~  591 (1133)
T KOG1943|consen  560 IRELAAYALHKLSLTEP-KYLADYVLPPLLDST  591 (1133)
T ss_pred             HHHHHHHHHHHHHHhhH-Hhhcccchhhhhhhh
Confidence            99999999999887665 455566777777654

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=96.12  E-value=0.26  Score=44.97  Aligned_cols=170  Identities=15%  Similarity=0.143  Sum_probs=107.9

Q ss_pred             CChHHHH-HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--Ch
Q 017249           68 GVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NK  144 (375)
Q Consensus        68 g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~  144 (375)
                      +.+..|+ ..+.++++.+|+.|+++|+-.+--+.+....     .++.+...+..+++.++..|+.++..+...-.  ..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld~~~a~~-----~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~~  100 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLDKELAKE-----HLPLFLQALQKDDEEVKITALKALFDLLLTHGIDIF  100 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhChHHHHH-----HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchhc
Confidence            4455554 6778899999999999999988754422222     26678888877799999999999998764322  11


Q ss_pred             hH-------HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcc-c-chHHHHHHH
Q 017249          145 PA-------IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK-K-YSKFAEKAT  215 (375)
Q Consensus       145 ~~-------i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~-~-~~~~~~~a~  215 (375)
                      ..       ......++.+.+.+.+.+++++..++..++.|--......   ...++..|+-+.-++. . ...++..-.
T Consensus       101 ~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i~~---~~~vL~~Lll~yF~p~t~~~~~LrQ~L~  177 (298)
T PF12719_consen  101 DSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRISD---PPKVLSRLLLLYFNPSTEDNQRLRQCLS  177 (298)
T ss_pred             cchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCCc---HHHHHHHHHHHHcCcccCCcHHHHHHHH
Confidence            11       1234577788889999999999999999999875433222   1233444444433322 1 224443233


Q ss_pred             HHHHHhhCCh-hhhHHHhhccCcHHHHHHHhcc
Q 017249          216 ALLEILSSSE-EGRIAITNSDGGILTLVETVED  247 (375)
Q Consensus       216 ~~L~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~  247 (375)
                      ..+-..+... .++..+.  ..+++.+-.+...
T Consensus       178 ~Ffp~y~~s~~~~Q~~l~--~~f~~~l~~~~~~  208 (298)
T PF12719_consen  178 VFFPVYASSSPENQERLA--EAFLPTLRTLSNA  208 (298)
T ss_pred             HHHHHHHcCCHHHHHHHH--HHHHHHHHHHHhC
Confidence            3344666554 4554444  4677777776654

>KOG1078 consensus Vesicle coat complex COPI, gamma subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.08  E-value=1.9  Score=43.53  Aligned_cols=260  Identities=17%  Similarity=0.139  Sum_probs=129.1

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH---
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA---  146 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~---  146 (375)
                      .+.+=.+|++.+.-+.-.|++++.++..-+.  |..--   .+..|-.++.++...+|..|..+|..++...+.+..   
T Consensus       247 ~~fl~s~l~~K~emV~~EaArai~~l~~~~~--r~l~p---avs~Lq~flssp~~~lRfaAvRtLnkvAm~~P~~v~~cN  321 (865)
T KOG1078|consen  247 FPFLESCLRHKSEMVIYEAARAIVSLPNTNS--RELAP---AVSVLQLFLSSPKVALRFAAVRTLNKVAMKHPQAVTVCN  321 (865)
T ss_pred             HHHHHHHHhchhHHHHHHHHHHHhhccccCH--hhcch---HHHHHHHHhcCcHHHHHHHHHHHHHHHHHhCCccccccc
Confidence            4445556677788889999999999886432  22111   677888888999999999999999999865443211   


Q ss_pred             ------HHhc---CChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249          147 ------IAAS---GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       147 ------i~~~---~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                            +.+.   -.-.++..+|+.++.........-+.+...+  ++.+..+++  .+..|.......      ...-.
T Consensus       322 ~elE~lItd~NrsIat~AITtLLKTG~e~sv~rLm~qI~~fv~disDeFKivvvd--ai~sLc~~fp~k------~~~~m  393 (865)
T KOG1078|consen  322 LDLESLITDSNRSIATLAITTLLKTGTESSVDRLMKQISSFVSDISDEFKIVVVD--AIRSLCLKFPRK------HTVMM  393 (865)
T ss_pred             hhHHhhhcccccchhHHHHHHHHHhcchhHHHHHHHHHHHHHHhccccceEEeHH--HHHHHHhhccHH------HHHHH
Confidence                  1111   0122344444444433222222222222211  122211111  122221111100      01111


Q ss_pred             HHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH-H----HHHHHHHcC--------ChH
Q 017249          216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD-K----YRQLILKEG--------AIP  282 (375)
Q Consensus       216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~-~----~~~~l~~~g--------~v~  282 (375)
                      ..|.++-..+.+-...   ...|+.++..+.. ++..++.++.-|+.+..++.- +    .-..+..+|        -+.
T Consensus       394 ~FL~~~Lr~eGg~e~K---~aivd~Ii~iie~-~pdsKe~~L~~LCefIEDce~~~i~~rILhlLG~EgP~a~~Pskyir  469 (865)
T KOG1078|consen  394 NFLSNMLREEGGFEFK---RAIVDAIIDIIEE-NPDSKERGLEHLCEFIEDCEFTQIAVRILHLLGKEGPKAPNPSKYIR  469 (865)
T ss_pred             HHHHHHHHhccCchHH---HHHHHHHHHHHHh-CcchhhHHHHHHHHHHHhccchHHHHHHHHHHhccCCCCCCcchhhH
Confidence            2222222111111000   0123344444432 344555666666555443310 0    011112222        344


Q ss_pred             HHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          283 GLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       283 ~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      .....+.-.+..+|-.|+.+|..+.-..  +.....+...+-+.+   .|.+...++.|.-.|+.+.++
T Consensus       470 ~iyNRviLEn~ivRaaAv~alaKfg~~~--~~l~~sI~vllkRc~---~D~DdevRdrAtf~l~~l~~~  533 (865)
T KOG1078|consen  470 FIYNRVILENAIVRAAAVSALAKFGAQD--VVLLPSILVLLKRCL---NDSDDEVRDRATFYLKNLEEK  533 (865)
T ss_pred             HHhhhhhhhhhhhHHHHHHHHHHHhcCC--CCccccHHHHHHHHh---cCchHHHHHHHHHHHHHhhhh
Confidence            4455555577889999999999998222  223333444343333   466689999999999999843

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=96.08  E-value=0.05  Score=55.06  Aligned_cols=185  Identities=18%  Similarity=0.176  Sum_probs=123.0

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH--------HHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV--------KIAT----AGAIPPLVELLKFQNGTLRELAAAAILTL  137 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~--------~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  137 (375)
                      -..|+.+|+.+  ++-..+..++.-+..|++..+.        .+++    ...+|.|++.........+..=+.+|.++
T Consensus       817 a~klld~Ls~~--~~g~~aa~~fsiim~D~~~~~~r~~~a~~riLykQRfF~~ivP~l~~~~~t~~~~~K~~yl~~LshV  894 (1030)
T KOG1967|consen  817 AEKLLDLLSGP--STGSPAAKLFSIIMSDSNPLLKRKGHAEPRILYKQRFFCDIVPILVSKFETAPGSQKHNYLEALSHV  894 (1030)
T ss_pred             HHHHHHhcCCc--cccchHHHhhHhhhccChHHhhhccccchhHHHHHHHHHhhHHHHHHHhccCCccchhHHHHHHHHH
Confidence            44566777664  3344455555555554433221        2222    45688888888755556666667777777


Q ss_pred             hccCCChhHHH--hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccc-hHHHHH
Q 017249          138 SAAAPNKPAIA--ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKY-SKFAEK  213 (375)
Q Consensus       138 s~~~~~~~~i~--~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~-~~~~~~  213 (375)
                      ..+-+. +.+.  -...+|.|++.|.-++..++.++..++.-+.... .-...-+ ...+|.++.+=.+.+.. ..+++.
T Consensus       895 l~~vP~-~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~~~l~~~~tL~t~~~-~Tlvp~lLsls~~~~n~~~~VR~~  972 (1030)
T KOG1967|consen  895 LTNVPK-QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIPMLLTESETLQTEHL-STLVPYLLSLSSDNDNNMMVVRED  972 (1030)
T ss_pred             HhcCCH-HhhccchhhHHHHHHHhcCCCccchhhhHhhhhhHHHHhccccchHHH-hHHHHHHHhcCCCCCcchhHHHHH
Confidence            665443 3332  3467889999999999999999999998776432 2222222 34777777776655432 568899


Q ss_pred             HHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          214 ATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       214 a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      |+.+|..|.. .|..+-.-. ....+..|+..|+++...+|+.|+.+
T Consensus       973 ALqcL~aL~~~~P~~~l~~f-r~~Vl~al~k~LdDkKRlVR~eAv~t 1018 (1030)
T KOG1967|consen  973 ALQCLNALTRRLPTKSLLSF-RPLVLRALIKILDDKKRLVRKEAVDT 1018 (1030)
T ss_pred             HHHHHHHHhccCCCcccccc-cHHHHHHhhhccCcHHHHHHHHHHHH
Confidence            9999999987 555554444 35788899999999988999998765

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=96.03  E-value=0.54  Score=44.13  Aligned_cols=249  Identities=17%  Similarity=0.161  Sum_probs=131.9

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChh
Q 017249           24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .+.+..++.-|. +.....|..++..|..-+.+.  +.+..+..+|.++.+++.+... +..+.-.+..++..+...+..
T Consensus        20 ~Dev~ylld~l~~~~~~s~Rr~sll~La~K~~~~--~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~   97 (361)
T PF07814_consen   20 ADEVEYLLDGLESSSSSSVRRSSLLELASKCADP--QFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGL   97 (361)
T ss_pred             HHHHHHHHhhcccCCCccHHHHHHHHHHHHhCCH--HHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCc
Confidence            456778888887 345567888888888888776  8999999999999999999543 332444343344443332444


Q ss_pred             hHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc---------cCCHHHHHHH
Q 017249          102 NKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH---------SGSVQGRVDA  171 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~---------~~~~~~~~~a  171 (375)
                      +-..+...+....++.++... ........-      .....+-.. .....+..+.+.+.         ......+.-|
T Consensus        98 ~~~l~~~~~~~~ll~~Ll~~~~~~~~~~~~~------~~~~~~lsk-~~~~~~~~~~~~~~~~~~~~~~~~~~lsp~~la  170 (361)
T PF07814_consen   98 NMHLLLDRDSLRLLLKLLKVDKSLDVPSDSD------SSRKKNLSK-VQQKSRSLCKELLSSGSSWKSPKPPELSPQTLA  170 (361)
T ss_pred             chhhhhchhHHHHHHHHhccccccccccchh------hhhhhhhhH-HHHHHHHHHHHHHhccccccccCCcccccccHH
Confidence            444444555666667777611 000000000      000000000 00111111112210         1112223344


Q ss_pred             HHHHHHhc--------------cC-CCCchhhhhcCCcHHHHHHhhh----cc----------cchHHHHHHHHHHHHhh
Q 017249          172 VTALHYLS--------------TC-KENSSPILDATAVPPLINLLKD----CK----------KYSKFAEKATALLEILS  222 (375)
Q Consensus       172 ~~~L~~L~--------------~~-~~~~~~i~~~g~i~~Lv~ll~~----~~----------~~~~~~~~a~~~L~~l~  222 (375)
                      +.++-.++              .. +.-+..+.+.|++..++.++.+    ..          ........++++|.+.+
T Consensus       171 ll~le~l~~~~~~~~~~~~t~~~~~~~fkeelr~lg~Ld~iv~~l~~~~~~~~~~~~~~~~~~~~l~~l~~cl~ILEs~T  250 (361)
T PF07814_consen  171 LLALESLVRSLREAGDLSETSSRAGEWFKEELRELGGLDHIVDILKDCHSSLSSADAWDDPSLQSLIDLERCLSILESVT  250 (361)
T ss_pred             HHHHHHHHHHHhhcccchhhhhhccccchhhhhhHHHHHHHHHHHHHhhhhhhhhhhccccchHHHHHHHHHHHHHHHHH
Confidence            44444442              00 1224555667889999998862    10          01124466888888887


Q ss_pred             C-ChhhhHHHhhccC-cHHHHH-HHhc---cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChH
Q 017249          223 S-SEEGRIAITNSDG-GILTLV-ETVE---DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP  282 (375)
Q Consensus       223 ~-~~~~~~~~~~~~g-~v~~Lv-~lL~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~  282 (375)
                      . +.+++..++...+ ....+. .++.   .........+++++.|++.++ +..+..+...++..
T Consensus       251 ~~~~~nq~~l~~~~~~~l~~~~~~l~~~~~~~~~~~l~~~lrlllNlTn~n-~~~c~~~~s~~l~~  315 (361)
T PF07814_consen  251 FLSEENQSYLLSHRSSLLPQLLSTLLRQCDDQVIQLLLLALRLLLNLTNNN-PSACEEFASPKLGQ  315 (361)
T ss_pred             hcCccchHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHeeeCCCCC-ccchHhhhhhHhcc
Confidence            5 4666666664333 232222 2222   223444678999999999887 45566666554433

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF05004 IFRD: Interferon-related developmental regulator (IFRD); InterPro: IPR007701 Interferon-related developmental regulator (IFRD1) is the human homologue of the Rattus norvegicus early response protein PC4 and its murine homologue TIS7 []

Probab=95.99  E-value=0.47  Score=43.44  Aligned_cols=193  Identities=17%  Similarity=0.164  Sum_probs=110.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc--C-CCh
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAA--A-PNK  144 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~-~~~  144 (375)
                      +...+..+.......|+.++..+.++..... ....+.+  ...+..+.+.++.+..+-+..|+.++.-++..  . ...
T Consensus        45 L~~~Id~l~eK~~~~Re~aL~~l~~~l~~~~-~~d~v~~~~~tL~~~~~k~lkkg~~~E~~lA~~~l~Ll~ltlg~g~~~  123 (309)
T PF05004_consen   45 LKEAIDLLTEKSSSTREAALEALIRALSSRY-LPDFVEDRRETLLDALLKSLKKGKSEEQALAARALALLALTLGAGEDS  123 (309)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHhcc-cHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhhhcCCCccH
Confidence            4445566666678889999999988876332 2233322  34577888888888766677787877777665  1 222


Q ss_pred             hHHHhcCChHHHHHHhccCC--HHHHHHHHHHHHHhccC-CCCchhhhh-cCCcHHHHH--Hhhhcc--------cchHH
Q 017249          145 PAIAASGAAPLLVQILHSGS--VQGRVDAVTALHYLSTC-KENSSPILD-ATAVPPLIN--LLKDCK--------KYSKF  210 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L~~~-~~~~~~i~~-~g~i~~Lv~--ll~~~~--------~~~~~  210 (375)
                      ..+ -....|.|...+.+.+  +.++..++.+|.-++.. ......+.. ...+..+..  ....+.        +.+.+
T Consensus       124 ~ei-~~~~~~~L~~~l~d~s~~~~~R~~~~~aLai~~fv~~~d~~~~~~~~~~le~if~~~~~~~~~~~~~~~~~~~~~l  202 (309)
T PF05004_consen  124 EEI-FEELKPVLKRILTDSSASPKARAACLEALAICTFVGGSDEEETEELMESLESIFLLSILKSDGNAPVVAAEDDAAL  202 (309)
T ss_pred             HHH-HHHHHHHHHHHHhCCccchHHHHHHHHHHHHHHHhhcCChhHHHHHHHHHHHHHHHHhcCcCCCcccccCCCccHH
Confidence            222 2356788888887764  45556666666655432 111111110 012221111  111111        12345


Q ss_pred             HHHHHHHHHHhhC-Chhh-hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249          211 AEKATALLEILSS-SEEG-RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       211 ~~~a~~~L~~l~~-~~~~-~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  266 (375)
                      .-+|+..-+-|.. .+.. .....  ...++.|..+|.+.+..+|..|-.+|+-|...
T Consensus       203 ~~aAL~aW~lLlt~~~~~~~~~~~--~~~~~~l~~lL~s~d~~VRiAAGEaiAll~E~  258 (309)
T PF05004_consen  203 VAAALSAWALLLTTLPDSKLEDLL--EEALPALSELLDSDDVDVRIAAGEAIALLYEL  258 (309)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHH--HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHH
Confidence            5555544443332 2332 22333  35799999999999999999998888777543

The exact function of IFRD1 is unknown but it has been shown that PC4 is necessary for muscle differentiation and that it might have a role in signal transduction. This entry also contains IFRD2 and its murine equivalent SKMc15, which are highly expressed soon after gastrulation and in the hepatic primordium, suggesting an involvement in early hematopoiesis [].

>PF13764 E3_UbLigase_R4: E3 ubiquitin-protein ligase UBR4

Probab=95.96  E-value=1.8  Score=44.74  Aligned_cols=219  Identities=12%  Similarity=0.132  Sum_probs=127.4

Q ss_pred             HHHcCChHHHHHhhcCC-----ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cCC----HHHHHHHH
Q 017249          106 IATAGAIPPLVELLKFQ-----NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGS----VQGRVDAV  172 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~-----~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~~----~~~~~~a~  172 (375)
                      +.+.||+..+++++.+.     ........+..|...+....|+..+...++++.|++.+.    .++    ..+.+..+
T Consensus       113 ~~~~gGL~~ll~~l~~~~~~~~~~~ll~~llkLL~~c~Kv~~NR~~Ll~~~al~~LL~~L~~~l~~~~~~~~~~i~E~LL  192 (802)
T PF13764_consen  113 LAECGGLEVLLSRLDSIRDFSRGRELLQVLLKLLRYCCKVKVNRRALLELNALNRLLSVLNRALQANQNSSQAEIAEQLL  192 (802)
T ss_pred             hhcCCCHHHHHHHHHhhccccCcHHHHHHHHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHhCccccccchHHHHHH
Confidence            44678999999999763     345666777777778888889999999999999998874    333    56666666


Q ss_pred             HHHHHhccCCC---Cc--hhhhhc--------CCcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccCc
Q 017249          173 TALHYLSTCKE---NS--SPILDA--------TAVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDGG  237 (375)
Q Consensus       173 ~~L~~L~~~~~---~~--~~i~~~--------g~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~  237 (375)
                      .++-.|.....   ..  ......        ..+..+++.+.+..  ....+.....++|-.|+.........+.  ..
T Consensus       193 ~IiE~ll~ea~~~~~~~~~~~~~~~~~~~~~~~~v~~lL~~l~s~~~r~~~~i~~~l~RiLP~Lt~G~~e~m~~Lv--~~  270 (802)
T PF13764_consen  193 EIIESLLSEANSSSSSESKSSSSLSGSEEQDKEQVEMLLERLNSPFVRSNPQILQALARILPFLTYGNEEKMDALV--EH  270 (802)
T ss_pred             HHHHHHHHHHhhhhhhhccccccccccccccHHHHHHHHHHhcCccccCCHHHHHHHHHHhhHHhcCCHHHHHHHH--HH
Confidence            66665543211   10  010111        12555555555431  2456778889999999987665554442  23


Q ss_pred             HHHHHHHh--ccCChHHHHHHHHHHHHhcccC-----cHHHHHHHHHcCChHHHHHHhhhCCHH--------HH------
Q 017249          238 ILTLVETV--EDGSLVSTQHAVGALLSLCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTFE--------AQ------  296 (375)
Q Consensus       238 v~~Lv~lL--~~~~~~~~~~a~~~L~~l~~~~-----~~~~~~~l~~~g~v~~L~~ll~~~~~~--------~~------  296 (375)
                      +...+.+=  +.....--..-+.+++.++.+-     ....++.+++.|++...+.++...-|.        -+      
T Consensus       271 F~p~l~f~~~D~~~~~~~~~~Le~F~~i~~~I~~~~~G~~LK~~Il~~GIv~~a~~YL~~~~P~~~~~~s~eWk~~l~~p  350 (802)
T PF13764_consen  271 FKPYLDFDKFDEEHSPDEQFKLECFCEIAEGIPNNSNGNRLKDKILESGIVQDAIDYLLKHFPSLKNTDSPEWKEFLSRP  350 (802)
T ss_pred             HHHhcChhhcccccCchHHHHHHHHHHHHhcCCCCCchHHHHHHHHHhhHHHHHHHHHHHhCcccccCCCHHHHHHhcCC
Confidence            33333321  1111000122344444444321     147889999999999999887754332        22      


Q ss_pred             --HHHHHHHHHhhcCC--hhhhhhhhhHHHHHHHH
Q 017249          297 --ERARTLLDLLRDTP--QEKRLSSSVLEKIVYDI  327 (375)
Q Consensus       297 --~~A~~~L~~l~~~~--~~~~~~~g~~~~l~~~l  327 (375)
                        ..+..+|+=|+...  .+..+..++++ ++-.|
T Consensus       351 sLp~iL~lL~GLa~gh~~tQ~~~~~~~l~-~lH~L  384 (802)
T PF13764_consen  351 SLPYILRLLRGLARGHEPTQLLIAEQLLP-LLHRL  384 (802)
T ss_pred             cHHHHHHHHHHHHhcCHHHHHHHHhhHHH-HHHHh
Confidence              23455555555444  23455566664 33444

>KOG0211 consensus Protein phosphatase 2A regulatory subunit A and related proteins [Signal transduction mechanisms]

Probab=95.83  E-value=2  Score=44.02  Aligned_cols=305  Identities=13%  Similarity=0.102  Sum_probs=180.4

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      .+..-++.+...+.++..++.-+.+++..- +.   .....+.++.+.++..+....++..|...+.++..--.  ...=
T Consensus       239 r~~~~~lc~d~~~~Vr~~~a~~l~~~a~~~-~~---~~~~s~v~~~~~~L~~DdqdsVr~~a~~~~~~l~~l~~--~~~d  312 (759)
T KOG0211|consen  239 RPIVQSLCQDDTPMVRRAVASNLGNIAKVL-ES---EIVKSEVLPTLIQLLRDDQDSVREAAVESLVSLLDLLD--DDDD  312 (759)
T ss_pred             HHHHHhhccccchhhHHHHHhhhHHHHHHH-HH---HHHHhhccHHHhhhhhcchhhHHHHHHHHHHHHHHhcC--Cchh
Confidence            333334445667777877777777777665 22   55667888899999988888888888888877764211  1102


Q ss_pred             HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCC
Q 017249          107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KEN  184 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~  184 (375)
                      ....+.+.+++..+.++..++.......+.|...-..  .......+++...+++....+.+...+.-...++..  .+.
T Consensus       313 ~~~~~~~~l~~~~~d~~~~v~~~~~~~~~~L~~~~~~--~~~~~~~~~~~~~l~~~~~~e~r~a~a~~~~~l~~~l~~~~  390 (759)
T KOG0211|consen  313 VVKSLTESLVQAVEDGSWRVSYMVADKFSELSSAVGP--SATRTQLVPPVSNLLKDEEWEVRYAIAKKVQKLACYLNASC  390 (759)
T ss_pred             hhhhhhHHHHHHhcChhHHHHHHHhhhhhhHHHHhcc--ccCcccchhhHHHHhcchhhhhhHHhhcchHHHhhhcCccc
Confidence            2244577888888888888888887777777654222  223345577888888887777666666666555533  233


Q ss_pred             chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          185 SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                      ...+.....+|.+-.++.+...  .++......+.++.. .+  ....+  ....+.++..+++..+.++..-.+.+..+
T Consensus       391 ~~~i~~~~ilp~~~~lv~d~~~--~vr~a~a~~~~~~~p~~~--k~~ti--~~llp~~~~~l~de~~~V~lnli~~ls~~  464 (759)
T KOG0211|consen  391 YPNIPDSSILPEVQVLVLDNAL--HVRSALASVITGLSPILP--KERTI--SELLPLLIGNLKDEDPIVRLNLIDKLSLL  464 (759)
T ss_pred             ccccchhhhhHHHHHHHhcccc--hHHHHHhccccccCccCC--cCcCc--cccChhhhhhcchhhHHHHHhhHHHHHHH
Confidence            4444445556777666666533  333333333333322 12  11111  34556667777777788888877766444


Q ss_pred             cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                      -... +...........+|.+..+..+...+++.+..+-+..++...-..++..-..+-+...+   .|-....++.|..
T Consensus       465 ~~v~-~v~g~~~~s~slLp~i~el~~d~~wRvr~ail~~ip~la~q~~~~~~~~~~~~l~~~~l---~d~v~~Ir~~aa~  540 (759)
T KOG0211|consen  465 EEVN-DVIGISTVSNSLLPAIVELAEDLLWRVRLAILEYIPQLALQLGVEFFDEKLAELLRTWL---PDHVYSIREAAAR  540 (759)
T ss_pred             Hhcc-CcccchhhhhhhhhhhhhhccchhHHHHHHHHHHHHHHHHhhhhHHhhHHHHHHHHhhh---hhhHHHHHHHHHH
Confidence            3322 11222345566777777777777778888777766666554433333333333222223   2333455555555


Q ss_pred             HHHHHH
Q 017249          344 LLQDMV  349 (375)
Q Consensus       344 ~l~~l~  349 (375)
                      .+..++
T Consensus       541 ~l~~l~  546 (759)
T KOG0211|consen  541 NLPALV  546 (759)
T ss_pred             HhHHHH
Confidence            555554

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=95.82  E-value=0.74  Score=43.72  Aligned_cols=190  Identities=12%  Similarity=0.098  Sum_probs=123.6

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---hhHHHHHHcCChHHHHHhhcCC-------ChHHHHHHHHHHHHhhc
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNE---RNKVKIATAGAIPPLVELLKFQ-------NGTLRELAAAAILTLSA  139 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---~~r~~i~~~g~i~~Lv~lL~~~-------~~~~~~~a~~~L~~Ls~  139 (375)
                      ...+..++...+.+-+-.|+-.+..++++..   .+|..+++.-|++.+-++|.+.       +...+..++.+|...+.
T Consensus        13 ~~~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~   92 (698)
T KOG2611|consen   13 LDDCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCR   92 (698)
T ss_pred             hhhHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhC
Confidence            3346667777777778889988888887533   3677899998899998888653       23457778888888888


Q ss_pred             cCCC--hhHHHhcCChHHHHHHhccC-C------HHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHH
Q 017249          140 AAPN--KPAIAASGAAPLLVQILHSG-S------VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKF  210 (375)
Q Consensus       140 ~~~~--~~~i~~~~~l~~L~~lL~~~-~------~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~  210 (375)
                      .++-  .+.++  ..||.|.+.+... +      ..+...+..+|..++..+.....++..|+++.+.++-.-.+.. .-
T Consensus        93 ~pElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Lia~G~~~~~~Q~y~~~~~~-~d  169 (698)
T KOG2611|consen   93 VPELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLIASGGLRVIAQMYELPDGS-HD  169 (698)
T ss_pred             ChhhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHHhcCchHHHHHHHhCCCCc-hh
Confidence            8773  23333  4588899988654 2      2368889999999999888888999999999999876644322 11


Q ss_pred             HHHHHHHHHHhhCC----hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          211 AEKATALLEILSSS----EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       211 ~~~a~~~L~~l~~~----~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      ...++.++.-+...    ++.-..+.   ..+..+..-+.......+-+.|..|..+-.
T Consensus       170 ~alal~Vlll~~~~~~cw~e~~~~fl---ali~~va~df~~~~~a~KfElc~lL~~vl~  225 (698)
T KOG2611|consen  170 MALALKVLLLLVSKLDCWSETIERFL---ALIAAVARDFAVLHNALKFELCHLLSAVLS  225 (698)
T ss_pred             HHHHHHHHHHHHHhcccCcCCHHHHH---HHHHHHHHHHHHhhhHHHHHHHHHHHHHHh
Confidence            22244444333221    22222222   123333322333345567788888875443

>PF05918 API5: Apoptosis inhibitory protein 5 (API5); InterPro: IPR008383 This family consists of apoptosis inhibitory protein 5 (API5) sequences from several organisms

Probab=95.75  E-value=0.83  Score=44.87  Aligned_cols=144  Identities=13%  Similarity=0.139  Sum_probs=81.0

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ...++..++.++.++|..++..|++.|-.+|.++ +++...+     ++.|+++|.++++.....+=.+|..|...++..
T Consensus        57 ~~~Ai~a~~DLcEDed~~iR~~aik~lp~~ck~~-~~~v~kv-----aDvL~QlL~tdd~~E~~~v~~sL~~ll~~d~k~  130 (556)
T PF05918_consen   57 QEEAINAQLDLCEDEDVQIRKQAIKGLPQLCKDN-PEHVSKV-----ADVLVQLLQTDDPVELDAVKNSLMSLLKQDPKG  130 (556)
T ss_dssp             HHHHHHHHHHHHT-SSHHHHHHHHHHGGGG--T---T-HHHH-----HHHHHHHTT---HHHHHHHHHHHHHHHHH-HHH
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHhHHHHHHhH-HHHHhHH-----HHHHHHHHhcccHHHHHHHHHHHHHHHhcCcHH
Confidence            3456778888888888999999999999999887 6666654     688999999998777777777777777644422


Q ss_pred             HHHHHHcCChHHHHHhhc---CCChHHHHHHHHHHHHhhcc-CC--Ch-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249          103 KVKIATAGAIPPLVELLK---FQNGTLRELAAAAILTLSAA-AP--NK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~---~~~~~~~~~a~~~L~~Ls~~-~~--~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                              .+..|+..+.   ++++.+|+.++..|..=... ..  .. ..-.+.-++..+-++|.+-..+--.....+|
T Consensus       131 --------tL~~lf~~i~~~~~~de~~Re~~lkFl~~kl~~l~~~~~~p~~E~e~~i~~~ikkvL~DVTaeEF~l~m~lL  202 (556)
T PF05918_consen  131 --------TLTGLFSQIESSKSGDEQVRERALKFLREKLKPLKPELLTPQKEMEEFIVDEIKKVLQDVTAEEFELFMSLL  202 (556)
T ss_dssp             --------HHHHHHHHHH---HS-HHHHHHHHHHHHHHGGGS-TTTS---HHHHHHHHHHHHHHCTT--HHHHHHHHHHH
T ss_pred             --------HHHHHHHHHHhcccCchHHHHHHHHHHHHHHhhCcHHHhhchHHHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence                    2334444443   56788899998877552221 11  11 0112222344455556543333344444555


Q ss_pred             HHhcc
Q 017249          176 HYLST  180 (375)
Q Consensus       176 ~~L~~  180 (375)
                      ..+-.
T Consensus       203 ~~lk~  207 (556)
T PF05918_consen  203 KSLKI  207 (556)
T ss_dssp             HTSGG
T ss_pred             HhCcc
Confidence            55543

Apoptosis or programmed cell death is a physiological form of cell death that occurs in embryonic development and organ formation. It is characterised by biochemical and morphological changes such as DNA fragmentation and cell volume shrinkage. API5 is an anti apoptosis gene located in Homo sapiens chromosome 11, whose expression prevents the programmed cell death that occurs upon the deprivation of growth factors [,].; PDB: 3U0R_A 3V6A_A.

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=95.72  E-value=0.041  Score=44.98  Aligned_cols=103  Identities=18%  Similarity=0.228  Sum_probs=75.2

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC--CCCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249           32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPNLDAIESSLLALLNLAVRNERNKVKIATA  109 (375)
Q Consensus        32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~  109 (375)
                      ..+..++.+....++.++..+....++.....+...|.++.++.+..  +.+..++..++++|..-|. +..+|..+.+.
T Consensus        50 ~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~-d~~~r~~I~~~  128 (157)
T PF11701_consen   50 SLLDEGEMDSLIIAFSALTALFPGPPDVGSELFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACI-DKSCRTFISKN  128 (157)
T ss_dssp             HHHCCHHCCHHHHHHHHHHHHCTTTHHHHHHHCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTT-SHHHHHCCHHH
T ss_pred             HHHccccchhHHHHHHHHHHHhCCCHHHHHHHHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHc-cHHHHHHHHHH
Confidence            34445556688899999999999883344444556799999999998  7788889999998888776 56666666555


Q ss_pred             CChHHHHHhhcCC-ChH-HHHHHHHHHHH
Q 017249          110 GAIPPLVELLKFQ-NGT-LRELAAAAILT  136 (375)
Q Consensus       110 g~i~~Lv~lL~~~-~~~-~~~~a~~~L~~  136 (375)
                       +++.|-..++.. ++. ++..|+-.|..
T Consensus       129 -~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen  129 -YVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             -CHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             -HHHHHHHHHccccchHHHHHHHHHHHhc
Confidence             589999999644 555 67777776654

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF08569 Mo25: Mo25-like; InterPro: IPR013878 Mo25-like proteins are involved in both polarised growth and cytokinesis

Probab=95.72  E-value=1.7  Score=40.19  Aligned_cols=198  Identities=16%  Similarity=0.101  Sum_probs=140.6

Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCch-hhhh--cCC-cHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSS-PILD--ATA-VPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~-~i~~--~g~-i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      ...+.+..|+..|..-+-+.+..++....++.... +... ..++  ..- ...+..++... ..+.+...+..+|+...
T Consensus        73 ~~~dll~~Li~~L~~L~fEsrKdv~~if~~llr~~~~~~~~p~v~yl~~~~peil~~L~~gy-~~~dial~~g~mlRec~  151 (335)
T PF08569_consen   73 YRSDLLYLLIRNLPKLDFESRKDVAQIFSNLLRRQIGSRSPPTVDYLERHRPEILDILLRGY-ENPDIALNCGDMLRECI  151 (335)
T ss_dssp             HHHTHHHHHHHTGGGS-HHHHHHHHHHHHHHHT--BTTB--HHHHHHHT--THHHHHHHHGG-GSTTTHHHHHHHHHHHT
T ss_pred             HHhCHHHHHHHHhhhCCCcccccHHHHHHHHHhhccCCCCCchHHHHHhCCHHHHHHHHHHh-cCccccchHHHHHHHHH
Confidence            34688899999999999999999999999988653 3322 1121  123 44444444443 34456777899999999


Q ss_pred             CChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc---CChHHHHHHhhhCCHHHHHHH
Q 017249          223 SSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERA  299 (375)
Q Consensus       223 ~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~---g~v~~L~~ll~~~~~~~~~~A  299 (375)
                      .++...+.++ ....+..+..++..++-.+...|..++..+-..+. .....++..   ........++.+++.-+|..+
T Consensus       152 k~e~l~~~iL-~~~~f~~ff~~~~~~~Fdiasdaf~t~~~llt~hk-~~~a~fl~~n~d~ff~~~~~Ll~s~NYvtkrqs  229 (335)
T PF08569_consen  152 KHESLAKIIL-YSECFWKFFKYVQLPNFDIASDAFSTFKELLTRHK-KLVAEFLSNNYDRFFQKYNKLLESSNYVTKRQS  229 (335)
T ss_dssp             TSHHHHHHHH-TSGGGGGHHHHTTSSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHCT-SSHHHHHHH
T ss_pred             hhHHHHHHHh-CcHHHHHHHHHhcCCccHhHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHHHHHHHccCCCeEeehhh
Confidence            9998888888 57899999999999999999999999998776663 444555543   367778889999999999999


Q ss_pred             HHHHHHhhcCChh-----h-hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          300 RTLLDLLRDTPQE-----K-RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       300 ~~~L~~l~~~~~~-----~-~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ..+|.-+--.+..     + +-...-+.-++..|.   +.+.-.+-.|=-+.+.++..
T Consensus       230 lkLL~ellldr~n~~vm~~yi~~~~nLkl~M~lL~---d~sk~Iq~eAFhvFKvFVAN  284 (335)
T PF08569_consen  230 LKLLGELLLDRSNFNVMTRYISSPENLKLMMNLLR---DKSKNIQFEAFHVFKVFVAN  284 (335)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTT-HHHHHHHHHHTT----S-HHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHchhHHHHHHHHHCCHHHHHHHHHHhc---CcchhhhHHHHHHHHHHHhC
Confidence            9999988765533     1 223446676776664   56677888888888888654

In fission yeast Mo25 is localised alternately to the spindle pole body and to the site of cell division in a cell cycle dependent manner [, ]. ; PDB: 2WTK_A 1UPK_A 3GNI_A 1UPL_A.

>KOG2032 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.68  E-value=0.91  Score=43.23  Aligned_cols=148  Identities=12%  Similarity=0.011  Sum_probs=88.0

Q ss_pred             hccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249          160 LHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGI  238 (375)
Q Consensus       160 L~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  238 (375)
                      ..+++..++..|+..|.|.+.. ++-+..... -.+..++.-|.++.. ..+...+..+|..+...-.+....-.--.+.
T Consensus       267 a~dp~a~~r~~a~r~L~~~as~~P~kv~th~~-~~ldaii~gL~D~~~-~~V~leam~~Lt~v~~~~~~~~l~~~~l~ia  344 (533)
T KOG2032|consen  267 ATDPSAKSRGMACRGLGNTASGAPDKVRTHKT-TQLDAIIRGLYDDLN-EEVQLEAMKCLTMVLEKASNDDLESYLLNIA  344 (533)
T ss_pred             ccCchhHHHHHHHHHHHHHhccCcHHHHHhHH-HHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHhhhhcchhhhchhHH
Confidence            4566778899999999999977 433333222 234445544555432 4566667777765554333332211111345


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      ..+..+.++.++.++..|...+..|+.......+..+.+  .+...+|+-.+.+.+|.+-.++-..++.|.-+
T Consensus       345 lrlR~l~~se~~~~R~aa~~Lfg~L~~l~g~~~e~~Fte~v~k~~~~lllhl~d~~p~va~ACr~~~~~c~p~  417 (533)
T KOG2032|consen  345 LRLRTLFDSEDDKMRAAAFVLFGALAKLAGGGWEEFFTEQVKKRLAPLLLHLQDPNPYVARACRSELRTCYPN  417 (533)
T ss_pred             HHHHHHHHhcChhhhhhHHHHHHHHHHHcCCCchhhhHHHHHhccccceeeeCCCChHHHHHHHHHHHhcCch
Confidence            567788888899999988887777665433233444443  23444555556677787777666677666543

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=95.63  E-value=0.018  Score=32.72  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=25.9

Q ss_pred             ChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          280 AIPGLLRLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       280 ~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      ++|.+++++.++++++|..|+.+|..++++
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            368899999999999999999999998764

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>PF12719 Cnd3: Nuclear condensing complex subunits, C-term domain

Probab=95.60  E-value=0.59  Score=42.63  Aligned_cols=113  Identities=13%  Similarity=0.144  Sum_probs=82.6

Q ss_pred             hHHHHHH-HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-hh
Q 017249           25 ALIEELS-DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE-RN  102 (375)
Q Consensus        25 ~~l~~Lv-~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~-~~  102 (375)
                      +.+..|| ..+++.++.++..|+++|+-.+--+ .+...     ..++.+...++.++..++..|++++.-+..-.. ..
T Consensus        26 ~ll~~lI~P~v~~~~~~vR~~al~cLGl~~Lld-~~~a~-----~~l~l~~~~~~~~~~~v~~~al~~l~Dll~~~g~~~   99 (298)
T PF12719_consen   26 SLLDSLILPAVQSSDPAVRELALKCLGLCCLLD-KELAK-----EHLPLFLQALQKDDEEVKITALKALFDLLLTHGIDI   99 (298)
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhC-hHHHH-----HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCchh
Confidence            5666666 6778999999999999999999877 32222     226777888877789999999999998774211 11


Q ss_pred             -HHH------HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249          103 -KVK------IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus       103 -r~~------i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                       ...      ......+..+...+.+.+++++..++..++.|...+..
T Consensus       100 ~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~a~EGl~KLlL~~~i  147 (298)
T PF12719_consen  100 FDSESDNDESVDSKSLLKILTKFLDSENPELQAIAVEGLCKLLLSGRI  147 (298)
T ss_pred             ccchhccCccchHhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCC
Confidence             111      11234567788888888999999999999998776553

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=95.54  E-value=0.15  Score=43.29  Aligned_cols=99  Identities=16%  Similarity=0.109  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-----CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249          211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVED-----GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL  285 (375)
Q Consensus       211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~  285 (375)
                      .-+++.+|..++++|+.+..++ ++.+--.|..+|..     .-+.+|-.++++++.+..++.+.....+....++|.++
T Consensus       117 vcnaL~lLQclaShPetk~~Fl-~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLltTeivPLcL  195 (315)
T COG5209         117 VCNALNLLQCLASHPETKKVFL-DAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLLTTEIVPLCL  195 (315)
T ss_pred             HHHHHHHHHHHhcCcchheeee-ecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHHhhhHHHHHH
Confidence            3568888999999999999988 56666677777742     22567889999999999998888888888999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          286 RLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       286 ~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++++.++.-.+.-|+.++..+-.+.
T Consensus       196 rIme~gSElSktvaifI~qkil~dD  220 (315)
T COG5209         196 RIMELGSELSKTVAIFIFQKILGDD  220 (315)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHhccc
Confidence            9999999999999999998876555

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=95.52  E-value=1.4  Score=40.97  Aligned_cols=283  Identities=13%  Similarity=0.138  Sum_probs=149.0

Q ss_pred             HHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--C--------CCCHHHHHHHHHHHHH
Q 017249           26 LIEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--V--------SPNLDAIESSLLALLN   94 (375)
Q Consensus        26 ~l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~--------~~~~~~~~~a~~~L~~   94 (375)
                      .-..+++-|..+- +..+..++..+.-|+.+.  ..-..+-....+..|+.+.  +        ..+.++...++.+|.|
T Consensus        46 L~e~i~~Vle~~~p~t~~v~~LetvrILSRdk--~~L~~~~~~q~~~~ll~~A~ls~~e~sl~~v~d~~vi~EslKCLcN  123 (532)
T KOG4464|consen   46 LGERIFEVLENGEPLTHRVVCLETVRILSRDK--DGLEPLTNDQLCQKLLALAELSSNENSLPTVADMHVIMESLKCLCN  123 (532)
T ss_pred             HHHHHHHHHhcCCCchhhhhHHHHHHHHhccc--cccccccchHHHHHHHHHHHhccccCCCCcccchHHHHHHHHHHHH
Confidence            3445566665554 445566667777776655  2211111111233333332  1        1246889999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcC-----CChHHHHHHHHHHHHhhccC-CChh-HHHhcCChHHHHHHhccC----
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAA-PNKP-AIAASGAAPLLVQILHSG----  163 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~-~~~~-~i~~~~~l~~L~~lL~~~----  163 (375)
                      +...++..|..+.+......+++.+..     ....+...=+..|.-|..-. ..+. .+...+|++.+.+.+.+.    
T Consensus       124 lvf~Sq~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~Gl~~lt~~led~lgid  203 (532)
T KOG4464|consen  124 LVFHSQRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLGLELLTNWLEDKLGID  203 (532)
T ss_pred             HHhccHHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcccHHHHHHhhccccCC
Confidence            999999999999998877777776632     12233444444454444332 2343 445789999999998642    


Q ss_pred             -----C------HHHHHHHHHHHHHhccCCCCchh---hhh----cCCcHHHHHHhhhccc-----------chHHHHHH
Q 017249          164 -----S------VQGRVDAVTALHYLSTCKENSSP---ILD----ATAVPPLINLLKDCKK-----------YSKFAEKA  214 (375)
Q Consensus       164 -----~------~~~~~~a~~~L~~L~~~~~~~~~---i~~----~g~i~~Lv~ll~~~~~-----------~~~~~~~a  214 (375)
                           +      ......++.++.|++....-...   -..    .++...++..+.....           -+.+...+
T Consensus       204 se~n~~~l~pqe~n~a~EaLK~~FNvt~~~~k~~ke~~~~~~r~l~~llr~cl~~vT~~~~~~elhshav~~L~nv~~k~  283 (532)
T KOG4464|consen  204 SEINVPPLNPQETNRACEALKVFFNVTCDSDKDVKEEHAIQARHLTILLRHCLLIVTLRDSTEELHSHAVNLLDNVPEKC  283 (532)
T ss_pred             CCcCCCCCCHHHHHHHHHHHHHHhheeeccccccchhhHHHHHHHHHHHHHHHhhccccchHHHHhhccCCccCCchhhh
Confidence                 1      13355667777888755321111   011    1233333333321110           01122333


Q ss_pred             HHHHHHhhCChhhhHHHhhccC-cHHHHHHHhcc---------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHH
Q 017249          215 TALLEILSSSEEGRIAITNSDG-GILTLVETVED---------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGL  284 (375)
Q Consensus       215 ~~~L~~l~~~~~~~~~~~~~~g-~v~~Lv~lL~~---------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L  284 (375)
                      +.++...-..+...+.+..-.| -.+.+..+|..         .........+.+|..+|..+  .......+..++|+|
T Consensus       284 ~~~~~~~~p~E~~sq~f~~~n~~~mdVi~~lLn~~~~qq~~~ss~~EllsPvlsVL~~car~~--R~~Rkylr~qVLPPL  361 (532)
T KOG4464|consen  284 LDVLAGAKPHECCSQCFEKRNGRNMDVILRLLNFSEKQQEKESSLHELLSPVLSVLTECARSH--RVMRKYLRQQVLPPL  361 (532)
T ss_pred             hhcccCCCCcchHHHHHHHhcchhHHHHHHHHHhhHHHHhhhhhhhhhhhhHHHHHHHHHhhh--HHHHHHHHHhcCCch
Confidence            3333211111111111111122 23444444432         12334456677888888776  445555666678877


Q ss_pred             HHHhh-----------------hCCHHHHHHHHHHHHHhhcCChh
Q 017249          285 LRLTV-----------------EGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       285 ~~ll~-----------------~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ...-.                 ..+..++.-|+..|..||..+-.
T Consensus       362 rDV~~RPEvg~tLRnkl~Rlmtl~~~~~K~vaAEfLFvLCKesV~  406 (532)
T KOG4464|consen  362 RDVSQRPEVGQTLRNKLVRLMTLPDSSVKDVAAEFLFVLCKESVN  406 (532)
T ss_pred             hhhhcCcchhHHHHHhhHhheeccchhhhhhhHHHHHHHhhcchh
Confidence            65433                 34456777788888888776644

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=95.50  E-value=1.5  Score=39.48  Aligned_cols=215  Identities=12%  Similarity=0.096  Sum_probs=151.3

Q ss_pred             ccccccchhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh----hHHHHHhc-CChHHHHHhhCCC
Q 017249            6 NKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK----TRSEFAAA-GVVQPLVLMLVSP   80 (375)
Q Consensus         6 ~~~~~~~~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~-g~v~~Lv~~L~~~   80 (375)
                      ++.+++.+...-...+...+.+..+|..+...+.+.+..+..+..++-... -.    +.+++... ..+..|+..-.. 
T Consensus        60 e~eP~~e~~~qLtqef~~~~~l~~lI~~l~~l~fE~rkD~~~ifnnllr~q-vgtr~~tv~Yl~t~~e~~~~lv~~~~~-  137 (342)
T KOG1566|consen   60 EAEPFAEAVAQLTQEFYNADVLSLLIQHLPKLEFESRKDVLQIFNNLLRRQ-VGTRSPTVEYLETNPEILDNLVKGYEN-  137 (342)
T ss_pred             CCCCChHHHHHHHHHHHhCCchHHHHHhhhcccchhhhHHHHHHHHHHHhh-cCCcchHHHHHHhCHHHHHHHHhhhcc-
Confidence            345666677777888999999999999999999999999999999987655 33    33333332 455556555222 


Q ss_pred             CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcC---C-hHH
Q 017249           81 NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASG---A-APL  155 (375)
Q Consensus        81 ~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~---~-l~~  155 (375)
                      .+++-..+-..|....+ .+.....+.....+......+..++-++...|..+...+...... ...+....   . .+.
T Consensus       138 ~~~iaL~cg~mlrEcir-he~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~vaEfl~~n~d~ff~e~  216 (342)
T KOG1566|consen  138 TPEIALTCGNMLRECIR-HEFLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVVAEFLIRNYDNFFAEV  216 (342)
T ss_pred             chHHHHHHHHHHHHHHh-hHHHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHHHHHHHhChhhhHHHH
Confidence            34555555555665555 566667777888899999999888888888888888887654431 11122222   2 344


Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhh----hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL----DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~----~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      --.++.+++.-++..+..+|..+-.+..|-..+.    +...+..++.+|++.+.  .++-.|-.+.+-+..++
T Consensus       217 ~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdksk--niQ~eAFhvFKvfvAnp  288 (342)
T KOG1566|consen  217 YEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSK--NIQLEAFHVFKVFVANP  288 (342)
T ss_pred             HHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccc--cchHHHHHHHHHHhcCC
Confidence            6678899999999999999999887665544433    34677888889988743  56677888888777654

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.35  E-value=5.3  Score=43.48  Aligned_cols=276  Identities=17%  Similarity=0.124  Sum_probs=143.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+|+|.+.=-++++.+|. |...|.+....++....+... ...++.|+.-|.+...++|+.++.+|..|-.+.+.  +.
T Consensus       999 LIPrLyRY~yDP~~~Vq~-aM~sIW~~Li~D~k~~vd~y~-neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~--~~ 1074 (1702)
T KOG0915|consen  999 LIPRLYRYQYDPDKKVQD-AMTSIWNALITDSKKVVDEYL-NEILDELLVNLTSKEWRVREASCLALADLLQGRPF--DQ 1074 (1702)
T ss_pred             hhHHHhhhccCCcHHHHH-HHHHHHHHhccChHHHHHHHH-HHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCCh--HH
Confidence            344444444467777774 444444444333133333222 35677888888888899999999999999986432  22


Q ss_pred             HHH--cCChHHHHHhhcCCChHHHHHH---HHHHHHhhcc-CCC----hhHHHhcCChHHHHHH-hccCCHHHHHHHHHH
Q 017249          106 IAT--AGAIPPLVELLKFQNGTLRELA---AAAILTLSAA-APN----KPAIAASGAAPLLVQI-LHSGSVQGRVDAVTA  174 (375)
Q Consensus       106 i~~--~g~i~~Lv~lL~~~~~~~~~~a---~~~L~~Ls~~-~~~----~~~i~~~~~l~~L~~l-L~~~~~~~~~~a~~~  174 (375)
                      +.+  ......+.+++++-.+.+|+.|   +.+|..|+.. .+.    +..-.-...+|.|++- +.+.-.+++..++.+
T Consensus      1075 ~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gims~v~evr~~si~t 1154 (1702)
T KOG0915|consen 1075 VKEKLPELWEAAFRVMDDIKESVREAADKAARALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIMSKVNEVRRFSIGT 1154 (1702)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcccchHHHHHHHHHH
Confidence            222  2345566666666666676654   4455555432 111    1111112334444431 113447889999999


Q ss_pred             HHHhccCCCC--chhhhhcCCcHHHHHHhhhcccchHHHHHHHHH----------HH-HhhCChhhhH---HHhh-----
Q 017249          175 LHYLSTCKEN--SSPILDATAVPPLINLLKDCKKYSKFAEKATAL----------LE-ILSSSEEGRI---AITN-----  233 (375)
Q Consensus       175 L~~L~~~~~~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~----------L~-~l~~~~~~~~---~~~~-----  233 (375)
                      +..|+.....  +..+  ...+|.|++....-. +..+--.++++          ++ +.+.+..--.   ..+.     
T Consensus      1155 l~dl~Kssg~~lkP~~--~~LIp~ll~~~s~lE-~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~ 1231 (1702)
T KOG0915|consen 1155 LMDLAKSSGKELKPHF--PKLIPLLLNAYSELE-PQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDIS 1231 (1702)
T ss_pred             HHHHHHhchhhhcchh--hHHHHHHHHHccccc-hHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHH
Confidence            9999865432  2222  245666666655431 11111112221          11 1121111000   0000     


Q ss_pred             -ccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          234 -SDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       234 -~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                       -...+|.+.++++.+ .-..+..++..+.-|+..-..+...  .....+..+...+++.++.+++..+.+...+...+
T Consensus      1232 vLeelip~l~el~R~sVgl~Tkvg~A~fI~~L~~r~~~emtP--~sgKll~al~~g~~dRNesv~kafAsAmG~L~k~S 1308 (1702)
T KOG0915|consen 1232 VLEELIPRLTELVRGSVGLGTKVGCASFISLLVQRLGSEMTP--YSGKLLRALFPGAKDRNESVRKAFASAMGYLAKFS 1308 (1702)
T ss_pred             HHHHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHhccccCc--chhHHHHHHhhccccccHHHHHHHHHHHHHHHhcC
Confidence             124566666666542 2334445555555544321111000  11225566667777889999999888888887665

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=95.31  E-value=0.086  Score=49.75  Aligned_cols=156  Identities=15%  Similarity=0.114  Sum_probs=89.0

Q ss_pred             hHHHHHHhccCCHHHHHHHHHHHHHhccC----CCCchhhhh---cCCcHHHHHHhhh-cccchHHHHHHHHHHHHhhCC
Q 017249          153 APLLVQILHSGSVQGRVDAVTALHYLSTC----KENSSPILD---ATAVPPLINLLKD-CKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       153 l~~L~~lL~~~~~~~~~~a~~~L~~L~~~----~~~~~~i~~---~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      ...++..|.+.....+..++|++.|++..    -++.+...+   .-.+..+...... +-...++..++.+.|+|+...
T Consensus       435 a~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~navraLgnllQv  514 (728)
T KOG4535|consen  435 ANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNAVRALGNLLQF  514 (728)
T ss_pred             HHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHhhHHHH
Confidence            34444455555567788899999988742    122111111   1122233332222 222346788899999988753


Q ss_pred             hh-----hhHHHhhccCcHHHHH-HHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHH
Q 017249          225 EE-----GRIAITNSDGGILTLV-ETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQE  297 (375)
Q Consensus       225 ~~-----~~~~~~~~~g~v~~Lv-~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~  297 (375)
                      -.     .-..+.  .+.+..++ ...-.+..+++-+||.++.||..+..-.....=+..-+.+.|..++. ..+..+|.
T Consensus       515 lq~i~~~~~~e~~--~~~~~~l~~~v~~~~~~kV~WNaCya~gNLfkn~a~~lq~~~wA~~~F~~L~~Lv~~~~NFKVRi  592 (728)
T KOG4535|consen  515 LQPIEKPTFAEII--EESIQALISTVLTEAAMKVRWNACYAMGNLFKNPALPLQTAPWASQAFNALTSLVTSCKNFKVRI  592 (728)
T ss_pred             HHHhhhccHHHHH--HHHHHhcccceecccccccchHHHHHHHHhhcCccccccCCCchHHHHHHHHHHHHHhccceEee
Confidence            22     111111  12222222 22234567899999999999988753111222233446788888776 46899999


Q ss_pred             HHHHHHHHhhcCC
Q 017249          298 RARTLLDLLRDTP  310 (375)
Q Consensus       298 ~A~~~L~~l~~~~  310 (375)
                      .|+.+|..-....
T Consensus       593 ~AA~aL~vp~~re  605 (728)
T KOG4535|consen  593 RAAAALSVPGKRE  605 (728)
T ss_pred             hhhhhhcCCCCcc
Confidence            9999988765544

>KOG2999 consensus Regulator of Rac1, required for phagocytosis and cell migration [Signal transduction mechanisms]

Probab=95.25  E-value=1.4  Score=42.56  Aligned_cols=157  Identities=20%  Similarity=0.199  Sum_probs=114.7

Q ss_pred             ChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhH
Q 017249          152 AAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRI  229 (375)
Q Consensus       152 ~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~  229 (375)
                      ....+.+++.+++...+..+...|..++.+..-...++...++..|.+++.++..  ...+...+++++..+-.+.-..-
T Consensus        84 ~a~~i~e~l~~~~~~~~~~a~k~l~sls~d~~fa~efi~~~gl~~L~~liedg~~~~~~~~L~~~L~af~elmehgvvsW  163 (713)
T KOG2999|consen   84 YAKRIMEILTEGNNISKMEALKELDSLSLDPTFAEEFIRCSGLELLFSLIEDGRVCMSSELLSTSLRAFSELMEHGVVSW  163 (713)
T ss_pred             HHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHhcchHHHHHHHHHcCccchHHHHHHHHHHHHHHHHhhceeee
Confidence            4567888999999888888999999998888888888899999999999998754  33455555666655543322111


Q ss_pred             HHhhccCcHHHHHHHhc--cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          230 AITNSDGGILTLVETVE--DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       230 ~~~~~~g~v~~Lv~lL~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      ..+ ...+|.....+..  ..+..+-..|+..|-++..++ +.....+.+.--++.|+..+...+..++.+|..++..+-
T Consensus       164 ~~~-~~~fV~~~a~~V~~~~~~a~~~~~AL~~LE~~vl~s-~~~~~~v~eev~i~~li~hlq~~n~~i~~~aial~nal~  241 (713)
T KOG2999|consen  164 ESV-SNDFVVSMASYVNAKREDANTLLAALQMLESLVLGS-DTLRQLVAEEVPIETLIRHLQVSNQRIQTCAIALLNALF  241 (713)
T ss_pred             eec-ccHHHHHHHHHHhhhhhcccchHHHHHHHHHHHhCC-hHHHHHHHhcCcHHHHHHHHHhcchHHHHHHHHHHHHHH
Confidence            122 2344555555542  233456678999999988887 356777778889999999999999999999999888876


Q ss_pred             cCC
Q 017249          308 DTP  310 (375)
Q Consensus       308 ~~~  310 (375)
                      ...
T Consensus       242 ~~a  244 (713)
T KOG2999|consen  242 RKA  244 (713)
T ss_pred             hhC
Confidence            544

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=95.23  E-value=1  Score=42.47  Aligned_cols=95  Identities=11%  Similarity=0.152  Sum_probs=78.2

Q ss_pred             CChHHHHHhhCCC---CHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CC---ChHHHHHHHHHHHHhhcc
Q 017249           68 GVVQPLVLMLVSP---NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQ---NGTLRELAAAAILTLSAA  140 (375)
Q Consensus        68 g~v~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~---~~~~~~~a~~~L~~Ls~~  140 (375)
                      .....|...++..   .+.+--.|+..+..+...+|..-..+.+.|.++.++..+. ..   +.++....-.++..||.+
T Consensus       106 ~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN  185 (379)
T PF06025_consen  106 SLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLIDAFLDAITAKGILPSSEVLTSLPNVLSAICLN  185 (379)
T ss_pred             hHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCChHHHHHHHhccCCCCcHHHHHHHHHHHhHHhcC
Confidence            3455555566554   4788889999999999999999999999999999999887 43   567777777889999999


Q ss_pred             CCChhHHHhcCChHHHHHHhcc
Q 017249          141 APNKPAIAASGAAPLLVQILHS  162 (375)
Q Consensus       141 ~~~~~~i~~~~~l~~L~~lL~~  162 (375)
                      ..+...+.+.+.++.+++++.+
T Consensus       186 ~~Gl~~~~~~~~l~~~f~if~s  207 (379)
T PF06025_consen  186 NRGLEKVKSSNPLDKLFEIFTS  207 (379)
T ss_pred             HHHHHHHHhcChHHHHHHHhCC
Confidence            9999999888999999888754

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>PF08045 CDC14: Cell division control protein 14, SIN component; InterPro: IPR012535 Cdc14 is a component of the septation initiation network (SIN) and is required for the localisation and activity of Sid1

Probab=95.11  E-value=0.29  Score=43.12  Aligned_cols=96  Identities=13%  Similarity=0.166  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhc
Q 017249           84 AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH  161 (375)
Q Consensus        84 ~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~  161 (375)
                      ....|++.|.-++--+|+.|..+.....+..|+.+|+. ..+.++..++.+|..+..+ +.|...+...+|+..++.+++
T Consensus       107 li~~aL~vLQGl~LLHp~Sr~lF~r~~~m~lll~LL~~~~~~~i~~a~L~tLv~iLld~p~N~r~FE~~~Gl~~v~~llk  186 (257)
T PF08045_consen  107 LIALALRVLQGLCLLHPPSRKLFHREQNMELLLDLLSPSNPPAIQSACLDTLVCILLDSPENQRDFEELNGLSTVCSLLK  186 (257)
T ss_pred             HHHHHHHHHHHHHHcCchHHHHHhhhhhHHHHHHHhccCCCchHHHHHHHHHHHHHHcChHHHHHHHHhCCHHHHHHHHc
Confidence            45668899999998899999999999999999999954 5788898999988887665 458888889999999999998


Q ss_pred             cC--CHHHHHHHHHHHHHhc
Q 017249          162 SG--SVQGRVDAVTALHYLS  179 (375)
Q Consensus       162 ~~--~~~~~~~a~~~L~~L~  179 (375)
                      +.  +.+++-.++..|+-..
T Consensus       187 ~~~~~~~~r~K~~EFL~fyl  206 (257)
T PF08045_consen  187 SKSTDRELRLKCIEFLYFYL  206 (257)
T ss_pred             cccccHHHhHHHHHHHHHHH
Confidence            77  4677777887776543

Sid1 is a protein kinase that localises asymmetrically to one spindle pole body (SPB) in anaphase disappears prior to cell separation [], [].

>PF11701 UNC45-central: Myosin-binding striated muscle assembly central; InterPro: IPR024660 The UNC-45 or small muscle protein 1 of Caenorhabditis elegans is expressed in two forms from different genomic positions in mammals: as a general tissue protein (UNC-45a) and as a specific form (UNC-45b) expressed only in striated and skeletal muscle

Probab=94.94  E-value=0.073  Score=43.49  Aligned_cols=147  Identities=18%  Similarity=0.144  Sum_probs=95.6

Q ss_pred             ChHHHHHhhcC--CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchh
Q 017249          111 AIPPLVELLKF--QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSP  187 (375)
Q Consensus       111 ~i~~Lv~lL~~--~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~  187 (375)
                      .+..++..|..  ..+++|..+.-++..+-  +..+.. ....+-+.+-..+..++.+....+..++..|-.. ++....
T Consensus         4 ~l~~lL~~L~~~~~~~~~r~~a~v~l~k~l--~~~~~~-~~~~~~~~i~~~~~~~~~d~~i~~~~~l~~lfp~~~dv~~~   80 (157)
T PF11701_consen    4 ELDTLLTSLDMLRQPEEVRSHALVILSKLL--DAAREE-FKEKISDFIESLLDEGEMDSLIIAFSALTALFPGPPDVGSE   80 (157)
T ss_dssp             CCCHHHHHHHCTTTSCCHHHHHHHHHHHHH--HHHHHH-HHHHHHHHHHHHHCCHHCCHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             HHHHHHHHhcccCCCHhHHHHHHHHHHHHH--HHhHHH-HHHHHHHHHHHHHccccchhHHHHHHHHHHHhCCCHHHHHH
Confidence            34556666654  47888988888888873  111111 1222233444444444444566677777777654 344444


Q ss_pred             hh-hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChH-HHHHHHHHHHH
Q 017249          188 IL-DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLV-STQHAVGALLS  262 (375)
Q Consensus       188 i~-~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~-~~~~a~~~L~~  262 (375)
                      +. ..|.++.++.++.+...+..+...++.+|..=|.+...|..+.  ..+++.|-..++ +.++. ++..|+-+|+.
T Consensus        81 l~~~eg~~~~l~~~~~~~~~~~~~~~~~lell~aAc~d~~~r~~I~--~~~~~~L~~~~~~~~~~~~ir~~A~v~L~K  156 (157)
T PF11701_consen   81 LFLSEGFLESLLPLASRKSKDRKVQKAALELLSAACIDKSCRTFIS--KNYVSWLKELYKNSKDDSEIRVLAAVGLCK  156 (157)
T ss_dssp             HCCTTTHHHHHHHHHH-CTS-HHHHHHHHHHHHHHTTSHHHHHCCH--HHCHHHHHHHTTTCC-HH-CHHHHHHHHHH
T ss_pred             HHhhhhHHHHHHHHHhcccCCHHHHHHHHHHHHHHHccHHHHHHHH--HHHHHHHHHHHccccchHHHHHHHHHHHhc
Confidence            44 5788999999998444466788888999987778888888777  479999999996 44455 78888877764

Myofibril formation requires both UNC-45 forms, consistent with the fact that the cytoskeleton is necessary for the development and maintenance of organised myofibrils []. Rng3 (Ring assembly protein 3), the homologue in Schizosaccharomyces pombe, is crucial for cell shape, normal actin cytoskeleton, and contractile ring assembly, and is essential for assembly of the myosin II-containing progenitors of the contractile ring. Widespread defects in the cytoskeleton are found in null mutants of all three fungal proteins []. Mammalian Unc45 is found to act as a specific chaperone during the folding of myosin and the assembly of striated muscle by forming a stable complex with the general chaperone Hsp90 []. All members carry up to three amino-terminal tetratricopeptide repeat (TPR) and a UCS domain at the C terminus that contains a number of Arm repeats. ; PDB: 3OPB_A 3NOW_A.

>PF06371 Drf_GBD: Diaphanous GTPase-binding Domain; InterPro: IPR010473 Diaphanous-related formins (Drfs) are a family of formin homology (FH) proteins that act as effectors of Rho small GTPases during growth factor-induced cytoskeletal remodelling, stress fibre formation, and cell division []

Probab=94.84  E-value=0.066  Score=45.05  Aligned_cols=82  Identities=15%  Similarity=0.241  Sum_probs=65.7

Q ss_pred             CCchhhhhcCCcHHHHHHhhhcc-------cchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          183 ENSSPILDATAVPPLINLLKDCK-------KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      .....+++.||+..|+++|..-.       .+......++.+|..+..+..+...++...+++..|+..|.+.+..++..
T Consensus        98 ~Wv~~Fl~~~G~~~L~~~L~~~~~~~~~~~~~~~~~~~~l~Clkal~n~~~G~~~v~~~~~~v~~i~~~L~s~~~~~r~~  177 (187)
T PF06371_consen   98 SWVQEFLELGGLEALLNVLSKLNKKKEKSEEDIDIEHECLRCLKALMNTKYGLEAVLSHPDSVNLIALSLDSPNIKTRKL  177 (187)
T ss_dssp             HHHHHH-HHHHHHHHHHHHHHHHTHHCTCTTCHHHHHHHHHHHHHHTSSHHHHHHHHCSSSHHHHHHHT--TTSHHHHHH
T ss_pred             hHHHHhccCCCHHHHHHHHHHhhhhhhhcchhHHHHHHHHHHHHHHHccHHHHHHHHcCcHHHHHHHHHHCCCCHHHHHH
Confidence            34566777888888888876431       22356677899999999999999999988899999999999999999999


Q ss_pred             HHHHHHHhc
Q 017249          256 AVGALLSLC  264 (375)
Q Consensus       256 a~~~L~~l~  264 (375)
                      ++.+|..+|
T Consensus       178 ~leiL~~lc  186 (187)
T PF06371_consen  178 ALEILAALC  186 (187)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999999887

Drf proteins are characterised by a variety of shared domains: an N-terminal GTPase-binding domain (GBD), formin-homology domains FH1, FH2 (IPR003104 from INTERPRO) and FH3 (IPR010472 from INTERPRO), and a C-terminal conserved Dia-autoregulatory domain (DAD) that binds the GBD. This entry represents the GBD, which is a bifunctional autoinhibitory domain that interacts with and is regulated by activated Rho family members. Mammalian Drf3 contains a CRIB-like motif within its GBD for binding to Cdc42, which is required for Cdc42 to activate and guide Drf3 towards the cell cortex where it remodels the actin skeleton [].; GO: 0003779 actin binding, 0017048 Rho GTPase binding, 0030036 actin cytoskeleton organization; PDB: 3OBV_A 2BNX_A 3EG5_D 2BAP_B 3O4X_B 1Z2C_B 2F31_A.

>PF02985 HEAT: HEAT repeat; InterPro: IPR000357 The HEAT repeat is a tandemly repeated, 37-47 amino acid long module occurring in a number of cytoplasmic proteins, including the four name-giving proteins huntingtin, elongation factor 3 (EF3), the 65 Kd alpha regulatory subunit of protein phosphatase 2A (PP2A) and the yeast PI3-kinase TOR1 []

Probab=94.71  E-value=0.088  Score=29.86  Aligned_cols=30  Identities=20%  Similarity=0.192  Sum_probs=26.0

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhh
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKK   55 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~   55 (375)
                      .+|.+++.+++++++++..|+.+|..+++.
T Consensus         1 llp~l~~~l~D~~~~VR~~a~~~l~~i~~~   30 (31)
T PF02985_consen    1 LLPILLQLLNDPSPEVRQAAAECLGAIAEH   30 (31)
T ss_dssp             HHHHHHHHHT-SSHHHHHHHHHHHHHHHHT
T ss_pred             CHHHHHHHcCCCCHHHHHHHHHHHHHHHhh
Confidence            378899999999999999999999998763

Arrays of HEAT repeats consists of 3 to 36 units forming a rod-like helical structure and appear to function as protein-protein interaction surfaces. It has been noted that many HEAT repeat-containing proteins are involved in intracellular transport processes. In the crystal structure of PP2A PR65/A [], the HEAT repeats consist of pairs of antiparallel alpha helices [].; GO: 0005515 protein binding; PDB: 3FGA_A 2PF4_C 2IAE_A 2BKU_D 3EA5_B 3ND2_A 2BPT_A 2NYL_A 2NPP_D 2PKG_B ....

>KOG4653 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.68  E-value=0.93  Score=46.07  Aligned_cols=218  Identities=14%  Similarity=0.096  Sum_probs=128.9

Q ss_pred             HHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCCh
Q 017249           74 VLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA  153 (375)
Q Consensus        74 v~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l  153 (375)
                      +..+.++-+.++-.++..|+.+... .+-...+...+++..++..|++.++.+--.|+..+..|+.-       -....+
T Consensus       733 i~sl~d~qvpik~~gL~~l~~l~e~-r~~~~~~~~ekvl~i~ld~LkdedsyvyLnaI~gv~~Lcev-------y~e~il  804 (982)
T KOG4653|consen  733 ISSLHDDQVPIKGYGLQMLRHLIEK-RKKATLIQGEKVLAIALDTLKDEDSYVYLNAIRGVVSLCEV-------YPEDIL  804 (982)
T ss_pred             HHHhcCCcccchHHHHHHHHHHHHh-cchhhhhhHHHHHHHHHHHhcccCceeeHHHHHHHHHHHHh-------cchhhH
Confidence            3444555567888999999999973 35556666788999999999999998888888877777653       224556


Q ss_pred             HHHHHH-hccC---CHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249          154 PLLVQI-LHSG---SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  228 (375)
Q Consensus       154 ~~L~~l-L~~~---~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~  228 (375)
                      |.|.+. ....   .++.+-..-.++.++... .+...... .-.+...++.++++  +...+..+++.++++|.-...+
T Consensus       805 ~dL~e~Y~s~k~k~~~d~~lkVGEai~k~~qa~Gel~~~y~-~~Li~tfl~gvrep--d~~~RaSS~a~lg~Lcq~~a~~  881 (982)
T KOG4653|consen  805 PDLSEEYLSEKKKLQTDYRLKVGEAILKVAQALGELVFKYK-AVLINTFLSGVREP--DHEFRASSLANLGQLCQLLAFQ  881 (982)
T ss_pred             HHHHHHHHhcccCCCccceehHHHHHHHHHHHhccHHHHHH-HHHHHHHHHhcCCc--hHHHHHhHHHHHHHHHHHHhhh
Confidence            666663 2211   122233333555555432 22222211 13444555555543  4456788889999988543321


Q ss_pred             H-HHhhccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHH--HcCChHHHHHHhhh-CCHHHHHHHHHHH
Q 017249          229 I-AITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLIL--KEGAIPGLLRLTVE-GTFEAQERARTLL  303 (375)
Q Consensus       229 ~-~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~--~~g~v~~L~~ll~~-~~~~~~~~A~~~L  303 (375)
                      - ..+  ...+..++.+.. +++..+|..|+..+..+-.+...+.-..+.  -.+....+..+... .+..++.+|..++
T Consensus       882 vsd~~--~ev~~~Il~l~~~d~s~~vRRaAv~li~~lL~~tg~dlLpilr~~l~Dl~~tl~~~vr~~~dd~~klhaql~l  959 (982)
T KOG4653|consen  882 VSDFF--HEVLQLILSLETTDGSVLVRRAAVHLLAELLNGTGEDLLPILRLLLIDLDETLLSYVRQHDDDGLKLHAQLCL  959 (982)
T ss_pred             hhHHH--HHHHHHHHHHHccCCchhhHHHHHHHHHHHHhccchhhHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHH
Confidence            1 111  235555555654 567889999999999887765433222221  12444455555553 3444555555544


Q ss_pred             H
Q 017249          304 D  304 (375)
Q Consensus       304 ~  304 (375)
                      .
T Consensus       960 e  960 (982)
T KOG4653|consen  960 E  960 (982)
T ss_pred             H
Confidence            4

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=94.65  E-value=0.84  Score=46.63  Aligned_cols=197  Identities=14%  Similarity=0.142  Sum_probs=126.5

Q ss_pred             HHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChH--HHHHHhccCCH-H
Q 017249           91 ALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAP--LLVQILHSGSV-Q  166 (375)
Q Consensus        91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~--~L~~lL~~~~~-~  166 (375)
                      +|.+.+..++++...+.+.|++..+...++.. +.+.+..++..+.+++...+.+........+.  .+-.++..-+. +
T Consensus       494 ~l~~~t~~~~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~~~~~~~~~~~~~~~~~~f~~~~~~w~~~e  573 (699)
T KOG3665|consen  494 ALWNITDENPETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEVLELRELLMIFEFIDFSVFKVLLNKWDSIE  573 (699)
T ss_pred             HHHhhhcCCHHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHhhcchhh
Confidence            78899999999999999999999999999865 67889999999999998776554443222222  34345555554 7


Q ss_pred             HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHH-HHHHh
Q 017249          167 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT-LVETV  245 (375)
Q Consensus       167 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~-Lv~lL  245 (375)
                      .-+.++..|..+..+.+.   -...+.-+.             +.+.-..   ++...+........ ...+.. +..++
T Consensus       574 rsY~~~siLa~ll~~~~~---~~~~~~r~~-------------~~~~l~e---~i~~~~~~~~~~~~-~~~f~~~~~~il  633 (699)
T KOG3665|consen  574 RSYNAASILALLLSDSEK---TTECVFRNS-------------VNELLVE---AISRWLTSEIRVIN-DRSFFPRILRIL  633 (699)
T ss_pred             HHHHHHHHHHHHHhCCCc---CccccchHH-------------HHHHHHH---HhhccCccceeehh-hhhcchhHHHHh
Confidence            788899998888765433   111111111             1111111   22222222221121 122222 44444


Q ss_pred             c-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhc
Q 017249          246 E-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       246 ~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~  308 (375)
                      . +..+..+..|++++.+++... ++..+.+.+.|+++.+..... .....+++.+...+..+..
T Consensus       634 ~~s~~~g~~lWal~ti~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~  697 (699)
T KOG3665|consen  634 RLSKSDGSQLWALWTIKNVLEQN-KEYCKLVRESNGFELIENIRVLSEVVDVKEEAVLVIESCEN  697 (699)
T ss_pred             cccCCCchHHHHHHHHHHHHHcC-hhhhhhhHhccchhhhhhcchhHHHHHHHHHHHHHhhcccc
Confidence            3 345778899999999999987 467888888999998887433 3367777777777665543

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=94.52  E-value=0.35  Score=46.41  Aligned_cols=112  Identities=16%  Similarity=0.155  Sum_probs=81.4

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--------HHHHHHc----CChHHHHHhhcCCChHHHHHHHHHHHH
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--------KVKIATA----GAIPPLVELLKFQNGTLRELAAAAILT  136 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--------r~~i~~~----g~i~~Lv~lL~~~~~~~~~~a~~~L~~  136 (375)
                      .+..|+++|.+  +++...+++.+.-+..+.+..        -..+++.    ..+|.|++-.+..+.+.+..-+.+|..
T Consensus       272 ~~~~L~~lL~~--~~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F~~~~p~L~~~~~~~~~~~k~~yL~ALs~  349 (415)
T PF12460_consen  272 LLDKLLELLSS--PELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFFTQVLPKLLEGFKEADDEIKSNYLTALSH  349 (415)
T ss_pred             HHHHHHHHhCC--hhhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHHHHHHHHHHHHHhhcChhhHHHHHHHHHH
Confidence            35667777766  577888999999888863332        2233332    346777777777777788888889999


Q ss_pred             hhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          137 LSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       137 Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                      +..+-+...... -...+|.|++.|..++..++..++.+|..+....
T Consensus       350 ll~~vP~~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~  396 (415)
T PF12460_consen  350 LLKNVPKSVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEA  396 (415)
T ss_pred             HHhhCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcC
Confidence            888755333332 2468899999999999999999999999887554

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=94.52  E-value=1.3  Score=39.49  Aligned_cols=222  Identities=15%  Similarity=0.037  Sum_probs=127.4

Q ss_pred             HHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHH
Q 017249           71 QPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIA  148 (375)
Q Consensus        71 ~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~  148 (375)
                      ..|=+.|.+++..+|..|+..|......-+...   ....-+..|+..+.+.  +......++..+..|.......... 
T Consensus         2 ~~Lg~~Ltsed~~~R~ka~~~Ls~vL~~lp~~~---L~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~-   77 (262)
T PF14500_consen    2 QSLGEYLTSEDPIIRAKALELLSEVLERLPPDF---LSRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES-   77 (262)
T ss_pred             cchhhhhCCCCHHHHHHHHHHHHHHHHhCCHhh---ccHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh-
Confidence            345577889999999999999998776544221   2222245666655432  5555556677777776433311111 


Q ss_pred             hcCChHHHHHHhcc--CCHHHHHHHHHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          149 ASGAAPLLVQILHS--GSVQGRVDAVTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       149 ~~~~l~~L~~lL~~--~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      ....+..+.+-.+.  .....+..+...+..|..... .... ...+.+..+++.+....++ .-...+..++..+...-
T Consensus        78 ~~~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~-~~~~fv~~~i~~~~gEkDP-RnLl~~F~l~~~i~~~~  155 (262)
T PF14500_consen   78 AVKILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQS-MGDDFVYGFIQLIDGEKDP-RNLLLSFKLLKVILQEF  155 (262)
T ss_pred             HHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHh-chhHHHHHHHHHhccCCCH-HHHHHHHHHHHHHHHhc
Confidence            11223333332221  234567788888888765421 1111 2245777888888777644 33444666666555432


Q ss_pred             hhhHHHhhccCcHHHHHHHhc---------cC-C--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCH
Q 017249          226 EGRIAITNSDGGILTLVETVE---------DG-S--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF  293 (375)
Q Consensus       226 ~~~~~~~~~~g~v~~Lv~lL~---------~~-~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~  293 (375)
                      +.       ....+.+...+.         .+ +  .-.++.-...|.+.-... +     ....-.+|.|++-+.++++
T Consensus       156 ~~-------~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~-~-----~fa~~~~p~LleKL~s~~~  222 (262)
T PF14500_consen  156 DI-------SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSST-P-----LFAPFAFPLLLEKLDSTSP  222 (262)
T ss_pred             cc-------chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCc-H-----hhHHHHHHHHHHHHcCCCc
Confidence            21       233344444431         11 1  224455555555543333 2     2456689999999999999


Q ss_pred             HHHHHHHHHHHHhhcCCh
Q 017249          294 EAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       294 ~~~~~A~~~L~~l~~~~~  311 (375)
                      .++..+..+|..|...-.
T Consensus       223 ~~K~D~L~tL~~c~~~y~  240 (262)
T PF14500_consen  223 SVKLDSLQTLKACIENYG  240 (262)
T ss_pred             HHHHHHHHHHHHHHHHCC
Confidence            999999999988876553

>KOG1967 consensus DNA repair/transcription protein Mms19 [Replication, recombination and repair; Transcription]

Probab=94.31  E-value=0.23  Score=50.50  Aligned_cols=154  Identities=16%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             hHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249           16 EEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSPNLDAIESSLLALL   93 (375)
Q Consensus        16 ~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~~~~~~~~a~~~L~   93 (375)
                      =.++++. .+.+|.|++...+.+-..|-.=+..|.+...+- |.  ..+..  ....|.|++.|+-+|..++..+.+++.
T Consensus       859 LykQRfF-~~ivP~l~~~~~t~~~~~K~~yl~~LshVl~~v-P~--~vllp~~~~LlPLLLq~Ls~~D~~v~vstl~~i~  934 (1030)
T KOG1967|consen  859 LYKQRFF-CDIVPILVSKFETAPGSQKHNYLEALSHVLTNV-PK--QVLLPQFPMLLPLLLQALSMPDVIVRVSTLRTIP  934 (1030)
T ss_pred             HHHHHHH-HhhHHHHHHHhccCCccchhHHHHHHHHHHhcC-CH--HhhccchhhHHHHHHHhcCCCccchhhhHhhhhh
Confidence            3344433 456888888888666666777778888887766 32  32322  257888999999999999999999998


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCC---hHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQN---GTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRV  169 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~---~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~  169 (375)
                      -+....+..... .-...+|.++.+=.+++   -.+|+.|+.+|..|... +...-.-....++..|.+.|+++...++.
T Consensus       935 ~~l~~~~tL~t~-~~~Tlvp~lLsls~~~~n~~~~VR~~ALqcL~aL~~~~P~~~l~~fr~~Vl~al~k~LdDkKRlVR~ 1013 (1030)
T KOG1967|consen  935 MLLTESETLQTE-HLSTLVPYLLSLSSDNDNNMMVVREDALQCLNALTRRLPTKSLLSFRPLVLRALIKILDDKKRLVRK 1013 (1030)
T ss_pred             HHHHhccccchH-HHhHHHHHHHhcCCCCCcchhHHHHHHHHHHHHHhccCCCcccccccHHHHHHhhhccCcHHHHHHH
Confidence            887655433322 12346788888766654   67899999999999984 43333334677899999999999888888


Q ss_pred             HHHHH
Q 017249          170 DAVTA  174 (375)
Q Consensus       170 ~a~~~  174 (375)
                      .|..+
T Consensus      1014 eAv~t 1018 (1030)
T KOG1967|consen 1014 EAVDT 1018 (1030)
T ss_pred             HHHHH
Confidence            88876

>PF06025 DUF913: Domain of Unknown Function (DUF913); InterPro: IPR010314 This is a domain of unknown function found towards the N terminus of a family of E3 ubiquitin protein ligases, including yeast TOM1, many of which appear to play a role in mRNA transcription and processing

Probab=94.06  E-value=1.4  Score=41.67  Aligned_cols=195  Identities=11%  Similarity=0.076  Sum_probs=118.2

Q ss_pred             HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH--HhccCC
Q 017249           87 SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ--ILHSGS  164 (375)
Q Consensus        87 ~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~--lL~~~~  164 (375)
                      .|++.|-.+....+..-..+...+|+..++..+...-....+.     ...........    .......+.  .+....
T Consensus         3 ~av~~ld~~~~~~~~a~~~f~~~~G~~~li~rl~~Ev~~~~~~-----~~~~~~~~~~~----~~~~~~~~~~~~i~~~r   73 (379)
T PF06025_consen    3 RAVRFLDTFIDSSPDAFAAFRNLNGLDILIDRLQYEVDFALEE-----NKNEEAGSGIP----PEYKESSVDGYSISYQR   73 (379)
T ss_pred             HHHHHHHHHHhccHHHHHHHHhCCCHHHHHHHHHHHHHHHHhc-----ccccCCCCCCC----CCcccccccccccCHHH
Confidence            4677777777767777888899999999999885432222211     00111111000    000000000  011111


Q ss_pred             HHHHHHHHHHHHHhcc-CC---CCchhhhh-cCCcHHHHHHhhhcc-cchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249          165 VQGRVDAVTALHYLST-CK---ENSSPILD-ATAVPPLINLLKDCK-KYSKFAEKATALLEILSSSEEGRIAITNSDGGI  238 (375)
Q Consensus       165 ~~~~~~a~~~L~~L~~-~~---~~~~~i~~-~g~i~~Lv~ll~~~~-~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  238 (375)
                      ....+..+..+..+.. +.   +..+.+.+ ...+..|..++.+.. ....+.-.|..++..+..++...-.++.+.|.+
T Consensus        74 ~~llK~lLk~l~~~~~~~~~~~~~lrnl~D~s~L~~sL~~Il~n~~~FG~~v~s~a~~ivs~~I~nePT~~~~l~e~Gl~  153 (379)
T PF06025_consen   74 QQLLKSLLKFLSHAMQHSGGFGDRLRNLIDSSSLLSSLKHILENPEVFGPSVFSLAINIVSDFIHNEPTSFSILQEAGLI  153 (379)
T ss_pred             HHHHHHHHHHHHHHhccCCCcccccccccchhhHHHHHHHHHhCccccchHHHHHHHHHHHHHHhcCCchhHHHHHcCCh
Confidence            2334444555555544 32   23334455 455666777777643 234566778888888887766666666689999


Q ss_pred             HHHHHHhc-c---CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249          239 LTLVETVE-D---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT  292 (375)
Q Consensus       239 ~~Lv~lL~-~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~  292 (375)
                      +.++..+. .   ++.++-...-.+|..||-+.  .+.+.+.+.+.++.+.+++.+.+
T Consensus       154 ~~~L~~i~~~~i~~s~e~l~~lP~~l~AicLN~--~Gl~~~~~~~~l~~~f~if~s~~  209 (379)
T PF06025_consen  154 DAFLDAITAKGILPSSEVLTSLPNVLSAICLNN--RGLEKVKSSNPLDKLFEIFTSPD  209 (379)
T ss_pred             HHHHHHHhccCCCCcHHHHHHHHHHHhHHhcCH--HHHHHHHhcChHHHHHHHhCCHH
Confidence            99998887 3   34555556667777888875  77889999999999999887654

This domain is found in association with and immediately C-terminal to another domain of unknown function: IPR010309 from INTERPRO.

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.90  E-value=0.79  Score=48.11  Aligned_cols=139  Identities=17%  Similarity=0.118  Sum_probs=99.5

Q ss_pred             ChHHHHHhhCC----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC
Q 017249           69 VVQPLVLMLVS----PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        69 ~v~~Lv~~L~~----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      ..|.+++..+.    ++++++..|.-+|+.+..-+.+.    ++ ..+|.|+..++ +++|.+|.+++-+++.++..-++
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iSa~f----ce-s~l~llftimeksp~p~IRsN~VvalgDlav~fpn  994 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCISAEF----CE-SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFPN  994 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhhHHH----HH-HHHHHHHHHHhcCCCceeeecchheccchhhhccc
Confidence            35556666643    46999999999999987544322    22 23788999997 67999999999999998875443


Q ss_pred             hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                          .-...-+.|...|++.++.++..|..+|.+|...+..+    -.|.+..+...+.++  ++.+...|-..+..|+
T Consensus       995 ----lie~~T~~Ly~rL~D~~~~vRkta~lvlshLILndmiK----VKGql~eMA~cl~D~--~~~IsdlAk~FF~Els 1063 (1251)
T KOG0414|consen  995 ----LIEPWTEHLYRRLRDESPSVRKTALLVLSHLILNDMIK----VKGQLSEMALCLEDP--NAEISDLAKSFFKELS 1063 (1251)
T ss_pred             ----ccchhhHHHHHHhcCccHHHHHHHHHHHHHHHHhhhhH----hcccHHHHHHHhcCC--cHHHHHHHHHHHHHhh
Confidence                11233567888999999999999999999997654322    247788888888776  4456665654444444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=93.83  E-value=0.73  Score=46.01  Aligned_cols=156  Identities=19%  Similarity=0.131  Sum_probs=97.6

Q ss_pred             HHHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           26 LIEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        26 ~l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ....+|+.| .+.||-.+..-+-.+.---.+.        ...++|+.|+.. .++.+.+++..|+-+|+-++.++++. 
T Consensus       519 ~Ad~lI~el~~dkdpilR~~Gm~t~alAy~GT--------gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp~~-  589 (929)
T KOG2062|consen  519 DADPLIKELLRDKDPILRYGGMYTLALAYVGT--------GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDPEQ-  589 (929)
T ss_pred             hhHHHHHHHhcCCchhhhhhhHHHHHHHHhcc--------CchhhHHHhhcccccccchHHHHHHHHHheeeEecChhh-
Confidence            345555544 4556666555443332211111        113457777776 57778899999999999988876643 


Q ss_pred             HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-C
Q 017249          104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-C  181 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~  181 (375)
                              +|..+++|.. .++-+|..++-+|.-.+....++..      +..|-.+..++..-+++.|+-++.-+.. .
T Consensus       590 --------~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG~~eA------i~lLepl~~D~~~fVRQgAlIa~amIm~Q~  655 (929)
T KOG2062|consen  590 --------LPSTVSLLSESYNPHVRYGAAMALGIACAGTGLKEA------INLLEPLTSDPVDFVRQGALIALAMIMIQQ  655 (929)
T ss_pred             --------chHHHHHHhhhcChhhhhhHHHHHhhhhcCCCcHHH------HHHHhhhhcChHHHHHHHHHHHHHHHHHhc
Confidence                    4566777754 4899999999999887776555443      4455555566667788888888776543 2


Q ss_pred             -CCCchhhhhcCCcHHHHHHhhhccc
Q 017249          182 -KENSSPILDATAVPPLINLLKDCKK  206 (375)
Q Consensus       182 -~~~~~~i~~~g~i~~Lv~ll~~~~~  206 (375)
                       +..+..+  .+..+.+.+++.+..+
T Consensus       656 t~~~~pkv--~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  656 TEQLCPKV--NGFRKQLEKVINDKHE  679 (929)
T ss_pred             ccccCchH--HHHHHHHHHHhhhhhh
Confidence             3333332  2355566677766543

>KOG1991 consensus Nuclear transport receptor RANBP7/RANBP8 (importin beta superfamily) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]

Probab=93.83  E-value=9.6  Score=39.70  Aligned_cols=317  Identities=13%  Similarity=0.073  Sum_probs=162.4

Q ss_pred             hHHHHHHHHhc------C--CCHHHHHHHHHHHHHHHhhCC--hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           25 ALIEELSDKLI------N--GDLETKIEAARDIRKVVKKSS--LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        25 ~~l~~Lv~~L~------s--~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      +.++.++..|.      .  .++..+.-|+..+++++..-.  ...+.. .+.=.+..+...++++.--+|-.|||.+..
T Consensus       410 k~l~F~~~Il~~~~~~~~~~~~~rqkdGAL~~vgsl~~~L~K~s~~~~~-mE~flv~hVfP~f~s~~g~Lrarac~vl~~  488 (1010)
T KOG1991|consen  410 KILSFIVDILTRYKEASPPNKNPRQKDGALRMVGSLASILLKKSPYKSQ-MEYFLVNHVFPEFQSPYGYLRARACWVLSQ  488 (1010)
T ss_pred             hHHHHHHHHHHhhcccCCCccChhhhhhHHHHHHHHHHHHccCCchHHH-HHHHHHHHhhHhhcCchhHHHHHHHHHHHH
Confidence            34555555554      1  245566668888888774220  111111 111235556667788888899999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCC-ChhHHH--hcCChHHHHHHhccCCHHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAP-NKPAIA--ASGAAPLLVQILHSGSVQGRVD  170 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~--~~~~l~~L~~lL~~~~~~~~~~  170 (375)
                      ++.-  +.+..-.-..+++.....|. +++-.++..|+-+|..+..+.+ ....+.  -.+.++.|+++.+.-+-+....
T Consensus       489 ~~~~--df~d~~~l~~ale~t~~~l~~d~~lPV~VeAalALq~fI~~~~~~~e~~~~hvp~~mq~lL~L~ne~End~Lt~  566 (1010)
T KOG1991|consen  489 FSSI--DFKDPNNLSEALELTHNCLLNDNELPVRVEAALALQSFISNQEQADEKVSAHVPPIMQELLKLSNEVENDDLTN  566 (1010)
T ss_pred             HHhc--cCCChHHHHHHHHHHHHHhccCCcCchhhHHHHHHHHHHhcchhhhhhHhhhhhHHHHHHHHHHHhcchhHHHH
Confidence            9942  23333333344666777776 6778899999999999887765 334343  2355566666665554444444


Q ss_pred             HHHHHHHhccCC-CCchhhhh--cCCcHHHHHHhhh----cccchHHHHHHHHHHHHhh---CChhhhHHHhh--ccCcH
Q 017249          171 AVTALHYLSTCK-ENSSPILD--ATAVPPLINLLKD----CKKYSKFAEKATALLEILS---SSEEGRIAITN--SDGGI  238 (375)
Q Consensus       171 a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~---~~~~~~~~~~~--~~g~v  238 (375)
                      ....+.  +... +......+  ........+++.+    ...++.-...|.++|..+.   .+-++...++.  +.-..
T Consensus       567 vme~iV--~~fseElsPfA~eL~q~La~~F~k~l~~~~~~~~~~ddk~iaA~GiL~Ti~Til~s~e~~p~vl~~le~~~l  644 (1010)
T KOG1991|consen  567 VMEKIV--CKFSEELSPFAVELCQNLAETFLKVLQTSEDEDESDDDKAIAASGILRTISTILLSLENHPEVLKQLEPIVL  644 (1010)
T ss_pred             HHHHHH--HHHHHhhchhHHHHHHHHHHHHHHHHhccCCCCccchHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            443332  1111 11111111  1233445555553    1111122344666665443   22222332221  12334


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhh
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSS  318 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g  318 (375)
                      +.+-..|.+.-...-+.++..+.++....+ +....+  =|..+.+.+.+......--....-+|.|............+
T Consensus       645 ~vi~~iL~~~i~dfyeE~~ei~~~~t~~~~-~Isp~m--W~ll~li~e~~~~~~~dyf~d~~~~l~N~vt~g~~~~~s~~  721 (1010)
T KOG1991|consen  645 PVIGFILKNDITDFYEELLEIVSSLTFLSK-EISPIM--WGLLELILEVFQDDGIDYFTDMMPALHNYVTYGTPSLLSNP  721 (1010)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhhhhhhc-ccCHHH--HHHHHHHHHHHhhhhHHHHHHHHHHHhhheeeCchhhhccc
Confidence            444455666556677777777777665442 111112  13456666666555444445555566665443322222211


Q ss_pred             ----hHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          319 ----VLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       319 ----~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                          .+-.++..+....+|...=-+.|.+++..+.
T Consensus       722 ~y~~il~~i~~~~l~~e~~~D~d~~~a~kLle~ii  756 (1010)
T KOG1991|consen  722 DYLQILLEIIKKVLTSENGEDSDCESACKLLEVII  756 (1010)
T ss_pred             hHHHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHH
Confidence                2222333332334454444456777776665

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=93.76  E-value=5.7  Score=36.81  Aligned_cols=157  Identities=13%  Similarity=0.100  Sum_probs=110.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhc-cChhhHHHHHHc-CC-hHHHHHhhcCC-----C--------hHHHHHHHHH
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAV-RNERNKVKIATA-GA-IPPLVELLKFQ-----N--------GTLRELAAAA  133 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~-~~~~~r~~i~~~-g~-i~~Lv~lL~~~-----~--------~~~~~~a~~~  133 (375)
                      ++.+...|++....+...+++.|..++. +.......+... +. .+.|.+++...     .        +.+|...+..
T Consensus        58 ~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~siR~~fI~F  137 (330)
T PF11707_consen   58 LKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKPSIRTNFIRF  137 (330)
T ss_pred             HHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCcCHHHHHHHH
Confidence            7888899999888889999999999998 665666666652 32 34555555321     1        2788888887


Q ss_pred             HHHhhccCC--Ch-hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH-hccCC----CCchhhhhcCCcHHHHHHhhhcc
Q 017249          134 ILTLSAAAP--NK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHY-LSTCK----ENSSPILDATAVPPLINLLKDCK  205 (375)
Q Consensus       134 L~~Ls~~~~--~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~----~~~~~i~~~g~i~~Lv~ll~~~~  205 (375)
                      +..+....+  .+ ..+...+.+..+.+-|...+.++....+.+|.. +..++    ..+..+.+...+..|..+.....
T Consensus       138 ~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~l~~Ly~~~~  217 (330)
T PF11707_consen  138 WLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQLASLYSRDG  217 (330)
T ss_pred             HHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHHHHHHhcccC
Confidence            777766544  23 344466778889999998888999999999884 44443    33445556678888998776553


Q ss_pred             c--chHHHHHHHHHHHHhhCChh
Q 017249          206 K--YSKFAEKATALLEILSSSEE  226 (375)
Q Consensus       206 ~--~~~~~~~a~~~L~~l~~~~~  226 (375)
                      +  ...+.+.+-..|..+|.++.
T Consensus       218 ~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  218 EDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             CcccchHHHHHHHHHHHHhcCCC
Confidence            2  22567778888888886543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>PLN03076 ARF guanine nucleotide exchange factor (ARF-GEF); Provisional

Probab=93.74  E-value=6.7  Score=44.37  Aligned_cols=297  Identities=11%  Similarity=0.064  Sum_probs=151.9

Q ss_pred             HHHHHHHHHhhCChhhHHHHHhcCChHHHHHh----hCCCCHHHHHHHHHHHHHhhccChhhHH---HHHHcCChHHHHH
Q 017249           45 AARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM----LVSPNLDAIESSLLALLNLAVRNERNKV---KIATAGAIPPLVE  117 (375)
Q Consensus        45 a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~----L~~~~~~~~~~a~~~L~~L~~~~~~~r~---~i~~~g~i~~Lv~  117 (375)
                      ++.-|..++..+  -+|-.++.......+.+.    -.+++..+...|+..|+.++...-+..+   .=.....+.+|..
T Consensus      1112 sLqKLveIa~~N--m~Rirl~W~~iW~~l~~hf~~vg~~~n~~va~fAidsLrQLs~kfle~eEL~~f~FQkefLkPfe~ 1189 (1780)
T PLN03076       1112 SLTKIVEIAHYN--MNRIRLVWSSIWHVLSDFFVTIGCSENLSIAIFAMDSLRQLSMKFLEREELANYNFQNEFMKPFVI 1189 (1780)
T ss_pred             HHHHHHHHHHhc--ccchheehHhHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHHHHhcchhhhhchhHHHHHHHHHHH
Confidence            444444444444  234444434433333332    2344667888888888888853221111   1122345678888


Q ss_pred             hhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cCCHHHHHHHHHHHHHhccCC-CCc-----h
Q 017249          118 LLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SGSVQGRVDAVTALHYLSTCK-ENS-----S  186 (375)
Q Consensus       118 lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~~~~~~~~a~~~L~~L~~~~-~~~-----~  186 (375)
                      ++.+. +.++++..+.|+.++......  .+  .-|++.+..+|.    ..++.+...|..++..+.... ...     .
T Consensus      1190 im~~s~~~eVrE~ILeCv~qmI~s~~~--nI--kSGWktIF~VLs~aa~d~~e~iV~lAFetl~~I~~d~f~~l~~~~~~ 1265 (1780)
T PLN03076       1190 VMRKSNAVEIRELIIRCVSQMVLSRVN--NV--KSGWKSMFMVFTTAAYDDHKNIVLLAFEIIEKIIREYFPYITETETT 1265 (1780)
T ss_pred             HHHhcCchHHHHHHHHHHHHHHHHHHh--hh--hcCcHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHhhhhhccccchh
Confidence            77654 789999999999998654321  12  226677777765    445677788888777665331 100     1


Q ss_pred             hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC----hh------------------------hhHHHhh----c
Q 017249          187 PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS----EE------------------------GRIAITN----S  234 (375)
Q Consensus       187 ~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~----~~------------------------~~~~~~~----~  234 (375)
                      .+  ...+..|..+..... +.++...|+..|++++..    +-                        .-..+..    .
T Consensus      1266 ~F--~DlV~cL~~Fa~q~~-~~nISL~AI~lL~~~~~~La~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~ 1342 (1780)
T PLN03076       1266 TF--TDCVNCLIAFTNSRF-NKDISLNAIAFLRFCATKLAEGDLGSSSRNKDKEAPPSSPQSGKDGKQESGEFTDKDDHL 1342 (1780)
T ss_pred             HH--HHHHHHHHHHHhCcC-cccccHHHHHHHHHHHHHHHhccccccccccccccccccccccccccccccccccchhHH
Confidence            11  124444444443322 234555666777655211    00                        0000000    0


Q ss_pred             cCcHHHHHHH---hccCChHHHHHHHHHHHHhcccCcHHHHHHHH---HcCChHHHHHHhhhC----------------C
Q 017249          235 DGGILTLVET---VEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL---KEGAIPGLLRLTVEG----------------T  292 (375)
Q Consensus       235 ~g~v~~Lv~l---L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~---~~g~v~~L~~ll~~~----------------~  292 (375)
                      ...++.|..+   ..+.+.++|..|+.+|..+....+...-..++   =.+++-++...++..                +
T Consensus      1343 ~lW~pLL~~Ls~l~~D~RlEVR~~ALqtLF~iL~~yG~~Fs~~~W~~if~~VLFPIFd~l~~~~~~~~~~~~~~~~~~~~ 1422 (1780)
T PLN03076       1343 YFWFPLLAGLSELSFDPRPEIRKSALQVLFDTLRNHGHLFSLPLWERVFESVLFPIFDYVRHAIDPSGGDEPEGQGVDGD 1422 (1780)
T ss_pred             HHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHhhcccccccccccccccc
Confidence            1244444444   45678999999999998775543322222233   245666666554321                0


Q ss_pred             -----HH--HHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHH
Q 017249          293 -----FE--AQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       293 -----~~--~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~-~g~~~~~~~a~~~l~~l~~~  351 (375)
                           ..  ..+-+..+|..+..--..  ..+ .+.++.++.+|.+.. .......+....+|++|+..
T Consensus      1423 ~~~~e~~~Wl~eT~~~AL~~lvdLft~fFd~L-~~~L~~~l~ll~~ci~q~n~~la~ig~~~l~~li~~ 1490 (1780)
T PLN03076       1423 QGELDQDAWLYETCTLALQLVVDLFVKFYPTV-NPLLKKVLMLLVSFIKRPHQSLAGIGIAAFVRLMSN 1490 (1780)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHHH
Confidence                 01  234444456665543322  111 124444444433322 22355667777777777644

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.71  E-value=0.34  Score=41.81  Aligned_cols=88  Identities=23%  Similarity=0.160  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHhhCChhhhHHHhhccCcHH-------HHHHHhc-cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChH
Q 017249          211 AEKATALLEILSSSEEGRIAITNSDGGIL-------TLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP  282 (375)
Q Consensus       211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~-------~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~  282 (375)
                      +..++.+|+.|+..+.|...++. .+-..       .|+++|. .+++..|+-|+..|.+||..+..-++..-.+.+.|.
T Consensus       141 qrlaLEaLcKLsV~e~NVDliLa-Tpp~sRlE~l~~~L~r~l~~~e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~  219 (257)
T PF12031_consen  141 QRLALEALCKLSVIENNVDLILA-TPPFSRLERLFHTLVRLLGMREDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCIS  219 (257)
T ss_pred             HHHHHHHHHHhheeccCcceeee-CCCHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHH
Confidence            57799999999999888888774 44433       3444443 467889999999999999998544444445689999


Q ss_pred             HHHHHhhhCCHHHHHHH
Q 017249          283 GLLRLTVEGTFEAQERA  299 (375)
Q Consensus       283 ~L~~ll~~~~~~~~~~A  299 (375)
                      .|+.++++.....+..+
T Consensus       220 ~Li~FiE~a~~~~~~~~  236 (257)
T PF12031_consen  220 HLIAFIEDAEQNAHQVA  236 (257)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999997765554433

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.65  E-value=0.25  Score=34.45  Aligned_cols=67  Identities=15%  Similarity=0.180  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249          168 RVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDG  236 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  236 (375)
                      .+.++|++.+++..+.....+-+.++++.++++..+++ .-.++-.|..+|.-++.+.++.+.+- +.|
T Consensus         4 lKaaLWaighIgss~~G~~lL~~~~iv~~iv~~a~~s~-v~siRGT~fy~Lglis~T~~G~~~L~-~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGSSPLGIQLLDESDIVEDIVKIAENSP-VLSIRGTCFYVLGLISSTEEGAEILD-ELG   70 (73)
T ss_pred             HHHHHHHHHhHhcChHHHHHHhhcCHHHHHHHHHHhCC-ccchHHHHHHHHHHHhCCHHHHHHHH-HcC
Confidence            57899999999998877777777899999999999865 44678889999999999999888776 444

>PF14668 RICTOR_V: Rapamycin-insensitive companion of mTOR, domain 5

Probab=93.30  E-value=0.28  Score=34.17  Aligned_cols=66  Identities=9%  Similarity=0.122  Sum_probs=54.2

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcC
Q 017249           85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASG  151 (375)
Q Consensus        85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~  151 (375)
                      .+.+++++++++. ++..-..+.+.+.++.++++.++ +...+|-.+..+|.-++...+..+.+.+.|
T Consensus         4 lKaaLWaighIgs-s~~G~~lL~~~~iv~~iv~~a~~s~v~siRGT~fy~Lglis~T~~G~~~L~~~g   70 (73)
T PF14668_consen    4 LKAALWAIGHIGS-SPLGIQLLDESDIVEDIVKIAENSPVLSIRGTCFYVLGLISSTEEGAEILDELG   70 (73)
T ss_pred             HHHHHHHHHhHhc-ChHHHHHHhhcCHHHHHHHHHHhCCccchHHHHHHHHHHHhCCHHHHHHHHHcC
Confidence            6789999999998 66677777778999999999875 478899999999999998877766665444

>KOG2933 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.27  E-value=1.3  Score=39.83  Aligned_cols=140  Identities=18%  Similarity=0.198  Sum_probs=99.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+...+..|.+++++.+...+..|..|+... ++...-+. .-++-.+++-+++....+...|+.++..+...   ....
T Consensus        89 al~~~l~~L~s~dW~~~vdgLn~irrLs~fh-~e~l~~~L-~~vii~vvkslKNlRS~VsraA~~t~~difs~---ln~~  163 (334)
T KOG2933|consen   89 ALKQALKKLSSDDWEDKVDGLNSIRRLSEFH-PESLNPML-HEVIIAVVKSLKNLRSAVSRAACMTLADIFSS---LNNS  163 (334)
T ss_pred             HHHHHHHHhchHHHHHHhhhHHHHHHHHhhh-HHHHHHHH-HHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH---HHHH
Confidence            5677889999999999999999999999887 44444332 23567778888888889999999999988863   2222


Q ss_pred             HHHcCChHHHHHhh-cC---CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          106 IATAGAIPPLVELL-KF---QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       106 i~~~g~i~~Lv~lL-~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      +..  -+..++.+| ..   .+.-+++.|-.+|..+..+-..      ...++.|...+.+.++.++..++.+..+.
T Consensus       164 i~~--~ld~lv~~Ll~ka~~dnrFvreda~kAL~aMV~~vtp------~~~L~~L~~~~~~~n~r~r~~a~~~~~~~  232 (334)
T KOG2933|consen  164 IDQ--ELDDLVTQLLHKASQDNRFVREDAEKALVAMVNHVTP------QKLLRKLIPILQHSNPRVRAKAALCFSRC  232 (334)
T ss_pred             HHH--HHHHHHHHHHhhhcccchHHHHHHHHHHHHHHhccCh------HHHHHHHHHHHhhhchhhhhhhhcccccc
Confidence            222  233344333 22   2566788888888888665432      23467778888889999988888776554

>KOG0414 consensus Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.24  E-value=1.5  Score=46.14  Aligned_cols=141  Identities=18%  Similarity=0.079  Sum_probs=109.1

Q ss_pred             HHHHHHHHhc----CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccCh
Q 017249           26 LIEELSDKLI----NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        26 ~l~~Lv~~L~----s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      ..|.+++.++    .++|+.|..|.-+|.+++--+ .+...     --++.|+..+. ++++.++-.++-+++-++...|
T Consensus       920 f~piv~e~c~n~~~~sdp~Lq~AAtLaL~klM~iS-a~fce-----s~l~llftimeksp~p~IRsN~VvalgDlav~fp  993 (1251)
T KOG0414|consen  920 FAPIVVEGCRNPGLFSDPELQAAATLALGKLMCIS-AEFCE-----SHLPLLFTIMEKSPSPRIRSNLVVALGDLAVRFP  993 (1251)
T ss_pred             HHHHHHHHhcCCCcCCCHHHHHHHHHHHHHHhhhh-HHHHH-----HHHHHHHHHHhcCCCceeeecchheccchhhhcc
Confidence            4566666664    468999999999999998666 22222     23788999987 7889999999999998887544


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      ..-+.     ..+.|...|...++.+|+.|+-+|.+|..+    ..+...|.+.-+..+|.+++..+..-|=.....|+.
T Consensus       994 nlie~-----~T~~Ly~rL~D~~~~vRkta~lvlshLILn----dmiKVKGql~eMA~cl~D~~~~IsdlAk~FF~Els~ 1064 (1251)
T KOG0414|consen  994 NLIEP-----WTEHLYRRLRDESPSVRKTALLVLSHLILN----DMIKVKGQLSEMALCLEDPNAEISDLAKSFFKELSS 1064 (1251)
T ss_pred             cccch-----hhHHHHHHhcCccHHHHHHHHHHHHHHHHh----hhhHhcccHHHHHHHhcCCcHHHHHHHHHHHHHhhh
Confidence            32222     356788888899999999999999999774    344567999999999999999988888877777775


Q ss_pred             C
Q 017249          181 C  181 (375)
Q Consensus       181 ~  181 (375)
                      .
T Consensus      1065 k 1065 (1251)
T KOG0414|consen 1065 K 1065 (1251)
T ss_pred             c
Confidence            4

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=93.06  E-value=6.9  Score=39.32  Aligned_cols=116  Identities=18%  Similarity=0.082  Sum_probs=81.7

Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249           67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      .|.+..++....+++..++...+..|..+.. +...++.-+-.+..+.+..-+....|.+|..|+.+|..+-.++...  
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d-~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de--  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSD-ENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE--  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhc-cccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC--
Confidence            3556677777788899999999999999987 3344555555666778888888889999999999999986443210  


Q ss_pred             HHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhh
Q 017249          147 IAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILD  190 (375)
Q Consensus       147 i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  190 (375)
                        +..+...+..+++ +++++++..|+.   +++.++.....|++
T Consensus       161 --e~~v~n~l~~liqnDpS~EVRRaaLs---nI~vdnsTlp~Ive  200 (892)
T KOG2025|consen  161 --ECPVVNLLKDLIQNDPSDEVRRAALS---NISVDNSTLPCIVE  200 (892)
T ss_pred             --cccHHHHHHHHHhcCCcHHHHHHHHH---hhccCcccchhHHH
Confidence              1234566777775 557888887654   55555555555543

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=93.06  E-value=5.8  Score=37.79  Aligned_cols=174  Identities=12%  Similarity=0.058  Sum_probs=103.5

Q ss_pred             CHHHHHHHHHHHHHhhcc-ChhhHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH
Q 017249           81 NLDAIESSLLALLNLAVR-NERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ  158 (375)
Q Consensus        81 ~~~~~~~a~~~L~~L~~~-~~~~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~  158 (375)
                      ..+-++.|+.-|..+..+ +...+.+.+. ..+..++++|.. .++..+..|++.|..++.+.+.+-.=...-++..+++
T Consensus       300 ~a~~~k~alsel~~m~~e~sfsvWeq~f~-~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q~~~l~DstE~ai~K~Le  378 (516)
T KOG2956|consen  300 RASERKEALSELPKMLCEGSFSVWEQHFA-EILLLLLEVLSDSEDEIIKKLALRVLREMLTNQPARLFDSTEIAICKVLE  378 (516)
T ss_pred             chhHHHHHHHHHHHHHHccchhHHHHHHH-HHHHHHHHHHccchhhHHHHHHHHHHHHHHHhchHhhhchHHHHHHHHHH
Confidence            456677787756555543 3333443322 235578888887 5888899999999999887654322222344566666


Q ss_pred             HhccCCHHHHHHHHHH-HHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC--hhhhHHHhhcc
Q 017249          159 ILHSGSVQGRVDAVTA-LHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITNSD  235 (375)
Q Consensus       159 lL~~~~~~~~~~a~~~-L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~  235 (375)
                      .-.+.+.++...|... +..++...+.....       .+..++.+.+  ......++..+..++..  .+.--.++  .
T Consensus       379 aa~ds~~~v~~~Aeed~~~~las~~P~~~I~-------~i~~~Ilt~D--~~~~~~~iKm~Tkl~e~l~~EeL~~ll--~  447 (516)
T KOG2956|consen  379 AAKDSQDEVMRVAEEDCLTTLASHLPLQCIV-------NISPLILTAD--EPRAVAVIKMLTKLFERLSAEELLNLL--P  447 (516)
T ss_pred             HHhCCchhHHHHHHHHHHHHHHhhCchhHHH-------HHhhHHhcCc--chHHHHHHHHHHHHHhhcCHHHHHHhh--h
Confidence            6666666665555544 44455443322111       1222222322  22333455556666542  33333344  4


Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhccc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~  266 (375)
                      .+.|.+++..++.+..+|+.|+.+|..+...
T Consensus       448 diaP~~iqay~S~SS~VRKtaVfCLVamv~~  478 (516)
T KOG2956|consen  448 DIAPCVIQAYDSTSSTVRKTAVFCLVAMVNR  478 (516)
T ss_pred             hhhhHHHHHhcCchHHhhhhHHHhHHHHHHH
Confidence            6888889999999999999999999887653

>PF12031 DUF3518: Domain of unknown function (DUF3518); InterPro: IPR021906 This presumed domain is functionally uncharacterised

Probab=93.01  E-value=0.5  Score=40.86  Aligned_cols=125  Identities=24%  Similarity=0.191  Sum_probs=81.7

Q ss_pred             hHHHHHHHHHHHHhhccCC---ChhHHHhcCChHHHHHHhccC---------------CHHHHHHHHHHHHHhccCCCCc
Q 017249          124 GTLRELAAAAILTLSAAAP---NKPAIAASGAAPLLVQILHSG---------------SVQGRVDAVTALHYLSTCKENS  185 (375)
Q Consensus       124 ~~~~~~a~~~L~~Ls~~~~---~~~~i~~~~~l~~L~~lL~~~---------------~~~~~~~a~~~L~~L~~~~~~~  185 (375)
                      ..+|+.|+-+|.|++..=+   ..+.| ....++.|++..-++               ...-+..|+.+|+.|+..+.|.
T Consensus        80 ~~lREnalV~laNisgqLdLs~~~e~I-~~PildGLLHWaVcpsa~A~Dpfp~~~~~~~lSPqrlaLEaLcKLsV~e~NV  158 (257)
T PF12031_consen   80 EQLRENALVTLANISGQLDLSDYPESI-ARPILDGLLHWAVCPSAEAQDPFPTAGPHSPLSPQRLALEALCKLSVIENNV  158 (257)
T ss_pred             HHHhhcceEeeeeeeeeeecccCchHH-HHHHHHHHHHHHhccchhccCCCCCCCCCCCCCHHHHHHHHHHHhheeccCc
Confidence            4567888888888875422   11111 122233344333221               1234899999999999999999


Q ss_pred             hhhhhcCCcH-------HHHHHhhhcccchHHHHHHHHHHHHhhCCh-hhhHHHhhccCcHHHHHHHhccCCh
Q 017249          186 SPILDATAVP-------PLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGSL  250 (375)
Q Consensus       186 ~~i~~~g~i~-------~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~~~~  250 (375)
                      ..+...+-+.       .|++++... ++...++.|.-+|.+|+... .....+....+.|..|+.++.+...
T Consensus       159 DliLaTpp~sRlE~l~~~L~r~l~~~-e~~v~REfAvvlL~~La~~~~~~~r~iA~q~~~i~~Li~FiE~a~~  230 (257)
T PF12031_consen  159 DLILATPPFSRLERLFHTLVRLLGMR-EDQVCREFAVVLLSNLAQGDEAAARAIAMQKPCISHLIAFIEDAEQ  230 (257)
T ss_pred             ceeeeCCCHHHHHHHHHHHHHHhccc-cchhHHHHHHHHHHHHhcccHHHHHHHHHhhchHHHHHHHHHHHHH
Confidence            9888765444       344444443 35678999999999999754 4444455567899999999976543

This domain is found in eukaryotes. This domain is about 260 amino acids in length. This domain is found associated with PF01388 from PFAM.

>COG5209 RCD1 Uncharacterized protein involved in cell differentiation/sexual development [General function prediction only]

Probab=92.95  E-value=4  Score=34.98  Aligned_cols=144  Identities=16%  Similarity=0.105  Sum_probs=101.9

Q ss_pred             HHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhh---hcccchHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHHH
Q 017249          166 QGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCKKYSKFAEKATALLEILSSS--EEGRIAITNSDGGILT  240 (375)
Q Consensus       166 ~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~~  240 (375)
                      .-...|+..|..+++.++.+..++++...-.+...+.   +.+..+.++..++++++.|..+  +...+++. ....||.
T Consensus       115 nRvcnaL~lLQclaShPetk~~Fl~AhiplflypfLntss~~~~fEyLRltsLGVIgaLvkNdsq~vi~fLl-tTeivPL  193 (315)
T COG5209         115 NRVCNALNLLQCLASHPETKKVFLDAHIPLFLYPFLNTSSSNSKFEYLRLTSLGVIGALVKNDSQYVIKFLL-TTEIVPL  193 (315)
T ss_pred             hHHHHHHHHHHHHhcCcchheeeeecccceeeHhhhhccccCCccceeeehHHHHHHHHHhCCCHHHHHHHH-hhhHHHH
Confidence            3466788888889999999999988765444444443   3334456777899999999864  55667777 5789999


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhcccCcH--HHHHHHHH----cCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          241 LVETVEDGSLVSTQHAVGALLSLCQSCRD--KYRQLILK----EGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       241 Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~--~~~~~l~~----~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++.+++.+++.-+..|+.++..+..++..  -.++.+-+    ..++..++. +...++.+.-+++.++--.++..+
T Consensus       194 cLrIme~gSElSktvaifI~qkil~dDvGLqYiCqT~eRFyAv~~vln~mv~qlVs~~~~RLlKh~iRcYlRLsd~p  270 (315)
T COG5209         194 CLRIMELGSELSKTVAIFIFQKILGDDVGLQYICQTFERFYAVNLVLNSMVSQLVSLGSTRLLKHAIRCYLRLSDKP  270 (315)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHheeecCCH
Confidence            99999999998899999999888766531  11222212    223333333 555678888899999877777766

>KOG2274 consensus Predicted importin 9 [Intracellular trafficking, secretion, and vesicular transport; Nuclear structure]

Probab=92.78  E-value=13  Score=38.34  Aligned_cols=226  Identities=14%  Similarity=0.069  Sum_probs=142.0

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHH
Q 017249           36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPP  114 (375)
Q Consensus        36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~  114 (375)
                      +..|.....+.+++..++... ..+...+  ...+...+..+. +..+-++..|++++...++- .....  ...+++..
T Consensus       461 ~e~P~Ll~Ra~~~i~~fs~~~-~~~~~~~--~~fl~~~v~~l~~~~~~~~ki~a~~~~~~~~~~-~vl~~--~~p~ild~  534 (1005)
T KOG2274|consen  461 QESPFLLLRAFLTISKFSSST-VINPQLL--QHFLNATVNALTMDVPPPVKISAVRAFCGYCKV-KVLLS--LQPMILDG  534 (1005)
T ss_pred             ccCHHHHHHHHHHHHHHHhhh-ccchhHH--HHHHHHHHHhhccCCCCchhHHHHHHHHhccCc-eeccc--cchHHHHH
Confidence            567777777888887666553 1111111  112334444443 33456788888888877731 11111  12466778


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc--cCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249          115 LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH--SGSVQGRVDAVTALHYLSTCKENSSPILDAT  192 (375)
Q Consensus       115 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~--~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g  192 (375)
                      |+++....+.++......+|+..+..++......+....|.++.++.  ++++.+...+-.++..|+....+...+ ..-
T Consensus       535 L~qlas~~s~evl~llmE~Ls~vv~~dpef~as~~skI~P~~i~lF~k~s~DP~V~~~~qd~f~el~q~~~~~g~m-~e~  613 (1005)
T KOG2274|consen  535 LLQLASKSSDEVLVLLMEALSSVVKLDPEFAASMESKICPLTINLFLKYSEDPQVASLAQDLFEELLQIAANYGPM-QER  613 (1005)
T ss_pred             HHHHcccccHHHHHHHHHHHHHHhccChhhhhhhhcchhHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHhhcch-HHH
Confidence            88888878888888888899998888776677677777887777653  456777667777777776543333332 234


Q ss_pred             CcHHHHHHhhhcc--cchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHh-ccCChHHHHHHHHHHHHhcccCc
Q 017249          193 AVPPLINLLKDCK--KYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETV-EDGSLVSTQHAVGALLSLCQSCR  268 (375)
Q Consensus       193 ~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~~a~~~L~~l~~~~~  268 (375)
                      .+|.+++++....  .+......++.+|..+.. .+..-...+. .-++|.+.+.. .+++...-..+-.+|..+...+.
T Consensus       614 ~iPslisil~~~~~~~~~~l~~~aidvLttvvr~tp~pL~~~l~-~~~FpaVak~tlHsdD~~tlQ~~~EcLra~Is~~~  692 (1005)
T KOG2274|consen  614 LIPSLISVLQLNADKAPAGLCAIAIDVLTTVLRNTPSPLPNLLI-CYAFPAVAKITLHSDDHETLQNATECLRALISVTL  692 (1005)
T ss_pred             HHHHHHHHHcCcccccCchhhHHHHHHHHHHHhcCCCCccHHHH-HHHhHHhHhheeecCChHHHHhHHHHHHHHHhcCH
Confidence            8999999998653  123455667777876654 3333333331 24667777665 45566677788888888887764


Q ss_pred             H
Q 017249          269 D  269 (375)
Q Consensus       269 ~  269 (375)
                      +
T Consensus       693 e  693 (1005)
T KOG2274|consen  693 E  693 (1005)
T ss_pred             H
Confidence            3

>PF12460 MMS19_C: RNAPII transcription regulator C-terminal; InterPro: IPR024687 This domain, approximately 60 amino acids in length, is found in the N-terminal region of MMS19 proteins

Probab=92.53  E-value=10  Score=36.35  Aligned_cols=186  Identities=16%  Similarity=0.124  Sum_probs=114.4

Q ss_pred             ChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCC----HHHHHHHHHHHHHhcc-CCC
Q 017249          111 AIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGS----VQGRVDAVTALHYLST-CKE  183 (375)
Q Consensus       111 ~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~----~~~~~~a~~~L~~L~~-~~~  183 (375)
                      .+..++.+..+. ++..+..++.+++.+..--.....  -...+..+...+ ...+    ........|....|.. +++
T Consensus       190 ll~~l~~~~~~~~~~~~~~~~~~~la~LvNK~~~~~~--l~~~l~~~~~~~~~~~~~~~~~~~~~~~~Wi~KaLv~R~~~  267 (415)
T PF12460_consen  190 LLQSLLNLALSSEDEFSRLAALQLLASLVNKWPDDDD--LDEFLDSLLQSISSSEDSELRPQALEILIWITKALVMRGHP  267 (415)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHcCCCChhh--HHHHHHHHHhhhcccCCcchhHHHHHHHHHHHHHHHHcCCc
Confidence            455666665444 677888888888888764222111  112333333333 1222    2334444555555542 222


Q ss_pred             CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhh-------------hHHHhhccCcHHHHHHHhccCC
Q 017249          184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEG-------------RIAITNSDGGILTLVETVEDGS  249 (375)
Q Consensus       184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~-------------~~~~~~~~g~v~~Lv~lL~~~~  249 (375)
                      ..     ...+..|+.++.+.    .+...+.+.+.-+..+ ++.             ++.+.  .-.+|.|++..+..+
T Consensus       268 ~~-----~~~~~~L~~lL~~~----~~g~~aA~~f~il~~d~~~~l~~~~~a~vklLykQR~F--~~~~p~L~~~~~~~~  336 (415)
T PF12460_consen  268 LA-----TELLDKLLELLSSP----ELGQQAAKAFGILLSDSDDVLNKENHANVKLLYKQRFF--TQVLPKLLEGFKEAD  336 (415)
T ss_pred             hH-----HHHHHHHHHHhCCh----hhHHHHHHHHhhHhcCcHHhcCccccchhhhHHhHHHH--HHHHHHHHHHHhhcC
Confidence            21     12456677777763    3456677777766655 221             22333  235666776666666


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ...+..-+.+|.++..+-+.   ..+..  ...+|.|++.+...++.++..+..+|..+-...++
T Consensus       337 ~~~k~~yL~ALs~ll~~vP~---~vl~~~l~~LlPLLlqsL~~~~~~v~~s~L~tL~~~l~~~~~  398 (415)
T PF12460_consen  337 DEIKSNYLTALSHLLKNVPK---SVLLPELPTLLPLLLQSLSLPDADVLLSSLETLKMILEEAPE  398 (415)
T ss_pred             hhhHHHHHHHHHHHHhhCCH---HHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCHH
Confidence            66888889999999887742   22322  46899999999999999999999999999887754

MMS19 is required for both nucleotide excision repair (NER) and RNA polymerase II (RNAP II) transcription [].

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=92.45  E-value=7  Score=34.22  Aligned_cols=137  Identities=23%  Similarity=0.164  Sum_probs=88.3

Q ss_pred             HHHHHHHh-cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKL-INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L-~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      ++.|+..+ +..+++.+...+..|..++.++ ..+...     +++.|..+.+.++.+.+--+.+.+..+-..++...  
T Consensus         2 l~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~-~~~~~~-----v~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r~f--   73 (234)
T PF12530_consen    2 LPLLLYKLGKISDPELQLPLLEALPSLACHK-NVCVPP-----VLQTLVSLVEQGSLELRYVALRLLTLLWKANDRHF--   73 (234)
T ss_pred             hHHHHHHhcCCCChHHHHHHHHHHHHHhccC-ccchhH-----HHHHHHHHHcCCchhHHHHHHHHHHHHHHhCchHH--
Confidence            34555534 4778999999999999999887 233332     36677777777777766666676766665433222  


Q ss_pred             HHHcCChHHHHHhh--------cCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHH
Q 017249          106 IATAGAIPPLVELL--------KFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTA  174 (375)
Q Consensus       106 i~~~g~i~~Lv~lL--------~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~  174 (375)
                          +.+..++..+        .+.  ..+.....+.++..++...++    .....++.+..+| ++.++.++..++.+
T Consensus        74 ----~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~~~~~~alale~  145 (234)
T PF12530_consen   74 ----PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSCDEVAQALALEA  145 (234)
T ss_pred             ----HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence                2333333331        111  233444445677777776554    2235677888888 77788889999999


Q ss_pred             HHHhc
Q 017249          175 LHYLS  179 (375)
Q Consensus       175 L~~L~  179 (375)
                      |..|+
T Consensus       146 l~~Lc  150 (234)
T PF12530_consen  146 LAPLC  150 (234)
T ss_pred             HHHHH
Confidence            99998

>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]

Probab=92.28  E-value=2.8  Score=42.99  Aligned_cols=285  Identities=13%  Similarity=0.089  Sum_probs=160.8

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--------C---HH-------
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--------N---LD-------   83 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--------~---~~-------   83 (375)
                      +-...+..-+.+|.-+....+..+...+.......  ..-+.|-..++++.|+.++++-        +   ++       
T Consensus       436 v~~~vv~~~~~l~~cs~~~~~~~~~~ff~~~f~fr--ail~~fd~~d~l~~l~~~~~~~~~~~~~n~d~~l~e~~i~ss~  513 (1516)
T KOG1832|consen  436 VIHQVVKLAIELLDCSQDQARKNSALFFAAAFVFR--AILDAFDAQDSLQKLLAILKDAASVTGANTDRSLPEVMISSSK  513 (1516)
T ss_pred             HHHHHHHHHHHHHhcchhhccchHHHHHHHHHHHH--HHHHHHhhhhHHHHHHHHHHHHHHHhccCcCccccHHHhhhhh
Confidence            34445555566665444444445555444443333  4555565667788888877531        1   12       


Q ss_pred             -HHHHHHHHHHHhh-----ccChhhHHHHHHcCChHHHHHhhcCCC------hHHHHHHHHHHHHhhcc--------CCC
Q 017249           84 -AIESSLLALLNLA-----VRNERNKVKIATAGAIPPLVELLKFQN------GTLRELAAAAILTLSAA--------APN  143 (375)
Q Consensus        84 -~~~~a~~~L~~L~-----~~~~~~r~~i~~~g~i~~Lv~lL~~~~------~~~~~~a~~~L~~Ls~~--------~~~  143 (375)
                       .-...+.+|+...     -.-+..+..-...|+++..+.-+..+.      -+..+..++-+-.+...        .+.
T Consensus       514 Q~~~htC~alR~Yf~AHl~Ikve~~~k~~~~r~~~g~~~~~i~~~~~P~~~s~~~~e~I~~q~e~~~~~gp~f~~~~w~~  593 (1516)
T KOG1832|consen  514 QMAFHTCFALRQYFRAHLLIKVESIRKSRISRGGVGSSMKNIRAAYKPLDISNEAVEAIFLQLEKDRRLGPTFVKAQWPA  593 (1516)
T ss_pred             hhhhhhHHHHHHHHHHHHHHHHHhhhhhhcccCCCCccccccccCCCcchhhhhHHHHHHHHHHHHHHhChhhhhhcchH
Confidence             2223444444322     112223444445555555555443321      11222333322222111        123


Q ss_pred             hhHHHhcCChHHHHHHhccC--------CHHHHHHHHHHHHHhccCCCCchhhhhc--------CCcHHHHHHhhhc--c
Q 017249          144 KPAIAASGAAPLLVQILHSG--------SVQGRVDAVTALHYLSTCKENSSPILDA--------TAVPPLINLLKDC--K  205 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~--------~~~~~~~a~~~L~~L~~~~~~~~~i~~~--------g~i~~Lv~ll~~~--~  205 (375)
                      ..-+...+++..++.++..+        ..+....|+.+|+-++.-++.+..+...        .++..++..-...  .
T Consensus       594 aenflkls~v~~~L~l~~~~~~w~~~spR~d~~~~Al~vL~i~t~iP~iq~~La~~~~~n~~aydGiaIiL~~a~g~~~i  673 (1516)
T KOG1832|consen  594 AENFLKLSGVVTMLELCQTPPVWRYLSPRHDLLQYALGVLHIVTSIPDIQKALAHATLSNNRAYDGIAIILDAANGSNSI  673 (1516)
T ss_pred             HHHHHHhHHHHHHHHHHhcCccccccCcchHHHHHHHhheeeeEecchHHHHHHHHHhhcccccCceEEEeecccccccc
Confidence            34556778888888887543        2467889999999888888877766531        2555554443322  1


Q ss_pred             cchHHHHHHHHHHHHhhCCh-hhhHHH----------------------------------hhccCcHHHHHHHhccC--
Q 017249          206 KYSKFAEKATALLEILSSSE-EGRIAI----------------------------------TNSDGGILTLVETVEDG--  248 (375)
Q Consensus       206 ~~~~~~~~a~~~L~~l~~~~-~~~~~~----------------------------------~~~~g~v~~Lv~lL~~~--  248 (375)
                      .++.++..|+.+|-|+...+ +++...                                  ++...++..|+.+|.-.  
T Consensus       674 ~Dpei~~~AL~vIincVc~pp~~r~s~i~~v~S~~g~~r~~l~~~~ks~~le~~l~~mw~~Vr~ndGIkiLl~Ll~~k~P  753 (1516)
T KOG1832|consen  674 VDPEIIQPALNVIINCVCPPPTTRPSTIVAVGSQSGDRRIFLGAGTKSAKLEQVLRQMWEAVRGNDGIKILLKLLQYKNP  753 (1516)
T ss_pred             cCHHHHHHHHhhhheeecCCCCcchhhhhhccccCCCccccccCCCchHHHHHHHHHHHHHHhcCccHHHHHHHHhccCC
Confidence            25678899999998876544 333322                                  23567899999998643  


Q ss_pred             ---ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC-----ChHHHHH--Hhh-hCCH--HHHHHHHHHHHHhhcCC
Q 017249          249 ---SLVSTQHAVGALLSLCQSCRDKYRQLILKEG-----AIPGLLR--LTV-EGTF--EAQERARTLLDLLRDTP  310 (375)
Q Consensus       249 ---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g-----~v~~L~~--ll~-~~~~--~~~~~A~~~L~~l~~~~  310 (375)
                         .+.+|..||.+|.-|+.++  ..++.+.+.-     .+..|+.  +.. ..+.  ...+.|+.+|......+
T Consensus       754 ~t~aD~IRalAc~~L~GLaR~~--tVrQIltKLpLvt~~~~q~lm~ePV~~Dkr~~H~~fck~A~~Ll~~~~g~~  826 (1516)
T KOG1832|consen  754 PTTADCIRALACRVLLGLARDD--TVRQILTKLPLVTNERAQILMAEPVTYDKRHEHLQFCKLASALLKEAQGTP  826 (1516)
T ss_pred             CCcHHHHHHHHHHHHhccccCc--HHHHHHHhCccccchHHHHHhhCcccccchhHHHHHHHHHHHHHHHHhCCc
Confidence               3578999999999999986  6777776543     3333433  111 2233  33466888888776653

>PF11707 Npa1: Ribosome 60S biogenesis N-terminal; InterPro: IPR021714 Npa1p is required for ribosome biogenesis and operates in the same functional environment as Rsa3p and Dbp6p during early maturation of 60S ribosomal subunits []

Probab=92.24  E-value=9.5  Score=35.31  Aligned_cols=165  Identities=12%  Similarity=0.009  Sum_probs=115.5

Q ss_pred             HHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CC-hHHHHHhhCCC-----C--------H
Q 017249           18 AWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GV-VQPLVLMLVSP-----N--------L   82 (375)
Q Consensus        18 ~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~-v~~Lv~~L~~~-----~--------~   82 (375)
                      +..+-.. .++.+.+.|++........+++.+..+...........+.+. +. .+.+-+++...     .        +
T Consensus        50 ~~~iL~~-~~k~lyr~L~~~~~~~~~~~LrLL~~iv~f~~g~~a~~v~~~fd~~~~~l~kll~~~~~~~~~~~~~~~~~~  128 (330)
T PF11707_consen   50 IRSILQN-HLKLLYRSLSSSKPSLTNPALRLLTAIVSFDGGALAREVLRSFDFSLKSLPKLLTPRKKEKEKDSESSKSKP  128 (330)
T ss_pred             HHHHHHH-HHHHHHHHhCcCcHHHHHHHHHHHHHHHccCCHHHHHHHHHhcCCchhhHHHHhccccccccccccccccCc
Confidence            3344433 388888899888888888999999999984324555555543 43 44555555321     1        2


Q ss_pred             HHHHHHHHHHHH-hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHH-hhccCC----ChhHHHhcCChHH
Q 017249           83 DAIESSLLALLN-LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILT-LSAAAP----NKPAIAASGAAPL  155 (375)
Q Consensus        83 ~~~~~a~~~L~~-L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~----~~~~i~~~~~l~~  155 (375)
                      .+|...++.+.. +...++..+..+.. .+.+..+.+-|...++++....+.+|.. +..+..    .|..+.....+..
T Consensus       129 siR~~fI~F~Lsfl~~~~~~~~~~lL~~~~~~~~l~k~l~~D~~~~v~~iL~~l~~~Vl~~~~v~r~~K~~~fn~~~L~~  208 (330)
T PF11707_consen  129 SIRTNFIRFWLSFLSSGDPELKRDLLSQKKLMSALFKGLRKDPPETVILILETLKDKVLKDSSVSRSTKCKLFNEWTLSQ  208 (330)
T ss_pred             CHHHHHHHHHHHHHccCCHHHHHHHHHcCchHHHHHhcccCCCHHHHHHHHHHHHHHhccCCCCChhhhhhhcCHHHHHH
Confidence            778888875555 44556667777776 5678889999988889999999999986 444432    2445567778899


Q ss_pred             HHHHhccCCH----HHHHHHHHHHHHhccCCC
Q 017249          156 LVQILHSGSV----QGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       156 L~~lL~~~~~----~~~~~a~~~L~~L~~~~~  183 (375)
                      |..+....++    .+...+-..|..+|.++.
T Consensus       209 l~~Ly~~~~~~~~~~~~~~vh~fL~~lcT~p~  240 (330)
T PF11707_consen  209 LASLYSRDGEDEKSSVADLVHEFLLALCTDPK  240 (330)
T ss_pred             HHHHhcccCCcccchHHHHHHHHHHHHhcCCC
Confidence            9997776666    778888888888886543

The protein partners of Npa1p include eight putative helicases as well as the novel Npa2p factor. Npa1p can also associate with a subset of H/ACA and C/D small nucleolar RNPs (snoRNPs) involved in the chemical modification of residues in the vicinity of the peptidyl transferase centre []. The protein has also been referred to as Urb1, and this domain at the N-terminal is one of several conserved regions along the length.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.03  E-value=7.7  Score=40.87  Aligned_cols=254  Identities=16%  Similarity=0.157  Sum_probs=143.4

Q ss_pred             HHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC----
Q 017249           47 RDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ----  122 (375)
Q Consensus        47 ~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~----  122 (375)
                      .+|..+.+++ .++.+.+.++.++..+++++-++  +-+-..++.+..|...++..-    ...-+-.++..|+++    
T Consensus       664 DcLisllKnn-teNqklFreanGvklilpflind--ehRSslLrivscLitvdpkqv----hhqelmalVdtLksgmvt~  736 (2799)
T KOG1788|consen  664 DCLISLLKNN-TENQKLFREANGVKLILPFLIND--EHRSSLLRIVSCLITVDPKQV----HHQELMALVDTLKSGMVTR  736 (2799)
T ss_pred             HHHHHHHhcc-chhhHHHHhhcCceEEEEeeech--HHHHHHHHHHHHHhccCcccc----cHHHHHHHHHHHHhcceec
Confidence            4677788888 89999999999999888888433  445555555555554333311    111133566777663    


Q ss_pred             --------ChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhcc----------CCHHHHHHHHHH---HHHhc-
Q 017249          123 --------NGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHS----------GSVQGRVDAVTA---LHYLS-  179 (375)
Q Consensus       123 --------~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~----------~~~~~~~~a~~~---L~~L~-  179 (375)
                              ..........++|.+... ...+..+.+.++...|...|..          ++..+...-...   +..++ 
T Consensus       737 IsgeqyklhfsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlav  816 (2799)
T KOG1788|consen  737 ISGEQYKLHFSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAV  816 (2799)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHH
Confidence                    133455667788887643 4567778888888888777632          121121122222   22222 


Q ss_pred             -cCCCCchhhhhcCCcHHHHHHhhhcc----------------------cchHH-HH-HHHHHHHHh-----hC------
Q 017249          180 -TCKENSSPILDATAVPPLINLLKDCK----------------------KYSKF-AE-KATALLEIL-----SS------  223 (375)
Q Consensus       180 -~~~~~~~~i~~~g~i~~Lv~ll~~~~----------------------~~~~~-~~-~a~~~L~~l-----~~------  223 (375)
                       .++.|+..+-..=..+.+..+|..+.                      .++.+ .+ .|+.-+-.+     +.      
T Consensus       817 cenasNrmklhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGq  896 (2799)
T KOG1788|consen  817 CENASNRMKLHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQ  896 (2799)
T ss_pred             hhcchhhhheeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCC
Confidence             33344432211111111222221110                      00000 01 111111111     00      


Q ss_pred             ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh---hCCHHHHHHHH
Q 017249          224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERAR  300 (375)
Q Consensus       224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~---~~~~~~~~~A~  300 (375)
                      ....+..+. ..|++..|+..+-...++++..-+..+..++..+ +.+.+.+-..|.++.|++++.   +++.-.--++.
T Consensus       897 fnpdk~~iy-nagavRvlirslLlnypK~qlefl~lleSlaRas-pfnaelltS~gcvellleIiypflsgsspfLshal  974 (2799)
T KOG1788|consen  897 FNPDKQKIY-NAGAVRVLIRSLLLNYPKLQLEFLNLLESLARAS-PFNAELLTSAGCVELLLEIIYPFLSGSSPFLSHAL  974 (2799)
T ss_pred             cCchHhhhc-ccchhHHHHHHHHhhChHHHHHHHHHHHHHhhcC-CCchhhhhcccHHHHHHHHhhhhhcCCchHhhccH
Confidence            112345566 5799999999988888999999999999999887 466677777899999988764   44444445555


Q ss_pred             HHHHHhhcC
Q 017249          301 TLLDLLRDT  309 (375)
Q Consensus       301 ~~L~~l~~~  309 (375)
                      .++..|+-.
T Consensus       975 kIvemLgay  983 (2799)
T KOG1788|consen  975 KIVEMLGAY  983 (2799)
T ss_pred             HHHHHHhhc
Confidence            665555543

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.83  E-value=13  Score=38.69  Aligned_cols=187  Identities=12%  Similarity=0.057  Sum_probs=112.4

Q ss_pred             HHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC--hhhhHHHhh
Q 017249          156 LVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS--EEGRIAITN  233 (375)
Q Consensus       156 L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~--~~~~~~~~~  233 (375)
                      +..-+.+.+..-+..|+.-+................|.+..+++....+. +..+...++.+|..++..  ...+...  
T Consensus       258 l~t~~~s~~WK~R~Eale~l~~~l~e~~~~~~~~~~~ll~~~~ki~~kDa-N~~v~~~aa~~l~~ia~~lr~~~~~~~--  334 (815)
T KOG1820|consen  258 LETEMLSKKWKDRKEALEELVAILEEAKKEIVKGYTGLLGILLKIRLKDA-NINVVMLAAQILELIAKKLRPLFRKYA--  334 (815)
T ss_pred             HHHhhhccchHHHHHHHHHHHHHHhccccccccCcchHHHHHHHHhccCc-chhHHHHHHHHHHHHHHhcchhhHHHH--
Confidence            33334555667777888887776655441111122345555555554432 345667778888888753  2333332  


Q ss_pred             ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhh
Q 017249          234 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEK  313 (375)
Q Consensus       234 ~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~  313 (375)
                       .+..+.++..+.+....++..++.++..++....        -....+.+..++.+++|..+..+...+..+-......
T Consensus       335 -~~v~p~lld~lkekk~~l~d~l~~~~d~~~ns~~--------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~  405 (815)
T KOG1820|consen  335 -KNVFPSLLDRLKEKKSELRDALLKALDAILNSTP--------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPK  405 (815)
T ss_pred             -HhhcchHHHHhhhccHHHHHHHHHHHHHHHhccc--------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCc
Confidence             3688899999998888899988888877765331        1345667778889999999999888777765544322


Q ss_pred             hhhhhhHHHHHHHHhhcC-CChHHHHHHHHHHHHHHHHHHHH
Q 017249          314 RLSSSVLEKIVYDIAARV-DGADKAAETAKRLLQDMVQRSME  354 (375)
Q Consensus       314 ~~~~g~~~~l~~~l~~~~-~g~~~~~~~a~~~l~~l~~~s~~  354 (375)
                      ...-+.+..++..+..+. |.....+..|.+++.-+.+..-+
T Consensus       406 ~~~~~t~~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~Ge  447 (815)
T KOG1820|consen  406 TVEKETVKTLVPHLIKHINDTDKDVRKAALEAVAAVMKVHGE  447 (815)
T ss_pred             CcchhhHHHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHhhH
Confidence            333333333333333333 44456666666655555444333

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.78  E-value=0.87  Score=36.54  Aligned_cols=75  Identities=12%  Similarity=0.169  Sum_probs=64.4

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCC
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .++..|..-|.++++.++..|+.+|-.+..+++......+.+..++..|+.++.. .++.+++....++...+..-
T Consensus        37 ~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~f  112 (144)
T cd03568          37 DCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADEF  112 (144)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHh
Confidence            4566777788889999999999999999999877788888889999999999987 78999999999888776433

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>KOG1788 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.66  E-value=6.1  Score=41.56  Aligned_cols=243  Identities=19%  Similarity=0.121  Sum_probs=136.8

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC------------C
Q 017249           14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP------------N   81 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~------------~   81 (375)
                      ++++...|....++..++.++-  +.+-+..-++++..+.... +...    ...-+-.+|..|+++            .
T Consensus       673 nteNqklFreanGvklilpfli--ndehRSslLrivscLitvd-pkqv----hhqelmalVdtLksgmvt~Isgeqyklh  745 (2799)
T KOG1788|consen  673 NTENQKLFREANGVKLILPFLI--NDEHRSSLLRIVSCLITVD-PKQV----HHQELMALVDTLKSGMVTRISGEQYKLH  745 (2799)
T ss_pred             cchhhHHHHhhcCceEEEEeee--chHHHHHHHHHHHHHhccC-cccc----cHHHHHHHHHHHHhcceeccchhHHHHH
Confidence            4455566666666666666652  3344444555666565554 2210    112245667777663            1


Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC----------CChHHHHHHHHHHHH-----hhccCCChhH
Q 017249           82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF----------QNGTLRELAAAAILT-----LSAAAPNKPA  146 (375)
Q Consensus        82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~----------~~~~~~~~a~~~L~~-----Ls~~~~~~~~  146 (375)
                      .......+.+++.+.+-+...+..+.+++++..|...|-.          ++..+...-...|..     ++.+..|+..
T Consensus       746 fsllcdlmGalwrivgvngsaqrvFgeatGFslLlttLhtfqgftelhdesDlcvyiklfkilFrlfTlavcenasNrmk  825 (2799)
T KOG1788|consen  746 FSLLCDLMGALWRIVGVNGSAQRVFGEATGFSLLLTTLHTFQGFTELHDESDLCVYIKLFKILFRLFTLAVCENASNRMK  825 (2799)
T ss_pred             HHHHHHHHHHHHHHHccCchheeehhccccHHHHHHHHHHhccchhcCCchhhhhHHHHHHHHHHHHHHHHhhcchhhhh
Confidence            2445566677787776677788899999999998887721          111122222222222     2333445433


Q ss_pred             HHhcCChHHHHHHh--------------------------ccCCHHHHHHHHHHHHHhccC-----------CCCchhhh
Q 017249          147 IAASGAAPLLVQIL--------------------------HSGSVQGRVDAVTALHYLSTC-----------KENSSPIL  189 (375)
Q Consensus       147 i~~~~~l~~L~~lL--------------------------~~~~~~~~~~a~~~L~~L~~~-----------~~~~~~i~  189 (375)
                      +-..-..+.+..+|                          ..+....-..||..+..+-.+           ++.++.+.
T Consensus       826 lhtvITsqtftsLLresgllcvnler~viqlllElalevlvppfLtSEsaAcaeVfelednifavntPsGqfnpdk~~iy  905 (2799)
T KOG1788|consen  826 LHTVITSQTFTSLLRESGLLCVNLERHVIQLLLELALEVLVPPFLTSESAACAEVFELEDNIFAVNTPSGQFNPDKQKIY  905 (2799)
T ss_pred             eeeeeeHHHHHHHHHHhccceecchHHHHHHHHHHHHHhhCCchhhhhHHHHHHHhhcccceeeeccCCCCcCchHhhhc
Confidence            22111112222222                          222222233444444444211           23566788


Q ss_pred             hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhc---cCChHHHHHHHHHHHHhcc
Q 017249          190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVE---DGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~---~~~~~~~~~a~~~L~~l~~  265 (375)
                      ..|+++.+++.+-..  .++++..-+..+..++. ++.+..-.. ..|++..|++++.   +++...-.++..++..++.
T Consensus       906 nagavRvlirslLln--ypK~qlefl~lleSlaRaspfnaellt-S~gcvellleIiypflsgsspfLshalkIvemLga  982 (2799)
T KOG1788|consen  906 NAGAVRVLIRSLLLN--YPKLQLEFLNLLESLARASPFNAELLT-SAGCVELLLEIIYPFLSGSSPFLSHALKIVEMLGA  982 (2799)
T ss_pred             ccchhHHHHHHHHhh--ChHHHHHHHHHHHHHhhcCCCchhhhh-cccHHHHHHHHhhhhhcCCchHhhccHHHHHHHhh
Confidence            899999999887765  44667777888888876 555555555 6799999888763   4566666777777776665


Q ss_pred             c
Q 017249          266 S  266 (375)
Q Consensus       266 ~  266 (375)
                      .
T Consensus       983 y  983 (2799)
T KOG1788|consen  983 Y  983 (2799)
T ss_pred             c
Confidence            3

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=91.59  E-value=1.5  Score=35.13  Aligned_cols=74  Identities=12%  Similarity=0.073  Sum_probs=63.0

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcC
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~  309 (375)
                      .++..|-.-|.++++.++..|+.+|-.+..+++......+.+.+++..|+.++. ..++.+++.+..++..-+..
T Consensus        41 ~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  115 (142)
T cd03569          41 YAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWALA  115 (142)
T ss_pred             HHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHH
Confidence            466778888888999999999999999999876677888888999999999887 56789999999988877643

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>KOG0915 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.52  E-value=25  Score=38.68  Aligned_cols=334  Identities=14%  Similarity=0.098  Sum_probs=168.7

Q ss_pred             HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249           20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSPNLDAIESSLLALLNLA   96 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~   96 (375)
                      .+..-+.+-+++.+-+ +..+..+.=|+.-+..++...    ++.+..  ...||.|..+-.+++..++.....+=..|.
T Consensus       951 dl~qPdLVYKFM~LAnh~A~wnSk~GaAfGf~~i~~~a----~~kl~p~l~kLIPrLyRY~yDP~~~Vq~aM~sIW~~Li 1026 (1702)
T KOG0915|consen  951 DLGQPDLVYKFMQLANHNATWNSKKGAAFGFGAIAKQA----GEKLEPYLKKLIPRLYRYQYDPDKKVQDAMTSIWNALI 1026 (1702)
T ss_pred             hcCChHHHHHHHHHhhhhchhhcccchhhchHHHHHHH----HHhhhhHHHHhhHHHhhhccCCcHHHHHHHHHHHHHhc
Confidence            3344455555665554 456777777877777777554    222221  145778888888899998877776666666


Q ss_pred             ccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHH---HH
Q 017249           97 VRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVD---AV  172 (375)
Q Consensus        97 ~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~---a~  172 (375)
                      .++. .-..-+-..++.-|+.-|.+..=.+|+.++-+|..|....+.-...- -...+..+.+.+++=...++..   ++
T Consensus      1027 ~D~k-~~vd~y~neIl~eLL~~lt~kewRVReasclAL~dLl~g~~~~~~~e~lpelw~~~fRvmDDIKEsVR~aa~~~~ 1105 (1702)
T KOG0915|consen 1027 TDSK-KVVDEYLNEILDELLVNLTSKEWRVREASCLALADLLQGRPFDQVKEKLPELWEAAFRVMDDIKESVREAADKAA 1105 (1702)
T ss_pred             cChH-HHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6432 33333334566777777788888899999999999988766433321 2345555566655544445544   45


Q ss_pred             HHHHHhccC--C-CC--chhhhhcCCcHHHHH--HhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh
Q 017249          173 TALHYLSTC--K-EN--SSPILDATAVPPLIN--LLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV  245 (375)
Q Consensus       173 ~~L~~L~~~--~-~~--~~~i~~~g~i~~Lv~--ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL  245 (375)
                      .+|..|+..  + .+  +..-.-..++|.|+.  ++   +....++..++..+..|+.+....-.-. -...++.|+...
T Consensus      1106 ~~lsKl~vr~~d~~~~~~~~~~l~~iLPfLl~~gim---s~v~evr~~si~tl~dl~Kssg~~lkP~-~~~LIp~ll~~~ 1181 (1702)
T KOG0915|consen 1106 RALSKLCVRICDVTNGAKGKEALDIILPFLLDEGIM---SKVNEVRRFSIGTLMDLAKSSGKELKPH-FPKLIPLLLNAY 1181 (1702)
T ss_pred             HHHHHHHhhhcccCCcccHHHHHHHHHHHHhccCcc---cchHHHHHHHHHHHHHHHHhchhhhcch-hhHHHHHHHHHc
Confidence            555555522  1 11  111111224444432  12   1234677778888888876533211111 123455555554


Q ss_pred             ccCCh-----------HHHHHHHHHHHH-hcccCc-HHHHHHHHH-------cCChHHHHHHhhhC-CHHHHHHHHHHHH
Q 017249          246 EDGSL-----------VSTQHAVGALLS-LCQSCR-DKYRQLILK-------EGAIPGLLRLTVEG-TFEAQERARTLLD  304 (375)
Q Consensus       246 ~~~~~-----------~~~~~a~~~L~~-l~~~~~-~~~~~~l~~-------~g~v~~L~~ll~~~-~~~~~~~A~~~L~  304 (375)
                      ..-++           ....+|+..++. .+.+++ -+.....+.       ...+|.+.++++++ .-.++-.++..+.
T Consensus      1182 s~lE~~vLnYls~r~~~~e~ealDt~R~s~aksspmmeTi~~ci~~iD~~vLeelip~l~el~R~sVgl~Tkvg~A~fI~ 1261 (1702)
T KOG0915|consen 1182 SELEPQVLNYLSLRLINIETEALDTLRASAAKSSPMMETINKCINYIDISVLEELIPRLTELVRGSVGLGTKVGCASFIS 1261 (1702)
T ss_pred             cccchHHHHHHHHhhhhhHHHHHHHHHHhhhcCCcHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccCCCCcchhHHHHHH
Confidence            43222           222333333332 122221 011111111       23556666666543 2333444444444


Q ss_pred             HhhcCChhhh--hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 017249          305 LLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQQRAA  365 (375)
Q Consensus       305 ~l~~~~~~~~--~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~~~~~~  365 (375)
                      .|...-..++  ..--.+.+++..+   .|-.+-++..-+.++..+.+.+-+..+...++.-+
T Consensus      1262 ~L~~r~~~emtP~sgKll~al~~g~---~dRNesv~kafAsAmG~L~k~Ss~dq~qKLie~~l 1321 (1702)
T KOG0915|consen 1262 LLVQRLGSEMTPYSGKLLRALFPGA---KDRNESVRKAFASAMGYLAKFSSPDQMQKLIETLL 1321 (1702)
T ss_pred             HHHHHhccccCcchhHHHHHHhhcc---ccccHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            4432211100  1111333333322   23334445555556777777766666666655544

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=91.48  E-value=1.6  Score=39.12  Aligned_cols=144  Identities=19%  Similarity=0.122  Sum_probs=82.9

Q ss_pred             HHHHHHHHHHhccCCCCchhhhhcC--CcHHHHHHhhhcc--cchHHHHHHHHHHHHhhCChhhhHHHhhccC-cHHHHH
Q 017249          168 RVDAVTALHYLSTCKENSSPILDAT--AVPPLINLLKDCK--KYSKFAEKATALLEILSSSEEGRIAITNSDG-GILTLV  242 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~~~~~~i~~~g--~i~~Lv~ll~~~~--~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g-~v~~Lv  242 (375)
                      +-.++..++-+..++.....+...+  ....+..++....  ........++++++|+-.++.++..+....+ .+...+
T Consensus        80 ~fP~lDLlRl~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~~~~~~~~~~~~i~~~~  159 (268)
T PF08324_consen   80 RFPALDLLRLAALHPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPGRQLLLSHFDSSILELL  159 (268)
T ss_dssp             -HHHHHHHHHHCCCHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCCHHHHHCTHHTCHHHHC
T ss_pred             chhHHhHHHHHHhCccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCccHHHHHhcccchHHHHH
Confidence            3444444444444433333332221  2344444444332  3445677799999999999999998885444 344444


Q ss_pred             HHhccC----ChHHHHHHHHHHHHhcccCcHHHH-HHHHHcCChHHHHHHhh--hCCHHHHHHHHHHHHHhhcCChh
Q 017249          243 ETVEDG----SLVSTQHAVGALLSLCQSCRDKYR-QLILKEGAIPGLLRLTV--EGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       243 ~lL~~~----~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~g~v~~L~~ll~--~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ..+...    +..++..++..+.|++.... ..+ ..=.....+..+.+.+.  ..++++...+..+|.++......
T Consensus       160 ~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~-~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~LvAlGtL~~~~~~  235 (268)
T PF08324_consen  160 SSLLSSLLDSNKNVRIALATLLLNLSVLLH-KNRSDEEWQSELLSSIIEVLSREESDEEALYRLLVALGTLLSSSDS  235 (268)
T ss_dssp             HCCCTTS-HHHHHHHHHHHHHHHHHHHHHH-HCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHHHHHHHHHCCSHH
T ss_pred             HHHhhccccccHHHHHHHHHHHHHHHHHHH-hcCCChHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHHhccChh
Confidence            333333    67788888889999876421 100 00011123445555332  36899999999999999966643

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>KOG2956 consensus CLIP-associating protein [General function prediction only]

Probab=91.29  E-value=9.4  Score=36.47  Aligned_cols=150  Identities=16%  Similarity=0.113  Sum_probs=94.5

Q ss_pred             HHHHhhHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHH-HHH
Q 017249           18 AWNQRKQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLL-ALL   93 (375)
Q Consensus        18 ~~~~~~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~-~L~   93 (375)
                      .|...-...+..+++-|.. .+...+..|++.|..++... +   .++.+.  =++..+++.-.+.+.++...|.. ++.
T Consensus       322 vWeq~f~~iL~~l~EvL~d~~~~~~k~laLrvL~~ml~~Q-~---~~l~DstE~ai~K~Leaa~ds~~~v~~~Aeed~~~  397 (516)
T KOG2956|consen  322 VWEQHFAEILLLLLEVLSDSEDEIIKKLALRVLREMLTNQ-P---ARLFDSTEIAICKVLEAAKDSQDEVMRVAEEDCLT  397 (516)
T ss_pred             HHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHhc-h---HhhhchHHHHHHHHHHHHhCCchhHHHHHHHHHHH
Confidence            3344444556667777774 67888999999999999776 2   222222  24556666666666555554444 455


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHHhccCCHHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQILHSGSVQGRVDAV  172 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~lL~~~~~~~~~~a~  172 (375)
                      .++...|..+        |..+..++-..+...-..++..+..+...-..-... .-....|.+++...+.+..++..|.
T Consensus       398 ~las~~P~~~--------I~~i~~~Ilt~D~~~~~~~iKm~Tkl~e~l~~EeL~~ll~diaP~~iqay~S~SS~VRKtaV  469 (516)
T KOG2956|consen  398 TLASHLPLQC--------IVNISPLILTADEPRAVAVIKMLTKLFERLSAEELLNLLPDIAPCVIQAYDSTSSTVRKTAV  469 (516)
T ss_pred             HHHhhCchhH--------HHHHhhHHhcCcchHHHHHHHHHHHHHhhcCHHHHHHhhhhhhhHHHHHhcCchHHhhhhHH
Confidence            5665555433        223444444455555556666777776543322222 2467889999999999999999999


Q ss_pred             HHHHHhc
Q 017249          173 TALHYLS  179 (375)
Q Consensus       173 ~~L~~L~  179 (375)
                      .||..+-
T Consensus       470 fCLVamv  476 (516)
T KOG2956|consen  470 FCLVAMV  476 (516)
T ss_pred             HhHHHHH
Confidence            9988764

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=91.29  E-value=4.4  Score=40.49  Aligned_cols=252  Identities=15%  Similarity=0.116  Sum_probs=150.5

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249           32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAVRNERNKVKIATA  109 (375)
Q Consensus        32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~~~~~~r~~i~~~  109 (375)
                      ..++..+.+.+..-...|.+...    ..-+.++..-+++.|+..+.-++  .++....+..-.-+..  ++     +..
T Consensus       261 eel~lks~~eK~~Ff~~L~~~l~----~~pe~i~~~kvlp~Ll~~~~~g~a~~~~ltpl~k~~k~ld~--~e-----yq~  329 (690)
T KOG1243|consen  261 EELRLKSVEEKQKFFSGLIDRLD----NFPEEIIASKVLPILLAALEFGDAASDFLTPLFKLGKDLDE--EE-----YQV  329 (690)
T ss_pred             HhcccCcHHHHHHHHHHHHHHHh----hhhHHHHHHHHHHHHHHHhhccccchhhhhHHHHhhhhccc--cc-----ccc
Confidence            33345566666665555555222    22333444556777777776554  3333333332222222  22     677


Q ss_pred             CChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249          110 GAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  188 (375)
Q Consensus       110 g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  188 (375)
                      +++|.|++++++.+..+|..-   |.++-...+ --..+....++|.+..-+.+.++.++...+.++..|+..=..+  .
T Consensus       330 ~i~p~l~kLF~~~Dr~iR~~L---L~~i~~~i~~Lt~~~~~d~I~phv~~G~~DTn~~Lre~Tlksm~~La~kL~~~--~  404 (690)
T KOG1243|consen  330 RIIPVLLKLFKSPDRQIRLLL---LQYIEKYIDHLTKQILNDQIFPHVALGFLDTNATLREQTLKSMAVLAPKLSKR--N  404 (690)
T ss_pred             chhhhHHHHhcCcchHHHHHH---HHhHHHHhhhcCHHhhcchhHHHHHhhcccCCHHHHHHHHHHHHHHHhhhchh--h
Confidence            889999999999999888544   444433322 3345567788999999999999999999999988887431111  1


Q ss_pred             hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc
Q 017249          189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR  268 (375)
Q Consensus       189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~  268 (375)
                      ++...+..+-++-.  +++..++-+..-+|..++..-....   +..-.+.....-++++-...|..++..++..+..-.
T Consensus       405 Ln~Ellr~~ar~q~--d~~~~irtntticlgki~~~l~~~~---R~~vL~~aftralkdpf~paR~a~v~~l~at~~~~~  479 (690)
T KOG1243|consen  405 LNGELLRYLARLQP--DEHGGIRTNTTICLGKIAPHLAASV---RKRVLASAFTRALKDPFVPARKAGVLALAATQEYFD  479 (690)
T ss_pred             hcHHHHHHHHhhCc--cccCcccccceeeecccccccchhh---hccccchhhhhhhcCCCCCchhhhhHHHhhcccccc
Confidence            22223444444433  2233455555555666654422111   122223344446677667788888888887665431


Q ss_pred             HHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          269 DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       269 ~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      .    .=+...++|.++-+.-+.+..++..|-.++..+-.
T Consensus       480 ~----~~va~kIlp~l~pl~vd~e~~vr~~a~~~i~~fl~  515 (690)
T KOG1243|consen  480 Q----SEVANKILPSLVPLTVDPEKTVRDTAEKAIRQFLE  515 (690)
T ss_pred             h----hhhhhhccccccccccCcccchhhHHHHHHHHHHh
Confidence            1    12456788888888888888888888887766543

>KOG2611 consensus Neurochondrin/leucine-rich protein (Neurochondrin) [Function unknown]

Probab=91.28  E-value=14  Score=35.44  Aligned_cols=188  Identities=16%  Similarity=0.142  Sum_probs=119.1

Q ss_pred             HHHHhhcCCChHHHHHHHHHHHHhhccCC----ChhHHHhcCChHHHHHHhccCC-------HHHHHHHHHHHHHhccCC
Q 017249          114 PLVELLKFQNGTLRELAAAAILTLSAAAP----NKPAIAASGAAPLLVQILHSGS-------VQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       114 ~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~~~i~~~~~l~~L~~lL~~~~-------~~~~~~a~~~L~~L~~~~  182 (375)
                      .+..+++..+++-+..|+-....+..+++    ++..+.+.-+.+.+-++|.+.+       .-.+.-++..|...|..+
T Consensus        15 ~~~~L~~~k~D~e~fAaLllVTK~vK~~Di~a~~kk~vfeAVGf~Fl~rLl~tk~~p~dcpd~Vy~~i~itvLacFC~~p   94 (698)
T KOG2611|consen   15 DCLKLLKGKRDEERFAALLLVTKFVKNDDIVALNKKLVFEAVGFHFLDRLLRTKSGPGDCPDDVYLQISITVLACFCRVP   94 (698)
T ss_pred             hHHHHhcccChHHHHHHHHHHHHHhcccchhhhhhhhHHHHhccchHHHHhhcCCCCCCCcHHHHHHHHHHHHHHHhCCh
Confidence            35566666677778888888888888765    4666777777888888886542       223555666677777776


Q ss_pred             CC--chhhhhcCCcHHHHHHhhhcccch-----HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHH
Q 017249          183 EN--SSPILDATAVPPLINLLKDCKKYS-----KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQ  254 (375)
Q Consensus       183 ~~--~~~i~~~g~i~~Lv~ll~~~~~~~-----~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~  254 (375)
                      +.  ...++  +.||.|..++....+..     .+.+.+-.+|..++..+.+...++ ..|+++.+.++-.-++ ..-..
T Consensus        95 ElAsh~~~v--~~IP~llev~~~~~d~d~e~~~~m~~d~Y~cL~~Va~~e~G~~~Li-a~G~~~~~~Q~y~~~~~~~d~a  171 (698)
T KOG2611|consen   95 ELASHEEMV--SRIPLLLEVMSKGIDTDYEDNLIMLEDCYECLYLVATAEAGLMTLI-ASGGLRVIAQMYELPDGSHDMA  171 (698)
T ss_pred             hhccCHHHH--HhhhHHHHHHHhcCCCchhhhHHHHHHHHHHHHHHhcCCchhHHHH-hcCchHHHHHHHhCCCCchhHH
Confidence            53  33444  37899999987653221     366778899999999999999999 5899999987754322 33334


Q ss_pred             HHHHHHHHhcccCc--HHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          255 HAVGALLSLCQSCR--DKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       255 ~a~~~L~~l~~~~~--~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                      .++.++.-....-.  ++....+..  .+..+-.=+...+...+...+.+|..+
T Consensus       172 lal~Vlll~~~~~~cw~e~~~~fla--li~~va~df~~~~~a~KfElc~lL~~v  223 (698)
T KOG2611|consen  172 LALKVLLLLVSKLDCWSETIERFLA--LIAAVARDFAVLHNALKFELCHLLSAV  223 (698)
T ss_pred             HHHHHHHHHHHhcccCcCCHHHHHH--HHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            55555544433210  011111111  133333333345567778888888844

>KOG1820 consensus Microtubule-associated protein [Cytoskeleton]

Probab=91.28  E-value=4  Score=42.25  Aligned_cols=193  Identities=13%  Similarity=0.123  Sum_probs=114.4

Q ss_pred             cCCChHHHHHHHHHHHHhhccCCChhHH-HhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHH
Q 017249          120 KFQNGTLRELAAAAILTLSAAAPNKPAI-AASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPL  197 (375)
Q Consensus       120 ~~~~~~~~~~a~~~L~~Ls~~~~~~~~i-~~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~L  197 (375)
                      .+.+-.-|..|+.-++....... .... ...+.+-.+++. +.+.|..+...++.+|..++..-..-..=...++++.+
T Consensus       263 ~s~~WK~R~Eale~l~~~l~e~~-~~~~~~~~~ll~~~~ki~~kDaN~~v~~~aa~~l~~ia~~lr~~~~~~~~~v~p~l  341 (815)
T KOG1820|consen  263 LSKKWKDRKEALEELVAILEEAK-KEIVKGYTGLLGILLKIRLKDANINVVMLAAQILELIAKKLRPLFRKYAKNVFPSL  341 (815)
T ss_pred             hccchHHHHHHHHHHHHHHhccc-cccccCcchHHHHHHHHhccCcchhHHHHHHHHHHHHHHhcchhhHHHHHhhcchH
Confidence            34444556667776666655444 1111 122333334443 34557778888888888887542221222234577777


Q ss_pred             HHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 017249          198 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  277 (375)
Q Consensus       198 v~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~  277 (375)
                      +.-+.+.  ...+++.+..++-.++....       -....+.++.++.++++..+..+...+.......++.....-.-
T Consensus       342 ld~lkek--k~~l~d~l~~~~d~~~ns~~-------l~~~~~~I~e~lk~knp~~k~~~~~~l~r~~~~~~~~~~~~~t~  412 (815)
T KOG1820|consen  342 LDRLKEK--KSELRDALLKALDAILNSTP-------LSKMSEAILEALKGKNPQIKGECLLLLDRKLRKLGPKTVEKETV  412 (815)
T ss_pred             HHHhhhc--cHHHHHHHHHHHHHHHhccc-------HHHHHHHHHHHhcCCChhhHHHHHHHHHHHHhhcCCcCcchhhH
Confidence            7777664  33556666666654443110       23456677788999999999887777766555432211112222


Q ss_pred             cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHH
Q 017249          278 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDI  327 (375)
Q Consensus       278 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l  327 (375)
                      .+.++.++....+.+..||+.|..++..+-+..     ..+++..++..+
T Consensus       413 ~~l~p~~~~~~~D~~~~VR~Aa~e~~~~v~k~~-----Ge~~~~k~L~~~  457 (815)
T KOG1820|consen  413 KTLVPHLIKHINDTDKDVRKAALEAVAAVMKVH-----GEEVFKKLLKDL  457 (815)
T ss_pred             HHHhHHHhhhccCCcHHHHHHHHHHHHHHHHHh-----hHHHHHHHHHhh
Confidence            567888888888999999999999777664432     344555555444

>cd03568 VHS_STAM VHS domain family, STAM subfamily; members include STAM (Signal Transducing Adaptor Molecule), EAST (EGFR-associated protein with SH3 and TAM domains) and Hbp (Hrs-binding protein)

Probab=91.11  E-value=1.9  Score=34.52  Aligned_cols=76  Identities=12%  Similarity=0.101  Sum_probs=64.5

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~   98 (375)
                      ..+.+..|.+.|.+.++.++..|+..|-.+..+.-......+.+..++..|+.++.. .+..++...+..+...+..
T Consensus        35 ~k~a~ral~KRl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evask~Fl~eL~kl~~~~~~~~Vk~kil~li~~W~~~  111 (144)
T cd03568          35 AKDCLKAIMKRLNHKDPNVQLRALTLLDACAENCGKRFHQEVASRDFTQELKKLINDRVHPTVKEKLREVVKQWADE  111 (144)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHH
Confidence            356788888899999999999999999999988834456667777999999999988 7899999999999988753

Collectively, they are referred to as STAM. All STAMs have at their N-termini a VHS domain, which is involved in cytokine-mediated intracellular signal transduction and has a superhelical structure similar to the structure of ARM (Armadillo) repeats, followed by a SH3 (Src homology 3) domain, a well-established protein-protein interaction domain. At the C-termini of most vertebrate STAMS, an ITAM (Immunoreceptor Tyrosine-based Activation) motif is present, which mediates the binding of HRS (hepatocyte growth factor-regulated tyrosine kinase substrate) in endocytic and exocytic machineries.

>PF11864 DUF3384: Domain of unknown function (DUF3384); InterPro: IPR024584 This entry represents the N-terminal domain of tuberin which is functionally uncharacterised

Probab=91.02  E-value=12  Score=36.42  Aligned_cols=108  Identities=17%  Similarity=0.118  Sum_probs=64.0

Q ss_pred             CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc------CChHHHHHHHHHHHHhccc
Q 017249          193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED------GSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~  266 (375)
                      .++.++.+|.+--....+...+..++.||+.++.+..       .+..|..+|.+      .+..+...|+..+..+..+
T Consensus       214 sl~~~i~vLCsi~~~~~l~~~~w~~m~nL~~S~~g~~-------~i~~L~~iL~~~~~~~~~~~~~lRGAv~~l~~ll~~  286 (464)
T PF11864_consen  214 SLSPCIEVLCSIVNSVSLCKPSWRTMRNLLKSHLGHS-------AIRTLCDILRSPDPQNKRDINVLRGAVFFLRMLLWG  286 (464)
T ss_pred             HHHHHHHHHhhHhcccccchhHHHHHHHHHcCccHHH-------HHHHHHHHHcccCccccccHHHHhhHHHHHHHHHhc
Confidence            3445555555432223566778889999997665433       44567777732      2344455788888777665


Q ss_pred             CcHHHHHHHHHcC--ChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          267 CRDKYRQLILKEG--AIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       267 ~~~~~~~~l~~~g--~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      .+++....+--.-  +++.+...++.+++.+-.....++..+-
T Consensus       287 ~~~~~~~~l~~~~~~vl~sl~~al~~~~~~v~~eIl~~i~~ll  329 (464)
T PF11864_consen  287 SGEQGYPSLPFSPSSVLPSLLNALKSNSPRVDYEILLLINRLL  329 (464)
T ss_pred             cccCCcceecccHHHHHHHHHHHHhCCCCeehHHHHHHHHHHH
Confidence            5222222221122  7788888888777777766666555554

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=90.76  E-value=17  Score=36.87  Aligned_cols=158  Identities=18%  Similarity=0.111  Sum_probs=95.2

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhh
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILD  190 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~  190 (375)
                      =+.+-+++.+.+|-+|.....++..- ....     ...++|..|++. ..+.|..+++.|.-+|.-++..+.       
T Consensus       521 d~lI~el~~dkdpilR~~Gm~t~alA-y~GT-----gnnkair~lLh~aVsD~nDDVrRaAVialGFVl~~dp-------  587 (929)
T KOG2062|consen  521 DPLIKELLRDKDPILRYGGMYTLALA-YVGT-----GNNKAIRRLLHVAVSDVNDDVRRAAVIALGFVLFRDP-------  587 (929)
T ss_pred             HHHHHHHhcCCchhhhhhhHHHHHHH-Hhcc-----CchhhHHHhhcccccccchHHHHHHHHHheeeEecCh-------
Confidence            34444556666777776665544332 1111     123566777777 567789999999999987764422       


Q ss_pred             cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHH
Q 017249          191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDK  270 (375)
Q Consensus       191 ~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~  270 (375)
                       ...+..|.+|..+- ++.++-.+.-+|+..|...-++.       ++..|-++..+...-+|+.|+.+++.+.....++
T Consensus       588 -~~~~s~V~lLses~-N~HVRyGaA~ALGIaCAGtG~~e-------Ai~lLepl~~D~~~fVRQgAlIa~amIm~Q~t~~  658 (929)
T KOG2062|consen  588 -EQLPSTVSLLSESY-NPHVRYGAAMALGIACAGTGLKE-------AINLLEPLTSDPVDFVRQGALIALAMIMIQQTEQ  658 (929)
T ss_pred             -hhchHHHHHHhhhc-ChhhhhhHHHHHhhhhcCCCcHH-------HHHHHhhhhcChHHHHHHHHHHHHHHHHHhcccc
Confidence             24556677777653 55677767777776665543332       3344445566777889999998888775543332


Q ss_pred             HHHHHHHcCChHHHHHHhhhCCH
Q 017249          271 YRQLILKEGAIPGLLRLTVEGTF  293 (375)
Q Consensus       271 ~~~~l~~~g~v~~L~~ll~~~~~  293 (375)
                      ....+  .++...+.+++.+.+.
T Consensus       659 ~~pkv--~~frk~l~kvI~dKhE  679 (929)
T KOG2062|consen  659 LCPKV--NGFRKQLEKVINDKHE  679 (929)
T ss_pred             cCchH--HHHHHHHHHHhhhhhh
Confidence            22221  3455666666665543

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=90.70  E-value=1.4  Score=35.11  Aligned_cols=73  Identities=12%  Similarity=0.135  Sum_probs=62.0

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD  308 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~  308 (375)
                      .++..|..-|.++++.++..|+.+|-.+..+++......+.+.+++..|++++..      .++.|++....++..-+.
T Consensus        38 ~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          38 LAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3567788888899999999999999999998877788888889999999998853      468999999998877654

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>PF07814 WAPL: Wings apart-like protein regulation of heterochromatin; InterPro: IPR022771 This entry contains sequences expressed in eukaryotic organisms (metazoa, fungi, plants) bearing high similarity to the WAPL conserved region of D

Probab=90.42  E-value=16  Score=34.38  Aligned_cols=91  Identities=24%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             hHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHH-HHHHHHhhccCCChhH
Q 017249           70 VQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELA-AAAILTLSAAAPNKPA  146 (375)
Q Consensus        70 v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a-~~~L~~Ls~~~~~~~~  146 (375)
                      +..+++-+.+ ....+|..++-.|..-+. +++.|..+...|.++.+++.+... +......+ +.++.-++.+...-..
T Consensus        23 v~ylld~l~~~~~~s~Rr~sll~La~K~~-~~~Fr~~~ra~g~~~~l~~~l~~~~~d~~~~l~~a~i~~~l~~d~~~~~l  101 (361)
T PF07814_consen   23 VEYLLDGLESSSSSSVRRSSLLELASKCA-DPQFRRQFRAHGLVKRLFKALSDAPDDDILALATAAILYVLSRDGLNMHL  101 (361)
T ss_pred             HHHHHhhcccCCCccHHHHHHHHHHHHhC-CHHHHHHHHHcCcHHHHHHHhccccchHHHHHHHHHHHHHHccCCcchhh
Confidence            6667777763 346788888888888888 789999999999999999999544 33243334 4444445555445555


Q ss_pred             HHhcCChHHHHHHhc
Q 017249          147 IAASGAAPLLVQILH  161 (375)
Q Consensus       147 i~~~~~l~~L~~lL~  161 (375)
                      +.....+..++.++.
T Consensus       102 ~~~~~~~~ll~~Ll~  116 (361)
T PF07814_consen  102 LLDRDSLRLLLKLLK  116 (361)
T ss_pred             hhchhHHHHHHHHhc
Confidence            556677777788877

melanogaster wings apart-like protein. This protein is involved in the regulation of heterochromatin structure []. hWAPL (Q7Z5K2 from SWISSPROT), the human homologue, is found to play a role in the development of cervical carcinogenesis, and is thought to have similar functions to Drosophila wapl protein []. Malfunction of the hWAPL pathway is thought to activate an apoptotic pathway that consequently leads to cell death []. This entry includes proteins from metazoa, fungi and plants.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=90.35  E-value=4.5  Score=40.98  Aligned_cols=132  Identities=20%  Similarity=0.175  Sum_probs=78.3

Q ss_pred             hHHHHHhhCCC----CHHHHHHHHHHHHHhhccChhhH---------HHHHHcCChHHHHHhhc----CCChHHHHHHHH
Q 017249           70 VQPLVLMLVSP----NLDAIESSLLALLNLAVRNERNK---------VKIATAGAIPPLVELLK----FQNGTLRELAAA  132 (375)
Q Consensus        70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~~~~~r---------~~i~~~g~i~~Lv~lL~----~~~~~~~~~a~~  132 (375)
                      +..+.+++.++    ++.++..|+.+++.+....-...         ...+....++.|...+.    ..+.+-+..++.
T Consensus       433 l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~Lk  512 (618)
T PF01347_consen  433 LKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRGDEEEKIVYLK  512 (618)
T ss_dssp             HHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             HHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhccCHHHHHHHHH
Confidence            45555666543    45677777777777775311111         12223345667776665    345677788899


Q ss_pred             HHHHhhccCCChhHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchH
Q 017249          133 AILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK  209 (375)
Q Consensus       133 ~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~  209 (375)
                      +|.|+-          ....++.|...+...   +..++..|+++|..++...       ...+.+.+..++.+...+..
T Consensus       513 aLgN~g----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~-------~~~v~~~l~~I~~n~~e~~E  575 (618)
T PF01347_consen  513 ALGNLG----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHC-------PEKVREILLPIFMNTTEDPE  575 (618)
T ss_dssp             HHHHHT-----------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT--------HHHHHHHHHHHHH-TTS-HH
T ss_pred             HhhccC----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcC-------cHHHHHHHHHHhcCCCCChh
Confidence            999983          346788888888776   5677888888888774331       11244567778877666667


Q ss_pred             HHHHHHHHH
Q 017249          210 FAEKATALL  218 (375)
Q Consensus       210 ~~~~a~~~L  218 (375)
                      ++-+|..+|
T Consensus       576 vRiaA~~~l  584 (618)
T PF01347_consen  576 VRIAAYLIL  584 (618)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776555443

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG2025 consensus Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=90.29  E-value=22  Score=35.92  Aligned_cols=116  Identities=17%  Similarity=0.117  Sum_probs=80.6

Q ss_pred             cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249          109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  188 (375)
Q Consensus       109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  188 (375)
                      .|.+..|++-.++++..+|...+..|..++......+--+-.+....+...+.+..+.++..|..+|..+-..+.+-   
T Consensus        84 ~~~f~hlLRg~Eskdk~VRfrvlqila~l~d~~~eidd~vfn~l~e~l~~Rl~Drep~VRiqAv~aLsrlQ~d~~de---  160 (892)
T KOG2025|consen   84 AGTFYHLLRGTESKDKKVRFRVLQILALLSDENAEIDDDVFNKLNEKLLIRLKDREPNVRIQAVLALSRLQGDPKDE---  160 (892)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHhccccccCHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHhcCCCCC---
Confidence            45566777777888999999999999998774333333334566777888888899999999999999987543211   


Q ss_pred             hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249          189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  232 (375)
Q Consensus       189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  232 (375)
                       +..++..++.+++.++ ++.++.+   +|.|++.++.....++
T Consensus       161 -e~~v~n~l~~liqnDp-S~EVRRa---aLsnI~vdnsTlp~Iv  199 (892)
T KOG2025|consen  161 -ECPVVNLLKDLIQNDP-SDEVRRA---ALSNISVDNSTLPCIV  199 (892)
T ss_pred             -cccHHHHHHHHHhcCC-cHHHHHH---HHHhhccCcccchhHH
Confidence             1134556777787754 5567764   4567777665555544

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=89.99  E-value=1.9  Score=34.05  Aligned_cols=75  Identities=12%  Similarity=0.152  Sum_probs=61.8

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh---CCHHHHHHHHHHHHHhhcCC
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE---GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~---~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .++..|-..|.++++.++..|+.+|-.+..+++......+.....+..|+.++..   .++.+++.+..++......-
T Consensus        37 ~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~f  114 (133)
T cd03561          37 EAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSESF  114 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHHh
Confidence            3566777888899999999999999999998876677777777888889998874   57899999999888776543

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.92  E-value=2.6  Score=34.69  Aligned_cols=108  Identities=19%  Similarity=0.120  Sum_probs=71.7

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChh
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKP  145 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~  145 (375)
                      .+..+.++|+++++..++.++..+...+..++  .+.+.+.  ..+..|+.+|+++ ++.+.+.++.+|..+...-..++
T Consensus        26 l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~~--~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~~~p  103 (165)
T PF08167_consen   26 LVTRINSLLQSKSAYSRWAGLCLLKVTVEQCS--WEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIRGKP  103 (165)
T ss_pred             HHHHHHHHhCCCChhhHHHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            35567889999999999999998888876431  4555553  3578899999887 56678888888888765533322


Q ss_pred             ----HHHh---cCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          146 ----AIAA---SGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       146 ----~i~~---~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                          .+..   .+.++.++++++.  ......++.+|..|-.
T Consensus       104 ~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~  143 (165)
T PF08167_consen  104 TLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLP  143 (165)
T ss_pred             chHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHH
Confidence                2221   2345555555554  3455666666666653

>cd03567 VHS_GGA VHS domain family, GGA subfamily; GGA (Golgi-localized, Gamma-ear-containing, Arf-binding) comprise a subfamily of ubiquitously expressed, monomeric, motif-binding cargo/clathrin adaptor proteins

Probab=89.91  E-value=3  Score=33.21  Aligned_cols=75  Identities=12%  Similarity=0.149  Sum_probs=62.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~   97 (375)
                      .+++..+...|+++++.++..|+..|-.+..+.-+.....+.+.+++..|+++++.      .+..++...+..+...+.
T Consensus        37 k~a~rai~krl~~~n~~v~l~AL~LLe~~vkNCG~~fh~evas~~Fl~el~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (139)
T cd03567          37 QLAVRLLAHKIQSPQEKEALQALTVLEACMKNCGERFHSEVGKFRFLNELIKLVSPKYLGSRTSEKVKTKIIELLYSWTL  116 (139)
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHHhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            46788888999999999999999999999887634566677778999999999963      468999999999888875


Q ss_pred             c
Q 017249           98 R   98 (375)
Q Consensus        98 ~   98 (375)
                      .
T Consensus       117 ~  117 (139)
T cd03567         117 E  117 (139)
T ss_pred             H
Confidence            3

The VHS domain has a superhelical structure similar to the structure of the ARM (Armadillo) repeats and is present at the N-termini of proteins. GGA proteins have a multidomain structure consisting of an N-terminal VHS domain linked by a short proline-rich linker to a GAT (GGA and TOM) domain, which is followed by a long flexible linker to the C-terminal appendage, GAE (gamma-adaptin ear) domain. The VHS domain of GGA proteins binds to the acidic-cluster dileucine (DxxLL) motif found on the cytoplasmic tails of cargo proteins trafficked between the trans-Golgi network and the endosomal system.

>cd03569 VHS_Hrs_Vps27p VHS domain family, Hrs and Vps27p subfamily; composed of Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and its yeast homolog Vps27p (vacuolar protein sorting)

Probab=89.84  E-value=2.9  Score=33.42  Aligned_cols=75  Identities=15%  Similarity=0.170  Sum_probs=63.0

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+++..|-+.|+++++.++..|+..|-.+..+.-......+.+.+++..|+.++. ..++.++..++..+...+.
T Consensus        39 ~k~a~ral~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~  114 (142)
T cd03569          39 PKYAMRALKKRLLSKNPNVQLYALLLLESCVKNCGTHFHDEVASREFMDELKDLIKTTKNEEVRQKILELIQAWAL  114 (142)
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHCCHHHHHHHhhHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999998852455666777899999999987 4678999999999988875

The VHS domain, an essential part of Hrs/Vps27p, has a superhelical structure similar to the structure of ARM (Armadillo) repeats and is present at the N-termini of proteins. Hrs also contains a FYVE (Fab1p, YOTB, Vac1p, and EEA1) zinc finger domain C-terminal to VHS, as well as two coiled-coil domains. Hrs has been proposed to play a role in at least three vesicle trafficking events: exocytosis, endocytosis, and endosome to lysosome trafficking. Hrs is involved in promoting rapid recycling of endocytosed signaling receptors to the plasma membrane.

>PF08324 PUL: PUL domain; InterPro: IPR013535 The PUL (after PLAP, UFD3 and lub1) domain is a predicted predominantly alpha helical globular domain found in eukaryotes

Probab=89.83  E-value=6.9  Score=34.93  Aligned_cols=185  Identities=17%  Similarity=0.087  Sum_probs=106.5

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcC--ChHHHHHhhcC----CChHHHHHHHHHHHHhhccCCC
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAG--AIPPLVELLKF----QNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g--~i~~Lv~lL~~----~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      ...+...+.+...+-+--++..++-+.. ++..-..+...+  ....+..++..    ..+..+-.++++++|+..+..+
T Consensus        65 ~~~~~~~~~~Wp~~~~fP~lDLlRl~~l-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ml~lR~l~NlF~~~~~  143 (268)
T PF08324_consen   65 LILLLKILLSWPPESRFPALDLLRLAAL-HPPASDLLASEDSGIADLLSTLISSGSSSSPPANQMLALRLLANLFSHPPG  143 (268)
T ss_dssp             HHHHHHHHCCS-CCC-HHHHHHHHHHCC-CHCHHHHHHSTTTH-HHHHHHHHHCCTTTSSHHHHHHHHHHHHHHTTSCCC
T ss_pred             HHHHHHHHHhCCCccchhHHhHHHHHHh-CccHHHHHhccccchHHHHHHHHHhccCCCcHHHHHHHHHHHHHhhCCCcc
Confidence            4555666666555567778887877776 566655555443  23444444432    3677788999999999999888


Q ss_pred             hhHHHhc-C-ChHHHHHHhccC----CHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249          144 KPAIAAS-G-AAPLLVQILHSG----SVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       144 ~~~i~~~-~-~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                      +..+... + .+-..+..+...    +..++..++.++.|++..  ......=.....+..++..+.....+++..-.++
T Consensus       144 ~~~~~~~~~~~i~~~~~~~~~~~~~~~kn~~~A~ATl~~Nlsv~~~~~~~~~~~~~~ll~~i~~~~~~~~~d~Ea~~R~L  223 (268)
T PF08324_consen  144 RQLLLSHFDSSILELLSSLLSSLLDSNKNVRIALATLLLNLSVLLHKNRSDEEWQSELLSSIIEVLSREESDEEALYRLL  223 (268)
T ss_dssp             HHHHHCTHHTCHHHHCHCCCTTS-HHHHHHHHHHHHHHHHHHHHHHHCTS-CCHHHHHHHHHHHHCHCCHTSHHHHHHHH
T ss_pred             HHHHHhcccchHHHHHHHHhhccccccHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhccccCCHHHHHHHH
Confidence            8777633 3 333333333333    677888899999999743  1111110111244555564433323445556688


Q ss_pred             HHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHH
Q 017249          216 ALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQH  255 (375)
Q Consensus       216 ~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~  255 (375)
                      -+|++|...+..........|+-..+-..-. ...+.+++.
T Consensus       224 vAlGtL~~~~~~~~~~~~~l~~~~~~~~~~~~~~e~ri~~v  264 (268)
T PF08324_consen  224 VALGTLLSSSDSAKQLAKSLDVKSVLSKKANKSKEPRIKEV  264 (268)
T ss_dssp             HHHHHHHCCSHHHHHHCCCCTHHHHHHHHHHHTTSHHHHHH
T ss_pred             HHHHHHhccChhHHHHHHHcChHHHHHHHHhcccchHHHHH
Confidence            8899999877776666633333333333332 233444443

It is found in association with either WD repeats (see PDOC00574 from PROSITEDOC) and the PFU domain (see PDOC51394 from PROSITEDOC) or PPPDE and thioredoxin (see PDOC00172 from PROSITEDOC) domains. The PUL domain is a protein-protein interaction domain [, ]. Some proteins known to contain a PUL domain are listed below: Saccharomyces cerevisiae DOA1 (UFD3, ZZZ4), involved in ubiquitin conjugation pathway. DOA1 participates in the regulation of the ubiquitin conjugation pathway involving CDC48 by hindering multiubiquitination of substrates at the CDC48 chaperone. Schizosaccharomyces pombe ubiquitin homeostasis protein lub1, acts as a negative regulator of vacuole-dependent ubiquitin degradation. Mammalian phospholipase A-2-activating protein (PLA2P, PLAA), the homologue of DOA1. PLA2P plays an important role in the regulation of specific inflammatory disease processes. ; PDB: 3EBB_A 3L3F_X 3GAE_B 3PST_A 3PSP_A.

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.77  E-value=2  Score=31.51  Aligned_cols=74  Identities=12%  Similarity=0.113  Sum_probs=60.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      ...+...+..|+++.+-+|..++..|+++.... .  ....-..+++..+...|+++++-+--.|+..|..|+...+
T Consensus         2 ~~~~~~al~~L~dp~~PvRa~gL~~L~~Li~~~-~--~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~~p   75 (92)
T PF10363_consen    2 RETLQEALSDLNDPLPPVRAHGLVLLRKLIESK-S--EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADRHP   75 (92)
T ss_pred             hHHHHHHHHHccCCCcchHHHHHHHHHHHHHcC-C--cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHHCh
Confidence            456778889999999999999999999999988 3  1112223667888899999999999999999999997544

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.75  E-value=22  Score=35.90  Aligned_cols=131  Identities=15%  Similarity=0.050  Sum_probs=95.7

Q ss_pred             CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH
Q 017249           37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL  115 (375)
Q Consensus        37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L  115 (375)
                      +|++.+..|--+|.++..-+++-+.      .-+|.|+..++ +++|.++..|+-.|+.++--.    ..+++ .....|
T Consensus       908 sd~~lq~aA~l~L~klMClS~~fc~------ehlpllIt~mek~p~P~IR~NaVvglgD~~vcf----N~~~d-e~t~yL  976 (1128)
T COG5098         908 SDEELQVAAYLSLYKLMCLSFEFCS------EHLPLLITSMEKHPIPRIRANAVVGLGDFLVCF----NTTAD-EHTHYL  976 (1128)
T ss_pred             CCHHHHHHHHHHHHHHHHHhHHHHH------HHHHHHHHHHhhCCCcceeccceeeccccceeh----hhhhH-HHHHHH
Confidence            6899999999999888655512222      23788898886 788999999998888776421    11111 124567


Q ss_pred             HHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          116 VELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       116 v~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                      .+-|.+.+..++..++-++..|.....    +-..|-++.+..+|.+++..+..-|-..+-.++..+
T Consensus       977 yrrL~De~~~V~rtclmti~fLilagq----~KVKGqlg~ma~~L~deda~Isdmar~fft~~a~Kd 1039 (1128)
T COG5098         977 YRRLGDEDADVRRTCLMTIHFLILAGQ----LKVKGQLGKMALLLTDEDAEISDMARHFFTQIAKKD 1039 (1128)
T ss_pred             HHHhcchhhHHHHHHHHHHHHHHHccc----eeeccchhhhHhhccCCcchHHHHHHHHHHHHHhcc
Confidence            777778889999999999999865332    223578889999999999988888887777777553

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=89.53  E-value=38  Score=37.43  Aligned_cols=145  Identities=8%  Similarity=0.035  Sum_probs=102.6

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..++..|..+....+-.|+++|..+...+|.--...    .+-..+-..+.+.+..|++.|+..++...-..++.-.+
T Consensus       817 yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~----dvq~~Vh~R~~DssasVREAaldLvGrfvl~~~e~~~q  892 (1692)
T KOG1020|consen  817 YLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRP----DVQEAVHGRLNDSSASVREAALDLVGRFVLSIPELIFQ  892 (1692)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCH----HHHHHHHHhhccchhHHHHHHHHHHhhhhhccHHHHHH
Confidence            57777888888889999999999999998882222222    23344555667778899999999999766656666555


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      .++     .+..-..+....||..++..+..++...+.-..+.+  ....++....++...++.-++.++.++...
T Consensus       893 yY~-----~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~~--~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  893 YYD-----QIIERILDTGVSVRKRVIKILRDICEETPDFSKIVD--MCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             HHH-----HHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHHH--HHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence            554     455555566788999999999999987665444431  123333344455556888999999888754

>PF10363 DUF2435: Protein of unknown function (DUF2435)

Probab=89.53  E-value=1.2  Score=32.65  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=55.9

Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      +...+..+.++.+.+|.+++..|..|..... ...+...+.+..+...|+++++-+--+|..+|..|+..
T Consensus         5 ~~~al~~L~dp~~PvRa~gL~~L~~Li~~~~-~~~~~~~~il~l~l~~L~d~DsyVYL~aI~~L~~La~~   73 (92)
T PF10363_consen    5 LQEALSDLNDPLPPVRAHGLVLLRKLIESKS-EPVIDIPKILDLFLSQLKDEDSYVYLNAIKGLAALADR   73 (92)
T ss_pred             HHHHHHHccCCCcchHHHHHHHHHHHHHcCC-cchhhHHHHHHHHHHHcCCCCchHHHHHHHHHHHHHHH
Confidence            3455677788889999999999999988766 23333467788889999999999999999999999854

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=89.34  E-value=6  Score=38.86  Aligned_cols=137  Identities=13%  Similarity=0.177  Sum_probs=89.4

Q ss_pred             hCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHH
Q 017249          222 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART  301 (375)
Q Consensus       222 ~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~  301 (375)
                      ..+|++ ..++  .|.+..++.-+.+.+..+|..++.+|+.+...-.+  .+..+-.|.+..|.+-+-+..+.+|..|+.
T Consensus        80 ~~dpeg-~~~V--~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v~e--IDe~l~N~L~ekl~~R~~DRE~~VR~eAv~  154 (885)
T COG5218          80 PDDPEG-EELV--AGTFYHLLRGTESKDKKVRKRSLQILALLSDVVRE--IDEVLANGLLEKLSERLFDREKAVRREAVK  154 (885)
T ss_pred             CCChhh-hHHH--HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhcch--HHHHHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence            345555 3444  37788888888888999999999999988765532  445566788899999888899999999999


Q ss_pred             HHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHH-------HHHHHHHH---HhHHHHHHHhhhc
Q 017249          302 LLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ-------DMVQRSME---LSMTRIQQRAASS  367 (375)
Q Consensus       302 ~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~-------~l~~~s~~---~~~~~~~~~~~~~  367 (375)
                      +|..+-+....+  +..+..-++..++  .|.+...++.|.--+.       -++++..|   .|+.+++.|-.-+
T Consensus       155 ~L~~~Qe~~~ne--en~~~n~l~~~vq--nDPS~EVRr~allni~vdnsT~p~IlERarDv~~anRr~vY~r~Lp~  226 (885)
T COG5218         155 VLCYYQEMELNE--ENRIVNLLKDIVQ--NDPSDEVRRLALLNISVDNSTYPCILERARDVSGANRRMVYERCLPR  226 (885)
T ss_pred             HHHHHHhccCCh--HHHHHHHHHHHHh--cCcHHHHHHHHHHHeeeCCCcchhHHHHhhhhhHHHHHHHHHHHhhh
Confidence            999987655221  1123333444455  5666666665533211       12333332   4566666665443

>PF08167 RIX1: rRNA processing/ribosome biogenesis

Probab=89.28  E-value=6.3  Score=32.39  Aligned_cols=112  Identities=20%  Similarity=0.248  Sum_probs=73.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC--ChHHHHHhhCCCC-HHHHHHHHHHHHHhh---c
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAG--VVQPLVLMLVSPN-LDAIESSLLALLNLA---V   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~---~   97 (375)
                      ...+.++..+|++++++.+..++..+...+..+   ..+.+.+.+  .+..|+..|+.++ ..+.+.++.+|..+.   .
T Consensus        24 ~~l~~ri~~LL~s~~~~~rw~G~~Ll~~~~~~~---~~e~l~~~~~~W~~~Ll~~L~~~~~~~~~~~ai~~L~~l~~~~~  100 (165)
T PF08167_consen   24 HKLVTRINSLLQSKSAYSRWAGLCLLKVTVEQC---SWEILLSHGSQWLRALLSILEKPDPPSVLEAAIITLTRLFDLIR  100 (165)
T ss_pred             HHHHHHHHHHhCCCChhhHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence            445566777888999999999988888888665   245565553  6888999998764 556777777776665   4


Q ss_pred             cChhhHHHHHH---cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc
Q 017249           98 RNERNKVKIAT---AGAIPPLVELLKFQNGTLRELAAAAILTLSAA  140 (375)
Q Consensus        98 ~~~~~r~~i~~---~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~  140 (375)
                      +.++..+.+..   .+.++.++.+++.  ......++.+|..+...
T Consensus       101 ~~p~l~Rei~tp~l~~~i~~ll~l~~~--~~~~~~~l~~L~~ll~~  144 (165)
T PF08167_consen  101 GKPTLTREIATPNLPKFIQSLLQLLQD--SSCPETALDALATLLPH  144 (165)
T ss_pred             CCCchHHHHhhccHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHH
Confidence            44554444443   2345555555544  45556677777776543

>KOG4535 consensus HEAT and armadillo repeat-containing protein [General function prediction only]

Probab=89.27  E-value=14  Score=35.57  Aligned_cols=262  Identities=13%  Similarity=0.052  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc------CCChhHHHhcCChHHH
Q 017249           83 DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA------APNKPAIAASGAAPLL  156 (375)
Q Consensus        83 ~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~------~~~~~~i~~~~~l~~L  156 (375)
                      .++-+++..|..++..-.-.|..+.+  ....+..-+....+.++.++..++..+-..      ++.-+.-...+.+..+
T Consensus       270 ~~rle~~qvl~~~a~~~~~~~~~~~~--l~RvI~~~~~~~~p~~~l~~a~ll~~lg~~lv~~~~P~~~k~~~q~~~fw~~  347 (728)
T KOG4535|consen  270 PMRLEALQVLTLLARYFSMTQAYLME--LGRVICKCMGEADPSIQLHGAKLLEELGTGLIQQYKPDSTKAPDQRAPFWTM  347 (728)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHccCCCCChHHHHHHHHHHHHHHHHHhhhcCCCcccchhhhccHHHH
Confidence            35566666666666532222222222  222333334556889999999988776422      1111111111211111


Q ss_pred             ------HHHh-ccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccc--hHHHHHHHHHHHHhhCChhh
Q 017249          157 ------VQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKY--SKFAEKATALLEILSSSEEG  227 (375)
Q Consensus       157 ------~~lL-~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~--~~~~~~a~~~L~~l~~~~~~  227 (375)
                            -... ++.-+..+..+|.++.++...+...   ...|--..+..++..++++  .-+...|.+.+.-+.-++..
T Consensus       348 ~l~~p~~~~~YDs~~~Tl~~s~Cdals~i~~~~f~~---lpn~~~T~~~~Fl~GC~d~~~~lv~~aA~Ra~~VyVLHp~l  424 (728)
T KOG4535|consen  348 MLNGPLPRALYDSEHPTLQASACDALSSILPEAFSN---LPNDRQTLCITFLLGCNDSKNRLVKAAASRALGVYVLHPCL  424 (728)
T ss_pred             HccCCChhhhhhhcCCCchhHHHHHHhhcCchhhcC---CCCcchhhhHHHHhcccchHHHHHHHHHHhhceeEEeccch
Confidence                  1111 1223455777888888776421100   0001111122233333222  22444455555555556655


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhccc----C-cHHHHHHHHHcCChHHHHHHhh---hCCHHHHHHH
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS----C-RDKYRQLILKEGAIPGLLRLTV---EGTFEAQERA  299 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~----~-~~~~~~~l~~~g~v~~L~~ll~---~~~~~~~~~A  299 (375)
                      +....-...+...+...|.+..-..|+.+.|.+.|+...    . .++....-+..-.+..+.....   -...+++.+|
T Consensus       425 r~d~~fv~~aa~~il~sl~d~~ln~r~KaawtlgnITdAL~~~~Ps~~s~~eR~sg~ll~~~~~~A~~~~Ad~dkV~~na  504 (728)
T KOG4535|consen  425 RQDVIFVADAANAILMSLEDKSLNVRAKAAWSLGNITDALIVNMPTPDSFQERFSGLLLLKMLRSAIEASADKDKVKSNA  504 (728)
T ss_pred             hhhHHHHHHHHHHHHHHhhhHhHhHHHHHHHHhhhhHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhHH
Confidence            554332345666677777777778899999999998652    1 1111111112223344444332   2458899999


Q ss_pred             HHHHHHhhcCChh------hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          300 RTLLDLLRDTPQE------KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       300 ~~~L~~l~~~~~~------~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      +++|.++...-+.      .....+.+.++.+...  ..+.-+.+=.|.-++.||++.
T Consensus       505 vraLgnllQvlq~i~~~~~~e~~~~~~~~l~~~v~--~~~~~kV~WNaCya~gNLfkn  560 (728)
T KOG4535|consen  505 VRALGNLLQFLQPIEKPTFAEIIEESIQALISTVL--TEAAMKVRWNACYAMGNLFKN  560 (728)
T ss_pred             HHHHhhHHHHHHHhhhccHHHHHHHHHHhccccee--cccccccchHHHHHHHHhhcC
Confidence            9999999865531      2222333333443322  334455666666677777643

>cd03561 VHS VHS domain family; The VHS domain is present in Vps27 (Vacuolar Protein Sorting), Hrs (Hepatocyte growth factor-regulated tyrosine kinase substrate) and STAM (Signal Transducing Adaptor Molecule)

Probab=88.81  E-value=4.6  Score=31.85  Aligned_cols=76  Identities=14%  Similarity=0.123  Sum_probs=62.1

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC---CCHHHHHHHHHHHHHhhcc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS---PNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~---~~~~~~~~a~~~L~~L~~~   98 (375)
                      ..+++..|-..|+++++.++..|+..|-.+..+..+.....+....++..|+.++..   .++.++..++..+...+..
T Consensus        35 ~k~a~raL~krl~~~n~~vql~AL~lLd~~vkNcg~~f~~~i~s~~fl~~l~~l~~~~~~~~~~Vk~kil~ll~~W~~~  113 (133)
T cd03561          35 PKEAARAIRKKIKYGNPHVQLLALTLLELLVKNCGKPFHLQVADKEFLLELVKIAKNSPKYDPKVREKALELILAWSES  113 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCChHHHHHHhhHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence            356788888899999999999999999999988733455666666888889999975   4789999999999888753

It has a superhelical structure similar to that of the ARM (Armadillo) repeats and is present at the N-termini of proteins involved in intracellular membrane trafficking. There are four general groups of VHS domain containing proteins based on their association with other domains. The first group consists of proteins of the STAM/EAST/Hbp family which has the domain composition VHS-SH3-ITAM. The second consists of proteins with a FYVE domain C-terminal to VHS. The third consists of GGA proteins with a domain composition VHS-GAT (GGA and TOM)-GAE (gamma-adaptin ear) domain. The fourth consists of proteins with a VHS domain alone or with domains other than those mentioned above. In GGA proteins, VHS domains are involved in cargo recognition in trans-Golgi, thereby having a general me

>COG5218 YCG1 Chromosome condensation complex Condensin, subunit G [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=88.31  E-value=7.8  Score=38.10  Aligned_cols=109  Identities=16%  Similarity=0.182  Sum_probs=74.8

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc--Chh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR--NER  101 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~--~~~  101 (375)
                      .+.+..+++.+.+.+..++..++.+|+.+...-  ...+...-.|.+..|.+.+-+..+.++.+|+.+|..+-..  +++
T Consensus        90 ~~~~~h~lRg~eskdk~VR~r~lqila~~~d~v--~eIDe~l~N~L~ekl~~R~~DRE~~VR~eAv~~L~~~Qe~~~nee  167 (885)
T COG5218          90 AGTFYHLLRGTESKDKKVRKRSLQILALLSDVV--REIDEVLANGLLEKLSERLFDREKAVRREAVKVLCYYQEMELNEE  167 (885)
T ss_pred             HHHHHHHHhcccCcchhHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHhccCChH
Confidence            345666677777889999999999998887655  3333445567788888888888889999999999987643  333


Q ss_pred             hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCCh
Q 017249          102 NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNK  144 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~  144 (375)
                      ++.       ...|+..++. ++.++|..|   |.|+..++...
T Consensus       168 n~~-------~n~l~~~vqnDPS~EVRr~a---llni~vdnsT~  201 (885)
T COG5218         168 NRI-------VNLLKDIVQNDPSDEVRRLA---LLNISVDNSTY  201 (885)
T ss_pred             HHH-------HHHHHHHHhcCcHHHHHHHH---HHHeeeCCCcc
Confidence            332       2245555544 467777654   66776655443

>PF12530 DUF3730: Protein of unknown function (DUF3730) ; InterPro: IPR022542 This domain is found in eukaryotes, and is typically between 220 and 262 amino acids in length

Probab=88.25  E-value=17  Score=31.80  Aligned_cols=201  Identities=15%  Similarity=0.079  Sum_probs=104.2

Q ss_pred             HHHHH-hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh
Q 017249           71 QPLVL-MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA  149 (375)
Q Consensus        71 ~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~  149 (375)
                      +.|+- .-+..+++.+...+..|..++..+..+...+     +..|..+.+.++...+..+...+..+-...+- ..   
T Consensus         3 ~~L~~~l~~~~~~~~~~~~L~~L~~l~~~~~~~~~~v-----~~~L~~L~~~~~~~~~~~~~rLl~~lw~~~~r-~f---   73 (234)
T PF12530_consen    3 PLLLYKLGKISDPELQLPLLEALPSLACHKNVCVPPV-----LQTLVSLVEQGSLELRYVALRLLTLLWKANDR-HF---   73 (234)
T ss_pred             HHHHHHhcCCCChHHHHHHHHHHHHHhccCccchhHH-----HHHHHHHHcCCchhHHHHHHHHHHHHHHhCch-HH---
Confidence            33443 4455688999999999999998541333333     34666666677666666666666666443321 11   


Q ss_pred             cCChHHHHHH--h------ccC--CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHh-hhcccchHHHHHHHHHH
Q 017249          150 SGAAPLLVQI--L------HSG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLL-KDCKKYSKFAEKATALL  218 (375)
Q Consensus       150 ~~~l~~L~~l--L------~~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll-~~~~~~~~~~~~a~~~L  218 (375)
                       +.+..++..  +      ...  ..+.....+.++..++...++    .....++.+..++ .++  ++..+..++.+|
T Consensus        74 -~~L~~~L~~~~~r~~~~~~~~~~~~~~~i~~a~s~~~ic~~~p~----~g~~ll~~ls~~L~~~~--~~~~~alale~l  146 (234)
T PF12530_consen   74 -PFLQPLLLLLILRIPSSFSSKDEFWECLISIAASIRDICCSRPD----HGVDLLPLLSGCLNQSC--DEVAQALALEAL  146 (234)
T ss_pred             -HHHHHHHHHHHhhcccccCCCcchHHHHHHHHHHHHHHHHhChh----hHHHHHHHHHHHHhccc--cHHHHHHHHHHH
Confidence             333433333  1      111  234455556677778765444    2223666777777 343  445677788888


Q ss_pred             HHhhCChhhhHHHhhccCcHHHHHHHhccC-ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC
Q 017249          219 EILSSSEEGRIAITNSDGGILTLVETVEDG-SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT  292 (375)
Q Consensus       219 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~  292 (375)
                      ..||     ...++.-......+...+... .+.+...-+..+..+.....+...-......++..+-++....+
T Consensus       147 ~~Lc-----~~~vvd~~s~w~vl~~~l~~~~rp~v~~~l~~l~~l~~~~~~~~e~~~~~~~~~l~~lW~~~~~~~  216 (234)
T PF12530_consen  147 APLC-----EAEVVDFYSAWKVLQKKLSLDYRPLVLKSLCSLFALVPQGAVDSEEYEELKRQILQLLWEYTSSSD  216 (234)
T ss_pred             HHHH-----HHhhccHHHHHHHHHHhcCCccchHHHHHHHHHHHHhccccCChhhhhHHHHHHHHHHHhhccccc
Confidence            8888     222221122334444545332 34443333333333332221111112234455555555555443

>KOG1243 consensus Protein kinase [General function prediction only]

Probab=88.16  E-value=6.9  Score=39.18  Aligned_cols=192  Identities=13%  Similarity=0.128  Sum_probs=125.7

Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249          149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  228 (375)
Q Consensus       149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~  228 (375)
                      ..+.+|.|++++...+..++...+.=+-...  +.....+++..++|.+..-+.+.  ++.+++.++..+..|+..-..+
T Consensus       328 q~~i~p~l~kLF~~~Dr~iR~~LL~~i~~~i--~~Lt~~~~~d~I~phv~~G~~DT--n~~Lre~Tlksm~~La~kL~~~  403 (690)
T KOG1243|consen  328 QVRIIPVLLKLFKSPDRQIRLLLLQYIEKYI--DHLTKQILNDQIFPHVALGFLDT--NATLREQTLKSMAVLAPKLSKR  403 (690)
T ss_pred             ccchhhhHHHHhcCcchHHHHHHHHhHHHHh--hhcCHHhhcchhHHHHHhhcccC--CHHHHHHHHHHHHHHHhhhchh
Confidence            4568999999999999887766554443332  22345567778999999888876  4578888888888777532222


Q ss_pred             HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcC-ChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEG-AIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g-~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                        .+ .......+..+=.+....+|..-..+|..++.+..+.     .+.+ .+....+.+++.-+..|..++..+....
T Consensus       404 --~L-n~Ellr~~ar~q~d~~~~irtntticlgki~~~l~~~-----~R~~vL~~aftralkdpf~paR~a~v~~l~at~  475 (690)
T KOG1243|consen  404 --NL-NGELLRYLARLQPDEHGGIRTNTTICLGKIAPHLAAS-----VRKRVLASAFTRALKDPFVPARKAGVLALAATQ  475 (690)
T ss_pred             --hh-cHHHHHHHHhhCccccCcccccceeeecccccccchh-----hhccccchhhhhhhcCCCCCchhhhhHHHhhcc
Confidence              11 1122333333333455678888888888887765332     2333 3344555666777888999999999888


Q ss_pred             cCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249          308 DTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  355 (375)
Q Consensus       308 ~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~  355 (375)
                      +..+..-++..+++.++...   .+.....+..|-+.+..+.....+.
T Consensus       476 ~~~~~~~va~kIlp~l~pl~---vd~e~~vr~~a~~~i~~fl~kl~~~  520 (690)
T KOG1243|consen  476 EYFDQSEVANKILPSLVPLT---VDPEKTVRDTAEKAIRQFLEKLEKV  520 (690)
T ss_pred             cccchhhhhhhccccccccc---cCcccchhhHHHHHHHHHHhhhhhh
Confidence            88877667777888776554   4555666677777777666444333

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=87.95  E-value=12  Score=37.64  Aligned_cols=134  Identities=14%  Similarity=0.088  Sum_probs=90.5

Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC
Q 017249           65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      +...+++.|..-+++.+..+|+.++..+...+..   .--.++..-++|.|..+.. ..+..++..++.|+..+...-+ 
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~---iD~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q~lD-  461 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAES---IDVPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQRLD-  461 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHh---ccHHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHHHHH-
Confidence            3345678888888888999999999999888753   1245566667788877643 3478889999999999882211 


Q ss_pred             hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc
Q 017249          144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC  204 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~  204 (375)
                      +..  ....+.++.+..+..++.+......+..++.........+....++|.++-+...+
T Consensus       462 ~~~--v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~  520 (700)
T KOG2137|consen  462 KAA--VLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAP  520 (700)
T ss_pred             HHH--hHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcc
Confidence            111  12335566666677788888888888887775433323444456777776665554

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=87.91  E-value=8.6  Score=39.48  Aligned_cols=168  Identities=17%  Similarity=0.078  Sum_probs=109.1

Q ss_pred             HHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHcCChH--HHHHhhcCC-C
Q 017249           48 DIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIP--PLVELLKFQ-N  123 (375)
Q Consensus        48 ~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~--~Lv~lL~~~-~  123 (375)
                      +|.+..... +++...+.+.|++..+...++. ...+.+..++..+.+++.. .+.+..+.....+.  .+-.++..- +
T Consensus       494 ~l~~~t~~~-~~~C~~~l~~~g~~~~~~~l~~f~~~~~~~~il~~l~n~~~~-~~~~~~~~~~~~~~~~~f~~~~~~w~~  571 (699)
T KOG3665|consen  494 ALWNITDEN-PETCKEFLDNGGMKLLFKCLESFDNEELHRKILGLLGNLAEV-LELRELLMIFEFIDFSVFKVLLNKWDS  571 (699)
T ss_pred             HHHhhhcCC-HHHHHHHHhcccHHHHHHHHhhccchhHHHHHHHHHHHHHHH-hhhhhhhhHHHHHHHHHHHHHHhhcch
Confidence            666777777 8899999999999999999975 4568899999999999974 33443333222222  333344333 3


Q ss_pred             hHHHHHHHHHHHHhhccCCC------hh----HHH--------------hcCChHH-HHHHhccC-CHHHHHHHHHHHHH
Q 017249          124 GTLRELAAAAILTLSAAAPN------KP----AIA--------------ASGAAPL-LVQILHSG-SVQGRVDAVTALHY  177 (375)
Q Consensus       124 ~~~~~~a~~~L~~Ls~~~~~------~~----~i~--------------~~~~l~~-L~~lL~~~-~~~~~~~a~~~L~~  177 (375)
                      .+.-..++..|..+..+.+.      +.    .+.              ....+.+ +..++... .+..+..|++++.+
T Consensus       572 ~ersY~~~siLa~ll~~~~~~~~~~~r~~~~~~l~e~i~~~~~~~~~~~~~~~f~~~~~~il~~s~~~g~~lWal~ti~~  651 (699)
T KOG3665|consen  572 IERSYNAASILALLLSDSEKTTECVFRNSVNELLVEAISRWLTSEIRVINDRSFFPRILRILRLSKSDGSQLWALWTIKN  651 (699)
T ss_pred             hhHHHHHHHHHHHHHhCCCcCccccchHHHHHHHHHHhhccCccceeehhhhhcchhHHHHhcccCCCchHHHHHHHHHH
Confidence            37777888888887765331      10    000              0112223 44445443 46678899999999


Q ss_pred             hccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249          178 LSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL  218 (375)
Q Consensus       178 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L  218 (375)
                      +... ++++..+...++++.+.++-.... ...+...+..++
T Consensus       652 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i  692 (699)
T KOG3665|consen  652 VLEQNKEYCKLVRESNGFELIENIRVLSE-VVDVKEEAVLVI  692 (699)
T ss_pred             HHHcChhhhhhhHhccchhhhhhcchhHH-HHHHHHHHHHHh
Confidence            8854 578888888899998887766544 444444444443

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=87.69  E-value=19  Score=36.02  Aligned_cols=161  Identities=17%  Similarity=0.163  Sum_probs=93.9

Q ss_pred             CHHHHHHHHHHHHHHHhhCChhhHHHH---HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CCh
Q 017249           38 DLETKIEAARDIRKVVKKSSLKTRSEF---AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAI  112 (375)
Q Consensus        38 ~~~~~~~a~~~l~~l~~~~~~~~~~~~---~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i  112 (375)
                      .++++.-|+-+|+-+..+. ..+-..+   .....+..++..+. .++..+..++++|.|+.. ++..+..+...  ..+
T Consensus       557 p~~~~fPalDilRl~v~h~-~~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~-~~~g~~~~~s~~~~i~  633 (745)
T KOG0301|consen  557 PVEMMFPALDILRLAVKHH-SSNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFS-NPAGRELFMSRLESIL  633 (745)
T ss_pred             CHHHhhhHHHHHHHHHhcc-chhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHh
Confidence            4555666777777776665 2221111   11235566666666 556778999999999998 47777777653  222


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHhccC-----CHHHHHHHHHHHHHhccCCCCc
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQILHSG-----SVQGRVDAVTALHYLSTCKENS  185 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL~~~-----~~~~~~~a~~~L~~L~~~~~~~  185 (375)
                      ..+.+.-..++..++..-+....|++..  ..+-+    .++.+.+...+...     +.+....++.+|.+|+..+...
T Consensus       634 ~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL~t~~~~~  709 (745)
T KOG0301|consen  634 DPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTLMTVDASV  709 (745)
T ss_pred             hhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhhccccHHH
Confidence            3333332233456665555555555432  22111    34445554444321     3345666778888998888777


Q ss_pred             hhhhhcCCcHHHHHHhhhcc
Q 017249          186 SPILDATAVPPLINLLKDCK  205 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~  205 (375)
                      .++...-.+..+++-+++..
T Consensus       710 ~~~A~~~~v~sia~~~~~~~  729 (745)
T KOG0301|consen  710 IQLAKNRSVDSIAKKLKEAV  729 (745)
T ss_pred             HHHHHhcCHHHHHHHHHHhc
Confidence            77777667777777776654

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=87.65  E-value=4.3  Score=31.46  Aligned_cols=73  Identities=14%  Similarity=0.161  Sum_probs=53.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCC--------HHHHHHHHHHHHHh
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPN--------LDAIESSLLALLNL   95 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~--------~~~~~~a~~~L~~L   95 (375)
                      ..+..|.+.|+..++.++.+++++|..++...++..+..+.+. ..|..+.++=...+        ..|+..|-.++..+
T Consensus        38 ei~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~i  117 (122)
T cd03572          38 ELLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAI  117 (122)
T ss_pred             HHHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHH
Confidence            5677888888888899999999999999998866777766654 56777777665332        45666666666555


Q ss_pred             hc
Q 017249           96 AV   97 (375)
Q Consensus        96 ~~   97 (375)
                      ..
T Consensus       118 f~  119 (122)
T cd03572         118 FS  119 (122)
T ss_pred             hc
Confidence            43

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>COG5098 Chromosome condensation complex Condensin, subunit D2 [Chromatin structure and dynamics / Cell division and chromosome partitioning]

Probab=87.27  E-value=36  Score=34.50  Aligned_cols=115  Identities=11%  Similarity=0.073  Sum_probs=82.2

Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH------cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~------~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ..++.+|++.+-.+|-..+.+.+|+..+-..  ...+.+      ...+..|++-+.+.+|-+|.+|...+..+..-+..
T Consensus       302 ~~~~~LLdses~tlRc~~~EicaN~V~~~~~--d~qm~e~~~~~~~~Lv~ll~ERl~D~~py~RtKalqv~~kifdl~sk  379 (1128)
T COG5098         302 EHFDELLDSESFTLRCCFLEICANLVEHFKK--DGQMVEHYKQKLNDLVGLLVERLSDTYPYTRTKALQVLEKIFDLNSK  379 (1128)
T ss_pred             HHHHHHhcccchhHHHHHHHHHHHHHHHHhc--chhhHhhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHhCccc
Confidence            4566778888888888888888898775321  111222      34566677777788999999999999888876632


Q ss_pred             -hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhHH
Q 017249          313 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMT  358 (375)
Q Consensus       313 -~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~  358 (375)
                       .-.++.++.-.++-++   |.+.-.++.|.++.-.|.-+.+.+.|+
T Consensus       380 ~~~~r~ev~~lv~r~lq---Drss~VRrnaikl~SkLL~~HPF~~~h  423 (1128)
T COG5098         380 TVGRRHEVIRLVGRRLQ---DRSSVVRRNAIKLCSKLLMRHPFASEH  423 (1128)
T ss_pred             ccchHHHHHHHHHHHhh---hhhHHHHHHHHHHHHHHHhcCChhhhc
Confidence             1223345554445454   777889999999999998888888888

>KOG2137 consensus Protein kinase [Signal transduction mechanisms]

Probab=87.16  E-value=11  Score=37.89  Aligned_cols=138  Identities=17%  Similarity=0.170  Sum_probs=98.0

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccCh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +....+|.|...+++.+...|..++..+..++.-- +   ..+++.-++|.+-.+ +.+.+..++..++-++..+..   
T Consensus       386 ~~~~IlplL~~S~~~~~~~iQ~~~L~~lptv~e~i-D---~~~vk~~ilP~l~~l~~~tt~~~vkvn~L~c~~~l~q---  458 (700)
T KOG2137|consen  386 VKEKILPLLYRSLEDSDVQIQELALQILPTVAESI-D---VPFVKQAILPRLKNLAFKTTNLYVKVNVLPCLAGLIQ---  458 (700)
T ss_pred             HHHHHHHHHHHHhcCcchhhHHHHHHhhhHHHHhc-c---HHHHHHHHHHHhhcchhcccchHHHHHHHHHHHHHHH---
Confidence            45667778888888889999999999998887655 2   334555557776554 455678899999999999883   


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHH
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQG  167 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~  167 (375)
                       ..+...-..-+.++.+..+..++.+....+.+..++.........+....++|.++.+...+....
T Consensus       459 -~lD~~~v~d~~lpi~~~~~~~dp~iv~~~~~i~~~l~~~~~~g~ev~~~~VlPlli~ls~~~~L~~  524 (700)
T KOG2137|consen  459 -RLDKAAVLDELLPILKCIKTRDPAIVMGFLRIYEALALIIYSGVEVMAENVLPLLIPLSVAPSLNG  524 (700)
T ss_pred             -HHHHHHhHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHhhcccceeeehhhhhhhhhhhhhcccccH
Confidence             222222223355666667778899988888888888877655445556788898888877665433

>KOG1020 consensus Sister chromatid cohesion protein SCC2/Nipped-B [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]

Probab=86.76  E-value=6.9  Score=42.67  Aligned_cols=144  Identities=10%  Similarity=0.039  Sum_probs=95.4

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      +.+..++..|..+...+|..|+++|.++..-++... ...+..    .+..-+.+.+..||+.|+..+.......+.  .
T Consensus       816 ~yLk~Il~~l~e~~ialRtkAlKclS~ive~Dp~vL~~~dvq~----~Vh~R~~DssasVREAaldLvGrfvl~~~e--~  889 (1692)
T KOG1020|consen  816 PYLKLILSVLGENAIALRTKALKCLSMIVEADPSVLSRPDVQE----AVHGRLNDSSASVREAALDLVGRFVLSIPE--L  889 (1692)
T ss_pred             HHHHHHHHHhcCchHHHHHHHHHHHHHHHhcChHhhcCHHHHH----HHHHhhccchhHHHHHHHHHHhhhhhccHH--H
Confidence            457788888998889999999999999987655432 122222    334444566788999999999875443220  0


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchH-HHHHHHHHHHHhhCC
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSK-FAEKATALLEILSSS  224 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~-~~~~a~~~L~~l~~~  224 (375)
                        .......+..-+.+....|+..+...++.+|...++-..+.     ..++++++.-++.+. +++.+..++.++...
T Consensus       890 --~~qyY~~i~erIlDtgvsVRKRvIKIlrdic~e~pdf~~i~-----~~cakmlrRv~DEEg~I~kLv~etf~klWF~  961 (1692)
T KOG1020|consen  890 --IFQYYDQIIERILDTGVSVRKRVIKILRDICEETPDFSKIV-----DMCAKMLRRVNDEEGNIKKLVRETFLKLWFT  961 (1692)
T ss_pred             --HHHHHHHHHhhcCCCchhHHHHHHHHHHHHHHhCCChhhHH-----HHHHHHHHHhccchhHHHHHHHHHHHHHhcc
Confidence              11234556666667778889999999999987655444433     345666665443333 777777777777644

>PF08506 Cse1: Cse1; InterPro: IPR013713 The exchange of macromolecules between the nucleus and cytoplasm takes place through nuclear pore complexes within the nuclear membrane

Probab=86.22  E-value=30  Score=32.59  Aligned_cols=208  Identities=17%  Similarity=0.149  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhccChhhH---------HH
Q 017249           40 ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-----NLDAIESSLLALLNLAVRNERNK---------VK  105 (375)
Q Consensus        40 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~~~~~r---------~~  105 (375)
                      .+|..++..+...+... ++.-..+.. ..+....++|.+-     ...+...++..|..++. .+..+         ..
T Consensus       111 kvK~~i~~~~~ly~~kY-~e~f~~~l~-~fv~~vw~lL~~~~~~~~~D~lv~~al~FL~~v~~-~~~~~~lf~~~~~L~~  187 (370)
T PF08506_consen  111 KVKAWICENLNLYAEKY-EEEFEPFLP-TFVQAVWNLLTKISQQPKYDILVSKALQFLSSVAE-SPHHKNLFENKPHLQQ  187 (370)
T ss_dssp             HHHHHHHHHHHHHHHH--HHHHHHHHH-HHHHHHHHHHTC--SSGGGHHHHHHHHHHHHHHHT-SHHHHTTT-SHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHHH-HHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHc-chhHHHHhCCHHHHHH
Confidence            34555666776666655 333222221 3445555555432     24566678888877665 33333         22


Q ss_pred             HHHcCChHHHH------Hhh------------c-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc-----
Q 017249          106 IATAGAIPPLV------ELL------------K-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH-----  161 (375)
Q Consensus       106 i~~~g~i~~Lv------~lL------------~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~-----  161 (375)
                      +++.=++|.+.      ++.            + +....-|..|...|..|+..-+..   ...-....+-.++.     
T Consensus       188 Iie~VI~Pnl~~~e~D~ElfEddP~EYIrrd~e~sd~~TrR~AA~dfl~~L~~~~~~~---v~~i~~~~i~~~l~~y~~~  264 (370)
T PF08506_consen  188 IIEKVIFPNLCLREEDEELFEDDPEEYIRRDLEGSDSDTRRRAACDFLRSLCKKFEKQ---VTSILMQYIQQLLQQYASN  264 (370)
T ss_dssp             HHHHTHHHHHS--HHHHHHHHHSHHHHHHHHSCSS---SHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHhccCccCCCHHHHHHHccCHHHHHHhhccccccCCcHHHHHHHHHHHHHHHhHH---HHHHHHHHHHHHHHHHhhC
Confidence            22222222221      111            1 112344677888888887542211   11111122233333     


Q ss_pred             -cCCHHHHHHHHHHHHHhccCCCCch-------------hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249          162 -SGSVQGRVDAVTALHYLSTCKENSS-------------PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  227 (375)
Q Consensus       162 -~~~~~~~~~a~~~L~~L~~~~~~~~-------------~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~  227 (375)
                       +.+..-+..|+.++..|+.......             .+...-++|.|.   .+.+..+-++..|++.+..+... -.
T Consensus       265 ~~~~w~~KD~Al~Li~ala~k~~t~~~Gvt~~~~~v~v~~Ff~~~v~peL~---~~~~~~piLka~aik~~~~Fr~~-l~  340 (370)
T PF08506_consen  265 PSNNWRSKDGALYLIGALASKGSTTKSGVTQTNELVDVVDFFSQHVLPELQ---PDVNSHPILKADAIKFLYTFRNQ-LP  340 (370)
T ss_dssp             TTT-HHHHHHHHHHHHHHHBSS--BTTB-S-B-TTS-HHHHHHHHTCHHHH----SS-S-HHHHHHHHHHHHHHGGG-S-
T ss_pred             CcccHHHHHHHHHHHHHHHhhhccccCCcccccccccHHHHHHHHhHHHhc---ccCCCCcchHHHHHHHHHHHHhh-CC
Confidence             2356778889999999986543221             111222333332   12233445666666666655442 12


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  260 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  260 (375)
                      ...+.   +.++.++.+|.+++..++.+|+.++
T Consensus       341 ~~~l~---~~~~~l~~~L~~~~~vv~tyAA~~i  370 (370)
T PF08506_consen  341 KEQLL---QIFPLLVNHLQSSSYVVHTYAAIAI  370 (370)
T ss_dssp             HHHHH---HHHHHHHHHTTSS-HHHHHHHHHHH
T ss_pred             HHHHH---HHHHHHHHHhCCCCcchhhhhhhhC
Confidence            22333   5899999999999998999988765

Active transport of large molecules through these pore complexes require carrier proteins, called karyopherins (importins and exportins), which shuttle between the two compartments. This domain is found in exportin Cse1 (also known as importin-alpha re-exporter). Exportin Cse1 mediates nuclear transport of importin-alpha back into the cytosol, where importin-alpha functions as a transporter of proteins carrying nuclear localisation signals (NLS) from the cytoplasm into the nucleus [, , ]. This domain contains HEAT repeats. More information about these proteins can be found at Protein of the Month: Importins [].; GO: 0006886 intracellular protein transport; PDB: 1Z3H_B 1WA5_C.

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=86.21  E-value=7  Score=30.83  Aligned_cols=75  Identities=17%  Similarity=0.105  Sum_probs=60.7

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--HHHHHHHHHHHHHhhc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--LDAIESSLLALLNLAV   97 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--~~~~~~a~~~L~~L~~   97 (375)
                      ..+++..|-..|+++++.++..|+..|-.+..+..+.....+.+.+++..|+.++++..  +.++..++..+...+.
T Consensus        35 ~k~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       35 PKDAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            35677888888999999999999999999998863456666777889999999987753  3488888888888775

Unpublished observations. Domain of unknown function.

>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]

Probab=86.13  E-value=35  Score=34.25  Aligned_cols=168  Identities=8%  Similarity=0.098  Sum_probs=93.7

Q ss_pred             HHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH----cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH
Q 017249           73 LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT----AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA  148 (375)
Q Consensus        73 Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~----~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~  148 (375)
                      .+..+-.-..+.+--|+.+|+.+..+.. .-..++.    ...+..++..+. .++.-+..++++|.|+..++.++..+.
T Consensus       549 ~l~~l~~wp~~~~fPalDilRl~v~h~~-~~s~~~~~~~~~~~~~~li~~~~-~~~an~ll~vR~L~N~f~~~~g~~~~~  626 (745)
T KOG0301|consen  549 ALAILLQWPVEMMFPALDILRLAVKHHS-SNSLFCDREEGQNLVGTLIPILN-ADPANQLLVVRCLANLFSNPAGRELFM  626 (745)
T ss_pred             HHHHHhcCCHHHhhhHHHHHHHHHhccc-hhhhhhhhhhhhHHHHhhhcccc-cchhHHHHHHHHHHHhccCHHHHHHHH
Confidence            3444445566778888888888887433 3333332    234445555554 557777899999999999877777665


Q ss_pred             hc--CChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccc-hH--HHHHHHHHHHHh
Q 017249          149 AS--GAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKY-SK--FAEKATALLEIL  221 (375)
Q Consensus       149 ~~--~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~-~~--~~~~a~~~L~~l  221 (375)
                      ..  -.+..+...=..++..++...+....|++..  ..+-+    .++.+.|...+....++ +.  ..-..+-+|.+|
T Consensus       627 s~~~~i~~~~~~~~s~~~knl~ia~atlaln~sv~l~~~~~~----~~~~~~l~~ai~~~~e~~~d~EA~yR~l~AlgtL  702 (745)
T KOG0301|consen  627 SRLESILDPVIEASSLSNKNLQIALATLALNYSVLLIQDNEQ----LEGKEVLLSAISTLLEPVDDLEAIYRLLVALGTL  702 (745)
T ss_pred             HHHHHHhhhhhhhhcccchhHHHHHHHHHHHHHHHHHhcccc----cchHHHHHHHHHhhcccchhHHHHHHHHHHHHhh
Confidence            33  2222233222223344544444444455421  11111    35555555555432211 11  122345667788


Q ss_pred             hCChhhhHHHhhccCcHHHHHHHhcc
Q 017249          222 SSSEEGRIAITNSDGGILTLVETVED  247 (375)
Q Consensus       222 ~~~~~~~~~~~~~~g~v~~Lv~lL~~  247 (375)
                      +..+....++.. .-.+..++.-+++
T Consensus       703 ~t~~~~~~~~A~-~~~v~sia~~~~~  727 (745)
T KOG0301|consen  703 MTVDASVIQLAK-NRSVDSIAKKLKE  727 (745)
T ss_pred             ccccHHHHHHHH-hcCHHHHHHHHHH
Confidence            888877777773 4567778777754

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=86.05  E-value=7.7  Score=31.70  Aligned_cols=145  Identities=13%  Similarity=0.097  Sum_probs=79.6

Q ss_pred             HhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           24 QALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        24 ~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      -..++.|++.|+. .++.++.++++.|+.+-.=+ | .+....+.+ .+.-.  -............. .....    ..
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALD-P-~~~k~~~~~-~~~~~--~~~~~~~~~~~~l~-~~~~~----~~   78 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALD-P-YKHKSIQKS-LDSKS--SENSNDESTDISLP-MMGIS----PS   78 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccC-c-HHHhccccc-CCccc--cccccccchhhHHh-hccCC----Cc
Confidence            4567778888874 46899999999999987666 2 332221111 11000  00111111111111 11121    12


Q ss_pred             HHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          103 KVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      -+..+-..++..|+..|++++ ..-+..++.++.++......+..-.-...+|.++..++..+...++....-|..|
T Consensus        79 ~ee~y~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   79 SEEYYPTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYLPQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             hHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHHHHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            233334446678888888774 3334567777777764433333222356789999999877767677666655554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>PF06685 DUF1186: Protein of unknown function (DUF1186); InterPro: IPR010602 This family consists of several hypothetical bacterial proteins of around 250 residues in length and is found in several Chlamydia and Anabaena species

Probab=85.88  E-value=24  Score=31.13  Aligned_cols=151  Identities=15%  Similarity=0.112  Sum_probs=86.7

Q ss_pred             cCChHHHHHhhcCC-----------ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHH--------HHH
Q 017249          109 AGAIPPLVELLKFQ-----------NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ--------GRV  169 (375)
Q Consensus       109 ~g~i~~Lv~lL~~~-----------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~--------~~~  169 (375)
                      ...+|.|+.+|...           +.....+|+..|..+          .+..+++.++++++.++..        +..
T Consensus        30 e~i~P~Ll~~Le~a~~~~~e~~~~~~~~~~~~a~~LLaq~----------re~~A~~~li~l~~~~~~~~~~l~GD~~tE   99 (249)
T PF06685_consen   30 EEITPELLKILEDAIERANELLDDEEYNLHFYALYLLAQF----------REERALPPLIRLFSQDDDFLEDLFGDFITE   99 (249)
T ss_pred             HHhhHHHHHHHHHHHHhHHHhccCcchHHHHHHHHHHHHH----------hhhhhHHHHHHHHcCCcchHHHHHcchhHh
Confidence            34577777777542           122233444444443          4567899999999766531        111


Q ss_pred             HHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHH-hcc
Q 017249          170 DAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVET-VED  247 (375)
Q Consensus       170 ~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~l-L~~  247 (375)
                      ....++..           +..|-++.|.+++.++..+.-++.+|+.+|..++. ++..|..++   ..+..++.. +..
T Consensus       100 ~l~~ilas-----------v~~G~~~~L~~li~~~~~~~yvR~aa~~aL~~l~~~~~~~Re~vi---~~f~~ll~~~l~~  165 (249)
T PF06685_consen  100 DLPRILAS-----------VGDGDIEPLKELIEDPDADEYVRMAAISALAFLVHEGPISREEVI---QYFRELLNYFLER  165 (249)
T ss_pred             HHHHHHHH-----------HhCCCHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHcCCCCHHHHH---HHHHHHHHHHhcc
Confidence            12222222           33567888888888877677788889999998886 566677776   366666655 544


Q ss_pred             CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH
Q 017249          248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  283 (375)
Q Consensus       248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~  283 (375)
                      ....+-..-+..++.|....--...+.+.+.|.|+.
T Consensus       166 ~~~~~~~~Lv~~~~dL~~~EL~~~I~~~f~~~lVd~  201 (249)
T PF06685_consen  166 NPSFLWGSLVADICDLYPEELLPEIRKAFEDGLVDP  201 (249)
T ss_pred             CchHHHHHHHHHHHhcCHHHhHHHHHHHHHcCCCCc
Confidence            333333333444444433221123444556777755

The function of this family is unknown.

>PF01347 Vitellogenin_N: Lipoprotein amino terminal region; InterPro: IPR001747 This entry represents a conserved region found in several lipid transport proteins, including vitellogenin, microsomal triglyceride transfer protein and apolipoprotein B-100 []

Probab=85.85  E-value=43  Score=33.96  Aligned_cols=226  Identities=22%  Similarity=0.179  Sum_probs=113.4

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH----HHcC---ChHHHHHhhcCCChHHHHHHHHHHHHhhccCC
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI----ATAG---AIPPLVELLKFQNGTLRELAAAAILTLSAAAP  142 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i----~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~  142 (375)
                      +-.|+..|+.-+.+-......-+..-. .....|..+    ...|   ++..+.+++.+....- ..+...|..+.....
T Consensus       349 f~~Lv~~lr~l~~~~L~~l~~~~~~~~-~~~~~r~~~lDal~~aGT~~av~~i~~~I~~~~~~~-~ea~~~l~~l~~~~~  426 (618)
T PF01347_consen  349 FSRLVRLLRTLSYEDLEELYKQLKSKS-KKEQARKIFLDALPQAGTNPAVKFIKDLIKSKKLTD-DEAAQLLASLPFHVR  426 (618)
T ss_dssp             HHHHHHHHTTS-HHHHHHHHHHHTTS----HHHHHHHHHHHHHH-SHHHHHHHHHHHHTT-S-H-HHHHHHHHHHHHT--
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHhhc-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHhhcC
Confidence            445566666554443333333332221 112333333    3333   3566677776653332 235566666654321


Q ss_pred             ChhHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhcc----CC------CCchhhhhcCCcHHHHHHhhhc--cc
Q 017249          143 NKPAIAASGAAPLLVQILHSG----SVQGRVDAVTALHYLST----CK------ENSSPILDATAVPPLINLLKDC--KK  206 (375)
Q Consensus       143 ~~~~i~~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~----~~------~~~~~i~~~g~i~~Lv~ll~~~--~~  206 (375)
                      .    -....+..+..+++++    ++.+...|+.++..|..    ..      ..+........++.+...+...  ..
T Consensus       427 ~----Pt~e~l~~l~~L~~~~~~~~~~~l~~ta~L~~~~lv~~~c~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~  502 (618)
T PF01347_consen  427 R----PTEELLKELFELAKSPKVKNSPYLRETALLSLGSLVHKYCVNSDSAEFCDPCSRCIIEKYVPYLEQELKEAVSRG  502 (618)
T ss_dssp             -------HHHHHHHHHHHT-HHHHT-HHHHHHHHHHHHHHHHHHHTT-----------SS--GGGTHHHHHHHHHHHHTT
T ss_pred             C----CCHHHHHHHHHHHhCccccCChhHHHHHHHHHHHHhCceeecccccccccccchhhHHHHHHHHHHHHHHHhhcc
Confidence            0    0123456666676543    45667777767666642    21      1122223345677777777632  11


Q ss_pred             chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccC---ChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH
Q 017249          207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG---SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  283 (375)
Q Consensus       207 ~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~---~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~  283 (375)
                      +..-+..++.+|+|+-           ....++.|..++...   +..+|..|+++|..++...+..         +.+.
T Consensus       503 ~~~~~~~~LkaLgN~g-----------~~~~i~~l~~~i~~~~~~~~~~R~~Ai~Alr~~~~~~~~~---------v~~~  562 (618)
T PF01347_consen  503 DEEEKIVYLKALGNLG-----------HPESIPVLLPYIEGKEEVPHFIRVAAIQALRRLAKHCPEK---------VREI  562 (618)
T ss_dssp             -HHHHHHHHHHHHHHT------------GGGHHHHHTTSTTSS-S-HHHHHHHHHTTTTGGGT-HHH---------HHHH
T ss_pred             CHHHHHHHHHHhhccC-----------CchhhHHHHhHhhhccccchHHHHHHHHHHHHHhhcCcHH---------HHHH
Confidence            2234566889999884           345777888888665   5788999999999886665222         3355


Q ss_pred             HHHHhhh--CCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHh
Q 017249          284 LLRLTVE--GTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIA  328 (375)
Q Consensus       284 L~~ll~~--~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~  328 (375)
                      |+.++.+  .++++|-.|..+|-.  .+++     ...+..+...+.
T Consensus       563 l~~I~~n~~e~~EvRiaA~~~lm~--~~P~-----~~~l~~i~~~l~  602 (618)
T PF01347_consen  563 LLPIFMNTTEDPEVRIAAYLILMR--CNPS-----PSVLQRIAQSLW  602 (618)
T ss_dssp             HHHHHH-TTS-HHHHHHHHHHHHH--T--------HHHHHHHHHHHT
T ss_pred             HHHHhcCCCCChhHHHHHHHHHHh--cCCC-----HHHHHHHHHHHh
Confidence            6676664  457777777654433  4342     235555555554

Vitellinogen precursors provide the major egg yolk proteins that are a source of nutrients during early development of oviparous vertebrates and invertebrates. Vitellinogen precursors are multi-domain apolipoproteins that are cleaved into distinct yolk proteins. Different vitellinogen precursors exist, which are composed of variable combinations of yolk protein components; however, the cleavage sites are conserved. In vertebrates, a complete vitellinogen is composed of an N-terminal signal peptide for export, followed by four regions that can be cleaved into yolk proteins: lipovitellin-1, phosvitin, lipovitellin-2, and a von Willebrand factor type D domain (YGP40) [, ]. Microsomal triglyceride transfer protein (MTTP) is an endoplasmic reticulum lipid transfer protein involved in the biosynthesis and lipid loading of apolipoprotein B. MTTP is also involved in the late stage of CD1d trafficking in the lysosomal compartment, CD1d being the MHC I-like lipid antigen presenting molecule []. Apolipoprotein B can exist in two forms: B-100 and B-48. Apoliporotein B-100 is present on several lipoproteins, including very low-density lipoproteins (VLDL), intermediate density lipoproteins (IDL) and low density lipoproteins (LDL), and can assemble VLDL particles in the liver []. Apolipoprotein B-100 has been linked to the development of atherosclerosis.; GO: 0005319 lipid transporter activity, 0006869 lipid transport; PDB: 1LSH_A.

>KOG4464 consensus Signaling protein RIC-8/synembryn (regulates neurotransmitter secretion) [Signal transduction mechanisms]

Probab=85.83  E-value=32  Score=32.50  Aligned_cols=83  Identities=14%  Similarity=0.151  Sum_probs=60.0

Q ss_pred             CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-----CHHHHHHHHHHHHHhhccChhhHHHHH-HcCC
Q 017249           38 DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-----NLDAIESSLLALLNLAVRNERNKVKIA-TAGA  111 (375)
Q Consensus        38 ~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-----~~~~~~~a~~~L~~L~~~~~~~r~~i~-~~g~  111 (375)
                      +.++..+|+++|.|+...+ ...+..+.+......+++++...     .-++...=++.|.-++.-....|.++. +.+|
T Consensus       110 d~~vi~EslKCLcNlvf~S-q~~q~~~~~~~~~~~ll~~v~~~~er~~~~~~~~~dlrLLflltale~~~Rsql~~~l~G  188 (532)
T KOG4464|consen  110 DMHVIMESLKCLCNLVFHS-QRAQDLFLENPLTGKLLQRVLGEFERNFPKDSSIFDLRLLFLLTALETDHRSQLIAELLG  188 (532)
T ss_pred             chHHHHHHHHHHHHHHhcc-HHHHHHHHhhhhHHHHHHHHHHHHHhcCCccchhhHHHHHHHHHHhhHHHHHHHHHHhcc
Confidence            4578899999999999998 88899998888888887776332     123344445555555544556776655 5899


Q ss_pred             hHHHHHhhcC
Q 017249          112 IPPLVELLKF  121 (375)
Q Consensus       112 i~~Lv~lL~~  121 (375)
                      ++.+-..+++
T Consensus       189 l~~lt~~led  198 (532)
T KOG4464|consen  189 LELLTNWLED  198 (532)
T ss_pred             cHHHHHHhhc
Confidence            9999988864

>smart00288 VHS Domain present in VPS-27, Hrs and STAM

Probab=85.71  E-value=3.7  Score=32.43  Aligned_cols=73  Identities=14%  Similarity=0.155  Sum_probs=59.7

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC--HHHHHHHHHHHHHhhc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERARTLLDLLRD  308 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~--~~~~~~A~~~L~~l~~  308 (375)
                      .++..|-.-|.++++.++..|+.+|-.+..+++......+.+.+++..|+.++....  +.+++.+..++..-..
T Consensus        37 ~a~r~l~krl~~~n~~v~l~AL~lLe~~vkNcg~~f~~ev~s~~fl~~L~~l~~~~~~~~~Vk~kil~li~~W~~  111 (133)
T smart00288       37 DAVRLLKKRLNNKNPHVALLALTLLDACVKNCGSKFHLEVASKEFLNELVKLIKPKYPLPLVKKRILELIQEWAD  111 (133)
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHhHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHH
Confidence            356667788889999999999999999999877777888888899999999887542  4489998888776654

Unpublished observations. Domain of unknown function.

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=85.23  E-value=44  Score=33.56  Aligned_cols=209  Identities=18%  Similarity=0.056  Sum_probs=110.6

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh----HHHHHHcC---ChHHHHHhhcCCChHHHHHHHHHHHHhhcc-
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN----KVKIATAG---AIPPLVELLKFQNGTLRELAAAAILTLSAA-  140 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~----r~~i~~~g---~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-  140 (375)
                      .+-.|+.+|+.-+.+-......-+.. ..  ...    .+.+...|   .+..+.+.+.+....- ..++.++..+... 
T Consensus       312 ~f~~lv~~lR~~~~e~l~~l~~~~~~-~~--~~~r~~~~Dal~~~GT~~a~~~i~~~i~~~~~~~-~ea~~~~~~~~~~~  387 (574)
T smart00638      312 KFLRLVRLLRTLSEEQLEQLWRQLYE-KK--KKARRIFLDAVAQAGTPPALKFIKQWIKNKKITP-LEAAQLLAVLPHTA  387 (574)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHh-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCH-HHHHHHHHHHHHhh
Confidence            34556777766665555555444433 11  223    33344433   3556666666653221 1222333332221 


Q ss_pred             CCChhHHHhcCChHHHHHHhccC----CHHHHHHHHHHHHHhcc----CCCCchhhhhcCCcHHHHHHhhhcc--cchHH
Q 017249          141 APNKPAIAASGAAPLLVQILHSG----SVQGRVDAVTALHYLST----CKENSSPILDATAVPPLINLLKDCK--KYSKF  210 (375)
Q Consensus       141 ~~~~~~i~~~~~l~~L~~lL~~~----~~~~~~~a~~~L~~L~~----~~~~~~~i~~~g~i~~Lv~ll~~~~--~~~~~  210 (375)
                      ...     ....++.+.+++.++    +..+...|+.++.+|..    ..+.+...+-...++.+...+....  .+..-
T Consensus       388 ~~P-----t~~~l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~  462 (574)
T smart00638      388 RYP-----TEEILKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCPDFVLEELLKYLHELLQQAVSKGDEEE  462 (574)
T ss_pred             hcC-----CHHHHHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCChhhHHHHHHHHHHHHHHHHhcCCchh
Confidence            110     134567788888764    34566666666666642    2332222222346666666665421  12222


Q ss_pred             HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-c--CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHH
Q 017249          211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-D--GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL  287 (375)
Q Consensus       211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~--~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~l  287 (375)
                      ....+.+|+|+-           ....++.+..++. +  .+..+|..|+++|..++...+..         +-+.|+.+
T Consensus       463 ~~~~LkaLGN~g-----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p~~---------v~~~l~~i  522 (574)
T smart00638      463 IQLYLKALGNAG-----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDPRK---------VQEVLLPI  522 (574)
T ss_pred             eeeHHHhhhccC-----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCchH---------HHHHHHHH
Confidence            345677788774           3455666677775 2  34679999999999887654322         33456665


Q ss_pred             hhh--CCHHHHHHHHHHHHHh
Q 017249          288 TVE--GTFEAQERARTLLDLL  306 (375)
Q Consensus       288 l~~--~~~~~~~~A~~~L~~l  306 (375)
                      +.+  .++++|-.|..+|-.+
T Consensus       523 ~~n~~e~~EvRiaA~~~lm~t  543 (574)
T smart00638      523 YLNRAEPPEVRMAAVLVLMET  543 (574)
T ss_pred             HcCCCCChHHHHHHHHHHHhc
Confidence            554  4677777776655443

>cd03572 ENTH_epsin_related ENTH domain, Epsin Related family; composed of hypothetical proteins containing an ENTH-like domain

Probab=85.07  E-value=4.3  Score=31.44  Aligned_cols=73  Identities=11%  Similarity=0.156  Sum_probs=54.6

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhC--------CHHHHHHHHHHHHHhh
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG--------TFEAQERARTLLDLLR  307 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~--------~~~~~~~A~~~L~~l~  307 (375)
                      +...|..-|.+.++.++..++.+|..+|..+.+..+..+.+ ...|..+.++-...        ...||..|-.++..+-
T Consensus        39 i~d~L~kRL~~~~~hVK~K~Lrilk~l~~~G~~~f~~~~~~~~~~Ik~~~~f~g~~Dp~~Gd~~~~~VR~~A~El~~~if  118 (122)
T cd03572          39 LLEYLLKRLKRSSPHVKLKVLKIIKHLCEKGNSDFKRELQRNSAQIRECANYKGPPDPLKGDSLNEKVREEAQELIKAIF  118 (122)
T ss_pred             HHHHHHHHhcCCCCcchHHHHHHHHHHHhhCCHHHHHHHHHhHHHHHHHHHcCCCCCcccCcchhHHHHHHHHHHHHHHh
Confidence            55677788888889999999999999999887777766665 45666666654422        2568888888888775


Q ss_pred             cC
Q 017249          308 DT  309 (375)
Q Consensus       308 ~~  309 (375)
                      ..
T Consensus       119 ~~  120 (122)
T cd03572         119 SY  120 (122)
T ss_pred             cc
Confidence            43

The epsin N-terminal homology (ENTH) domain is an evolutionarily conserved protein module found primarily in proteins that participate in clathrin-mediated endocytosis. A set of proteins previously designated as harboring an ENTH domain in fact contains a highly similar, yet unique module referred to as an AP180 N-terminal homology (ANTH) domain. ENTH and ANTH (E/ANTH) domains are structurally similar to the VHS domain and are composed of a superhelix of eight alpha helices. E/ANTH domains bind both inositol phospholipids and proteins and contribute to the nucleation and formation of clathrin coats on membranes. ENTH domains also function in the development of membrane curvature through lipid remodeling during the formation of clathrin-coated vesicles. E/ANTH-bearing proteins have recently been shown to function with adaptor protein-1 and GGA adaptors at the t

>PF00790 VHS: VHS domain; InterPro: IPR002014 The VHS domain is a ~140 residues long domain, whose name is derived from its occurrence in VPS-27, Hrs and STAM

Probab=85.07  E-value=4.2  Score=32.36  Aligned_cols=73  Identities=16%  Similarity=0.226  Sum_probs=59.3

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-CHH---HHHHHHHHHHHhhc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFE---AQERARTLLDLLRD  308 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~---~~~~A~~~L~~l~~  308 (375)
                      .++..|-.-|.++++.++..|+.+|..+..++++.....+.+..++..|..++.+. ...   |++.+..++...+.
T Consensus        42 ea~~~l~krl~~~~~~vq~~aL~lld~lvkNcg~~f~~ev~~~~fl~~l~~l~~~~~~~~~~~Vk~k~l~ll~~W~~  118 (140)
T PF00790_consen   42 EAARALRKRLKHGNPNVQLLALTLLDALVKNCGPRFHREVASKEFLDELVKLIKSKKTDPETPVKEKILELLQEWAE  118 (140)
T ss_dssp             HHHHHHHHHHTTSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHHHTTTHHHSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHhHHHHHHHHHHHHccCCCCchhHHHHHHHHHHHHHHH
Confidence            35667778888999999999999999999988777778887888999999988754 333   89999888876654

Based on regions surrounding the domain, VHS-proteins can be divided into 4 groups []: STAM/EAST/Hbp which all share the domain composition VHS-SH3-ITAM and carry one or two ubiquitin-interacting motifs Proteins with a FYVE domain (IPR000306 from INTERPRO) C-terminal to VHS which also carry one or two ubiquitin-interacting motifs GGA proteins with a domain composition VHS-GAT (GGA and Tom1) homology domain VHS domain alone or in combination with domains other than those listed above The VHS domain is always found at the N- terminus of proteins suggesting that such topology is important for function. The domain is considered to have a general membrane targeting/cargo recognition role in vesicular trafficking []. Resolution of the crystal structure of the VHS domain of Drosophila Hrs and human Tom1 revealed that it consists of eight helices arranged in a double-layer superhelix []. The existence of conserved patches of residues on the domain surface suggests that VHS domains may be involved in protein-protein recognition and docking. Overall, sequence similarity is low (approx 25%) amongst domain family members.; GO: 0006886 intracellular protein transport; PDB: 1X5B_A 2L0T_B 1DVP_A 3LDZ_C 3ZYQ_A 4AVX_A 3G2U_A 3G2W_A 1UJJ_A 3G2V_A ....

>PF14225 MOR2-PAG1_C: Cell morphogenesis C-terminal

Probab=83.87  E-value=31  Score=30.75  Aligned_cols=177  Identities=16%  Similarity=0.132  Sum_probs=101.0

Q ss_pred             CChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCC--------hhHHHhcCChHHHHHHhccCC----HHHHHHHHHHH
Q 017249          110 GAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPN--------KPAIAASGAAPLLVQILHSGS----VQGRVDAVTAL  175 (375)
Q Consensus       110 g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~--------~~~i~~~~~l~~L~~lL~~~~----~~~~~~a~~~L  175 (375)
                      |.++-+..++-.+  ++...+.++..|..|...+..        +-.+.-...+|.++.-+.+++    .......+..|
T Consensus        60 ~~f~Glq~Ll~KGL~Ss~t~e~tl~lL~~L~~~~~~~lig~~~~rll~~~la~LP~ll~~~d~~~~i~~~~~~~~~A~~L  139 (262)
T PF14225_consen   60 GNFEGLQPLLLKGLRSSSTYELTLRLLSRLTPLPDDPLIGDSQSRLLFLLLALLPRLLHAFDDPNPIQPDQECIEIAEAL  139 (262)
T ss_pred             CCchhHHHHHhCccCCCCcHHHHHHHHHHHhcCCCccccCCCCccHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHH
Confidence            5566666666444  566677888888888755332        222223456777777777776    13455666777


Q ss_pred             HHhccCCCCchhhhhcCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249          176 HYLSTCKENSSPILDATAVPPLINLLKDCKK--YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST  253 (375)
Q Consensus       176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~  253 (375)
                      ..+|....       .+.+..++.....+..  ..+....++..|+.-. .|+.      +...+..|+++|.++.+.++
T Consensus       140 a~~a~~~~-------~~~La~il~~ya~~~fr~~~dfl~~v~~~l~~~f-~P~~------~~~~l~~Ll~lL~n~~~w~~  205 (262)
T PF14225_consen  140 AQVAEAQG-------LPNLARILSSYAKGRFRDKDDFLSQVVSYLREAF-FPDH------EFQILTFLLGLLENGPPWLR  205 (262)
T ss_pred             HHHHHhCC-------CccHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHh-Cchh------HHHHHHHHHHHHhCCcHHHH
Confidence            77773311       1223333333333322  1122233333333211 1222      12455678899999999999


Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                      ...+.+|..+-...+  .+.. ...+.+.+|.++++++   -...|..+|...
T Consensus       206 ~~~L~iL~~ll~~~d--~~~~-~~~dlispllrlL~t~---~~~eAL~VLd~~  252 (262)
T PF14225_consen  206 RKTLQILKVLLPHVD--MRSP-HGADLISPLLRLLQTD---LWMEALEVLDEI  252 (262)
T ss_pred             HHHHHHHHHHhcccc--CCCC-cchHHHHHHHHHhCCc---cHHHHHHHHHHH
Confidence            999999999877652  2222 3455788888888744   234455555544

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=83.15  E-value=18  Score=35.60  Aligned_cols=122  Identities=21%  Similarity=0.212  Sum_probs=80.2

Q ss_pred             cCChHHHHHh-hCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCCh
Q 017249           67 AGVVQPLVLM-LVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNK  144 (375)
Q Consensus        67 ~g~v~~Lv~~-L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~  144 (375)
                      .|++..|+.. .++.+.+++..|+-+|+-.|.+++.         .++..+++|. +.++-+|...+-+|.-.+.....+
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~~---------~lv~tvelLs~shN~hVR~g~AvaLGiacag~G~~  620 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDRD---------LLVGTVELLSESHNFHVRAGVAVALGIACAGTGDK  620 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCcc---------hhhHHHHHhhhccchhhhhhhHHHhhhhhcCCccH
Confidence            4567777776 6777889999999999998886542         3445566664 457888877777777665543322


Q ss_pred             hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-C-CCCchhhhhcCCcHHHHHHhhhcc
Q 017249          145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-C-KENSSPILDATAVPPLINLLKDCK  205 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~-~~~~~~i~~~g~i~~Lv~ll~~~~  205 (375)
                            -+++.|-.+..+.+.-+++.|+-++.-+.. . ++.-..+  .+.+..+.+++.+..
T Consensus       621 ------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~Kh  675 (926)
T COG5116         621 ------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDKH  675 (926)
T ss_pred             ------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhhh
Confidence                  235666677778888889999888876653 2 2211111  245566666666543

>PF11865 DUF3385: Domain of unknown function (DUF3385); InterPro: IPR024585 This uncharacterised domain is is typically between 160 to 172 amino acids in length

Probab=83.01  E-value=13  Score=30.37  Aligned_cols=145  Identities=17%  Similarity=0.104  Sum_probs=80.9

Q ss_pred             cCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249          150 SGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  228 (375)
Q Consensus       150 ~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~  228 (375)
                      +..++.|+.+|+.+ +..++..++.+|..|-.-++.+......+.-    ....... ......   ..+.+....+. .
T Consensus         9 P~LL~~L~~iLk~e~s~~iR~E~lr~lGilGALDP~~~k~~~~~~~----~~~~~~~-~~~~~~---~~l~~~~~~~~-~   79 (160)
T PF11865_consen    9 PELLDILLNILKTEQSQSIRREALRVLGILGALDPYKHKSIQKSLD----SKSSENS-NDESTD---ISLPMMGISPS-S   79 (160)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHhhhccccCcHHHhcccccCC----ccccccc-cccchh---hHHhhccCCCc-h
Confidence            45677888888877 5789999999999997665554443221111    0000000 111111   11111111111 1


Q ss_pred             HHHhhccCcHHHHHHHhccCC-hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          229 IAITNSDGGILTLVETVEDGS-LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       229 ~~~~~~~g~v~~Lv~lL~~~~-~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                      .... ...++..|+..|++.+ ..-...++.++.++....+..+...+  ..++|.++..++..++..+|.-..-|+.+
T Consensus        80 ee~y-~~vvi~~L~~iL~D~sLs~~h~~vv~ai~~If~~l~~~cv~~L--~~viP~~l~~i~~~~~~~~e~~~~qL~~l  155 (160)
T PF11865_consen   80 EEYY-PTVVINALMRILRDPSLSSHHTAVVQAIMYIFKSLGLKCVPYL--PQVIPIFLRVIRTCPDSLREFYFQQLADL  155 (160)
T ss_pred             HHHH-HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhcCcCchhHH--HHHhHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            1111 2346778888888765 33444667777666644322322222  56899999999988888888766666554

It is found in the phosphatidylinositol kinase-related protein kinases TOR (target of rapamycin). In Saccharomyces cerevisiae the TOR proteins, TOR1 and TOR2, regulate growth in a rapamycin-sensitive manner [].

>smart00638 LPD_N Lipoprotein N-terminal Domain

Probab=82.77  E-value=16  Score=36.75  Aligned_cols=131  Identities=21%  Similarity=0.152  Sum_probs=76.1

Q ss_pred             hHHHHHhhCCC----CHHHHHHHHHHHHHhhcc----ChhhHHHHHHcCChHHHHHhhcC----CChHHHHHHHHHHHHh
Q 017249           70 VQPLVLMLVSP----NLDAIESSLLALLNLAVR----NERNKVKIATAGAIPPLVELLKF----QNGTLRELAAAAILTL  137 (375)
Q Consensus        70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~----~~~~r~~i~~~g~i~~Lv~lL~~----~~~~~~~~a~~~L~~L  137 (375)
                      +..+.+++.++    .+.++..++-+++.+...    .+.+. ..+....++.|...|..    .+.+-+...+.+|.|+
T Consensus       395 l~~l~~l~~~~~~~~~~~l~~sa~l~~~~lv~~~c~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~  473 (574)
T smart00638      395 LKALFELAESPEVQKQPYLRESALLAYGSLVRRYCVNTPSCP-DFVLEELLKYLHELLQQAVSKGDEEEIQLYLKALGNA  473 (574)
T ss_pred             HHHHHHHhcCccccccHHHHHHHHHHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHHHHHHHHhcCCchheeeHHHhhhcc
Confidence            56666777653    355666666666666531    11111 11223355666665532    3444556677778877


Q ss_pred             hccCCChhHHHhcCChHHHHHHhc-cC--CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHH
Q 017249          138 SAAAPNKPAIAASGAAPLLVQILH-SG--SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKA  214 (375)
Q Consensus       138 s~~~~~~~~i~~~~~l~~L~~lL~-~~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a  214 (375)
                      .          ....++.|...+. ..  +..++..|+++|..++....       ..+-+.|+.++.+...+..++..|
T Consensus       474 g----------~~~~i~~l~~~l~~~~~~~~~iR~~Av~Alr~~a~~~p-------~~v~~~l~~i~~n~~e~~EvRiaA  536 (574)
T smart00638      474 G----------HPSSIKVLEPYLEGAEPLSTFIRLAAILALRNLAKRDP-------RKVQEVLLPIYLNRAEPPEVRMAA  536 (574)
T ss_pred             C----------ChhHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHHHhCc-------hHHHHHHHHHHcCCCCChHHHHHH
Confidence            3          3455666776665 22  46789999999998874321       124456777777766666777555


Q ss_pred             HHHH
Q 017249          215 TALL  218 (375)
Q Consensus       215 ~~~L  218 (375)
                      ..+|
T Consensus       537 ~~~l  540 (574)
T smart00638      537 VLVL  540 (574)
T ss_pred             HHHH
Confidence            4433

>COG5116 RPN2 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=82.26  E-value=17  Score=35.76  Aligned_cols=124  Identities=17%  Similarity=0.170  Sum_probs=76.3

Q ss_pred             cCChHHHHHH-hccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh
Q 017249          150 SGAAPLLVQI-LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR  228 (375)
Q Consensus       150 ~~~l~~L~~l-L~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~  228 (375)
                      .+++..|++. ..+.+..+++.|.-+|.-+|..+.        ..++..+++|..+. +..++....-+|+..|...-.+
T Consensus       550 ~~vv~~lLh~avsD~nDDVrRAAViAlGfvc~~D~--------~~lv~tvelLs~sh-N~hVR~g~AvaLGiacag~G~~  620 (926)
T COG5116         550 LGVVSTLLHYAVSDGNDDVRRAAVIALGFVCCDDR--------DLLVGTVELLSESH-NFHVRAGVAVALGIACAGTGDK  620 (926)
T ss_pred             chhHhhhheeecccCchHHHHHHHHheeeeEecCc--------chhhHHHHHhhhcc-chhhhhhhHHHhhhhhcCCccH
Confidence            4566777776 677788999999999888775432        35556667776643 4455554555565444432211


Q ss_pred             HHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC
Q 017249          229 IAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG  291 (375)
Q Consensus       229 ~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~  291 (375)
                             -+++.|-.+..+..+-+|+.|+.++..+...++++.-..+  .++...+.+++.+.
T Consensus       621 -------~a~diL~~L~~D~~dfVRQ~AmIa~~mIl~Q~n~~Lnp~v--~~I~k~f~~vI~~K  674 (926)
T COG5116         621 -------VATDILEALMYDTNDFVRQSAMIAVGMILMQCNPELNPNV--KRIIKKFNRVIVDK  674 (926)
T ss_pred             -------HHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhcCcccChhH--HHHHHHHHHHHhhh
Confidence                   2344555666788888999999888877665544322211  34555566655543

>KOG1848 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.13  E-value=20  Score=38.99  Aligned_cols=99  Identities=11%  Similarity=0.047  Sum_probs=51.1

Q ss_pred             CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----cC---CHHHHHHHHHHHHHhccCC-CCchhhhhcC
Q 017249          121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----SG---SVQGRVDAVTALHYLSTCK-ENSSPILDAT  192 (375)
Q Consensus       121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----~~---~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g  192 (375)
                      ++..+++.....++.++...+.....   .| .+-+.++++    ..   ...+.+.+..+|.-++.+- .....=.-.+
T Consensus       853 ~~~~evr~~sl~~l~silet~ge~ll---~~-w~sV~eml~s~~d~~~ekek~ivrlgf~~lrlIssDfLqSLp~sci~~  928 (1610)
T KOG1848|consen  853 SRGVEVRISSLEALVSILETVGEHLL---HG-WQSVFEMLRSATDFGSEKEKKIVRLGFSCLRLISSDFLQSLPTSCILD  928 (1610)
T ss_pred             CccceeeHHHHHHHHHHHhccchhhc---cc-cHHHHHHHHHHhhccchhhhhHHHhhhhhhhhhhhcchhcCChHHHHH
Confidence            34567777778888887665432211   12 444445443    22   2345566666666655441 1111111124


Q ss_pred             CcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          193 AVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      .+..++...+... +..+...|.+.+++++..
T Consensus       929 lidtl~~fs~Qkt-dlNISltAi~lfWtvsDf  959 (1610)
T KOG1848|consen  929 LIDTLLVFSRQKT-DLNISLTAIGLFWTVSDF  959 (1610)
T ss_pred             HHHHHHHHHhhhc-cccccHHHHHHHHHHHHH
Confidence            5555655554432 335556677777777644

>PF04821 TIMELESS: Timeless protein; InterPro: IPR006906 The timeless gene in Drosophila melanogaster (Fruit fly) and its homologues in a number of other insects and mammals (including human) are involved in circadian rhythm control []

Probab=81.57  E-value=39  Score=30.21  Aligned_cols=128  Identities=15%  Similarity=0.125  Sum_probs=65.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      -+.++.|.++|+.+|+..+ ...+.++.   .+       +++.+.+|.|+..=  ++.++...+++.|.+|+.  |.. 
T Consensus        12 l~~LkdL~r~lr~dd~~~~-~v~r~lg~---~~-------iv~~DLiPiL~~~~--~~~~l~~~~l~LLV~LT~--P~~-   75 (266)
T PF04821_consen   12 LECLKDLKRFLRRDDEDQR-DVRRQLGE---WN-------IVQKDLIPILISYK--DDDKLFLACLRLLVNLTW--PIE-   75 (266)
T ss_pred             HHHHHHHHHHHHHhCcchH-HHHHHHHH---hc-------hhhhhHHHHHHhcc--CchHHHHHHHHHHHHhCC--CHH-
Confidence            4566777777776666554 33333222   12       33334444443332  267889999999999996  211 


Q ss_pred             HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-----------CCHHHHHH
Q 017249          104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-----------GSVQGRVD  170 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-----------~~~~~~~~  170 (375)
                                .+   .+..  +...+.........+.   ..|..|...+.+..++..+..           .+..+.+.
T Consensus        76 ----------~~---~~~~~~~~~~~~~~~~l~~~l~---~yK~afl~~~~l~~~~~~l~~~l~~~~~~rt~~d~~ii~l  139 (266)
T PF04821_consen   76 ----------LL---VESQPKDKNQRRNIPELLKYLQ---SYKEAFLDPRVLKALIRLLLPPLEKDWEDRTERDNLIIEL  139 (266)
T ss_pred             ----------Hh---ccCCCCChHHHHHHHHHHHHHH---HHHHHHcccHHHHHHHHHHhHHhhcccccCCHHHHHHHHH
Confidence                      11   1111  2222222222222221   224555555666655554421           13456788


Q ss_pred             HHHHHHHhccCCC
Q 017249          171 AVTALHYLSTCKE  183 (375)
Q Consensus       171 a~~~L~~L~~~~~  183 (375)
                      .+..+.|+..-++
T Consensus       140 vL~LiRNlL~Ip~  152 (266)
T PF04821_consen  140 VLTLIRNLLAIPD  152 (266)
T ss_pred             HHHHHHHHhcCCC
Confidence            8888888876543

This family includes related proteins from a number of fungal species and from Arabidopsis thaliana.

>PF10521 DUF2454: Protein of unknown function (DUF2454); InterPro: IPR018870 Putative protein of unknown function; subunit of the ASTRA complex which is part of the chromatin remodeling machinery; similar to Schizosaccharomyces pombe (Fission yeast) Tti2p; may interact with Rsm23p []

Probab=81.44  E-value=24  Score=31.83  Aligned_cols=71  Identities=20%  Similarity=0.264  Sum_probs=51.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHH----HHHhhC--------CCCHHHHHHHHHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQP----LVLMLV--------SPNLDAIESSLLAL   92 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~----Lv~~L~--------~~~~~~~~~a~~~L   92 (375)
                      .+|.++.++.+.+++.|..++.++..+.... +... ..+.+.|..+.    |..+|.        .++..+...+.-+|
T Consensus       120 iiP~iL~llDD~~~~~K~~G~~lL~~ll~~~-~~~~~~~L~~tGl~~v~~~al~~~L~~LP~~tp~~~s~~Ll~~ay~~L  198 (282)
T PF10521_consen  120 IIPPILNLLDDYSPEIKIQGCQLLHHLLEKV-PAAEWDILRRTGLFSVFEDALFPCLYYLPPITPEDESLELLQAAYPAL  198 (282)
T ss_pred             HHhhHHHHhcCCCHHHHHHHHHHHHHHHHhC-ChhhhHHHHHcChHHHHHHHHHHHhhcCCCCCCchhhHHHHHHHHHHH
Confidence            4788888888889999999999999999877 3222 34666775554    344554        34566777888888


Q ss_pred             HHhhc
Q 017249           93 LNLAV   97 (375)
Q Consensus        93 ~~L~~   97 (375)
                      ..|+.
T Consensus       199 ~~L~~  203 (282)
T PF10521_consen  199 LSLLK  203 (282)
T ss_pred             HHHHH
Confidence            88743

>PF14500 MMS19_N: Dos2-interacting transcription regulator of RNA-Pol-II

Probab=80.88  E-value=41  Score=30.01  Aligned_cols=218  Identities=12%  Similarity=0.059  Sum_probs=124.1

Q ss_pred             HHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC--CCHHHHHHHHHHHHHhhccChhhHHHHHHc
Q 017249           32 DKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS--PNLDAIESSLLALLNLAVRNERNKVKIATA  109 (375)
Q Consensus        32 ~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~--~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~  109 (375)
                      ..|.++++..+..|+..|......- +...  + ...-+..|+++..+  .|......++..+..|.....-....  ..
T Consensus         6 ~~Ltsed~~~R~ka~~~Ls~vL~~l-p~~~--L-~~~ev~~L~~F~~~rl~D~~~~~~~l~gl~~L~~~~~~~~~~--~~   79 (262)
T PF14500_consen    6 EYLTSEDPIIRAKALELLSEVLERL-PPDF--L-SRQEVQVLLDFFCSRLDDHACVQPALKGLLALVKMKNFSPES--AV   79 (262)
T ss_pred             hhhCCCCHHHHHHHHHHHHHHHHhC-CHhh--c-cHHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHhCcCCChhh--HH
Confidence            4567899999999999999988777 2211  1 11124555555432  35555656677777766432211111  11


Q ss_pred             CChHHHHHhhc--CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccCCCCch
Q 017249          110 GAIPPLVELLK--FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSS  186 (375)
Q Consensus       110 g~i~~Lv~lL~--~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~~~~~~  186 (375)
                      ..+..+.+-..  +-....|..+...+..+..+....-.-.....+..+++.+..+ ||+-...+...+..+...-+.  
T Consensus        80 ~i~~~l~~~~~~q~~~q~~R~~~~~ll~~l~~~~~~~l~~~~~~fv~~~i~~~~gEkDPRnLl~~F~l~~~i~~~~~~--  157 (262)
T PF14500_consen   80 KILRSLFQNVDVQSLPQSTRYAVYQLLDSLLENHREALQSMGDDFVYGFIQLIDGEKDPRNLLLSFKLLKVILQEFDI--  157 (262)
T ss_pred             HHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHhHHHHHhchhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccc--
Confidence            11222332221  1245667788888888765532111112345777888888776 788788888777777644331  


Q ss_pred             hhhhcCCcHHHHHHhhhc--------ccc--hHHHHHHHHHH-HHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          187 PILDATAVPPLINLLKDC--------KKY--SKFAEKATALL-EILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       187 ~i~~~g~i~~Lv~ll~~~--------~~~--~~~~~~a~~~L-~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                          ....+.+.+.+...        ..+  ....+.-...| ..|+.++.-.      .-+++.|++-|.++.+.++..
T Consensus       158 ----~~~~e~lFd~~~cYFPI~F~pp~~dp~~IT~edLk~~L~~cl~s~~~fa------~~~~p~LleKL~s~~~~~K~D  227 (262)
T PF14500_consen  158 ----SEFAEDLFDVFSCYFPITFRPPPNDPYGITREDLKRALRNCLSSTPLFA------PFAFPLLLEKLDSTSPSVKLD  227 (262)
T ss_pred             ----chhHHHHHHHhhheeeeeeeCCCCCCCCCCHHHHHHHHHHHhcCcHhhH------HHHHHHHHHHHcCCCcHHHHH
Confidence                33444555554421        111  11222223333 3455444321      357888999999999999999


Q ss_pred             HHHHHHHhcccC
Q 017249          256 AVGALLSLCQSC  267 (375)
Q Consensus       256 a~~~L~~l~~~~  267 (375)
                      ++.+|..++..-
T Consensus       228 ~L~tL~~c~~~y  239 (262)
T PF14500_consen  228 SLQTLKACIENY  239 (262)
T ss_pred             HHHHHHHHHHHC
Confidence            999998876543

>PF11791 Aconitase_B_N: Aconitate B N-terminal domain; InterPro: IPR015933 Aconitase (aconitate hydratase; 4

Probab=80.31  E-value=3  Score=33.31  Aligned_cols=42  Identities=26%  Similarity=0.275  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249           85 IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL  137 (375)
Q Consensus        85 ~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  137 (375)
                      ...|+..|+.+-++-           -|++|+.+|.+.++++...|+.+|.+-
T Consensus        80 ~~~Av~LLGtM~GGY-----------NV~~LI~~L~~~d~~lA~~Aa~aLk~T  121 (154)
T PF11791_consen   80 PAEAVELLGTMLGGY-----------NVQPLIDLLKSDDEELAEEAAEALKNT  121 (154)
T ss_dssp             HHHHHHHHTTS-SST-----------THHHHHHGG--G-TTTHHHHHHHHHT-
T ss_pred             HHHHHHHHhhccCCC-----------cHHHHHHHHcCCcHHHHHHHHHHHHhh
Confidence            555666666655532           278999999988899999999998874

2.1.3 from EC) is an iron-sulphur protein that contains a [4Fe-4S]-cluster and catalyses the interconversion of isocitrate and citrate via a cis-aconitate intermediate. Aconitase functions in both the TCA and glyoxylate cycles, however unlike the majority of iron-sulphur proteins that function as electron carriers, the [4Fe-4S]-cluster of aconitase reacts directly with an enzyme substrate. In eukaryotes there is a cytosolic form (cAcn) and a mitochondrial form (mAcn) of the enzyme. In bacteria there are also 2 forms, aconitase A (AcnA) and B (AcnB). Several aconitases are known to be multi-functional enzymes with a second non-catalytic, but essential function that arises when the cellular environment changes, such as when iron levels drop [, ]. Eukaryotic cAcn and mAcn, and bacterial AcnA have the same domain organisation, consisting of three N-terminal alpha/beta/alpha domains, a linker region, followed by a C-terminal 'swivel' domain with a beta/beta/alpha structure (1-2-3-linker-4), although mAcn is small than cAcn. However, bacterial AcnB has a different organisation: it contains an N-terminal HEAT-like domain, followed by the 'swivel' domain, then the three alpha/beta/alpha domains (HEAT-4-1-2-3) []. Below is a description of some of the multi-functional activities associated with different aconitases. Eukaryotic mAcn catalyses the second step of the mitochondrial TCA cycle, which is important for energy production, providing high energy electrons in the form of NADH and FADH2 to the mitochondrial oxidative phosphorylation pathway []. The TCA cycle also provides precursors for haem and amino acid production. This enzyme has a second, non-catalytic but essential role in mitochondrial DNA (mtDNA) maintenance: mAcn acts to stabilise mtDNA, forming part of mtDNA protein-DNA complexes known as nucleoids. mAcn is thought to reversibly model nucleoids to directly influence mitochondrial gene expression in response to changes in the cellular environment. Therefore, mAcn can influence the expression of components of the oxidative phosphorylation pathway encoded in mtDNA. Eukaryotic cAcn enzyme balances the amount of citrate and isocitrate in the cytoplasm, which in turn creates a balance between the amount of NADPH generated from isocitrate by isocitrate dehydrogenase with the amount of acetyl-CoA generated from citrate by citrate lyase. Fatty acid synthesis requires both NADPH and acetyl-CoA, as do other metabolic processes, including the need for NADPH to combat oxidative stress. The enzymatic form of cAcn predominates when iron levels are normal, but if they drop sufficiently to cause the disassembly of the [4Fe-4S]-cluster, then cAcn undergoes a conformational change from a compact enzyme to a more open L-shaped protein known as iron regulatory protein 1 (IRP1; or IRE-binding protein 1, IREBP1) [, ]. As IRP1, the catalytic site and the [4Fe-4S]-cluster are lost, and two new RNA-binding sites appear. IRP1 functions in the post-transcriptional regulation of genes involved in iron metabolism - it binds to mRNA iron-responsive elements (IRE), 30-nucleotide stem-loop structures at the 3' or 5' end of specific transcripts. Transcripts containing an IRE include ferritin L and H subunits (iron storage), transferrin (iron plasma chaperone), transferrin receptor (iron uptake into cells), ferroportin (iron exporter), mAcn, succinate dehydrogenase, erythroid aminolevulinic acid synthetase (tetrapyrrole biosynthesis), among others. If the IRE is in the 5'-UTR of the transcript (e.g. in ferritin mRNA), then IRP1-binding prevents its translation by blocking the transcript from binding to the ribosome. If the IRE is in the 3'-UTR of the transcript (e.g. transferrin receptor), then IRP1-binding protects it from endonuclease degradation, thereby prolonging the half-life of the transcript and enabling it to be translated []. IRP2 is another IRE-binding protein that binds to the same transcripts as IRP1. However, since IRP1 is predominantly in the enzymatic cAcn form, it is IRP2 that acts as the major metabolic regulator that maintains iron homeostasis []. Although IRP2 is homologous to IRP1, IRP2 lacks aconitase activity, and is known only to have a single function in the post-transcriptional regulation of iron metabolism genes []. In iron-replete cells, IRP2 activity is regulated primarily by iron-dependent degradation through the ubiquitin-proteasomal system. Bacterial AcnB is also known to be multi-functional. In addition to its role in the TCA cycle, AcnB was shown to be a post-transcriptional regulator of gene expression in Escherichia coli and Salmonella enterica [, ]. In S. enterica, AcnB initiates a regulatory cascade controlling flagella biosynthesis through an interaction with the ftsH transcript, an alternative RNA polymerase sigma factor. This binding lowers the intracellular concentration of FtsH protease, which in turn enhances the amount of RNA polymerase sigma32 factor (normally degraded by FtsH protease), and sigma32 then increases the synthesis of chaperone DnaK, which in turn promotes the synthesis of the flagellar protein FliC. AcnB regulates the synthesis of other proteins as well, such as superoxide dismutase (SodA) and other enzymes involved in oxidative stress. This entry represents the N-terminal HEAT-like domain, which is present in bacterial aconitase (AcnB), but not in AcnA or eukaryotic cAcn/IRP2 or mAcn. This domain is multi-helical, forming two curved layers in a right-handed alpha-alpha superhelix. HEAT-like domains are usually implicated in protein-protein interactions. The HEAT-like domain and the 'swivel' domain that follows it were shown to be sufficient for dimerisation and for AcnB binding to mRNA. An iron-mediated dimerisation mechanism may be responsible for switching AcnB between its catalytic and regulatory roles, as dimerisation requires iron while mRNA binding is inhibited by iron. More information about these proteins can be found at Protein of the Month: Aconitase [].; GO: 0003994 aconitate hydratase activity, 0006099 tricarboxylic acid cycle; PDB: 1L5J_B.

>KOG1566 consensus Conserved protein Mo25 [Function unknown]

Probab=80.17  E-value=47  Score=30.25  Aligned_cols=156  Identities=12%  Similarity=0.175  Sum_probs=111.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      .+.+..||.--.. .++.-..+-..+.....+.  ...+.+....-......+...+.-++...|..+...+.......-
T Consensus       125 ~e~~~~lv~~~~~-~~~iaL~cg~mlrEcirhe--~LakiiL~s~~~~~FF~~vq~p~FdiasdA~~tfK~llt~Hk~~v  201 (342)
T KOG1566|consen  125 PEILDNLVKGYEN-TPEIALTCGNMLRECIRHE--FLAKIILESTNFEKFFLYVQLPNFDIASDAFSTFKELLTRHKSVV  201 (342)
T ss_pred             HHHHHHHHhhhcc-chHHHHHHHHHHHHHHhhH--HHHHHHHcchhHHHHHHHHhccchHHHHHHHHHHHHHHHHhHHHH
Confidence            3444444444112 4666666666777776665  666667777777888888888888888888888888776443333


Q ss_pred             HHHHHcC---ChH-HHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH----HhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249          104 VKIATAG---AIP-PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI----AASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus       104 ~~i~~~g---~i~-~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i----~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      ..+....   .++ .--.++++.+--.+..+..+|..+-.+.+|...+    .....+..+..+|+.++..++..|....
T Consensus       202 aEfl~~n~d~ff~e~~~~Ll~s~Nyvtkrqs~kllg~llldr~N~~~M~kYiss~enLKlmM~llrdkskniQ~eAFhvF  281 (342)
T KOG1566|consen  202 AEFLIRNYDNFFAEVYEKLLRSENYVTKRQSLKLLGELLLDRSNSAVMTKYISSPENLKLMMNLLRDKSKNIQLEAFHVF  281 (342)
T ss_pred             HHHHHhChhhhHHHHHHHHhcccceehHHHHHHhHHHHHhCCCcHHHHHHHhcCHHHHHHHHHHhhCccccchHHHHHHH
Confidence            3343322   223 3556778889889999999999999888875544    4567899999999999999999999988


Q ss_pred             HHhccCC
Q 017249          176 HYLSTCK  182 (375)
Q Consensus       176 ~~L~~~~  182 (375)
                      +-...++
T Consensus       282 KvfvAnp  288 (342)
T KOG1566|consen  282 KVFVANP  288 (342)
T ss_pred             HHHhcCC
Confidence            8766553

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	375
4db8_A	252	Designed Armadillo-Repeat Protein Length = 252		3e-06
4dba_A	210	Designed Armadillo Repeat Protein (Yiim3aii) Length		6e-04

>pdb|4DB8|A Chain A, Designed Armadillo-Repeat Protein Length = 252

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 53/205 (25%), Positives = 91/205 (44%), Gaps = 4/205 (1%)
Query: 29  ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
           +++ +L + D++ ++ A R   +++   + + ++    AG +  LV +L SPN   ++ +
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEA 74
Query: 89  LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLREXXXXXXXXXXXXXXXXXXX 147
           L AL N+A         +  AGA+P LV+LL   N   L+E                   
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAV 134
Query: 148 XXXXXXXLLVQILHSGSVQGRVDAVTALHYL-STCKENSSPILDATAVPPLINLLKDCKK 206
                   LVQ+L S + Q   +A+ AL  + S   E    ++DA A+P L+ LL    +
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194
Query: 207 YSKFAEKATALLEILSSSEEGRIAI 231
                E   AL  I S   E + A+
Sbjct: 195 Q-ILQEALWALSNIASGGNEQKQAV 218

>pdb|4DBA|A Chain A, Designed Armadillo Repeat Protein (Yiim3aii) Length = 210

Iteration: 1
 Score = 42.0 bits (97), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 51/95 (53%), Gaps = 1/95 (1%)
Query: 29  ELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESS 88
           +++ +L + D++ ++ A R   +++   + + ++    AG +  LV +L SPN   ++ +
Sbjct: 16  QMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQA-VIDAGALPALVQLLSSPNEQILQEA 74
Query: 89  LLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN 123
           L AL N+A         +  AGA+P LV+LL   N
Sbjct: 75  LWALSNIASGGNEQIQAVIDAGALPALVQLLSSPN 109

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	375
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	2e-44
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-25
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	6e-18
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	9e-14
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-39
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	2e-38
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	3e-33
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	1e-26
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	5e-21
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-38
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-32
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	3e-26
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	2e-22
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	1e-17
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	2e-38
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	1e-19
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	5e-38
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-34
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	7e-26
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	3e-18
3nmz_A	458	APC variant protein; protein-protein complex, arma	1e-35
3nmz_A	458	APC variant protein; protein-protein complex, arma	8e-30
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-25
3nmz_A	458	APC variant protein; protein-protein complex, arma	3e-18
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	3e-35
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	1e-28
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	7e-28
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	8e-33
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-27
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-26
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-21
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	2e-16
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-08
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	1e-04
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	5e-31
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-29
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-18
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	3e-16
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	1e-05
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	9e-05
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	9e-31
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	5e-25
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-20
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-18
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	1e-11
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	2e-08
3oqs_A	510	Importin subunit alpha-2; importin alpha, karyophe	3e-07
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	3e-25
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-21
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	2e-11
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	1e-08
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	3e-23
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	6e-18
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	9e-16
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	5e-11
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	4e-22
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	1e-20
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	3e-06
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-18
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	1e-17
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	6e-15
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	2e-04
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	1e-17
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-16
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	4e-15
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	2e-07
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	4e-09
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	8e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-05
3grl_A	651	General vesicular transport factor P115; vesicle t	5e-06
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	3e-04
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	3e-04
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	8e-04

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  152 bits (387), Expect = 2e-44
 Identities = 62/243 (25%), Positives = 114/243 (46%), Gaps = 5/243 (2%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
            + + +++ +L + D++ ++ A R   +++   + +       AG +  LV +L SPN  
Sbjct: 11  GSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQ-IQAVIDAGALPALVQLLSSPNEQ 69

Query: 84  AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP- 142
            ++ +L AL N+A         +  AGA+P LV+LL   N  + + A  A+  +++    
Sbjct: 70  ILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNE 129

Query: 143 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLL 201
              A+  +GA P LVQ+L S + Q   +A+ AL  +++   E    ++DA A+P L+ LL
Sbjct: 130 QIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLL 189

Query: 202 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261
               +     E   AL  I S   E + A+  + G +  L +     +    + A  AL 
Sbjct: 190 SSPNEQIL-QEALWALSNIASGGNEQKQAVKEA-GALEKLEQLQSHENEKIQKEAQEALE 247

Query: 262 SLC 264
            L 
Sbjct: 248 KLQ 250

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score =  100 bits (251), Expect = 9e-25
 Identities = 47/230 (20%), Positives = 98/230 (42%), Gaps = 8/230 (3%)

Query: 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQ 158
             +         +P + + L   +   +  A      + +       A+  +GA P LVQ
Sbjct: 2   RGSHHHHHHGSELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQ 61

Query: 159 ILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL 217
           +L S + Q   +A+ AL  +++   E    ++DA A+P L+ LL    +  +  ++A   
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE--QILQEALWA 119

Query: 218 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 277
           L  ++S    +I      G +  LV+ +   +    Q A+ AL ++     ++  Q ++ 
Sbjct: 120 LSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-IQAVID 178

Query: 278 EGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL--SSSVLEKIV 324
            GA+P L++L      +  + A   L ++     ++K+    +  LEK+ 
Sbjct: 179 AGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLE 228

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 81.6 bits (202), Expect = 6e-18
 Identities = 34/117 (29%), Positives = 57/117 (48%), Gaps = 1/117 (0%)

Query: 65  AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNG 124
             AG +  LV +L SPN   ++ +L AL N+A         +  AGA+P LV+LL   N 
Sbjct: 135 IDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNE 194

Query: 125 TLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180
            + + A  A+  +++     K A+  +GA   L Q+    + + + +A  AL  L +
Sbjct: 195 QILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct} Length = 252

 Score = 69.6 bits (171), Expect = 9e-14
 Identities = 27/114 (23%), Positives = 50/114 (43%), Gaps = 1/114 (0%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAI 85
            +  L   L + + +   EA   +  +    + +       AG +  LV +L SPN   +
Sbjct: 139 ALPALVQLLSSPNEQILQEALWALSNIASGGN-EQIQAVIDAGALPALVQLLSSPNEQIL 197

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA 139
           + +L AL N+A      K  +  AGA+  L +L   +N  +++ A  A+  L +
Sbjct: 198 QEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALEKLQS 251

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  144 bits (366), Expect = 5e-39
 Identities = 64/306 (20%), Positives = 114/306 (37%), Gaps = 14/306 (4%)

Query: 22  RKQALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP 80
           R   ++  +   + N  D+ET    A  +  +              +G +  LV ML SP
Sbjct: 56  RSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGGIPALVKMLGSP 113

Query: 81  NLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA 140
               +  ++  L NL +  E  K+ +  AG +  +V LL   N     +    +  L+  
Sbjct: 114 VDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYG 173

Query: 141 -APNKPAIAASGAAPLLVQILHSGSVQG-RVDAVTALHYLSTCKENSSPILDATAVPPLI 198
              +K  I ASG    LV I+ + + +         L  LS C  N   I++A  +  L 
Sbjct: 174 NQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALG 233

Query: 199 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258
             L D     +  +     L  LS +   +  +   +G + TLV+ +    +     A G
Sbjct: 234 LHLTDPS--QRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSDDINVVTCAAG 288

Query: 259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERA-RTLLDLLRDTPQEKRL 315
            L +L      K + ++ + G I  L+R  +      +  E A   L  L     + +  
Sbjct: 289 ILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMA 347

Query: 316 SSSVLE 321
            ++V  
Sbjct: 348 QNAVRL 353

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  143 bits (362), Expect = 2e-38
 Identities = 60/293 (20%), Positives = 121/293 (41%), Gaps = 12/293 (4%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN-LDAI 85
           I EL+  L + D     +AA  + ++ KK + +  +   +  +V  +V  + + N ++  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NK 144
             +   L NL+  +    + I  +G IP LV++L     ++   A   +  L       K
Sbjct: 78  RCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKD 203
            A+  +G    +V +L+  +V+        L  L+   +E+   IL +     L+N+++ 
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 204 CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
              Y K     + +L++LS     + AI  + GG+  L   + D S    Q+ +  L +L
Sbjct: 197 -YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA-GGMQALGLHLTDPSQRLVQNCLWTLRNL 254

Query: 264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 315
             +   +       EG +  L++L           A   L +L  +  + K +
Sbjct: 255 SDAATKQ----EGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMM 303

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  129 bits (327), Expect = 1e-33
 Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 7/263 (2%)

Query: 65  AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QN 123
            A   +  L  +L   +   +  + + +  L+ +       + +   +  +V  ++   +
Sbjct: 14  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 73

Query: 124 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183
                  A  +  LS       AI  SG  P LV++L S        A+T LH L   +E
Sbjct: 74  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 133

Query: 184 NSSP-ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-SSEEGRIAITNSDGGILTL 241
            +   +  A  +  ++ LL       KF    T  L+IL+  ++E ++ I  S GG   L
Sbjct: 134 GAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQAL 190

Query: 242 VETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART 301
           V  +   +          +L +   C    +  I++ G +  L     + +    +    
Sbjct: 191 VNIMRTYTYEKLLWTTSRVLKVLSVCSS-NKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 249

Query: 302 LLDLLRDTPQEKRLSSSVLEKIV 324
            L  L D   ++     +L  +V
Sbjct: 250 TLRNLSDAATKQEGMEGLLGTLV 272

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  128 bits (324), Expect = 3e-33
 Identities = 62/300 (20%), Positives = 104/300 (34%), Gaps = 34/300 (11%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           ++ L   L +            +R +    S     +    G++  LV +L S +++ + 
Sbjct: 229 MQALGLHLTDPSQRLVQNCLWTLRNL----SDAATKQEGMEGLLGTLVQLLGSDDINVVT 284

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT--LRELAAAAILTLSAAAPNK 144
            +   L NL   N +NK+ +   G I  LV  +        + E A  A+  L++     
Sbjct: 285 CAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEA 344

Query: 145 P----AIAASGAAPLLVQILHSGSVQGRVDAVTAL-HYLSTCKENSSPILDATAVPPLIN 199
                A+      P++V++LH  S    + A   L   L+ C  N +P+ +  A+P L+ 
Sbjct: 345 EMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ 404

Query: 200 LLKDC--------------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 239
           LL                        +  +  E  T  L IL+     RI I      I 
Sbjct: 405 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGL-NTIP 463

Query: 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
             V+ +        + A G L  L Q    +  + I  EGA   L  L           A
Sbjct: 464 LFVQLLYSPIENIQRVAAGVLCELAQD--KEAAEAIEAEGATAPLTELLHSRNEGVATYA 521

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score =  109 bits (275), Expect = 1e-26
 Identities = 48/227 (21%), Positives = 88/227 (38%), Gaps = 9/227 (3%)

Query: 91  ALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 150
           A++NL   N ++        AIP L +LL  ++  +   AA  +  LS    ++ AI  S
Sbjct: 1   AVVNLI--NYQDD-AELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRS 57

Query: 151 GAA-PLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYS 208
                 +V+ + ++  V+        LH LS  +E    I  +  +P L+ +L       
Sbjct: 58  PQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSV 117

Query: 209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR 268
            F    T L  +L   E  ++A+  + GG+  +V  +   ++         L  L     
Sbjct: 118 LF-YAITTLHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGN- 174

Query: 269 DKYRQLILKEGAIPGLLRLTVEGTFEA-QERARTLLDLLRDTPQEKR 314
            + + +IL  G    L+ +    T+E        +L +L      K 
Sbjct: 175 QESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 221

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A Length = 529

 Score = 93.7 bits (233), Expect = 5e-21
 Identities = 44/223 (19%), Positives = 76/223 (34%), Gaps = 28/223 (12%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSL--KTRSEFAAAGVVQPLVLMLVSPN 81
           +AL+  +         +    A   +R +  +       ++       +  +V +L  P+
Sbjct: 311 EALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 368

Query: 82  LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK--------------------- 120
              +  + + L+        N   +   GAIP LV+LL                      
Sbjct: 369 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 428

Query: 121 -FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179
             +   + E    A+  L+    N+  I      PL VQ+L+S     +  A   L  L+
Sbjct: 429 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 488

Query: 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222
             KE +  I    A  PL  LL    +    A  A A+L  +S
Sbjct: 489 QDKEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRMS 529

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  145 bits (367), Expect = 1e-38
 Identities = 64/317 (20%), Positives = 116/317 (36%), Gaps = 14/317 (4%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGV 69
           +  +       R   ++  +   + N  D+ET    A  +  +              +G 
Sbjct: 42  SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHRE--GLLAIFKSGG 99

Query: 70  VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREL 129
           +  LV ML SP    +  ++  L NL +  E  K+ +  AG +  +V LL   N     +
Sbjct: 100 IPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAI 159

Query: 130 AAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQG-RVDAVTALHYLSTCKENSSP 187
               +  L+     +K  I ASG    LV I+ + + +         L  LS C  N   
Sbjct: 160 TTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPA 219

Query: 188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED 247
           I++A  +  L   L D     +  +     L  LS +   +  +   +G + TLV+ +  
Sbjct: 220 IVEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGS 274

Query: 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERA-RTLLD 304
             +     A G L +L      K + ++ + G I  L+R  +      +  E A   L  
Sbjct: 275 DDINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRH 333

Query: 305 LLRDTPQEKRLSSSVLE 321
           L     + +   ++V  
Sbjct: 334 LTSRHQEAEMAQNAVRL 350

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  126 bits (318), Expect = 3e-32
 Identities = 49/263 (18%), Positives = 96/263 (36%), Gaps = 7/263 (2%)

Query: 65  AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QN 123
            A   +  L  +L   +   +  + + +  L+ +       + +   +  +V  ++   +
Sbjct: 11  LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTND 70

Query: 124 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE 183
                  A  +  LS       AI  SG  P LV++L S        A+T LH L   +E
Sbjct: 71  VETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQE 130

Query: 184 NSSP-ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS-SSEEGRIAITNSDGGILTL 241
            +   +  A  +  ++ LL       KF    T  L+IL+  ++E ++ I  S GG   L
Sbjct: 131 GAKMAVRLAGGLQKMVALLNK--TNVKFLAITTDCLQILAYGNQESKLIILAS-GGPQAL 187

Query: 242 VETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERART 301
           V  +   +          +L +   C    +  I++ G +  L     + +    +    
Sbjct: 188 VNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW 246

Query: 302 LLDLLRDTPQEKRLSSSVLEKIV 324
            L  L D   ++     +L  +V
Sbjct: 247 TLRNLSDAATKQEGMEGLLGTLV 269

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score =  109 bits (273), Expect = 3e-26
 Identities = 45/219 (20%), Positives = 84/219 (38%), Gaps = 7/219 (3%)

Query: 99  NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAA-PLLV 157
           N ++        AIP L +LL  ++  +   AA  +  LS    ++ AI  S      +V
Sbjct: 4   NYQDDA-ELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIV 62

Query: 158 QIL-HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATA 216
           + + ++  V+        LH LS  +E    I  +  +P L+ +L        F    T 
Sbjct: 63  RTMQNTNDVETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLF-YAITT 121

Query: 217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL 276
           L  +L   E  ++A+  + GG+  +V  +   ++         L  L    ++  + +IL
Sbjct: 122 LHNLLLHQEGAKMAVRLA-GGLQKMVALLNKTNVKFLAITTDCLQILAYGNQE-SKLIIL 179

Query: 277 KEGAIPGLLRLTVEGTFEA-QERARTLLDLLRDTPQEKR 314
             G    L+ +    T+E        +L +L      K 
Sbjct: 180 ASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKP 218

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 98.1 bits (244), Expect = 2e-22
 Identities = 52/274 (18%), Positives = 88/274 (32%), Gaps = 31/274 (11%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSL--KTRSEFAAAGVVQPLVLMLVSPN 81
           +AL+  +         +    A   +R +  +       ++       +  +V +L  P+
Sbjct: 308 EALVRTVLRA--GDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPS 365

Query: 82  LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK--------------------- 120
              +  + + L+        N   +   GAIP LV+LL                      
Sbjct: 366 HWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVE 425

Query: 121 -FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179
             +   + E    A+  L+    N+  I      PL VQ+L+S     +  A   L  L+
Sbjct: 426 GVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA 485

Query: 180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL 239
             KE +  I    A  PL  LL    +    A  A A+L  +S  +        S     
Sbjct: 486 QDKEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRMSEDKPQDYKKRLSVELTS 543

Query: 240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273
           +L        +   + A   L    Q     YRQ
Sbjct: 544 SL---FRTEPMAWNETADLGLDIGAQGEPLGYRQ 574

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens} Length = 644

 Score = 83.8 bits (207), Expect = 1e-17
 Identities = 34/203 (16%), Positives = 64/203 (31%), Gaps = 24/203 (11%)

Query: 22  RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN 81
           R    +  +   L        I+A   + + +        +     G +  LV +LV  +
Sbjct: 349 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH 407

Query: 82  LDAIESSLLALLNLA---------------------VRNERNKVKIATAGAIPPLVELLK 120
            D    + +                            R+  N++ I     IP  V+LL 
Sbjct: 408 QDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLY 467

Query: 121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180
                ++ +AA  +  L+       AI A GA   L ++LHS +      A   L  +  
Sbjct: 468 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM-- 525

Query: 181 CKENSSPILDATAVPPLINLLKD 203
            ++         +V    +L + 
Sbjct: 526 SEDKPQDYKKRLSVELTSSLFRT 548

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score =  139 bits (353), Expect = 2e-38
 Identities = 58/332 (17%), Positives = 124/332 (37%), Gaps = 28/332 (8%)

Query: 14  QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPL 73
           +    W +  +  +++  + +          A   + K+        R      G +Q +
Sbjct: 21  ETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE--HRHAMNELGGLQAI 78

Query: 74  VLMLVSP-----------NLDAIESSLLALLNLAVRNERNKVKI-ATAGAIPPLVELLKF 121
             +L              ++     + +AL NL   +  NK  + +  G +  LV  LK 
Sbjct: 79  AELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKS 138

Query: 122 QNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHSGSVQG-RVDAVTALHYL 178
           ++  L+++ A+ +  LS  A   +K  +   G+   L++       +      ++AL  L
Sbjct: 139 ESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNL 198

Query: 179 ST-CKENSSPILDAT-AVPPLINLLKDCKK--YSKFAEKATALLEILSS----SEEGRIA 230
           S  C EN + I     A+  L+  L    +       E    +L  +SS    +E+ R  
Sbjct: 199 SAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQI 258

Query: 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE 290
           +  +   + TL++ ++  SL    +A G L +L        ++ +   GA+  L  L   
Sbjct: 259 LREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSMLKNLIHS 316

Query: 291 GTFEAQERA-RTLLDLLRDTPQEKRLSSSVLE 321
                   +   L +L+ + P + + ++ +  
Sbjct: 317 KHKMIAMGSAAALRNLMANRPAKYKDANIMSP 348

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A Length = 354

 Score = 88.0 bits (218), Expect = 1e-19
 Identities = 34/220 (15%), Positives = 69/220 (31%), Gaps = 21/220 (9%)

Query: 86  ESSLLALLN--LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN 143
              +L LL    A      + + A    +      +          A   ++ LS    +
Sbjct: 6   HHHMLHLLEQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEH 65

Query: 144 KPAIAASGAAPLLVQILHSGSVQGRVD-----------AVTALHYLSTCKENSSPILDAT 192
           + A+   G    + ++L        +            A  AL  L+     +   L + 
Sbjct: 66  RHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSM 125

Query: 193 --AVPPLINLLKDCKKYSKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDG 248
              +  L+  LK   +     +   ++L  LS       +  +    G +  L+E   + 
Sbjct: 126 KGCMRALVAQLKS--ESEDLQQVIASVLRNLSWRADVNSKKTLREV-GSVKALMECALEV 182

Query: 249 SLVSTQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 287
              ST    + AL +L   C +    +   +GA+  L+  
Sbjct: 183 KKESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGT 222

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  144 bits (363), Expect = 5e-38
 Identities = 57/293 (19%), Positives = 105/293 (35%), Gaps = 11/293 (3%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV 70
           +  +       R   ++  +   + N +              +     +       +G +
Sbjct: 178 SKKEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR-EGLLAIFKSGGI 236

Query: 71  QPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELA 130
             LV ML SP    +  ++  L NL +  E  K+ +  AG +  +V LL   N     + 
Sbjct: 237 PALVNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAIT 296

Query: 131 AAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQG-RVDAVTALHYLSTCKENSSPI 188
              +  L+     +K  I ASG    LV I+ + + +         L  LS C  N   I
Sbjct: 297 TDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAI 356

Query: 189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDG 248
           ++A  +  L   L D     +  +     L  LS +   +  +   +G + TLV+ +   
Sbjct: 357 VEAGGMQALGLHLTDPS--QRLVQNCLWTLRNLSDAATKQEGM---EGLLGTLVQLLGSD 411

Query: 249 SLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT--FEAQERA 299
            +     A G L +L      K + ++ + G I  L+R  +      +  E A
Sbjct: 412 DINVVTCAAGILSNLT-CNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEPA 463

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  132 bits (334), Expect = 3e-34
 Identities = 50/277 (18%), Positives = 100/277 (36%), Gaps = 8/277 (2%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           ++++   L   +++        ++ +   +  +++    A+G  Q LV ++ +   + + 
Sbjct: 278 LQKMVALLNKTNVKFLAITTDCLQILAYGNQ-ESKLIILASGGPQALVNIMRTYTYEKLL 336

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146
            +   +L +      NK  I  AG +  L   L   +  L +     +  LS AA  +  
Sbjct: 337 WTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEG 396

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCK 205
           +   G    LVQ+L S  +     A   L  L+    +N   +     +  L+  +    
Sbjct: 397 ME--GLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAG 454

Query: 206 KYSKFAEKATALLEILSS---SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262
                 E A   L  L+S     E          G+  +V+ +   S      A   L+ 
Sbjct: 455 DREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIR 514

Query: 263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
              +        + ++GAIP L++L V    + Q R 
Sbjct: 515 NL-ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRT 550

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  132 bits (332), Expect = 7e-34
 Identities = 50/289 (17%), Positives = 101/289 (34%), Gaps = 5/289 (1%)

Query: 38  DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97
           +++   E ++ ++  V            A   +  L  +L   +   +  + + +  L+ 
Sbjct: 120 NVQRLAEPSQMLKHAVVNLINYQDDAELATRAIPELTKLLNDEDQVVVNKAAVMVHQLSK 179

Query: 98  RNERNKVKIATAGAIPPLVELLKFQNGT-LRELAAAAILTLSAAAPNKPAIAASGAAPLL 156
           +       + +   +  +V  ++  N        +  +  LS       AI  SG  P L
Sbjct: 180 KEASRHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHREGLLAIFKSGGIPAL 239

Query: 157 VQILHSGSVQGRVDAVTALHYLSTCKENSSP-ILDATAVPPLINLLKDCKKYSKFAEKAT 215
           V +L S        A+T LH L   +E +   +  A  +  ++ LL   K   KF    T
Sbjct: 240 VNMLGSPVDSVLFHAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLN--KTNVKFLAITT 297

Query: 216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275
             L+IL+   +    I  + GG   LV  +   +          +L +   C    +  I
Sbjct: 298 DCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVC-SSNKPAI 356

Query: 276 LKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIV 324
           ++ G +  L     + +    +     L  L D   ++     +L  +V
Sbjct: 357 VEAGGMQALGLHLTDPSQRLVQNCLWTLRNLSDAATKQEGMEGLLGTLV 405

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score =  108 bits (271), Expect = 7e-26
 Identities = 56/291 (19%), Positives = 97/291 (33%), Gaps = 33/291 (11%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV--SPN 81
           + L+  L   L + D+     AA  +  +   +  K +      G ++ LV  ++     
Sbjct: 398 EGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNY-KNKMMVCQVGGIEALVRTVLRAGDR 456

Query: 82  LDAIESSLLALLNLAVR---NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138
            D  E ++ AL +L  R    E  +  +     +P +V+LL   +      A   ++   
Sbjct: 457 EDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNL 516

Query: 139 AAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDA----------------------VTAL 175
           A  P N   +   GA P LVQ+L       +                           AL
Sbjct: 517 ALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGAL 576

Query: 176 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSD 235
           H L+    N   I     +P  + LL            A  +L  L+  +E   AI   +
Sbjct: 577 HILARDIHNRIVIRGLNTIPLFVQLLYSPI--ENIQRVAAGVLCELAQDKEAAEAIEA-E 633

Query: 236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 286
           G    L E +   +     +A   L  + +     Y++ +  E     L R
Sbjct: 634 GATAPLTELLHSRNEGVATYAAAVLFRMSEDKPQDYKKRLSVE-LTSSLFR 683

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio} Length = 780

 Score = 85.5 bits (211), Expect = 3e-18
 Identities = 36/203 (17%), Positives = 63/203 (31%), Gaps = 25/203 (12%)

Query: 22  RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN 81
           R    +  +   L        I+A   + + +        +     G +  LV +LV  +
Sbjct: 485 RLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP-ANHAPLREQGAIPRLVQLLVRAH 543

Query: 82  LDAIESSLLALLNLAV---------------------RNERNKVKIATAGAIPPLVELLK 120
            D    + +                            R+  N++ I     IP  V+LL 
Sbjct: 544 QDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY 603

Query: 121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST 180
                ++ +AA  +  L+       AI A GA   L ++LHS +      A   L  +S 
Sbjct: 604 SPIENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS- 662

Query: 181 CKENSSPILDATAVPPLINLLKD 203
             E+            L + L  
Sbjct: 663 --EDKPQDYKKRLSVELTSSLFR 683

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  134 bits (338), Expect = 1e-35
 Identities = 59/332 (17%), Positives = 123/332 (37%), Gaps = 28/332 (8%)

Query: 7   KNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA 66
           +   A  +    W +  +  +++  + +          A   + K+        R     
Sbjct: 130 EQIRAYCETCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSFDEE--HRHAMNE 187

Query: 67  AGVVQPLVLMLVS-----------PNLDAIESSLLALLNLAVRNERNKVKI-ATAGAIPP 114
            G +Q +  +L              ++     + +AL NL   +  NK  + +  G +  
Sbjct: 188 LGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRA 247

Query: 115 LVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQG-RVDA 171
           LV  LK ++  L+++ A+ +  LS  A   +K  +   G+   L++       +      
Sbjct: 248 LVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSV 307

Query: 172 VTALHYLST-CKENSSPILDAT-AVPPLINLL--KDCKKYSKFAEKATALLEILSS---- 223
           ++AL  LS  C EN + I     A+  L+  L  +         E    +L  +SS    
Sbjct: 308 LSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIAT 367

Query: 224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG 283
           +E+ R  +  +   + TL++ ++  SL    +A G L +L        ++ +   GA+  
Sbjct: 368 NEDHRQILREN-NCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPK-DQEALWDMGAVSM 425

Query: 284 LLRLTVEGTFEAQERA-RTLLDLLRDTPQEKR 314
           L  L           +   L +L+ + P + +
Sbjct: 426 LKNLIHSKHKMIAMGSAAALRNLMANRPAKYK 457

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  118 bits (297), Expect = 8e-30
 Identities = 59/336 (17%), Positives = 122/336 (36%), Gaps = 23/336 (6%)

Query: 2   GHEENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR 61
             +++     +   +EA  +   AL   +  +  +     +I     + ++         
Sbjct: 82  NDKDSVLLGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWE 141

Query: 62  SEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF 121
            + A    +      + +P    I  ++  L+ L+  +E ++  +   G +  + ELL+ 
Sbjct: 142 WQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQV 200

Query: 122 -----------QNGTLRELAAAAILTLSAA-APNKPAIAAS-GAAPLLVQILHSGSVQGR 168
                       + TLR  A  A+  L+     NK  + +  G    LV  L S S   +
Sbjct: 201 DCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQ 260

Query: 169 VDAVTALHYLS--TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 226
               + L  LS      +   + +  +V  L+    + KK S      +AL  + +   E
Sbjct: 261 QVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTE 320

Query: 227 GRIAITNSDGGILTLVETVEDGSLVST----QHAVGALLSLCQSC--RDKYRQLILKEGA 280
            +  I   DG +  LV T+   S  +T    +   G L ++       + +RQ++ +   
Sbjct: 321 NKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILRENNC 380

Query: 281 IPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRL 315
           +  LL+     +      A  TL +L    P+++  
Sbjct: 381 LQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEA 416

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score =  105 bits (263), Expect = 3e-25
 Identities = 45/262 (17%), Positives = 92/262 (35%), Gaps = 14/262 (5%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
           Q   E       +  +  +  A   +  +         +  +  G ++ LV  L S + D
Sbjct: 199 QVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESED 258

Query: 84  AIESSLLALLNLAVR-NERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA 141
             +     L NL+ R +  +K  +   G++  L+E     +  +  +   +A+  LSA  
Sbjct: 259 LQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHC 318

Query: 142 P-NKPAIA-ASGAAPLLVQILHSGSVQGRVD----AVTALHYLS----TCKENSSPILDA 191
             NK  I    GA   LV  L   S    +         L  +S    T +++   + + 
Sbjct: 319 TENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILREN 378

Query: 192 TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLV 251
             +  L+  LK        +     L  + + + + + A+ +  G +  L   +     +
Sbjct: 379 NCLQTLLQHLKSHSLTIV-SNACGTLWNLSARNPKDQEALWDM-GAVSMLKNLIHSKHKM 436

Query: 252 STQHAVGALLSLCQSCRDKYRQ 273
               +  AL +L  +   KY+ 
Sbjct: 437 IAMGSAAALRNLMANRPAKYKD 458

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens} Length = 458

 Score = 85.0 bits (210), Expect = 3e-18
 Identities = 46/295 (15%), Positives = 98/295 (33%), Gaps = 53/295 (17%)

Query: 69  VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ------ 122
           +V  L+ ML + + D +  +LLA+      ++ + + +  +G +P L++LL         
Sbjct: 33  MVYSLLSMLGTHDKDDMSRTLLAM----SSSQDSCISMRQSGCLPLLIQLLHGNDKDSVL 88

Query: 123 ------NGTLRELAAAAILTLSAAAPNKP-AIAASGAAPLLVQI---------------- 159
                 +   R  A+AA+  +  + P+            LL QI                
Sbjct: 89  LGNSRGSKEARARASAALHNIIHSQPDDKRGRREIRVLHLLEQIRAYCETCWEWQEAHEP 148

Query: 160 --------LHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFA 211
                   + +        AV  L  LS  +E+   + +   +  +  LL+   +     
Sbjct: 149 GMDQDKNPMPAPVEHQICPAVCVLMKLSFDEEHRHAMNELGGLQAIAELLQVDCEMYGLT 208

Query: 212 EK----------ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261
                         AL  +       +  + +  G +  LV  ++  S    Q     L 
Sbjct: 209 NDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLR 268

Query: 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEA--QERARTLLDLLRDTPQEKR 314
           +L        ++ + + G++  L+   +E   E+  +     L +L     + K 
Sbjct: 269 NLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKA 323

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  127 bits (322), Expect = 3e-35
 Identities = 52/199 (26%), Positives = 93/199 (46%), Gaps = 5/199 (2%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           + ++  +L + D +    A R + ++    + +       AG +  LV +L SPN   ++
Sbjct: 14  LPQMVQQLNSPDQQELQSALRKLSQIASGGN-EQIQAVIDAGALPALVQLLSSPNEQILQ 72

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKP 145
            +L AL N+A         +  AGA+P LV+LL   N  + + A  A+  +++       
Sbjct: 73  EALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQ 132

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDC 204
           A+  +GA P LVQ+L S + Q   +A+ AL  +++   E    + +A A+  L  L    
Sbjct: 133 AVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQKQAVKEAGALEKLEQLQSH- 191

Query: 205 KKYSKFAEKATALLEILSS 223
            +  K  ++A   LE L S
Sbjct: 192 -ENEKIQKEAQEALEKLQS 209

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  109 bits (275), Expect = 1e-28
 Identities = 52/211 (24%), Positives = 91/211 (43%), Gaps = 12/211 (5%)

Query: 60  TRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL 119
           +         +  +V  L SP+   ++S+L  L  +A         +  AGA+P LV+LL
Sbjct: 4   SHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLL 63

Query: 120 KFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178
              N  + + A  A+  +++       A+  +GA P LVQ+L S + Q   +A+ AL  +
Sbjct: 64  SSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI 123

Query: 179 STC-KENSSPILDATAVPPLINLLK----DCKKYSKFAEKATALLEILSSSEEGRIAITN 233
           ++   E    ++DA A+P L+ LL        + +       AL  I S   E + A+  
Sbjct: 124 ASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEA-----LWALSNIASGGNEQKQAVKE 178

Query: 234 SDGGILTLVETVEDGSLVSTQHAVGALLSLC 264
           + G +  L +     +    + A  AL  L 
Sbjct: 179 A-GALEKLEQLQSHENEKIQKEAQEALEKLQ 208

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A Length = 210

 Score =  107 bits (270), Expect = 7e-28
 Identities = 48/209 (22%), Positives = 93/209 (44%), Gaps = 5/209 (2%)

Query: 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQ 158
             +         +P +V+ L   +    + A   +  +++       A+  +GA P LVQ
Sbjct: 2   RGSHHHHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQ 61

Query: 159 ILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATAL 217
           +L S + Q   +A+ AL  +++   E    ++DA A+P L+ LL    +     E   AL
Sbjct: 62  LLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQIL-QEALWAL 120

Query: 218 LEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK 277
             I S   E   A+ ++ G +  LV+ +   +    Q A+ AL ++     ++ +Q + +
Sbjct: 121 SNIASGGNEQIQAVIDA-GALPALVQLLSSPNEQILQEALWALSNIASGGNEQ-KQAVKE 178

Query: 278 EGAIPGLLRLTVEGTFEAQERARTLLDLL 306
            GA+  L +L      + Q+ A+  L+ L
Sbjct: 179 AGALEKLEQLQSHENEKIQKEAQEALEKL 207

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  126 bits (318), Expect = 8e-33
 Identities = 57/278 (20%), Positives = 104/278 (37%), Gaps = 10/278 (3%)

Query: 25  ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDA 84
             +E L       +   + E+A  +  +   +SL+TR     AG V   + +L S   D 
Sbjct: 68  RFVEFLK---RKENCTLQFESAWVLTNIASGNSLQTR-IVIQAGAVPIFIELLSSEFEDV 123

Query: 85  IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPN 143
            E ++ AL N+A  +   +  +     +PPL++L   QN  T+   A  A+  L      
Sbjct: 124 QEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSP 183

Query: 144 KPAIAA-SGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLL 201
            P  A  S    +L  +L         DA  AL YLS    +    ++DA     L+ LL
Sbjct: 184 PPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRLVELL 243

Query: 202 KDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL 261
                    +    A+  I++  +     I N    + +L+  +        + A   + 
Sbjct: 244 MHNDYKVV-SPALRAVGNIVTGDDIQTQVILNC-SALQSLLHLLSSPKESIKKEACWTIS 301

Query: 262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
           ++  +      Q ++     P L+ +     F  ++ A
Sbjct: 302 NIT-AGNRAQIQTVIDANIFPALISILQTAEFRTRKEA 338

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  112 bits (281), Expect = 1e-27
 Identities = 47/266 (17%), Positives = 94/266 (35%), Gaps = 8/266 (3%)

Query: 56  SSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV--RNERNKVKIATAGAIP 113
           + +          +   ++ M+ S + +   S+      L     N      I+T G + 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 114 PLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQILHSGSVQGRVDA 171
             VE LK +     +  +A +LT  A+  +     +  +GA P+ +++L S     +  A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 172 VTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIA 230
           V AL  ++         +LD   +PPL+ L     + +     A   L  L   +     
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLT-MTRNAVWALSNLCRGKSPPPE 186

Query: 231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE 290
                  +  L   +          A  AL  L     DK  Q ++  G    L+ L + 
Sbjct: 187 FAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMH 245

Query: 291 GTFEAQERA-RTLLDLLRDTPQEKRL 315
             ++    A R + +++     + ++
Sbjct: 246 NDYKVVSPALRAVGNIVTGDDIQTQV 271

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score =  108 bits (272), Expect = 2e-26
 Identities = 58/292 (19%), Positives = 106/292 (36%), Gaps = 8/292 (2%)

Query: 13  DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF-AAAGVVQ 71
            Q           +  ++ + + +   E ++ A +  RK++ K       E  +  GVV 
Sbjct: 8   AQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVA 67

Query: 72  PLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELA 130
             V  +    N      S   L N+A  N      +  AGA+P  +ELL  +   ++E A
Sbjct: 68  RFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSEFEDVQEQA 127

Query: 131 AAAILTLSAAAPN-KPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTCKENSSPI 188
             A+  ++  +   +  +      P L+Q+      +    +AV AL  L   K      
Sbjct: 128 VWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEF 187

Query: 189 -LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED 247
              +  +  L  LL         A+   AL  +     +   A+ ++ G    LVE +  
Sbjct: 188 AKVSPCLNVLSWLLFVSDTDVL-ADACWALSYLSDGPNDKIQAVIDA-GVCRRLVELLMH 245

Query: 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
                   A+ A+ ++  +  D   Q+IL   A+  LL L        ++ A
Sbjct: 246 NDYKVVSPALRAVGNIV-TGDDIQTQVILNCSALQSLLHLLSSPKESIKKEA 296

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 95.0 bits (236), Expect = 1e-21
 Identities = 44/225 (19%), Positives = 85/225 (37%), Gaps = 7/225 (3%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAI 85
            +  LS  L   D +   +A   +  +    + K       AGV + LV +L+  +   +
Sbjct: 193 CLNVLSWLLFVSDTDVLADACWALSYLSDGPNDK-IQAVIDAGVCRRLVELLMHNDYKVV 251

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NK 144
             +L A+ N+   ++     I    A+  L+ LL     ++++ A   I  ++A      
Sbjct: 252 SPALRAVGNIVTGDDIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQI 311

Query: 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLK 202
             +  +   P L+ IL +   + R +A  A+   ++    E    +++   + PL +LL 
Sbjct: 312 QTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT 371

Query: 203 DCKKYSKFAEKA-TALLEILSSSEEGRIAITNSDGGILTLVETVE 246
                SK  + A   L  IL   E+              L+E   
Sbjct: 372 V--MDSKIVQVALNGLENILRLGEQEAKRNGTGINPYCALIEEAY 414

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 79.2 bits (195), Expect = 2e-16
 Identities = 39/241 (16%), Positives = 79/241 (32%), Gaps = 12/241 (4%)

Query: 93  LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP---AIAA 149
           +        N            ++E++  ++   +  A      L +  PN P    I+ 
Sbjct: 3   MGFHEAQINNMEMAPGGVITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVIST 62

Query: 150 SGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKY 207
            G     V+ L    +   + ++   L  +++     +  ++ A AVP  I LL     +
Sbjct: 63  PGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE--F 120

Query: 208 SKFAEKA-TALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266
               E+A  AL  I   S   R  + +    +  L++     + ++        LS    
Sbjct: 121 EDVQEQAVWALGNIAGDSTMCRDYVLDC-NILPPLLQLFSKQNRLTMTRNAVWALSNLCR 179

Query: 267 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR---LSSSVLEKI 323
            +    +       +  L  L      +    A   L  L D P +K    + + V  ++
Sbjct: 180 GKSPPPEFAKVSPCLNVLSWLLFVSDTDVLADACWALSYLSDGPNDKIQAVIDAGVCRRL 239

Query: 324 V 324
           V
Sbjct: 240 V 240

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 55.3 bits (133), Expect = 1e-08
 Identities = 22/153 (14%), Positives = 49/153 (32%), Gaps = 7/153 (4%)

Query: 20  NQRKQALIEE-----LSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV 74
           + + Q ++       L   L +     K EA   I  +   +          A +   L+
Sbjct: 266 DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNR-AQIQTVIDANIFPALI 324

Query: 75  LMLVSPNLDAIESSLLALLNLAVR-NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAA 133
            +L +      + +  A+ N     +      +   G I PL +LL   +  + ++A   
Sbjct: 325 SILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLTVMDSKIVQVALNG 384

Query: 134 ILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ 166
           +  +      +     +G  P    I  +  + 
Sbjct: 385 LENILRLGEQEAKRNGTGINPYCALIEEAYGLD 417

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A Length = 450

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 26/156 (16%), Positives = 58/156 (37%), Gaps = 7/156 (4%)

Query: 174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR--IAI 231
           A+ +      N            +I ++    K  +    AT     L S E       +
Sbjct: 2   AMGFHEAQINNMEMAPGGVITSDMIEMIFS--KSPEQQLSATQKFRKLLSKEPNPPIDEV 59

Query: 232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG 291
            ++ G +   VE ++     + Q     +L+   S      +++++ GA+P  + L    
Sbjct: 60  ISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQTRIVIQAGAVPIFIELLSSE 119

Query: 292 TFEAQERA-RTLLDLLRDTPQEKR--LSSSVLEKIV 324
             + QE+A   L ++  D+   +   L  ++L  ++
Sbjct: 120 FEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLL 155

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  122 bits (307), Expect = 5e-31
 Identities = 51/314 (16%), Positives = 122/314 (38%), Gaps = 7/314 (2%)

Query: 4   EENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE 63
           + ++   ++   ++ +  + Q  + +++ +L + D++ ++ A    R+++ +        
Sbjct: 66  DSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDV 125

Query: 64  FAAAGVVQPLVLMLVSPNLDAI-ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQ 122
              AGVV  LV  +     + +   +  AL N+A         +  A A+P  ++LL   
Sbjct: 126 VIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLLYTG 185

Query: 123 NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC 181
           +  ++E A  A+  ++  +   +  +    A   ++ + +S        A   L  L   
Sbjct: 186 SVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRG 245

Query: 182 KENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT 240
           K+      + + A+P L  L+      ++    A   +  LS   +  I           
Sbjct: 246 KKPQPDWSVVSQALPTLAKLIYS--MDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKR 303

Query: 241 LVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA- 299
           LVE +   S +    A+ A+ ++     D   Q+++  G +P L  L        ++ A 
Sbjct: 304 LVELLSHESTLVQTPALRAVGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEAC 362

Query: 300 RTLLDLLRDTPQEK 313
            T+ ++     ++ 
Sbjct: 363 WTISNITAGNTEQI 376

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score =  116 bits (291), Expect = 9e-29
 Identities = 48/268 (17%), Positives = 105/268 (39%), Gaps = 6/268 (2%)

Query: 38  DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97
               ++EAA  +  +   +S +T+     A  V   + +L + +++  E ++ AL N+A 
Sbjct: 144 PEMLQLEAAWALTNIASGTSAQTKV-VVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG 202

Query: 98  RNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSA-AAPNKPAIAASGAAPLL 156
            +   +  +    A+ P++ L      +L   A   +  L     P       S A P L
Sbjct: 203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTL 262

Query: 157 VQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKAT 215
            ++++S   +  VDA  A+ YLS   +E    ++D      L+ LL      +     A 
Sbjct: 263 AKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHES--TLVQTPAL 320

Query: 216 ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLI 275
             +  + +  + +  +  + G +  L   +        + A    +S   +   +  Q +
Sbjct: 321 RAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWT-ISNITAGNTEQIQAV 379

Query: 276 LKEGAIPGLLRLTVEGTFEAQERARTLL 303
           +    IP L++L     ++ ++ A   +
Sbjct: 380 IDANLIPPLVKLLEVAEYKTKKEACWAI 407

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 44/291 (15%), Positives = 99/291 (34%), Gaps = 14/291 (4%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           +E +     +        A   +  + +            +  +  L  ++ S + + + 
Sbjct: 217 MEPILGLFNSNKPSLIRTATWTLSNLCR-GKKPQPDWSVVSQALPTLAKLIYSMDTETLV 275

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKP 145
            +  A+  L+   +     +        LVELL  ++  ++  A  A+  +         
Sbjct: 276 DACWAISYLSDGPQEAIQAVIDVRIPKRLVELLSHESTLVQTPALRAVGNIVTGNDLQTQ 335

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDC 204
            +  +G  P L  +L S     + +A   +  ++    E    ++DA  +PPL+ LL+  
Sbjct: 336 VVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLEVA 395

Query: 205 K-KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL 263
           + K  K A  A +            I    S G I  L + +E       +  + AL ++
Sbjct: 396 EYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENI 455

Query: 264 CQS----------CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 304
            +             ++    I K G +  +         +  E+A  +++
Sbjct: 456 LKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYKIIE 506

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 78.9 bits (194), Expect = 3e-16
 Identities = 41/247 (16%), Positives = 88/247 (35%), Gaps = 12/247 (4%)

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP 145
           + +     + +  +   +        +P + + L   +   +  A      + +     P
Sbjct: 63  DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP 122

Query: 146 --AIAASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLL 201
              +  +G  P LV+ +        +++A  AL  +++     +  ++DA AVP  I LL
Sbjct: 123 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 182

Query: 202 KDCKKYSKFAEKAT-ALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL 260
                  +  E+A  AL  +   S + R  +      +  ++           + A   L
Sbjct: 183 Y--TGSVEVKEQAIWALGNVAGDSTDYRDYVLQC-NAMEPILGLFNSNKPSLIRTATWTL 239

Query: 261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR---LSS 317
            +LC+  +       +   A+P L +L      E    A   +  L D PQE     +  
Sbjct: 240 SNLCRG-KKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQEAIQAVIDV 298

Query: 318 SVLEKIV 324
            + +++V
Sbjct: 299 RIPKRLV 305

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 24/159 (15%), Positives = 52/159 (32%), Gaps = 4/159 (2%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV 70
            T  + +        ++  L   L +     K EA   I  +   ++ +       A ++
Sbjct: 327 VTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNT-EQIQAVIDANLI 385

Query: 71  QPLVLMLVSPNLDAIESSLLALLNLAVR---NERNKVKIATAGAIPPLVELLKFQNGTLR 127
            PLV +L        + +  A+ N +            + + G I PL +LL+  +  + 
Sbjct: 386 PPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRII 445

Query: 128 ELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQ 166
           E+   A+  +                     I  +G ++
Sbjct: 446 EVTLDALENILKMGEADKEARGLNINENADFIEKAGGME 484

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A Length = 530

 Score = 43.5 bits (102), Expect = 9e-05
 Identities = 28/122 (22%), Positives = 44/122 (36%), Gaps = 13/122 (10%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTR--SEFAAAGVVQPLVLMLVSPNLD 83
           LI  L   L   + +TK EA   I         +        + G ++PL  +L   +  
Sbjct: 384 LIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNR 443

Query: 84  AIESSLLALLNLAVRNERNK-----------VKIATAGAIPPLVELLKFQNGTLRELAAA 132
            IE +L AL N+    E +K             I  AG +  +    + +N  + E A  
Sbjct: 444 IIEVTLDALENILKMGEADKEARGLNINENADFIEKAGGMEKIFNCQQNENDKIYEKAYK 503

Query: 133 AI 134
            I
Sbjct: 504 II 505

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  121 bits (305), Expect = 9e-31
 Identities = 54/282 (19%), Positives = 111/282 (39%), Gaps = 14/282 (4%)

Query: 25  ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDA 84
             +  L           + E+A  +  +   +S +T++     G +   + +L SP+   
Sbjct: 104 KFVSFLGK---TDCSPIQFESAWALTNIASGTSEQTKA-VVDGGAIPAFISLLASPHAHI 159

Query: 85  IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA---- 140
            E ++ AL N+A      +  +   GAI PL+ LL   + +         LT + +    
Sbjct: 160 SEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCR 219

Query: 141 --APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPL 197
              P  P  A     P LV++LH    +   D+  A+ YL+    E    ++    VP L
Sbjct: 220 NKNPAPPLDAVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQL 279

Query: 198 INLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV 257
           + LL   +          A+  I++ ++E    + ++ G +      + +      + A 
Sbjct: 280 VKLLGATELPIV-TPALRAIGNIVTGTDEQTQKVIDA-GALAVFPSLLTNPKTNIQKEAT 337

Query: 258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
             + ++  + R    Q ++  G +P L+ +  +  F+ Q+ A
Sbjct: 338 WTMSNIT-AGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEA 378

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score =  105 bits (262), Expect = 5e-25
 Identities = 52/297 (17%), Positives = 103/297 (34%), Gaps = 11/297 (3%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV 70
               +  +        +E++   + + +LE++++A +  RK++ +           AG++
Sbjct: 43  KAMADIGSNQGTVNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLI 102

Query: 71  QPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREL 129
              V  L  +        S  AL N+A         +   GAIP  + LL   +  + E 
Sbjct: 103 PKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQ 162

Query: 130 AAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAV--TALHYLSTCKENSS 186
           A  A+  ++      +  +   GA   L+ +L    +              LS    N +
Sbjct: 163 AVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKN 222

Query: 187 P----ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLV 242
           P          +P L+ LL         A+   A+  +     E    +    G +  LV
Sbjct: 223 PAPPLDAVEQILPTLVRLLHHNDPEVL-ADSCWAISYLTDGPNERIEMVVKK-GVVPQLV 280

Query: 243 ETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
           + +    L     A+ A+ ++     D+  Q ++  GA+     L        Q+ A
Sbjct: 281 KLLGATELPIVTPALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEA 336

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 91.6 bits (227), Expect = 2e-20
 Identities = 40/247 (16%), Positives = 89/247 (36%), Gaps = 8/247 (3%)

Query: 65  AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNG 124
           A   ++  LV +L   + + +  S  A+  L          +   G +P LV+LL     
Sbjct: 229 AVEQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATEL 288

Query: 125 TLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-K 182
            +   A  AI  +          +  +GA  +   +L +     + +A   +  ++   +
Sbjct: 289 PIVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ 348

Query: 183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLV 242
           +    +++   VP L+ +L      ++  E A A+    S     +I      G I  L+
Sbjct: 349 DQIQQVVNHGLVPFLVGVLSKADFKTQ-KEAAWAITNYTSGGTVEQIVYLVHCGIIEPLM 407

Query: 243 ETVEDGSLVSTQHAVGALLSLCQSCR-----DKYRQLILKEGAIPGLLRLTVEGTFEAQE 297
             +        Q  + A+ ++ Q+       +K   +I + G +  +  L         +
Sbjct: 408 NLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYK 467

Query: 298 RARTLLD 304
            +  L++
Sbjct: 468 ASLNLIE 474

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 86.6 bits (214), Expect = 1e-18
 Identities = 41/206 (19%), Positives = 82/206 (39%), Gaps = 7/206 (3%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
           + ++  L   L + D E   ++   I  +    + +        GVV  LV +L +  L 
Sbjct: 231 EQILPTLVRLLHHNDPEVLADSCWAISYLTDGPNER-IEMVVKKGVVPQLVKLLGATELP 289

Query: 84  AIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP- 142
            +  +L A+ N+    +    K+  AGA+     LL      +++ A   +  ++A    
Sbjct: 290 IVTPALRAIGNIVTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQD 349

Query: 143 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINL 200
               +   G  P LV +L     + + +A  A+   ++    E    ++    + PL+NL
Sbjct: 350 QIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNL 409

Query: 201 LKDCKKYSKFAEKA-TALLEILSSSE 225
           L    K +K  +    A+  I  ++E
Sbjct: 410 LSA--KDTKIIQVILDAISNIFQAAE 433

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 64.7 bits (157), Expect = 1e-11
 Identities = 32/203 (15%), Positives = 68/203 (33%), Gaps = 4/203 (1%)

Query: 99  NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ 158
           +  +   +     +         +               + A         + +   +V+
Sbjct: 5   HHHSSGLVPRGSGMKETAAAKFERQHMDSPDLGTDDDDKAMADIGSNQGTVNWSVEDIVK 64

Query: 159 ILHSGSVQGRVDAVTALHYLSTCKENSSP--ILDATAVPPLINLLKDCKKYSKFAEKATA 216
            ++S +++ ++ A  A   L + ++      I+ A  +P  ++ L          E A A
Sbjct: 65  GINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWA 124

Query: 217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL 276
           L  I S + E   A+ +    I   +  +       ++ AV AL ++       +R L++
Sbjct: 125 LTNIASGTSEQTKAVVDGG-AIPAFISLLASPHAHISEQAVWALGNIAGDG-SAFRDLVI 182

Query: 277 KEGAIPGLLRLTVEGTFEAQERA 299
           K GAI  LL L            
Sbjct: 183 KHGAIDPLLALLAVPDLSTLACG 205

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 23/115 (20%), Positives = 49/115 (42%), Gaps = 6/115 (5%)

Query: 26  LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAI 85
           L+  L   L   D +T+ EAA  I       +++        G+++PL+ +L + +   I
Sbjct: 359 LVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKII 418

Query: 86  ESSLLALLNLAV------RNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAI 134
           +  L A+ N+          E+  + I   G +  +  L + +N ++ + +   I
Sbjct: 419 QVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLI 473

>3oqs_A Importin subunit alpha-2; importin alpha, karyopherin alpha, nuclear localisation SIGN recognition, chloride intracellular channel 4, CLIC4 NLS; 2.00A {Mus musculus} PDB: 3rz9_A 3rzx_A 1q1s_C 1q1t_C 3tpo_A 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C 1ial_A 1y2a_C 3btr_C 3l3q_A* 3ve6_A 2c1m_A ... Length = 510

 Score = 50.8 bits (121), Expect = 3e-07
 Identities = 30/192 (15%), Positives = 60/192 (31%), Gaps = 10/192 (5%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV 70
            T  +E+         +      L N     + EA   +  +          +    G+V
Sbjct: 302 VTGTDEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQ-DQIQQVVNHGLV 360

Query: 71  QPLVLMLVSPNLDAIESSLLALLNLAVR-NERNKVKIATAGAIPPLVELLKFQNGTLREL 129
             LV +L   +    + +  A+ N          V +   G I PL+ LL  ++  + ++
Sbjct: 361 PFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQV 420

Query: 130 AAAAILTLSAAAPNKP-------AIAASGAAPLLVQILHSGSVQGRVDAVTAL-HYLSTC 181
              AI  +  AA            I   G    +  +    +      ++  +  Y S  
Sbjct: 421 ILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIEKYFSVE 480

Query: 182 KENSSPILDATA 193
           +E    ++  T 
Sbjct: 481 EEEDQNVVPETT 492

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score =  105 bits (262), Expect = 3e-25
 Identities = 47/235 (20%), Positives = 82/235 (34%), Gaps = 17/235 (7%)

Query: 70  VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREL 129
           +   V  L S +          + +   ++E  K ++   G I  LV+LL+  N  +++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 130 AAAAILTLSAAAP-NKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENSSP 187
           AA A+  L   +  NK            V +L  +G+ + +      L  LS+  E    
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 188 ILDATAVPPLINLL--------------KDCKKYSKFAEKATALLEILSSSEEGRIAITN 233
           ++ A A+P L + +                     +    AT  L  LSS++ GR  + N
Sbjct: 124 LI-ADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 234 SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT 288
             G I +L+  V++    S          +C      YR           L    
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNA 237

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 95.3 bits (236), Expect = 1e-21
 Identities = 37/209 (17%), Positives = 78/209 (37%), Gaps = 18/209 (8%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           I +    L + D + +   A  I+    +     + +    G +  LV +L SPN +  +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKP 145
           ++  AL NL  R+  NK++      I   V LL +  N  +++     +  LS+    K 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 146 AIAASGAAPLLVQIL---------------HSGSVQGRVDAVTALHYLSTCKENSSPILD 190
            + A     L  +++                    +   +A   L  LS+       + +
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRN 182

Query: 191 AT-AVPPLINLLKDCKKYSKFAEKATALL 218
            +  +  L+  +++C   S+  +K+    
Sbjct: 183 YSGLIDSLMAYVQNCVAASRCDDKSVENC 211

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 64.1 bits (155), Expect = 2e-11
 Identities = 30/189 (15%), Positives = 64/189 (33%), Gaps = 13/189 (6%)

Query: 55  KSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNER-----NKVKIAT 108
           +++ K       +  ++  + LM  S     +E+   AL NL           +++    
Sbjct: 270 ETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLK 329

Query: 109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG----- 163
              +P +  LL+  N  +    A+ +  +S        +       +   +         
Sbjct: 330 EKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSN 389

Query: 164 SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222
           S      A   +  L     + +     ++ +  +INL +      K AE A  LL  + 
Sbjct: 390 SEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNIINLCRS-SASPKAAEAARLLLSDMW 448

Query: 223 SSEEGRIAI 231
           SS+E +  +
Sbjct: 449 SSKELQGVL 457

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24 Length = 457

 Score = 55.6 bits (133), Expect = 1e-08
 Identities = 60/386 (15%), Positives = 117/386 (30%), Gaps = 54/386 (13%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGV 69
                      R+Q  I E    L   G+ E + +    +  +     LK       A  
Sbjct: 72  VFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE---LIADA 128

Query: 70  VQPLVLMLVSP----------------NLDAIESSLLALLNLAVRNERNKVKIATAGAIP 113
           +  L   ++ P                + +   ++   L NL+  +   +     +G I 
Sbjct: 129 LPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID 188

Query: 114 PLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT 173
            L+  ++      R    +    +         + A           ++ +      +  
Sbjct: 189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTG 248

Query: 174 ALHYLSTCKENSS----------------PILDATAVPPLINLLKDCKKYSKFAEKATAL 217
                S    N++                 +  + A+   +NL+   KK +     A AL
Sbjct: 249 CFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGAL 308

Query: 218 LEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273
             + +S    S      I   + G+  +   ++ G+    +     L ++    R     
Sbjct: 309 QNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNM---SRHPLLH 365

Query: 274 LILKEGAIPGLLRLTVEGTFEAQER-------ARTLLDLLRDTPQEKR--LSSSVLEKIV 324
            ++     P + RL    T               T+ +L+   PQ  +   SSS+L  I+
Sbjct: 366 RVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNII 425

Query: 325 YDIAARVDGADKAAETAKRLLQDMVQ 350
                R   + KAAE A+ LL DM  
Sbjct: 426 N--LCRSSASPKAAEAARLLLSDMWS 449

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score =  100 bits (249), Expect = 3e-23
 Identities = 50/263 (19%), Positives = 84/263 (31%), Gaps = 27/263 (10%)

Query: 61  RSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK 120
                    +  ++ ML         ++   L +L  RN++ K  +     IP LV LL 
Sbjct: 41  PPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGIPVLVGLLD 100

Query: 121 FQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHY 177
                +   A  A+  +S      NK AI      P LV++L  +  +         L  
Sbjct: 101 HPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWN 160

Query: 178 LSTCKENSSPILDATAVPPLINLL-----------------KDCKKYSKFAEKATALLEI 220
           LS+       I+D  A+  L + +                 +  +  S     A  L  +
Sbjct: 161 LSSHDSIKMEIVDH-ALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNV 219

Query: 221 LSSSEEGRIAITNSDGGILTLVETV------EDGSLVSTQHAVGALLSLCQSCRDKYRQL 274
            S   E R  +   DG +  L+  V      +D      ++ V  L +L      +  Q 
Sbjct: 220 SSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQA 279

Query: 275 ILKEGAIPGLLRLTVEGTFEAQE 297
              + A P +   T        E
Sbjct: 280 ERYQEAAPNVANNTGTSPARGYE 302

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 84.2 bits (207), Expect = 6e-18
 Identities = 39/208 (18%), Positives = 78/208 (37%), Gaps = 15/208 (7%)

Query: 38  DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLA 96
             E   EAA ++      S  +         VV+  + L+  S     +E+S  A+ NL 
Sbjct: 278 QAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQNLC 337

Query: 97  VRN----ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGA 152
                     +  +    A+  + +LL  ++  + + A+ A+  L+  A NK  I    A
Sbjct: 338 AGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GKHA 396

Query: 153 APLLVQILHSG--------SVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKD 203
            P LV+ L  G        S    +  +  ++ +     E +  + +   +  L+ + K 
Sbjct: 397 IPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKS 456

Query: 204 CKKYSKFAEKATALLEILSSSEEGRIAI 231
             +  K    A  +L+ +   +E R  +
Sbjct: 457 GNRSEKEVRAAALVLQTIWGYKELRKPL 484

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 77.7 bits (190), Expect = 9e-16
 Identities = 39/212 (18%), Positives = 75/212 (35%), Gaps = 20/212 (9%)

Query: 95  LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAA 153
            ++R             +P ++ +L F+   ++  AAA +  L       K  +      
Sbjct: 33  DSLRKGGPPPPNWRQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRNDKVKTDVRKLKGI 92

Query: 154 PLLVQILHSGSVQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFA 211
           P+LV +L     +  + A  AL  +S  +  +N   I +   VP L+ LL+  +      
Sbjct: 93  PVLVGLLDHPKKEVHLGACGALKNISFGRDQDNKIAIKNCDGVPALVRLLRKARD-MDLT 151

Query: 212 EKATALLEILSSSEEGRIAITNSDGGILTL----------------VETVEDGSLVSTQH 255
           E  T  L  LSS +  ++ I +     LT                  +           +
Sbjct: 152 EVITGTLWNLSSHDSIKMEIVDHALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTN 211

Query: 256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRL 287
             G L ++     +  R+L   +G +  L+ +
Sbjct: 212 TAGCLRNVSSERSEARRKLRECDGLVDALIFI 243

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A Length = 584

 Score = 63.0 bits (152), Expect = 5e-11
 Identities = 39/217 (17%), Positives = 74/217 (34%), Gaps = 19/217 (8%)

Query: 78  VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILT 136
           +       E++     N      R    +     +   + LLK  +   + E +A AI  
Sbjct: 276 IPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYISLLKESKTPAILEASAGAIQN 335

Query: 137 LSAAAPNKP-----AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA 191
           L A           A+    A   +  +L +   +    A  AL  L+    N   I   
Sbjct: 336 LCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDARNKELI-GK 394

Query: 192 TAVPPLINLLKDCKKYSKF-------AEKATALLEILSSSEEGRIAITNSDGGILTLVET 244
            A+P L+  L   ++ S +             + E+++ + E    +  +  GI  LV  
Sbjct: 395 HAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRET-QGIEKLVLI 453

Query: 245 VEDGSLVS--TQHAVGALLSLCQSCRDKYRQLILKEG 279
            + G+      + A   L ++      + R+ + KEG
Sbjct: 454 NKSGNRSEKEVRAAALVLQTIWGY--KELRKPLEKEG 488

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 92.7 bits (230), Expect = 4e-22
 Identities = 40/219 (18%), Positives = 84/219 (38%), Gaps = 24/219 (10%)

Query: 70  VQPLVLMLVSPNLDA--IESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLR 127
           ++  V ML + ++    I ++   + +   +    + ++     I  L++LLK QN  ++
Sbjct: 10  LERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQ 69

Query: 128 ELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTCKENS 185
                A+  L      NK  +A     P L+Q+L  +  ++ +      L  LS+  +  
Sbjct: 70  RAVCGALRNLVFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLK 129

Query: 186 SPILDATAVPPLINLLKDCKKYSK--------------FAEKATALLEILSSSEEGRIAI 231
           + ++    +    N++     + +              F      L  + S+  +GR A+
Sbjct: 130 NLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAM 189

Query: 232 TNSDGGILTLVETVEDGSL------VSTQHAVGALLSLC 264
              DG I +LV  V            +T++ V  L +L 
Sbjct: 190 RRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLS 228

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 88.5 bits (219), Expect = 1e-20
 Identities = 33/198 (16%), Positives = 68/198 (34%), Gaps = 19/198 (9%)

Query: 36  NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL 95
           +        AA  I+    + S + R        +  L+ +L   N D   +   AL NL
Sbjct: 21  HMLPSRISAAATFIQHECFQKS-EARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNL 79

Query: 96  AVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 154
              +  NK+++A    +P L+++LK  ++   ++     +  LS+    K  +       
Sbjct: 80  VFEDNDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITEALLT 139

Query: 155 LLVQILHSGSVQGRVD---------------AVTALHYLSTCKENSSPILDAT--AVPPL 197
           L   I+   S     D                   L  +S+   +    +      +  L
Sbjct: 140 LTENIIIPFSGWPEGDYPKANGLLDFDIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSL 199

Query: 198 INLLKDCKKYSKFAEKAT 215
           ++ ++      +  +KAT
Sbjct: 200 VHYVRGTIADYQPDDKAT 217

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens} Length = 233

 Score = 47.3 bits (112), Expect = 3e-06
 Identities = 22/160 (13%), Positives = 56/160 (35%), Gaps = 3/160 (1%)

Query: 191 ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSL 250
              +   +++L+           A   ++     +       N   GIL L++ ++  + 
Sbjct: 7   EMTLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNE 66

Query: 251 VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT-FEAQERA-RTLLDLLRD 308
              +   GAL +L     +  +  + +   +P LL++  +    E +++    L +L  +
Sbjct: 67  DVQRAVCGALRNLVFED-NDNKLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSN 125

Query: 309 TPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM 348
              +  + +  L  +  +I     G  +        L D 
Sbjct: 126 DKLKNLMITEALLTLTENIIIPFSGWPEGDYPKANGLLDF 165

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 86.8 bits (214), Expect = 1e-18
 Identities = 43/268 (16%), Positives = 80/268 (29%), Gaps = 37/268 (13%)

Query: 67  AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER------------------------- 101
              +  L+ +    N   +   +   +NL    E+                         
Sbjct: 420 KASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAKFAKQHIPEEHELD 479

Query: 102 -------NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP 154
                      +A  G    L  L K ++   +EL A  +  +      +  +   G   
Sbjct: 480 DVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQEGGVK 539

Query: 155 LLVQILHSGSVQGRVDAVTALHYLSTCKENS---SPILDATAVPPLINLLKDCKKYSKFA 211
            L+++   G+ +G+  A  AL  +          S       + PL+NLL+      +  
Sbjct: 540 ALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENF 599

Query: 212 EKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY 271
           E   AL  + S +E  R  I     G+  +   + +  L  T+ A   L +L     D  
Sbjct: 600 ESLMALTNLASMNESVRQRIIKE-QGVSKIEYYLMEDHLYLTRAAAQCLCNLV-MSEDVI 657

Query: 272 RQLILKEGAIPGLLRLTVEGTFEAQERA 299
           +        +  L  L  +   E     
Sbjct: 658 KMFEGNNDRVKFLALLCEDEDEETATAC 685

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 83.4 bits (205), Expect = 1e-17
 Identities = 61/359 (16%), Positives = 118/359 (32%), Gaps = 47/359 (13%)

Query: 8   NKAATDQEEEAWNQRKQALIEEL-SDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA 66
            +   +   +    R    I+E   DKL+  D+E+K+     I  ++           A 
Sbjct: 229 ARIYENMYYDEAKARFTDQIDEYIKDKLLAPDMESKVRVTVAITALLNGPLDVGNQVVAR 288

Query: 67  AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTL 126
            G++Q ++ M  + + +  +      L  A   +     +   G +  L  L   +N  +
Sbjct: 289 EGILQMILAMATTDD-ELQQRVACECLIAASSKKDKAKALCEQG-VDILKRLYHSKNDGI 346

Query: 127 RELAAAAILTLSAAAPNKPAI--AASGAAPLLVQIL------HSGSVQGRVDAVTALHYL 178
           R  A   +  L +      AI     GAA  L +               R  A   L YL
Sbjct: 347 RVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKPGKDKDIRRWAADGLAYL 406

Query: 179 STCKENSSPIL-DATAVPPLINLLKDCK-------------------------------K 206
           +   E    ++ D  ++  L++L +                                  K
Sbjct: 407 TLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEKQEMLPEMIELAK 466

Query: 207 YSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQS 266
           ++K        L+ +    +    + N  G    L    +  S  S +     L ++C  
Sbjct: 467 FAKQHIPEEHELDDVDFINKRITVLANE-GITTALCALAKTESHNSQELIARVLNAVCGL 525

Query: 267 CRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDLLRDTPQEKRLSSSVLEKIV 324
              + R  +++EG +  LLR+ +EGT + +  A + L  +      E   S      ++
Sbjct: 526 --KELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVI 582

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 75.3 bits (184), Expect = 6e-15
 Identities = 47/321 (14%), Positives = 95/321 (29%), Gaps = 43/321 (13%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV------LML 77
           +  ++ L     + +   ++ A   + K+               G    L       L+ 
Sbjct: 329 EQGVDILKRLYHSKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIK 388

Query: 78  VSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL 137
              + D    +   L  L +  E  +  I    +I  L++L +  N +         + L
Sbjct: 389 PGKDKDIRRWAADGLAYLTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNL 448

Query: 138 SAAAPNKP---------------------------------AIAASGAAPLLVQILHSGS 164
             A   +                                   +A  G    L  +  + S
Sbjct: 449 CNAYEKQEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTES 508

Query: 165 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224
              +      L+ +   KE    ++    V  L+ +  +  +  K      AL  I  + 
Sbjct: 509 HNSQELIARVLNAVCGLKELRGKVVQEGGVKALLRMALEGTEKGK-RHATQALARIGITI 567

Query: 225 E-EGRIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIP 282
             E   +   S   I  L+  ++ D + +    ++ AL +L  S  +  RQ I+KE  + 
Sbjct: 568 NPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLA-SMNESVRQRIIKEQGVS 626

Query: 283 GLLRLTVEGTFEAQERARTLL 303
            +    +E        A   L
Sbjct: 627 KIEYYLMEDHLYLTRAAAQCL 647

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster} Length = 810

 Score = 42.5 bits (99), Expect = 2e-04
 Identities = 44/251 (17%), Positives = 80/251 (31%), Gaps = 15/251 (5%)

Query: 76  MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAIL 135
           M ++ +   I S  LA +   +  +  K +         + + L   +   +     AI 
Sbjct: 214 MDITGSSSTIASVCLARIYENMYYDEAKARFTDQID-EYIKDKLLAPDMESKVRVTVAIT 272

Query: 136 TLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATA 193
            L     +     +A  G   +++ +  +     +  A   L   S+ K+ +  + +   
Sbjct: 273 ALLNGPLDVGNQVVAREGILQMILAMATTDDELQQRVACECLIAASSKKDKAKALCEQ-G 331

Query: 194 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITN-SDGGILTLVETVEDGSLVS 252
           V  L  L     K      +A   L  L S      AI    DG  L L E      +  
Sbjct: 332 VDILKRLYH--SKNDGIRVRALVGLCKLGSYGGQDAAIRPFGDGAALKLAEACRRFLIKP 389

Query: 253 T------QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA-RTLLDL 305
                  + A   L  L      K  +LI  + +I  L+ L   G          T ++L
Sbjct: 390 GKDKDIRRWAADGLAYLTLDAECK-EKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNL 448

Query: 306 LRDTPQEKRLS 316
                +++ L 
Sbjct: 449 CNAYEKQEMLP 459

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 81.2 bits (200), Expect = 1e-17
 Identities = 30/228 (13%), Positives = 74/228 (32%), Gaps = 13/228 (5%)

Query: 23  KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPN 81
            Q +     +     D + +  A   +  +    ++   ++F     +  LV   L +  
Sbjct: 38  SQPMPPTAGEAEQAADQQEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGA 95

Query: 82  LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA 141
                 +   +   +      + ++   GA+  L+ LL         +   A+  +S   
Sbjct: 96  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACD--TVRVKALFAISCLV 153

Query: 142 ----PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPP 196
                            +L++ +     + +V +   L  L     E+   +     V  
Sbjct: 154 REQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQ 213

Query: 197 LINLLKDCKKYSKFAEKA-TALLEILSSSEEGRIAITNSDGGILTLVE 243
           L+ L++   ++S F E    AL  +++   +G       + G+  L+ 
Sbjct: 214 LVALVRT--EHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLR 259

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 77.0 bits (189), Expect = 4e-16
 Identities = 59/285 (20%), Positives = 93/285 (32%), Gaps = 15/285 (5%)

Query: 38  DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV 97
            L  +    R  R  V++  +K+     +  +         + +    E +L  L +L  
Sbjct: 12  GLVPRGSHMRGQRGEVEQ--MKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADL-C 68

Query: 98  RNERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPL 155
            N  N         +  LV   L+     LR  AA  I T S      +  +   GA   
Sbjct: 69  ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK 128

Query: 156 LVQIL-HSGSVQGRVDAVTALHYLST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEK 213
           L+++L        RV A+ A+  L    +      L       L+  ++   +  K   K
Sbjct: 129 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQ--QVQKLKVK 186

Query: 214 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273
           +  LL+ L            S G +  LV  V        +H +GAL SL        R+
Sbjct: 187 SAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRE 246

Query: 274 LILKEGAIPGLLRLTV------EGTFEAQERARTLLDLLRDTPQE 312
               E  +  LLR         E   E  E    LL     +P +
Sbjct: 247 CREPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPAD 291

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 74.3 bits (182), Expect = 4e-15
 Identities = 35/223 (15%), Positives = 76/223 (34%), Gaps = 10/223 (4%)

Query: 13  DQEEEAWNQRKQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQ 71
           +  + A +  + + +  L  + +  G    +  AA+ I    +  +   + +    G ++
Sbjct: 69  ENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVA-AIQEQVLGLGALR 127

Query: 72  PLVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELA 130
            L+ +L           +L A+  L    E   ++         L+  ++ Q   L+  +
Sbjct: 128 KLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKS 187

Query: 131 AAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL 189
           A  +  L    P +K  + + G    LV ++ +         + AL  L T         
Sbjct: 188 AFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVREC 247

Query: 190 DATAVP------PLINLLKDCKKYSKFAEKATALLEILSSSEE 226
               +           LL+  ++Y +  E    LL+   SS  
Sbjct: 248 REPELGLEELLRHRCQLLQQHEEYQEELEFCEKLLQTCFSSPA 290

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A* Length = 296

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 21/169 (12%), Positives = 49/169 (28%), Gaps = 1/169 (0%)

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCK 205
            + +    P   +   +   Q R  A+  L  L    +N++     + +  L+    +  
Sbjct: 35  RVLSQPMPPTAGEAEQAADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAG 94

Query: 206 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265
                   A  +     +    +  +         L     D        A+ A+  L +
Sbjct: 95  AAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVR 154

Query: 266 SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR 314
              +      L+      L+R   +   + + ++  LL  L     E +
Sbjct: 155 EQ-EAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHK 202

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 57.5 bits (138), Expect = 4e-09
 Identities = 23/140 (16%), Positives = 48/140 (34%), Gaps = 7/140 (5%)

Query: 100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQI 159
             N+  I     I  L   +   +   ++     I  ++ +    P +A  GA  ++++ 
Sbjct: 447 LFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNFIPQLAQQGAVKIILEY 506

Query: 160 LHSGSVQGRVDAVTALHYLSTCKENSSPIL------DATAVPPLINLLKDCKKYSKFAEK 213
           L +    G    +     L+     ++P L         A+P L  LL            
Sbjct: 507 LANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLH 566

Query: 214 ATALLEILSSSEEGRIAITN 233
               +++  +  E  +A+TN
Sbjct: 567 NDEQIKLTDNY-EALLALTN 585

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae} Length = 778

 Score = 43.6 bits (102), Expect = 8e-05
 Identities = 38/384 (9%), Positives = 102/384 (26%), Gaps = 75/384 (19%)

Query: 4   EENKNKAATDQEEEAWNQRKQALIEE-----LSDKLINGDLETKIEAARDIRKVVKKSSL 58
             +K  A    +E+     ++ ++       L  ++ N     K +  R I  + +    
Sbjct: 431 AADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSK-- 488

Query: 59  KTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLA-----VRNERNKVKIATAGAIP 113
               + A  G V+ ++  L +         +L    L              K +   AIP
Sbjct: 489 NFIPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIP 548

Query: 114 PLVELLKFQNGTLREL--------------AAAAILTLSAAAPN------KPAIAASGAA 153
            L ELL                        A  A+  L+++  +      K  ++     
Sbjct: 549 FLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYW 608

Query: 154 PLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK 213
             +  ++   +V  +   +  +  + +     +        P  +               
Sbjct: 609 STIENLMLDENVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFN----------- 657

Query: 214 ATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273
              +L  L    +                           +       ++  +     ++
Sbjct: 658 ---ILVKLLQLSDVESQ-----------------------RAVAAIFANIATTIPLIAKE 691

Query: 274 LILKEGAIPGLLRLTVEGTFEAQERART------LLDLLRDTPQEKRLSSSVLEKIVYDI 327
           L+ K+  I   +++  +   + + R R       L +++ D    +        + + D 
Sbjct: 692 LLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDA 751

Query: 328 AARVDGADKAAETAKRLLQDMVQR 351
                    +       +  ++ +
Sbjct: 752 LNMSLKRGDSGPEFSAAIPVILAK 775

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 56.0 bits (134), Expect = 1e-08
 Identities = 55/411 (13%), Positives = 124/411 (30%), Gaps = 102/411 (24%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF-------AAAGVVQPLVLM 76
            A ++    K +  D+   I +  +I  ++      + +             +VQ  V  
Sbjct: 27  DAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEE 85

Query: 77  LVSPN----LDAI-----ESSLLALLNLAVRNE-RNKVKIATAGAIPPLVELLKFQNGTL 126
           ++  N    +  I     + S++  + +  R+   N  ++     +  L   LK +   L
Sbjct: 86  VLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-L 144

Query: 127 RELAAAAILTLSA-AAPNKPAIAASGAAPLLVQILHSGSV-----------QGRVDAVTA 174
            EL  A  + +       K  +A        VQ      +           +  ++ +  
Sbjct: 145 LELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQK 204

Query: 175 LHYLSTCKENSSPILDATAVPPL-INLLKDCKKYSKFAEK--ATALLEIL---SSSE--- 225
           L Y       S    D ++   L I+ ++   +      K     LL +L    +++   
Sbjct: 205 LLYQIDPNWTSRS--DHSSNIKLRIHSIQAELRR-LLKSKPYENCLL-VLLNVQNAKAWN 260

Query: 226 ----EGRIAITNSDGGILTLV-------ETVEDGSLVSTQHAVGALLSLCQSCR------ 268
                 +I +T     +   +        +++  S+  T   V +LL     CR      
Sbjct: 261 AFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR 320

Query: 269 ------------------------DKYRQLILKEGAIPGLLRLTVEGTFEAQERA--RTL 302
                                   D ++ +   +      L   +E +    E A  R +
Sbjct: 321 EVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDK------LTTIIESSLNVLEPAEYRKM 374

Query: 303 LDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSM 353
            D L   P    + + +L  +++         D        ++  + + S+
Sbjct: 375 FDRLSVFPPSAHIPTILLS-LIW--------FDVIKSDVMVVVNKLHKYSL 416

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 44.5 bits (104), Expect = 5e-05
 Identities = 50/335 (14%), Positives = 85/335 (25%), Gaps = 129/335 (38%)

Query: 7   KNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAA 66
           + K  TD    A        ++  S  L      T  E    + K +         E   
Sbjct: 273 RFKQVTDFLSAA--TTTHISLDHHSMTL------TPDEVKSLLLKYLDCRPQDLPRE--- 321

Query: 67  AGVVQPLVLMLVS---------------PNLD----AIESSLLAL---------LNLAVR 98
                P  L +++                N D     IESSL  L           L+V 
Sbjct: 322 VLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVF 381

Query: 99  NERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLV 157
                  I      P ++  L+ + +    +     ++        K ++         +
Sbjct: 382 PP--SAHI------PTILLSLI-WFDVIKSD--VMVVVNKLH----KYSLVEKQPKESTI 426

Query: 158 QILHSG--SVQGRVDAVTALH------Y---LSTCKENSSPI------------------ 188
            I  S    ++ +++   ALH      Y    +   ++  P                   
Sbjct: 427 SI-PSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE 485

Query: 189 ------------LD--------------ATAVPPLINLLKDCKKYSKF--------AEKA 214
                       LD                A   ++N L+  K Y  +            
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLV 545

Query: 215 TALLEILSSSEEG----------RIAITNSDGGIL 239
            A+L+ L   EE           RIA+   D  I 
Sbjct: 546 NAILDFLPKIEENLICSKYTDLLRIALMAEDEAIF 580

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A Length = 651

 Score = 47.4 bits (112), Expect = 5e-06
 Identities = 40/248 (16%), Positives = 84/248 (33%), Gaps = 33/248 (13%)

Query: 91  ALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 150
             L   +  +    +   A  I  L + +   + TL +    A+  L + +         
Sbjct: 2   NFLRGVMGGQSAGPQHTEAETIQKLCDRV--ASSTLLDDRRNAVRALKSLSKKYRLEVGI 59

Query: 151 GAAPLLVQILHSGSVQGRV--DAVTALHYLSTCKENSSP-------------------IL 189
            A   L+ +L +      +   A+  L+ + +  E                       I 
Sbjct: 60  QAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIK 119

Query: 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI--AITNSDGGILTLVETVED 247
               V  L++LL++   + ++      LL  L      ++   I  S  G+  L++ + D
Sbjct: 120 QQENVTLLLSLLEEFDFHVRWP--GVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLAD 177

Query: 248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRL-----TVEGTFEAQERARTL 302
              V     V  L +L +S     ++++  E A   LL +       +G    ++    L
Sbjct: 178 SREVIRNDGVLLLQALTRSNGA-IQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILL 236

Query: 303 LDLLRDTP 310
            +LL++  
Sbjct: 237 QNLLKNNN 244

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic} Length = 211

 Score = 40.4 bits (95), Expect = 3e-04
 Identities = 38/177 (21%), Positives = 61/177 (34%), Gaps = 43/177 (24%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           +E     L +     +  AA  + K                  V+PL+  L   +     
Sbjct: 21  VEMYIKNLQDDSYYVRRAAAYALGK------------IGDERAVEPLIKALKDEDAWVRR 68

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146
           ++  AL            +I    A+ PL++ LK ++G +R+ AA A+  +         
Sbjct: 69  AAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----- 112

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
                A   L++ L       R+ A  AL  +           D  AV PLI  LKD
Sbjct: 113 -----AVEPLIKALKDEDWFVRIAAAFALGEIG----------DERAVEPLIKALKD 154

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16 Length = 131

 Score = 39.2 bits (92), Expect = 3e-04
 Identities = 18/93 (19%), Positives = 31/93 (33%), Gaps = 21/93 (22%)

Query: 111 AIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVD 170
            + P    +  +N  +R   + A+  +              A   L++ L +   + R  
Sbjct: 13  GLVPRGSHMADENKWVRRDVSTALSRMGDE-----------AFEPLLESLSNEDWRIRGA 61

Query: 171 AVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
           A   +              D  AV PLI LL+D
Sbjct: 62  AAWII----------GNFQDERAVEPLIKLLED 84

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic} Length = 201

 Score = 39.2 bits (92), Expect = 8e-04
 Identities = 38/177 (21%), Positives = 62/177 (35%), Gaps = 43/177 (24%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           +E     L +     +  AA  + K+                 V+PL+  L   +     
Sbjct: 16  VEMYIKNLQDDSYYVRRAAAYALGKI------------GDERAVEPLIKALKDEDAWVRR 63

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA 146
           ++  AL            +I    A+ PL++ LK ++G +R+ AA A+  +         
Sbjct: 64  AAADAL-----------GQIGDERAVEPLIKALKDEDGWVRQSAAVALGQIGDER----- 107

Query: 147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD 203
                A   L++ L       R+ A  AL  +           D  AV PLI  LKD
Sbjct: 108 -----AVEPLIKALKDEDWFVRIAAAFALGEIG----------DERAVEPLIKALKD 149

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	375
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
3ul1_B	510	Importin subunit alpha-2; arm repeat, armadillo re	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
3tpo_A	529	Importin subunit alpha-2; nuclear import, protein	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
1xm9_A	457	Plakophilin 1; armadillo repeat, cell adhesion; 2.	100.0
3l6x_A	584	Catenin delta-1; catenin, armadillo, ARM, JMD, CE	100.0
4b8j_A	528	Importin subunit alpha-1A; transport protein, nucl	100.0
3nmz_A	458	APC variant protein; protein-protein complex, arma	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
3now_A	810	UNC-45 protein, SD10334P; armadillo repeat, HSP90,	100.0
1wa5_B	530	Importin alpha subunit; nuclear transport/complex,	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	100.0
3nmw_A	354	APC variant protein; ARMADIILO repeats domain, cel	100.0
2jdq_A	450	Importin alpha-1 subunit; transport, PB2 subunit,	99.98
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
1jdh_A	529	Beta-catenin; beta-catenin, protein-protein comple	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
2z6h_A	644	Catenin beta-1, beta-catenin; C-terminal domain, a	99.97
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.97
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
4hxt_A	252	De novo protein OR329; structural genomics, PSI-bi	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
4db8_A	252	Armadillo-repeat protein; solenoid repeat, de novo	99.96
2z6g_A	780	B-catenin; FULL-length, beta-catenin, cell adhesio	99.96
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.94
3tt9_A	233	Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.93
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.93
3opb_A	778	SWI5-dependent HO expression protein 4; heat and a	99.92
4db6_A	210	Armadillo repeat protein; solenoid repeat, armadil	99.92
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.89
1xqr_A	296	HSPBP1 protein; armadillo repeat, superhelical twi	99.88
3grl_A	651	General vesicular transport factor P115; vesicle t	99.73
3grl_A	651	General vesicular transport factor P115; vesicle t	99.66
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.63
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.56
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.52
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.5
4fdd_A	852	Transportin-1; heat repeats, karyopherin, nuclear	99.49
3ltm_A	211	Alpha-REP4; protein engineering, heat-like repeat,	99.48
1b3u_A	588	Protein (protein phosphatase PP2A); scaffold prote	99.48
1oyz_A	280	Hypothetical protein YIBA; structural genomics, PS	99.48
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.47
3ltj_A	201	Alpharep-4; protein engineering, heat-like repeat,	99.46
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.41
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.35
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.35
2vgl_B	591	AP-2 complex subunit beta-1; cytoplasmic vesicle,	99.35
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.25
2bpt_A	861	Importin beta-1 subunit; nuclear transport, nucleo	99.23
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.23
1ibr_B	462	P95, importin beta-1 subunit, nuclear factor; smal	99.22
1qgr_A	876	Protein (importin beta subunit); transport recepto	99.19
4gmo_A	684	Putative uncharacterized protein; ARM, heat, solen	99.14
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.11
1w63_A	618	Adapter-related protein complex 1 gamma 1 subunit;	99.06
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	99.02
1u6g_C	1230	TIP120 protein, CAND1; cullin repeat, heat repeat,	98.99
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.92
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.9
2vgl_A	621	Adaptor protein complex AP-2, alpha 2 subunit; cyt	98.69
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	98.67
3b2a_A	265	TON_1937, putative uncharacterized protein; heat-r	98.65
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.56
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.55
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.54
2qk2_A	242	LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2	98.51
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.44
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.3
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.3
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.29
2qk1_A	249	Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, h	98.28
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	98.25
2db0_A	253	253AA long hypothetical protein; heat repeats, hel	98.21
1te4_A	131	Conserved protein MTH187; methanobacterium thermoa	98.18
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	98.17
2iw3_A	986	Elongation factor 3A; acetylation, ATP-binding, pr	98.04
3tjz_B	355	Coatomer subunit gamma; protein trafficking, golgi	98.02
3dad_A	339	FH1/FH2 domain-containing protein 1; formin, FHOD1	97.99
1ho8_A	480	Vacuolar ATP synthase subunit H; heat repeat, hydr	97.74
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.3
2fv2_A	268	RCD1 required for cell differentiation1 homolog; a	97.28
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.26
1wa5_C	960	Importin alpha RE-exporter; nuclear transport/comp	97.22
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	97.16
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	97.16
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.99
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.93
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.72
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	96.66
2x1g_F	971	Cadmus; transport protein, developmental protein,	96.65
3oc3_A	800	Helicase MOT1, MOT1; regulation of transcription,	96.53
2of3_A	266	ZYG-9; multifunctional macromolecule, kinetochore,	96.49
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	96.39
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	96.36
4ffb_C	278	Protein STU2; tubulin fold, heat repeats, cytoskel	96.35
2x19_B	963	Importin-13; nuclear transport, protein transport;	96.35
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	95.67
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.6
1lrv_A	244	LRV, leucine-rich repeat variant; leucine-rich rep	95.51
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	95.36
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	95.31
3ebb_A	304	Phospholipase A2-activating protein; armadillo rep	95.03
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	94.75
1upk_A	341	MO25 protein; transferase, armadillo; HET: MSE; 1.	94.24
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	94.24
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	94.07
4hat_C	1023	Exportin-1; heat repeat, nuclear export, RAN-ranbp	93.97
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	93.65
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	93.57
3ibv_A	980	Exportin-T; karyopherin, heat repeat, cytoplasm, n	93.2
3m1i_C	1049	Exportin-1; heat repeat, GTP-binding, nucleotide-b	93.08
2f31_A	233	Diaphanous protein homolog 1; formin,MDIA1, protei	93.06
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	92.52
3eg5_B	383	Protein diaphanous homolog 1; protein-protein comp	92.19
3a6p_A	1204	Exportin-5; exportin-5, RANGTP, nuclearexport, imp	92.16
1lsh_A	1056	Lipovitellin (LV-1N, LV-1C); vitellogenin, lipopro	91.45
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	91.34
2bnx_A	386	Diaphanous protein homolog 1; autoinhibition, acti	91.1
3u0r_A	507	Apoptosis inhibitor 5; heat repeat, armadillo repe	90.58
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	89.82
3qml_C	315	Protein SLS1, nucleotide exchange factor SIL1; arm	89.27
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	88.85
3c2g_A	619	SYS-1 protein; beta-catenin, phylogeny, SYS-1, dev	88.48
3gjx_A	1073	Exportin-1; transport, cytoplasm, nucleus, RNA-bin	87.87
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.64
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	87.4
1mhq_A	148	ADP-ribosylation factor binding protein GGA2; supe	87.0
3ldz_A	140	STAM-1, signal transducing adapter molecule 1; ubi	86.57
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	86.46
1x5b_A	163	Signal transducing adaptor molecule 2; VHS domain,	86.4
3g2s_A	149	C-terminal fragment of sortilin-related receptor;	86.31
1juq_A	171	ADP-ribosylation factor binding protein GGA3; prot	84.28
3l9t_A	240	Putative uncharacterized protein SMU.31; hypotheti	83.58
1vdy_A	140	Hypothetical protein (RAFL09-17-B18); structural g	82.14
3o2t_A	386	Symplekin; heat repeat, scaffold, protein binding;	81.82

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=5.5e-37  Score=291.84  Aligned_cols=331  Identities=18%  Similarity=0.198  Sum_probs=279.0

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcC------------CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCCh----------H
Q 017249           14 QEEEAWNQRKQALIEELSDKLIN------------GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV----------Q   71 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s------------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v----------~   71 (375)
                      +...|..+.+.|.+|.||++|+.            ++++.+.+|+|+|.|++.+. ++......+.|++          +
T Consensus        59 ~~~~~~~~~~~g~~p~lv~~l~~~~~~~~~~~~~~~~~~~~~~a~~al~ni~~~~-~~~~~~~~~~~~~~~l~~~~~~~~  137 (458)
T 3nmz_A           59 SQDSCISMRQSGCLPLLIQLLHGNDKDSVLLGNSRGSKEARARASAALHNIIHSQ-PDDKRGRREIRVLHLLEQIRAYCE  137 (458)
T ss_dssp             STTHHHHHHHHTCHHHHHHHHTCTTCCSCC---CCCCHHHHHHHHHHHHHHHHHS-CSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHCCCHHHHHHHHhcccccccccccccCCHHHHHHHHHHHHHHHccC-cchhHHHHHHHHHHHHHHhhhhhH
Confidence            34567888999999999999985            33799999999999999999 6666666666766          6


Q ss_pred             HHHHhhCCCC--HH-----HHH-------HHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-----------CChHH
Q 017249           72 PLVLMLVSPN--LD-----AIE-------SSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-----------QNGTL  126 (375)
Q Consensus        72 ~Lv~~L~~~~--~~-----~~~-------~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~  126 (375)
                      .+++++.+..  .+     +++       +|+++|.|++. ++++|..+.+.|++++|+.+|..           .++.+
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qAv~aL~nls~-~~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l  216 (458)
T 3nmz_A          138 TCWEWQEAHEPGMDQDKNPMPAPVEHQICPAVCVLMKLSF-DEEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITL  216 (458)
T ss_dssp             HHHHHHTTTSSSSCCCSCC--CCCTTTTHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHH
T ss_pred             HHHHHHHhhccccccccCCccchhhHHHHHHHHHHHHhcC-CHHHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHH
Confidence            6777777652  12     444       99999999988 58999999999999999999952           24678


Q ss_pred             HHHHHHHHHHhhccCC-ChhHHHh-cCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhh
Q 017249          127 RELAAAAILTLSAAAP-NKPAIAA-SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLK  202 (375)
Q Consensus       127 ~~~a~~~L~~Ls~~~~-~~~~i~~-~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~  202 (375)
                      ++.|+++|.||+.+++ ++..+.. .|+++.|+.+|++++..++..|+++|.||+..  ++++..+++.|+++.|+++|.
T Consensus       217 ~~~Aa~aL~nLa~~~~~~k~~i~~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl  296 (458)
T 3nmz_A          217 RRYAGMALTNLTFGDVANKATLCSMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECAL  296 (458)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCCCcccHHHHHHcCCcHHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHh
Confidence            9999999999998876 5556654 56699999999999999999999999999975  467888999999999999865


Q ss_pred             hcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCCh----HHHHHHHHHHHHhcc---cCcHHHHHH
Q 017249          203 DCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQL  274 (375)
Q Consensus       203 ~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~  274 (375)
                      ++. +..+++.++++|+||+. +++++..+....|+++.|+.+|.++++    .+++.|+++|+|++.   .. ++.+..
T Consensus       297 ~s~-~~~v~~~A~~aL~nLs~~~~~nk~~I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~  374 (458)
T 3nmz_A          297 EVK-KESTLKSVLSALWNLSAHCTENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQI  374 (458)
T ss_dssp             TCC-SHHHHHHHHHHHHHHHHHCHHHHHHHHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTC-HHHHHH
T ss_pred             cCC-CHHHHHHHHHHHHHHccCCHHHHHHHHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCC-HHHHHH
Confidence            533 45678899999999998 778888887568999999999987654    489999999999997   44 578999


Q ss_pred             HHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          275 ILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       275 l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      +.+.|+++.|+.++.+++..+++.|+++|.+|+... .+  .+++.|++++|+..|.   .++++.++.|..+|.+|...
T Consensus       375 i~~~G~i~~Lv~LL~~~~~~v~~~A~~aL~nLa~~~~~~~~~i~~~G~I~~Lv~LL~---s~~~~v~~~Aa~AL~nL~~~  451 (458)
T 3nmz_A          375 LRENNCLQTLLQHLKSHSLTIVSNACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMAN  451 (458)
T ss_dssp             HHHTTHHHHHHHHSSCSCHHHHHHHHHHHHHHHSSCHHHHHHHHHHTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTC
T ss_pred             HHHcccHHHHHHHHcCCChHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcC
Confidence            999999999999999999999999999999999544 22  6788999999998774   56799999999999999754

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=7e-36  Score=291.65  Aligned_cols=326  Identities=16%  Similarity=0.208  Sum_probs=285.3

Q ss_pred             HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+.+.|.+|.||++|+ ++++++|.+|+|+|.+++.++ ++++..+++.|++|.|+.+|++++.++++.|+++|+||+.
T Consensus        94 ~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~-~e~~~~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~  172 (510)
T 3ul1_B           94 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  172 (510)
T ss_dssp             HHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHh
Confidence            45678899999999997 567899999999999999988 8899999999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                      +++.+|..+.+.|++++|+.++.+.+     ..+...++++|.+++.+.... ......++++.|+.+|.+++..++..+
T Consensus       173 d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~A  252 (510)
T 3ul1_B          173 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  252 (510)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHHCCCSSCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             CCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHHhhcccchhHHHHHHhHHHHHHHHHhcCCHHHHHHH
Confidence            99999999999999999999998764     346788999999999876543 344457889999999999999999999


Q ss_pred             HHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccCC
Q 017249          172 VTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDGS  249 (375)
Q Consensus       172 ~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~  249 (375)
                      +++|.+|+..++ ....+...|+++.|+.++.++  +..++..++++|+|++...+ .+..++ +.|+++.|+.+|.+++
T Consensus       253 ~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~--~~~v~~~al~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~  329 (510)
T 3ul1_B          253 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPK  329 (510)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGCC-CTTCSS
T ss_pred             HHHHHHHhhchhhhHHHHHhcccchhhhhhhcCC--ChhhhhHHHHHHHHhhcCCHHHHHHHh-hccchHHHHHHhcCCC
Confidence            999999998764 455667899999999999976  45788999999999987654 445555 7899999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh-h---hhhhhhhHHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ-E---KRLSSSVLEKIVY  325 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~-~---~~~~~g~~~~l~~  325 (375)
                      +.++..|+|+|.|++.+. +..+..+.+.|+++.|+.++.++++.+|+.|+++|.+++.+.. +   .+++.|++++|+.
T Consensus       330 ~~v~~~A~~aL~nl~a~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~~g~i~~L~~  408 (510)
T 3ul1_B          330 TNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  408 (510)
T ss_dssp             HHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCc-HHHHHHHHhcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHH
Confidence            999999999999999987 5778889999999999999999999999999999999987542 2   5778999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          326 DIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       326 ~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      .|.   ...++....+..+|.++.+.+
T Consensus       409 LL~---~~d~~i~~~~L~aL~nil~~~  432 (510)
T 3ul1_B          409 LLS---AKDTKIIQVILDAISNIFQAA  432 (510)
T ss_dssp             GGG---CSCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc---CCCHHHHHHHHHHHHHHHHHh
Confidence            885   344889999999999998654

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=3.1e-35  Score=288.44  Aligned_cols=326  Identities=16%  Similarity=0.205  Sum_probs=286.2

Q ss_pred             HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+.+.|.+|.||.+|. +++++.+..|+++|.+++.++ ++....+++.|+++.|+.+|.+++.++++.|+++|++|+.
T Consensus       113 ~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~-~~~~~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~  191 (529)
T 3tpo_A          113 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  191 (529)
T ss_dssp             HHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhc
Confidence            45678899999999997 567999999999999999998 7888899999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                      +++.+|..+.+.|++++|+.+|...+     ..+...++++|.+++.+... .......++++.|+.+|.++++.++..+
T Consensus       192 ~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl~~~~~~~~~~~~~~~~lp~L~~LL~~~~~~v~~~a  271 (529)
T 3tpo_A          192 AGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  271 (529)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHHHHCCCTTCCCHHHHHHHHHHHHHHTTSSCHHHHHHH
T ss_pred             cCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHHHHhcccchhhHHHHhhHHHHHHHHhcCCcHHHHHHH
Confidence            99999999999999999999998654     35678899999999988654 3444457899999999999999999999


Q ss_pred             HHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccCC
Q 017249          172 VTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDGS  249 (375)
Q Consensus       172 ~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~  249 (375)
                      +|+|.+|+..++ ....+...|+++.|+.++.++  +..++..++++|+|++...+ .+..++ +.|+++.|+.+|.+++
T Consensus       272 ~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~--~~~v~~~a~~aL~nl~~~~~~~~~~i~-~~g~l~~L~~LL~~~~  348 (529)
T 3tpo_A          272 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPK  348 (529)
T ss_dssp             HHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSS
T ss_pred             HHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCC--ChhHHHHHHHHHHHHHccchHHHHHHh-hcccHHHHHHHHcCCC
Confidence            999999998764 456677899999999999876  45788999999999987554 455555 7899999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh---hhhhhhhHHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE---KRLSSSVLEKIVY  325 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~---~~~~~g~~~~l~~  325 (375)
                      +.++..|+|+|.|++.+. +..+..+.+.|+++.|+.++.++++.+++.|+++|.+++.+. ++   .+++.|++++|+.
T Consensus       349 ~~i~~~a~~aL~nl~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nl~~~~~~~~~~~l~~~g~i~~L~~  427 (529)
T 3tpo_A          349 TNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKAAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  427 (529)
T ss_dssp             HHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc-HHHHHHHHhcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCcCHHHHHH
Confidence            999999999999999987 577888999999999999999999999999999999998654 22   5778999999999


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          326 DIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       326 ~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      .|.   ..+++....+..+|.++.+.+
T Consensus       428 LL~---~~d~~i~~~~L~aL~nil~~~  451 (529)
T 3tpo_A          428 LLS---AKDTKIIQVILDAISNIFQAA  451 (529)
T ss_dssp             GGG---CSCHHHHHHHHHHHHHHHHHH
T ss_pred             Hhc---CCCHHHHHHHHHHHHHHHHHh
Confidence            885   344888899999999998653

>3ul1_B Importin subunit alpha-2; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 1.90A {Mus musculus} PDB: 3ukx_B 3uky_B 3ukz_B 3ukw_B 3ul0_B 3oqs_A 3rz9_A 3rzx_A 3uvu_A 1q1s_C 1q1t_C 3knd_A 1ejy_I 1iq1_C 1ejl_I 1pjn_B 1pjm_B 3q5u_A 3fey_C 3fex_C ...

Probab=100.00  E-value=2.1e-35  Score=288.31  Aligned_cols=331  Identities=17%  Similarity=0.217  Sum_probs=286.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      .++.+|+.++|+|++.|..|+..++++.........+.+++.|+||.||++|++ ++++++..|+|+|+||+.++++++.
T Consensus        58 ~i~~~v~~l~s~d~~~q~~a~~~~rklls~e~~ppi~~ii~~G~ip~LV~lL~~~~~~~lq~~Aa~aL~nias~~~e~~~  137 (510)
T 3ul1_B           58 SVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQTK  137 (510)
T ss_dssp             CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSCCCHHHHHHTTHHHHHHHHTTCTTCHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHHH
Confidence            489999999999999999999999998765523457889999999999999975 4689999999999999998999999


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCC-----HHHHHHHHHHHHHh
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGS-----VQGRVDAVTALHYL  178 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L  178 (375)
                      .+++.|++|.|+.+|.++++++++.|+++|+||+.+.+ .+..+...|++++|+.+|.+++     ...+..++++|.++
T Consensus       138 ~vv~~GaIp~Lv~lL~s~~~~v~e~A~~aL~nLa~d~~~~r~~v~~~G~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~nl  217 (510)
T 3ul1_B          138 AVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNL  217 (510)
T ss_dssp             HHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHcCChHHHHHHHHhccchhhhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999998754 6788889999999999998765     35688999999999


Q ss_pred             ccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249          179 STCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV  257 (375)
Q Consensus       179 ~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~  257 (375)
                      +.+......+ ...++++.|++++.+.  +..++..++++|++|+..+..+..++...|+++.|+.+|.+++..++..++
T Consensus       218 ~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~al  295 (510)
T 3ul1_B          218 CRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPAL  295 (510)
T ss_dssp             HCCCSSCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHHH
T ss_pred             hhcccchhHHHHHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHHhhchhhhHHHHHhcccchhhhhhhcCCChhhhhHHH
Confidence            9876554444 3468999999999876  457888999999999987776666555789999999999999999999999


Q ss_pred             HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249          258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      ++|+|++.++ +.....+++.|+++.|+.++.++++.+++.|+++|.+++...+.   .++..|+++.|+..|.   +++
T Consensus       296 ~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~v~~~A~~aL~nl~a~~~~~~~~v~~~g~i~~Lv~lL~---~~~  371 (510)
T 3ul1_B          296 RAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KAD  371 (510)
T ss_dssp             HHHHHHTTSC-HHHHHHHHHTTGGGGCC-CTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---SSC
T ss_pred             HHHHHhhcCC-HHHHHHHhhccchHHHHHHhcCCCHHHHHHHHHHHHHHHcCcHHHHHHHHhcCCHHHHHHHHc---CCC
Confidence            9999999887 57788889999999999999999999999999999999987743   5778899999998886   566


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQRSMELSMTRIQQ  362 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~~s~~~~~~~~~~  362 (375)
                      .+.+..|..+|.++...+-..+...+.+
T Consensus       372 ~~v~~~Aa~aL~Nl~~~~~~~~~~~L~~  399 (510)
T 3ul1_B          372 FKTQKEAAWAITNYTSGGTVEQIVYLVH  399 (510)
T ss_dssp             HHHHHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            9999999999999986544444444443

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=7.1e-36  Score=299.41  Aligned_cols=337  Identities=15%  Similarity=0.106  Sum_probs=291.7

Q ss_pred             cchhhhHHHHHh-hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCCh-----------------------------hh
Q 017249           11 ATDQEEEAWNQR-KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSL-----------------------------KT   60 (375)
Q Consensus        11 ~~~~~~~~~~~~-~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~-----------------------------~~   60 (375)
                      .+.+.+.+..+. +.+++|.||.+|+++++..+..|+++|.|++.+. +                             ..
T Consensus       406 LS~~~~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~-d~q~~~~~l~~la~~s~~~v~~~~~ld~~~~v  484 (810)
T 3now_A          406 LTLDAECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAY-EKQEMLPEMIELAKFAKQHIPEEHELDDVDFI  484 (810)
T ss_dssp             HTTSHHHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCS-CCCCCCCSCGGGTTTTCCSCCCSSCHHHHHHH
T ss_pred             HhCCcHHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCc-hhhhhhHHHHHHHHHhhccCccccccccHHHH
Confidence            345677788877 5799999999999999999999999999999854 1                             12


Q ss_pred             H---HHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249           61 R---SEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL  137 (375)
Q Consensus        61 ~---~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  137 (375)
                      +   ..+++.|+++.|+.+|+++++.+++.|+|+|.|++. ++++|..+++.|++|+|+.+|.++++..++.|+++|.+|
T Consensus       485 ~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~-d~~~r~~Vv~~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL  563 (810)
T 3now_A          485 NKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCG-LKELRGKVVQEGGVKALLRMALEGTEKGKRHATQALARI  563 (810)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHT-SHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            2   577899999999999999999999999999999997 678999999999999999999999999999999999999


Q ss_pred             hccCCChhHHH---hcCChHHHHHHhccCC-HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249          138 SAAAPNKPAIA---ASGAAPLLVQILHSGS-VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAE  212 (375)
Q Consensus       138 s~~~~~~~~i~---~~~~l~~L~~lL~~~~-~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  212 (375)
                      +.+.+....+.   ..+++++|+++|.++. ...+..|+++|.||+..+ +++..+++.|+++.|+.++.+++  ..++.
T Consensus       564 ~~~~~p~~~~~~~~~~~aIppLv~LL~~~~~~l~~~eAl~AL~NLa~~~d~~~~~Ii~aG~l~~Lv~LL~s~~--~~Vq~  641 (810)
T 3now_A          564 GITINPEVSFSGQRSLDVIRPLLNLLQQDCTALENFESLMALTNLASMNESVRQRIIKEQGVSKIEYYLMEDH--LYLTR  641 (810)
T ss_dssp             HHHSCHHHHTTTHHHHHTHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHHSCC--TTHHH
T ss_pred             hcCCChhhhhcchhhhcHHHHHHHHhCCCCcHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCHHHHHHHHcCCC--HHHHH
Confidence            87654333221   2469999999998663 345678999999999874 67888999999999999999864  46889


Q ss_pred             HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhC
Q 017249          213 KATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEG  291 (375)
Q Consensus       213 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~  291 (375)
                      .|+++|+||+.+++.+..++...|.++.|+.++.+.+..++..|+|+|+|++.++ +...+.+++ .|+++.|+.++.++
T Consensus       642 ~A~~~L~NLa~~~~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALanLt~~s-~~~~~~ii~~~g~I~~Lv~LL~s~  720 (810)
T 3now_A          642 AAAQCLCNLVMSEDVIKMFEGNNDRVKFLALLCEDEDEETATACAGALAIITSVS-VKCCEKILAIASWLDILHTLIANP  720 (810)
T ss_dssp             HHHHHHHHHTTSHHHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHHHHHHHC-HHHHHHHHTSTTHHHHHHHHHTCS
T ss_pred             HHHHHHHHHhCChHHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHHcCCHHHHHHHHCCC
Confidence            9999999999999999988843789999999999999999999999999999965 466788888 89999999999999


Q ss_pred             CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          292 TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       292 ~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      ++.+|+.|+++|.|+..+..+   .+.+.|++++|...+..+.....+..+.|.++|+++.+..
T Consensus       721 d~~vq~~A~~aL~NL~~~s~e~~~~l~e~G~i~~L~~LL~~~d~~~~~i~e~Al~aL~~ll~~g  784 (810)
T 3now_A          721 SPAVQHRGIVIILNMINAGEEIAKKLFETDIMELLSGLGQLPDDTRAKAREVATQCLAAAERYR  784 (810)
T ss_dssp             SHHHHHHHHHHHHHHHTTCHHHHHHHHTSTHHHHHTTSCCCTTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHhCcccCcHHHHHHHHHHHHHHHhCC
Confidence            999999999999999886643   6889999999988775433346899999999999998653

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.8e-35  Score=287.39  Aligned_cols=336  Identities=16%  Similarity=0.184  Sum_probs=276.1

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc-Chh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR-NER  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~-~~~  101 (375)
                      ....++.||.+|++++++.|..|+++|.+++..+ ++++..+++.|+|+.||++|++++.++++.|+++|+||+.+ +++
T Consensus        46 ~~~~i~~LV~~L~s~~~~~q~~Aa~~L~~La~~~-~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~~~  124 (584)
T 3l6x_A           46 RQPELPEVIAMLGFRLDAVKSNAAAYLQHLCYRN-DKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRDQD  124 (584)
T ss_dssp             CCCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSCHH
T ss_pred             ccccHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCCHH
Confidence            4567999999999999999999999999999887 79999999999999999999999999999999999999985 689


Q ss_pred             hHHHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc------------------c
Q 017249          102 NKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH------------------S  162 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~------------------~  162 (375)
                      +|..+++.|+||+|+.+|.+ .+.++++.++++|+||+.+++++..|+. ++++.|++++.                  .
T Consensus       125 nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~aL~nLS~~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~  203 (584)
T 3l6x_A          125 NKIAIKNCDGVPALVRLLRKARDMDLTEVITGTLWNLSSHDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHI  203 (584)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHHHHHHHTTSGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CC
T ss_pred             HHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCchhhHHHHh-ccHHHHHHHHhccccccccccccccccccc
Confidence            99999999999999999997 5789999999999999998889988885 57999999872                  2


Q ss_pred             CCHHHHHHHHHHHHHhccCCC-Cchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCChhh---------
Q 017249          163 GSVQGRVDAVTALHYLSTCKE-NSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSSEEG---------  227 (375)
Q Consensus       163 ~~~~~~~~a~~~L~~L~~~~~-~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~~~---------  227 (375)
                      .+..++.+|+++|.||+..++ ++..+++. |+++.|+.++.+.    ..+....+.|+++|+||+.....         
T Consensus       204 ~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~  283 (584)
T 3l6x_A          204 EWESVLTNTAGCLRNVSSERSEARRKLRECDGLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQ  283 (584)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCHHHHHHHHHSTTHHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--
T ss_pred             ccHHHHHHHHHHHHHHhcCCHHHHHHHHHcCCcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhh
Confidence            257899999999999998764 58888874 6678999999863    23446789999999999976211         


Q ss_pred             -----------------hHHHhhccCcHHHHHHHhc-cCChHHHHHHHHHHHHhcccCcH---HHHHHHHHcCChHHHHH
Q 017249          228 -----------------RIAITNSDGGILTLVETVE-DGSLVSTQHAVGALLSLCQSCRD---KYRQLILKEGAIPGLLR  286 (375)
Q Consensus       228 -----------------~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a~~~L~~l~~~~~~---~~~~~l~~~g~v~~L~~  286 (375)
                                       ...+. +.++++.|+.+|. +.++.+++.|+++|.|||.+..+   ..+..+.+.++++.|+.
T Consensus       284 ~~~~~~~~~~~~~~~~Gve~L~-~~~~v~~Ll~LL~~s~~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~  362 (584)
T 3l6x_A          284 EAAPNVANNTGTSPARGYELLF-QPEVVRIYISLLKESKTPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIAD  362 (584)
T ss_dssp             ------------CCCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhcccccccccccCchhHHHHh-cccHHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHH
Confidence                             11111 2345677888996 45799999999999999987532   22334455899999999


Q ss_pred             HhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCCC-----hHHHHHHHHHHHHHHHHHHHHHhHHHH
Q 017249          287 LTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVDG-----ADKAAETAKRLLQDMVQRSMELSMTRI  360 (375)
Q Consensus       287 ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~g-----~~~~~~~a~~~l~~l~~~s~~~~~~~~  360 (375)
                      ++.++++.+++.|+++|++|+.+... ..+..|+++.|+..|......     .......|..+|.+++..+. .+...|
T Consensus       363 LL~s~~~~v~~~A~~aL~nLs~~~~~~~~I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~-~~~~~I  441 (584)
T 3l6x_A          363 LLTNEHERVVKAASGALRNLAVDARNKELIGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENL-EAAKKL  441 (584)
T ss_dssp             GGGCSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCH-HHHHHH
T ss_pred             HHcCCCHHHHHHHHHHHHHHhCChhHHHHHHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCH-HHHHHH
Confidence            99999999999999999999988744 567899999999988643211     36778889999999985543 333344


Q ss_pred             HH
Q 017249          361 QQ  362 (375)
Q Consensus       361 ~~  362 (375)
                      .+
T Consensus       442 ~~  443 (584)
T 3l6x_A          442 RE  443 (584)
T ss_dssp             HH
T ss_pred             HH
Confidence            33

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=1.9e-35  Score=284.52  Aligned_cols=323  Identities=20%  Similarity=0.235  Sum_probs=270.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .++.|+.+|++++++.|..|+++|.+++.++ +..+..+++.|+++.|+++|++++++++..|+++|+||+.++++++..
T Consensus         3 ~l~~lv~~L~s~~~~~q~~A~~~L~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~~~~k~~   81 (457)
T 1xm9_A            3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-hHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            5799999999999999999999999999877 677888999999999999999999999999999999999977999999


Q ss_pred             HHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc--------cC--------CHHHH
Q 017249          106 IATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH--------SG--------SVQGR  168 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~--------~~--------~~~~~  168 (375)
                      +++.|++|+|+++|. ++++++++.++++|+||+.+++++..+.. |+++.|+++|.        ++        +..++
T Consensus        82 i~~~G~i~~Lv~lL~~~~~~~~~~~a~~aL~nLa~~~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~  160 (457)
T 1xm9_A           82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHcCCHHHHHHHHhhCCCHHHHHHHHHHHHHHhcCHHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHH
Confidence            999999999999999 78999999999999999999888998888 99999999993        22        45677


Q ss_pred             HHHHHHHHHhccCCCCchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCCh------------------
Q 017249          169 VDAVTALHYLSTCKENSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSSE------------------  225 (375)
Q Consensus       169 ~~a~~~L~~L~~~~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~------------------  225 (375)
                      ..|+|+|+||+.+++++..+.+. |+++.|+.++.++    ..+..+.+.++.+|+||+...                  
T Consensus       161 ~~a~~aL~nLs~~~~~~~~i~~~~g~i~~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~  240 (457)
T 1xm9_A          161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHccCHHHHHHHHHcCCCHHHHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccc
Confidence            79999999999888888888887 9999999999863    123356788999999997421                  


Q ss_pred             ---------------------------------hhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcH--
Q 017249          226 ---------------------------------EGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRD--  269 (375)
Q Consensus       226 ---------------------------------~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~--  269 (375)
                                                       .....+. +.|+++.|+.+|.+ .++.+++.|+|+|.|++.+..+  
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~l~~L~~lL~~~~~~~~~e~a~~aL~nl~~~~~~~~  319 (457)
T 1xm9_A          241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLY-HSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMS  319 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGG-SHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHH
T ss_pred             cccccccchhhccchhhhhccccCCccccccCchHHHHHh-CcchHHHHHHHHhhcCCHHHHHHHHHHHHHhccCcCcch
Confidence                                             1222333 56788999999975 4689999999999999987532  


Q ss_pred             -HHHHHHH-HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCC---ChHHHHHHHHH
Q 017249          270 -KYRQLIL-KEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKR  343 (375)
Q Consensus       270 -~~~~~l~-~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~---g~~~~~~~a~~  343 (375)
                       ...+.++ +.|++|.|++++.++++++++.|+++|++++.+.+. ..+..|++++|+..|.....   ..++....+..
T Consensus       320 ~~~~~~~v~~~~~l~~Lv~LL~~~~~~v~~~A~~aL~nls~~~~~~~~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~  399 (457)
T 1xm9_A          320 SGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACY  399 (457)
T ss_dssp             HHHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCchHHHHHHhCCCHhHHHHHHHHHHHHhcCHHHHHHHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHH
Confidence             2213344 589999999999999999999999999999987744 56778999999998863221   13456677777


Q ss_pred             HHHHHHHH
Q 017249          344 LLQDMVQR  351 (375)
Q Consensus       344 ~l~~l~~~  351 (375)
                      +|.++...
T Consensus       400 ~l~ni~~~  407 (457)
T 1xm9_A          400 TVRNLMAS  407 (457)
T ss_dssp             HHHHHHTT
T ss_pred             HHHHHHhc
Confidence            88887643

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=1.4e-35  Score=274.25  Aligned_cols=279  Identities=20%  Similarity=0.225  Sum_probs=241.3

Q ss_pred             HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhccChhhHHHHH
Q 017249           39 LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNLAVRNERNKVKIA  107 (375)
Q Consensus        39 ~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~  107 (375)
                      ...+..|+++|.+++.+.  ++|+.+++.|++++|+.+|.+           .+++++..|+++|.||+.+++.++..+.
T Consensus        46 ~~~~~~A~~aL~nls~d~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~  123 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLC  123 (354)
T ss_dssp             GGTHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCH--HHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            355668999999999886  899999999999999999952           2367999999999999998888898887


Q ss_pred             Hc-CChHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CC
Q 017249          108 TA-GAIPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLST-CK  182 (375)
Q Consensus       108 ~~-g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~-~~  182 (375)
                      .. |++|+|+++|+++++++++.|+++|+||+..  ++++..+.+.|+++.|+++| ++++..+++.|+.+|+||+. .+
T Consensus       124 ~~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          124 SMKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCH
T ss_pred             HcCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCCCHHHHHHHHHHHHHHHccCh
Confidence            65 5599999999999999999999999999985  34788889999999999975 66788999999999999998 55


Q ss_pred             CCchhhh-hcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          183 ENSSPIL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       183 ~~~~~i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      +++..++ ..|+++.|++++.++++..  .+++.++++|+||+.    +++++..+. +.|+++.|+.+|.+++..+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH-TTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHH-HcCCHHHHHHHHcCCChHHHHH
Confidence            7888887 6899999999998764321  578899999999995    788887777 7899999999999999999999


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHH
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLE  321 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~  321 (375)
                      |+++|+|++..+ ++.+..+++.|+++.|+.++.++++.+++.|+++|.+|+.+.+.+....++++
T Consensus       283 A~~aL~nLa~~~-~~~~~~i~~~G~i~~Lv~LL~s~~~~i~~~A~~aL~nL~~~~~~~~~~~~~~~  347 (354)
T 3nmw_A          283 ACGTLWNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPAKYKDANIMS  347 (354)
T ss_dssp             HHHHHHHHTSSC-HHHHHHHHHTTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCCGGGC------
T ss_pred             HHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHHHHhhhcccC
Confidence            999999999765 57899999999999999999999999999999999999998876555544444

>3tpo_A Importin subunit alpha-2; nuclear import, protein transport; 2.10A {Mus musculus} PDB: 1qgk_B 1qgr_B

Probab=100.00  E-value=1.3e-33  Score=276.92  Aligned_cols=332  Identities=17%  Similarity=0.216  Sum_probs=287.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ..++.++..++|++++.+..|+..++++.........+.+++.|++|.|+++|.. +++.++..|+|+|.|++.++++.+
T Consensus        76 ~~l~~lv~~l~s~d~~~q~~a~~~~rklLs~~~~~~i~~ii~~G~ip~Lv~lL~~~~~~~~q~~Aa~aL~nia~~~~~~~  155 (529)
T 3tpo_A           76 WSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQT  155 (529)
T ss_dssp             CCHHHHHHHHTSSCHHHHHHHHHHHHHHHTSSSCCCHHHHHHTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCchHHHHHHCCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCHHHH
Confidence            3589999999999999999999999998765524567889999999999999965 568999999999999999899999


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCC-----HHHHHHHHHHHHH
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGS-----VQGRVDAVTALHY  177 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~  177 (375)
                      ..+++.|++|.|+.+|.++++++++.|+++|+||+.+. ..+..+...|++++|+.+|..++     ...+..++++|.+
T Consensus       156 ~~vv~~Gaip~Lv~LL~s~~~~v~e~A~~aL~nLa~~~~~~r~~i~~~g~i~~Ll~lL~~~~~~~~~~~~~~~a~~~L~n  235 (529)
T 3tpo_A          156 KAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGAGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSN  235 (529)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHTTCSSCGGGSCHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhccCHHHHHHHHHcCCcHHHHHHHhccchhHhHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999875 46888889999999999998764     3568899999999


Q ss_pred             hccCCCCchhh-hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249          178 LSTCKENSSPI-LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA  256 (375)
Q Consensus       178 L~~~~~~~~~i-~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a  256 (375)
                      ++.+......+ ...+++|.|++++.++  +..++..++++|.+++..+..+..++...|+++.|+.+|.+++..++..|
T Consensus       236 l~~~~~~~~~~~~~~~~lp~L~~LL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~v~~~a  313 (529)
T 3tpo_A          236 LCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTPA  313 (529)
T ss_dssp             HHCCCTTCCCHHHHHHHHHHHHHHTTSS--CHHHHHHHHHHHHHHHSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHHH
T ss_pred             HHhcccchhhHHHHhhHHHHHHHHhcCC--cHHHHHHHHHHHHHhhhhhhhhHHHHHhccchHHHHHHhcCCChhHHHHH
Confidence            99876544443 3468999999999876  45788899999999998776666655578999999999999999999999


Q ss_pred             HHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCC
Q 017249          257 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDG  333 (375)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g  333 (375)
                      +.+|+|++.++ +.....+++.|+++.|+.++.++++.+++.|+++|.+++.+.+.   .++..|+++.|+..|.   ++
T Consensus       314 ~~aL~nl~~~~-~~~~~~i~~~g~l~~L~~LL~~~~~~i~~~a~~aL~nl~~~~~~~~~~v~~~g~i~~Lv~lL~---~~  389 (529)
T 3tpo_A          314 LRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---KA  389 (529)
T ss_dssp             HHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHHH---SS
T ss_pred             HHHHHHHHccc-hHHHHHHhhcccHHHHHHHHcCCCHHHHHHHHHHHHHHhcccHHHHHHHHhcCcHHHHHHHhc---CC
Confidence            99999999887 57788889999999999999999999999999999999987743   5778999999998886   56


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017249          334 ADKAAETAKRLLQDMVQRSMELSMTRIQQ  362 (375)
Q Consensus       334 ~~~~~~~a~~~l~~l~~~s~~~~~~~~~~  362 (375)
                      +.+.+..|.++|.++...+-..+...+.+
T Consensus       390 ~~~v~~~A~~aL~nl~~~~~~~~~~~l~~  418 (529)
T 3tpo_A          390 DFKTQKAAAWAITNYTSGGTVEQIVYLVH  418 (529)
T ss_dssp             CHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcCCCHHHHHHHHH
Confidence            68999999999999986544444444443

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=6.6e-33  Score=272.05  Aligned_cols=328  Identities=16%  Similarity=0.184  Sum_probs=290.4

Q ss_pred             HHHHhhHhHHHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhh
Q 017249           18 AWNQRKQALIEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLA   96 (375)
Q Consensus        18 ~~~~~~~~~l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~   96 (375)
                      ...+...+.++.|+.+|.+++ +.++..|+++|.+++.++ ++++..+++.|+++.|+.+|.+++++++..|+++|++|+
T Consensus       110 ~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~  188 (528)
T 4b8j_A          110 IEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGT-SENTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVA  188 (528)
T ss_dssp             HHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHh
Confidence            445667789999999999876 999999999999999987 789999999999999999999999999999999999999


Q ss_pred             ccChhhHHHHHHcCChHHHHHhh-cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           97 VRNERNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        97 ~~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      .+++.++..+...|++++|+.+| .+.++.++..++++|.+|+...+........++++.|+.+|.+++..++..++++|
T Consensus       189 ~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL  268 (528)
T 4b8j_A          189 GDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFCRGKPQPSFEQTRPALPALARLIHSNDEEVLTDACWAL  268 (528)
T ss_dssp             HTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHHCSSSCCCHHHHTTHHHHHHHHTTCCCHHHHHHHHHHH
T ss_pred             CCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCCCCCcHHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            98899999999999999999999 56789999999999999998866555556689999999999999999999999999


Q ss_pred             HHhccCCCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccC-ChHH
Q 017249          176 HYLSTCKEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG-SLVS  252 (375)
Q Consensus       176 ~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~-~~~~  252 (375)
                      .+|+..++. ...+.+.|+++.|+.++.++  +..++..|+++|+||+.. +.....++ +.|+++.|+.+|.++ ++.+
T Consensus       269 ~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~--~~~v~~~a~~~L~nl~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~~v  345 (528)
T 4b8j_A          269 SYLSDGTNDKIQAVIEAGVCPRLVELLLHP--SPSVLIPALRTVGNIVTGDDAQTQCII-DHQALPCLLSLLTQNLKKSI  345 (528)
T ss_dssp             HHHTSSCHHHHHHHHHTTCHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHHHSCCCHHH
T ss_pred             HHHHcCCHHHHHHHHHcCHHHHHHHHHcCC--ChhHHHHHHHHHHHHHcCCHHHHHHHH-HhhhHHHHHHHHcCCCcHHH
Confidence            999977544 45677889999999999987  457889999999999985 55555566 689999999999998 8999


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-hh---hhhhhhhHHHHHHHHh
Q 017249          253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-QE---KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~~---~~~~~g~~~~l~~~l~  328 (375)
                      +..|+++|.|++.+. ++....+++.|+++.|+.++.++++.+++.|+++|.+++... +.   .+++.|+++.|+..|.
T Consensus       346 ~~~A~~~L~nl~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~aL~nl~~~~~~~~~~~l~~~~~i~~L~~lL~  424 (528)
T 4b8j_A          346 KKEACWTISNITAGN-KDQIQAVINAGIIGPLVNLLQTAEFDIKKEAAWAISNATSGGSHDQIKYLVSEGCIKPLCDLLI  424 (528)
T ss_dssp             HHHHHHHHHHHHTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHHGGG
T ss_pred             HHHHHHHHHHHHCCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHHc
Confidence            999999999999876 567788889999999999999999999999999999998763 22   4667899999998885


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHH
Q 017249          329 ARVDGADKAAETAKRLLQDMVQRSM  353 (375)
Q Consensus       329 ~~~~g~~~~~~~a~~~l~~l~~~s~  353 (375)
                         ++.++.+..|..+|.+|.+...
T Consensus       425 ---~~d~~v~~~al~~L~~l~~~~~  446 (528)
T 4b8j_A          425 ---CPDIRIVTVCLEGLENILKVGE  446 (528)
T ss_dssp             ---CSCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHHHH
Confidence               4558999999999999986543

>1xm9_A Plakophilin 1; armadillo repeat, cell adhesion; 2.80A {Homo sapiens} SCOP: a.118.1.24

Probab=100.00  E-value=6.6e-34  Score=273.81  Aligned_cols=327  Identities=20%  Similarity=0.200  Sum_probs=273.6

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHH
Q 017249           13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLA   91 (375)
Q Consensus        13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~   91 (375)
                      +++..+..+...|++|.|+.+|++++++.+..|+++|.+++.++ ++++..+++.|+++.|+++|+ ++++++++.++++
T Consensus        32 ~~~~~~~~i~~~g~i~~Lv~lL~s~~~~~~~~A~~aL~nLa~~~-~~~k~~i~~~G~i~~Lv~lL~~~~~~~~~~~a~~a  110 (457)
T 1xm9_A           32 QDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGL  110 (457)
T ss_dssp             SCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTCHHHHHHHHTTCCCHHHHHHHHHH
T ss_pred             CChHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHcCCHHHHHHHHhhCCCHHHHHHHHHH
Confidence            44556678899999999999999999999999999999999987 799999999999999999999 8899999999999


Q ss_pred             HHHhhccChhhHHHHHHcCChHHHHHhhc--------CC--------ChHHHHHHHHHHHHhhccCCChhHHHhc-CChH
Q 017249           92 LLNLAVRNERNKVKIATAGAIPPLVELLK--------FQ--------NGTLRELAAAAILTLSAAAPNKPAIAAS-GAAP  154 (375)
Q Consensus        92 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~--------~~--------~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~l~  154 (375)
                      |.||+.+ +++|..+++ |++|+|+++|.        ++        ++.+...|+++|+||+.+++++..+.+. |+++
T Consensus       111 L~nLa~~-~~~~~~i~~-g~i~~Lv~ll~~~~s~~~~~~~~~~~e~~~~~v~~~a~~aL~nLs~~~~~~~~i~~~~g~i~  188 (457)
T 1xm9_A          111 LWNLSST-DELKEELIA-DALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNYSGLID  188 (457)
T ss_dssp             HHHHHTS-SSTHHHHHH-HHHHHHHHHTTHHHHTCC---------CCCHHHHHHHHHHHHHHTTSHHHHHHHTTSTTHHH
T ss_pred             HHHHhcC-HHhHHHHHh-ccHHHHHHHHhccccccccCccchhcccccHHHHHHHHHHHHHHccCHHHHHHHHHcCCCHH
Confidence            9999996 789999999 99999999993        32        4566679999999999886678888886 9999


Q ss_pred             HHHHHhcc------CCHHHHHHHHHHHHHhccC-----------------------------------------------
Q 017249          155 LLVQILHS------GSVQGRVDAVTALHYLSTC-----------------------------------------------  181 (375)
Q Consensus       155 ~L~~lL~~------~~~~~~~~a~~~L~~L~~~-----------------------------------------------  181 (375)
                      .|+.+|++      .+..++..++++|.+|+..                                               
T Consensus       189 ~Lv~lL~~~~~~~~~~~~~~e~a~~~L~nLs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  268 (457)
T 1xm9_A          189 SLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPE  268 (457)
T ss_dssp             HHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC----------------------------CCC
T ss_pred             HHHHHHHhhccccCCchHHHHHHHHHHHhcccchhccCcchhhhcccccccccccccccchhhccchhhhhccccCCccc
Confidence            99999986      4567888999999998731                                               


Q ss_pred             ----CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-----hhHHHhhccCcHHHHHHHhccCChHH
Q 017249          182 ----KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-----GRIAITNSDGGILTLVETVEDGSLVS  252 (375)
Q Consensus       182 ----~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-----~~~~~~~~~g~v~~Lv~lL~~~~~~~  252 (375)
                          +.....+.+.|+++.|+.+|.++. .+.+++.|+++|+||+....     ..+.++.+.|+++.|+++|.+++..+
T Consensus       269 ~~~~~~~~~~l~~~~~l~~L~~lL~~~~-~~~~~e~a~~aL~nl~~~~~~~~~~~~~~~v~~~~~l~~Lv~LL~~~~~~v  347 (457)
T 1xm9_A          269 EETNPKGSGWLYHSDAIRTYLNLMGKSK-KDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDV  347 (457)
T ss_dssp             CCSSCCGGGGGGSHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHTTSCCHHHHHHHTTCSCHHH
T ss_pred             cccCchHHHHHhCcchHHHHHHHHhhcC-CHHHHHHHHHHHHHhccCcCcchHHHHHHHHHHcCCchHHHHHHhCCCHhH
Confidence                112344566788999999998864 45789999999999997532     21334446899999999999999999


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCC------HHHHHHHHHHHHHhhcCChh---hhhhhhhHHHH
Q 017249          253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGT------FEAQERARTLLDLLRDTPQE---KRLSSSVLEKI  323 (375)
Q Consensus       253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~------~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l  323 (375)
                      +..|+|+|.|++.+.  +.+. ++..|++++|++++..++      +++...+.++|.++....++   .+.+.|++++|
T Consensus       348 ~~~A~~aL~nls~~~--~~~~-~i~~~~i~~Lv~lL~~~~~~~~~~~~v~~~~l~~l~ni~~~~~~~~~~i~~~g~l~~L  424 (457)
T 1xm9_A          348 VRSGASLLSNMSRHP--LLHR-VMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSSSMLNNI  424 (457)
T ss_dssp             HHHHHHHHHHHHTSG--GGHH-HHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHHHHHTTCTHHHHHHCCHHHHHHH
T ss_pred             HHHHHHHHHHHhcCH--HHHH-HHHHhhhHHHHHhccCCCCCCCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHH
Confidence            999999999998864  4444 455689999999998764      36888999999999765533   67789999999


Q ss_pred             HHHHhhcCCC-hHHHHHHHHHHHHHHH
Q 017249          324 VYDIAARVDG-ADKAAETAKRLLQDMV  349 (375)
Q Consensus       324 ~~~l~~~~~g-~~~~~~~a~~~l~~l~  349 (375)
                      +..+.   .+ +++++++|..+|.++.
T Consensus       425 ~~L~~---~~~~~~i~~~A~~~L~~~~  448 (457)
T 1xm9_A          425 INLCR---SSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHH---CTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHc---CCCcHHHHHHHHHHHHHHH
Confidence            98775   34 6899999999999875

>3l6x_A Catenin delta-1; catenin, armadillo, ARM, JMD, CE adhesion, complex, cell-CELL adhesion, ARVCF, delta-catenin DP120, JAC-1, cell membrane, membrane; 2.40A {Homo sapiens} PDB: 3l6y_A

Probab=100.00  E-value=1.9e-33  Score=273.24  Aligned_cols=340  Identities=17%  Similarity=0.181  Sum_probs=277.9

Q ss_pred             hhhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhh-CChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHH
Q 017249           13 DQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKK-SSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLL   90 (375)
Q Consensus        13 ~~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~-~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~   90 (375)
                      .+.+++..+...|+||.||.+|++++++++..|+++|.+++.+ + ++++..+++.|+|+.|+.+|++ .+.++++.++.
T Consensus        78 ~~~~~k~~V~~~G~Ip~LV~LL~s~~~~vq~~Aa~AL~nLa~~~~-~~nk~~I~~~GaIp~LV~LL~s~~~~~~~e~aa~  156 (584)
T 3l6x_A           78 RNDKVKTDVRKLKGIPVLVGLLDHPKKEVHLGACGALKNISFGRD-QDNKIAIKNCDGVPALVRLLRKARDMDLTEVITG  156 (584)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHGGGCSSHHHHHHHHHHHHHHTSSSC-HHHHHHHHHTTHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred             CChHHHHHHHHcCCcHHHHHHHCCCCHHHHHHHHHHHHHHHccCC-HHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHH
Confidence            4667888899999999999999999999999999999999986 4 6899999999999999999987 67899999999


Q ss_pred             HHHHhhccChhhHHHHHHcCChHHHHHhhc------------------CCChHHHHHHHHHHHHhhccCC-ChhHHHh-c
Q 017249           91 ALLNLAVRNERNKVKIATAGAIPPLVELLK------------------FQNGTLRELAAAAILTLSAAAP-NKPAIAA-S  150 (375)
Q Consensus        91 ~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~------------------~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~-~  150 (375)
                      +|.+|+. +++++..+++ +++|+|++++.                  ..++.+++.|+++|.||+.+.+ ++..+.. .
T Consensus       157 aL~nLS~-~~~~k~~I~~-~alp~Lv~LL~~p~sg~~~~~~~~~k~~~~~d~~V~~nAa~~L~NLs~~~~~~R~~i~~~~  234 (584)
T 3l6x_A          157 TLWNLSS-HDSIKMEIVD-HALHALTDEVIIPHSGWEREPNEDCKPRHIEWESVLTNTAGCLRNVSSERSEARRKLRECD  234 (584)
T ss_dssp             HHHHHTT-SGGGHHHHHH-HTHHHHHHHTHHHHHCCC----------CCCCHHHHHHHHHHHHHHTSSCHHHHHHHHHST
T ss_pred             HHHHHhC-CchhhHHHHh-ccHHHHHHHHhcccccccccccccccccccccHHHHHHHHHHHHHHhcCCHHHHHHHHHcC
Confidence            9999998 6889999996 57999999871                  2257999999999999998875 4787776 4


Q ss_pred             CChHHHHHHhcc------CCHHHHHHHHHHHHHhccCC--------------------------CCchhhhhcCCcHHHH
Q 017249          151 GAAPLLVQILHS------GSVQGRVDAVTALHYLSTCK--------------------------ENSSPILDATAVPPLI  198 (375)
Q Consensus       151 ~~l~~L~~lL~~------~~~~~~~~a~~~L~~L~~~~--------------------------~~~~~i~~~g~i~~Lv  198 (375)
                      |+++.|+.+|++      .+...++.|+++|+||+...                          .....+...++++.|+
T Consensus       235 Gli~~LV~~L~~~~~~~~~~~~~~enav~aL~NLs~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~Gve~L~~~~~v~~Ll  314 (584)
T 3l6x_A          235 GLVDALIFIVQAEIGQKDSDSKLVENCVCLLRNLSYQVHREIPQAERYQEAAPNVANNTGTSPARGYELLFQPEVVRIYI  314 (584)
T ss_dssp             THHHHHHHHHHHHHHTTCCSCHHHHHHHHHHHHHHTTHHHHSTTCCC--------------CCCCGGGGGGSHHHHHHHH
T ss_pred             CcHHHHHHHHHHhhcccCccHHHHHHHHHHHHHhhccccccccchhhhhhhcccccccccccCchhHHHHhcccHHHHHH
Confidence            667899999975      46688999999999999651                          1112233445677889


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhCCh----hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHH
Q 017249          199 NLLKDCKKYSKFAEKATALLEILSSSE----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQL  274 (375)
Q Consensus       199 ~ll~~~~~~~~~~~~a~~~L~~l~~~~----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  274 (375)
                      .++..+. ...+++.|+++|+|||.+.    ...+.++.+.++++.|+.+|.++++.++..|+++|.||+.+..  .+..
T Consensus       315 ~LL~~s~-~~~v~E~Aa~AL~nL~ag~~~~~~~~~~~v~~~~glp~Lv~LL~s~~~~v~~~A~~aL~nLs~~~~--~~~~  391 (584)
T 3l6x_A          315 SLLKESK-TPAILEASAGAIQNLCAGRWTYGRYIRSALRQEKALSAIADLLTNEHERVVKAASGALRNLAVDAR--NKEL  391 (584)
T ss_dssp             HHHHHCC-CHHHHHHHHHHHHHHHSSCSHHHHHHHHHHTSHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCS--CHHH
T ss_pred             HHHccCC-CHHHHHHHHHHHHHHHcCCccccHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhCChh--HHHH
Confidence            9997654 4578999999999998653    2223345467999999999999999999999999999998763  3444


Q ss_pred             HHHcCChHHHHHHhhhC--------CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          275 ILKEGAIPGLLRLTVEG--------TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       275 l~~~g~v~~L~~ll~~~--------~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                       +..|+++.|+.++.++        +..+...|+++|.+|....+.   .+.+.|+++.|+..+.++. ..+++++.|..
T Consensus       392 -I~~g~ip~LV~LL~~~~~~~~~~~s~~v~~~a~~tL~NL~a~~~~~~~~I~~~g~I~~Lv~LL~s~~-~~~~v~k~Aa~  469 (584)
T 3l6x_A          392 -IGKHAIPNLVKNLPGGQQNSSWNFSEDTVISILNTINEVIAENLEAAKKLRETQGIEKLVLINKSGN-RSEKEVRAAAL  469 (584)
T ss_dssp             -HHHHHHHHHHHTSSSSSCSGGGTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHTCSS-SCHHHHHHHHH
T ss_pred             -HHhCCHHHHHHHhcCCcccccccchHHHHHHHHHHHHHHhcCCHHHHHHHHHCCChHHHHHHHhCCC-CChHHHHHHHH
Confidence             4789999999999876        467899999999999765532   6788999999998886322 25899999999


Q ss_pred             HHHHHHHHHHHHhHHHHHHH
Q 017249          344 LLQDMVQRSMELSMTRIQQR  363 (375)
Q Consensus       344 ~l~~l~~~s~~~~~~~~~~~  363 (375)
                      +|.+|..   +++..+++++
T Consensus       470 vL~nl~~---~~elr~~~kk  486 (584)
T 3l6x_A          470 VLQTIWG---YKELRKPLEK  486 (584)
T ss_dssp             HHHHHHT---SHHHHHHHHT
T ss_pred             HHHHHHc---CHHHHHHHHH
Confidence            9999974   4455555554

>4b8j_A Importin subunit alpha-1A; transport protein, nuclear localization signal; 2.00A {Oryza sativa japonica group} PDB: 4b8o_A 2yns_A 4b8p_A

Probab=100.00  E-value=1.3e-32  Score=270.04  Aligned_cols=323  Identities=20%  Similarity=0.200  Sum_probs=285.1

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC-HHHHHHHHHHHHHhhccChh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN-LDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~-~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ....++.|+..|.+++++.+..|++.|.+++..........+++.|+++.|+++|.+++ +.++..|+++|.+++.++++
T Consensus        72 ~~~~l~~lv~~L~s~~~~~~~~A~~~L~~l~s~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~v~~~A~~~L~~l~~~~~~  151 (528)
T 4b8j_A           72 KLESLPAMIGGVYSDDNNLQLEATTQFRKLLSIERSPPIEEVIQSGVVPRFVQFLTREDFPQLQFEAAWALTNIASGTSE  151 (528)
T ss_dssp             ---CHHHHHHHHTSSCHHHHHHHHHHHHHHHTCSSSCCHHHHHHTTCHHHHHHHHTCTTCHHHHHHHHHHHHHHHTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            35569999999999999999999999999987762367888999999999999999887 99999999999999998899


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhc
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLS  179 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~  179 (375)
                      ++..+++.|+++.|+.+|.++++.++..|+++|.+|+.+.+ .+..+...|+++.|+.+| .+.+..++..++++|.+|+
T Consensus       152 ~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~v~~~a~~~L~~L~  231 (528)
T 4b8j_A          152 NTKVVIDHGAVPIFVKLLGSSSDDVREQAVWALGNVAGDSPKCRDLVLANGALLPLLAQLNEHTKLSMLRNATWTLSNFC  231 (528)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHTTCHHHHHHTCCTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCcHHHHHHHhcCCCHHHHHHHHHHHHHHhCCChhhHHHHHHCCcHHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999998754 577788889999999999 6678999999999999999


Q ss_pred             cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          180 TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       180 ~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      ...+........|+++.|+.++.+.  +..++..++++|.+++..+..+...+.+.|+++.|+.+|.++++.++..|+++
T Consensus       232 ~~~~~~~~~~~~~~l~~L~~lL~~~--~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~v~~~a~~~  309 (528)
T 4b8j_A          232 RGKPQPSFEQTRPALPALARLIHSN--DEEVLTDACWALSYLSDGTNDKIQAVIEAGVCPRLVELLLHPSPSVLIPALRT  309 (528)
T ss_dssp             CSSSCCCHHHHTTHHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSCHHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHH
T ss_pred             cCCCCCcHHHHHHHHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHHHcCHHHHHHHHHcCCChhHHHHHHHH
Confidence            8765555556689999999999876  45788999999999998766665444478999999999999999999999999


Q ss_pred             HHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-CHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249          260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD  335 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~  335 (375)
                      |++++.+. +.....+++.|+++.|+.++.++ ++.+++.|+++|.+++...+.   .++..|+++.|+..|.   ++++
T Consensus       310 L~nl~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~~v~~~A~~~L~nl~~~~~~~~~~~~~~~~i~~L~~lL~---~~~~  385 (528)
T 4b8j_A          310 VGNIVTGD-DAQTQCIIDHQALPCLLSLLTQNLKKSIKKEACWTISNITAGNKDQIQAVINAGIIGPLVNLLQ---TAEF  385 (528)
T ss_dssp             HHHHTTSC-HHHHHHHHTTTHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTCHHHHHHHHH---HSCH
T ss_pred             HHHHHcCC-HHHHHHHHHhhhHHHHHHHHcCCCcHHHHHHHHHHHHHHHCCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence            99999977 56778888999999999999988 999999999999999986643   5667899999999886   3458


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          336 KAAETAKRLLQDMVQR  351 (375)
Q Consensus       336 ~~~~~a~~~l~~l~~~  351 (375)
                      ..+..|..+|.++...
T Consensus       386 ~v~~~a~~aL~nl~~~  401 (528)
T 4b8j_A          386 DIKKEAAWAISNATSG  401 (528)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999999866

>3nmz_A APC variant protein; protein-protein complex, armadillo repeats, cell adhesion-CE complex; 3.01A {Homo sapiens}

Probab=100.00  E-value=3.2e-34  Score=272.86  Aligned_cols=265  Identities=21%  Similarity=0.234  Sum_probs=235.1

Q ss_pred             HHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHhhccChhhHHHHHHc-CC
Q 017249           44 EAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNLAVRNERNKVKIATA-GA  111 (375)
Q Consensus        44 ~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~-g~  111 (375)
                      .|+++|.+++.+.  ++|+.+++.|++++|+.+|..           .++.++..|+++|.||+.+++.++..+... |+
T Consensus       167 qAv~aL~nls~~~--e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~l~~~Aa~aL~nLa~~~~~~k~~i~~~~Ga  244 (458)
T 3nmz_A          167 PAVCVLMKLSFDE--EHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCSMKGC  244 (458)
T ss_dssp             HHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHCHHH
T ss_pred             HHHHHHHHhcCCH--HHHHHHHHCCCHHHHHHHHhhhhcccccccCCCCHHHHHHHHHHHHHHhCCCcccHHHHHHcCCc
Confidence            8999999997665  999999999999999999942           246789999999999999887788888764 55


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhcc--CCChhHHHhcCChHHHHHHh-ccCCHHHHHHHHHHHHHhcc-CCCCchh
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAA--APNKPAIAASGAAPLLVQIL-HSGSVQGRVDAVTALHYLST-CKENSSP  187 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~--~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~-~~~~~~~  187 (375)
                      +|+|+.+|.++++++++.|+++|+||+..  ++++..+.+.|+++.|+++| .+++..++..++.+|+||+. .++++..
T Consensus       245 Ip~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~I~~~GaI~~LV~lLl~s~~~~v~~~A~~aL~nLs~~~~~nk~~  324 (458)
T 3nmz_A          245 MRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVKKESTLKSVLSALWNLSAHCTENKAD  324 (458)
T ss_dssp             HHHHHHGGGCSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHTTHHHHHHHHHTTCCSHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCHHHHHHHHhcCCCHHHHHHHHHHHHHHccCCHHHHHH
Confidence            99999999999999999999999999985  34788888999999999975 56788999999999999998 6678888


Q ss_pred             hh-hcCCcHHHHHHhhhcccch--HHHHHHHHHHHHhhC----ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249          188 IL-DATAVPPLINLLKDCKKYS--KFAEKATALLEILSS----SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  260 (375)
Q Consensus       188 i~-~~g~i~~Lv~ll~~~~~~~--~~~~~a~~~L~~l~~----~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  260 (375)
                      ++ ..|+++.|+.++.+.++..  .+++.++++|+||+.    +++++..+. +.|+++.|+.+|.+++..+++.|+++|
T Consensus       325 I~~~~Gal~~Lv~LL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~~~~~~~i~-~~G~i~~Lv~LL~~~~~~v~~~A~~aL  403 (458)
T 3nmz_A          325 ICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATNEDHRQILR-ENNCLQTLLQHLKSHSLTIVSNACGTL  403 (458)
T ss_dssp             HHHSTTHHHHHHHHTTCCCSSSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHSSCSCHHHHHHHHHHH
T ss_pred             HHHhcCcHHHHHHHhcCCCCcchHHHHHHHHHHHHHHHhcccCCHHHHHHHH-HcccHHHHHHHHcCCChHHHHHHHHHH
Confidence            87 7899999999998764321  478889999999995    778887777 689999999999999999999999999


Q ss_pred             HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          261 LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       261 ~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      +|++..+ ++.+..+++.|+++.|+.++.++++.+++.|+++|.+|..+.+.
T Consensus       404 ~nLa~~~-~~~~~~i~~~G~I~~Lv~LL~s~~~~v~~~Aa~AL~nL~~~~p~  454 (458)
T 3nmz_A          404 WNLSARN-PKDQEALWDMGAVSMLKNLIHSKHKMIAMGSAAALRNLMANRPA  454 (458)
T ss_dssp             HHHHSSC-HHHHHHHHHHTHHHHHHTTTTCSSHHHHHHHHHHHHHHHTCCSC
T ss_pred             HHHHcCC-HHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCCHh
Confidence            9999765 57899999999999999999999999999999999999987754

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=9.4e-32  Score=263.97  Aligned_cols=327  Identities=15%  Similarity=0.170  Sum_probs=288.4

Q ss_pred             HHHhhHhHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           19 WNQRKQALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+...+.++.|+.+|.++ ++.++..|+++|.+++.+. ++.+..+++.|+++.|+.+|.+++++++..|+++|.+++.
T Consensus       124 ~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~-~~~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~  202 (530)
T 1wa5_B          124 DVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAG  202 (530)
T ss_dssp             HHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCC-HHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhC
Confidence            3455678999999999987 8999999999999999988 7888889999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      +++.++..+...|+++.|+.++.+.++.++..++++|.+|+.+. +........++++.|+.+|.+++..++..++++|.
T Consensus       203 ~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~~~~~~~~~~~~~~~l~~L~~lL~~~d~~v~~~a~~~L~  282 (530)
T 1wa5_B          203 DSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAIS  282 (530)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHH
T ss_pred             CCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhCCCCCCCcHHHHHhHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            88899999999999999999999999999999999999999876 55555566899999999999999999999999999


Q ss_pred             HhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHH
Q 017249          177 YLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQ  254 (375)
Q Consensus       177 ~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~  254 (375)
                      +|+... +....+++.|+++.|+.++.+.  +..++..++++|++++.. +.....++ +.|+++.|+.+|.++++.++.
T Consensus       283 ~L~~~~~~~~~~~~~~~~v~~Lv~lL~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~lL~~~~~~vr~  359 (530)
T 1wa5_B          283 YLSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVI-NAGVLPALRLLLSSPKENIKK  359 (530)
T ss_dssp             HHHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHHHTTCSCHHHHH
T ss_pred             HHhCCCHHHHHHHHhcCcHHHHHHHHCCC--ChhhHHHHHHHHHHHHcCCHHHHHHHH-HcchHHHHHHHHcCCCHHHHH
Confidence            999764 4567777889999999999875  457889999999999975 44455555 689999999999999999999


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC-h--h---hhhhhhhHHHHHHHHh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP-Q--E---KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~-~--~---~~~~~g~~~~l~~~l~  328 (375)
                      .|+++|.+++.+. ++....+++.|+++.|+.++.++++.+++.|+++|.+++... +  .   .+++.|+++.|+..|.
T Consensus       360 ~A~~aL~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~l~~~~~l~~L~~ll~  438 (530)
T 1wa5_B          360 EACWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE  438 (530)
T ss_dssp             HHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT
T ss_pred             HHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHCCCHHHHHHHHh
Confidence            9999999999876 466777889999999999999999999999999999997642 2  2   5677899999998775


Q ss_pred             hcCCChHHHHHHHHHHHHHHHHHHH
Q 017249          329 ARVDGADKAAETAKRLLQDMVQRSM  353 (375)
Q Consensus       329 ~~~~g~~~~~~~a~~~l~~l~~~s~  353 (375)
                         ++.+..+..|..+|.+|.....
T Consensus       439 ---~~~~~v~~~al~aL~~l~~~~~  460 (530)
T 1wa5_B          439 ---IADNRIIEVTLDALENILKMGE  460 (530)
T ss_dssp             ---TCCHHHHHHHHHHHHHHHHHHH
T ss_pred             ---CCCHHHHHHHHHHHHHHHHhhh
Confidence               4458999999999999986544

>3now_A UNC-45 protein, SD10334P; armadillo repeat, HSP90, myosin, tetra-tricopeptide repeat, binding protein required for myosin function; 2.99A {Drosophila melanogaster}

Probab=100.00  E-value=3.5e-33  Score=279.97  Aligned_cols=319  Identities=18%  Similarity=0.184  Sum_probs=272.4

Q ss_pred             hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-
Q 017249           25 ALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFA-AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE-  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~-  100 (375)
                      ..++.|+++|.++  +++++..|++.|..++.+.  ..+..++ +.|+++.|+++|++++..++..++++|.||+.+.+ 
T Consensus       377 ~Lv~~l~~lL~~~~~d~~v~~~AveaLayLS~~~--~vk~~lv~d~g~Ip~LV~LL~s~d~~i~~~al~~L~NLt~~~d~  454 (810)
T 3now_A          377 KLAEACRRFLIKPGKDKDIRRWAADGLAYLTLDA--ECKEKLIEDKASIHALMDLARGGNQSCLYGVVTTFVNLCNAYEK  454 (810)
T ss_dssp             HHHHHHHHHHHCSSCCSSHHHHHHHHHHHHTTSH--HHHHHHHHCHHHHHHHHHHHHTTCGGGHHHHHHHHHHHTTCSCC
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHccchHHHHHHHhCCCChHHHHHHHHHHHHHcCCchh
Confidence            4577788888877  8999999999999999987  6666666 56999999999999999999999999999998542 


Q ss_pred             ----------------------------hhH---HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh
Q 017249          101 ----------------------------RNK---VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA  149 (375)
Q Consensus       101 ----------------------------~~r---~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~  149 (375)
                                                  .++   ..+++.|++|.|+.+|+++++.+++.|+++|.|++.+++++..+..
T Consensus       455 q~~~~~l~~la~~s~~~v~~~~~ld~~~~v~~r~~~VveaGaVp~LV~LL~s~s~~vqe~Aa~aL~NLA~d~~~r~~Vv~  534 (810)
T 3now_A          455 QEMLPEMIELAKFAKQHIPEEHELDDVDFINKRITVLANEGITTALCALAKTESHNSQELIARVLNAVCGLKELRGKVVQ  534 (810)
T ss_dssp             CCCCCSCGGGTTTTCCSCCCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTCCCHHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHhhccCccccccccHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence                                        123   6788999999999999999999999999999999988778999999


Q ss_pred             cCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh---hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-h
Q 017249          150 SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI---LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-E  225 (375)
Q Consensus       150 ~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i---~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~  225 (375)
                      .|++++|+.+|.+++...+..|+++|.+|+.+.+....+   ...|++++|+.+|.++. ....+..|+++|.||+.. +
T Consensus       535 ~Gaip~Lv~LL~s~~~~~k~~Aa~AL~nL~~~~~p~~~~~~~~~~~aIppLv~LL~~~~-~~l~~~eAl~AL~NLa~~~d  613 (810)
T 3now_A          535 EGGVKALLRMALEGTEKGKRHATQALARIGITINPEVSFSGQRSLDVIRPLLNLLQQDC-TALENFESLMALTNLASMNE  613 (810)
T ss_dssp             TTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHTTTHHHHHTHHHHHHTTSTTS-CHHHHHHHHHHHHHHTTSCH
T ss_pred             CCCHHHHHHHHccCCHHHHHHHHHHHHHHhcCCChhhhhcchhhhcHHHHHHHHhCCCC-cHHHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999999999998653322221   12469999999998542 323345799999999987 5


Q ss_pred             hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249          226 EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGTFEAQERARTLLD  304 (375)
Q Consensus       226 ~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~~~~~~~A~~~L~  304 (375)
                      +.+..++ +.|+++.|+.+|.++++.++..|+++|+|++.+.  +.+..+.+ .|.++.|+.++.+.+..+|+.|+++|+
T Consensus       614 ~~~~~Ii-~aG~l~~Lv~LL~s~~~~Vq~~A~~~L~NLa~~~--~~~~~~v~~~g~l~~Lv~LL~s~d~~vq~~Aa~ALa  690 (810)
T 3now_A          614 SVRQRII-KEQGVSKIEYYLMEDHLYLTRAAAQCLCNLVMSE--DVIKMFEGNNDRVKFLALLCEDEDEETATACAGALA  690 (810)
T ss_dssp             HHHHHHH-HTTHHHHHHHHHHSCCTTHHHHHHHHHHHHTTSH--HHHHHHHSSSSHHHHHHHGGGCSSHHHHHHHHHHHH
T ss_pred             HHHHHHH-HcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCh--HHHHHHHhccCcHHHHHHHhcCCCHHHHHHHHHHHH
Confidence            6677777 6899999999999999999999999999999875  55666775 789999999999999999999999999


Q ss_pred             HhhcC-Ch--hhhhh-hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          305 LLRDT-PQ--EKRLS-SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       305 ~l~~~-~~--~~~~~-~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      +++.. ..  +.++. .|++++|+..|.   +++.+.+..|..++.++...+
T Consensus       691 nLt~~s~~~~~~ii~~~g~I~~Lv~LL~---s~d~~vq~~A~~aL~NL~~~s  739 (810)
T 3now_A          691 IITSVSVKCCEKILAIASWLDILHTLIA---NPSPAVQHRGIVIILNMINAG  739 (810)
T ss_dssp             HHHHHCHHHHHHHHTSTTHHHHHHHHHT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHhCCCHHHHHHHHHHcCCHHHHHHHHC---CCCHHHHHHHHHHHHHHHhCC
Confidence            99984 32  25677 899999998885   577999999999999998654

>1wa5_B Importin alpha subunit; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1un0_A 2c1t_A 1bk5_A 1ee5_A 1bk6_A 1ee4_A

Probab=100.00  E-value=2.1e-31  Score=261.44  Aligned_cols=323  Identities=17%  Similarity=0.162  Sum_probs=283.9

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ..+.++.|+..|++++++.+..|++.|.+++.......+..+++.|+++.|+++|.++ ++.++..|+++|.+++.++++
T Consensus        85 ~~~~i~~lv~~L~s~~~~~~~~A~~~L~~ll~~~~~~~~~~~~~~g~i~~Lv~~L~~~~~~~v~~~A~~~L~~l~~~~~~  164 (530)
T 1wa5_B           85 LQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSA  164 (530)
T ss_dssp             --CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCHH
T ss_pred             hHHHHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCCCccHHHHHHCCCHHHHHHHhCCCCCHHHHHHHHHHHHHHhCCCHH
Confidence            4567999999999999999999999999997653235667788999999999999997 899999999999999998888


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      .+..++..|+++.|+.+|.++++.+++.|+++|++++.+. +.+..+...|+++.|+.+|.+.+..++..++++|.+|+.
T Consensus       165 ~~~~~~~~g~i~~Lv~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~ll~~~~~~v~~~a~~~L~~L~~  244 (530)
T 1wa5_B          165 QTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCR  244 (530)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCCccchHHHHHcCcHHHHHHHhccCCHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999999999999999875 467777888999999999999999999999999999997


Q ss_pred             CC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          181 CK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       181 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      .. +........++++.|+.++.++  +..++..++++|.+|+.. ++....++ +.|+++.|+.+|.++++.++..|++
T Consensus       245 ~~~~~~~~~~~~~~l~~L~~lL~~~--d~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~Lv~lL~~~~~~v~~~a~~  321 (530)
T 1wa5_B          245 GKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPALR  321 (530)
T ss_dssp             CSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHHH
T ss_pred             CCCCCCcHHHHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhCCCHHHHHHHH-hcCcHHHHHHHHCCCChhhHHHHHH
Confidence            75 5556666789999999999876  457889999999999976 45556666 6899999999999999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD  335 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~  335 (375)
                      +|.+++.+. +.....+++.|+++.|+.++.++++.+++.|+++|.+++...+.   .++..|+++.|+..|.   ++.+
T Consensus       322 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~lL~~~~~~vr~~A~~aL~~l~~~~~~~~~~~~~~~~l~~L~~lL~---~~~~  397 (530)
T 1wa5_B          322 AVGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAEY  397 (530)
T ss_dssp             HHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HSCH
T ss_pred             HHHHHHcCC-HHHHHHHHHcchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence            999999887 46677788899999999999999999999999999999986643   4567899999999886   4558


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 017249          336 KAAETAKRLLQDMVQRS  352 (375)
Q Consensus       336 ~~~~~a~~~l~~l~~~s  352 (375)
                      ..+..|..+|.+|...+
T Consensus       398 ~v~~~a~~aL~~l~~~~  414 (530)
T 1wa5_B          398 KTKKEACWAISNASSGG  414 (530)
T ss_dssp             HHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHhcC
Confidence            99999999999998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=100.00  E-value=4.2e-31  Score=253.55  Aligned_cols=320  Identities=17%  Similarity=0.174  Sum_probs=280.9

Q ss_pred             hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           25 ALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        25 ~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      +.++.|+..|+++ ++.++..|+++|.+++.+. ++....+++.|+++.|+++|++++++++..|+++|.+++.+++.++
T Consensus        64 ~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~  142 (450)
T 2jdq_A           64 GVVARFVEFLKRKENCTLQFESAWVLTNIASGN-SLQTRIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCR  142 (450)
T ss_dssp             THHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             CcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHH
Confidence            8999999999988 8999999999999999987 6777888899999999999999999999999999999999888899


Q ss_pred             HHHHHcCChHHHHHhhcC-CChHHHHHHHHHHHHhhccC-C-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          104 VKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAAA-P-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~-~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      ..+.+.|+++.|+.++.+ .++.++..++++|.+++... + .+..+ ..++++.|++++.+++..++..++++|.+|+.
T Consensus       143 ~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~  221 (450)
T 2jdq_A          143 DYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRGKSPPPEFAK-VSPCLNVLSWLLFVSDTDVLADACWALSYLSD  221 (450)
T ss_dssp             HHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCCSSSCCCGGG-TGGGHHHHHHHTTCCCHHHHHHHHHHHHHHTS
T ss_pred             HHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCCCCCCCCHHH-HHHHHHHHHHHHccCCHHHHHHHHHHHHHHHC
Confidence            999999999999999996 68999999999999999764 3 23333 37899999999999999999999999999997


Q ss_pred             CC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhH-HHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          181 CK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI-AITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       181 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      .. +....+...|+++.|+.++.+.  +..++..++++|++++...+... .++ +.|+++.|+.+|.++++.++..|++
T Consensus       222 ~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~l~~L~~ll~~~~~~vr~~a~~  298 (450)
T 2jdq_A          222 GPNDKIQAVIDAGVCRRLVELLMHN--DYKVVSPALRAVGNIVTGDDIQTQVIL-NCSALQSLLHLLSSPKESIKKEACW  298 (450)
T ss_dssp             SSHHHHHHHHHTTTHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-TTTHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             CCcHHHHHHHHcCcHHHHHHHHCCC--chhHHHHHHHHHHHHhhCChHHHHHHH-HCccHHHHHHHHcCCCHHHHHHHHH
Confidence            64 5566777889999999999865  45788999999999998655544 455 6799999999999999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC-Chh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT-PQE---KRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~-~~~---~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      +|.+++.+. ++..+.+++.|+++.|+.++.++++.+|+.|+++|.+++.. .+.   .++..|+++.|+..+.   +++
T Consensus       299 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~L~~l~~~~~~~~~~~l~~~~~i~~L~~ll~---~~~  374 (450)
T 2jdq_A          299 TISNITAGN-RAQIQTVIDANIFPALISILQTAEFRTRKEAAWAITNATSGGSAEQIKYLVELGCIKPLCDLLT---VMD  374 (450)
T ss_dssp             HHHHHTTSC-HHHHHHHHHTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHTCHHHHHHGGG---SSC
T ss_pred             HHHHHHcCC-HHHHHHHHHCCCHHHHHHHHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHCCCHHHHHHHhc---CCC
Confidence            999999876 46677788899999999999999999999999999999864 322   4667899999998885   445


Q ss_pred             HHHHHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQRSM  353 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~~s~  353 (375)
                      ++.+..|..+|.+|.....
T Consensus       375 ~~v~~~a~~aL~~l~~~~~  393 (450)
T 2jdq_A          375 SKIVQVALNGLENILRLGE  393 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhch
Confidence            8999999999999986544

>3nmw_A APC variant protein; ARMADIILO repeats domain, cell adhesion-cell cycle complex; 1.60A {Homo sapiens} PDB: 3nmx_A 3t7u_A 3au3_A 3qhe_A

Probab=100.00  E-value=3.6e-32  Score=251.46  Aligned_cols=265  Identities=20%  Similarity=0.200  Sum_probs=228.3

Q ss_pred             HHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcC-----------CChHHHHHHHHHHHHhhccCC-ChhHHHh
Q 017249           82 LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-----------QNGTLRELAAAAILTLSAAAP-NKPAIAA  149 (375)
Q Consensus        82 ~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~-----------~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~  149 (375)
                      ...+..|+++|.+++.+ +++|..+++.|++++|+.+|.+           .++.+++.|+++|.||+..++ ++..+..
T Consensus        46 ~~~~~~A~~aL~nls~d-~e~R~~i~~~G~l~~Lv~LL~~~~~~~~~~~~~~~~~~q~~Aa~aL~nLa~~~~~~k~~i~~  124 (354)
T 3nmw_A           46 EHQICPAVCVLMKLSFD-EEHRHAMNELGGLQAIAELLQVDCEMYGLTNDHYSITLRRYAGMALTNLTFGDVANKATLCS  124 (354)
T ss_dssp             GGTHHHHHHHHHHHHTS-HHHHHHHHHTTHHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            35566899999999994 8999999999999999999952           247789999999999998765 6666654


Q ss_pred             -cCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-Ch
Q 017249          150 -SGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SE  225 (375)
Q Consensus       150 -~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~  225 (375)
                       .|+++.|+++|+++++.++..|+++|.||+..  ++++..+++.|+++.|+++|.++. +..+++.++++|+||+. ++
T Consensus       125 ~~GaIp~LV~LL~s~~~~v~~~A~~aL~nLs~~~~~~~k~~i~~~G~Ip~Lv~lL~~~~-~~~~~~~A~~aL~nLs~~~~  203 (354)
T 3nmw_A          125 MKGCMRALVAQLKSESEDLQQVIASVLRNLSWRADVNSKKTLREVGSVKALMECALEVK-KESTLKSVLSALWNLSAHCT  203 (354)
T ss_dssp             CHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHTTCCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHTTCH
T ss_pred             cCCcHHHHHHHHCCCCHHHHHHHHHHHHHHhccCCHHHHHHHHHCCCHHHHHHHHhcCC-CHHHHHHHHHHHHHHHccCh
Confidence             45699999999999999999999999999975  467888999999999999865533 44678899999999998 77


Q ss_pred             hhhHHHhhccCcHHHHHHHhccCCh----HHHHHHHHHHHHhcc---cCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHH
Q 017249          226 EGRIAITNSDGGILTLVETVEDGSL----VSTQHAVGALLSLCQ---SCRDKYRQLILKEGAIPGLLRLTVEGTFEAQER  298 (375)
Q Consensus       226 ~~~~~~~~~~g~v~~Lv~lL~~~~~----~~~~~a~~~L~~l~~---~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~  298 (375)
                      +++..+....|+++.|+.+|.++++    .+++.|+++|+|++.   .. ++.+..+.+.|+++.|+.++.++++.+++.
T Consensus       204 ~nk~~i~~~~Gai~~Lv~lL~~~~~~~~~~v~~~A~~aL~nLs~~~a~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~  282 (354)
T 3nmw_A          204 ENKADICAVDGALAFLVGTLTYRSQTNTLAIIESGGGILRNVSSLIATN-EDHRQILRENNCLQTLLQHLKSHSLTIVSN  282 (354)
T ss_dssp             HHHHHHHHSTTHHHHHHHHTTCCCSSSCCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHTTTHHHHHHHHTTCSCHHHHHH
T ss_pred             hhhHHHHHhcCcHHHHHHHhccCCCcccHHHHHHHHHHHHHHHhhccCC-HHHHHHHHHcCCHHHHHHHHcCCChHHHHH
Confidence            8888887568999999999987654    489999999999997   34 578899999999999999999999999999


Q ss_pred             HHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          299 ARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       299 A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      |+++|.+|+...+   ..+.+.|++++|+..|.   +++++.++.|..+|.+|....
T Consensus       283 A~~aL~nLa~~~~~~~~~i~~~G~i~~Lv~LL~---s~~~~i~~~A~~aL~nL~~~~  336 (354)
T 3nmw_A          283 ACGTLWNLSARNPKDQEALWDMGAVSMLKNLIH---SKHKMIAMGSAAALRNLMANR  336 (354)
T ss_dssp             HHHHHHHHTSSCHHHHHHHHHTTHHHHHHTTTT---CSSHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHhCCCHHHHHHHHHCCCHHHHHHHHh---CCCHHHHHHHHHHHHHHHcCC
Confidence            9999999995442   26788999999998774   567999999999999998653

>2jdq_A Importin alpha-1 subunit; transport, PB2 subunit, nuclear protein, protein transport, armadillo repeats; 2.2A {Homo sapiens} PDB: 3tj3_A

Probab=99.98  E-value=1.3e-29  Score=243.06  Aligned_cols=318  Identities=19%  Similarity=0.195  Sum_probs=273.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCC-CHHHHHHHHHHHHHhhccChhhH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSP-NLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      .++.|++.|++++++++..|+..|.++...........+++. |+++.|+++|.++ ++.++..|+++|.+++.++++..
T Consensus        21 ~l~~l~~~l~s~~~~~r~~A~~~L~~l~~~~~~~~~~~~~~~~~~i~~L~~~L~~~~~~~v~~~a~~~L~~l~~~~~~~~  100 (450)
T 2jdq_A           21 ITSDMIEMIFSKSPEQQLSATQKFRKLLSKEPNPPIDEVISTPGVVARFVEFLKRKENCTLQFESAWVLTNIASGNSLQT  100 (450)
T ss_dssp             -CHHHHHHHHSSCHHHHHHHHHHHHHHHHSSSSCCHHHHHTSTTHHHHHHHHHTCTTCHHHHHHHHHHHHHHHSSCHHHH
T ss_pred             cHHHHHHHhcCCCHHHHHHHHHHHHHHhcCCCCCcHHHHHHcCCcHHHHHHHHCCCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            488999999999999999999999998752102333456677 9999999999998 89999999999999999888888


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~  181 (375)
                      ..+++.|++|.|+++|.++++.+++.|+++|.+++.+.+ .+..+...|+++.|+.++.+ .+..++..++++|.+|+..
T Consensus       101 ~~~~~~~~i~~L~~lL~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~v~~~a~~~L~~l~~~  180 (450)
T 2jdq_A          101 RIVIQAGAVPIFIELLSSEFEDVQEQAVWALGNIAGDSTMCRDYVLDCNILPPLLQLFSKQNRLTMTRNAVWALSNLCRG  180 (450)
T ss_dssp             HHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTTSCCCHHHHHHHHHHHHHHHCC
T ss_pred             HHHHhCCCHHHHHHHHcCCCHHHHHHHHHHHHHHccCCHHHHHHHHHCCCHHHHHHHhcCCCCHHHHHHHHHHHHHHhCC
Confidence            888999999999999999999999999999999998754 56777788999999999996 6899999999999999976


Q ss_pred             C--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          182 K--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       182 ~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      .  .....++ .++++.|+.++.++  +..++..++++|.+++.. ++....+. ..|+++.|+.+|.++++.++..|++
T Consensus       181 ~~~~~~~~~~-~~~l~~L~~~l~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~  256 (450)
T 2jdq_A          181 KSPPPEFAKV-SPCLNVLSWLLFVS--DTDVLADACWALSYLSDGPNDKIQAVI-DAGVCRRLVELLMHNDYKVVSPALR  256 (450)
T ss_dssp             SSSCCCGGGT-GGGHHHHHHHTTCC--CHHHHHHHHHHHHHHTSSSHHHHHHHH-HTTTHHHHHHHTTCSCHHHHHHHHH
T ss_pred             CCCCCCHHHH-HHHHHHHHHHHccC--CHHHHHHHHHHHHHHHCCCcHHHHHHH-HcCcHHHHHHHHCCCchhHHHHHHH
Confidence            4  3333333 78999999999875  457889999999999985 45555565 6899999999999999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChH
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGAD  335 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~  335 (375)
                      +|.+++.+. +...+.+.+.|+++.|+.++.++++.+++.|+++|.+++...+.   .++..|+++.|+..|.   ++.+
T Consensus       257 ~L~~l~~~~-~~~~~~~~~~~~l~~L~~ll~~~~~~vr~~a~~~L~~l~~~~~~~~~~~~~~~~l~~L~~~l~---~~~~  332 (450)
T 2jdq_A          257 AVGNIVTGD-DIQTQVILNCSALQSLLHLLSSPKESIKKEACWTISNITAGNRAQIQTVIDANIFPALISILQ---TAEF  332 (450)
T ss_dssp             HHHHHTTSC-HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHHH---HSCH
T ss_pred             HHHHHhhCC-hHHHHHHHHCccHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHh---cCCH
Confidence            999999987 45677788899999999999999999999999999999976533   4667899999998886   4568


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          336 KAAETAKRLLQDMVQR  351 (375)
Q Consensus       336 ~~~~~a~~~l~~l~~~  351 (375)
                      +.+..|..+|.++...
T Consensus       333 ~v~~~a~~~L~~l~~~  348 (450)
T 2jdq_A          333 RTRKEAAWAITNATSG  348 (450)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcC
Confidence            9999999999999865

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=1e-29  Score=249.02  Aligned_cols=320  Identities=19%  Similarity=0.169  Sum_probs=273.1

Q ss_pred             hhhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHH
Q 017249           14 QEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL   93 (375)
Q Consensus        14 ~~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~   93 (375)
                      +.+++..+.+.++++.|+.+|++++++++..|+++|.+++.++ +..+..+.+.|+++.|+++|.+++.+++..++.+|.
T Consensus        90 ~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~  168 (529)
T 1jdh_A           90 HREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQ  168 (529)
T ss_dssp             SHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHC-TTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHH
T ss_pred             CchhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            3457788888999999999999999999999999999999997 678888999999999999999999999999999999


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAV  172 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~  172 (375)
                      +++.++++++..+.+.|+++.|+.++++.+ ...+..++.+|++++.+++++..+...|+++.|++++.+++..++..++
T Consensus       169 ~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~~~~~~~~a~  248 (529)
T 1jdh_A          169 ILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCL  248 (529)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSSCHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhCCChHHHHHHH
Confidence            999988999999999999999999998774 5567778999999999888889999999999999999999999999999


Q ss_pred             HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhcc--CC
Q 017249          173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVED--GS  249 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~--~~  249 (375)
                      ++|.+|+.......  ...++++.|++++.+.  ++.++..++++|++|+.. ++++..+. +.|+++.|+.+|.+  .+
T Consensus       249 ~~L~~l~~~~~~~~--~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~L~~~~~~~~~~~~-~~~~v~~L~~ll~~~~~~  323 (529)
T 1jdh_A          249 WTLRNLSDAATKQE--GMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDR  323 (529)
T ss_dssp             HHHHHHHTTCTTCS--CCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTTCHHHHHHHH-HTTHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCChhhH--HHHhHHHHHHHHHcCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH-HcCChHHHHHHHHccCCH
Confidence            99999997653322  2247899999999765  557889999999999986 56777777 68999999999975  33


Q ss_pred             hHHHHHHHHHHHHhcccCc--HHHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCR--DKYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIV  324 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~--~~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~  324 (375)
                      +.++..|+++|+|++.++.  +..+..+.+.|+++.|+.++.+++ +.+++.|+++|++++.++..  .+.+.|+++.|+
T Consensus       324 ~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~~lL~~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~~~i~~L~  403 (529)
T 1jdh_A          324 EDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLV  403 (529)
T ss_dssp             HHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHHHHhccccchHHHHHHHHHHHHHhcChhhhHHHHHcCCHHHHH
Confidence            7899999999999988643  235778889999999999999776 69999999999999987633  567889999999


Q ss_pred             HHHhhcCCChHHHHHHHH
Q 017249          325 YDIAARVDGADKAAETAK  342 (375)
Q Consensus       325 ~~l~~~~~g~~~~~~~a~  342 (375)
                      ..|.   ++....+..|.
T Consensus       404 ~ll~---~~~~~v~~~a~  418 (529)
T 1jdh_A          404 QLLV---RAHQDTQRRTS  418 (529)
T ss_dssp             HHHH---HHHHHHC----
T ss_pred             HHHH---HHhHHHHHHHh
Confidence            8886   23344444443

>1jdh_A Beta-catenin; beta-catenin, protein-protein complex, transcription; 1.90A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qz7_A 1g3j_A 1th1_A* 1i7w_A* 1i7x_A 1jpp_A 1m1e_A 1v18_A* 3oux_A 3ouw_A 1jpw_A 3tx7_A* 2gl7_A 1t08_A 1luj_A 2bct_A 3bct_A* 3ifq_A* 3sla_A 3sl9_A

Probab=99.97  E-value=2.5e-29  Score=246.19  Aligned_cols=323  Identities=20%  Similarity=0.217  Sum_probs=278.8

Q ss_pred             HHHHHh-hHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           17 EAWNQR-KQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        17 ~~~~~~-~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      ++..+. ..+.++.|++.|.+ ++++.+..|+.+|.+++...  +++..+.+.|+++.|+++|++++++++..++++|.+
T Consensus        50 ~~~~~~~~~~~i~~Lv~~L~~~~~~~~~~~a~~~L~~ls~~~--~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~  127 (529)
T 1jdh_A           50 SRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHN  127 (529)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHH
T ss_pred             cHHHHHhCcchHHHHHHHHhcCCCHHHHHHHHHHHHHHHcCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            333333 45899999999975 58999999999999998876  699999999999999999999999999999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCH-HHHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSV-QGRVDAV  172 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~  172 (375)
                      ++.+++..+..+.+.|++|.|+.++.++++.++..++.+|.+++.. ++++..+...|+++.|+++|++++. ..+..++
T Consensus       128 l~~~~~~~~~~i~~~g~i~~L~~ll~~~~~~~~~~~~~~L~~la~~~~~~~~~i~~~~~i~~L~~ll~~~~~~~~~~~a~  207 (529)
T 1jdh_A          128 LLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTS  207 (529)
T ss_dssp             HHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHH
T ss_pred             HhcCCcchHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHhCChHHHHHHHH
Confidence            9998778899999999999999999999999999999999999985 4577788888999999999988764 5577789


Q ss_pred             HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHH
Q 017249          173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS  252 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~  252 (375)
                      .+|++|+..++++..+++.|+++.|+.++.++  +..++..++++|.+|+.......  . ..|+++.|+.+|.++++.+
T Consensus       208 ~~L~~l~~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~L~~l~~~~~~~~--~-~~~~i~~L~~ll~~~~~~v  282 (529)
T 1jdh_A          208 RVLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINV  282 (529)
T ss_dssp             HHHHHHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHH
T ss_pred             HHHHHHhcCcccHHHHHHCCCHHHHHHHHhCC--ChHHHHHHHHHHHHHhcCChhhH--H-HHhHHHHHHHHHcCCCHHH
Confidence            99999999888999999999999999999876  45788899999999998654332  1 3478999999999999999


Q ss_pred             HHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCCh------hhhhhhhhHHHHH
Q 017249          253 TQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTPQ------EKRLSSSVLEKIV  324 (375)
Q Consensus       253 ~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~~------~~~~~~g~~~~l~  324 (375)
                      +..|+++|++++.++ ++.+..+.+.|+++.|++++.+  .++.+++.|+++|++++...+      ..+...|+++.|+
T Consensus       283 ~~~a~~~L~~L~~~~-~~~~~~~~~~~~v~~L~~ll~~~~~~~~v~~~a~~~L~nl~~~~~~~~~~~~~i~~~~~i~~L~  361 (529)
T 1jdh_A          283 VTCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVV  361 (529)
T ss_dssp             HHHHHHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhcCC-HHHHHHHHHcCChHHHHHHHHccCCHHHHHHHHHHHHHHHHcCCchHHHHHHHHHHcCChhHHH
Confidence            999999999999876 5778899999999999999975  348999999999999987642      2567789999999


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          325 YDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       325 ~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ..|..  ...+..+..|.++|.++.
T Consensus       362 ~lL~~--~~~~~v~~~a~~~l~nl~  384 (529)
T 1jdh_A          362 KLLHP--PSHWPLIKATVGLIRNLA  384 (529)
T ss_dssp             HTTST--TCCHHHHHHHHHHHHHHT
T ss_pred             HHhcc--ccchHHHHHHHHHHHHHh
Confidence            88862  223678888888888875

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=2e-28  Score=245.71  Aligned_cols=330  Identities=19%  Similarity=0.166  Sum_probs=281.4

Q ss_pred             hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      .+++..+.+.+.++.|+.+|+++++.++..|+++|.+++... +..+..+++.|+++.|+++|++++++++..++.+|.+
T Consensus        88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~-~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~  166 (644)
T 2z6h_A           88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  166 (644)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCc-chhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHH
Confidence            447778888899999999999999999999999999999997 6788888999999999999999999999999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT  173 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~  173 (375)
                      ++.++++++..+.+.|+++.|+.+|++.+ ..++..++.+|++|+.+++++..+...|+++.|++++.+++..++..+++
T Consensus       167 La~~~~~~~~~i~~~g~v~~Lv~lL~~~~~~~~~~~a~~~L~nLs~~~~~~~~l~~~g~l~~L~~ll~~~~~~~~~~a~~  246 (644)
T 2z6h_A          167 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  246 (644)
T ss_dssp             HHTTCHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHTTCTTHHHHHHHTTHHHHHHTTTTCSCHHHHHHHHH
T ss_pred             HHhcCcHHHHHHHHcCChHHHHHHHHcCChHHHHHHHHHHHHHHhcCcccHHHHHHCCCHHHHHHHHhcCCHHHHHHHHH
Confidence            99878999999999999999999998774 67788999999999998888999999999999999999999999999999


Q ss_pred             HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccC--Ch
Q 017249          174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDG--SL  250 (375)
Q Consensus       174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~--~~  250 (375)
                      +|.+|+......  ....++++.|++++.+.  +..+++.++++|.+|+.. +.++..+. +.|+++.|+.+|.+.  .+
T Consensus       247 ~L~nL~~~~~~~--~~~~~~i~~Lv~lL~~~--d~~v~~~a~~aL~~L~~~~~~~~~~v~-~~g~v~~Lv~lL~~~~~~~  321 (644)
T 2z6h_A          247 TLRNLSDAATKQ--EGMEGLLGTLVQLLGSD--DINVVTCAAGILSNLTCNNYKNKMMVC-QVGGIEALVRTVLRAGDRE  321 (644)
T ss_dssp             HHHHHGGGCTTC--CSCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHhhcchhh--hhhhhHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH-HcCCHHHHHHHHHccCCcH
Confidence            999999764332  12247899999999865  457889999999999986 56677777 689999999999863  27


Q ss_pred             HHHHHHHHHHHHhcccCcH--HHHHHHHHcCChHHHHHHhhhCC-HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHH
Q 017249          251 VSTQHAVGALLSLCQSCRD--KYRQLILKEGAIPGLLRLTVEGT-FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVY  325 (375)
Q Consensus       251 ~~~~~a~~~L~~l~~~~~~--~~~~~l~~~g~v~~L~~ll~~~~-~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~  325 (375)
                      .++..|+++|.+|+.....  ..+..+.+.|+++.|++++.+.+ +.+++.|+++|++|+.+...  .++..|+++.|+.
T Consensus       322 ~v~~~a~~aL~nL~~~~~~~~~~q~~v~~~~~l~~L~~lL~~~~~~~v~~~a~~~L~nLa~~~~~~~~i~~~~~i~~Lv~  401 (644)
T 2z6h_A          322 DITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQ  401 (644)
T ss_dssp             HHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTHHHHHHHTTSTTCCHHHHHHHHHHHHHHTTSGGGHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCchHHHHHHHHHHccChHHHHHHhCccCchHHHHHHHHHHHHHccCHHHHHHHHHcCCHHHHHH
Confidence            8999999999999975421  34556788999999999998764 79999999999999987643  5778999999998


Q ss_pred             HHhhcC-----------------C--ChHHHHHHHHHHHHHHHH
Q 017249          326 DIAARV-----------------D--GADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       326 ~l~~~~-----------------~--g~~~~~~~a~~~l~~l~~  350 (375)
                      .|....                 +  .....++.+..+|.+|..
T Consensus       402 lL~~~~~~vr~~a~~al~n~~~~~~~~~~~v~~~a~~aL~~La~  445 (644)
T 2z6h_A          402 LLVRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILAR  445 (644)
T ss_dssp             HHHHHHHHHTTC----------CCSSCHHHHHHHHHHHHHHHTT
T ss_pred             HHhccchhhhhHhhhccccchhcccccHHHHHHHHHHHHHHHhc
Confidence            886421                 1  134566777888887753

>2z6h_A Catenin beta-1, beta-catenin; C-terminal domain, activator, alternative splicing, cell adhesion, cytoplasm, cytoskeleton, disease mutation, nucleus; 2.20A {Homo sapiens}

Probab=99.97  E-value=4.4e-29  Score=250.50  Aligned_cols=319  Identities=20%  Similarity=0.223  Sum_probs=279.7

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCC-CHHHHHHHHHHHHHhhccC
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSP-NLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~-~~~~~~~a~~~L~~L~~~~   99 (375)
                      ...+.++.|+.+|+++++.++..|+.+|.+++.+.  .++..+... |+++.|++.|.++ +++++..|+.+|.+|+. +
T Consensus        11 ~~~g~i~~Lv~lL~~~~~~vr~~A~~~L~~La~~~--~~~~~i~~~~~~i~~Lv~~L~~~~~~~~~~~A~~~L~~Ls~-~   87 (644)
T 2z6h_A           11 LATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-H   87 (644)
T ss_dssp             -CTTTHHHHHHHHTCSCHHHHHHHHHHHHHHHTST--THHHHHTTCHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTT-S
T ss_pred             hhhchHHHHHHHHcCCCHHHHHHHHHHHHHHHCCC--hhHHHHHhccChHHHHHHHHhcCCCHHHHHHHHHHHHHHhc-C
Confidence            56788999999999999999999999999999988  577767655 8999999999865 89999999999999998 4


Q ss_pred             hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      ++++..+.+.|+++.|+.+|+++++.++..|+++|.+++...+ .+..+...|+++.|+++|++++..++..++.+|.+|
T Consensus        88 ~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~A~~aL~nL~~~~~~~~~~v~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  167 (644)
T 2z6h_A           88 REGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQIL  167 (644)
T ss_dssp             HHHHHHHHTTTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHHcCCHHHHHHHHhCCCHHHHHHHHHHHHHHHhCcchhHHHHHHCCChHHHHHHHCcCCHHHHHHHHHHHHHH
Confidence            6799999999999999999999999999999999999998854 566677899999999999999999999999999999


Q ss_pred             cc-CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249          179 ST-CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV  257 (375)
Q Consensus       179 ~~-~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~  257 (375)
                      +. .++++..+.+.|+++.|++++.+.+ ...+++.++.+|++|+.++.++..++ +.|+++.|+.++.+++..++..++
T Consensus       168 a~~~~~~~~~i~~~g~v~~Lv~lL~~~~-~~~~~~~a~~~L~nLs~~~~~~~~l~-~~g~l~~L~~ll~~~~~~~~~~a~  245 (644)
T 2z6h_A          168 AYGNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNCL  245 (644)
T ss_dssp             HTTCHHHHHHHHHTTHHHHHHHHHTTCC-CHHHHHHHHHHHHHHTTCTTHHHHHH-HTTHHHHHHTTTTCSCHHHHHHHH
T ss_pred             HhcCcHHHHHHHHcCChHHHHHHHHcCC-hHHHHHHHHHHHHHHhcCcccHHHHH-HCCCHHHHHHHHhcCCHHHHHHHH
Confidence            96 5678888999999999999999875 45677889999999999999999998 689999999999999999999999


Q ss_pred             HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh---hhhhhhhhHHHHHHHHhhcCCCh
Q 017249          258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ---EKRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~---~~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      ++|.+++.....    .....++++.|+.++.+.++.+++.|+++|.+|+...+   ..+.+.|+++.|+..|....+ .
T Consensus       246 ~~L~nL~~~~~~----~~~~~~~i~~Lv~lL~~~d~~v~~~a~~aL~~L~~~~~~~~~~v~~~g~v~~Lv~lL~~~~~-~  320 (644)
T 2z6h_A          246 WTLRNLSDAATK----QEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-R  320 (644)
T ss_dssp             HHHHHHGGGCTT----CCSCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTT-C
T ss_pred             HHHHHHhhcchh----hhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHHccCC-c
Confidence            999999987532    11124789999999999999999999999999998763   367788999999998874322 2


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQ  350 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~  350 (375)
                      +..+..|..+|.+|..
T Consensus       321 ~~v~~~a~~aL~nL~~  336 (644)
T 2z6h_A          321 EDITEPAICALRHLTS  336 (644)
T ss_dssp             HHHHHHHHHHHHHHTS
T ss_pred             HHHHHHHHHHHHHHhc
Confidence            7889999999999964

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.97  E-value=6.9e-29  Score=219.42  Aligned_cols=240  Identities=23%  Similarity=0.284  Sum_probs=220.0

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~  146 (375)
                      |+++.|+++|.+++++++..|+++|.+++.++++++..+.+.|+++.|+.+|+++++.++..++++|.+++.+ ++++..
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~   81 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGPASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKA   81 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHHH
Confidence            5789999999999999999999999999998888999999999999999999999999999999999999988 557888


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc-cCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      +...|+++.|+.+|+++++.++..++++|.+|+ ..++++..+.+.|+++.|++++.++  +..++..++++|++|+...
T Consensus        82 ~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~--~~~~~~~a~~~L~~l~~~~  159 (252)
T 4hxt_A           82 IVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGP  159 (252)
T ss_dssp             HHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999 4567888889999999999999976  4578899999999999854


Q ss_pred             h-hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249          226 E-GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD  304 (375)
Q Consensus       226 ~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~  304 (375)
                      + .+..+. +.|+++.|+.++.++++.++..|+++|.+++..+ +..+..+.+.|+++.|++++.++++.+++.|+++|.
T Consensus       160 ~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~l~~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          160 DEAIKAIV-DAGGVEVLVKLLTSTDSEVQKEAARALANIASGP-TSAIKAIVDAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             HHHHHHHH-HTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSB-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHH-HCcCHHHHHHHHCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            4 445666 6899999999999999999999999999999865 577888999999999999999999999999999999


Q ss_pred             HhhcCCh
Q 017249          305 LLRDTPQ  311 (375)
Q Consensus       305 ~l~~~~~  311 (375)
                      +++...+
T Consensus       238 ~l~~~~~  244 (252)
T 4hxt_A          238 NIKSGGW  244 (252)
T ss_dssp             HHHHTCB
T ss_pred             HHHcCCC
Confidence            9998764

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=1.2e-27  Score=244.24  Aligned_cols=328  Identities=20%  Similarity=0.206  Sum_probs=270.9

Q ss_pred             hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      .+++..+...++++.|+.+|+++++.++..|+++|.+++... +..+..+.+.|+++.|+++|.+++.+++..++.+|.+
T Consensus       224 ~~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nLa~~~-~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~  302 (780)
T 2z6g_A          224 REGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNLLLHQ-EGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQI  302 (780)
T ss_dssp             HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHS-TTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHH
T ss_pred             chhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhCCC-hhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            345667788899999999999999999999999999999997 6788888899999999999999999999999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHHHhhcCCC-hHHHHHHHHHHHHhhccCCChhHHHhcCChHH------------------
Q 017249           95 LAVRNERNKVKIATAGAIPPLVELLKFQN-GTLRELAAAAILTLSAAAPNKPAIAASGAAPL------------------  155 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~-~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~------------------  155 (375)
                      ++.++++++..+...|+++.|+.+|++.+ ...+..++.+|++|+....++..+...|+++.                  
T Consensus       303 La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~~~~~~~~a~~  382 (780)
T 2z6g_A          303 LAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLKVLSVCSSNKPAIVEAGGMQALGLHLTDPSQRLVQNCLW  382 (780)
T ss_dssp             HHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSTTHHHHHHHTTHHHHHGGGTTCSCHHHHHHHHH
T ss_pred             HhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhhcChHHHHHHHHhchHHHHHHHHcCCchHHHHHHHH
Confidence            99888999999999999999999998775 44566788888888877666666655555544                  


Q ss_pred             ---------------------HHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249          156 ---------------------LVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEK  213 (375)
Q Consensus       156 ---------------------L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  213 (375)
                                           |+.+|++.+..++..|+++|.+|+..+ +++..+.+.|+++.|+.++.+......++..
T Consensus       383 ~L~~L~~~~~~~~~~~~~i~~Lv~lL~~~d~~vr~~A~~aL~~L~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~  462 (780)
T 2z6g_A          383 TLRNLSDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGDREDITEP  462 (780)
T ss_dssp             HHHHHHTTCTTCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTSSCHHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHhccchhhhhhhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHHHccCCHHHHHHH
Confidence                                 445555666777888888888888764 5677778889999999999875434478899


Q ss_pred             HHHHHHHhhCCh-h---hhHHHhhccCcHHHHHHHhccCCh-HHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHh
Q 017249          214 ATALLEILSSSE-E---GRIAITNSDGGILTLVETVEDGSL-VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLT  288 (375)
Q Consensus       214 a~~~L~~l~~~~-~---~~~~~~~~~g~v~~Lv~lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll  288 (375)
                      |+++|+||+... +   .+..+. ..|+++.|+.+|.+++. .++..|+++|+|++.+.  ..+..+.+.|+++.|+.++
T Consensus       463 Al~aL~nL~~~~~~~~~~~~~v~-~~~~l~~L~~lL~~~~~~~v~~~A~~aL~nLa~~~--~~~~~i~~~g~i~~Lv~lL  539 (780)
T 2z6g_A          463 AICALRHLTSRHQDAEMAQNAVR-LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCP--ANHAPLREQGAIPRLVQLL  539 (780)
T ss_dssp             HHHHHHHTTSSSTTHHHHHHHHH-HTTCHHHHHHTTSTTCCHHHHHHHHHHHHHHHSSH--HHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHhcCchHHHHHHHHH-HcCCHHHHHHHhcCCChHHHHHHHHHHHHHHhcCH--HHHHHHHHCCCHHHHHHHH
Confidence            999999998743 2   244555 68999999999998775 89999999999999864  5567888999999999998


Q ss_pred             hhCC----------------------HHHHHHHHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHH
Q 017249          289 VEGT----------------------FEAQERARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRL  344 (375)
Q Consensus       289 ~~~~----------------------~~~~~~A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~  344 (375)
                      .+++                      +.+++.++.+|.+|+.+...  .+.+.|++++|+..|.   ++.+..+..|..+
T Consensus       540 ~~~~~~~~~~aa~al~nq~~~~~~~~~~v~~~a~~aL~~La~~~~~~~~l~~~~~i~~Lv~lL~---~~~~~v~~~a~~a  616 (780)
T 2z6g_A          540 VRAHQDTQRRTSMGGTQQQFVEGVRMEEIVEACTGALHILARDIHNRIVIRGLNTIPLFVQLLY---SPIENIQRVAAGV  616 (780)
T ss_dssp             HHHHHHHHHTTC------CCSTTCCHHHHHHHHHHHHHHHTTSHHHHHHHHHTCCHHHHHHGGG---CSCHHHHHHHHHH
T ss_pred             HhcchhHHHHHhhccccchhhcccChHHHHHHHHHHHHHHhcChhhHHHHHHCCcHHHHHHHHc---CCCHHHHHHHHHH
Confidence            7644                      44667788899999876533  4668999999998885   4568999999999


Q ss_pred             HHHHH
Q 017249          345 LQDMV  349 (375)
Q Consensus       345 l~~l~  349 (375)
                      |.+|.
T Consensus       617 L~~L~  621 (780)
T 2z6g_A          617 LCELA  621 (780)
T ss_dssp             HHHHH
T ss_pred             HHHHh
Confidence            99885

>4hxt_A De novo protein OR329; structural genomics, PSI-biology, protein structure initiati northeast structural genomics consortium, NESG; 1.95A {Artificial gene}

Probab=99.96  E-value=3.2e-28  Score=215.11  Aligned_cols=240  Identities=26%  Similarity=0.304  Sum_probs=219.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      +.++.|+.+|++++++++..|+++|.+++... ++++..+++.|+++.|+++|++++.+++..++++|.+++.++++++.
T Consensus         2 ~~i~~L~~~L~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~   80 (252)
T 4hxt_A            2 NDVEKLVKLLTSTDSETQKEAARDLAEIASGP-ASAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIK   80 (252)
T ss_dssp             CHHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHH
T ss_pred             CcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC-cHHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCChHHHH
Confidence            56899999999999999999999999999998 77999999999999999999999999999999999999998799999


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-  182 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-  182 (375)
                      .+.+.|+++.|+.+|+++++.++..++++|.+++.. ++.+..+...|+++.|+++++++++.++..++++|.+|+..+ 
T Consensus        81 ~~~~~~~i~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~~l~~~~~~~~~~a~~~L~~l~~~~~  160 (252)
T 4hxt_A           81 AIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPDEAIKAIVDAGGVEVLVKLLTSTDSEVQKEAARALANIASGPD  160 (252)
T ss_dssp             HHHHTTHHHHHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCH
Confidence            999999999999999999999999999999999954 557788888999999999999999999999999999999764 


Q ss_pred             CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      +.+..+.+.|+++.|+.++.++  +..++..++++|.+++. ++..+..+. +.|+++.|+.++.++++.+++.|+++|.
T Consensus       161 ~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~l~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~  237 (252)
T 4hxt_A          161 EAIKAIVDAGGVEVLVKLLTST--DSEVQKEAARALANIASGPTSAIKAIV-DAGGVEVLQKLLTSTDSEVQKEAQRALE  237 (252)
T ss_dssp             HHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHTTSBHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHCcCHHHHHHHHCCC--CHHHHHHHHHHHHHHHcCCHHHHHHHH-HCCCHHHHHHHHCCCcHHHHHHHHHHHH
Confidence            4557788899999999999975  45789999999999998 455566666 6899999999999999999999999999


Q ss_pred             HhcccCc
Q 017249          262 SLCQSCR  268 (375)
Q Consensus       262 ~l~~~~~  268 (375)
                      |++....
T Consensus       238 ~l~~~~~  244 (252)
T 4hxt_A          238 NIKSGGW  244 (252)
T ss_dssp             HHHHTCB
T ss_pred             HHHcCCC
Confidence            9988653

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=1.2e-28  Score=218.37  Aligned_cols=238  Identities=25%  Similarity=0.345  Sum_probs=217.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.++..|++++++++..|++.|.++.... +.++..+++.|+++.|+++|++++++++..|+++|.+++.++++++
T Consensus        11 ~~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~-~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~   89 (252)
T 4db8_A           11 GSELPQMTQQLNSDDMQEQLSATRKFSQILSDG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQI   89 (252)
T ss_dssp             TCSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHH-HHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHH
T ss_pred             cchHHHHHHHHcCCCHHHHHHHHHHHHHHHcCC-CchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHH
Confidence            345789999999999999999999998877765 6889999999999999999999999999999999999999889999


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                      ..+.+.|+++.|+.+|+++++.++..|+++|.+|+.+++.+ ..+...|+++.|+++|++++..++..++++|.+|+..+
T Consensus        90 ~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           90 QAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSC
T ss_pred             HHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCCCHHHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999999999999999988877 77889999999999999999999999999999999764


Q ss_pred             -CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH
Q 017249          183 -ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL  260 (375)
Q Consensus       183 -~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L  260 (375)
                       +....+.+.|+++.|+.++.++  +..++..++++|.+|+. ++..+..+. +.|+++.|+.++.++++.+++.|+++|
T Consensus       170 ~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~~L~~l~~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~A~~~L  246 (252)
T 4db8_A          170 NEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEAL  246 (252)
T ss_dssp             HHHHHHHHHTTCHHHHHHGGGCS--SHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTHHHHHHTTTTCSSSHHHHTHHHHH
T ss_pred             hHHHHHHHHCCCHHHHHHHHCCC--CHHHHHHHHHHHHHHhcCCHHHHHHHH-HCCcHHHHHHHhCCCCHHHHHHHHHHH
Confidence             5667778899999999999876  55789999999999996 556666666 689999999999999999999999999


Q ss_pred             HHhcc
Q 017249          261 LSLCQ  265 (375)
Q Consensus       261 ~~l~~  265 (375)
                      .+++.
T Consensus       247 ~~l~~  251 (252)
T 4db8_A          247 EKLQS  251 (252)
T ss_dssp             HTTC-
T ss_pred             HHHhc
Confidence            99975

>4db8_A Armadillo-repeat protein; solenoid repeat, de novo protein; 2.50A {Synthetic construct}

Probab=99.96  E-value=2.1e-28  Score=216.81  Aligned_cols=238  Identities=23%  Similarity=0.279  Sum_probs=214.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~  146 (375)
                      ...+.++++|.+++++++..|+++|.++...+++++..+.+.|+++.|+.+|.++++.++..|+++|.+++.. ++++..
T Consensus        12 ~~~~~~~~~L~s~~~~~~~~a~~~L~~~l~~~~~~~~~~~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~   91 (252)
T 4db8_A           12 SELPQMTQQLNSDDMQEQLSATRKFSQILSDGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQA   91 (252)
T ss_dssp             CSHHHHHHHHHSSCSSHHHHHHHHHHHHHHHHHHHHHHHHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHH
T ss_pred             chHHHHHHHHcCCCHHHHHHHHHHHHHHHcCCCchHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCHHHHHH
Confidence            4688999999999999999999999876665778899999999999999999999999999999999999985 557888


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc-hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      +...|+++.|+.+|+++++.++..|+++|.+|+..++.+ ..+.+.|+++.|++++.++  +..++..++++|++|+..+
T Consensus        92 i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~lL~~~--~~~v~~~a~~~L~~l~~~~  169 (252)
T 4db8_A           92 VIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIASGG  169 (252)
T ss_dssp             HHHTTHHHHHHHGGGCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSC
T ss_pred             HHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHhhcCCchHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHHcCC
Confidence            889999999999999999999999999999999988777 7888999999999999876  5578899999999999854


Q ss_pred             -hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHH
Q 017249          226 -EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD  304 (375)
Q Consensus       226 -~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~  304 (375)
                       ..+..++ +.|+++.|+.+|.++++.++..|+++|.+++..+ ++.+..+.+.|+++.|+.++.++++.+++.|+++|.
T Consensus       170 ~~~~~~~~-~~~~i~~L~~ll~~~~~~v~~~a~~~L~~l~~~~-~~~~~~~~~~g~i~~L~~ll~~~~~~v~~~A~~~L~  247 (252)
T 4db8_A          170 NEQIQAVI-DAGALPALVQLLSSPNEQILQEALWALSNIASGG-NEQKQAVKEAGALEKLEQLQSHENEKIQKEAQEALE  247 (252)
T ss_dssp             HHHHHHHH-HTTCHHHHHHGGGCSSHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTHHHHHHTTTTCSSSHHHHTHHHHHH
T ss_pred             hHHHHHHH-HCCCHHHHHHHHCCCCHHHHHHHHHHHHHHhcCC-HHHHHHHHHCCcHHHHHHHhCCCCHHHHHHHHHHHH
Confidence             5555555 6899999999999999999999999999999776 577888899999999999999999999999999999


Q ss_pred             HhhcC
Q 017249          305 LLRDT  309 (375)
Q Consensus       305 ~l~~~  309 (375)
                      +++.+
T Consensus       248 ~l~~~  252 (252)
T 4db8_A          248 KLQSH  252 (252)
T ss_dssp             TTC--
T ss_pred             HHhcC
Confidence            99753

>2z6g_A B-catenin; FULL-length, beta-catenin, cell adhesion; 3.40A {Danio rerio}

Probab=99.96  E-value=3.5e-27  Score=240.84  Aligned_cols=322  Identities=20%  Similarity=0.225  Sum_probs=276.5

Q ss_pred             HHHHh-hHhHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHh
Q 017249           18 AWNQR-KQALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNL   95 (375)
Q Consensus        18 ~~~~~-~~~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L   95 (375)
                      +..+. ..+.++.|+..|++ .+++++..|+.+|.+++...  +++..+.+.|+++.|+++|+++++.++..|+++|.+|
T Consensus       184 ~~~i~~~~~~i~~Lv~~L~~~~d~~vr~~Aa~aL~~Ls~~~--~~~~~i~~~g~I~~Lv~lL~~~~~~v~~~A~~aL~nL  261 (780)
T 2z6g_A          184 RHAIMRSPQMVSAIVRTMQNTNDVETARCTSGTLHNLSHHR--EGLLAIFKSGGIPALVNMLGSPVDSVLFHAITTLHNL  261 (780)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             HHHHHhccChHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            33444 45899999999985 49999999999999988876  7788899999999999999999999999999999999


Q ss_pred             hccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhccCCH-HHHHHHHH
Q 017249           96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILHSGSV-QGRVDAVT  173 (375)
Q Consensus        96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~  173 (375)
                      +.+.+..+..+.+.|+++.|+.+|.+++..++..++.+|.+++.. ++++..+...++++.|+.+|++.+. ..+..++.
T Consensus       262 a~~~~~~~~~v~~~g~v~~Lv~lL~~~~~~v~~~a~~aL~~La~~~~e~~~~i~~~~~i~~Lv~lL~~~~~~~~~~~a~~  341 (780)
T 2z6g_A          262 LLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSR  341 (780)
T ss_dssp             HHHSTTHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHTTTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             hCCChhhHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHHHHHHhcCChHHHHHHHHcCCHHHHHHHHhcCCHHHHHHHHHH
Confidence            998788899999999999999999999999999999999999974 4577788888999999999998765 45678899


Q ss_pred             HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249          174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST  253 (375)
Q Consensus       174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~  253 (375)
                      +|++|+..+.++..+++.|+++.|+.++.+.  +..++..++++|.+|+......  .. ..++++.|+.+|.+.++.++
T Consensus       342 aL~~Ls~~~~~~~~i~~~g~l~~Ll~lL~~~--~~~~~~~a~~~L~~L~~~~~~~--~~-~~~~i~~Lv~lL~~~d~~vr  416 (780)
T 2z6g_A          342 VLKVLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQ--EG-MEGLLGTLVQLLGSDDINVV  416 (780)
T ss_dssp             HHHHHHTSTTHHHHHHHTTHHHHHGGGTTCS--CHHHHHHHHHHHHHHHTTCTTC--SC-CHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhcChHHHHHHHHhchHHHHHHHHcCC--chHHHHHHHHHHHHHhccchhh--hh-hhhHHHHHHHHHcCCCHHHH
Confidence            9999998888899999999999999999876  4467888999999999765332  11 34789999999999999999


Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CC-HHHHHHHHHHHHHhhcCChh------hhhhhhhHHHHHH
Q 017249          254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GT-FEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVY  325 (375)
Q Consensus       254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~-~~~~~~A~~~L~~l~~~~~~------~~~~~g~~~~l~~  325 (375)
                      ..|+++|.+|+.+. ++.+..+.+.|+++.|+.++.+ ++ +.+++.|+++|.+|+...++      .+...|+++.|+.
T Consensus       417 ~~A~~aL~~L~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~~~v~~~Al~aL~nL~~~~~~~~~~~~~v~~~~~l~~L~~  495 (780)
T 2z6g_A          417 TCAAGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQDAEMAQNAVRLHYGLPVVVK  495 (780)
T ss_dssp             HHHHHHHHHHTSSC-HHHHHHHHTTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhCC-HHHHHHHHHCCCHHHHHHHHHccCCHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHcCCHHHHHH
Confidence            99999999999986 5778888999999999998876 33 49999999999999875422      5667889999998


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHH
Q 017249          326 DIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       326 ~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      .|..  ...+..+..|..+|.+|.
T Consensus       496 lL~~--~~~~~v~~~A~~aL~nLa  517 (780)
T 2z6g_A          496 LLHP--PSHWPLIKATVGLIRNLA  517 (780)
T ss_dssp             TTST--TCCHHHHHHHHHHHHHHH
T ss_pred             HhcC--CChHHHHHHHHHHHHHHh
Confidence            8762  233588899999999986

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.94  E-value=5.7e-26  Score=196.34  Aligned_cols=198  Identities=17%  Similarity=0.178  Sum_probs=176.5

Q ss_pred             hHHHHHHHHhcCCCH--HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           25 ALIEELSDKLINGDL--ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~--~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      -.++.+|++|+++++  +++..|++.|.+++..+ +.++..+++.|+||+|+++|+++++++++.|+++|+||+.+++++
T Consensus         8 ~~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~-~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~n   86 (233)
T 3tt9_A            8 MTLERAVSMLEADHMLPSRISAAATFIQHECFQK-SEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDN   86 (233)
T ss_dssp             CCHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHC-HHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHH
T ss_pred             ccHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCC-cHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHH
Confidence            468999999999888  88999999999999988 789999999999999999999999999999999999999988999


Q ss_pred             HHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhc----------------cCCH
Q 017249          103 KVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILH----------------SGSV  165 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~----------------~~~~  165 (375)
                      |..+.+.|++|+|+++|. +++.++++.++.+||||+..++++..+... ++++|++++.                ..+.
T Consensus        87 k~~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~  165 (233)
T 3tt9_A           87 KLEVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDF  165 (233)
T ss_dssp             HHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCH
T ss_pred             HHHHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchH
Confidence            999999999999999998 578999999999999999999999888864 6999998763                1256


Q ss_pred             HHHHHHHHHHHHhccC-CCCchhhhhc-CCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCC
Q 017249          166 QGRVDAVTALHYLSTC-KENSSPILDA-TAVPPLINLLKDC----KKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       166 ~~~~~a~~~L~~L~~~-~~~~~~i~~~-g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~  224 (375)
                      .++++|.++|+||+.. ++++..+.+. |+++.|+.+++.+    ..+.+.+++|..+|+||+..
T Consensus       166 ~v~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          166 DIFYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            8999999999999975 4888888875 6789999999864    23457889999999999974

>3tt9_A Plakophilin-2; cell adhesion; 1.55A {Homo sapiens}

Probab=99.93  E-value=6.4e-26  Score=196.04  Aligned_cols=197  Identities=21%  Similarity=0.237  Sum_probs=175.3

Q ss_pred             ChHHHHHhhCCCCH--HHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChh
Q 017249           69 VVQPLVLMLVSPNL--DAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKP  145 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~--~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~  145 (375)
                      .++.||++|.++++  +++..|+++|.+++.+++++|..+++.|+||+|+++|+++++++++.|+++|.||+.. ++++.
T Consensus         9 ~i~~lV~lL~s~~~~~~~q~~Aa~~l~~L~~~~~~~r~~I~~~G~Ip~LV~lL~s~~~~vq~~Aa~aL~nLa~~~~~nk~   88 (233)
T 3tt9_A            9 TLERAVSMLEADHMLPSRISAAATFIQHECFQKSEARKRVNQLRGILKLLQLLKVQNEDVQRAVCGALRNLVFEDNDNKL   88 (233)
T ss_dssp             CHHHHHHTCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHhCCCCchHHHHHHHHHHHHHHHcCCcHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHH
Confidence            58999999999887  8999999999999988899999999999999999999999999999999999999985 56899


Q ss_pred             HHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhh---hcc-----------cchHH
Q 017249          146 AIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK---DCK-----------KYSKF  210 (375)
Q Consensus       146 ~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~---~~~-----------~~~~~  210 (375)
                      .+.+.|++++|+++|+ +++..+++.|+.+|+||+..++++..+++. +++.|+.++.   ++.           .+..+
T Consensus        89 ~I~~~GaI~~Lv~lL~~~~~~~~~e~a~~aL~nLS~~~~~k~~i~~~-~i~~Lv~ll~~p~sG~~~~~~~~~~~~~~~~v  167 (233)
T 3tt9_A           89 EVAELNGVPRLLQVLKQTRDLETKKQITGLLWNLSSNDKLKNLMITE-ALLTLTENIIIPFSGWPEGDYPKANGLLDFDI  167 (233)
T ss_dssp             HHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTSGGGHHHHHHH-HHHHHCCCCCHHHHCCCGGGCCCCCTTCCHHH
T ss_pred             HHHHcCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcChhhHHHHHhc-cHHHHHHHHhccccCCcccccccccccchHHH
Confidence            9999999999999998 478999999999999999999999988874 6999998763   111           24578


Q ss_pred             HHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhcc------CChHHHHHHHHHHHHhccc
Q 017249          211 AEKATALLEILSS-SEEGRIAITNSDGGILTLVETVED------GSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       211 ~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~------~~~~~~~~a~~~L~~l~~~  266 (375)
                      +++|.++|+||+. ++++|+.+....|+|+.|+.+++.      .+.+.++.|+.+|+||+..
T Consensus       168 ~~na~~~L~nLss~~~~~R~~~r~~~Gli~~Lv~~l~~~~~~~~~~~k~~En~v~~L~nLs~~  230 (233)
T 3tt9_A          168 FYNVTGCLRNMSSAGADGRKAMRRCDGLIDSLVHYVRGTIADYQPDDKATENCVCILHNLSYQ  230 (233)
T ss_dssp             HHHHHHHHHHHTTSCHHHHHHHHTSTTHHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHCCCcHHHHHHHHHhhhhcccchhHHHHHHHHHHHHHHhh
Confidence            9999999999987 679999998667889999999974      2568999999999999875

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.93  E-value=3e-24  Score=211.75  Aligned_cols=322  Identities=15%  Similarity=0.111  Sum_probs=259.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .+..+.++++|.+++.+.+..|++.|..++.+.  +.|+.+++. |+++.|++++++ .+..+.-.++.+|.||+...+.
T Consensus       333 ~~La~~~~~~L~~~~~~~~~~AvEgLaYLSl~~--~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~  410 (778)
T 3opb_A          333 KQLSEIFINAISRRIVPKVEMSVEALAYLSLKA--SVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEE  410 (778)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHHTTSS--HHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCC
T ss_pred             HHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCH--HHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcc
Confidence            346778888888877777999999999999988  788888776 779999999995 6778899999999999974321


Q ss_pred             --------------------------------------hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC
Q 017249          102 --------------------------------------NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus       102 --------------------------------------~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                                                            ++..+.+.|++|.|+.++++.++.+++.++++|.+|+.++++
T Consensus       411 ~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~d~~~  490 (778)
T 3opb_A          411 XXXXXXXXXXXXXXXXXXXPAADKVGAEKAAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITRSKNF  490 (778)
T ss_dssp             CCCCCC------------------CCTHHHHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHTSGGG
T ss_pred             cchhhhhhhhhhhhccccCcccCcccccccchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcCCHHH
Confidence                                                  456677899999999999999999999999999999999899


Q ss_pred             hhHHHhcCChHHHHHHhccCCHH---HHHHHHHHHHHhccCCCCchhhh--h-cCCcHHHHHHhhhcccc----------
Q 017249          144 KPAIAASGAAPLLVQILHSGSVQ---GRVDAVTALHYLSTCKENSSPIL--D-ATAVPPLINLLKDCKKY----------  207 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~~~~---~~~~a~~~L~~L~~~~~~~~~i~--~-~g~i~~Lv~ll~~~~~~----------  207 (375)
                      +..++..|++++|+++|.+++..   .+..|+.+|.+|+...+....+.  . .|++++|+.+|..+...          
T Consensus       491 R~~lvqqGal~~LL~lL~s~~~~~~~~k~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~  570 (778)
T 3opb_A          491 IPQLAQQGAVKIILEYLANKQDIGEPIRILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQ  570 (778)
T ss_dssp             HHHHHHTTHHHHHHHHTTCC---CCHHHHHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCC
T ss_pred             HHHHHHCCCHHHHHHHHhcCCCcchHHHHHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCccccccccccc
Confidence            99999999999999999988654   79999999999985543222221  1 38999999999832111          


Q ss_pred             -h-HHHHHHHHHHHHhhCCh-----hhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHH-HHHHHc-
Q 017249          208 -S-KFAEKATALLEILSSSE-----EGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYR-QLILKE-  278 (375)
Q Consensus       208 -~-~~~~~a~~~L~~l~~~~-----~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~-~~l~~~-  278 (375)
                       . .-+..|+.+|.||+..+     +.+..++.+.|+++.|..+|.+++..++..|+++++||+.+.  +.+ +.+... 
T Consensus       571 ~~~l~~feAL~ALTNLAs~~~n~~E~~r~~Ii~~~ga~~~L~~LL~s~n~~VrrAA~elI~NL~~~~--e~i~~k~~~~~  648 (778)
T 3opb_A          571 IKLTDNYEALLALTNLASSETSDGEEVCKHIVSTKVYWSTIENLMLDENVPLQRSTLELISNMMSHP--LTIAAKFFNLE  648 (778)
T ss_dssp             CCHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHSHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHTSG--GGTGGGTSCCS
T ss_pred             ccHHHHHHHHHHHHHHhcCCcccchHHHHHHHHhcCHHHHHHHHHhCCCHHHHHHHHHHHHHHhCCc--HHHHHHHHhhc
Confidence             1 12457999999999876     347778843489999999999999999999999999999864  333 234322 


Q ss_pred             -----CChHHHHHHhhhCCHHHHHHHHHHHHHhhc-CCh--hhhhhh-hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          279 -----GAIPGLLRLTVEGTFEAQERARTLLDLLRD-TPQ--EKRLSS-SVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       279 -----g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~-~~~--~~~~~~-g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                           +.++.|+.++.++++.+|+.|+++|.+++. ++.  ..+++. ++++.++..+... ...+..+..+..++.+|.
T Consensus       649 ~~~~~~rL~lLV~Ll~s~D~~~r~AAagALAnLts~~~~ia~~ll~~~~gi~~Ll~lL~~~-~~~~~l~~R~~~~l~NL~  727 (778)
T 3opb_A          649 NPQSLRNFNILVKLLQLSDVESQRAVAAIFANIATTIPLIAKELLTKKELIENAIQVFADQ-IDDIELRQRLLMLFFGLF  727 (778)
T ss_dssp             SHHHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCHHHHHHHTTCHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHHH
T ss_pred             CchhhccHHHHHHHHcCCCHHHHHHHHHHHHHhcCCChHHHHHHHHccccHHHHHHHHhcc-CCCHHHHHHHHHHHHHHH
Confidence                 248899999999999999999999999964 442  355554 7999999888732 245999999999999998


Q ss_pred             H
Q 017249          350 Q  350 (375)
Q Consensus       350 ~  350 (375)
                      .
T Consensus       728 ~  728 (778)
T 3opb_A          728 E  728 (778)
T ss_dssp             T
T ss_pred             H
Confidence            5

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.93  E-value=2.1e-24  Score=185.62  Aligned_cols=201  Identities=26%  Similarity=0.321  Sum_probs=180.9

Q ss_pred             HHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249           20 NQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~   99 (375)
                      .....+..+.|+.+|++++++++..|+++|.+++..+ ++.+..+.+.|+++.|+++|++++++++..|+++|.+++.++
T Consensus         7 ~~~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~-~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~   85 (210)
T 4db6_A            7 HHHHGSELPQMVQQLNSPDQQELQSALRKLSQIASGG-NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGG   85 (210)
T ss_dssp             ------CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSC
T ss_pred             cccccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCC
Confidence            3455677899999999999999999999999999887 789999999999999999999999999999999999999888


Q ss_pred             hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          100 ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       100 ~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      +.++..+.+.|+++.|+.+|.++++.++..|+++|+|++...+ .+..+.+.|+++.|+++|++++..++..|+++|.+|
T Consensus        86 ~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~~~~v~~~a~~aL~~l  165 (210)
T 4db6_A           86 NEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNI  165 (210)
T ss_dssp             HHHHHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999997654 456677899999999999999999999999999999


Q ss_pred             ccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          179 STC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       179 ~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                      +.. ++.+..+.+.|+++.|++++.++  +..+++.|+++|.+|+.
T Consensus       166 ~~~~~~~~~~~~~~g~i~~L~~ll~~~--~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          166 ASGGNEQKQAVKEAGALEKLEQLQSHE--NEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             HTSCHHHHHHHHHTTHHHHHHHGGGCS--CHHHHHHHHHHHHHHCC
T ss_pred             HcCCcHHHHHHHHCCCHHHHHHHHhCC--CHHHHHHHHHHHHHHhc
Confidence            977 56778888999999999999975  55789999999999975

>3opb_A SWI5-dependent HO expression protein 4; heat and arm fold, myosin folding and function, myosin bindi protein, protein binding; 2.90A {Saccharomyces cerevisiae}

Probab=99.92  E-value=6e-24  Score=209.62  Aligned_cols=320  Identities=13%  Similarity=0.101  Sum_probs=253.9

Q ss_pred             ccchhhhHHHHHhhH-hHHHHHHHHhcC-CCHHHHHHHHHHHHHHHhhCCh-----------------------------
Q 017249           10 AATDQEEEAWNQRKQ-ALIEELSDKLIN-GDLETKIEAARDIRKVVKKSSL-----------------------------   58 (375)
Q Consensus        10 ~~~~~~~~~~~~~~~-~~l~~Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~-----------------------------   58 (375)
                      |.+.+.+.+..++.. +.++.|+.++++ ++.....-++.+|.|++...+.                             
T Consensus       360 YLSl~~~VKe~L~~d~~~L~~Lv~llk~~~d~s~~Ygal~IL~NLt~~~~~~~~e~~~l~~Lk~~A~~~~p~~~~~d~~~  439 (778)
T 3opb_A          360 YLSLKASVKIMIRSNESFTEILLTMIKSQKMTHCLYGLLVIMANLSTLPEEXXXXXXXXXXXXXXXXXXXPAADKVGAEK  439 (778)
T ss_dssp             HHTTSSHHHHHHHHCHHHHHHHHHHHTTTCCTTHHHHHHHHHHHTTCCCCCCCCCCC------------------CCTHH
T ss_pred             HHhCCHHHHHHHHhCHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCCCcccchhhhhhhhhhhhccccCcccCcccccc
Confidence            445667777777744 459999999984 7788899999999999874410                             


Q ss_pred             -------h-hHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChH---HH
Q 017249           59 -------K-TRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT---LR  127 (375)
Q Consensus        59 -------~-~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~---~~  127 (375)
                             + ++..+.+.|+++.|+.+++++++.+++.++++|.+|+. ++++|..+++.|++++|+.+|.+....   .+
T Consensus       440 ~~~~~v~~~~~~~l~eaGvIp~Lv~Ll~S~s~~~re~A~~aL~nLS~-d~~~R~~lvqqGal~~LL~lL~s~~~~~~~~k  518 (778)
T 3opb_A          440 AAKEDILLFNEKYILRTELISFLKREMHNLSPNCKQQVVRIIYNITR-SKNFIPQLAQQGAVKIILEYLANKQDIGEPIR  518 (778)
T ss_dssp             HHHHHHHHHHHHHTTTTTHHHHHHHHGGGSCHHHHHHHHHHHHHHHT-SGGGHHHHHHTTHHHHHHHHTTCC---CCHHH
T ss_pred             cchHHHHHHHHHHHHHCcCHHHHHHHHcCCCHHHHHHHHHHHHHHcC-CHHHHHHHHHCCCHHHHHHHHhcCCCcchHHH
Confidence                   0 45667788999999999999999999999999999998 689999999999999999999888544   89


Q ss_pred             HHHHHHHHHhhccCCChhHHH---hcCChHHHHHHhcc-CCH-------------HHHHHHHHHHHHhccCCC-----Cc
Q 017249          128 ELAAAAILTLSAAAPNKPAIA---ASGAAPLLVQILHS-GSV-------------QGRVDAVTALHYLSTCKE-----NS  185 (375)
Q Consensus       128 ~~a~~~L~~Ls~~~~~~~~i~---~~~~l~~L~~lL~~-~~~-------------~~~~~a~~~L~~L~~~~~-----~~  185 (375)
                      ..|+.+|.++....+....+.   ..+++++|+.+|.. +..             .-+..|+.+|.||+..++     .+
T Consensus       519 ~~AA~ALArLlis~np~~~f~~~~~~~aI~pLv~LL~~~~~~~~~~l~~~~~~~~l~~feAL~ALTNLAs~~~n~~E~~r  598 (778)
T 3opb_A          519 ILGCRALTRMLIFTNPGLIFKKYSALNAIPFLFELLPRSTPVDDNPLHNDEQIKLTDNYEALLALTNLASSETSDGEEVC  598 (778)
T ss_dssp             HHHHHHHHHHHHTSCHHHHSSSSCSTTHHHHHHHTSCCSSSCSSCC---CCCCCHHHHHHHHHHHHHHHHCCSHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHcCCCccccchHHHHHHcCCCCCcccccccccccccHHHHHHHHHHHHHHhcCCcccchHHH
Confidence            999999999997665444432   13899999999983 211             127799999999998863     36


Q ss_pred             hhhhhc-CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhh-HHHhhcc-----CcHHHHHHHhccCChHHHHHHHH
Q 017249          186 SPILDA-TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGR-IAITNSD-----GGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       186 ~~i~~~-g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~-~~~~~~~-----g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      ..++.. |+++.|..++.++  +..++.+|+++++||+.+++.+ ..+....     +.++.|+.+++.++..+|..|+|
T Consensus       599 ~~Ii~~~ga~~~L~~LL~s~--n~~VrrAA~elI~NL~~~~e~i~~k~~~~~~~~~~~rL~lLV~Ll~s~D~~~r~AAag  676 (778)
T 3opb_A          599 KHIVSTKVYWSTIENLMLDE--NVPLQRSTLELISNMMSHPLTIAAKFFNLENPQSLRNFNILVKLLQLSDVESQRAVAA  676 (778)
T ss_dssp             HHHHHSHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHTSGGGTGGGTSCCSSHHHHHHHHHHHHGGGCSCHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHhCC--CHHHHHHHHHHHHHHhCCcHHHHHHHHhhcCchhhccHHHHHHHHcCCCHHHHHHHHH
Confidence            778885 9999999999876  4578999999999999999875 3444211     23788999999999999999999


Q ss_pred             HHHHhcccCcHHHHHHHHHc-CChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCC----hh----hhh-hhhhHHHHHHH
Q 017249          259 ALLSLCQSCRDKYRQLILKE-GAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP----QE----KRL-SSSVLEKIVYD  326 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~-g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~----~~----~~~-~~g~~~~l~~~  326 (375)
                      +|++++... +...+.+++. ++++.++.++.+  .++.++..++.++.|+.+..    .+    ... .......+...
T Consensus       677 ALAnLts~~-~~ia~~ll~~~~gi~~Ll~lL~~~~~~~~l~~R~~~~l~NL~~~~~~~~~~~~~~~~~~~~~l~~~l~~~  755 (778)
T 3opb_A          677 IFANIATTI-PLIAKELLTKKELIENAIQVFADQIDDIELRQRLLMLFFGLFEVIPDNGTNEVYPLLQENQKLKDALNMS  755 (778)
T ss_dssp             HHHHHHHHC-HHHHHHHTTCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTCCSTTTTSCCHHHHSCHHHHHHHHHH
T ss_pred             HHHHhcCCC-hHHHHHHHHccccHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhhccCCChHHHHHHhcChHHHHHHHHH
Confidence            999997665 4667777775 899999999998  89999999999999999732    21    222 34466677776


Q ss_pred             HhhcCCC
Q 017249          327 IAARVDG  333 (375)
Q Consensus       327 l~~~~~g  333 (375)
                      |.+..++
T Consensus       756 lk~~~~~  762 (778)
T 3opb_A          756 LKRGDSG  762 (778)
T ss_dssp             HSSSSSC
T ss_pred             HhCCCch
Confidence            6654433

>4db6_A Armadillo repeat protein; solenoid repeat, armadillo repeat motif, de novo protein; 1.80A {Synthetic construct} PDB: 4db9_A 4dba_A

Probab=99.92  E-value=6.3e-24  Score=182.67  Aligned_cols=198  Identities=26%  Similarity=0.310  Sum_probs=177.9

Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CC
Q 017249           65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PN  143 (375)
Q Consensus        65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~  143 (375)
                      ...|+.+.|+.+|++++++++..|+++|.+++.++++.+..+.+.|+++.|+.+|+++++.++..|+++|.+++... +.
T Consensus         9 ~~~~~~~~l~~LL~s~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~   88 (210)
T 4db6_A            9 HHGSELPQMVQQLNSPDQQELQSALRKLSQIASGGNEQIQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQ   88 (210)
T ss_dssp             ----CHHHHHHHTTCSCHHHHHHHHHHHHHHHTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHH
T ss_pred             cccchhHHHHHHhcCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCcHH
Confidence            34578999999999999999999999999999878999999999999999999999999999999999999999654 56


Q ss_pred             hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          144 KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       144 ~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      +..+.+.|+++.|+.+|+++++.++..|+++|.+|+..+ +.+..+.+.|+++.|++++.++  +..++..++++|.|++
T Consensus        89 ~~~i~~~g~i~~L~~lL~~~~~~v~~~a~~~L~~l~~~~~~~~~~~~~~~~i~~L~~ll~~~--~~~v~~~a~~aL~~l~  166 (210)
T 4db6_A           89 IQAVIDAGALPALVQLLSSPNEQILQEALWALSNIASGGNEQIQAVIDAGALPALVQLLSSP--NEQILQEALWALSNIA  166 (210)
T ss_dssp             HHHHHHTTCHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCS--CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHcCCcHHHHHHHHHHHHHHHcCCHHHHHHHHHcCcHHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence            788889999999999999999999999999999999654 5567788899999999999976  4578999999999999


Q ss_pred             CC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          223 SS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       223 ~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      .. +..+..+. +.|+++.|+.++.++++.+++.|+++|.+++.
T Consensus       167 ~~~~~~~~~~~-~~g~i~~L~~ll~~~~~~v~~~a~~aL~~l~~  209 (210)
T 4db6_A          167 SGGNEQKQAVK-EAGALEKLEQLQSHENEKIQKEAQEALEKLQS  209 (210)
T ss_dssp             TSCHHHHHHHH-HTTHHHHHHHGGGCSCHHHHHHHHHHHHHHCC
T ss_pred             cCCcHHHHHHH-HCCCHHHHHHHHhCCCHHHHHHHHHHHHHHhc
Confidence            87 66676666 68999999999999999999999999999975

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.89  E-value=7.9e-22  Score=177.61  Aligned_cols=239  Identities=15%  Similarity=0.104  Sum_probs=192.1

Q ss_pred             hHhHHHHHHHHhcCC------------CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHH
Q 017249           23 KQALIEELSDKLING------------DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-MLVSPNLDAIESSL   89 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~------------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L~~~~~~~~~~a~   89 (375)
                      ....++..+..|.++            +.+.+..|+..|.+++...  ++...+.+.|++++|+. +|.+++++++..|+
T Consensus        26 ~~~~mk~~l~vl~~~~~~~~~~~~~~~~~e~k~~Al~~L~~lv~~~--dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa  103 (296)
T 1xqr_A           26 EVEQMKSCLRVLSQPMPPTAGEAEQAADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA  103 (296)
T ss_dssp             HHHHHHHHHHHHHSCCCSSCCHHHHHHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCcccccccccCCCHHHHHHHHHHHHHHHhCh--hhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHH
Confidence            355677788888764            2367888999999999876  68888899999999999 99999999999999


Q ss_pred             HHHHHhhccChhhHHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHH
Q 017249           90 LALLNLAVRNERNKVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQG  167 (375)
Q Consensus        90 ~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~  167 (375)
                      ++|++++.+++.++..+++.|++|+|+.+|++. ++.+++.|+++|.|++.+.+ ....+...|+++.|+.+|++++..+
T Consensus       104 ~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL~~~~~~~v~~~A~~ALsnl~~~~~~~~~~~~~~ggi~~L~~lL~~~d~~v  183 (296)
T 1xqr_A          104 QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKL  183 (296)
T ss_dssp             HHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHHcCCcHHHHHHHHCCCHHHHHHHHcCCCHHH
Confidence            999999999999999999999999999999864 88999999999999997654 4667778899999999999999999


Q ss_pred             HHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHH----
Q 017249          168 RVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTL----  241 (375)
Q Consensus       168 ~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~L----  241 (375)
                      +..|+|+|.+|+.. ++.+..+++.|+++.|+.+|.+.  +..+++.++++|.+|+.. +............+..+    
T Consensus       184 ~~~A~~aLs~L~~~~~~~~~~vv~~g~i~~Lv~LL~~~--d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~  261 (296)
T 1xqr_A          184 KVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTE--HSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHR  261 (296)
T ss_dssp             HHHHHHHHHHHHHHCGGGHHHHHHTTHHHHHHHHHTSC--CSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCChHHHHHHHHcCCHHHHHHHHcCC--ChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHH
Confidence            99999999999865 57788899999999999999986  346889999999999976 33333222111112222    


Q ss_pred             HHHhc-cC-ChHHHHHHHHHHHHhcc
Q 017249          242 VETVE-DG-SLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       242 v~lL~-~~-~~~~~~~a~~~L~~l~~  265 (375)
                      +.-|. +. .....+.|..++.++..
T Consensus       262 ~~~lq~~e~~~e~~~~~~~il~~~f~  287 (296)
T 1xqr_A          262 CQLLQQHEEYQEELEFCEKLLQTCFS  287 (296)
T ss_dssp             HHHHTTCGGGHHHHHHHHHHHHHHCC
T ss_pred             HHHccchHHHHHHHHHHHHHHHHHcC
Confidence            22233 22 34566677777766553

>1xqr_A HSPBP1 protein; armadillo repeat, superhelical twist, chaperone; 2.10A {Homo sapiens} SCOP: a.118.1.21 PDB: 1xqs_A*

Probab=99.88  E-value=2.3e-21  Score=174.61  Aligned_cols=222  Identities=17%  Similarity=0.113  Sum_probs=182.2

Q ss_pred             hHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHh
Q 017249          124 GTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLL  201 (375)
Q Consensus       124 ~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll  201 (375)
                      .+-+..|+..|.+++.+.++...+...|++++|+. +|.++++.++..|+|+|.+++.++ ..+..+++.|++++|+.+|
T Consensus        54 ~e~k~~Al~~L~~lv~~~dna~~~~~~G~l~~Lv~~lL~s~~~~vr~~Aa~~Lg~ia~~n~~~~~~vv~~g~l~~Ll~LL  133 (296)
T 1xqr_A           54 QQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLL  133 (296)
T ss_dssp             HHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhChhhHHHHHHcCCHHHHHHHHHcCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHCCCHHHHHHHH
Confidence            45678899999999988778888888999999999 999999999999999999999764 5677888999999999999


Q ss_pred             hhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCC
Q 017249          202 KDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGA  280 (375)
Q Consensus       202 ~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~  280 (375)
                      .++. +..+++.|+++|+|++.+ +.....+. ..|+++.|+.+|.+++..++..|+|+|.+++.++ ++.++.+++.|+
T Consensus       134 ~~~~-~~~v~~~A~~ALsnl~~~~~~~~~~~~-~~ggi~~L~~lL~~~d~~v~~~A~~aLs~L~~~~-~~~~~~vv~~g~  210 (296)
T 1xqr_A          134 DRDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCSMGM  210 (296)
T ss_dssp             HHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHTTH
T ss_pred             ccCC-CHHHHHHHHHHHHHHHcCCcHHHHHHH-HCCCHHHHHHHHcCCCHHHHHHHHHHHHHHHhCC-hHHHHHHHHcCC
Confidence            8743 457889999999999975 55555666 6899999999999999999999999999999886 578899999999


Q ss_pred             hHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhh--h------hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          281 IPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLS--S------SVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       281 v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~--~------g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ++.|+.++.++++.+++.|+.+|.+|....+.....  .      ..++.-...|+.+.. .....++|..+++.+.
T Consensus       211 i~~Lv~LL~~~d~~v~~~al~aL~~l~~~~~~~~~~~~~~~~~l~~lL~~~~~~lq~~e~-~~e~~~~~~~il~~~f  286 (296)
T 1xqr_A          211 VQQLVALVRTEHSPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLLQQHEE-YQEELEFCEKLLQTCF  286 (296)
T ss_dssp             HHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHHHHHHHHCGGGCHHHHHHHHHHHHTTCGG-GHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHcCCChhHHHHHHHHHHHHHhCChhHHHHHhccHHHHHHHHHHHHHHccchHH-HHHHHHHHHHHHHHHc
Confidence            999999999999999999999999999886432211  1      123333334432221 2566677888877776

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.73  E-value=1.8e-15  Score=145.82  Aligned_cols=326  Identities=13%  Similarity=0.103  Sum_probs=246.3

Q ss_pred             hhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcc
Q 017249           22 RKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVR   98 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~   98 (375)
                      ...+.++.|+..++ +.-.+.++.|+..|..+++.. +   . .+..++++.|+..|+..  |.++...++.+|.++...
T Consensus        18 s~~etI~~L~~Rl~~~tl~eDRR~Av~~Lk~~sk~y-~---~-~Vg~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~   92 (651)
T 3grl_A           18 TEAETIQKLCDRVASSTLLDDRRNAVRALKSLSKKY-R---L-EVGIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISN   92 (651)
T ss_dssp             CHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTTTT-T---T-HHHHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCC
T ss_pred             ChhhHHHHHHHHHhhccchhHHHHHHHHHHHHHHHh-H---H-HhhhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCC
Confidence            45778999999997 567899999999999998665 2   2 23467799999999764  789999999999887654


Q ss_pred             Chh-----------------hHHHHH-HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHH-hcCChHHHH
Q 017249           99 NER-----------------NKVKIA-TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIA-ASGAAPLLV  157 (375)
Q Consensus        99 ~~~-----------------~r~~i~-~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~-~~~~l~~L~  157 (375)
                      ++.                 +.+.+. +.+.++.|+.+|++.+..+|..++.+|..|+.+.+  .+..+. .+++++.|+
T Consensus        93 ~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv  172 (651)
T 3grl_A           93 DEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFHVRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLM  172 (651)
T ss_dssp             C--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHH
T ss_pred             CCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHHHHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHH
Confidence            332                 122343 36889999999999999999999999999998765  466666 669999999


Q ss_pred             HHhccCCHHHHHHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhccc--chHHHHHHHHHHHHhhCC-hhhhHHHhh
Q 017249          158 QILHSGSVQGRVDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCKK--YSKFAEKATALLEILSSS-EEGRIAITN  233 (375)
Q Consensus       158 ~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~~--~~~~~~~a~~~L~~l~~~-~~~~~~~~~  233 (375)
                      .+|++....++..++.+|.+|+.++...+.++. .|+++.|++++.....  ...+..-|+.+|.||... +.|+..+. 
T Consensus       173 ~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~Fr-  251 (651)
T 3grl_A          173 DLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDIITEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFK-  251 (651)
T ss_dssp             GGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHH-
T ss_pred             HHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHHHhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHH-
Confidence            999999999999999999999998877766665 6999999999987532  335678899999999975 56777666 


Q ss_pred             ccCcHHHHHHHhccCChH------HHH---HHHHHHHHhcccCc-----HHHHHHHHHcCChHHHHHHhhhC--CHHHHH
Q 017249          234 SDGGILTLVETVEDGSLV------STQ---HAVGALLSLCQSCR-----DKYRQLILKEGAIPGLLRLTVEG--TFEAQE  297 (375)
Q Consensus       234 ~~g~v~~Lv~lL~~~~~~------~~~---~a~~~L~~l~~~~~-----~~~~~~l~~~g~v~~L~~ll~~~--~~~~~~  297 (375)
                      +.|+++.|..+|..+.+.      ...   .++.++.-|+..++     ..++..+.+.|+++.|++++...  +..++.
T Consensus       252 Et~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~~~t~~nQ~~~~~~g~l~~Ll~ll~~~~~p~~i~~  331 (651)
T 3grl_A          252 EGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPPGATSSCQKAMFQCGLLQQLCTILMATGVPADILT  331 (651)
T ss_dssp             HTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHTTHHHHHHHHHTCSSCCHHHHH
T ss_pred             HcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCCCCCHHHHHHHHHCCCHHHHHHHHccCCCCHHHHH
Confidence            789999999999754321      122   36667777766532     35678899999999999988754  678999


Q ss_pred             HHHHHHHHhhcCChh---hhhh---------hhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHH
Q 017249          298 RARTLLDLLRDTPQE---KRLS---------SSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMEL  355 (375)
Q Consensus       298 ~A~~~L~~l~~~~~~---~~~~---------~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~  355 (375)
                      .|..++..+.+.++.   .+.+         .-++..|+..+. +.. ....+-.|..+++-++....+-
T Consensus       332 ~Al~tla~~irgN~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~-~~~-~~~lR~Aa~~cl~ay~~~N~~~  399 (651)
T 3grl_A          332 ETINTVSEVIRGCQVNQDYFASVNAPSNPPRPAIVVLLMSMVN-ERQ-PFVLRCAVLYCFQCFLYKNQKG  399 (651)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHCEESSSSCEEHHHHHHHHHTC-TTS-CHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHhhccCCCCCCcChHHHHHHHHhc-ccc-cHHHHHHHHHHHHHHHhCCHHH
Confidence            999999988877733   2221         113333333222 222 3677777888888887555433

>3grl_A General vesicular transport factor P115; vesicle transport, membrane trafficking, membrane tethering, fusion, snare, RAB GTPase, armadillo repeats; 2.00A {Bos taurus} PDB: 3gq2_A 2w3c_A

Probab=99.66  E-value=5.1e-14  Score=135.86  Aligned_cols=287  Identities=13%  Similarity=0.090  Sum_probs=224.7

Q ss_pred             hHhHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCChh----------------hHHHHHh-cCChHHHHHhhCCCCHH
Q 017249           23 KQALIEELSDKLIN--GDLETKIEAARDIRKVVKKSSLK----------------TRSEFAA-AGVVQPLVLMLVSPNLD   83 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~----------------~~~~~~~-~g~v~~Lv~~L~~~~~~   83 (375)
                      ...+++.|+..|+.  .|.+....++.+|.++.....++                +.+.+.+ .+.++.|+.+|++.+..
T Consensus        58 g~~~l~~li~~L~~d~~D~e~v~~~LetL~~l~~~~~~~~~~~~~~~~~~~~~~~~~d~f~~~~~~i~~Ll~lL~~~df~  137 (651)
T 3grl_A           58 GIQAMEHLIHVLQTDRSDSEIIGYALDTLYNIISNDEEEEVEENSTRQSEDLGSQFTEIFIKQQENVTLLLSLLEEFDFH  137 (651)
T ss_dssp             HHHTHHHHHHHHHSCTTCHHHHHHHHHHHHHHHCCC--------------CHHHHHHHHHHHSTHHHHHHHHHTTCCCHH
T ss_pred             hhhhHHHHHHHHhcccccHHHHHHHHHHHHHHhCCCCcccccccccccchHHHHHHHHHHHcCCccHHHHHHHhcCccHH
Confidence            46679999999984  58888889999998877654111                2234543 47899999999999999


Q ss_pred             HHHHHHHHHHHhhccChh-hHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHh
Q 017249           84 AIESSLLALLNLAVRNER-NKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQIL  160 (375)
Q Consensus        84 ~~~~a~~~L~~L~~~~~~-~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL  160 (375)
                      ++..++..|..|+...+. ++..+.. .++++.|+.+|.+....+|..++..|.+|+.+... +..+.-.|+++.|+.++
T Consensus       138 vR~~alqlL~~L~~~r~~~~Q~~Il~~p~gi~~Lv~lL~d~rE~iRneallLL~~Lt~~n~~iQklVAFEnaFe~Lf~Ii  217 (651)
T 3grl_A          138 VRWPGVKLLTSLLKQLGPQVQQIILVSPMGVSRLMDLLADSREVIRNDGVLLLQALTRSNGAIQKIVAFENAFERLLDII  217 (651)
T ss_dssp             HHHHHHHHHHHHHHHSHHHHHHHHHHSTTHHHHHHGGGGCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCcHHHHHHHHhCcccHHHHHHHHhCchHHHHHHHHHHHHHHhcCCHHHHHHHHHhccHHHHHHHH
Confidence            999999999999988877 8899996 59999999999999999999999999999998765 55556779999999999


Q ss_pred             ccCCH----HHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhhhcccc----hHHHHH---HHHHHHHhhCC----
Q 017249          161 HSGSV----QGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLKDCKKY----SKFAEK---ATALLEILSSS----  224 (375)
Q Consensus       161 ~~~~~----~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~----~~~~~~---a~~~L~~l~~~----  224 (375)
                      ..+..    .+...++.+|.||...+ .|+..+.+.|+++.|..++..+.+.    +....+   ++.+++-|+..    
T Consensus       218 ~~Eg~~~Ggivv~DCL~ll~nLLr~N~sNQ~~FrEt~~i~~L~~LL~~~~~~~~W~~Qk~~N~~~~L~iIrlLv~~~~~~  297 (651)
T 3grl_A          218 TEEGNSDGGIVVEDCLILLQNLLKNNNSNQNFFKEGSYIQRMKPWFEVGDENSGWSAQKVTNLHLMLQLVRVLVSPNNPP  297 (651)
T ss_dssp             HHHTGGGSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCGGGGGGGGCCCSCSSCCCHHHHHHHHHHHHHHHHHTCTTSCH
T ss_pred             HhcCCCccchhHHHHHHHHHHHHhcCHHHHHHHHHcCCHHHHHHHhCCCccccccHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            87653    78999999999999775 5888899999999999999754221    112223   56666666543    


Q ss_pred             ---hhhhHHHhhccCcHHHHHHHhccC--ChHHHHHHHHHHHHhcccCcHHHHHHHHHcC---------ChHHHHHHhhh
Q 017249          225 ---EEGRIAITNSDGGILTLVETVEDG--SLVSTQHAVGALLSLCQSCRDKYRQLILKEG---------AIPGLLRLTVE  290 (375)
Q Consensus       225 ---~~~~~~~~~~~g~v~~Lv~lL~~~--~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g---------~v~~L~~ll~~  290 (375)
                         +.+++.+. +.|+++.|++++...  ...++..|+.+++.+..++ +..++.+.+..         ++..|+.++.+
T Consensus       298 ~~t~~nQ~~~~-~~g~l~~Ll~ll~~~~~p~~i~~~Al~tla~~irgN-~~~Q~~fa~~~vp~~~~~p~li~lL~~~~~~  375 (651)
T 3grl_A          298 GATSSCQKAMF-QCGLLQQLCTILMATGVPADILTETINTVSEVIRGC-QVNQDYFASVNAPSNPPRPAIVVLLMSMVNE  375 (651)
T ss_dssp             HHHHHHHHHHH-HTTHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHTTC-HHHHHHHHHCEESSSSCEEHHHHHHHHHTCT
T ss_pred             CCCHHHHHHHH-HCCCHHHHHHHHccCCCCHHHHHHHHHHHHHHHhCC-HHHHHHHhhccCCCCCCcChHHHHHHHHhcc
Confidence               35677777 689999999998764  5788999999999999887 57777777633         33334444544


Q ss_pred             -CCHHHHHHHHHHHHHhhcCCh
Q 017249          291 -GTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       291 -~~~~~~~~A~~~L~~l~~~~~  311 (375)
                       ....+|-.|+.++..+...+.
T Consensus       376 ~~~~~lR~Aa~~cl~ay~~~N~  397 (651)
T 3grl_A          376 RQPFVLRCAVLYCFQCFLYKNQ  397 (651)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTCH
T ss_pred             cccHHHHHHHHHHHHHHHhCCH
Confidence             357888888889998876663

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.63  E-value=5e-14  Score=126.17  Aligned_cols=264  Identities=17%  Similarity=0.072  Sum_probs=198.2

Q ss_pred             hhHHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHH
Q 017249           15 EEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLN   94 (375)
Q Consensus        15 ~~~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~   94 (375)
                      ....+.+.....++.|+..|.++++.++..|++.|.++...            +.++.|+.+|.++++.++..|+++|..
T Consensus        13 ~~~l~~~~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~d~~~~vR~~A~~aL~~   80 (280)
T 1oyz_A           13 EYGLYNQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAFILGQ   80 (280)
T ss_dssp             THHHHHHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSSHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCCc------------hHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence            33445566777899999999999999999999999987521            247889999999999999999999999


Q ss_pred             hhccChhhHHHHHHcCChHHHH-HhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHH
Q 017249           95 LAVRNERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVT  173 (375)
Q Consensus        95 L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~  173 (375)
                      +..... ....     .++.|. .++.+.++.++..++++|.++......    .....++.|+.+++++++.++..++.
T Consensus        81 l~~~~~-~~~~-----l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~~~~vR~~a~~  150 (280)
T 1oyz_A           81 IKICKK-CEDN-----VFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAF  150 (280)
T ss_dssp             SCCCTT-THHH-----HHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             hccccc-cchH-----HHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCCCHHHHHHHHH
Confidence            875322 1111     223344 245678999999999999998643221    12356889999999999999999999


Q ss_pred             HHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHH
Q 017249          174 ALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST  253 (375)
Q Consensus       174 ~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~  253 (375)
                      +|.++..          .+.++.|+.++.++  +..++..+.++|..+...         ....++.|+.++.++++.++
T Consensus       151 aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~~~---------~~~~~~~L~~~l~d~~~~vR  209 (280)
T 1oyz_A          151 AISVIND----------KATIPLLINLLKDP--NGDVRNWAAFAININKYD---------NSDIRDCFVEMLQDKNEEVR  209 (280)
T ss_dssp             HHHTC-------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCC---------CHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHhcCC----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHhhccC---------cHHHHHHHHHHhcCCCHHHH
Confidence            9998743          35889999999875  456888899999887422         23467889999999999999


Q ss_pred             HHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCC
Q 017249          254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDG  333 (375)
Q Consensus       254 ~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g  333 (375)
                      ..|+++|..+.            ....++.|+.++.+++  ++..|+.+|..+...        .+++.|...+....+ 
T Consensus       210 ~~A~~aL~~~~------------~~~~~~~L~~~l~d~~--vr~~a~~aL~~i~~~--------~~~~~L~~~l~~~~~-  266 (280)
T 1oyz_A          210 IEAIIGLSYRK------------DKRVLSVLCDELKKNT--VYDDIIEAAGELGDK--------TLLPVLDTMLYKFDD-  266 (280)
T ss_dssp             HHHHHHHHHTT------------CGGGHHHHHHHHTSSS--CCHHHHHHHHHHCCG--------GGHHHHHHHHTTSSC-
T ss_pred             HHHHHHHHHhC------------CHhhHHHHHHHhcCcc--HHHHHHHHHHhcCch--------hhhHHHHHHHhcCCC-
Confidence            99999999885            2346788888887644  899999999998652        477888877764333 


Q ss_pred             hHHHHHHHHHHH
Q 017249          334 ADKAAETAKRLL  345 (375)
Q Consensus       334 ~~~~~~~a~~~l  345 (375)
                       +.....+...|
T Consensus       267 -~~~~~~~~~~l  277 (280)
T 1oyz_A          267 -NEIITSAIDKL  277 (280)
T ss_dssp             -CHHHHHHHHHH
T ss_pred             -cHHHHHHHHHh
Confidence             34444444443

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.56  E-value=6.2e-14  Score=144.88  Aligned_cols=312  Identities=12%  Similarity=0.106  Sum_probs=224.7

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHH-HH---hcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSE-FA---AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~-~~---~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +.++.|+..+.++++..+..++.+|..++... +..... ..   -...++.+++++++++++++..|+++|.++....+
T Consensus       128 ~ll~~L~~~l~~~~~~~r~~al~~L~~i~~~~-~~~~~~~~~~~~~~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~~  206 (852)
T 4fdd_A          128 DLLPKLCSLLDSEDYNTCEGAFGALQKICEDS-AEILDSDVLDRPLNIMIPKFLQFFKHSSPKIRSHAVACVNQFIISRT  206 (852)
T ss_dssp             THHHHHHHHHSCSSHHHHHHHHHHHHHHHHHH-TTHHHHCSSSSCHHHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTTC
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHh-HHHhchhhhcchHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccc
Confidence            57889999999999999999999999999776 222110 00   12357778888889999999999999998886432


Q ss_pred             hhHHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249          101 RNKVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus       101 ~~r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      .   .+..  ...++.|+.++.++++.++..++.+|..++.....  ...+  .+.++.++..+.+.+..++..|+..+.
T Consensus       207 ~---~~~~~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~~~~l--~~l~~~l~~~~~~~~~~vr~~a~e~l~  281 (852)
T 4fdd_A          207 Q---ALMLHIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRLLPHM--HNIVEYMLQRTQDQDENVALEACEFWL  281 (852)
T ss_dssp             H---HHHTSHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHHGGGH--HHHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             H---HHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHHHHHH--HHHHHHHHHHccCCcHHHHHHHHHHHH
Confidence            1   1111  24678888888889999999999999999875431  1111  257888888889989999999999999


Q ss_pred             HhccCCCCchhhhh--cCCcHHHHHHhh----------hc---c-------cchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249          177 YLSTCKENSSPILD--ATAVPPLINLLK----------DC---K-------KYSKFAEKATALLEILSSSEEGRIAITNS  234 (375)
Q Consensus       177 ~L~~~~~~~~~i~~--~g~i~~Lv~ll~----------~~---~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  234 (375)
                      .++.....+..+..  ...++.++..+.          .+   +       ..-.++..+..+|..++....  ..++  
T Consensus       282 ~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~dd~~~~~~vr~~a~~~L~~la~~~~--~~~~--  357 (852)
T 4fdd_A          282 TLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGDDTISDWNLRKCSAAALDVLANVYR--DELL--  357 (852)
T ss_dssp             HHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC------------CCCCHHHHHHHHHHHHHHHHG--GGGH--
T ss_pred             HHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccccccccchHHHHHHHHHHHHHHhcc--HHHH--
Confidence            99865432221111  134566666552          11   0       011356778888888875432  2233  


Q ss_pred             cCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--
Q 017249          235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--  312 (375)
Q Consensus       235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--  312 (375)
                      ...++.+..++.+.+...|+.|+++|.+++.+... .... .-.++++.|+..+.+.++.+|..|+++|..++.....  
T Consensus       358 ~~l~~~l~~~l~~~~~~~R~aa~~alg~i~~~~~~-~~~~-~l~~~l~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~  435 (852)
T 4fdd_A          358 PHILPLLKELLFHHEWVVKESGILVLGAIAEGCMQ-GMIP-YLPELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQP  435 (852)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHTTTTTHH-HHGG-GHHHHHHHHHHHTTCSSHHHHHHHHHHHHHTHHHHHHSC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcchH-HHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccch
Confidence            24677788888888999999999999999988732 1111 2256789999999999999999999999999875422  


Q ss_pred             -hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          313 -KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       313 -~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                       ...-.++++.|+..|.   +..++.++.|..+|.++.+.
T Consensus       436 ~~~~~~~ll~~L~~~L~---d~~~~vr~~a~~aL~~l~~~  472 (852)
T 4fdd_A          436 PDTYLKPLMTELLKRIL---DSNKRVQEAACSAFATLEEE  472 (852)
T ss_dssp             TTTTHHHHHHHHHHHHT---CSSHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHHHHH
Confidence             2344568888887774   55689999999999999754

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.52  E-value=1.7e-12  Score=127.98  Aligned_cols=307  Identities=13%  Similarity=0.117  Sum_probs=224.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.++.++++++++++..|+..+..++....+..+....-...++.+..+++++++.++..++++|..++....  .
T Consensus       280 ~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~p~l~~~l~d~~~~vR~~a~~~l~~l~~~~~--~  357 (588)
T 1b3u_A          280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPILG--K  357 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHHC--H
T ss_pred             hHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhChhhhhhHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhh--H
Confidence            45678888888888999999999999999876522222212234567888899999999999999999999985311  1


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                       .......+|.+..++++.++++|..++.++..+...-....  .....++.|..++.+.+..++..++.+|..++..-.
T Consensus       358 -~~~~~~l~p~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~--~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~  434 (588)
T 1b3u_A          358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIRQ--LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             -HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHHH--HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             -hHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHhcCHHH--HHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcC
Confidence             11234578899999998899999999999888865432111  224567888889998899999999999998874311


Q ss_pred             CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                      .  .......++.+...+.+.  ...+++.+..++..++...... ...  ...++.|..++.+.+..+|..++.++..+
T Consensus       435 ~--~~~~~~l~~~l~~~l~d~--~~~Vr~~a~~~l~~l~~~~~~~-~~~--~~llp~l~~~~~~~~~~~R~~a~~~l~~l  507 (588)
T 1b3u_A          435 V--EFFDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGKE-WAH--ATIIPKVLAMSGDPNYLHRMTTLFCINVL  507 (588)
T ss_dssp             G--GGCCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCHH-HHH--HHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHHHHhcCC--cHHHHHHHHHHHHHHHHHhCch-hHH--HHHHHHHHHHhhCCCHHHHHHHHHHHHHH
Confidence            1  111223567788887765  4578899999999887532221 112  35778888888888899999999999999


Q ss_pred             cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                      +...+.    ......+++.|+.++.+.++.+|..++++|..+...-........+++.|.. +.  .|..++.+..|..
T Consensus       508 ~~~~~~----~~~~~~~~~~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~~~~~~~~p~l~~-l~--~d~d~~vr~~a~~  580 (588)
T 1b3u_A          508 SEVCGQ----DITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKPILEK-LT--QDQDVDVKYFAQE  580 (588)
T ss_dssp             HHHHHH----HHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHHH-HT--TCSSHHHHHHHHH
T ss_pred             HHhcCH----HHHHHHHHHHHHhhCCCCCchHHHHHHHHHHHHHHHhchhhhHHHHHHHHHH-Hc--CCCchhHHHHHHH
Confidence            765321    2244578899999999999999999999999998755444444456665544 44  5667899999999


Q ss_pred             HHHHHH
Q 017249          344 LLQDMV  349 (375)
Q Consensus       344 ~l~~l~  349 (375)
                      ++..+.
T Consensus       581 al~~l~  586 (588)
T 1b3u_A          581 ALTVLS  586 (588)
T ss_dssp             HHHHTT
T ss_pred             HHHHhh
Confidence            987653

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.50  E-value=1.3e-12  Score=111.81  Aligned_cols=188  Identities=23%  Similarity=0.188  Sum_probs=157.0

Q ss_pred             cCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhH
Q 017249           67 AGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        67 ~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      .+.++.|++.|.++++.++..++..|..+..           ..+++.|+.+|.++++.++..++.+|..+.        
T Consensus        18 ~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~--------   78 (211)
T 3ltm_A           18 PEKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIG--------   78 (211)
T ss_dssp             GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSCHHHHHHHHHHHHHHC--------
T ss_pred             HhHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-----------ccHHHHHHHHHcCCCHHHHHHHHHHHHhhC--------
Confidence            3579999999999999999999999998754           256899999999999999999999999874        


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE  226 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~  226 (375)
                        ....++.|+.+|.++++.++..++.+|..+..          .+.++.|+.++.++  +..++..+..+|..+.    
T Consensus        79 --~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~----  140 (211)
T 3ltm_A           79 --DERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG----  140 (211)
T ss_dssp             --CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC----
T ss_pred             --CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCC--CHHHHHHHHHHHHHcC----
Confidence              24678999999999999999999999998843          35788999999765  5578888999998874    


Q ss_pred             hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                             ....++.|..++.++++.++..|+.+|..+..            ..+++.|..++.++++.+|..|..+|..+
T Consensus       141 -------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~------------~~~~~~L~~~l~d~~~~vr~~A~~aL~~~  201 (211)
T 3ltm_A          141 -------DERAVEPLIKALKDEDGWVRQSAADALGEIGG------------ERVRAAMEKLAETGTGFARKVAVNYLETH  201 (211)
T ss_dssp             -------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS------------HHHHHHHHHHHHHCCHHHHHHHHHHHHC-
T ss_pred             -------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc------------hhHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence                   34578899999999999999999999999842            23567788899999999999999999998


Q ss_pred             hcCC
Q 017249          307 RDTP  310 (375)
Q Consensus       307 ~~~~  310 (375)
                      ....
T Consensus       202 ~~~~  205 (211)
T 3ltm_A          202 KSFN  205 (211)
T ss_dssp             ----
T ss_pred             CCCC
Confidence            8765

>4fdd_A Transportin-1; heat repeats, karyopherin, nuclear import, protein transport importin, transportin, transport protein; 2.30A {Homo sapiens} PDB: 2ot8_A 2h4m_A 2z5k_A 2z5j_A 2qmr_A 2z5m_A 2z5n_A 2z5o_A 1qbk_B*

Probab=99.49  E-value=4e-13  Score=138.81  Aligned_cols=313  Identities=12%  Similarity=0.081  Sum_probs=212.5

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.++..+++++++++..|+++|..+.... +..... .-...++.++..+.+++++++..++++|..++...+..-
T Consensus       173 ~~il~~l~~~l~~~~~~vR~~A~~aL~~~~~~~-~~~~~~-~~~~~l~~l~~~~~d~~~~vr~~a~~~L~~l~~~~~~~~  250 (852)
T 4fdd_A          173 NIMIPKFLQFFKHSSPKIRSHAVACVNQFIISR-TQALML-HIDSFIENLFALAGDEEPEVRKNVCRALVMLLEVRMDRL  250 (852)
T ss_dssp             HHHHHHHTTTTTCSSHHHHHHHHHHHHTTTTTT-CHHHHT-SHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcc-cHHHHH-HHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHhCHHHH
Confidence            346777888888899999999999999887655 221100 012467888899999999999999999999998655332


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHh-----------cc--------
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQIL-----------HS--------  162 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL-----------~~--------  162 (375)
                      .... .+.++.++.++.+.++.++..|+..+..++.....+..+.  -...++.++..+           .+        
T Consensus       251 ~~~l-~~l~~~l~~~~~~~~~~vr~~a~e~l~~l~~~~~~~~~~~~~~~~l~p~ll~~l~~~e~d~~~~~~d~~ed~~~d  329 (852)
T 4fdd_A          251 LPHM-HNIVEYMLQRTQDQDENVALEACEFWLTLAEQPICKDVLVRHLPKLIPVLVNGMKYSDIDIILLKGDVEGGSGGD  329 (852)
T ss_dssp             GGGH-HHHHHHHHHHHTCSSHHHHHHHHHHHHHHTTSTTHHHHHTTTHHHHHHHHHHHTSCCHHHHHHHHC---------
T ss_pred             HHHH-HHHHHHHHHHccCCcHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHcCCcHhHHHHhcCCcccccccc
Confidence            1111 2467888888888899999999999999987643333221  123456666665           22        


Q ss_pred             ---CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249          163 ---GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  239 (375)
Q Consensus       163 ---~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  239 (375)
                         .+..++..++.+|..|+....  ..+. ..+++.+...+.+.  +..+++.++.+|++++........-. -.+.++
T Consensus       330 d~~~~~~vr~~a~~~L~~la~~~~--~~~~-~~l~~~l~~~l~~~--~~~~R~aa~~alg~i~~~~~~~~~~~-l~~~l~  403 (852)
T 4fdd_A          330 DTISDWNLRKCSAAALDVLANVYR--DELL-PHILPLLKELLFHH--EWVVKESGILVLGAIAEGCMQGMIPY-LPELIP  403 (852)
T ss_dssp             ---CCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHHTCS--SHHHHHHHHHHHHHTTTTTHHHHGGG-HHHHHH
T ss_pred             cccccchHHHHHHHHHHHHHHhcc--HHHH-HHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhcchHHHHHH-HHHHHH
Confidence               122457888888888875422  1122 23566677777654  45788999999999997544322112 246888


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhh
Q 017249          240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSS  317 (375)
Q Consensus       240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~  317 (375)
                      .++..+.++++.++..|+++|.+++....+. ...-.-.++++.|+..+.+.++.+|+.|+++|.++++.....+  .-.
T Consensus       404 ~l~~~l~d~~~~Vr~~a~~~l~~l~~~~~~~-~~~~~~~~ll~~L~~~L~d~~~~vr~~a~~aL~~l~~~~~~~l~~~l~  482 (852)
T 4fdd_A          404 HLIQCLSDKKALVRSITCWTLSRYAHWVVSQ-PPDTYLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYLA  482 (852)
T ss_dssp             HHHHHTTCSSHHHHHHHHHHHHHTHHHHHHS-CTTTTHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGGGGGHH
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHHHHHHhccc-hHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhhHhhHhHHH
Confidence            9999999999999999999999998643110 0001123577888888888899999999999999987554322  235


Q ss_pred             hhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          318 SVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       318 g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ++++.|+..+..   ...+....+..++..+.
T Consensus       483 ~ll~~L~~~l~~---~~~~~~~~~~~ai~~l~  511 (852)
T 4fdd_A          483 YILDTLVFAFSK---YQHKNLLILYDAIGTLA  511 (852)
T ss_dssp             HHHHHHHHHHHH---CCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH---hChHHHHHHHHHHHHHH
Confidence            577777766642   22344444455555554

>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}

Probab=99.48  E-value=2.7e-12  Score=109.83  Aligned_cols=190  Identities=23%  Similarity=0.208  Sum_probs=158.6

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ...+.++.|+..|+++++.++..|+..|..+...            ..++.|+++|.++++.++..++++|+.+..    
T Consensus        16 ~~~~~~~~L~~~L~~~~~~vR~~A~~~L~~~~~~------------~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----   79 (211)
T 3ltm_A           16 ADPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDAWVRRAAADALGQIGD----   79 (211)
T ss_dssp             CCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSCHHHHHHHHHHHHHHCC----
T ss_pred             cCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhCCc------------cHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence            4567899999999999999999999999886432            458999999999999999999999998863    


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                             .+.++.|+.+|.++++.++..++.+|..+..          ...++.|+.++.++++.++..++.+|..+.. 
T Consensus        80 -------~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  141 (211)
T 3ltm_A           80 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  141 (211)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC-
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-
Confidence                   2468899999999999999999999998843          4578999999999999999999999998842 


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                               ...++.|..++.++  +..++..+..+|..+.           ....++.|..++.++++.++..|..+|.
T Consensus       142 ---------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~  199 (211)
T 3ltm_A          142 ---------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE  199 (211)
T ss_dssp             ---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                     34788899999765  4578888999999874           2457788999999999999999999999


Q ss_pred             HhcccC
Q 017249          262 SLCQSC  267 (375)
Q Consensus       262 ~l~~~~  267 (375)
                      ++....
T Consensus       200 ~~~~~~  205 (211)
T 3ltm_A          200 THKSFN  205 (211)
T ss_dssp             C-----
T ss_pred             hcCCCC
Confidence            987765

>1b3u_A Protein (protein phosphatase PP2A); scaffold protein, phosphorylation, heat repeat; 2.30A {Homo sapiens} SCOP: a.118.1.2 PDB: 2ie4_A* 2ie3_A* 2npp_A* 3k7v_A* 3k7w_A* 3fga_A* 2pf4_A 2iae_A 2nym_A* 2nyl_A* 3dw8_A* 2pkg_A 3c5w_A

Probab=99.48  E-value=3e-12  Score=126.28  Aligned_cols=307  Identities=11%  Similarity=0.095  Sum_probs=215.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.+...++++++.++..|+..|..++... ...   ......++.+..++++++..++..|+.+|..++...+.  
T Consensus       163 ~~l~~~l~~l~~d~~~~VR~~a~~~l~~l~~~~-~~~---~~~~~l~~~l~~~~~d~~~~vr~~a~~~l~~l~~~~~~--  236 (588)
T 1b3u_A          163 AELRQYFRNLCSDDTPMVRRAAASKLGEFAKVL-ELD---NVKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ--  236 (588)
T ss_dssp             HHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTS-CHH---HHHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH--
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHh-cHH---hHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCH--
Confidence            355677777778889999999999999998765 211   12346788889999999999999999999998864332  


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                       .......+|.+..++++.+..+|..++.+|..++.....  .......++.+..+++++++.++..++.+|..++..-.
T Consensus       237 -~~~~~~~~~~l~~~~~d~~~~vR~~a~~~l~~l~~~~~~--~~~~~~l~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~  313 (588)
T 1b3u_A          237 -EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLS  313 (588)
T ss_dssp             -HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSC
T ss_pred             -HHHHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhCc--ccchhHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHhC
Confidence             122345788888888888999999999999998764221  11234678999999999999999999999999885422


Q ss_pred             C--chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          184 N--SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       184 ~--~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      .  .........++.+..++.+.  +..++..++.+|..++..-... ...  ...++.+..++.+.++.++..++.+|.
T Consensus       314 ~~~~~~~~~~~l~p~l~~~l~d~--~~~vR~~a~~~l~~l~~~~~~~-~~~--~~l~p~l~~~l~d~~~~Vr~~a~~~l~  388 (588)
T 1b3u_A          314 ADCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILGKD-NTI--EHLLPLFLAQLKDECPEVRLNIISNLD  388 (588)
T ss_dssp             TTTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHCHH-HHH--HHTHHHHHHHHTCSCHHHHHHHHTTCH
T ss_pred             hhhhhhHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHHhhHh-HHH--HHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence            1  11122345677787887765  4477888888888776421111 111  346788888888888899999998888


Q ss_pred             HhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHH
Q 017249          262 SLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETA  341 (375)
Q Consensus       262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a  341 (375)
                      .++.....+    .....++|.|..++.+.+.++|..++.+|..+...-....+...+++.++..|.   +.....++.|
T Consensus       389 ~l~~~~~~~----~~~~~~lp~l~~~~~d~~~~vr~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l~---d~~~~Vr~~a  461 (588)
T 1b3u_A          389 CVNEVIGIR----QLSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWLV---DHVYAIREAA  461 (588)
T ss_dssp             HHHHHSCHH----HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGGG---CSSHHHHHHH
T ss_pred             HHHHhcCHH----HHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHhc---CCcHHHHHHH
Confidence            877654221    122456677777777778888888888888776543323334456666665553   5556777777


Q ss_pred             HHHHHHHHHH
Q 017249          342 KRLLQDMVQR  351 (375)
Q Consensus       342 ~~~l~~l~~~  351 (375)
                      ..++..+...
T Consensus       462 ~~~l~~l~~~  471 (588)
T 1b3u_A          462 TSNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            7777777543

>1oyz_A Hypothetical protein YIBA; structural genomics, PSI, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Escherichia coli} SCOP: a.118.1.16

Probab=99.48  E-value=3.3e-12  Score=114.29  Aligned_cols=229  Identities=13%  Similarity=0.011  Sum_probs=173.0

Q ss_pred             HhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh
Q 017249           65 AAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK  144 (375)
Q Consensus        65 ~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~  144 (375)
                      .+.+.++.|++.|.++++.++..|+++|+++..           .+.++.|+.++.++++.++..|+++|..+.......
T Consensus        20 ~~~~~i~~L~~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~d~~~~vR~~A~~aL~~l~~~~~~~   88 (280)
T 1oyz_A           20 CKKLNDDELFRLLDDHNSLKRISSARVLQLRGG-----------QDAVRLAIEFCSDKNYIRRDIGAFILGQIKICKKCE   88 (280)
T ss_dssp             HHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCC-----------HHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCTTTH
T ss_pred             HHHhhHHHHHHHHHcCCHHHHHHHHHHHHccCC-----------chHHHHHHHHHcCCCHHHHHHHHHHHHHhccccccc
Confidence            345789999999999999999999999999863           235789999999999999999999999886433221


Q ss_pred             hHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          145 PAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       145 ~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                      .     ..++.|.+ ++.++++.++..++++|.++......    .....++.|+..+.++  +..++..++.+|.++. 
T Consensus        89 ~-----~l~~~L~~~~~~d~~~~vr~~a~~aL~~l~~~~~~----~~~~~~~~L~~~l~d~--~~~vR~~a~~aL~~~~-  156 (280)
T 1oyz_A           89 D-----NVFNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDK--STNVRRATAFAISVIN-  156 (280)
T ss_dssp             H-----HHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCS--CHHHHHHHHHHHHTC--
T ss_pred             h-----HHHHHHHHHHhcCCCHHHHHHHHHHHHHHhccCCc----ccHHHHHHHHHHhhCC--CHHHHHHHHHHHHhcC-
Confidence            1     12344442 45778899999999999998743211    1224678888888765  4578888888888664 


Q ss_pred             ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249          224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  303 (375)
Q Consensus       224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L  303 (375)
                                ....++.|+.++.++++.++..|+++|..+.... +         .+++.|+.++.+.++.+|..|+++|
T Consensus       157 ----------~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~---------~~~~~L~~~l~d~~~~vR~~A~~aL  216 (280)
T 1oyz_A          157 ----------DKATIPLLINLLKDPNGDVRNWAAFAININKYDN-S---------DIRDCFVEMLQDKNEEVRIEAIIGL  216 (280)
T ss_dssp             ------------CCHHHHHHHHTCSSHHHHHHHHHHHHHHTCCC-H---------HHHHHHHHHTTCSCHHHHHHHHHHH
T ss_pred             ----------CHHHHHHHHHHHcCCCHHHHHHHHHHHHhhccCc-H---------HHHHHHHHHhcCCCHHHHHHHHHHH
Confidence                      2468999999999999999999999999985433 2         3467888899999999999999999


Q ss_pred             HHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          304 DLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       304 ~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ..+..        ..+++.|+..+.   ++  ..+..|..+|..+-
T Consensus       217 ~~~~~--------~~~~~~L~~~l~---d~--~vr~~a~~aL~~i~  249 (280)
T 1oyz_A          217 SYRKD--------KRVLSVLCDELK---KN--TVYDDIIEAAGELG  249 (280)
T ss_dssp             HHTTC--------GGGHHHHHHHHT---SS--SCCHHHHHHHHHHC
T ss_pred             HHhCC--------HhhHHHHHHHhc---Cc--cHHHHHHHHHHhcC
Confidence            99873        247777877774   22  25566666666664

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.47  E-value=5.8e-12  Score=106.86  Aligned_cols=187  Identities=23%  Similarity=0.219  Sum_probs=158.8

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ...+..+.+++.|+++++.++..|+..|..+...            +.++.|+++|.++++.++..++++|..+..    
T Consensus        11 ~~~~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~~------------~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~----   74 (201)
T 3ltj_A           11 TDPEKVEMYIKNLQDDSYYVRRAAAYALGKIGDE------------RAVEPLIKALKDEDAWVRRAAADALGQIGD----   74 (201)
T ss_dssp             CCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHCCG------------GGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----
T ss_pred             cCCcchHHHHHHhcCCCHHHHHHHHHHHHhcCCh------------hHHHHHHHHHcCCCHHHHHHHHHHHHhhCC----
Confidence            3457789999999999999999999999876532            358999999999999999999999998753    


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                             ...++.|+.+|.++++.++..|+++|..+..          ...++.|+.++.++++.++..|+++|..+.. 
T Consensus        75 -------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-  136 (201)
T 3ltj_A           75 -------ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDEDWFVRIAAAFALGEIGD-  136 (201)
T ss_dssp             -------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHTC-
T ss_pred             -------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC-
Confidence                   2468899999999999999999999998743          4578999999999999999999999998842 


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                               .+.++.|..++.+.  +..++..+..+|..+.           ....++.|..++.++++.++..|..+|.
T Consensus       137 ---------~~~~~~L~~~l~d~--~~~vr~~A~~aL~~~~-----------~~~~~~~L~~~l~d~~~~vr~~A~~aL~  194 (201)
T 3ltj_A          137 ---------ERAVEPLIKALKDE--DGWVRQSAADALGEIG-----------GERVRAAMEKLAETGTGFARKVAVNYLE  194 (201)
T ss_dssp             ---------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHC-----------SHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred             ---------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------chhHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence                     35788899999865  4578888999999873           3457788889999999999999999998


Q ss_pred             Hhc
Q 017249          262 SLC  264 (375)
Q Consensus       262 ~l~  264 (375)
                      .+-
T Consensus       195 ~l~  197 (201)
T 3ltj_A          195 THK  197 (201)
T ss_dssp             HCC
T ss_pred             HHH
Confidence            874

>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}

Probab=99.46  E-value=2.8e-12  Score=108.83  Aligned_cols=185  Identities=23%  Similarity=0.194  Sum_probs=156.5

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAI  147 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i  147 (375)
                      +..+.++++|+++++.++..|+++|..+..           ...++.|+++|.++++.++..++.+|..+..        
T Consensus        14 ~~~~~~i~~L~~~~~~vr~~A~~~L~~~~~-----------~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~--------   74 (201)
T 3ltj_A           14 EKVEMYIKNLQDDSYYVRRAAAYALGKIGD-----------ERAVEPLIKALKDEDAWVRRAAADALGQIGD--------   74 (201)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHCC-----------GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC--------
T ss_pred             cchHHHHHHhcCCCHHHHHHHHHHHHhcCC-----------hhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC--------
Confidence            457899999999999999999999998764           2468999999999999999999999988732        


Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh
Q 017249          148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG  227 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~  227 (375)
                        ...++.|+.+|.++++.++..|+++|..+..          ...++.|+.++.+.  +..++..+..+|..+.     
T Consensus        75 --~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~----------~~~~~~L~~~l~d~--~~~vr~~a~~aL~~~~-----  135 (201)
T 3ltj_A           75 --ERAVEPLIKALKDEDGWVRQSAAVALGQIGD----------ERAVEPLIKALKDE--DWFVRIAAAFALGEIG-----  135 (201)
T ss_dssp             --GGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC----------GGGHHHHHHHTTCS--SHHHHHHHHHHHHHHT-----
T ss_pred             --HHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc----------HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----
Confidence              4678999999999999999999999998743          34788899998765  5578888999998874     


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                            ....++.|..++.++++.++..|+.+|..+..   +         ..++.|..++.+.++.+|..|..+|..+.
T Consensus       136 ------~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~~---~---------~~~~~L~~~l~d~~~~vr~~A~~aL~~l~  197 (201)
T 3ltj_A          136 ------DERAVEPLIKALKDEDGWVRQSAADALGEIGG---E---------RVRAAMEKLAETGTGFARKVAVNYLETHK  197 (201)
T ss_dssp             ------CGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS---H---------HHHHHHHHHHHHCCHHHHHHHHHHHHHCC
T ss_pred             ------CHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc---h---------hHHHHHHHHHhCCCHHHHHHHHHHHHHHH
Confidence                  34688999999999999999999999999832   2         25678888889999999999999998875


Q ss_pred             c
Q 017249          308 D  308 (375)
Q Consensus       308 ~  308 (375)
                      .
T Consensus       198 ~  198 (201)
T 3ltj_A          198 S  198 (201)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.41  E-value=3.7e-12  Score=121.77  Aligned_cols=297  Identities=12%  Similarity=0.077  Sum_probs=200.5

Q ss_pred             HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC
Q 017249           24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~   99 (375)
                      .+.++.|+..+.++  ++..+..|+.+|..++....+....... ..+++.++..+.++  ++.++..|++++.++....
T Consensus       127 ~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~-~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~  205 (462)
T 1ibr_B          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQLQDKS-NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT  205 (462)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGTGGGH-HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhhHhHH-HHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHH
Confidence            45789999999888  9999999999999999754111111011 13678888999887  7999999999999865321


Q ss_pred             hhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249          100 ERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus       100 ~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      ...- ......-.++.+...+.+.++.++..++.+|..++.....  ...+ ....++.++..+++.+..++..++..+.
T Consensus       206 ~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~~~~~~~~~~~~-~~~l~~~~~~~~~~~~~~v~~~a~~~l~  284 (462)
T 1ibr_B          206 KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYM-GPALFAITIEAMKSDIDEVALQGIEFWS  284 (462)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTTT-TTTHHHHHHHHHHCSSHHHHHHHHHHHH
T ss_pred             HHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence            1110 0111111356666777788999999999999999865431  1111 1167788888888889999999999888


Q ss_pred             HhccCC------------------CCchhhhh---cCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHH
Q 017249          177 YLSTCK------------------ENSSPILD---ATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       177 ~L~~~~------------------~~~~~i~~---~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                      .++...                  .....+..   ...+|.++..+...+     .+..++..+..+|..++..-.  ..
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~--~~  362 (462)
T 1ibr_B          285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DD  362 (462)
T ss_dssp             HHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTT--TT
T ss_pred             HHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhccHHHHHHHHhcccccccccchHHHHHHHHHHHHHHhcc--HH
Confidence            887431                  01111111   235666666665421     122467788888888875322  13


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++  ...++.+...+.+.+...|..|+.+|..++.+..++..... -..+++.|+..+.+.++.+|..|+++|..++...
T Consensus       363 ~~--~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~~~~~~~~-l~~~~~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          363 IV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             HH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCTT-TTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHG
T ss_pred             HH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCcHHHHHHH-HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhc
Confidence            33  25677788888888999999999999999986532111111 1568899999999999999999999999998765


Q ss_pred             hhhhhhhhhHHHHHHHH
Q 017249          311 QEKRLSSSVLEKIVYDI  327 (375)
Q Consensus       311 ~~~~~~~g~~~~l~~~l  327 (375)
                      ...+.....+++++..|
T Consensus       440 ~~~~~~~~~l~~ll~~L  456 (462)
T 1ibr_B          440 PEAAINDVYLAPLLQCL  456 (462)
T ss_dssp             GGGCCSTTTHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHH
Confidence            44332334555555544

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.35  E-value=1.1e-10  Score=120.65  Aligned_cols=317  Identities=12%  Similarity=0.073  Sum_probs=218.8

Q ss_pred             HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCC--CHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSP--NLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~   97 (375)
                      .+.++.|+..+.++  ++..+..++.++..++....++   .+..  ...++.+...+.++  +.+++..++++|..++.
T Consensus       127 ~~ll~~l~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~---~~~~~~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~  203 (876)
T 1qgr_A          127 PELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPE---QLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLE  203 (876)
T ss_dssp             TTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCHH---HHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGG
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhcCHh---hHHhHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHH
Confidence            35688899999888  8999999999999998764111   1211  24567788888876  68999999999999875


Q ss_pred             cChhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           98 RNERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        98 ~~~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      .-...- ........++.+...+.+.+++++..++.+|..+....... ........++.++..+.+.+..++..++..+
T Consensus       204 ~~~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l  283 (876)
T 1qgr_A          204 FTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFW  283 (876)
T ss_dssp             GCHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHH
Confidence            322110 01111125667777787888999999999999988654321 1122236788888888888889999999888


Q ss_pred             HHhccCCC------------------Cchhhh---hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhH
Q 017249          176 HYLSTCKE------------------NSSPIL---DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRI  229 (375)
Q Consensus       176 ~~L~~~~~------------------~~~~i~---~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~  229 (375)
                      ..++....                  ......   -...++.++..+....     .+..++..+..+|..++..-.  .
T Consensus       284 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~  361 (876)
T 1qgr_A          284 SNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCE--D  361 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--G
T ss_pred             HHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHCc--H
Confidence            88874310                  000111   0235666777775321     122467778888888775322  1


Q ss_pred             HHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          230 AITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       230 ~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      .++  ...++.+...+.+.+..+|..|+++|..++.+..++..... -..+++.|+..+.+.++.+|..|+++|..++..
T Consensus       362 ~~~--~~~l~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~-~~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~  438 (876)
T 1qgr_A          362 DIV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKPL-VIQAMPTLIELMKDPSVVVRDTAAWTVGRICEL  438 (876)
T ss_dssp             GGH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHH
T ss_pred             hhH--HHHHHHHHHHccCCChHHHHHHHHHHHHHHcCCCHHHHHHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHh
Confidence            233  24667777788888899999999999999987643322222 245889999999999999999999999999876


Q ss_pred             Chhh----hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          310 PQEK----RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       310 ~~~~----~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      .+..    -.-..+++.++..|.   +. ++.+..|..+|..+....
T Consensus       439 ~~~~~~~~~~l~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~~  481 (876)
T 1qgr_A          439 LPEAAINDVYLAPLLQCLIEGLS---AE-PRVASNVCWAFSSLAEAA  481 (876)
T ss_dssp             CGGGTSSTTTHHHHHHHHHHHTT---SC-HHHHHHHHHHHHHHHHHH
T ss_pred             CchhcccHHHHHHHHHHHHHHHc---CC-HHHHHHHHHHHHHHHHHh
Confidence            5331    223457777777664   33 888999999999998654

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.35  E-value=9.3e-11  Score=116.07  Aligned_cols=221  Identities=15%  Similarity=0.114  Sum_probs=142.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh---
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN---  102 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~---  102 (375)
                      .++.+...|.++++.++..|+.++.++.... ++.   +.+.++++.|.++|.++++.++..|+.+|..++.++++.   
T Consensus       122 l~~~l~~~L~d~~~~VRk~A~~al~~i~~~~-p~~---~~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~  197 (591)
T 2vgl_B          122 LCEPLRKCLKDEDPYVRKTAAVCVAKLHDIN-AQM---VEDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLL  197 (591)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHHHSS-CCC---HHHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSC
T ss_pred             HHHHHHHHcCCCChHHHHHHHHHHHHHHhhC-hhh---cccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccch
Confidence            4566888888999999999999999999876 432   223467899999999999999999999999999865422   


Q ss_pred             ------HHHHHH----------------------------cCChHHHHHhhcCCChHHHHHHHHHHHHhhcc----CCCh
Q 017249          103 ------KVKIAT----------------------------AGAIPPLVELLKFQNGTLRELAAAAILTLSAA----APNK  144 (375)
Q Consensus       103 ------r~~i~~----------------------------~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~----~~~~  144 (375)
                            -..+..                            ...++.+..++++.++.++..|++++..+...    ++..
T Consensus       198 ~l~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~~~~~~l~~l~~~l~~~~~~V~~ea~~~i~~l~~~~~~~~~~~  277 (591)
T 2vgl_B          198 DLNPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKVLMKFLELLPKDSDYY  277 (591)
T ss_dssp             CCHHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHHHHHHHHHHHTTCSCSSTTHHHHHHHHHHHHSCCSCCBTTBSH
T ss_pred             hccHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHhhccCCCHHHH
Confidence                  111111                            13456666777888899999999999998742    2222


Q ss_pred             hHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                      ..+ .....+.|+.++. +++.++..++.+|..+... ++....     .+..+   +...+++..++..++.+|.+++.
T Consensus       278 ~~~-~~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~-----~~~~~---~~~~~d~~~Ir~~al~~L~~l~~  347 (591)
T 2vgl_B          278 NML-LKKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQ-----EIKVF---FVKYNDPIYVKLEKLDIMIRLAS  347 (591)
T ss_dssp             HHH-HHHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTT-----CTTTT---SCCTTSCHHHHHHHHHHHHHTCC
T ss_pred             HHH-HHHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHH-----HHHhh---eeccCChHHHHHHHHHHHHHHCC
Confidence            222 2455677776664 7889999999999988753 221111     11111   11111124555666666666553


Q ss_pred             ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          224 SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       224 ~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      .. +..      ..++.|..++.+.+..++..+++.|..++...
T Consensus       348 ~~-nv~------~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~  384 (591)
T 2vgl_B          348 QA-NIA------QVLAELKEYATEVDVDFVRKAVRAIGRCAIKV  384 (591)
T ss_dssp             SS-THH------HHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTC
T ss_pred             hh-hHH------HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC
Confidence            22 211      23444555555556666666666666665543

>2vgl_B AP-2 complex subunit beta-1; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Homo sapiens} SCOP: i.23.1.1 PDB: 2jkt_B 2jkr_B* 2xa7_B 1w63_B

Probab=99.35  E-value=5.7e-11  Score=117.60  Aligned_cols=265  Identities=13%  Similarity=0.100  Sum_probs=178.9

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh-hHHH
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK-PAIA  148 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~-~~i~  148 (375)
                      ++.+.++|.++++.++..|+.++.++...+++..   ...+.++.|..+|.++++.++..|+.+|..++...+.. ..-.
T Consensus       123 ~~~l~~~L~d~~~~VRk~A~~al~~i~~~~p~~~---~~~~~~~~l~~lL~d~d~~V~~~A~~aL~~i~~~~~~~~~~~l  199 (591)
T 2vgl_B          123 CEPLRKCLKDEDPYVRKTAAVCVAKLHDINAQMV---EDQGFLDSLRDLIADSNPMVVANAVAALSEISESHPNSNLLDL  199 (591)
T ss_dssp             HHHHHHHSSCSCHHHHHHHHHHHHHHHHSSCCCH---HHHHHHHHHHHTTSCSCHHHHHHHHHHHHHHTTSCCSCCSCCC
T ss_pred             HHHHHHHcCCCChHHHHHHHHHHHHHHhhChhhc---ccccHHHHHHHHhCCCChhHHHHHHHHHHHHHhhCCCccchhc
Confidence            5668889999999999999999999987655432   23567899999999999999999999999998875422 1111


Q ss_pred             hcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC----C
Q 017249          149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS----S  224 (375)
Q Consensus       149 ~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~----~  224 (375)
                      ..+.+..|+..+.+.++-.+...+.+|..++..++.  .  ....++.+..++.+.  +..+...|++++..+..    +
T Consensus       200 ~~~~~~~Ll~~l~~~~~~~q~~il~~l~~l~~~~~~--~--~~~~l~~l~~~l~~~--~~~V~~ea~~~i~~l~~~~~~~  273 (591)
T 2vgl_B          200 NPQNINKLLTALNECTEWGQIFILDCLSNYNPKDDR--E--AQSICERVTPRLSHA--NSAVVLSAVKVLMKFLELLPKD  273 (591)
T ss_dssp             HHHHHHHHHHHHHHCCHHHHHHHHHHHHTSCCCSHH--H--HHHHHHHHTTCSCSS--TTHHHHHHHHHHHHSCCSCCBT
T ss_pred             cHHHHHHHHHcCCCCCchHHHHHHHHHHHhCCCChH--H--HHHHHHHHHHHHcCC--ChHHHHHHHHHHHHHhhccCCC
Confidence            234567788888888888888888888877643221  1  123556666667654  34677888899888864    2


Q ss_pred             hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc-----------------HHHH----HHHH---Hc--
Q 017249          225 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR-----------------DKYR----QLIL---KE--  278 (375)
Q Consensus       225 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~-----------------~~~~----~~l~---~~--  278 (375)
                      ++....+.  ....+.|+.++. +++.+|..|+..|..++...+                 ...+    +.+.   ..  
T Consensus       274 ~~~~~~~~--~~~~~~L~~L~~-~d~~vr~~aL~~l~~i~~~~p~~~~~~~~~~~~~~~d~~~Ir~~al~~L~~l~~~~n  350 (591)
T 2vgl_B          274 SDYYNMLL--KKLAPPLVTLLS-GEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKLDIMIRLASQAN  350 (591)
T ss_dssp             TBSHHHHH--HHTHHHHHHHTT-SCHHHHHHHHHHHHHHHHHCCSTTTTCTTTTSCCTTSCHHHHHHHHHHHHHTCCSST
T ss_pred             HHHHHHHH--HHHHHHHHHHhc-CCccHHHHHHHHHHHHHHhChHHHHHHHHhheeccCChHHHHHHHHHHHHHHCChhh
Confidence            33333333  245666665554 667788888888877754211                 1111    1111   11  


Q ss_pred             --CChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          279 --GAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       279 --g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                        .+++.|..++.+.++..+..+++.+..|+...+.  .....++.|+..+.  ..| ......+...++.+++.
T Consensus       351 v~~iv~~L~~~l~~~d~~~r~~~v~aI~~la~~~~~--~~~~~v~~Ll~ll~--~~~-~~v~~e~i~~l~~ii~~  420 (591)
T 2vgl_B          351 IAQVLAELKEYATEVDVDFVRKAVRAIGRCAIKVEQ--SAERCVSTLLDLIQ--TKV-NYVVQEAIVVIRDIFRK  420 (591)
T ss_dssp             HHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHTTCHH--HHHHHHHHHHHHHH--TCC-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhChh--HHHHHHHHHHHHHc--ccc-hHHHHHHHHHHHHHHHH
Confidence              1455666677788999999999999999987642  23557788887775  334 55555666677777654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.25  E-value=8.7e-10  Score=113.64  Aligned_cols=318  Identities=10%  Similarity=0.109  Sum_probs=208.9

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-H
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-V  104 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-~  104 (375)
                      .++.+...+.+.++..+..|+.++..++....+....... ..+++.|+..+.++++.++..++++|+.++......- .
T Consensus       370 l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~~  448 (861)
T 2bpt_A          370 VLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESIDP  448 (861)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSCT
T ss_pred             HHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhcCC
Confidence            4455556667889999999999999999765112221122 2468889999999999999999999999986321100 0


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHH--HhcCChHHHHHHhccCC--HHHHHHHHHHHHHh
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAI--AASGAAPLLVQILHSGS--VQGRVDAVTALHYL  178 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i--~~~~~l~~L~~lL~~~~--~~~~~~a~~~L~~L  178 (375)
                      .-.-...++.|+..+.+. +.++..++++|.+++.....  ...+  .-...++.|++++.+.+  ..++..++.++..+
T Consensus       449 ~~~~~~~l~~l~~~l~~~-~~v~~~a~~al~~l~~~~~~~~~~~l~~~~~~il~~L~~~l~~~d~~~~vr~~a~~al~~l  527 (861)
T 2bpt_A          449 QQHLPGVVQACLIGLQDH-PKVATNCSWTIINLVEQLAEATPSPIYNFYPALVDGLIGAANRIDNEFNARASAFSALTTM  527 (861)
T ss_dssp             TTTHHHHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHHSSSSSCGGGGGHHHHHHHHHHHHTCSCCGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHhCcCcchHHHHHHHHHHHHH
Confidence            001123467888888775 89999999999998765220  1111  11345778888887544  67899999999998


Q ss_pred             ccCCC-CchhhhhcCCcHHHHHHhhhc-------------ccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHH
Q 017249          179 STCKE-NSSPILDATAVPPLINLLKDC-------------KKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVE  243 (375)
Q Consensus       179 ~~~~~-~~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~  243 (375)
                      ..... ...... ...++.++..+...             .....++..++.+|.+++.. +.......  ...++.++.
T Consensus       528 ~~~~~~~~~~~~-~~l~~~l~~~l~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~--~~l~~~l~~  604 (861)
T 2bpt_A          528 VEYATDTVAETS-ASISTFVMDKLGQTMSVDENQLTLEDAQSLQELQSNILTVLAAVIRKSPSSVEPVA--DMLMGLFFR  604 (861)
T ss_dssp             HHHCCGGGHHHH-HHHHHHHHHHHHHHTTSCGGGCCHHHHHHHHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHHHHH
T ss_pred             HHHcchhhHHHH-HHHHHHHHHHHHHHHhhhcccCChhhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHH--HHHHHHHHH
Confidence            85432 222222 23566677666532             11234566788888887753 22222222  246777888


Q ss_pred             HhccCCh-HHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhH
Q 017249          244 TVEDGSL-VSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVL  320 (375)
Q Consensus       244 lL~~~~~-~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~  320 (375)
                      .+.+.+. .+++.++.++..++..........+  ..+++.|...+.+.++.++..|..++..+........  .-..++
T Consensus       605 ~l~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~l--~~i~~~l~~~l~~~~~~vr~~a~~~l~~l~~~~~~~~~~~~~~l~  682 (861)
T 2bpt_A          605 LLEKKDSAFIEDDVFYAISALAASLGKGFEKYL--ETFSPYLLKALNQVDSPVSITAVGFIADISNSLEEDFRRYSDAMM  682 (861)
T ss_dssp             HHHSTTGGGTHHHHHHHHHHHHHHHGGGGHHHH--HHHHHHHHHHHHCTTSHHHHHHHHHHHHHHHHTGGGGHHHHHHHH
T ss_pred             HHccCCCCcHHHHHHHHHHHHHHHHhhhHHHHH--HHHHHHHHHHhccccHHHHHHHHHHHHHHHHHhchhccchHHHHH
Confidence            8887766 8899999999988765433333222  3478888888888889999999999998876554322  234577


Q ss_pred             HHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          321 EKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       321 ~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      +.++..+... +..+..+..+..++..+...
T Consensus       683 ~~l~~~l~~~-~~~~~vr~~~~~~l~~l~~~  712 (861)
T 2bpt_A          683 NVLAQMISNP-NARRELKPAVLSVFGDIASN  712 (861)
T ss_dssp             HHHHHHHHCT-TCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCCc-cccHhhhHHHHHHHHHHHHH
Confidence            7777766532 11256778888888777654

>2bpt_A Importin beta-1 subunit; nuclear transport, nucleocytoplasmic transport, nuclear trafficking, importin- beta, complex; 1.99A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 2bku_B 3ea5_B* 3nd2_A

Probab=99.23  E-value=3.6e-09  Score=109.05  Aligned_cols=316  Identities=14%  Similarity=0.118  Sum_probs=213.5

Q ss_pred             hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhH--HHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC
Q 017249           25 ALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTR--SEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        25 ~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~--~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~   99 (375)
                      +.++.|+..+.++ ++..+..++.++..++..-.++.+  ... -...++.++..+.++  +.+++..++++|..+...-
T Consensus       134 ~ll~~L~~~l~~~~~~~~r~~al~~l~~l~~~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~vr~~al~~l~~~~~~~  212 (861)
T 2bpt_A          134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSS-SNNILIAIVQGAQSTETSKAVRLAALNALADSLIFI  212 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHcCChhhhHHHHH-HHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH
Confidence            5678888888887 899999999999999875411211  000 112466777888877  8999999999999875321


Q ss_pred             hhhH-HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249          100 ERNK-VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus       100 ~~~r-~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      ...- ........++.|...+.+.++.++..++.+|..++....  ....+ ....++.+...+.+.+..++..++..+.
T Consensus       213 ~~~~~~~~~~~~ll~~l~~~~~~~~~~~r~~a~~~l~~l~~~~~~~~~~~l-~~~l~~~~~~~~~~~~~~vr~~a~~~l~  291 (861)
T 2bpt_A          213 KNNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWS  291 (861)
T ss_dssp             HHHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHH
T ss_pred             HHHccChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            1110 000112246677777888899999999999999876432  12221 1266777888888889999999999998


Q ss_pred             HhccCCCC--------------chhhh---hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249          177 YLSTCKEN--------------SSPIL---DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIAITNS  234 (375)
Q Consensus       177 ~L~~~~~~--------------~~~i~---~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  234 (375)
                      .++.....              ...+.   -...++.++..+....     +...++..+..+|..++..-.  ..++  
T Consensus       292 ~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~ll~~l~~~~~d~~d~~~~~r~~a~~~L~~l~~~~~--~~~~--  367 (861)
T 2bpt_A          292 TICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCG--NHIL--  367 (861)
T ss_dssp             HHHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHG--GGGH--
T ss_pred             HHHHHHHhhhhhhhhccCCchhhHHHHHHHHHHHHHHHHHHHHhcccccccccCcHHHHHHHHHHHHHHHcc--HhHH--
Confidence            88753110              01111   1346777777776421     122567778888888875322  2222  


Q ss_pred             cCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh--
Q 017249          235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE--  312 (375)
Q Consensus       235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~--  312 (375)
                      ...++.+...+.+.+...++.|+.+|..++.+..++...... ..+++.|+..+.+.++.+|..++++|..++..-..  
T Consensus       368 ~~l~~~l~~~l~~~~~~~r~~a~~~l~~i~~~~~~~~~~~~l-~~il~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~  446 (861)
T 2bpt_A          368 EPVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYYV-HQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESI  446 (861)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHHH-HHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHcCCCChhHHHHHHHHHHHHHcCCCHHHHHHHH-HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhhhhc
Confidence            245666777777888899999999999999775322222222 35788899999999999999999999998865422  


Q ss_pred             --hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          313 --KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       313 --~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                        ...-..+++.++..+.   +. ++.+..|..++..+.+.
T Consensus       447 ~~~~~~~~~l~~l~~~l~---~~-~~v~~~a~~al~~l~~~  483 (861)
T 2bpt_A          447 DPQQHLPGVVQACLIGLQ---DH-PKVATNCSWTIINLVEQ  483 (861)
T ss_dssp             CTTTTHHHHHHHHHHHHT---SC-HHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhc---cC-hHHHHHHHHHHHHHHHh
Confidence              2234557787877664   33 78888999999888764

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.23  E-value=3.4e-11  Score=121.02  Aligned_cols=196  Identities=19%  Similarity=0.108  Sum_probs=148.3

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHhhcc-Ch
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVR-NE  100 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L~~~-~~  100 (375)
                      ....+.++++.|+|++++.|..|+++|.+++.+  +.++..+...|+|..++ .+|.+++.+++..|+++|+||+.+ .+
T Consensus        32 ~~~~i~Pll~~L~S~~~~~r~~A~~al~~l~~~--~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~  109 (684)
T 4gmo_A           32 REDKILPVLKDLKSPDAKSRTTAAGAIANIVQD--AKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEA  109 (684)
T ss_dssp             HHHTTHHHHHHHSSSCCSHHHHHHHHHHHHTTS--HHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCH
T ss_pred             chhhHHHHHHHcCCCCHHHHHHHHHHHHHHHcC--cHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCc
Confidence            345567788999999999999999999999975  48999999999988765 578889999999999999999965 46


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCC---------------------hHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHH
Q 017249          101 RNKVKIATAGAIPPLVELLKFQN---------------------GTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQ  158 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~---------------------~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~  158 (375)
                      +.+..++..|++++|..++++..                     .++...++.+|++|+.... ....+...+.++.|+.
T Consensus       110 d~~~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~  189 (684)
T 4gmo_A          110 DFCVHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLF  189 (684)
T ss_dssp             HHHHHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHH
T ss_pred             hHHHHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHH
Confidence            78899999999999999885311                     1344567889999987654 4456667788999999


Q ss_pred             HhccC---CHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHh--hhcccchHHHHHHHHHHHHhh
Q 017249          159 ILHSG---SVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLL--KDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       159 lL~~~---~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll--~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      .|.+.   ...++..|+.+|++|+.++ +....+.+.+....+..++  .....  ..+..++++|.|+.
T Consensus       190 ~L~~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~~~~~~~~~~~ll~~~~~~~--~~~~la~giL~Ni~  257 (684)
T 4gmo_A          190 RLISADIAPQDIYEEAISCLTTLSEDNLKVGQAITDDQETHVYDVLLKLATGTD--PRAVMACGVLHNVF  257 (684)
T ss_dssp             HHHHHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHHTCCSSCHHHHHHHHHHSSC--TTHHHHHHHHHHHH
T ss_pred             HHHhcCCCcHHHHHHHHHHHHHHhccCHHHHHHHHhcchHHHHHHHHHHhcCCc--HHHHHHHHHHHhHh
Confidence            88543   3678999999999999775 4455555555433222222  22222  23456788888874

>1ibr_B P95, importin beta-1 subunit, nuclear factor; small GTPase, nuclear transport receptor, cell cycle, translation; HET: GNP; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1m5n_S 1gcj_A 1f59_A 1o6o_A 1o6p_A

Probab=99.22  E-value=5.6e-10  Score=106.52  Aligned_cols=310  Identities=12%  Similarity=0.086  Sum_probs=207.3

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccC-hhhH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRN-ERNK  103 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~-~~~r  103 (375)
                      -..++..|.++++.+ ..++.+|..++....+..    ...+.++.|++.+.++  ++.++..++.+|..++.+. ++.-
T Consensus        92 k~~ll~~l~~~~~~v-~~~~~~i~~ia~~~~~~~----~w~~ll~~L~~~l~~~~~~~~~r~~al~~l~~l~~~~~~~~~  166 (462)
T 1ibr_B           92 KNYVLQTLGTETYRP-SSASQCVAGIACAEIPVN----QWPELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDPEQL  166 (462)
T ss_dssp             HHHHHHHTTCCCSSS-CSHHHHHHHHHHHHGGGT----CCTTHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCGGGT
T ss_pred             HHHHHHHhCCCCchh-hHHHHHHHHHHHHhcccc----ccHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHhCCchhh
Confidence            345777777777777 778888888887641110    1236789999999888  8999999999999999743 2211


Q ss_pred             HHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhccCC-C-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249          104 VKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSAAAP-N-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS  179 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~-~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~  179 (375)
                      ... ....++.++..+.+.  ++.+|..|+.++.++...-+ . .......-.++.+...+.+++..++..++.+|..++
T Consensus       167 ~~~-~~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~vr~~~~~~l~~l~  245 (462)
T 1ibr_B          167 QDK-SNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIM  245 (462)
T ss_dssp             GGG-HHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             HhH-HHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            111 123577888899887  78999999999999754311 0 000011113566667778888999999999999988


Q ss_pred             cCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhH------------------HHhh--ccCcH
Q 017249          180 TCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRI------------------AITN--SDGGI  238 (375)
Q Consensus       180 ~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~------------------~~~~--~~g~v  238 (375)
                      ... +.....+..++++.++..+.+.  ++.++..++..+..++.......                  .++.  -...+
T Consensus       246 ~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~v~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  323 (462)
T 1ibr_B          246 SLYYQYMETYMGPALFAITIEAMKSD--IDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLV  323 (462)
T ss_dssp             HHCGGGCTTTTTTTHHHHHHHHHHCS--SHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHcCC--chHHHHHHHHHHHHHHHHHHHHHHhcccccccCCCccchhHHHHHHHhhhcc
Confidence            542 2111112215666666666554  45678888888888875431110                  0110  02345


Q ss_pred             HHHHHHhcc-------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          239 LTLVETVED-------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       239 ~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +.++..+.+       .+...+..|+.+|..++...+.    .+ -..+++.+...+.+.++.+|+.|..+|..++....
T Consensus       324 p~l~~~l~~~d~d~~~~~~~~r~~a~~~L~~l~~~~~~----~~-~~~~~~~l~~~l~~~~~~~r~aal~~l~~l~~~~~  398 (462)
T 1ibr_B          324 PILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED----DI-VPHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPE  398 (462)
T ss_dssp             HHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT----TH-HHHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSC
T ss_pred             HHHHHHHHhcccccccccchHHHHHHHHHHHHHHhccH----HH-HHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCCc
Confidence            566666643       2346888999999998876421    11 13566777788888999999999999999997653


Q ss_pred             hh---hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          312 EK---RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       312 ~~---~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      ..   -.-..+++.++..|.   +..+..+..|..+|..+....
T Consensus       399 ~~~~~~~l~~~~~~l~~~l~---d~~~~Vr~~a~~~l~~~~~~~  439 (462)
T 1ibr_B          399 PSQLKPLVIQAMPTLIELMK---DPSVVVRDTAAWTVGRICELL  439 (462)
T ss_dssp             TTTTCTTTTTHHHHHHHGGG---CSCHHHHHHHHHHHHHHHHHG
T ss_pred             HHHHHHHHHHHHHHHHHHhc---CCCHHHHHHHHHHHHHHHHhc
Confidence            21   122568888887774   566999999999999998653

>1qgr_A Protein (importin beta subunit); transport receptor, nuclear import, heat motif, NLS-binding; 2.30A {Homo sapiens} SCOP: a.118.1.1 PDB: 1qgk_A 2p8q_A 2q5d_A 3lww_A 1ukl_A 2qna_A

Probab=99.19  E-value=7.5e-10  Score=114.34  Aligned_cols=316  Identities=12%  Similarity=0.091  Sum_probs=205.2

Q ss_pred             HhHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh
Q 017249           24 QALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      ...++.++..+.++  +++++..|++++..++..- +.+.. .......++.+.+.+.+.+.+++..++.+|..++...+
T Consensus       171 ~~ll~~l~~~l~~~~~~~~vr~~a~~~l~~~~~~~-~~~~~~~~~~~~il~~l~~~~~~~~~~vr~~a~~~l~~l~~~~~  249 (876)
T 1qgr_A          171 NEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYY  249 (876)
T ss_dssp             HHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSG
T ss_pred             HHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHHHHH-HHHHHhHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhH
Confidence            34566677777765  6899999999999987653 22111 11111257777888888899999999999999997655


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-------------------CChhHH--HhcCChHHHHHH
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-------------------PNKPAI--AASGAAPLLVQI  159 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-------------------~~~~~i--~~~~~l~~L~~l  159 (375)
                      ..-...+....++.++..+.+.++.++..++..+.+++...                   ......  .-...++.++..
T Consensus       250 ~~~~~~~~~~l~~~~~~~~~~~~~~v~~~al~~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~ll~~  329 (876)
T 1qgr_A          250 QYMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQT  329 (876)
T ss_dssp             GGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHhHhhhhccccccCCCccchhHHHHHHHHHHHhHHHHHH
Confidence            43233333467888888888888999999999888887531                   011111  013456677777


Q ss_pred             hcc-------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh--hhhHH
Q 017249          160 LHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE--EGRIA  230 (375)
Q Consensus       160 L~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~  230 (375)
                      +..       .+..++..++.+|..++....  ..++ ..+++.+...+.+.  +..+++.++.++..++...  +....
T Consensus       330 l~~~~~d~~~~~~~~r~~a~~~l~~l~~~~~--~~~~-~~~l~~l~~~l~~~--~~~~r~~a~~~l~~i~~~~~~~~~~~  404 (876)
T 1qgr_A          330 LTKQDENDDDDDWNPCKAAGVCLMLLATCCE--DDIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKP  404 (876)
T ss_dssp             TTCCCSSCCTTCCCHHHHHHHHHHHHHHHHG--GGGH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHHHHH
T ss_pred             hhcccccccccccHHHHHHHHHHHHHHHHCc--HhhH-HHHHHHHHHHccCC--ChHHHHHHHHHHHHHHcCCCHHHHHH
Confidence            752       245678888889888875422  1122 23555566666554  4578899999999998753  22223


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH--HHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY--RQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~--~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      .+  ...++.++..+.++++.+|..|+++|.+++....+..  ...  -..+++.|+..+.+ ++.+++.|+++|..++.
T Consensus       405 ~~--~~~l~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~~~~~~~~--l~~~l~~l~~~l~~-~~~v~~~a~~al~~l~~  479 (876)
T 1qgr_A          405 LV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEAAINDVY--LAPLLQCLIEGLSA-EPRVASNVCWAFSSLAE  479 (876)
T ss_dssp             HH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTSSTTT--HHHHHHHHHHHTTS-CHHHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCchhcccHHH--HHHHHHHHHHHHcC-CHHHHHHHHHHHHHHHH
Confidence            33  3588899999999999999999999999987642210  011  13466777777766 49999999999999875


Q ss_pred             CCh--------------h--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          309 TPQ--------------E--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       309 ~~~--------------~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      ...              .  .-.-..+++.|+..+..........+..+..++..+.+
T Consensus       480 ~~~~~~~~~~~~~~~~~~~l~~~~~~il~~L~~~l~~~~~~~~~~r~~~~~~l~~l~~  537 (876)
T 1qgr_A          480 AAYEAADVADDQEEPATYCLSSSFELIVQKLLETTDRPDGHQNNLRSSAYESLMEIVK  537 (876)
T ss_dssp             HHHHTTSCTTSCCCCCCCSSTTTHHHHHHHHHHHTTSCSSCSTTHHHHHHHHHHHHHH
T ss_pred             HhhhccccccccccccchhhhHhHHHHHHHHHHHHhCcCcchhhHHHHHHHHHHHHHH
Confidence            422              1  11224567777666542211123444555555555543

>4gmo_A Putative uncharacterized protein; ARM, heat, solenoid, nuclear transport, chaperone, RPL5, RPL KAP104, nucleus; 2.10A {Chaetomium thermophilum var} PDB: 4gmn_A

Probab=99.14  E-value=2.9e-10  Score=114.22  Aligned_cols=195  Identities=14%  Similarity=0.105  Sum_probs=147.6

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHH-HhhcCCChHHHHHHHHHHHHhhccCC--Ch
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAP--NK  144 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~  144 (375)
                      ..+.++++.|++++++.|..|+++|.+|+. ++..+..+...+++..++ .+|.+++.+++..|+++|.||+....  ..
T Consensus        34 ~~i~Pll~~L~S~~~~~r~~A~~al~~l~~-~~~~~~l~~~~~~v~~ll~~lL~D~~~~Vr~~A~gaLrnL~~~~g~d~~  112 (684)
T 4gmo_A           34 DKILPVLKDLKSPDAKSRTTAAGAIANIVQ-DAKCRKLLLREQVVHIVLTETLTDNNIDSRAAGWEILKVLAQEEEADFC  112 (684)
T ss_dssp             HTTHHHHHHHSSSCCSHHHHHHHHHHHHTT-SHHHHHHHHHTTHHHHHHHTTTTCSCHHHHHHHHHHHHHHHHHSCHHHH
T ss_pred             hhHHHHHHHcCCCCHHHHHHHHHHHHHHHc-CcHHHHHHHHcCCHHHHHHHHcCCCCHHHHHHHHHHHHHHHhhcCchHH
Confidence            346678889999999999999999999997 788999999999988765 56888899999999999999998753  45


Q ss_pred             hHHHhcCChHHHHHHhccCC---------------------HHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHHHHhh
Q 017249          145 PAIAASGAAPLLVQILHSGS---------------------VQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLINLLK  202 (375)
Q Consensus       145 ~~i~~~~~l~~L~~lL~~~~---------------------~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv~ll~  202 (375)
                      ..+...|++++|..++++..                     ..+...++.+|++|+... +....+...+.++.|+..+.
T Consensus       113 ~~l~~~~il~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lL~~L~e~s~~~~~~v~~~~~l~~l~~~L~  192 (684)
T 4gmo_A          113 VHLYRLDVLTAIEHAAKAVLETLTTSEPPFSKLLKAQQRLVWDITGSLLVLIGLLALARDEIHEAVATKQTILRLLFRLI  192 (684)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHCBTTBGGGSCHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHcChHHHHHHHHHhhHHHHhhhccccccccHHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHhcccHHHHHHHHH
Confidence            66778899999999885311                     124556888999999654 45567777899999999886


Q ss_pred             hcc-cchHHHHHHHHHHHHhhCCh-hhhHHHhhccCcH--HHHHHHhccCChHHHHHHHHHHHHhc
Q 017249          203 DCK-KYSKFAEKATALLEILSSSE-EGRIAITNSDGGI--LTLVETVEDGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       203 ~~~-~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v--~~Lv~lL~~~~~~~~~~a~~~L~~l~  264 (375)
                      +.. ....+...++.+|.+++.+. .....+. +.+..  ..++-.+...+...+..++++|.|+.
T Consensus       193 ~~~~~~~~v~~~a~~~L~~ls~dn~~~~~~i~-~~~~~~~~~~ll~~~~~~~~~~~la~giL~Ni~  257 (684)
T 4gmo_A          193 SADIAPQDIYEEAISCLTTLSEDNLKVGQAIT-DDQETHVYDVLLKLATGTDPRAVMACGVLHNVF  257 (684)
T ss_dssp             HHCCSCHHHHHHHHHHHHHHHTTCHHHHHHHH-TCCSSCHHHHHHHHHHSSCTTHHHHHHHHHHHH
T ss_pred             hcCCCcHHHHHHHHHHHHHHhccCHHHHHHHH-hcchHHHHHHHHHHhcCCcHHHHHHHHHHHhHh
Confidence            543 34478889999999999864 4444454 44432  22222233344556778999999874

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.11  E-value=4.7e-09  Score=104.33  Aligned_cols=287  Identities=11%  Similarity=0.046  Sum_probs=185.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..+.+-|+++++.++..|+++|.++...   +..     ...++.+.++|.+.++.++..|+.++.++...+++..  
T Consensus       108 ~in~l~kDL~~~n~~vr~lAL~~L~~i~~~---~~~-----~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~~v--  177 (618)
T 1w63_A          108 MTNCIKNDLNHSTQFVQGLALCTLGCMGSS---EMC-----RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPELM--  177 (618)
T ss_dssp             HHHHHHHHHSCSSSHHHHHHHHHHHHHCCH---HHH-----HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGGGG--
T ss_pred             HHHHHHHhcCCCCHhHHHHHHHHHHhcCCH---HHH-----HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChHHH--
Confidence            345556666677778888888888777632   221     2347788889999999999999999999998666432  


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc---------------CCHHHHHH
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS---------------GSVQGRVD  170 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~---------------~~~~~~~~  170 (375)
                         .+.++.+..+|.+.++.++..|+.+|..++..++.. .-.-...++.++.+|.+               .++-.+..
T Consensus       178 ---~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~-~~~~~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~  253 (618)
T 1w63_A          178 ---EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM-LAHFRKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVR  253 (618)
T ss_dssp             ---GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH-HHHHHTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHH
T ss_pred             ---HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHH
Confidence               267888889998899999999999999997653211 11123678888887763               36777888


Q ss_pred             HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhc----ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc
Q 017249          171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDC----KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE  246 (375)
Q Consensus       171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~----~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~  246 (375)
                      .+.+|..++..+..    .....++.|..++...    +....+...|..++..+...+..+      ..++..|..+|.
T Consensus       254 il~~L~~l~~~~~~----~~~~~~~~L~~l~~~~~~~~~~~~aV~~ea~~~i~~l~~~~~l~------~~a~~~L~~~L~  323 (618)
T 1w63_A          254 ILRLLRILGRNDDD----SSEAMNDILAQVATNTETSKNVGNAILYETVLTIMDIKSESGLR------VLAINILGRFLL  323 (618)
T ss_dssp             HHHHHHHHTTTCHH----HHHTTHHHHHHHHHTSCCSSTHHHHHHHHHHHHHHHSCCCHHHH------HHHHHHHHHHHT
T ss_pred             HHHHHHHhCCCCHH----HHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhcCCCHHHH------HHHHHHHHHHHh
Confidence            89999988865321    1123445555555321    112245566777777765443221      135677778888


Q ss_pred             cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHH
Q 017249          247 DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYD  326 (375)
Q Consensus       247 ~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~  326 (375)
                      ++++.++..|+.+|..++... +.    ++ ......++..+.+.++.+|..|..+|..++....-    ..+++.|+..
T Consensus       324 ~~d~~vr~~aL~~L~~i~~~~-p~----~~-~~~~~~i~~~l~d~d~~Ir~~alelL~~l~~~~nv----~~iv~eL~~~  393 (618)
T 1w63_A          324 NNDKNIRYVALTSLLKTVQTD-HN----AV-QRHRSTIVDCLKDLDVSIKRRAMELSFALVNGNNI----RGMMKELLYF  393 (618)
T ss_dssp             CSSTTTHHHHHHHHHHHHHHH-HH----HH-GGGHHHHHHGGGSSCHHHHHHHHHHHHHHCCSSST----HHHHHHHHHH
T ss_pred             CCCCchHHHHHHHHHHHHhhC-HH----HH-HHHHHHHHHHccCCChhHHHHHHHHHHHHcccccH----HHHHHHHHHH
Confidence            778888888888888887643 21    12 22445666777777788888888888777765421    1234445544


Q ss_pred             HhhcCCChHHHHHHHHHHHHHHH
Q 017249          327 IAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       327 l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      +..   .+...+..+...+..+.
T Consensus       394 l~~---~d~e~r~~~v~~I~~la  413 (618)
T 1w63_A          394 LDS---CEPEFKADCASGIFLAA  413 (618)
T ss_dssp             HHH---CCHHHHHHHHHHHHHHH
T ss_pred             HHh---CCHHHHHHHHHHHHHHH
Confidence            431   22455555555555543

>1w63_A Adapter-related protein complex 1 gamma 1 subunit; endocytosis, clathrin adaptor, transport, coated PITS; 4.0A {Mus musculus} SCOP: i.23.1.1

Probab=99.06  E-value=1.8e-08  Score=100.19  Aligned_cols=289  Identities=15%  Similarity=0.052  Sum_probs=199.5

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      +....++++.+++.+.|.-.--.+..++..+ ++..- +    ++..|.+-|.++++.++..|+++|+++..  ++.-  
T Consensus        71 ~~~~vik~~~s~~~~~Krl~Yl~~~~~~~~~-~e~~~-l----~in~l~kDL~~~n~~vr~lAL~~L~~i~~--~~~~--  140 (618)
T 1w63_A           71 GQLECLKLIASQKFTDKRIGYLGAMLLLDER-QDVHL-L----MTNCIKNDLNHSTQFVQGLALCTLGCMGS--SEMC--  140 (618)
T ss_dssp             GHHHHHHHHHSSSHHHHHHHHHHHHHHCCCC-HHHHH-H----HHHHHHHHHSCSSSHHHHHHHHHHHHHCC--HHHH--
T ss_pred             hHHHHHHHHcCCchHHHHHHHHHHHHHhCCC-cHHHH-H----HHHHHHHhcCCCCHhHHHHHHHHHHhcCC--HHHH--
Confidence            4556666677777777777777777777665 32211 1    36778888899999999999999999984  3221  


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCC-
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKEN-  184 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~-  184 (375)
                         ...++.+..+|.+.++.+|..|+.++.++....+.  . . .+.++.+.++|.+.++.++..|+.+|..++..+.. 
T Consensus       141 ---~~l~~~l~~~L~~~~~~VRk~A~~al~~l~~~~p~--~-v-~~~~~~l~~lL~D~d~~V~~~Al~~L~~i~~~~~~~  213 (618)
T 1w63_A          141 ---RDLAGEVEKLLKTSNSYLRKKAALCAVHVIRKVPE--L-M-EMFLPATKNLLNEKNHGVLHTSVVLLTEMCERSPDM  213 (618)
T ss_dssp             ---HHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHHCGG--G-G-GGGGGGTTTSTTCCCHHHHHHHHHHHHHHCCSHHHH
T ss_pred             ---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHChH--H-H-HHHHHHHHHHhCCCCHhHHHHHHHHHHHHHHhChHH
Confidence               24577899999999999999999999999874331  1 1 36788888999999999999999999999865321 


Q ss_pred             chhhhhcCCcHHHHHHhhhc-------------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-----
Q 017249          185 SSPILDATAVPPLINLLKDC-------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-----  246 (375)
Q Consensus       185 ~~~i~~~g~i~~Lv~ll~~~-------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-----  246 (375)
                      ...+  ...++.++++|.+-             ..++-.+...+.+|..++.......     ....+.|..++.     
T Consensus       214 ~~~~--~~~v~~l~~~L~~~~~~~~~~~~~~~~~~~~~~q~~il~~L~~l~~~~~~~~-----~~~~~~L~~l~~~~~~~  286 (618)
T 1w63_A          214 LAHF--RKLVPQLVRILKNLIMSGYSPEHDVSGISDPFLQVRILRLLRILGRNDDDSS-----EAMNDILAQVATNTETS  286 (618)
T ss_dssp             HHHH--HTTHHHHHHHHHHHHHSCCCTTTCSSSSSCHHHHHHHHHHHHHHTTTCHHHH-----HTTHHHHHHHHHTSCCS
T ss_pred             HHHH--HHHHHHHHHHHHHHHcCCCCccccccCCCCChHHHHHHHHHHHhCCCCHHHH-----HHHHHHHHHHHhccccc
Confidence            1111  25788888877641             1234455667888888886432211     133444444442     


Q ss_pred             -cCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHH
Q 017249          247 -DGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVY  325 (375)
Q Consensus       247 -~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~  325 (375)
                       +.+..+...|+.++..+...  +..+     ..+++.|..++.+.++.+|..|..+|..+....+.. +.. ....++.
T Consensus       287 ~~~~~aV~~ea~~~i~~l~~~--~~l~-----~~a~~~L~~~L~~~d~~vr~~aL~~L~~i~~~~p~~-~~~-~~~~i~~  357 (618)
T 1w63_A          287 KNVGNAILYETVLTIMDIKSE--SGLR-----VLAINILGRFLLNNDKNIRYVALTSLLKTVQTDHNA-VQR-HRSTIVD  357 (618)
T ss_dssp             STHHHHHHHHHHHHHHHSCCC--HHHH-----HHHHHHHHHHHTCSSTTTHHHHHHHHHHHHHHHHHH-HGG-GHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhcCCC--HHHH-----HHHHHHHHHHHhCCCCchHHHHHHHHHHHHhhCHHH-HHH-HHHHHHH
Confidence             23457788899999887542  2222     246788889999999999999999999998765432 211 3334544


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          326 DIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       326 ~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      .+.   +.....+.+|..+|..+..
T Consensus       358 ~l~---d~d~~Ir~~alelL~~l~~  379 (618)
T 1w63_A          358 CLK---DLDVSIKRRAMELSFALVN  379 (618)
T ss_dssp             GGG---SSCHHHHHHHHHHHHHHCC
T ss_pred             Hcc---CCChhHHHHHHHHHHHHcc
Confidence            443   4447788888888777753

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=99.02  E-value=8.1e-09  Score=110.73  Aligned_cols=308  Identities=12%  Similarity=0.066  Sum_probs=200.2

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH-
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK-  103 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r-  103 (375)
                      ..++.++..|.+.++++|..|+.+|..++...++....     .+++.|+..|.++++.+|..++.+|..++....... 
T Consensus        48 ~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~~~~~-----~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~  122 (1230)
T 1u6g_C           48 KVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASS  122 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCHHHHH-----HHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCccc
Confidence            56888999999999999999999999999776232222     347788888888888999999999999886433220 


Q ss_pred             ----HHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249          104 ----VKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus       104 ----~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                          ..-.-...+|.|+..+. +.++.++..|+.++..++.....  ...  ....++.|+..|.+++..++..|+.+|.
T Consensus       123 ~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~~~~~~~~~l~~~--~~~ll~~l~~~L~~~~~~vR~~a~~al~  200 (1230)
T 1u6g_C          123 GSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNF--HPSILTCLLPQLTSPRLAVRKRTIIALG  200 (1230)
T ss_dssp             -CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTT--HHHHHHHHGGGGGCSSHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhHhHHHHH--HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence                11122356889999998 57899999999999998854221  111  1346777888888889999999999999


Q ss_pred             HhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          177 YLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       177 ~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      .++...+..  + -...++.++..+.+... ..++..++.++..++.. +..-...  -...++.++..+.+.++.+|..
T Consensus       201 ~l~~~~~~~--~-~~~~l~~l~~~L~~~~~-~~~r~~a~~~l~~l~~~~~~~~~~~--l~~l~~~ll~~l~d~~~~vR~~  274 (1230)
T 1u6g_C          201 HLVMSCGNI--V-FVDLIEHLLSELSKNDS-MSTTRTYIQCIAAISRQAGHRIGEY--LEKIIPLVVKFCNVDDDELREY  274 (1230)
T ss_dssp             HHTTTC-------CTTHHHHHHHHHHHTCS-SCSCTTHHHHHHHHHHHSSGGGTTS--CTTHHHHHHHHHSSCCTTTHHH
T ss_pred             HHHHhcCHH--H-HHHHHHHHHHHhccCCc-hhHHHHHHHHHHHHHHHhHHHHHHH--HHHHHHHHHHHhcCCCHHHHHH
Confidence            998653221  1 12467888888876532 23345567777766642 2211111  1467888999998888889999


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-------------------------------------hCCHHHHHH
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-------------------------------------EGTFEAQER  298 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-------------------------------------~~~~~~~~~  298 (375)
                      ++.++..++...+.+....+  ..+++.++..+.                                     +....+|+.
T Consensus       275 a~~~l~~l~~~~~~~~~~~l--~~li~~ll~~l~~d~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~vR~~  352 (1230)
T 1u6g_C          275 CIQAFESFVRRCPKEVYPHV--STIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRA  352 (1230)
T ss_dssp             HHHHHHHHHHCTTCCCHHHH--HHHHHHHTTCCCCC------------------------------------CTTHHHHH
T ss_pred             HHHHHHHHHHHChHHHHHhH--HHHHHHHHHHhCCCCCCCCcccccccccccccccccchhhcccccccccccCHHHHHH
Confidence            99999888775432211111  223344433221                                     112457889


Q ss_pred             HHHHHHHhhcCChh--hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          299 ARTLLDLLRDTPQE--KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       299 A~~~L~~l~~~~~~--~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      |+.+|..+....+.  .-+-..+++.++..+   .+..+..+..+..++..+++
T Consensus       353 A~~~l~~l~~~~~~~~~~~~~~l~~~l~~~l---~d~~~~Vr~~a~~~l~~l~~  403 (1230)
T 1u6g_C          353 AAKCLDAVVSTRHEMLPEFYKTVSPALISRF---KEREENVKADVFHAYLSLLK  403 (1230)
T ss_dssp             HHHHHHHHHTTCCTTHHHHHTTTHHHHHSTT---SCSSSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhHHHHHHHHHHHHHHHHc---CCCchHHHHHHHHHHHHHHH
Confidence            99999988874432  111122344444333   23345666666666666654

>1u6g_C TIP120 protein, CAND1; cullin repeat, heat repeat, ring finger, ligase; 3.10A {Homo sapiens} SCOP: a.118.1.2 PDB: 4a0c_A

Probab=98.99  E-value=2.2e-09  Score=115.19  Aligned_cols=274  Identities=14%  Similarity=0.141  Sum_probs=190.5

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      ..++.++..+.++|++.+..|...|.+....++... ..-.....++.|++.|.++++++|..|+.+|..++...++  .
T Consensus         6 ~~l~~lL~~l~s~d~~~R~~A~~~L~~~l~~~~~~~-~~~~~~~il~~Ll~~L~d~~~~vR~~A~~~L~~l~~~~~~--~   82 (1230)
T 1u6g_C            6 YHISNLLEKMTSSDKDFRFMATNDLMTELQKDSIKL-DDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKE--Y   82 (1230)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSCCSC-CTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCH--H
T ss_pred             hHHHHHHHhcCCCCHhHHHHHHHHHHHHHcccccCC-ChhHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCH--H
Confidence            347788899999999999999999888765431100 0001113477899999999999999999999999865433  1


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh------hHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHH
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK------PAIAASGAAPLLVQILH-SGSVQGRVDAVTALHY  177 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~------~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~  177 (375)
                      .  -...++.|+..+.++++.+|..++.+|..++..-...      ..-.....++.|+..+. +++..++..|+.+|..
T Consensus        83 ~--~~~i~~~Ll~~l~d~~~~vR~~a~~~L~~i~~~l~~~~~~~~~~~~~~~~llp~L~~~l~~~~~~~~~~~al~~l~~  160 (1230)
T 1u6g_C           83 Q--VETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMAD  160 (1230)
T ss_dssp             H--HHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHH
T ss_pred             H--HHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhCCCcccccchHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHH
Confidence            1  1235678888888888899999999999987653321      11124567889999998 5788999999999999


Q ss_pred             hccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-hHHHHH
Q 017249          178 LSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-LVSTQH  255 (375)
Q Consensus       178 L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-~~~~~~  255 (375)
                      ++.. ++.... .-...++.++..+.+.  +..++..+..+|..++......  ++  ...++.++..|.+.+ ...+..
T Consensus       161 ~~~~~~~~l~~-~~~~ll~~l~~~L~~~--~~~vR~~a~~al~~l~~~~~~~--~~--~~~l~~l~~~L~~~~~~~~r~~  233 (1230)
T 1u6g_C          161 MLSRQGGLLVN-FHPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGNI--VF--VDLIEHLLSELSKNDSMSTTRT  233 (1230)
T ss_dssp             HHHHTCSSCTT-THHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTT
T ss_pred             HHHHhHhHHHH-HHHHHHHHHHHHHcCC--cHHHHHHHHHHHHHHHHhcCHH--HH--HHHHHHHHHHhccCCchhHHHH
Confidence            8843 221111 1133566666666654  4578899999999998653322  22  357888888886543 456677


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      ++.++..++...+.....  .-..+++.++..+.+.++.+|+.+..++..+....+.
T Consensus       234 a~~~l~~l~~~~~~~~~~--~l~~l~~~ll~~l~d~~~~vR~~a~~~l~~l~~~~~~  288 (1230)
T 1u6g_C          234 YIQCIAAISRQAGHRIGE--YLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCPK  288 (1230)
T ss_dssp             HHHHHHHHHHHSSGGGTT--SCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHhHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHChH
Confidence            888888887654221111  1146888999988888999999999999988876543

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.92  E-value=1.4e-07  Score=78.99  Aligned_cols=190  Identities=14%  Similarity=0.095  Sum_probs=150.1

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ..+.+..|+++|+..|+.++..++.+|.++...- +.......-..+++.+++++.+.+..+...|+++|..|-.+.|-.
T Consensus        31 ~e~~l~~L~~LL~dkD~~vk~raL~~LeellK~~-~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~  109 (265)
T 3b2a_A           31 DKRALFLILELAGEDDETTRLRAFVALGEILKRA-DSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMG  109 (265)
T ss_dssp             CHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBC
T ss_pred             chhHHHHHHHHHhccchHHHHHHHHHHHHHHHhc-cccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCC
Confidence            4557889999999999999999999999999885 333333333456999999999999999999999999999876666


Q ss_pred             HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                      ...+..  ....|..++.++++-.+..++..+..+......      .+.+..+..++.+.+..++..++.++-+++...
T Consensus       110 ~~~y~K--l~~aL~dlik~~~~il~~eaae~Lgklkv~~~~------~~V~~~l~sLl~Skd~~vK~agl~~L~eia~~S  181 (265)
T 3b2a_A          110 SKTFLK--AAKTLVSLLESPDDMMRIETIDVLSKLQPLEDS------KLVRTYINELVVSPDLYTKVAGFCLFLNMLNSS  181 (265)
T ss_dssp             HHHHHH--HHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCCC------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHGGGC
T ss_pred             HHHHHH--HHHHHHHHhcCCCchHHHHHHHHhCcCCcccch------HHHHHHHHHHHhCCChhHHHHHHHHHHHhhccc
Confidence            666555  256899999999999999999999999333222      355788999999999999999999999999654


Q ss_pred             CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      ++...+  .+++..+-.++.+.  ++.+++.|+.++..+...+
T Consensus       182 ~D~~i~--~~I~~eI~elL~~e--D~~l~e~aLd~Le~ils~p  220 (265)
T 3b2a_A          182 ADSGHL--TLILDEIPSLLQND--NEFIVELALDVLEKALSFP  220 (265)
T ss_dssp             SSCCCG--GGTTTTHHHHHTCS--CHHHHHHHHHHHHHHTTSC
T ss_pred             CCHHHH--HHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHcCc
Confidence            333322  12455566677776  5678899999999888764

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.90  E-value=2.4e-07  Score=91.91  Aligned_cols=292  Identities=13%  Similarity=0.087  Sum_probs=190.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      +....++.+.+++.+.|+-+--.+..++..+ ++... +    ++..+.+-|.++++-++-.|+++|+++..  ++.-. 
T Consensus        75 ~~~~vvkl~~s~~~~~Krl~YL~l~~~~~~~-~e~~~-L----~iN~l~kDl~~~n~~ir~lALr~L~~i~~--~e~~~-  145 (621)
T 2vgl_A           75 GHMEAVNLLSSNRYTEKQIGYLFISVLVNSN-SELIR-L----INNAIKNDLASRNPTFMGLALHCIANVGS--REMAE-  145 (621)
T ss_dssp             CHHHHHHGGGCSCHHHHHHHHHHHHHSCCCC-HHHHH-H----HHHHHHHHHHSCCHHHHHHHHHHHHHHCC--HHHHH-
T ss_pred             hHHHHHHHhcCCCHHHHHHHHHHHHHHccCC-cHHHH-H----HHHHHHHhcCCCCHHHHHHHHHHhhccCC--HHHHH-
Confidence            4566777778888888888888888888776 33221 2    25667777889999999999999999964  44222 


Q ss_pred             HHHcCChHHHHHhh--cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          106 IATAGAIPPLVELL--KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       106 i~~~g~i~~Lv~lL--~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                          ..++.+.+.+  .+.++.+|..|+.++.++....+  ..+...+.++.+.++|.+.++.++..|+.++..++..+.
T Consensus       146 ----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p--~~~~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~  219 (621)
T 2vgl_A          146 ----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSP--DLVPMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNP  219 (621)
T ss_dssp             ----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCG--GGCCCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCH
T ss_pred             ----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhCh--hhcCchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhCh
Confidence                3467899999  88899999999999999987433  222224889999999999999999999999999986432


Q ss_pred             CchhhhhcCCcHHHHHHhh----hccc-----------chHHHHHHHHHHHHhhCC--hhhhHHHhhccCcHHHHHHHhc
Q 017249          184 NSSPILDATAVPPLINLLK----DCKK-----------YSKFAEKATALLEILSSS--EEGRIAITNSDGGILTLVETVE  246 (375)
Q Consensus       184 ~~~~i~~~g~i~~Lv~ll~----~~~~-----------~~~~~~~a~~~L~~l~~~--~~~~~~~~~~~g~v~~Lv~lL~  246 (375)
                      .  .+  ...++.+++.|.    .+..           ++-.+-..+.+|..++..  ++.+..+.   ..+..++..+.
T Consensus       220 ~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~qi~il~ll~~~~~~~d~~~~~~l~---~~L~~il~~~~  292 (621)
T 2vgl_A          220 E--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWLSVKLLRLLQCYPPPEDPAVRGRLT---ECLETILNKAQ  292 (621)
T ss_dssp             H--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHHHHHHHHHGGGSSSCSSHHHHHHHH---HHHHHHHHHHH
T ss_pred             H--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchHHHHHHHHHHHhCCCCCHHHHHHHH---HHHHHHHHhhc
Confidence            1  11  123444444333    2111           233444466666666642  33333333   24444444332


Q ss_pred             ---------cCC--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hh
Q 017249          247 ---------DGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KR  314 (375)
Q Consensus       247 ---------~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~  314 (375)
                               +.+  ..+.-.|+.++..+...  ++...     .++..|..++.+.++.+|..|...|..+....+. ..
T Consensus       293 ~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~--~~~~~-----~~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~~~~~  365 (621)
T 2vgl_A          293 EPPKSKKVQHSNAKNAVLFEAISLIIHHDSE--PNLLV-----RACNQLGQFLQHRETNLRYLALESMCTLASSEFSHEA  365 (621)
T ss_dssp             SCCSCSSHHHHHHHHHHHHHHHHHHHHHCCC--HHHHH-----HHHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTTTHHH
T ss_pred             cCcccccccccchHHHHHHHHHHHHHhcCCc--HHHHH-----HHHHHHHHHhcCCCcchHHHHHHHHHHHHhccCcHHH
Confidence                     112  26677788888887532  23222     3566788888888999999999999998876542 22


Q ss_pred             hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          315 LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       315 ~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      ++ .....++..|.  .+...-.+.+|..+|-.|.
T Consensus       366 ~~-~~~~~i~~~L~--~d~d~~Ir~~aL~lL~~l~  397 (621)
T 2vgl_A          366 VK-THIETVINALK--TERDVSVRQRAVDLLYAMC  397 (621)
T ss_dssp             HH-TTHHHHHHHHT--TCCCHHHHHHHHHHHHHHC
T ss_pred             HH-HHHHHHHHHhc--cCCCHhHHHHHHHHHHHHc
Confidence            22 12333443342  1444667777777776665

>2vgl_A Adaptor protein complex AP-2, alpha 2 subunit; cytoplasmic vesicle, alternative splicing, endocytosis, lipid-binding, golgi apparatus, adaptor, membrane, transport; HET: IHP; 2.59A {Rattus norvegicus} PDB: 2xa7_A 2jkr_A 2jkt_A

Probab=98.69  E-value=1.3e-06  Score=86.71  Aligned_cols=271  Identities=15%  Similarity=0.109  Sum_probs=177.9

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--VSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      +..+.+-|+++++..+-.|+.++.++..   ++...     ..++.+.++|  .+.++.+++.|+.++.++...+++.- 
T Consensus       113 iN~l~kDl~~~n~~ir~lALr~L~~i~~---~e~~~-----~l~~~v~~~l~~~d~~~~VRK~A~~al~kl~~~~p~~~-  183 (621)
T 2vgl_A          113 NNAIKNDLASRNPTFMGLALHCIANVGS---REMAE-----AFAGEIPKILVAGDTMDSVKQSAALCLLRLYRTSPDLV-  183 (621)
T ss_dssp             HHHHHHHHHSCCHHHHHHHHHHHHHHCC---HHHHH-----HHTTHHHHHHHCSSSCHHHHHHHHHHHHHHHHHCGGGC-
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHhhccCC---HHHHH-----HHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHhChhhc-
Confidence            4455566678899999999999988843   23222     3478889999  88999999999999999998655322 


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH----HhccC-------------CHHH
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ----ILHSG-------------SVQG  167 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~----lL~~~-------------~~~~  167 (375)
                        ...+.++.+..+|.+.++.++..|+.++..++...+.  .+  ...++.+++    ++..+             ++-.
T Consensus       184 --~~~~~~~~l~~lL~d~d~~V~~~a~~~l~~i~~~~~~--~~--~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~~~~w~  257 (621)
T 2vgl_A          184 --PMGDWTSRVVHLLNDQHLGVVTAATSLITTLAQKNPE--EF--KTSVSLAVSRLSRIVTSASTDLQDYTYYFVPAPWL  257 (621)
T ss_dssp             --CCCSCHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCHH--HH--TTHHHHHHHHHHHHHHCCSSSCSTTEETTEESHHH
T ss_pred             --CchhHHHHHHHHhCCCCccHHHHHHHHHHHHHHhChH--HH--HHHHHHHHHHHHHHHhCCCCCccchhhcCCCCchH
Confidence              1258899999999999999999999999999875431  11  123444444    33322             4667


Q ss_pred             HHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhh---------cccchHHHHHHHHHHHHhhCChhhhHHHhhccC
Q 017249          168 RVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKD---------CKKYSKFAEKATALLEILSSSEEGRIAITNSDG  236 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~---------~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g  236 (375)
                      +...+..|..++..+  +....+.+  .++.++..+.+         .+....+.-.|..++..+...++...      .
T Consensus       258 qi~il~ll~~~~~~~d~~~~~~l~~--~L~~il~~~~~~~ks~~l~~~n~~~aVl~ea~~~i~~l~~~~~~~~------~  329 (621)
T 2vgl_A          258 SVKLLRLLQCYPPPEDPAVRGRLTE--CLETILNKAQEPPKSKKVQHSNAKNAVLFEAISLIIHHDSEPNLLV------R  329 (621)
T ss_dssp             HHHHHHHGGGSSSCSSHHHHHHHHH--HHHHHHHHHHSCCSCSSHHHHHHHHHHHHHHHHHHHHHCCCHHHHH------H
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHH--HHHHHHHhhccCcccccccccchHHHHHHHHHHHHHhcCCcHHHHH------H
Confidence            778888877776432  11222211  22333322211         11111455567777777764443222      3


Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChhhhh
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQEKRL  315 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~~~~  315 (375)
                      ++..|..+|.+.++.++..|+..|..++...+ . ...+  ......++..+. +.|+.++..|..+|..++....    
T Consensus       330 ~~~~L~~~L~~~~~niry~aL~~l~~l~~~~~-~-~~~~--~~~~~~i~~~L~~d~d~~Ir~~aL~lL~~l~~~~N----  401 (621)
T 2vgl_A          330 ACNQLGQFLQHRETNLRYLALESMCTLASSEF-S-HEAV--KTHIETVINALKTERDVSVRQRAVDLLYAMCDRSN----  401 (621)
T ss_dssp             HHHHHHHHSSCSCHHHHHHHHHHHHHHTTCTT-T-HHHH--HTTHHHHHHHHTTCCCHHHHHHHHHHHHHHCCHHH----
T ss_pred             HHHHHHHHhcCCCcchHHHHHHHHHHHHhccC-c-HHHH--HHHHHHHHHHhccCCCHhHHHHHHHHHHHHcChhh----
Confidence            56678888888889999999999999987652 1 1122  234667777777 8899999999999988876542    


Q ss_pred             hhhhHHHHHHHHh
Q 017249          316 SSSVLEKIVYDIA  328 (375)
Q Consensus       316 ~~g~~~~l~~~l~  328 (375)
                      -..++..|...+.
T Consensus       402 v~~Iv~eL~~yl~  414 (621)
T 2vgl_A          402 AQQIVAEMLSYLE  414 (621)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            1224445555553

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=98.67  E-value=1.7e-06  Score=80.85  Aligned_cols=279  Identities=12%  Similarity=0.072  Sum_probs=187.1

Q ss_pred             HhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCCh---hhHHHHHhcCC-hHHHHH-hhCCCCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSL---KTRSEFAAAGV-VQPLVL-MLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~---~~~~~~~~~g~-v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ...+..++.+|+ ..+.++....+..+..+...+ +   .....+.+..- ...+.. ++..+++-....+..++..++.
T Consensus        76 ~~~~~~~l~lL~~~~~~d~vqYvL~Li~DlL~~~-~~~~~~~~~f~~~~~~~~~l~~~~~~~dd~~~ll~a~~l~~ll~~  154 (480)
T 1ho8_A           76 GKTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQ  154 (480)
T ss_dssp             STTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTS
T ss_pred             chHHHHHHHHHhhcChHHHHHHHHHHHHHHHhcC-cchHHHHHHHhhCcccchHHHHHHhcccchHHHHHHHHHHHHHhc
Confidence            456678889887 678888889999999999887 4   44444454432 222333 4445556666777777777654


Q ss_pred             cChhhHHHHHHcCChH--HHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhc--CChHHHHHHhcc----------
Q 017249           98 RNERNKVKIATAGAIP--PLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHS----------  162 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~--~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--~~l~~L~~lL~~----------  162 (375)
                      ..+.....+.  ..+.  .++..|.+. +.+.+..++.+|..|...++.|..+...  ..++.++.++..          
T Consensus       155 ~~~~~~~~l~--~l~~~~~~~~~L~~~~~~~~~~i~v~~L~~Ll~~~~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~  232 (480)
T 1ho8_A          155 NGLHNVKLVE--KLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRI  232 (480)
T ss_dssp             TTTCCHHHHH--HHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC-------
T ss_pred             cCCccHhHHH--HHhhhHHHHHHhccccCCchHHHHHHHHHHHhcchhHHHHHHHcccchhHHHHHHHHHhhcccccccc
Confidence            3322111111  1122  455666653 4566778999999999888888887643  246666654431          


Q ss_pred             -----C--CHHHHHHHHHHHHHhccCCCCchhhhhcCCc--HHHHHHhhhcccchHHHHHHHHHHHHhhCCh-----hhh
Q 017249          163 -----G--SVQGRVDAVTALHYLSTCKENSSPILDATAV--PPLINLLKDCKKYSKFAEKATALLEILSSSE-----EGR  228 (375)
Q Consensus       163 -----~--~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i--~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-----~~~  228 (375)
                           +  ...+++.++.++|-|+..++....+...+..  +.|+.+++... .+++.+-++.+|.|+....     ...
T Consensus       233 ~~~~~~~~~~Ql~Y~~ll~iWlLSF~~~~~~~l~~~~i~~~~~L~~i~k~s~-KEKvvRv~la~l~Nll~~~~~~~~~~~  311 (480)
T 1ho8_A          233 VATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVI  311 (480)
T ss_dssp             ------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHH
T ss_pred             ccccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHhcchHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcccchhhhhHH
Confidence                 1  2456899999999999988777777665543  56777777754 4567777888888887643     111


Q ss_pred             H-HHh---------------------------------------------------------------------------
Q 017249          229 I-AIT---------------------------------------------------------------------------  232 (375)
Q Consensus       229 ~-~~~---------------------------------------------------------------------------  232 (375)
                      . .++                                                                           
T Consensus       312 ~~~~~~~~~l~~l~~L~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e  391 (480)
T 1ho8_A          312 KQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKK  391 (480)
T ss_dssp             HHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSS
T ss_pred             HHHHHHccchHHHHHHhhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHh
Confidence            1 111                                                                           


Q ss_pred             hccCcHHHHHHHhcc----------CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHH
Q 017249          233 NSDGGILTLVETVED----------GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTL  302 (375)
Q Consensus       233 ~~~g~v~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~  302 (375)
                      .+...+..|+.+|++          .++.+..-||.=|+.++.+. |+.+..+-+.|+=+.+++++.+.|+++|.+|..+
T Consensus       392 ~~~~llk~L~~iL~~~~~~~~~~~s~d~~~laVAc~Digefvr~~-P~gr~i~~~lg~K~~VM~Lm~h~d~~Vr~~AL~a  470 (480)
T 1ho8_A          392 DNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVLDKTGGKADIMELLNHSDSRVKYEALKA  470 (480)
T ss_dssp             GGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHHHHHSHHHHHHHHTSCSSHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHhhhccccccccCCCcceEEeecccHHHHHHHC-cchhHHHHHcCcHHHHHHHhcCCCHHHHHHHHHH
Confidence            122345677777763          24666777888888888887 5778877788999999999999999999999998


Q ss_pred             HHHhh
Q 017249          303 LDLLR  307 (375)
Q Consensus       303 L~~l~  307 (375)
                      +..+-
T Consensus       471 vQklm  475 (480)
T 1ho8_A          471 TQAII  475 (480)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            87653

>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}

Probab=98.65  E-value=1.2e-06  Score=73.56  Aligned_cols=223  Identities=13%  Similarity=0.070  Sum_probs=159.8

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~  146 (375)
                      +.+..|..+|.+.|+.++..++.+|..+.++-+..-....-...++.++.++++.+..+...|+.||..|..+.+ ....
T Consensus        33 ~~l~~L~~LL~dkD~~vk~raL~~LeellK~~~~~l~~~~~e~~Ld~iI~llk~~dEkval~A~r~L~~LLe~vpL~~~~  112 (265)
T 3b2a_A           33 RALFLILELAGEDDETTRLRAFVALGEILKRADSDLRMMVLERHLDVFINALSQENEKVTIKALRALGYLVKDVPMGSKT  112 (265)
T ss_dssp             HHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTCCSTTHHHHHHHHHHHHHHHTTCCBCHHH
T ss_pred             hHHHHHHHHHhccchHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCCCCHHH
Confidence            357889999999999999999999999998643333333344579999999999999999999999999988755 3333


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE  226 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~  226 (375)
                      +.  ....+|.+++.++++-.+.+++..+..|.....      ..+++..+.+++.+.  +..++..++++|.+++....
T Consensus       113 y~--Kl~~aL~dlik~~~~il~~eaae~Lgklkv~~~------~~~V~~~l~sLl~Sk--d~~vK~agl~~L~eia~~S~  182 (265)
T 3b2a_A          113 FL--KAAKTLVSLLESPDDMMRIETIDVLSKLQPLED------SKLVRTYINELVVSP--DLYTKVAGFCLFLNMLNSSA  182 (265)
T ss_dssp             HH--HHHHHHHHHTTSCCHHHHHHHHHHHHHCCBSCC------CHHHHHHHHHHHTCS--SHHHHHHHHHHHHHHGGGCS
T ss_pred             HH--HHHHHHHHHhcCCCchHHHHHHHHhCcCCcccc------hHHHHHHHHHHHhCC--ChhHHHHHHHHHHHhhcccC
Confidence            32  346788999999999999999999998821111      123566788888433  66889999999999987543


Q ss_pred             hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-Hh-hhCCHHHHHHHHHHHH
Q 017249          227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LT-VEGTFEAQERARTLLD  304 (375)
Q Consensus       227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll-~~~~~~~~~~A~~~L~  304 (375)
                      ....+   .+.+..+-.+|.+.++.+++.|+.++..+....-.  ...+.+--.+...+. +. ..|.|..+..|-.+-.
T Consensus       183 D~~i~---~~I~~eI~elL~~eD~~l~e~aLd~Le~ils~pi~--~~~~~~~~~~~~~v~~l~~~~~~~~~~~ka~~v~~  257 (265)
T 3b2a_A          183 DSGHL---TLILDEIPSLLQNDNEFIVELALDVLEKALSFPLL--ENVKIELLKISRIVDGLVYREGAPIIRLKAKKVSD  257 (265)
T ss_dssp             SCCCG---GGTTTTHHHHHTCSCHHHHHHHHHHHHHHTTSCCC--SCCHHHHHHHHHHHHHGGGCSSCHHHHHHHHHHHH
T ss_pred             CHHHH---HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHcCccc--HhHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHH
Confidence            32221   24555677788889999999999999999876421  111111112222232 33 4678888888866544


Q ss_pred             H
Q 017249          305 L  305 (375)
Q Consensus       305 ~  305 (375)
                      .
T Consensus       258 ~  258 (265)
T 3b2a_A          258 L  258 (265)
T ss_dssp             H
T ss_pred             H
Confidence            3

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.56  E-value=4.8e-09  Score=82.35  Aligned_cols=123  Identities=15%  Similarity=0.206  Sum_probs=93.4

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .....++.++..|+++++.++..|++.|..+...             .++.|+++|+++++.++..|+++|+++..  + 
T Consensus         9 ~~~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~~-------------~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--~-   72 (131)
T 1te4_A            9 HHSSGLVPRGSHMADENKWVRRDVSTALSRMGDE-------------AFEPLLESLSNEDWRIRGAAAWIIGNFQD--E-   72 (131)
T ss_dssp             ------------CCSSCCCSSSSCCSSTTSCSST-------------THHHHHHGGGCSCHHHHHHHHHHHGGGCS--H-
T ss_pred             cccccHHHHHHHhcCCCHHHHHHHHHHHHHhCch-------------HHHHHHHHHcCCCHHHHHHHHHHHHhcCC--H-
Confidence            3456678899999999999999999888765211             26899999999999999999999999863  1 


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                              ..++.|+.+|+++++.+|..|+++|.++.          ....++.|..++++++..++..|+.+|..+
T Consensus        73 --------~a~~~L~~~L~d~~~~VR~~A~~aL~~~~----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           73 --------RAVEPLIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --------HHHHHHHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --------HHHHHHHHHHcCCCHHHHHHHHHHHHHhC----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence                    24789999999999999999999999884          235688999999999999999999887653

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.55  E-value=3.6e-07  Score=79.54  Aligned_cols=183  Identities=15%  Similarity=0.152  Sum_probs=135.4

Q ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhH-HHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           28 EELSDKLINGDLETKIEAARDIRKVVKKSSLKTR-SEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        28 ~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~-~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      +.+.+.+.+.++..+..|+..|..+.... +... ..+  ..+++.|...+. +.+..++..|+.+|..|+..-...-. 
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~-~~~~~~~~--~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~-   93 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDH-PKLENGEY--GALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFS-   93 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHC-SSBCCCCC--HHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGH-
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccC-CCCCCCCH--HHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHH-
Confidence            35788889999999999999999999873 1110 000  134677888884 89999999999999999963221111 


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--CC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KE  183 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~~  183 (375)
                      -+-...+|.|+..+.+.++.+|..+..+|.++......      ...++.+...|++.++.++..++..|..+...  ++
T Consensus        94 ~~~~~ilp~ll~~l~d~~~~vr~~a~~aL~~~~~~~~~------~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~~  167 (242)
T 2qk2_A           94 NYASACVPSLLEKFKEKKPNVVTALREAIDAIYASTSL------EAQQESIVESLSNKNPSVKSETALFIARALTRTQPT  167 (242)
T ss_dssp             HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTSCH------HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCGG
T ss_pred             HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHcCCH------HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCCC
Confidence            12234689999999999999999999999999775431      23578888999999999999999999996543  22


Q ss_pred             -CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          184 -NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       184 -~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                       ...... ...++.|+.++.+.  ...++..|..++..++.
T Consensus       168 ~~~~~~l-~~l~p~l~~~l~D~--~~~VR~~A~~~l~~l~~  205 (242)
T 2qk2_A          168 ALNKKLL-KLLTTSLVKTLNEP--DPTVRDSSAEALGTLIK  205 (242)
T ss_dssp             GCCHHHH-HHHHHHHHHHHTSS--CHHHHHHHHHHHHHHHH
T ss_pred             CccHHHH-HHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHH
Confidence             111112 35788888888765  45788889999988774

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.54  E-value=1.9e-06  Score=78.70  Aligned_cols=250  Identities=10%  Similarity=-0.008  Sum_probs=154.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..++++++++|.+.|+-.--.+..++... ++..  +    ++..|.+-+.++++-++-.|+++|+++..  ++.-..
T Consensus        69 lf~~v~kl~~s~d~~lKrLvYLyl~~~~~~~-~e~i--L----v~Nsl~kDl~~~N~~iR~lALRtL~~I~~--~~m~~~  139 (355)
T 3tjz_B           69 AFFAMTKLFQSNDPTLRRMCYLTIKEMSCIA-EDVI--I----VTSSLTKDMTGKEDSYRGPAVRALCQITD--STMLQA  139 (355)
T ss_dssp             HHHHHHGGGGCCCHHHHHHHHHHHHHHTTTS-SCGG--G----GHHHHHHHHHSSCHHHHHHHHHHHHHHCC--TTTHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHhCCCH-HHHH--H----HHHHHHhhcCCCcHhHHHHHHHHHhcCCC--HHHHHH
Confidence            3444555666777777776666666666554 2221  1    36677788889999999999999999985  334333


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCc
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS  185 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~  185 (375)
                      +     .+.+.+.|.+.++.++..|+-+...|....  ...+  .++++.+-+++.+.++-++.+|+.+|..+...+.  
T Consensus       140 l-----~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~--pe~v--~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--  208 (355)
T 3tjz_B          140 I-----ERYMKQAIVDKVPSVSSSALVSSLHLLKCS--FDVV--KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--  208 (355)
T ss_dssp             H-----HHHHHHHHTCSSHHHHHHHHHHHHHHTTTC--HHHH--HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--
T ss_pred             H-----HHHHHHHcCCCCHHHHHHHHHHHHHHhccC--HHHH--HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--
Confidence            3     457888889999999999999999886543  2332  3689999999999999999999999999976431  


Q ss_pred             hhhhhcCCcHHHHHHhhhccc-chHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          186 SPILDATAVPPLINLLKDCKK-YSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       186 ~~i~~~g~i~~Lv~ll~~~~~-~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                            ..+..|+.-+..+.. ++-.   -+.+|..+... +.+-.. . ....++.|.+.|++.++.+.-+|+.++..+
T Consensus       209 ------~a~~kLv~~l~~~~l~~~~~---q~~llr~l~~~~~~d~~~-~-~~~~~~~l~~~L~~~~~aVvyEa~k~I~~l  277 (355)
T 3tjz_B          209 ------LAVSKMISKFTRHGLKSPFA---YCMMIRVASRQLEDEDGS-R-DSPLFDFIESCLRNKHEMVVYEAASAIVNL  277 (355)
T ss_dssp             ------HHHHHHHHHHHSSCCSCHHH---HHHHHHHHTCC-------------------CCCCCSSHHHHHHHHHHHTC-
T ss_pred             ------HHHHHHHHHHhcCCCcChHH---HHHHHHHHHHhccccchh-h-HHHHHHHHHHHHcCCChHHHHHHHHHHHhc
Confidence                  133445555444311 1111   23344433321 111001 1 235667788888899999999999999998


Q ss_pred             cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      .... ..     .-..++..|..++.+.++.+|..|...|..+....|.
T Consensus       278 ~~~~-~~-----~~~~a~~~L~~fLss~d~niryvaLr~L~~l~~~~P~  320 (355)
T 3tjz_B          278 PGCS-AK-----ELAPAVSVLQLFCSSPKAALRYAAVRTLNKVAMKHPS  320 (355)
T ss_dssp             ----------------CCCTHHHHHHSSSSSSHHHHHHCC---------
T ss_pred             cCCC-HH-----HHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHCcH
Confidence            6532 11     1144567788888899999999999988888877664

>2qk2_A LP04448P; mini spindles, MSPS, XMAP215, DIS1, STU2, heat repeat, micro plus END, +TIP, protein binding; 2.10A {Drosophila melanogaster}

Probab=98.51  E-value=4e-07  Score=79.24  Aligned_cols=185  Identities=12%  Similarity=0.104  Sum_probs=136.0

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHHHhcCChHHHHHHhc-cCCHHHHHHHHHHHHHhccCC-CCchhhh
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAIAASGAAPLLVQILH-SGSVQGRVDAVTALHYLSTCK-ENSSPIL  189 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i~~~~~l~~L~~lL~-~~~~~~~~~a~~~L~~L~~~~-~~~~~i~  189 (375)
                      +.+.+.+.+.+-..|..++..|..+... +..... .-...++.|...+. +.+..++..|+.+|..|+..- ..... .
T Consensus        18 ~~l~~~l~s~~w~~R~~a~~~L~~l~~~~~~~~~~-~~~~i~~~L~~~l~kd~~~~V~~~a~~~l~~la~~l~~~~~~-~   95 (242)
T 2qk2_A           18 KDFYDKLEEKKWTLRKESLEVLEKLLTDHPKLENG-EYGALVSALKKVITKDSNVVLVAMAGKCLALLAKGLAKRFSN-Y   95 (242)
T ss_dssp             TTHHHHHTCSSHHHHHHHHHHHHHHHHHCSSBCCC-CCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHGGGGHH-H
T ss_pred             HHHHhhhccCCHHHHHHHHHHHHHHHccCCCCCCC-CHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHHhhhHHH-H
Confidence            3477888888999999999999998875 221100 01245777888884 889999999999999998542 11111 1


Q ss_pred             hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249          190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD  269 (375)
Q Consensus       190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  269 (375)
                      -...++.++..+.+.  ...++..+..+|.+++....     +  ...++.+...|.+.++.++..++..|..+.....+
T Consensus        96 ~~~ilp~ll~~l~d~--~~~vr~~a~~aL~~~~~~~~-----~--~~ll~~l~~~l~~~~~~vr~~~l~~l~~~l~~~~~  166 (242)
T 2qk2_A           96 ASACVPSLLEKFKEK--KPNVVTALREAIDAIYASTS-----L--EAQQESIVESLSNKNPSVKSETALFIARALTRTQP  166 (242)
T ss_dssp             HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHTTSC-----H--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCCG
T ss_pred             HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHcCC-----H--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHcCC
Confidence            134788888888775  45788999999998876432     1  23677788889998999999999999996554322


Q ss_pred             H--HHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          270 K--YRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       270 ~--~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      +  ....+  ..+++.|+.++.+.++.+|..|..++..+...-
T Consensus       167 ~~~~~~~l--~~l~p~l~~~l~D~~~~VR~~A~~~l~~l~~~v  207 (242)
T 2qk2_A          167 TALNKKLL--KLLTTSLVKTLNEPDPTVRDSSAEALGTLIKLM  207 (242)
T ss_dssp             GGCCHHHH--HHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHHH
T ss_pred             CCccHHHH--HHHHHHHHHHhcCCChHHHHHHHHHHHHHHHHc
Confidence            2  12222  368899999999999999999999999987655

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.44  E-value=3.8e-06  Score=86.06  Aligned_cols=303  Identities=14%  Similarity=0.169  Sum_probs=207.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh---hh
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE---RN  102 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~---~~  102 (375)
                      .+..++..+...+...+..++..+..+..+. ....  .+..+++..|.+.+.+....  +.|+.++..|+....   ..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~   89 (986)
T 2iw3_A           15 VLEELFQKLSVATADNRHEIASEVASFLNGN-IIEH--DVPEHFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSV   89 (986)
T ss_dssp             HHHHHHHHHTTCCTTTHHHHHHHHHHHHTSS-CSSS--SCCHHHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTT
T ss_pred             HHHHHHhhccccchhHHHHHHHHHHHHHhcc-cccc--ccchhHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCc
Confidence            3445666676555666677888888877644 1111  11135677888888775433  999999999995332   22


Q ss_pred             HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-CHHHHHHHHHHHHHhccC
Q 017249          103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-SVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-~~~~~~~a~~~L~~L~~~  181 (375)
                      -..++  +.+|.++..+.+....++..|..++..+...-.. ..+  ...+|.|+..|.+. .-..+..|+.++..|+..
T Consensus        90 e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~-~a~--~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~  164 (986)
T 2iw3_A           90 EPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNP-VAI--KALLPHLTNAIVETNKWQEKIAILAAFSAMVDA  164 (986)
T ss_dssp             HHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCG-GGH--HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
T ss_pred             ccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCH-HHH--HHHHHHHHHHhccccchHHHHHHHHHHHHHHHH
Confidence            22222  5788888888888889998888888777654221 111  45688899988766 478899999999999864


Q ss_pred             CCCchhhh--hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          182 KENSSPIL--DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       182 ~~~~~~i~--~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      ..  ..+.  -...+|.+...+.+.  .+.+...|..++..+|..-.|+..    ...+|.|+..+.+++.  ...++..
T Consensus       165 ~~--~~~~~~~~~~~p~~~~~~~d~--k~~v~~~~~~~~~~~~~~~~n~d~----~~~~~~~~~~~~~p~~--~~~~~~~  234 (986)
T 2iw3_A          165 AK--DQVALRMPELIPVLSETMWDT--KKEVKAAATAAMTKATETVDNKDI----ERFIPSLIQCIADPTE--VPETVHL  234 (986)
T ss_dssp             SH--HHHHHHHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHHGGGCCCTTT----GGGHHHHHHHHHCTTH--HHHHHHH
T ss_pred             hH--HHHHHhccchhcchHhhcccC--cHHHHHHHHHHHHHHHhcCCCcch----hhhHHHHHHHhcChhh--hHHHHHH
Confidence            32  3332  246788888888776  346888899999988876666542    4689999999988754  4556666


Q ss_pred             HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhh--cCCChHHH
Q 017249          260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA--RVDGADKA  337 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~--~~~g~~~~  337 (375)
                      |..-..-..-+ ...+  .=.+|.|.+-+...+..++++++-+..|+|+-........-++|.|+..+..  ..-..|++
T Consensus       235 l~~~tfv~~v~-~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~  311 (986)
T 2iw3_A          235 LGATTFVAEVT-PATL--SIMVPLLSRGLNERETGIKRKSAVIIDNMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEA  311 (986)
T ss_dssp             HTTCCCCSCCC-HHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHHHHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHH
T ss_pred             hhcCeeEeeec-chhH--HHHHHHHHhhhccCcchhheeeEEEEcchhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHH
Confidence            65544432100 0001  1246777778888899999999999999999886666666677777666653  23345999


Q ss_pred             HHHHHHHHHHHHHH
Q 017249          338 AETAKRLLQDMVQR  351 (375)
Q Consensus       338 ~~~a~~~l~~l~~~  351 (375)
                      ++.|.++++.|.+.
T Consensus       312 r~~~~~a~~~l~~~  325 (986)
T 2iw3_A          312 REVTLRALKTLRRV  325 (986)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh
Confidence            99999999999765

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.30  E-value=0.00023  Score=72.38  Aligned_cols=256  Identities=14%  Similarity=0.061  Sum_probs=169.7

Q ss_pred             HHHHHHHHhcCCC--------HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           26 LIEELSDKLINGD--------LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        26 ~l~~Lv~~L~s~~--------~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      .+..|...|.+++        +.++.-|+..|.-...+.  .+.      .+++.|.+.|.+++..++..|+.+|+.+-.
T Consensus       430 ~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla~~GS--~~e------ev~e~L~~~L~dd~~~~~~~AalALGli~v  501 (963)
T 4ady_A          430 TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLAAMGS--ANI------EVYEALKEVLYNDSATSGEAAALGMGLCML  501 (963)
T ss_dssp             HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHHSTTC--CCH------HHHHHHHHHHHTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCccccccccccHHHHHHHHHHHHHHhcCC--CCH------HHHHHHHHHHhcCCHHHHHHHHHHHhhhhc
Confidence            4566666676444        556667777777765544  111      246778888888877777888888887743


Q ss_pred             cChhhHHHHHHcCChHHHHHhh-cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-CCHHHHHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELL-KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-GSVQGRVDAVTAL  175 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL-~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L  175 (375)
                      ++. +..      ++..|+..+ +..+..++..++..|..+...        ....++.+++.|.. .++-++..++.++
T Consensus       502 GTg-n~~------ai~~LL~~~~e~~~e~vrR~aalgLGll~~g--------~~e~~~~li~~L~~~~dp~vRygaa~al  566 (963)
T 4ady_A          502 GTG-KPE------AIHDMFTYSQETQHGNITRGLAVGLALINYG--------RQELADDLITKMLASDESLLRYGGAFTI  566 (963)
T ss_dssp             TCC-CHH------HHHHHHHHHHHCSCHHHHHHHHHHHHHHTTT--------CGGGGHHHHHHHHHCSCHHHHHHHHHHH
T ss_pred             ccC-CHH------HHHHHHHHHhccCcHHHHHHHHHHHHhhhCC--------ChHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence            322 111      234555543 445788888888888887542        34567888888764 5777788877776


Q ss_pred             HHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh-ccCChHHHH
Q 017249          176 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLVSTQ  254 (375)
Q Consensus       176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~~~~  254 (375)
                      .--..+..+.      ..++.|+..+.++. ...++..|.-.|+.+.....         ..++.++.+| .+.++.+|.
T Consensus       567 glAyaGTGn~------~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~---------e~v~rlv~~L~~~~d~~VR~  630 (963)
T 4ady_A          567 ALAYAGTGNN------SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDY---------TTVPRIVQLLSKSHNAHVRC  630 (963)
T ss_dssp             HHHTTTSCCH------HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSC---------SSHHHHTTTGGGCSCHHHHH
T ss_pred             HHHhcCCCCH------HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCH---------HHHHHHHHHHHhcCCHHHHH
Confidence            6433333332      24566777776654 45678888888887765432         3566777655 568899999


Q ss_pred             HHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhh--hhhhhHHHHHHHHh
Q 017249          255 HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKR--LSSSVLEKIVYDIA  328 (375)
Q Consensus       255 ~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~--~~~g~~~~l~~~l~  328 (375)
                      .|+.+|+.++.+.+.        ..++..|..+.++.++.|+..|+.+|..+.-...+..  .-.++...|.....
T Consensus       631 gAalALGli~aGn~~--------~~aid~L~~L~~D~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~~~~~  698 (963)
T 4ady_A          631 GTAFALGIACAGKGL--------QSAIDVLDPLTKDPVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFLSVIT  698 (963)
T ss_dssp             HHHHHHHHHTSSSCC--------HHHHHHHHHHHTCSSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCCc--------HHHHHHHHHHccCCCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHHHHHh
Confidence            999999999887631        2345677788899999999999999999976543211  12344555555443

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.30  E-value=0.0005  Score=55.54  Aligned_cols=217  Identities=16%  Similarity=0.160  Sum_probs=160.4

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccCh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      -+...+..++..|.++-|.++..|+..+..++..- ++..+.+     +..|+-++ +++.........++++.++...|
T Consensus        29 ~d~~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~-~el~epl-----~~kL~vm~~ksEaIpltqeIa~a~G~la~i~P  102 (253)
T 2db0_A           29 YDESVLKKLIELLDDDLWTVVKNAISIIMVIAKTR-EDLYEPM-----LKKLFSLLKKSEAIPLTQEIAKAFGQMAKEKP  102 (253)
T ss_dssp             HCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTC-GGGHHHH-----HHHHHHHHHHCCSHHHHHHHHHHHHHHHHHCH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHhHHHHHHHHHHHh-HHHHHHH-----HHHHHHHHhhcccCchHHHHHHHHhHHHHhCH
Confidence            45678999999999999999999999999999988 7766654     45666666 45566777788899999998776


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      +.-..+     +|.+..=++-+++..+.+...+|-.++...+.    .-.+.+.-+..++.+++..-+..|+..+..+..
T Consensus       103 e~v~~v-----Vp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~~Dkl~aLnFi~alGe  173 (253)
T 2db0_A          103 ELVKSM-----IPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNREDKLTALNFIEAMGE  173 (253)
T ss_dssp             HHHHHH-----HHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSHHHHHHHHHHHHTCCT
T ss_pred             HHHHhh-----HHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhc
Confidence            554433     66777777788999999999999998764331    123556778889999987767777777666543


Q ss_pred             CCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          181 CKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       181 ~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                         |....+ ...+|.|..+|.+.  +..++..+...|.+++.. +.-|+       ++..-+.-+++.++.++......
T Consensus       174 ---n~~~yv-~PfLprL~aLL~D~--deiVRaSaVEtL~~lA~~npklRk-------ii~~kl~e~~D~S~lv~~~V~eg  240 (253)
T 2db0_A          174 ---NSFKYV-NPFLPRIINLLHDG--DEIVRASAVEALVHLATLNDKLRK-------VVIKRLEELNDTSSLVNKTVKEG  240 (253)
T ss_dssp             ---TTHHHH-GGGHHHHHGGGGCS--SHHHHHHHHHHHHHHHTSCHHHHH-------HHHHHHHHCCCSCHHHHHHHHHH
T ss_pred             ---cCcccc-CcchHHHHHHHcCc--chhhhHHHHHHHHHHHHcCHHHHH-------HHHHHHHHhcCcHHHHHHHHHHH
Confidence               333322 34788999999887  557888899999999974 44343       33345666778888888877777


Q ss_pred             HHHhccc
Q 017249          260 LLSLCQS  266 (375)
Q Consensus       260 L~~l~~~  266 (375)
                      |..+..-
T Consensus       241 L~rl~l~  247 (253)
T 2db0_A          241 ISRLLLL  247 (253)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHH
Confidence            7766543

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.29  E-value=5e-06  Score=72.59  Aligned_cols=191  Identities=12%  Similarity=0.055  Sum_probs=133.4

Q ss_pred             HHHhhcCCChHHHHHHHHHHHH-hhccCC-ChhHHHh-cCChHHHHHHh-ccCCHHHHHHHHHHHHHhccC-C-CCch-h
Q 017249          115 LVELLKFQNGTLRELAAAAILT-LSAAAP-NKPAIAA-SGAAPLLVQIL-HSGSVQGRVDAVTALHYLSTC-K-ENSS-P  187 (375)
Q Consensus       115 Lv~lL~~~~~~~~~~a~~~L~~-Ls~~~~-~~~~i~~-~~~l~~L~~lL-~~~~~~~~~~a~~~L~~L~~~-~-~~~~-~  187 (375)
                      +.+.+.+.+..-|..|+..|.. +..... ......+ ...+..|.+.+ ++.+..++..|+.+|..|+.. . +... .
T Consensus        21 f~~~l~s~~w~eRk~al~~L~~~~~~~~~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~~~  100 (249)
T 2qk1_A           21 FQERITSSKWKDRVEALEEFWDSVLSQTKKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFSKD  100 (249)
T ss_dssp             HHHHHTCSSHHHHHHHHHHHHHHTGGGCCCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSCHH
T ss_pred             HHHHhhcCCHHHHHHHHHHHHHHHHhcCCccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhcccccccHH
Confidence            4566788888899999999999 875422 1100111 24477788888 788999999999999999853 2 2221 1


Q ss_pred             hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-hhhHHH-hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          188 ILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAI-TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       188 i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~-~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      . ...+++.++..+.+.  ...+++.+..++..++..- .....- +  ...++.|+..|.+.++.+++.++.+|..++.
T Consensus       101 y-~~~llp~ll~~l~dk--k~~V~~aa~~al~~i~~~~~~~~~~~~l--~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~  175 (249)
T 2qk1_A          101 Y-VSLVFTPLLDRTKEK--KPSVIEAIRKALLTICKYYDPLASSGRN--EDMLKDILEHMKHKTPQIRMECTQLFNASMK  175 (249)
T ss_dssp             H-HHHHHHHHHHGGGCC--CHHHHHHHHHHHHHHHHHSCTTCTTCTT--HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHH
T ss_pred             H-HHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHHHHccccccCCcH--HHHHHHHHHHHcCCChHHHHHHHHHHHHHHH
Confidence            1 123678888888765  3467788888888777521 111100 1  1367788889998899999999999999887


Q ss_pred             cCcH--HHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          266 SCRD--KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       266 ~~~~--~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ....  ..-...+...++|.|..++.+.++.+|..|..+|..++..-
T Consensus       176 ~~~~~~~~l~~~l~~~iip~l~~~l~D~~~~VR~aA~~~l~~i~~~v  222 (249)
T 2qk1_A          176 EEKDGYSTLQRYLKDEVVPIVIQIVNDTQPAIRTIGFESFAILIKIF  222 (249)
T ss_dssp             HCCSCSHHHHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHH
T ss_pred             HcCCcchhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHh
Confidence            6531  11112223678999999999999999999999999987544

>2qk1_A Protein STU2; STU2P, XMAP215, DIS1, TOG, CH-TOG, heat repeat, microtubule plus END, +TIP, protein binding; 1.70A {Saccharomyces cerevisiae}

Probab=98.28  E-value=1.5e-06  Score=75.91  Aligned_cols=190  Identities=13%  Similarity=0.156  Sum_probs=134.2

Q ss_pred             HHHHHhcCCCHHHHHHHHHHHHH-HHhhCChhhHHHHHh-cCChHHHHHhh-CCCCHHHHHHHHHHHHHhhccCh--hhH
Q 017249           29 ELSDKLINGDLETKIEAARDIRK-VVKKSSLKTRSEFAA-AGVVQPLVLML-VSPNLDAIESSLLALLNLAVRNE--RNK  103 (375)
Q Consensus        29 ~Lv~~L~s~~~~~~~~a~~~l~~-l~~~~~~~~~~~~~~-~g~v~~Lv~~L-~~~~~~~~~~a~~~L~~L~~~~~--~~r  103 (375)
                      .+.+.+.+.++..+..|+..|.. ++.+. +.....-.+ ...++.|.+.+ ++.+..++..|+.+|+.++.+-.  ...
T Consensus        20 ~f~~~l~s~~w~eRk~al~~L~~~~~~~~-~~i~~~~~~~~~~~~~L~~~l~~D~n~~v~~~A~~al~~la~~l~~~~f~   98 (249)
T 2qk1_A           20 DFQERITSSKWKDRVEALEEFWDSVLSQT-KKLKSTSQNYSNLLGIYGHIIQKDANIQAVALAAQSVELICDKLKTPGFS   98 (249)
T ss_dssp             THHHHHTCSSHHHHHHHHHHHHHHTGGGC-CCBCCTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             hHHHHhhcCCHHHHHHHHHHHHHHHHhcC-CccccCcccHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHhccccccc
Confidence            35667789999999999999999 87553 211100001 13477788888 78899999999999999996321  111


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                      . -+..-.+|.++..+++..+.++..+..++..++...+. ...-.-...++.|+..|++.++.++..++.+|..+....
T Consensus        99 ~-~y~~~llp~ll~~l~dkk~~V~~aa~~al~~i~~~~~~~~~~~~l~~ll~~l~~~l~~k~~~vk~~al~~l~~~~~~~  177 (249)
T 2qk1_A           99 K-DYVSLVFTPLLDRTKEKKPSVIEAIRKALLTICKYYDPLASSGRNEDMLKDILEHMKHKTPQIRMECTQLFNASMKEE  177 (249)
T ss_dssp             H-HHHHHHHHHHHHGGGCCCHHHHHHHHHHHHHHHHHSCTTCTTCTTHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             H-HHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccccccCCcHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHHc
Confidence            0 11123588999999998999999999999998875321 110001246778888999999999999999999888543


Q ss_pred             CCc-hh---hhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          183 ENS-SP---ILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       183 ~~~-~~---i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      ... ..   .+....+|.|.+++.+.  ...++..|..++..++
T Consensus       178 ~~~~~~l~~~l~~~iip~l~~~l~D~--~~~VR~aA~~~l~~i~  219 (249)
T 2qk1_A          178 KDGYSTLQRYLKDEVVPIVIQIVNDT--QPAIRTIGFESFAILI  219 (249)
T ss_dssp             CSCSHHHHHHHTTTHHHHHHHHHTCS--SHHHHHHHHHHHHHHH
T ss_pred             CCcchhHHHHHHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHH
Confidence            221 22   12256889999999776  5578999999888776

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=98.25  E-value=4.2e-05  Score=68.18  Aligned_cols=154  Identities=15%  Similarity=0.103  Sum_probs=126.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      -.+..+++.|++++.+.+..++..|..+.+.+ ......|+..+|+..|+......+...+..++++|.+|-. ......
T Consensus       118 ~ra~~iiekL~~~~~~~lr~aLfsLk~~~q~D-~~Fa~EFI~~~GL~~Li~vi~~~~gN~q~Y~L~AL~~LM~-~v~Gm~  195 (339)
T 3dad_A          118 VRVNAILEKLYSSSGPELRRSLFSLKQIFQED-KDLVPEFVHSEGLSCLIRVGAAADHNYQSYILRALGQLML-FVDGML  195 (339)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTC-TTHHHHHHHTTHHHHHHHHHTTSCHHHHHHHHHHHHHHTT-SHHHHH
T ss_pred             HHHHHHHHHHhcCCcHHHHHHHHHHHHHhhcc-hHHHHHHHHhccHHHHHHHHHhcChHHHHHHHHHHHHHHh-cccccc
Confidence            34678888888888999999999999966555 5899999999999999999999999999999999999987 566776


Q ss_pred             HHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHh----------cCChHHHHHHhc---cCCHHHHH
Q 017249          105 KIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAA----------SGAAPLLVQILH---SGSVQGRV  169 (375)
Q Consensus       105 ~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~----------~~~l~~L~~lL~---~~~~~~~~  169 (375)
                      -++. ...|..+..++.+.+..+.+.|+..|..++...+ +...+..          ..-+..|+.+|.   +.+.+++.
T Consensus       196 gvvs~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~  275 (339)
T 3dad_A          196 GVVAHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSENNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLV  275 (339)
T ss_dssp             HHHHCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHH
T ss_pred             chhCCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCcccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHH
Confidence            6664 6789999999998899999999999999988876 3333221          123788999997   67899999


Q ss_pred             HHHHHHHHhcc
Q 017249          170 DAVTALHYLST  180 (375)
Q Consensus       170 ~a~~~L~~L~~  180 (375)
                      +|..+|-.+-.
T Consensus       276 ~amtLIN~lL~  286 (339)
T 3dad_A          276 YTVTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            99887766543

>2db0_A 253AA long hypothetical protein; heat repeats, helical structure, structural genomics; 2.20A {Pyrococcus horikoshii}

Probab=98.21  E-value=0.00014  Score=58.64  Aligned_cols=213  Identities=17%  Similarity=0.219  Sum_probs=150.2

Q ss_pred             CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhH
Q 017249           68 GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPA  146 (375)
Q Consensus        68 g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~  146 (375)
                      .+++.++.+|.++-..++..|+..+.+++..-++....+..     .|+.+++ +..-...+..+.++..++.-.+   .
T Consensus        32 ~~l~~lI~~LDDDlwtV~kNAl~vi~~i~~~~~el~epl~~-----kL~vm~~ksEaIpltqeIa~a~G~la~i~P---e  103 (253)
T 2db0_A           32 SVLKKLIELLDDDLWTVVKNAISIIMVIAKTREDLYEPMLK-----KLFSLLKKSEAIPLTQEIAKAFGQMAKEKP---E  103 (253)
T ss_dssp             HHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCGGGHHHHHH-----HHHHHHHHCCSHHHHHHHHHHHHHHHHHCH---H
T ss_pred             HHHHHHHHHhccHHHHHHHhHHHHHHHHHHHhHHHHHHHHH-----HHHHHHhhcccCchHHHHHHHHhHHHHhCH---H
Confidence            57899999999999999999999999999988877776644     6666654 4456665677788888875322   1


Q ss_pred             HHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh
Q 017249          147 IAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE  226 (375)
Q Consensus       147 i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~  226 (375)
                      + -.+.+|.+..-..-+++.++.+...+|-.++..++.    .-.+++..+..++.+.+.  .-+..++   .-+..-.+
T Consensus       104 ~-v~~vVp~lfanyrigd~kikIn~~yaLeeIaranP~----l~~~v~rdi~smltskd~--~Dkl~aL---nFi~alGe  173 (253)
T 2db0_A          104 L-VKSMIPVLFANYRIGDEKTKINVSYALEEIAKANPM----LMASIVRDFMSMLSSKNR--EDKLTAL---NFIEAMGE  173 (253)
T ss_dssp             H-HHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHCHH----HHHHHHHHHHHHTSCSSH--HHHHHHH---HHHHTCCT
T ss_pred             H-HHhhHHHHHHHHhcCCccceecHHHHHHHHHHhChH----HHHHHHHHHHHHhcCCCh--HHHHHHH---HHHHHHhc
Confidence            1 134466666666778999999999999888754221    123466778888886532  2223344   33444444


Q ss_pred             hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHh
Q 017249          227 GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL  306 (375)
Q Consensus       227 ~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l  306 (375)
                      +...-+  .-.+|.|+.+|.+.+..+|..|+.+|.+++.-+ +..+..+.      .-++=+.+.+..+++.....|..+
T Consensus       174 n~~~yv--~PfLprL~aLL~D~deiVRaSaVEtL~~lA~~n-pklRkii~------~kl~e~~D~S~lv~~~V~egL~rl  244 (253)
T 2db0_A          174 NSFKYV--NPFLPRIINLLHDGDEIVRASAVEALVHLATLN-DKLRKVVI------KRLEELNDTSSLVNKTVKEGISRL  244 (253)
T ss_dssp             TTHHHH--GGGHHHHHGGGGCSSHHHHHHHHHHHHHHHTSC-HHHHHHHH------HHHHHCCCSCHHHHHHHHHHHHHH
T ss_pred             cCcccc--CcchHHHHHHHcCcchhhhHHHHHHHHHHHHcC-HHHHHHHH------HHHHHhcCcHHHHHHHHHHHHHHH
Confidence            444444  358999999999999999999999999999987 56555442      233445667788888887777766


Q ss_pred             h
Q 017249          307 R  307 (375)
Q Consensus       307 ~  307 (375)
                      .
T Consensus       245 ~  245 (253)
T 2db0_A          245 L  245 (253)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1te4_A Conserved protein MTH187; methanobacterium thermoautotrophicum, structural proteomics, heat-like repeat; NMR {Methanothermobacterthermautotrophicus} SCOP: a.118.1.16

Probab=98.18  E-value=3.3e-07  Score=71.69  Aligned_cols=121  Identities=21%  Similarity=0.166  Sum_probs=89.5

Q ss_pred             cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhh
Q 017249          109 AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI  188 (375)
Q Consensus       109 ~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i  188 (375)
                      ...++.|+.+|+++++.+|..|+++|..+..           ..++.|+.+|+++++.++..|+++|.++..        
T Consensus        11 ~~~~~~l~~~L~~~~~~vR~~A~~~L~~~~~-----------~~~~~L~~~L~d~~~~vR~~A~~aL~~~~~--------   71 (131)
T 1te4_A           11 SSGLVPRGSHMADENKWVRRDVSTALSRMGD-----------EAFEPLLESLSNEDWRIRGAAAWIIGNFQD--------   71 (131)
T ss_dssp             ----------CCSSCCCSSSSCCSSTTSCSS-----------TTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--------
T ss_pred             cccHHHHHHHhcCCCHHHHHHHHHHHHHhCc-----------hHHHHHHHHHcCCCHHHHHHHHHHHHhcCC--------
Confidence            4567889999999999999888877765521           136999999999999999999999988752        


Q ss_pred             hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          189 LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       189 ~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                        ...++.|+.++.++  +..++..+.++|..+.           ....++.|+.++.+.++.++..|+.+|..+
T Consensus        72 --~~a~~~L~~~L~d~--~~~VR~~A~~aL~~~~-----------~~~a~~~L~~~l~d~~~~vr~~A~~aL~~i  131 (131)
T 1te4_A           72 --ERAVEPLIKLLEDD--SGFVRSGAARSLEQIG-----------GERVRAAMEKLAETGTGFARKVAVNYLETH  131 (131)
T ss_dssp             --HHHHHHHHHHHHHC--CTHHHHHHHHHHHHHC-----------SHHHHHHHHHHTTSCCTHHHHHHHHHGGGC
T ss_pred             --HHHHHHHHHHHcCC--CHHHHHHHHHHHHHhC-----------cHHHHHHHHHHHhCCCHHHHHHHHHHHHhC
Confidence              23588899999765  4578899999999875           235688899999988999999999988653

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=98.17  E-value=0.00069  Score=68.93  Aligned_cols=269  Identities=12%  Similarity=0.019  Sum_probs=171.7

Q ss_pred             hHHHHHHHHhc---CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCC--------HHHHHHHHHHHH
Q 017249           25 ALIEELSDKLI---NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPN--------LDAIESSLLALL   93 (375)
Q Consensus        25 ~~l~~Lv~~L~---s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~--------~~~~~~a~~~L~   93 (375)
                      +++..|-..|.   ++++.++.-|+-.|.-+..+.  .. +      ++..|.+.|.+++        +.++..|+..|+
T Consensus       392 ~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~--~~-~------~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          392 EGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGF--GR-D------TTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             THHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTT--TH-H------HHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCC--cH-H------HHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            34555666665   567778888888888776665  11 1      3667777776554        668888888998


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh-ccCCHHHHHHHH
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL-HSGSVQGRVDAV  172 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL-~~~~~~~~~~a~  172 (375)
                      ....++.  +..     +++.|..++...+..++..|+.+|..+.....+..      .+..|+..+ ...+..+++.++
T Consensus       463 la~~GS~--~ee-----v~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~------ai~~LL~~~~e~~~e~vrR~aa  529 (963)
T 4ady_A          463 LAAMGSA--NIE-----VYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPE------AIHDMFTYSQETQHGNITRGLA  529 (963)
T ss_dssp             HHSTTCC--CHH-----HHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHH------HHHHHHHHHHHCSCHHHHHHHH
T ss_pred             HHhcCCC--CHH-----HHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHH------HHHHHHHHHhccCcHHHHHHHH
Confidence            8764432  222     35578888887777777778888877655443332      345555554 345678888899


Q ss_pred             HHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh-ccCChH
Q 017249          173 TALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV-EDGSLV  251 (375)
Q Consensus       173 ~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL-~~~~~~  251 (375)
                      ..|..+..+.        ...++.+++.|.... ++.++..+..++..-.....+       ...|+.|++.+ .+.++.
T Consensus       530 lgLGll~~g~--------~e~~~~li~~L~~~~-dp~vRygaa~alglAyaGTGn-------~~aIq~LL~~~~~d~~d~  593 (963)
T 4ady_A          530 VGLALINYGR--------QELADDLITKMLASD-ESLLRYGGAFTIALAYAGTGN-------NSAVKRLLHVAVSDSNDD  593 (963)
T ss_dssp             HHHHHHTTTC--------GGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTSCC-------HHHHHHHHHHHHHCSCHH
T ss_pred             HHHHhhhCCC--------hHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhcCCCC-------HHHHHHHHHHhccCCcHH
Confidence            8888775432        246677888887643 455665555555432222221       12455566665 356788


Q ss_pred             HHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhc
Q 017249          252 STQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAAR  330 (375)
Q Consensus       252 ~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~  330 (375)
                      +|..|+..|+.+..+..          ..++.++. +.++.++.+|..|+.+|..++-..+.    ..+++.|.. +.  
T Consensus       594 VRraAViaLGlI~~g~~----------e~v~rlv~~L~~~~d~~VR~gAalALGli~aGn~~----~~aid~L~~-L~--  656 (963)
T 4ady_A          594 VRRAAVIALGFVLLRDY----------TTVPRIVQLLSKSHNAHVRCGTAFALGIACAGKGL----QSAIDVLDP-LT--  656 (963)
T ss_dssp             HHHHHHHHHHHHTSSSC----------SSHHHHTTTGGGCSCHHHHHHHHHHHHHHTSSSCC----HHHHHHHHH-HH--
T ss_pred             HHHHHHHHHHhhccCCH----------HHHHHHHHHHHhcCCHHHHHHHHHHHHHhccCCCc----HHHHHHHHH-Hc--
Confidence            99999999998876652          35667777 55678999999999999999865542    223443332 22  


Q ss_pred             CCChHHHHHHHHHHHHHH
Q 017249          331 VDGADKAAETAKRLLQDM  348 (375)
Q Consensus       331 ~~g~~~~~~~a~~~l~~l  348 (375)
                      .|.+...+..|.-.|..+
T Consensus       657 ~D~d~~Vrq~Ai~ALG~I  674 (963)
T 4ady_A          657 KDPVDFVRQAAMIALSMI  674 (963)
T ss_dssp             TCSSHHHHHHHHHHHHHH
T ss_pred             cCCCHHHHHHHHHHHHHH
Confidence            344455555555555544

>2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A

Probab=98.04  E-value=0.00019  Score=73.71  Aligned_cols=266  Identities=14%  Similarity=0.134  Sum_probs=176.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC--hhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSS--LKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~--~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      +.+..|.+.+......  ..|+..+..++....  +..--.++  +.++.++..+.+....++..|-.++..+...-+..
T Consensus        54 ~~~~~~~~~~~~k~~~--~~a~~~~~~~~~~~~~~~~~e~~~~--~~~~~~~~~~~dk~~~v~~aa~~~~~~~~~~~~~~  129 (986)
T 2iw3_A           54 HFFGELAKGIKDKKTA--ANAMQAVAHIANQSNLSPSVEPYIV--QLVPAICTNAGNKDKEIQSVASETLISIVNAVNPV  129 (986)
T ss_dssp             HHHHHHHHHHTSHHHH--HHHHHHHHHHTCTTTCCTTTHHHHH--TTHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSCGG
T ss_pred             hHHHHHHHHHhccCCH--HHHHHHHHHHHHhcCCCCCcccchH--HHHHHHHHHhcCCchHHHHHHHHHHHHHHHhCCHH
Confidence            4566666666543222  788888988885441  11212222  67889999999888899998888888777543332


Q ss_pred             HHHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC
Q 017249          103 KVKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      ..    ...+|.|+..|.+. .=..+..|+.++..|+...+.+-...-...+|.+.+.+.+..+++...|..++-.+|..
T Consensus       130 a~----~~~~~~~~~~~~~~~kw~~k~~~l~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~k~~v~~~~~~~~~~~~~~  205 (986)
T 2iw3_A          130 AI----KALLPHLTNAIVETNKWQEKIAILAAFSAMVDAAKDQVALRMPELIPVLSETMWDTKKEVKAAATAAMTKATET  205 (986)
T ss_dssp             GH----HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHGGG
T ss_pred             HH----HHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhHHHHHHhccchhcchHhhcccCcHHHHHHHHHHHHHHHhc
Confidence            22    33578999988765 46788899999999987653222223467899999999999999999999999988865


Q ss_pred             CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHH
Q 017249          182 KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALL  261 (375)
Q Consensus       182 ~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~  261 (375)
                      -+|...   ...+|.|++.+.++.   .+. .|...|..-..-.+.-.-.+  +=.+|.|..-|...+..++..++-++.
T Consensus       206 ~~n~d~---~~~~~~~~~~~~~p~---~~~-~~~~~l~~~tfv~~v~~~~l--~~~~p~l~r~l~~~~~~~~r~~~~~~~  276 (986)
T 2iw3_A          206 VDNKDI---ERFIPSLIQCIADPT---EVP-ETVHLLGATTFVAEVTPATL--SIMVPLLSRGLNERETGIKRKSAVIID  276 (986)
T ss_dssp             CCCTTT---GGGHHHHHHHHHCTT---HHH-HHHHHHTTCCCCSCCCHHHH--HHHHHHHHHHHTSSSHHHHHHHHHHHH
T ss_pred             CCCcch---hhhHHHHHHHhcChh---hhH-HHHHHhhcCeeEeeecchhH--HHHHHHHHhhhccCcchhheeeEEEEc
Confidence            444333   246888999888763   332 24444432222111111111  124555666666778888999999999


Q ss_pred             HhcccCcHHHHHHHHHcCChHHHHHHhh-hCCHHHHHHHHHHHHHhh
Q 017249          262 SLCQSCRDKYRQLILKEGAIPGLLRLTV-EGTFEAQERARTLLDLLR  307 (375)
Q Consensus       262 ~l~~~~~~~~~~~l~~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~  307 (375)
                      |||.--++..-..-+-...+|.|.+... -.+|++|+.|..++..|.
T Consensus       277 n~~~lv~~~~~~~~f~~~l~p~~~~~~~~~~~pe~r~~~~~a~~~l~  323 (986)
T 2iw3_A          277 NMCKLVEDPQVIAPFLGKLLPGLKSNFATIADPEAREVTLRALKTLR  323 (986)
T ss_dssp             HHHTTCCCHHHHHHHHTTTHHHHHHHTTTCCSHHHHHHHHHHHHHHH
T ss_pred             chhhhcCCHHHHhhhhhhhhhHHHHHhhccCCHHHHHHHHHHHHHHH
Confidence            9998532211112233677888877666 468999999999888884

>3tjz_B Coatomer subunit gamma; protein trafficking, golgi membrane, protein transport-prote binding complex; HET: GNP; 2.90A {Bos taurus}

Probab=98.02  E-value=4e-05  Score=69.94  Aligned_cols=241  Identities=11%  Similarity=0.010  Sum_probs=129.3

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..+.+-++++++-.+-.|++++.++...+   ...     ...+.+.+.|.+.++-++..|+-+..+|....++.-  
T Consensus       105 v~Nsl~kDl~~~N~~iR~lALRtL~~I~~~~---m~~-----~l~~~lk~~L~d~~pyVRk~A~l~~~kL~~~~pe~v--  174 (355)
T 3tjz_B          105 VTSSLTKDMTGKEDSYRGPAVRALCQITDST---MLQ-----AIERYMKQAIVDKVPSVSSSALVSSLHLLKCSFDVV--  174 (355)
T ss_dssp             GHHHHHHHHHSSCHHHHHHHHHHHHHHCCTT---THH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHTTTCHHHH--
T ss_pred             HHHHHHhhcCCCcHhHHHHHHHHHhcCCCHH---HHH-----HHHHHHHHHcCCCCHHHHHHHHHHHHHHhccCHHHH--
Confidence            3556677778899999999999999987655   222     235678888999999999999999999998766532  


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC---CHHHHHHHHHHHHHhccCC
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG---SVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~---~~~~~~~a~~~L~~L~~~~  182 (375)
                         .++++.+-+++.+.++-++.+|+.+|..+...+.  .      .+..|+..+...   ++-.+...+..+..+...+
T Consensus       175 ---~~~~~~l~~ll~d~n~~V~~~Al~lL~ei~~~d~--~------a~~kLv~~l~~~~l~~~~~q~~llr~l~~~~~~d  243 (355)
T 3tjz_B          175 ---KRWVNEAQEAASSDNIMVQYHALGLLYHVRKNDR--L------AVSKMISKFTRHGLKSPFAYCMMIRVASRQLEDE  243 (355)
T ss_dssp             ---HTTHHHHHHHTTCSSHHHHHHHHHHHHHHHTTCH--H------HHHHHHHHHHSSCCSCHHHHHHHHHHHTCC----
T ss_pred             ---HHHHHHHHHHhcCCCccHHHHHHHHHHHHHhhch--H------HHHHHHHHHhcCCCcChHHHHHHHHHHHHhcccc
Confidence               2688999999999999999999999999976531  1      334455555443   3443444444443443322


Q ss_pred             CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249          183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  262 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  262 (375)
                      +.   -.....++.+...+++.  ...+.-.|.+++..+...+.   ...  ..++..|..+|.++++.+|-.|+..|..
T Consensus       244 ~~---~~~~~~~~~l~~~L~~~--~~aVvyEa~k~I~~l~~~~~---~~~--~~a~~~L~~fLss~d~niryvaLr~L~~  313 (355)
T 3tjz_B          244 DG---SRDSPLFDFIESCLRNK--HEMVVYEAASAIVNLPGCSA---KEL--APAVSVLQLFCSSPKAALRYAAVRTLNK  313 (355)
T ss_dssp             ----------------CCCCCS--SHHHHHHHHHHHTC----------------CCCTHHHHHHSSSSSSHHHHHHCC--
T ss_pred             ch---hhHHHHHHHHHHHHcCC--ChHHHHHHHHHHHhccCCCH---HHH--HHHHHHHHHHHcCCCchHHHHHHHHHHH
Confidence            00   01234555666666654  34566667777776654222   122  2456677788888889999999999988


Q ss_pred             hcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249          263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  303 (375)
Q Consensus       263 l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L  303 (375)
                      +.... |+.   +.  ..-..+.+++.++|..+...|...|
T Consensus       314 l~~~~-P~~---v~--~~n~~ie~li~d~n~sI~t~Aittl  348 (355)
T 3tjz_B          314 VAMKH-PSA---VT--ACNLDLENLVTDANRSIATLAITTL  348 (355)
T ss_dssp             -----------------------------------------
T ss_pred             HHHHC-cHH---HH--HHHHHHHHHccCCcHhHHHHHHHHh
Confidence            87765 321   21  1334456677777777777666643

>3dad_A FH1/FH2 domain-containing protein 1; formin, FHOD1, GTPase-binding domain, ubiquitin-superfold, armadillo repeats, actin-binding, coiled coil; 2.30A {Homo sapiens}

Probab=97.99  E-value=0.00011  Score=65.38  Aligned_cols=152  Identities=14%  Similarity=0.109  Sum_probs=122.3

Q ss_pred             HHHHHHhccCCHHHHHHHHHHHHH-hccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHh
Q 017249          154 PLLVQILHSGSVQGRVDAVTALHY-LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAIT  232 (375)
Q Consensus       154 ~~L~~lL~~~~~~~~~~a~~~L~~-L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~  232 (375)
                      ..+++-|.+.+.+.+..++.-|.. +..+.+-...+++.+|+..|+++..+.  +..++..++++|.+|-.+..+...++
T Consensus       121 ~~iiekL~~~~~~~lr~aLfsLk~~~q~D~~Fa~EFI~~~GL~~Li~vi~~~--~gN~q~Y~L~AL~~LM~~v~Gm~gvv  198 (339)
T 3dad_A          121 NAILEKLYSSSGPELRRSLFSLKQIFQEDKDLVPEFVHSEGLSCLIRVGAAA--DHNYQSYILRALGQLMLFVDGMLGVV  198 (339)
T ss_dssp             HHHHHHHHHCCHHHHHHHHHHHHHHHHTCTTHHHHHHHTTHHHHHHHHHTTS--CHHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             HHHHHHHhcCCcHHHHHHHHHHHHHhhcchHHHHHHHHhccHHHHHHHHHhc--ChHHHHHHHHHHHHHHhccccccchh
Confidence            356677778888888899999988 566677788999999999999999876  55788999999999999999988888


Q ss_pred             hccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--------cC--ChHHHHHHhh---hCCHHHHHHH
Q 017249          233 NSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--------EG--AIPGLLRLTV---EGTFEAQERA  299 (375)
Q Consensus       233 ~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--------~g--~v~~L~~ll~---~~~~~~~~~A  299 (375)
                      .+...|..+..++.+....+...|+.+|..++..+. .....+.+        .|  -++.|+.++.   +++.+++.+|
T Consensus       199 s~~~fI~~lyslv~s~~~~V~k~AL~LL~v~V~~se-~~~~lv~~av~~v~~~~~~~p~~~Lv~~L~~~~~~D~elq~~a  277 (339)
T 3dad_A          199 AHSDTIQWLYTLCASLSRLVVKTALKLLLVFVEYSE-NNAPLFIRAVNSVASTTGAPPWANLVSILEEKNGADPELLVYT  277 (339)
T ss_dssp             HCHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHCG-GGHHHHHHHHHHHHHHHCCCTTHHHHHHHTTTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHHHcCccHHHHHHHHHHHHHHHccCc-ccchHHHHHHHHhhhccCCCcHHHHHHHHhccCCCCHHHHHHH
Confidence            667799999999998889999999999999988763 11222211        12  3788999887   6789999998


Q ss_pred             HHHHHHhhc
Q 017249          300 RTLLDLLRD  308 (375)
Q Consensus       300 ~~~L~~l~~  308 (375)
                      ..++..+-.
T Consensus       278 mtLIN~lL~  286 (339)
T 3dad_A          278 VTLINKTLA  286 (339)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            887775543

>1ho8_A Vacuolar ATP synthase subunit H; heat repeat, hydrolase; 2.95A {Saccharomyces cerevisiae} SCOP: a.118.1.9

Probab=97.74  E-value=0.00041  Score=64.97  Aligned_cols=231  Identities=17%  Similarity=0.132  Sum_probs=148.2

Q ss_pred             HHHHhcC-CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcC--ChHHHHHhhC---------------CC--CHHHHHHHH
Q 017249           30 LSDKLIN-GDLETKIEAARDIRKVVKKSSLKTRSEFAAAG--VVQPLVLMLV---------------SP--NLDAIESSL   89 (375)
Q Consensus        30 Lv~~L~s-~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g--~v~~Lv~~L~---------------~~--~~~~~~~a~   89 (375)
                      ++..|.. ++...+..++.++..+...+  +.|..+.+.+  .++.++..++               ++  ...++-+++
T Consensus       172 ~~~~L~~~~~~~~~~i~v~~L~~Ll~~~--~~R~~f~~~~~~~~~~l~~il~~~~~~~~~~~~~~~~~~~~~~Ql~Y~~l  249 (480)
T 1ho8_A          172 LINILQNIEQMDTCYVCIRLLQELAVIP--EYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSL  249 (480)
T ss_dssp             HHHHHHCTTCHHHHHHHHHHHHHHHTSH--HHHHHHHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHH
T ss_pred             HHHHhccccCCchHHHHHHHHHHHhcch--hHHHHHHHcccchhHHHHHHHHHhhccccccccccccCCCccHHHHHHHH
Confidence            4444544 34555667899999999877  8999888653  3666654432               11  245678899


Q ss_pred             HHHHHhhccChhhHHHHHHcCCh--HHHHHhhcCC-ChHHHHHHHHHHHHhhccCC-Chh-----HHHhcCChHHHHHHh
Q 017249           90 LALLNLAVRNERNKVKIATAGAI--PPLVELLKFQ-NGTLRELAAAAILTLSAAAP-NKP-----AIAASGAAPLLVQIL  160 (375)
Q Consensus        90 ~~L~~L~~~~~~~r~~i~~~g~i--~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~-~~~-----~i~~~~~l~~L~~lL  160 (375)
                      -+++-|+. +++....+...+..  +.|+.+++.. ...+.+.++.+|.|+..... ...     .+...++ ..++..|
T Consensus       250 l~iWlLSF-~~~~~~~l~~~~i~~~~~L~~i~k~s~KEKvvRv~la~l~Nll~~~~~~~~~~~~~~~~~~~~-l~~l~~L  327 (480)
T 1ho8_A          250 LLIWLLTF-NPVFANELVQKYLSDFLDLLKLVKITIKEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNA-LPTVQSL  327 (480)
T ss_dssp             HHHHHHTT-SHHHHHHHHTTSHHHHHHHHHHHHHCCSHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCH-HHHHHHH
T ss_pred             HHHHHHHc-CHHHHHHHHhcchHHHHHHHHHHHhhccchhHHHHHHHHHHHhcccchhhhhHHHHHHHHccc-hHHHHHH
Confidence            99999998 56666777666643  6677777654 68888899999999987652 211     2222344 4566666


Q ss_pred             ccC---CHHHHHHHHHH-------HHHhcc---------------CCC---------Cchhhhh--cCCcHHHHHHhhhc
Q 017249          161 HSG---SVQGRVDAVTA-------LHYLST---------------CKE---------NSSPILD--ATAVPPLINLLKDC  204 (375)
Q Consensus       161 ~~~---~~~~~~~a~~~-------L~~L~~---------------~~~---------~~~~i~~--~g~i~~Lv~ll~~~  204 (375)
                      ...   |+++....-.+       +..++.               +|.         |...+-+  -..+..|+++|.+.
T Consensus       328 ~~rk~~Dedl~edl~~L~e~L~~~~~~ltsfDeY~~El~sG~L~WSP~H~se~FW~ENa~kf~e~~~~llk~L~~iL~~~  407 (480)
T 1ho8_A          328 SERKYSDEELRQDISNLKEILENEYQELTSFDEYVAELDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAK  407 (480)
T ss_dssp             HSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHH
T ss_pred             hhCCCCcHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhcCCcccCCCccchhHHHHHHHHHHhcchHHHHHHHHHHhhh
Confidence            443   34333222111       122221               111         2223322  24678899999752


Q ss_pred             --------ccchHHHHHHHHHHHHhhC-ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          205 --------KKYSKFAEKATALLEILSS-SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       205 --------~~~~~~~~~a~~~L~~l~~-~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                              +.++.+..-||.=++.++. .|.++..+- .-|+=..++.++.++++.++.+|+.++..+..
T Consensus       408 ~~~~~~~~s~d~~~laVAc~Digefvr~~P~gr~i~~-~lg~K~~VM~Lm~h~d~~Vr~~AL~avQklm~  476 (480)
T 1ho8_A          408 VRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLD-KTGGKADIMELLNHSDSRVKYEALKATQAIIG  476 (480)
T ss_dssp             HHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHH-HHSHHHHHHHHTSCSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccCCCcceEEeecccHHHHHHHCcchhHHHH-HcCcHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence                    2244555566777888886 566666555 67898899999999999999999999877654

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.30  E-value=0.0064  Score=51.86  Aligned_cols=221  Identities=16%  Similarity=0.137  Sum_probs=143.0

Q ss_pred             HHHHHHHHHHHHhhccChhhHHHHHH-cCChHHHHHhh-------cCCC-----hHHHHHHHHHHHHhhccCCChhHHHh
Q 017249           83 DAIESSLLALLNLAVRNERNKVKIAT-AGAIPPLVELL-------KFQN-----GTLRELAAAAILTLSAAAPNKPAIAA  149 (375)
Q Consensus        83 ~~~~~a~~~L~~L~~~~~~~r~~i~~-~g~i~~Lv~lL-------~~~~-----~~~~~~a~~~L~~Ls~~~~~~~~i~~  149 (375)
                      +.++.|+..|..=-...++.-..+-. .|.+..|++=+       ..+.     ..-..+|+..|-.++.+++.+..+..
T Consensus        16 ~~Re~AL~eLsk~Re~~~~La~~LW~S~Gtia~LLQEIisiYp~lspp~Lt~~~SnRVcnaLaLlQcvAshpetr~~Fl~   95 (268)
T 2fv2_A           16 ETRENALLELSKKRESVPDLAPMLWHSFGTIAALLQEIVNIYPSINPPTLTAHQSNRVCNALALLQCVASHPETRSAFLA   95 (268)
T ss_dssp             TTHHHHHHHHHHHTTTCTTHHHHHHHSTTHHHHHHHHHHHTGGGBTTBCCCHHHHHHHHHHHHHHHHHHHCTTTHHHHHH
T ss_pred             hhHHHHHHHHHHhhhccccHHHHHHhccCHHHHHHHHHHHHcccCCCcccCHHHHhHHHHHHHHHHHHHcCcchhhHHHH
Confidence            45777776666543333344444444 45555554322       1111     11235677777889999999999998


Q ss_pred             cCChHHHHHHhccCC-----HHHHHHHHHHHHHhccCC--CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          150 SGAAPLLVQILHSGS-----VQGRVDAVTALHYLSTCK--ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       150 ~~~l~~L~~lL~~~~-----~~~~~~a~~~L~~L~~~~--~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      ....-.|...|+..+     ...+-.+++++..|...+  +....+.+.+.+|.+++.+..+++-.  +..|..++..+-
T Consensus        96 a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCLrime~GselS--KtvAtfIlqKIL  173 (268)
T 2fv2_A           96 AHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCLRIMESGSELS--KTVATFILQKIL  173 (268)
T ss_dssp             TTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHHHHHHHSCHHH--HHHHHHHHHHHH
T ss_pred             ccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHHHHHhhccHHH--HHHHHHHHHHHh
Confidence            887777888887654     456888999999998543  45666778899999999999986433  344777777777


Q ss_pred             CChhhhHHHhhccCcH-------HHHHH-HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc--C-ChHHHHHHhhhC
Q 017249          223 SSEEGRIAITNSDGGI-------LTLVE-TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE--G-AIPGLLRLTVEG  291 (375)
Q Consensus       223 ~~~~~~~~~~~~~g~v-------~~Lv~-lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~--g-~v~~L~~ll~~~  291 (375)
                      .++.+...+.....-+       ..++. +.+.+++.+-++.+++-..|+.+.  ..++++...  . .-..-...+-.+
T Consensus       174 ~dd~GL~YiC~t~eRF~av~~vL~~mV~~l~~~ps~RLLKhiircYlRLsdn~--rar~aL~~~LP~~Lrd~tf~~~l~~  251 (268)
T 2fv2_A          174 LDDTGLAYICQTYERFSHVAMILGKMVLQLSKEPSARLLKHVVRCYLRLSDNP--RAREALRQCLPDQLKDTTFAQVLKD  251 (268)
T ss_dssp             HSHHHHHHHTSSHHHHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTSH--HHHHHHHHHSCGGGTSSTTHHHHTS
T ss_pred             ccchhHHHHHccHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHhcCH--HHHHHHHHhCcHHhhChHHHHHHhc
Confidence            6666655555333322       22332 235678889999999999999874  667776541  1 111111122247


Q ss_pred             CHHHHHHHHHHHHHhh
Q 017249          292 TFEAQERARTLLDLLR  307 (375)
Q Consensus       292 ~~~~~~~A~~~L~~l~  307 (375)
                      |+.+++--..++.|+.
T Consensus       252 D~~~k~~l~qLl~n~~  267 (268)
T 2fv2_A          252 DTTTKRWLAQLVKNLQ  267 (268)
T ss_dssp             CHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhcC
Confidence            8888888877877763

>2fv2_A RCD1 required for cell differentiation1 homolog; armadillo-repeat, transcription; 2.20A {Homo sapiens}

Probab=97.28  E-value=0.0087  Score=51.03  Aligned_cols=99  Identities=21%  Similarity=0.161  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCC-----hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHH
Q 017249          211 AEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS-----LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLL  285 (375)
Q Consensus       211 ~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~-----~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~  285 (375)
                      .-+|+..|..++.+++.|..++ .++..-.|.++|...+     +.+|-.++++++.+...++++....+.+.+++|..+
T Consensus        73 VcnaLaLlQcvAshpetr~~Fl-~a~iplyLyPfL~t~sk~r~fE~LRLtsLGVIgaLvK~dd~eVi~fLL~tEiiplCL  151 (268)
T 2fv2_A           73 VCNALALLQCVASHPETRSAFL-AAHIPLFLYPFLHTVSKTRPFEYLRLTSLGVIGALVKTDEQEVINFLLTTEIIPLCL  151 (268)
T ss_dssp             HHHHHHHHHHHHHCTTTHHHHH-HTTGGGGTHHHHHCCCCSHHHHHHHHHHHHHHHHHGGGCCHHHHHHHHHTTHHHHHH
T ss_pred             HHHHHHHHHHHHcCcchhhHHH-HccchHHhhhhhccccCCCcchhhhhhHHHHHHHHhccCcHHHHHHHHhhhHHHHHH
Confidence            3668888999999999999999 5788888999997543     578889999999999988889999999999999999


Q ss_pred             HHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          286 RLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       286 ~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      +.++.|+.-.|.-|..++..+-.+.
T Consensus       152 rime~GselSKtvAtfIlqKIL~dd  176 (268)
T 2fv2_A          152 RIMESGSELSKTVATFILQKILLDD  176 (268)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHSH
T ss_pred             HHHhhccHHHHHHHHHHHHHHhccc
Confidence            9999999999999999988875444

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.26  E-value=0.0059  Score=63.65  Aligned_cols=315  Identities=8%  Similarity=0.019  Sum_probs=162.7

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCC-----hhhHHHHH--hcCChHHHHH-------hhCCCCH-------
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSS-----LKTRSEFA--AAGVVQPLVL-------MLVSPNL-------   82 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~-----~~~~~~~~--~~g~v~~Lv~-------~L~~~~~-------   82 (375)
                      .+.++.|+..++++++..+..++.++..++....     ++.+..+.  -....+.+++       .+..+..       
T Consensus       122 p~ll~~L~~~l~s~~~~~~~~aL~~l~~i~~~~~~~~~~~~~~~~l~~~l~~~~~~ll~~~~~~~~~l~~~~~~~~~~~~  201 (960)
T 1wa5_C          122 PTLLSDLASRLSNDDMVTNKGVLTVAHSIFKRWRPLFRSDELFLEIKLVLDVFTAPFLNLLKTVDEQITANENNKASLNI  201 (960)
T ss_dssp             TTHHHHHHTTCCSSCTTHHHHHHHHHHHHHGGGTTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCC--CHHHHH
T ss_pred             hHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHH
Confidence            3567888888888888888889999999887430     12222111  0112333333       3444321       


Q ss_pred             --HHHHHHHHHHHHhhcc-Chh-hHHHHHHcCChHHHHHhhcCC------C---------hHHHHHHHHHHHHhhccCCC
Q 017249           83 --DAIESSLLALLNLAVR-NER-NKVKIATAGAIPPLVELLKFQ------N---------GTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        83 --~~~~~a~~~L~~L~~~-~~~-~r~~i~~~g~i~~Lv~lL~~~------~---------~~~~~~a~~~L~~Ls~~~~~  143 (375)
                        ++...+++++..+... .+. ....+  ...++.+..++...      +         ..++..++.+|..+..... 
T Consensus       202 ~~~~~~~~~k~~~~l~~~~~~~~~~~~~--~~~~~~~~~~l~~~~p~~~~d~d~~~~~~~~~vk~~~~~~l~~l~~~~~-  278 (960)
T 1wa5_C          202 LFDVLLVLIKLYYDFNCQDIPEFFEDNI--QVGMGIFHKYLSYSNPLLEDPDETEHASVLIKVKSSIQELVQLYTTRYE-  278 (960)
T ss_dssp             HHHHHHHHHHHHHHHHSSCCCHHHHHTH--HHHHHHHHHHHSCCSCCCC------CCCHHHHHHHHHHHHHHHHHHHCH-
T ss_pred             HHHHHHHHHHHHHHHhhccchHHHHHHH--HHHHHHHHHHHcCCCCcccCCcccccccHHHHHHHHHHHHHHHHHHHHH-
Confidence              2333466666665421 111 11111  12235555655331      1         2356777778777764322 


Q ss_pred             hhHHH--hcCChHHHHHHhc-----cCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHH-----HHhh--hc-----
Q 017249          144 KPAIA--ASGAAPLLVQILH-----SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI-----NLLK--DC-----  204 (375)
Q Consensus       144 ~~~i~--~~~~l~~L~~lL~-----~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv-----~ll~--~~-----  204 (375)
                       ..+.  -...++..++.+.     ..+..+...++..+..++..+.....+...+.++.++     ..+.  ..     
T Consensus       279 -~~f~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~fl~~~~~~~~~~~~~~~~~~l~~li~~~i~~~m~~~~~d~e~w  357 (960)
T 1wa5_C          279 -DVFGPMINEFIQITWNLLTSISNQPKYDILVSKSLSFLTAVTRIPKYFEIFNNESAMNNITEQIILPNVTLREEDVELF  357 (960)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHHCCSCTTSHHHHHHHHHHHHHHHTSHHHHGGGCSHHHHHHHHHHTHHHHHSCCGGGTTTT
T ss_pred             -HHHHHHHHHHHHHHHHHHHhcCCCcCcHHHHHHHHHHHHHHhCcHhHHHHHcCchHHHHHHHHHhHHhcCCCHHHHHHH
Confidence             1111  1234555555554     2346778888888887765433222221112333333     2221  00     


Q ss_pred             --------------ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc------cCChHHHHHHHHHHHHhc
Q 017249          205 --------------KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE------DGSLVSTQHAVGALLSLC  264 (375)
Q Consensus       205 --------------~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~------~~~~~~~~~a~~~L~~l~  264 (375)
                                    ......+..|..+|..++..-.  +.++  ...++.+.+.+.      +.+-..++.|+.++..++
T Consensus       358 ~~dp~e~i~~d~e~~d~~s~R~aa~~~L~~l~~~~~--~~v~--~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia  433 (960)
T 1wa5_C          358 EDDPIEYIRRDLEGSDTDTRRRACTDFLKELKEKNE--VLVT--NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALA  433 (960)
T ss_dssp             TTCHHHHHHHHHHC----CHHHHHHHHHHHHHHHCH--HHHH--HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHhccCcccccCcHHHHHHHHHHHHHHcc--hhHH--HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHH
Confidence                          0011244556666666664322  1222  123333444444      344567889999999997


Q ss_pred             ccCc--HHHHHHHHH-cCChHH----HHHHhhhC---CHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCCh
Q 017249          265 QSCR--DKYRQLILK-EGAIPG----LLRLTVEG---TFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       265 ~~~~--~~~~~~l~~-~g~v~~----L~~ll~~~---~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      .+..  ......... ..+.+.    ++..+.+.   +|.+|..|+++|..+++.-+. -.-..+++.++..|.   +..
T Consensus       434 ~~~~~~~~~~~~~~~~~~l~~~l~~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~~~-~~l~~~l~~l~~~L~---d~~  509 (960)
T 1wa5_C          434 INGNITNAGVSSTNNLLNVVDFFTKEIAPDLTSNNIPHIILRVDAIKYIYTFRNQLTK-AQLIELMPILATFLQ---TDE  509 (960)
T ss_dssp             BSSCCBTTBCCCBCTTCCHHHHHHHHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGSCH-HHHHHHHHHHHHHTT---CSC
T ss_pred             HHhccccCCcccccccccHHHHHHHHhHHHhcCCCCCCceehHHHHHHHHHHHhhCCH-HHHHHHHHHHHHHhC---CCC
Confidence            5421  000000000 012222    23334555   899999999999999876422 233446677776664   445


Q ss_pred             HHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQ  350 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~  350 (375)
                      .+.+..|..+|+.|..
T Consensus       510 ~~V~~~A~~Al~~~~~  525 (960)
T 1wa5_C          510 YVVYTYAAITIEKILT  525 (960)
T ss_dssp             HHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHHHHh
Confidence            8999999999999875

>1wa5_C Importin alpha RE-exporter; nuclear transport/complex, nuclear transport, exportin, RAN GTPase, protein transport; HET: GTP; 2.0A {Saccharomyces cerevisiae} SCOP: a.118.1.1 PDB: 1z3h_A

Probab=97.22  E-value=0.061  Score=55.98  Aligned_cols=253  Identities=14%  Similarity=0.096  Sum_probs=142.9

Q ss_pred             HHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC------CCCHHHHHHHHHHHHHhhccCh--h----------
Q 017249           40 ETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV------SPNLDAIESSLLALLNLAVRNE--R----------  101 (375)
Q Consensus        40 ~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~------~~~~~~~~~a~~~L~~L~~~~~--~----------  101 (375)
                      ..+..|..+|..++... +   +.+. .-+++.+.+.+.      +.+...++.|+.+++.++.+..  .          
T Consensus       376 s~R~aa~~~L~~l~~~~-~---~~v~-~~~l~~i~~~l~~~~~~~~~~w~~reaal~algaia~~~~~~~~~~~~~~~~~  450 (960)
T 1wa5_C          376 TRRRACTDFLKELKEKN-E---VLVT-NIFLAHMKGFVDQYMSDPSKNWKFKDLYIYLFTALAINGNITNAGVSSTNNLL  450 (960)
T ss_dssp             CHHHHHHHHHHHHHHHC-H---HHHH-HHHHHHHHHHHHHHHC----CHHHHHHHHHHHHHHHBSSCCBTTBCCCBCTTC
T ss_pred             CcHHHHHHHHHHHHHHc-c---hhHH-HHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHHHhccccCCcccccccc
Confidence            45667778888888776 2   1111 012333334444      5567889999999999975311  0          


Q ss_pred             hHHHHHHcCChHHHHHhhcCC---ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          102 NKVKIATAGAIPPLVELLKFQ---NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~---~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      .-..+..    ..++..+.++   ++-+|..|++++..++..- ...  .-...++.++..|.+++..++..|+.+|.++
T Consensus       451 ~l~~~l~----~~v~p~l~~~~~~~p~vr~~a~~~lg~~~~~~-~~~--~l~~~l~~l~~~L~d~~~~V~~~A~~Al~~~  523 (960)
T 1wa5_C          451 NVVDFFT----KEIAPDLTSNNIPHIILRVDAIKYIYTFRNQL-TKA--QLIELMPILATFLQTDEYVVYTYAAITIEKI  523 (960)
T ss_dssp             CHHHHHH----HHTHHHHHCSSCSCHHHHHHHHHHHHHTGGGS-CHH--HHHHHHHHHHHHTTCSCHHHHHHHHHHHHHH
T ss_pred             cHHHHHH----HHhHHHhcCCCCCCceehHHHHHHHHHHHhhC-CHH--HHHHHHHHHHHHhCCCChhHHHHHHHHHHHH
Confidence            1111111    1223334555   8899999999999998753 122  2345678888888888899999999999999


Q ss_pred             ccCCC---------Cchhhhh--cCCcHHHHHHhhhcc---cchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHH
Q 017249          179 STCKE---------NSSPILD--ATAVPPLINLLKDCK---KYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVE  243 (375)
Q Consensus       179 ~~~~~---------~~~~i~~--~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~  243 (375)
                      +...+         .+..+..  ...++.|+.++....   ......+.+..+|..++.. .+......  ...++.|+.
T Consensus       524 ~~~~~~~~~~~~~~~~~~l~p~l~~ll~~L~~ll~~~~~~~~~~~~~e~l~~al~~vv~~~~~~~~p~~--~~l~~~L~~  601 (960)
T 1wa5_C          524 LTIRESNTSPAFIFHKEDISNSTEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF--PQLLAQFIE  601 (960)
T ss_dssp             TTCBSCSSSCCBSSCGGGTTTTHHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH--HHHHHHHHH
T ss_pred             HhcccccccccccccHHHhhhhHHHHHHHHHHHHHhccCCCCcccccHHHHHHHHHHHHHHHHhhhhHH--HHHHHHHHH
Confidence            86421         1222221  245666666666531   0000123344555444321 11111111  124444544


Q ss_pred             Hhc----c-CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          244 TVE----D-GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       244 lL~----~-~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      .+.    + .++..+..++.+|..++....++... -+...++|.+..++........+.+..++..+.
T Consensus       602 ~l~~~~~~~~~~~~~~~~~e~l~~l~~~~~~~~~~-~~~~~~~p~~~~iL~~~~~~~~~~~~~i~~~l~  669 (960)
T 1wa5_C          602 IVTIMAKNPSNPRFTHYTFESIGAILNYTQRQNLP-LLVDSMMPTFLTVFSEDIQEFIPYVFQIIAFVV  669 (960)
T ss_dssp             HHHHHTTSCCCHHHHHHHHHHHHHHHHTSCGGGHH-HHHHHHHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHHhCCCCcHHHHHHHHHHHHHHhcCCcchHH-HHHHHHHHHHHHHHHhhhHhhHHHHHHHHHHHH
Confidence            442    2 34566677888888887663332222 234556788888777665666666776666554

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=97.16  E-value=0.02  Score=50.30  Aligned_cols=187  Identities=14%  Similarity=0.127  Sum_probs=123.8

Q ss_pred             HHHHhcCCCHHHHHHHHHHHHHHHhhCChh-hHHHHHh-c-CChHHHHHhhCCCCHHHHHHHHHHHHHhhccCh-----h
Q 017249           30 LSDKLINGDLETKIEAARDIRKVVKKSSLK-TRSEFAA-A-GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNE-----R  101 (375)
Q Consensus        30 Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~-~~~~~~~-~-g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~-----~  101 (375)
                      |-+.|.+.++..+.+|+..+..+....+.. ..+.... . ...+.+-..+.+.+..++..++.+|..++....     .
T Consensus        14 l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~~~~   93 (278)
T 4ffb_C           14 LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSSLKN   93 (278)
T ss_dssp             HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---CCH
T ss_pred             HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhccc
Confidence            668899999999999999999988765111 1111111 2 345667778889999999999999988874311     1


Q ss_pred             hHHHHHHcCChHHHHHh-hcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          102 NKVKIATAGAIPPLVEL-LKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~l-L~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      .+....-..+++.|+.- +.+..+.++..+..++..++........     .++.+...+.+.++.++..++..|..+..
T Consensus        94 ~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~Knpkv~~~~l~~l~~~l~  168 (278)
T 4ffb_C           94 AHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKKLPKLIAAAANCVYELMA  168 (278)
T ss_dssp             HHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCSCHHHHHHHHHHHHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhccCHHHHHHHHHHHHHHHH
Confidence            11222234567888864 7888899999999998887654332222     24667777888999999999999887753


Q ss_pred             C--CCCch-hhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhC
Q 017249          181 C--KENSS-PILDATAVPPLINLLKDCKKYSKFAEKATALLEILSS  223 (375)
Q Consensus       181 ~--~~~~~-~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~  223 (375)
                      .  ..... ...-..+++.+..++.+.  +..++..|..++..+-.
T Consensus       169 ~fg~~~~~~k~~l~~i~~~l~k~l~d~--~~~VR~aA~~l~~~ly~  212 (278)
T 4ffb_C          169 AFGLTNVNVQTFLPELLKHVPQLAGHG--DRNVRSQTMNLIVEIYK  212 (278)
T ss_dssp             HHTTTTCCHHHHHHHHGGGHHHHHTCS--SHHHHHHHHHHHHHHHT
T ss_pred             HhCCCcCCchhHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHHH
Confidence            2  11111 101112455666677665  56789989888876653

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=97.16  E-value=0.0033  Score=59.68  Aligned_cols=239  Identities=12%  Similarity=0.038  Sum_probs=154.2

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh-----C-------CC-CHHHHHHHHHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML-----V-------SP-NLDAIESSLLAL   92 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L-----~-------~~-~~~~~~~a~~~L   92 (375)
                      ....|+.-|-++.++++.=|+..|+.+.... ..........+- +..+.++     .       +. -..||+.++.+|
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~h-G~GAGR~~~~N~-DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtL  252 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEI-DNGGDIQIRVDS-KLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLL  252 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHC-C----CCCCCCT-THHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHh-ccCCceeccccH-HHHHHHHHHHHhccccccccCeeeeehHHHHHHHH
Confidence            6678888888999999999999999998665 211111111111 2222222     1       11 257899999999


Q ss_pred             HHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH-hcCChHHHHHHhccCCHHHHHHH
Q 017249           93 LNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA-ASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        93 ~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~-~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                      +.+ ..-+..      ..++..|+..+..+.=+++..++-.|..+      +..+. -.++++.++..|.+.+.+++..|
T Consensus       253 GaL-~hLp~e------~~IL~qLV~~l~~~~WEVRHGGLLGLKYL------~DLL~~Ld~Vv~aVL~GL~D~DDDVRAVA  319 (800)
T 3oc3_A          253 SRI-YPLIGP------NDIIEQLVGFLDSGDWQVQFSGLIALGYL------KEFVEDKDGLCRKLVSLLSSPDEDIKLLS  319 (800)
T ss_dssp             HHH-TTTSCS------CCHHHHHTTGGGCSCHHHHHHHHHHHHHT------GGGCCCHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred             HHH-HhCChh------HHHHHHHHhhcCCCCeeehhhhHHHHHHH------HHHHHHHHHHHHHHHhhcCCcccHHHHHH
Confidence            988 543332      33444555555666778888888888887      11111 24567788888899999999999


Q ss_pred             HHHHHHhccCCCCchhhhhcCCcHHHHHHhhh----cccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc
Q 017249          172 VTALHYLSTCKENSSPILDATAVPPLINLLKD----CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVED  247 (375)
Q Consensus       172 ~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~----~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~  247 (375)
                      +.+|..++ .+         +.++.++.++.+    -++-..-.......|..|+..+..   .......+|.|.+++++
T Consensus       320 AetLiPIA-~p---------~~l~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~~---a~~dp~LVPRL~PFLRH  386 (800)
T 3oc3_A          320 AELLCHFP-IT---------DSLDLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENPE---LSIPPERLKDIFPCFTS  386 (800)
T ss_dssp             HHHHTTSC-CS---------STHHHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCTT---CCCCSGGGGGTGGGGTC
T ss_pred             HHHhhhhc-ch---------hhHHHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCcc---cccChHHHHHHHhhhcC
Confidence            99999888 22         234444444332    211111123455667777765532   11245789999999999


Q ss_pred             CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHH-HhhhCCHHHHHHHHHHHH
Q 017249          248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR-LTVEGTFEAQERARTLLD  304 (375)
Q Consensus       248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~-ll~~~~~~~~~~A~~~L~  304 (375)
                      .-+.+|..++.+|..+.  . ..         ++..+.+ ++-+.++++++.+..+..
T Consensus       387 tITSVR~AVL~TL~tfL--~-~~---------~LRLIFQNILLE~neeIl~lS~~VWk  432 (800)
T 3oc3_A          387 PVPEVRTSILNMVKNLS--E-ES---------IDFLVAEVVLIEEKDEIREMAIKLLK  432 (800)
T ss_dssp             SSHHHHHHHHHHTTTCC--C-HH---------HHHHHHHHHHHCSCHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHHH--h-hh---------HHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence            99999999999998887  1 11         2333333 666788888888888775

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.99  E-value=0.094  Score=54.44  Aligned_cols=220  Identities=11%  Similarity=0.038  Sum_probs=127.5

Q ss_pred             HHHHHHHH-hcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhccC----
Q 017249           26 LIEELSDK-LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVRN----   99 (375)
Q Consensus        26 ~l~~Lv~~-L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~~----   99 (375)
                      .+..++.. ..+++++.+..|-..|.++-..+           ++...+..+|. +.+..+|..|+..|.+.....    
T Consensus        25 ~l~~~l~~l~~~~~~~~r~~A~~~L~~~~~~p-----------~~~~~~~~lL~~~~~~~vr~~aa~~L~~~i~~~w~~l   93 (963)
T 2x19_B           25 NVEKALHQLYYDPNIENKNLAQKWLMQAQVSP-----------QAWHFSWQLLQPDKVPEIQYFGASALHIKISRYWSDI   93 (963)
T ss_dssp             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHCGGGS
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHhcCH-----------HHHHHHHHHhcCCCchHHHHHHHHHHHHHHHhCHHhC
Confidence            35555555 44688999999888887765544           34556666664 457899999999999876432    


Q ss_pred             -hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhcc-----CCHHHHHHHHH
Q 017249          100 -ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHS-----GSVQGRVDAVT  173 (375)
Q Consensus       100 -~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~  173 (375)
                       ++.+..+.+ ..++.+... .+.++.++...+.++..++..+-..   ...+.++.|+..+++     ++......++.
T Consensus        94 ~~~~~~~ir~-~ll~~l~~~-~~~~~~ir~kl~~~la~i~~~~~p~---~Wp~~l~~l~~~~~~~~~~~~~~~~~~~~l~  168 (963)
T 2x19_B           94 PTDQYESLKA-QLFTQITRF-ASGSKIVLTRLCVALASLALSMMPD---AWPCAVADMVRLFQAEDSPVDGQGRCLALLE  168 (963)
T ss_dssp             CGGGHHHHHH-HHHHHHHHT-TTSCHHHHHHHHHHHHHHHHHHTTT---TSTTHHHHHHHHHCC------CHHHHHHHHH
T ss_pred             CHHHHHHHHH-HHHHHHHHH-cCCCHHHHHHHHHHHHHHHHHhCcc---ccchHHHHHHHHHhhhccCCCcHHHHHHHHH
Confidence             233333333 233344432 1235788989999999988752111   146788899998876     25556777777


Q ss_pred             HHHHhccC-CCC-----c-hhhhh--cCCcHHHH----HHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHH
Q 017249          174 ALHYLSTC-KEN-----S-SPILD--ATAVPPLI----NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILT  240 (375)
Q Consensus       174 ~L~~L~~~-~~~-----~-~~i~~--~g~i~~Lv----~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~  240 (375)
                      +|..++.. .+.     + ..+.+  ...++.++    .++........+...++.++.........   +......++.
T Consensus       169 iL~~l~ee~~~~~~~~~~r~~~~~~l~~~~~~i~~ll~~~l~~~~~~~~~~~~~l~~l~~wi~~~~~---~~~~~~ll~~  245 (963)
T 2x19_B          169 LLTVLPEEFQTSRLPQYRKGLVRTSLAVECGAVFPLLEQLLQQPSSPSCVRQKVLKCFSSWVQLEVP---LQDCEALIQA  245 (963)
T ss_dssp             HHHHHHHHHTTCCC---------CCSGGGHHHHHHHHHHHHSCTTCCHHHHHHHHHHHHHHHTSSCC---GGGTHHHHHH
T ss_pred             HHHhCHHHHhcccCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHHHcCCCC---cccchHHHHH
Confidence            77777631 000     1 11100  12234444    34433322223556666666443321111   1112345666


Q ss_pred             HHHHhccCChHHHHHHHHHHHHhccc
Q 017249          241 LVETVEDGSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       241 Lv~lL~~~~~~~~~~a~~~L~~l~~~  266 (375)
                      ++..+.  ++..+..|+.++..+...
T Consensus       246 l~~~l~--~~~~~~~a~~~l~~i~~~  269 (963)
T 2x19_B          246 AFAALQ--DSELFDSSVEAIVNAISQ  269 (963)
T ss_dssp             HHHHTT--STTTHHHHHHHHHHHHTC
T ss_pred             HHHHhC--CchHHHHHHHHHHHHHcc
Confidence            666664  466888999999988774

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.93  E-value=0.024  Score=49.21  Aligned_cols=179  Identities=15%  Similarity=0.144  Sum_probs=122.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH----hhCCCCHHHHHHHHHHHHHhhccC--
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL----MLVSPNLDAIESSLLALLNLAVRN--   99 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~----~L~~~~~~~~~~a~~~L~~L~~~~--   99 (375)
                      .=+.+...|-+.|...+..++..|....... ++  ..+.   .++.+++    .+.+.+..+...++..|..+...-  
T Consensus        47 ~~~~~~~~lfs~d~k~~~~ale~L~~~l~~~-~~--~~~~---~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~  120 (266)
T 2of3_A           47 AKVSLMSQLFHKDFKQHLAALDSLVRLADTS-PR--SLLS---NSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRD  120 (266)
T ss_dssp             BCHHHHHHHTCSCHHHHHHHHHHHHHHHHHC-HH--HHHH---THHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHhcCCCHHHHHHHHHHHHHHhhhC-hH--HHHH---HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHh
Confidence            4456777777889999999999998887665 22  2221   2333333    344778889888888888875310  


Q ss_pred             hhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          100 ERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       100 ~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      ..++-.-.+ .-.+|.|+.-+.++.+.+|..+-.++..+...      .-....++.+++-+++.|...+..++..+..+
T Consensus       121 ~~y~~~~~ea~~~lP~LveKlGd~k~~vR~~~r~il~~l~~v------~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~l  194 (266)
T 2of3_A          121 TETPMSQEEVSAFVPYLLLKTGEAKDNMRTSVRDIVNVLSDV------VGPLKMTPMLLDALKSKNARQRSECLLVIEYY  194 (266)
T ss_dssp             TTCCCCHHHHHHHHHHHHHGGGCSSHHHHHHHHHHHHHHHHH------HCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHH
T ss_pred             ccccchHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHH------CCHHHHHHHHHHHHccCCHHHHHHHHHHHHHH
Confidence            111111112 33579999999999999999988888777532      11234577888889999999999999999888


Q ss_pred             ccCCCCchhhhhcCCc---HHHHHHhhhcccchHHHHHHHHHHHHhh
Q 017249          179 STCKENSSPILDATAV---PPLINLLKDCKKYSKFAEKATALLEILS  222 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i---~~Lv~ll~~~~~~~~~~~~a~~~L~~l~  222 (375)
                      -......    ...++   +.+.+++.+.  +..++..|+.++..+-
T Consensus       195 i~~~G~~----~~~~l~~~~~ia~ll~D~--d~~VR~aAl~~lve~y  235 (266)
T 2of3_A          195 ITNAGIS----PLKSLSVEKTVAPFVGDK--DVNVRNAAINVLVACF  235 (266)
T ss_dssp             HHHHCSG----GGGGGCHHHHHGGGGGCS--SHHHHHHHHHHHHHHH
T ss_pred             HHhcCCC----ccccccchHHHHHHHcCC--CHHHHHHHHHHHHHHH
Confidence            6432221    12367   8888888875  5578888888776443

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.72  E-value=0.17  Score=52.70  Aligned_cols=253  Identities=12%  Similarity=0.032  Sum_probs=138.5

Q ss_pred             HHHHHHHHHHHHHHhhCChhh-HHHHHh---------cCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhcc------
Q 017249           40 ETKIEAARDIRKVVKKSSLKT-RSEFAA---------AGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVR------   98 (375)
Q Consensus        40 ~~~~~a~~~l~~l~~~~~~~~-~~~~~~---------~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~------   98 (375)
                      +.....++.+..++... ... .+.+.+         ...++.++.+...     .+.++...++..+..++..      
T Consensus       311 ~~~~~l~~l~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~~l~~ll~~~~~~~~~~~~~~v~~~~l~fw~~l~~~~~~~~~  389 (971)
T 2x1g_F          311 DIIVHIYMLFVSSVERH-STLLLSGITSADPELSILVHRIVQEILHCTDKPGIYPVEESCSTMALAFWYMLQDEVFAMSN  389 (971)
T ss_dssp             HHHHHHHHHHHHHHHHT-HHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHCSSCTTTTCTTHHHHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHHHH-HHHHHHHhccCcccccHHHHHHHHHHHHHHcCCCCCCcchhhhHHHHHHHHHHHHHHHhccc
Confidence            56666677777766543 211 100000         1345555655533     3567888888887776541      


Q ss_pred             ---ChhhHHHHHH--cCChHHHHHhhcCCCh---------------HHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH
Q 017249           99 ---NERNKVKIAT--AGAIPPLVELLKFQNG---------------TLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ  158 (375)
Q Consensus        99 ---~~~~r~~i~~--~g~i~~Lv~lL~~~~~---------------~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~  158 (375)
                         .+..+..+..  ...++.++..+..++.               ..|..+..+|..++..-. ...+  .-.++.+-.
T Consensus       390 ~~~~~~~~~~~~~~~~~ll~~l~~~~~~p~~~~~~~~d~~e~~~f~~~R~~~~~~l~~~~~~~~-~~~l--~~~~~~l~~  466 (971)
T 2x1g_F          390 DEQKHKCWEYIKPLYAHLTRILVRKSEQPDEKSLAKWSSDDLECFRCYRQDISDTFMYCYDVLN-DYIL--EILAAMLDE  466 (971)
T ss_dssp             ----CHHHHHHHHHHHHHHHHHHHHTSCCCTTTTSCSCHHHHHHHHHHHHHHHHHHHHHHTTCT-THHH--HHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHHHHHHHHhcCCCcccccccCHhHHHHHHHHHHHHHHHHHHHHHHHh-HHHH--HHHHHHHHH
Confidence               1111111111  2334555555532211               345666667777665332 1111  112233333


Q ss_pred             Hhcc-----CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh---cccchHHHHHHHHHHHHhhCChhhhHH
Q 017249          159 ILHS-----GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD---CKKYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       159 lL~~-----~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                      .+.+     .+...++.++.++..++.......    ...++.++.++..   .+.++.++..++++++.++..-.....
T Consensus       467 ~l~~~~~~~~~w~~~eaal~~l~~iae~~~~~~----~~~l~~l~~~l~~l~~~d~~~~vr~~a~~~l~~~~~~l~~~~~  542 (971)
T 2x1g_F          467 AIADLQRHPTHWTKLEACIYSFQSVAEHFGGEE----KRQIPRLMRVLAEIPYEKLNVKLLGTALETMGSYCNWLMENPA  542 (971)
T ss_dssp             HHHHHHHCTTCCHHHHHHHHHHHHTTTC----------CHHHHHHHHHHHSCTTTSCHHHHHHHHHHHHHTHHHHC----
T ss_pred             HHHhccCCCCcHHHHHHHHHHHHHHHhhcChhh----hHHHHHHHHHHHhcCccccCHHHHHHHHHHHHHHHHHHhcCHH
Confidence            3433     456788999999999986532111    1234444444321   122567888899999988743111112


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhh--CCHHHHHHHHHHHHHh
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLL  306 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l  306 (375)
                      .+  ...++.|+..| +  +.++..|++++.++|....    ..+..  ..++..|..++..  .+...+..+..++..+
T Consensus       543 ~l--~~vl~~l~~~l-~--~~v~~~A~~al~~l~~~~~----~~l~p~~~~ll~~l~~~l~~~~~~~~~~~~~~~ai~~i  613 (971)
T 2x1g_F          543 YI--PPAINLLVRGL-N--SSMSAQATLGLKELCRDCQ----LQLKPYADPLLNACHASLNTGRMKNSDSVRLMFSIGKL  613 (971)
T ss_dssp             CH--HHHHHHHHHHH-H--SSCHHHHHHHHHHHHHHCH----HHHHHHHHHHHHHHHHHHHSTTSCHHHHHHHHHHHHHH
T ss_pred             HH--HHHHHHHHHHh-C--hHHHHHHHHHHHHHHHHHH----HhccccHHHHHHHHHHHHcCCCCChHHHHHHHHHHHHH
Confidence            22  24566677777 3  6789999999999997653    23332  4567777777776  3578888888888888


Q ss_pred             hcC
Q 017249          307 RDT  309 (375)
Q Consensus       307 ~~~  309 (375)
                      ...
T Consensus       614 ~~~  616 (971)
T 2x1g_F          614 MSL  616 (971)
T ss_dssp             HHT
T ss_pred             HHh
Confidence            664

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=96.66  E-value=0.0021  Score=55.48  Aligned_cols=179  Identities=17%  Similarity=0.080  Sum_probs=93.1

Q ss_pred             HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCCh
Q 017249           33 KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAI  112 (375)
Q Consensus        33 ~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i  112 (375)
                      ++.++++.++..++..+      .             ...|..++.++++.++..++..|   .               .
T Consensus        58 ll~d~~~~VR~~AA~~l------~-------------~~~l~~L~~D~~~~VR~~aA~~L---~---------------~  100 (244)
T 1lrv_A           58 YLADPFWERRAIAVRYS------P-------------VEALTPLIRDSDEVVRRAVAYRL---P---------------R  100 (244)
T ss_dssp             GTTCSSHHHHHHHHTTS------C-------------GGGGGGGTTCSSHHHHHHHHTTS---C---------------S
T ss_pred             HhcCCCHHHHHHHHHhC------C-------------HHHHHHHccCcCHHHHHHHHHHC---C---------------H
Confidence            44677888887777642      1             22356667777777777777532   1               1


Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcC
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDAT  192 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g  192 (375)
                      +.|..+++++++.+|..++..   +.              .+.|..++++++..++..++..   +.             
T Consensus       101 ~~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~d~~VR~~aA~~---l~-------------  147 (244)
T 1lrv_A          101 EQLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADRDYLVRAYVVQR---IP-------------  147 (244)
T ss_dssp             GGGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCSSHHHHHHHHHH---SC-------------
T ss_pred             HHHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCCCHHHHHHHHHh---cC-------------
Confidence            356666777777777666653   21              1234555666777777766652   11             


Q ss_pred             CcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHH-----HHhcccC
Q 017249          193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGAL-----LSLCQSC  267 (375)
Q Consensus       193 ~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~  267 (375)
                       .+.+..++.+.  +..++..+...   +.               .+.+..++.+++..++..++..+     ..+..+.
T Consensus       148 -~~~l~~l~~D~--d~~VR~~aa~~---l~---------------~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~  206 (244)
T 1lrv_A          148 -PGRLFRFMRDE--DRQVRKLVAKR---LP---------------EESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDP  206 (244)
T ss_dssp             -GGGGGGTTTCS--CHHHHHHHHHH---SC---------------GGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCS
T ss_pred             -HHHHHHHHcCC--CHHHHHHHHHc---CC---------------HHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCC
Confidence             11222233332  33455444332   10               12222344555556665555432     2223333


Q ss_pred             cHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249          268 RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  303 (375)
Q Consensus       268 ~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L  303 (375)
                      .+..+..+.+.-..+.|..+ .+.++.|++.|...|
T Consensus       207 d~~VR~~aa~~l~~~~L~~L-~D~~~~VR~aa~~~L  241 (244)
T 1lrv_A          207 DWTVRLAAVEHASLEALREL-DEPDPEVRLAIAGRL  241 (244)
T ss_dssp             SHHHHHHHHHHSCHHHHHHC-CCCCHHHHHHHHCCC
T ss_pred             CHHHHHHHHHcCCHHHHHHc-cCCCHHHHHHHHHHh
Confidence            34444444443334555555 777778877776543

>2x1g_F Cadmus; transport protein, developmental protein, mRNA processing, nuclear transport, mRNA splicing, mRNA transport; 3.35A {Drosophila melanogaster}

Probab=96.65  E-value=0.11  Score=54.07  Aligned_cols=294  Identities=10%  Similarity=0.056  Sum_probs=155.4

Q ss_pred             CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHH--cCChHH
Q 017249           37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIAT--AGAIPP  114 (375)
Q Consensus        37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~--~g~i~~  114 (375)
                      .++.++..+++++..++..- ..+...+  ..+++.|+..|.   +.++..|+.++.+++.+   ++..+..  ...+..
T Consensus       518 ~~~~vr~~a~~~l~~~~~~l-~~~~~~l--~~vl~~l~~~l~---~~v~~~A~~al~~l~~~---~~~~l~p~~~~ll~~  588 (971)
T 2x1g_F          518 LNVKLLGTALETMGSYCNWL-MENPAYI--PPAINLLVRGLN---SSMSAQATLGLKELCRD---CQLQLKPYADPLLNA  588 (971)
T ss_dssp             SCHHHHHHHHHHHHHTHHHH-C----CH--HHHHHHHHHHHH---SSCHHHHHHHHHHHHHH---CHHHHHHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHHHHHH-hcCHHHH--HHHHHHHHHHhC---hHHHHHHHHHHHHHHHH---HHHhccccHHHHHHH
Confidence            37889999999999998653 1221111  134666777773   67899999999999964   3344432  345566


Q ss_pred             HHHhhcCC--ChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHh----ccC--CHHHHHHHHHHHHHhc---cC
Q 017249          115 LVELLKFQ--NGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQIL----HSG--SVQGRVDAVTALHYLS---TC  181 (375)
Q Consensus       115 Lv~lL~~~--~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL----~~~--~~~~~~~a~~~L~~L~---~~  181 (375)
                      |..++.++  +...+..+..++..++..-+  .+... -...+++++..+    ...  +.........++..|+   ..
T Consensus       589 l~~~l~~~~~~~~~~~~~~~ai~~i~~~~~~~~~~~~-~~~ll~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~L~~~~~~  667 (971)
T 2x1g_F          589 CHASLNTGRMKNSDSVRLMFSIGKLMSLLRPEEIPKY-LDIIVSPCFEELQAICQADSKTPAARIRTIFRLNMISTLFSS  667 (971)
T ss_dssp             HHHHHHSTTSCHHHHHHHHHHHHHHHHTSCTTHHHHH-HHHHHHHHHHHHHHHHTC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCCChHHHHHHHHHHHHHHHhCCHHHHHHH-HHHHHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHhh
Confidence            67777764  57788888899988876422  11111 123334444433    322  2222333333333332   21


Q ss_pred             --C---CC------chhh--hhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHh---
Q 017249          182 --K---EN------SSPI--LDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETV---  245 (375)
Q Consensus       182 --~---~~------~~~i--~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL---  245 (375)
                        +   +.      ...+  +....++.+..++.....+..+.+.++++++.++..-..  .+   ...++.+++++   
T Consensus       668 l~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~l~~~~~~~~v~e~~~~~~~~~~~~~~~--~~---~p~l~~~~~~l~~~  742 (971)
T 2x1g_F          668 LNTDVDEQATDQPIVQPVLLVMQRTMPIFKRIAEMWVEEIDVLEAACSAMKHAITNLRS--SF---QPMLQDLCLFIVAS  742 (971)
T ss_dssp             HTC-------------CCHHHHHTTHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHC-------CTHHHHHHHHHHHH
T ss_pred             cCCCcCcccccccCCCchHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHhhhh--hc---cccHHHHHHHHHHH
Confidence              1   00      0111  224678888888765433557889999999987643211  11   12355555554   


Q ss_pred             -ccCChHHHHHHHHHHHHhcccCc--HHHHHHHHH--cCChHHHHHHhhh-------CCHHHHHHHHHHHHHhhcCChhh
Q 017249          246 -EDGSLVSTQHAVGALLSLCQSCR--DKYRQLILK--EGAIPGLLRLTVE-------GTFEAQERARTLLDLLRDTPQEK  313 (375)
Q Consensus       246 -~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~--~g~v~~L~~ll~~-------~~~~~~~~A~~~L~~l~~~~~~~  313 (375)
                       .....   ..+++.+..++..-.  +.....+.+  ...+...+.++..       .+|++++.....+..+..+.+..
T Consensus       743 ~~~~~~---~~~l~l~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~~~pd~~~~~f~ll~~~l~~~p~~  819 (971)
T 2x1g_F          743 FQTRCC---APTLEISKTAIVMFFKDEGCKPLMQQLLREFIQHSFKLFESTPEQNFSNISDTMETFFGCLTQIIKKIPQV  819 (971)
T ss_dssp             CC--CC---HHHHHHHHHHHTTCCC-----HHHHHHHHHHHHHHHHHHTSCTTTHHHHTHHHHHHHHHHHHHHHHSSGGG
T ss_pred             HhcCCc---hHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHHHHHHHHhcccccCCccCchHHHHHHHHHHHHHHhCcHH
Confidence             32221   346666666655321  122222222  1233333443332       37889999999888888777665


Q ss_pred             hhhhhh-HHHH----HHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          314 RLSSSV-LEKI----VYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       314 ~~~~g~-~~~l----~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      ++.... ++.+    +..|..   ..+.+...+...+..++..
T Consensus       820 ~~~s~~~l~~i~~~~~~~l~~---~~~~~~~s~~~fl~~~i~~  859 (971)
T 2x1g_F          820 LEDKTLAYDRLVFYAQRGMTL---PESGAIRNSIQFLTHFVMQ  859 (971)
T ss_dssp             GGCTTSCHHHHHHHHHHHHTS---SCSSHHHHHHHHHHHHHHH
T ss_pred             HcCCcccHHHHHHHHHHHcCC---CCHHHHHHHHHHHHHHHhc
Confidence            543333 3333    333331   1133444555566665544

>3oc3_A Helicase MOT1, MOT1; regulation of transcription, hydrolase-transc complex; HET: MES; 3.10A {Encephalitozoon cuniculi}

Probab=96.53  E-value=0.02  Score=54.52  Aligned_cols=244  Identities=16%  Similarity=0.126  Sum_probs=149.5

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhh--c-------C-CChHHHHHHHHHHHH
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELL--K-------F-QNGTLRELAAAAILT  136 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL--~-------~-~~~~~~~~a~~~L~~  136 (375)
                      ..+.|+.-|-++..++|.-|+-+|+.+.+............  ...-.|+.++  .       + --..+|+.++++|..
T Consensus       175 fcE~L~~DLFdp~WEiRHGAALGLREILR~hG~GAGR~~~~N~DLAvRLLCVLALDRFGDYVSDqVVAPVRETaAQtLGa  254 (800)
T 3oc3_A          175 FFEQISDNLLSYEWYKRHGAFLAFAAMFSEIDNGGDIQIRVDSKLFSKIYEILVTDKFNDFVDDRTVAPVRDAAAYLLSR  254 (800)
T ss_dssp             TTHHHHHHTTCSSHHHHHHHHHHHHHHHHHCC----CCCCCCTTHHHHHHHHHHHBCCBBCSSSSCBCHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCcchhhhhHHHHHHHHHHHHhccCCceeccccHHHHHHHHHHHHhccccccccCeeeeehHHHHHHHHHH
Confidence            46677788888999999999999999875432110000011  2223333333  1       1 136799999999999


Q ss_pred             hhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHH
Q 017249          137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATA  216 (375)
Q Consensus       137 Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~  216 (375)
                      + .+-+..     ..++..|+..+..+.-+++..++..|.++.   +....  -.++++.++.-|.+.  +++++..|..
T Consensus       255 L-~hLp~e-----~~IL~qLV~~l~~~~WEVRHGGLLGLKYL~---DLL~~--Ld~Vv~aVL~GL~D~--DDDVRAVAAe  321 (800)
T 3oc3_A          255 I-YPLIGP-----NDIIEQLVGFLDSGDWQVQFSGLIALGYLK---EFVED--KDGLCRKLVSLLSSP--DEDIKLLSAE  321 (800)
T ss_dssp             H-TTTSCS-----CCHHHHHTTGGGCSCHHHHHHHHHHHHHTG---GGCCC--HHHHHHHHHHHTTCS--SHHHHHHHHH
T ss_pred             H-HhCChh-----HHHHHHHHhhcCCCCeeehhhhHHHHHHHH---HHHHH--HHHHHHHHHhhcCCc--ccHHHHHHHH
Confidence            9 553322     344555555557778899999999999991   11111  134566666666665  4578888888


Q ss_pred             HHHHhhCChhhhHHHhhccCcHHHHHHHhccCC--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHH
Q 017249          217 LLEILSSSEEGRIAITNSDGGILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFE  294 (375)
Q Consensus       217 ~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~  294 (375)
                      +|.-++ .+..    +  ...+..+...|.+-+  .......+..|..|+.... .   .-.....+|.|..++++.-+.
T Consensus       322 tLiPIA-~p~~----l--~~LL~iLWd~L~~LDDLSASTgSVMdLLAkL~s~p~-~---a~~dp~LVPRL~PFLRHtITS  390 (800)
T 3oc3_A          322 LLCHFP-ITDS----L--DLVLEKCWKNIESEELISVSKTSNLSLLTKIYRENP-E---LSIPPERLKDIFPCFTSPVPE  390 (800)
T ss_dssp             HHTTSC-CSST----H--HHHHHHHHHHHHTCCSCCTTHHHHHHHHHHHHHHCT-T---CCCCSGGGGGTGGGGTCSSHH
T ss_pred             Hhhhhc-chhh----H--HHHHHHHHHHhhhhcccchhhHHHHHHHHHHHcCCc-c---cccChHHHHHHHhhhcCCcHH
Confidence            888777 2211    1  234455556664322  2233456667777776652 1   112247899999999999999


Q ss_pred             HHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHH
Q 017249          295 AQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQ  346 (375)
Q Consensus       295 ~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~  346 (375)
                      ||..+..+|..+.        ...++.-+...+..  ...+..++.+.++.+
T Consensus       391 VR~AVL~TL~tfL--------~~~~LRLIFQNILL--E~neeIl~lS~~VWk  432 (800)
T 3oc3_A          391 VRTSILNMVKNLS--------EESIDFLVAEVVLI--EEKDEIREMAIKLLK  432 (800)
T ss_dssp             HHHHHHHHTTTCC--------CHHHHHHHHHHHHH--CSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--------hhhHHHHHHHHHHh--CCcHHHHHHHHHHHH
Confidence            9999999987776        11233333333332  223677777777664

>2of3_A ZYG-9; multifunctional macromolecule, kinetochore, microtubule, XMAP215, STU2, DIS1, microtubule associated protein, structural protein; 1.90A {Caenorhabditis elegans}

Probab=96.49  E-value=0.033  Score=48.36  Aligned_cols=182  Identities=8%  Similarity=0.053  Sum_probs=116.5

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhc-CChHHHHHHhccCCHHHHHHHHHHHHHhccC---CCCchhh
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS-GAAPLLVQILHSGSVQGRVDAVTALHYLSTC---KENSSPI  188 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~-~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~---~~~~~~i  188 (375)
                      +.+...|.+.+..-+..++..|.......+ ...+... ..++.+.-.+.+.+..+...++.+|..+...   .+..-.-
T Consensus        49 ~~~~~~lfs~d~k~~~~ale~L~~~l~~~~-~~~~~~lDll~kw~~lr~~d~N~~v~~~~L~~L~~l~~~l~~~~y~~~~  127 (266)
T 2of3_A           49 VSLMSQLFHKDFKQHLAALDSLVRLADTSP-RSLLSNSDLLLKWCTLRFFETNPAALIKVLELCKVIVELIRDTETPMSQ  127 (266)
T ss_dssp             HHHHHHHTCSCHHHHHHHHHHHHHHHHHCH-HHHHHTHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTTCCCCH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHhhhCh-HHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHhccccchH
Confidence            355666666677777777777766543211 1111111 1233333344577888888888887776421   1111111


Q ss_pred             hh-cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          189 LD-ATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       189 ~~-~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      .+ .-.+|.|+.-+.++  .+.+++.+-.++..++.       +......++.++.-+.+.+...++.++..+..+....
T Consensus       128 ~ea~~~lP~LveKlGd~--k~~vR~~~r~il~~l~~-------v~~~~~v~~~l~~g~ksKN~R~R~e~l~~l~~li~~~  198 (266)
T 2of3_A          128 EEVSAFVPYLLLKTGEA--KDNMRTSVRDIVNVLSD-------VVGPLKMTPMLLDALKSKNARQRSECLLVIEYYITNA  198 (266)
T ss_dssp             HHHHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHH-------HHCHHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC--hHHHHHHHHHHHHHHHH-------HCCHHHHHHHHHHHHccCCHHHHHHHHHHHHHHHHhc
Confidence            11 23678888777655  44677877777776652       1212346677778888889999999999999886543


Q ss_pred             cHHHHHHHHHcCCh---HHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          268 RDKYRQLILKEGAI---PGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       268 ~~~~~~~l~~~g~v---~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      +..      ....+   +.+..++.+.|..+|..|..++..+..+.
T Consensus       199 G~~------~~~~l~~~~~ia~ll~D~d~~VR~aAl~~lve~y~~~  238 (266)
T 2of3_A          199 GIS------PLKSLSVEKTVAPFVGDKDVNVRNAAINVLVACFKFE  238 (266)
T ss_dssp             CSG------GGGGGCHHHHHGGGGGCSSHHHHHHHHHHHHHHHHHH
T ss_pred             CCC------ccccccchHHHHHHHcCCCHHHHHHHHHHHHHHHHHh
Confidence            211      24578   99999999999999999999888776554

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=96.39  E-value=0.16  Score=45.20  Aligned_cols=222  Identities=14%  Similarity=0.074  Sum_probs=151.1

Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH----HHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249           64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK----VKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLS  138 (375)
Q Consensus        64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r----~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  138 (375)
                      +...+.+..|+..|..=+.+.++.+..+..++.......+    ..+.. ...+..|+.-.+  ++++--.+-..|+...
T Consensus        74 i~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gYe--~~diAl~~G~mLReci  151 (341)
T 1upk_A           74 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI  151 (341)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred             HHHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhhc--cchhHhHHHHHHHHHH
Confidence            4456889999999998899999999999999887654332    22222 222333333332  3444445555667776


Q ss_pred             ccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCCchhhhhc---CCcHHHHHHhhhcccchHHHHHH
Q 017249          139 AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDA---TAVPPLINLLKDCKKYSKFAEKA  214 (375)
Q Consensus       139 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~~a  214 (375)
                      .++.....+...+.+..+.+.+..++-++...|..++..|-. +..........   ..+...-+++.+++.  .+++.+
T Consensus       152 r~e~la~~iL~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk~lvaefL~~nyd~Ff~~y~~Ll~S~NY--VTkRQS  229 (341)
T 1upk_A          152 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS  229 (341)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred             HhHHHHHHHhccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccHHHHHHHHHHhHHHHHHHHHHHhcCCcc--hhHHHH
Confidence            666666666667778888899999999999999999987653 33333333332   456677788887753  577889


Q ss_pred             HHHHHHhhCChhhhHHHhh---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc--HHHHHHHHHc--CChHHHHHH
Q 017249          215 TALLEILSSSEEGRIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR--DKYRQLILKE--GAIPGLLRL  287 (375)
Q Consensus       215 ~~~L~~l~~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~~--g~v~~L~~l  287 (375)
                      +..|+.|-.+..+...+..   +..-+..++.+|++.+..+|-+|..++--+..+.+  +.....+...  ..+.-|-.+
T Consensus       230 lKLLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~d~sk~Iq~EAFhVFKvFVANP~K~~~I~~IL~~Nr~kLl~fl~~f  309 (341)
T 1upk_A          230 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  309 (341)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhcCchhchhhhhhhheeeeeeCCCCChHHHHHHHHHHHHHHHHHHhC
Confidence            9999999888777665553   34557788899999999999999999988887643  3444444442  244444443


Q ss_pred             hh
Q 017249          288 TV  289 (375)
Q Consensus       288 l~  289 (375)
                      ..
T Consensus       310 ~~  311 (341)
T 1upk_A          310 QN  311 (341)
T ss_dssp             TT
T ss_pred             CC
Confidence            33

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=96.36  E-value=0.51  Score=44.12  Aligned_cols=130  Identities=18%  Similarity=0.169  Sum_probs=98.2

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      ...++.. .+++...+.-|+..|.++...- |+..+.     ++..++.+..+++..+|.+|++.|-.+|.+  ++-..+
T Consensus        31 y~~Il~~-~kg~~k~K~LaaQ~I~kffk~F-P~l~~~-----Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~--~~i~ki  101 (507)
T 3u0r_A           31 YQVILDG-VKGGTKEKRLAAQFIPKFFKHF-PELADS-----AINAQLDLCEDEDVSIRRQAIKELPQFATG--ENLPRV  101 (507)
T ss_dssp             HHHHHHG-GGSCHHHHHHHHHHHHHHGGGC-GGGHHH-----HHHHHHHHHTCSSHHHHHHHHHHGGGGCCT--TCHHHH
T ss_pred             HHHHHHh-cCCCHHHHHHHHHHHHHHHhhC-hhhHHH-----HHHHHHHHHhcccHHHHHHHHHhhHHHhhh--hhhhhH
Confidence            3444443 3567999999999999999887 666664     478999999999999999999999999986  455454


Q ss_pred             HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249          107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                           ...|+++|...++.-....-.+|..|...++       .+.+..|...+..++..+++.++..|..
T Consensus       102 -----aDvL~QlLqtdd~~E~~~V~~sL~sllk~Dp-------k~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          102 -----ADILTQLLQTDDSAEFNLVNNALLSIFKMDA-------KGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             -----HHHHHHHTTCCCHHHHHHHHHHHHHHHHHCH-------HHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             -----HHHHHHHHhccchHHHHHHHHHHHHHHhcCh-------HHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence                 4589999998877666666667766644332       3556667776666788888888777754

>4ffb_C Protein STU2; tubulin fold, heat repeats, cytoskeleton, microtubule, tubul domain, hydrolase; HET: GTP; 2.88A {Saccharomyces cerevisiae}

Probab=96.35  E-value=0.11  Score=45.38  Aligned_cols=188  Identities=13%  Similarity=0.062  Sum_probs=119.2

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhh--HHHHHH--cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC---
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERN--KVKIAT--AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP---  142 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~--r~~i~~--~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~---  142 (375)
                      +| |-+.|.+.+...|..|+..|..+....+..  ......  ....+.+-..+.+.+..++..++.++..++..-.   
T Consensus        12 lp-l~e~l~sk~WK~R~eale~l~~~~~~~~~~~~~~~~~~~~~~~~~~lkk~l~DsN~~v~~~al~~l~~~~~~~~~~~   90 (278)
T 4ffb_C           12 LP-LEERLTYKLWKARLEAYKELNQLFRNSVGDISRDDNIQIYWRDPTLFAQYITDSNVVAQEQAIVALNSLIDAFASSS   90 (278)
T ss_dssp             CC-HHHHTTCSSHHHHHHHHHHHHHHHHTC----------CCTTSCTHHHHHHTTCSSHHHHHHHHHHHHHHHTTCC---
T ss_pred             CC-HHHhcccCcHHHHHHHHHHHHHHHhhCcccccchhHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhh
Confidence            44 668899999999999999998877643221  111111  2335566677888899999999999998876422   


Q ss_pred             C-hhHH--HhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHH
Q 017249          143 N-KPAI--AASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALL  218 (375)
Q Consensus       143 ~-~~~i--~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L  218 (375)
                      . ....  .....++.|+. .|.+....++..+..++..++........     +++.++..+.+.  .+.++..++..|
T Consensus        91 ~~~~~~~~~~~~~l~~lveK~l~~~k~~~~~~a~~~l~~~~~~~~~~~~-----~~e~l~~~l~~K--npkv~~~~l~~l  163 (278)
T 4ffb_C           91 LKNAHNITLISTWTPLLVEKGLTSSRATTKTQSMSCILSLCGLDTSITQ-----SVELVIPFFEKK--LPKLIAAAANCV  163 (278)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHTSSSSHH-----HHHHHGGGGGCS--CHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhcCcHHH-----HHHHHHHHHhcc--CHHHHHHHHHHH
Confidence            1 1211  23456677775 47778888888888888777643222222     223444445443  456777777777


Q ss_pred             HHhhCC--hh--hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          219 EILSSS--EE--GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       219 ~~l~~~--~~--~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      ..+...  ..  +.+..+  ..+++.+..++.+.++.+|..|..++..+...-
T Consensus       164 ~~~l~~fg~~~~~~k~~l--~~i~~~l~k~l~d~~~~VR~aA~~l~~~ly~~~  214 (278)
T 4ffb_C          164 YELMAAFGLTNVNVQTFL--PELLKHVPQLAGHGDRNVRSQTMNLIVEIYKVT  214 (278)
T ss_dssp             HHHHHHHTTTTCCHHHHH--HHHGGGHHHHHTCSSHHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCcCCchhHH--HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHh
Confidence            765421  11  112222  135567778889999999999999998886654

>2x19_B Importin-13; nuclear transport, protein transport; HET: GTP; 2.80A {Homo sapiens} PDB: 2xwu_B

Probab=96.35  E-value=0.7  Score=47.86  Aligned_cols=138  Identities=12%  Similarity=0.111  Sum_probs=89.3

Q ss_pred             ccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh-cccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHH
Q 017249          161 HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-CKKYSKFAEKATALLEILSSSEEGRIAITNSDGGIL  239 (375)
Q Consensus       161 ~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~  239 (375)
                      .+.+...++.++.++..++......    ....++.++..+.. ..+++.++..++++++.++..-......+  ...++
T Consensus       459 ~~~~w~~~eaal~al~~i~~~~~~~----~~~~l~~l~~~l~~l~~~~~~vr~~~~~~l~~~~~~l~~~~~~l--~~vl~  532 (963)
T 2x19_B          459 EPYSWQHTEALLYGFQSIAETIDVN----YSDVVPGLIGLIPRISISNVQLADTVMFTIGALSEWLADHPVMI--NSVLP  532 (963)
T ss_dssp             CSCCHHHHHHHHHHHHHHTTSCCSS----CCSHHHHHHHHGGGSCCCSHHHHHHHHHHHHHTHHHHHHCHHHH--TTTHH
T ss_pred             CCCchHHHHHHHHHHHHHHhhcCch----hhHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHHHHHhCHHHH--HHHHH
Confidence            4456778899999999998653211    02234455554432 11255688889999988875422222344  36888


Q ss_pred             HHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhh--CCHHHHHHHHHHHHHhhcCC
Q 017249          240 TLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVE--GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       240 ~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~--~~~~~~~~A~~~L~~l~~~~  310 (375)
                      .|+..|.+  +.++..|+.+|.++|.....    .+..  ..++..|..++..  -+...+..+..++..+....
T Consensus       533 ~l~~~l~~--~~V~~~A~~al~~l~~~~~~----~l~p~~~~il~~l~~~l~~~~~~~~~~~~~~eai~~i~~~~  601 (963)
T 2x19_B          533 LVLHALGN--PELSVSSVSTLKKICRECKY----DLPPYAANIVAVSQDVLMKQIHKTSQCMWLMQALGFLLSAL  601 (963)
T ss_dssp             HHHHHTTC--GGGHHHHHHHHHHHHHHTGG----GCTTTHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHhCC--chHHHHHHHHHHHHHHHHHH----HHHhhHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHhcC
Confidence            89988865  78999999999999965421    2211  2345555555654  35788888888888887644

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=95.67  E-value=0.21  Score=52.12  Aligned_cols=141  Identities=7%  Similarity=-0.027  Sum_probs=85.0

Q ss_pred             CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----CCHHHHHHHHHHHHHhhccChhhHHHHHHcCC
Q 017249           37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----PNLDAIESSLLALLNLAVRNERNKVKIATAGA  111 (375)
Q Consensus        37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~  111 (375)
                      .++..+..++++++.++... .+....-.=..+++.|+.++..     +...++..++++|+..+.--......  =..+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~-~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~--L~~v  541 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTM-SEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNF--LRTV  541 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSS-CHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCC-CchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHH--HHHH
Confidence            57999999999999999876 3221211112456777887753     22344556779998877421111111  1223


Q ss_pred             hHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHh------cCChHHHHH----HhccCCHHHHHHHHHHHHHhccC
Q 017249          112 IPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAA------SGAAPLLVQ----ILHSGSVQGRVDAVTALHYLSTC  181 (375)
Q Consensus       112 i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~------~~~l~~L~~----lL~~~~~~~~~~a~~~L~~L~~~  181 (375)
                      +..|++.+...++.++..|++++.+++....  ..+..      ...++.++.    .+..-+......+..++..+...
T Consensus       542 l~~L~~~l~~~~~~v~~~A~~al~~l~~~c~--~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~~  619 (1023)
T 4hat_C          542 ILKLFEFMHETHEGVQDMACDTFIKIVQKCK--YHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIISE  619 (1023)
T ss_dssp             HHHHHHHTTCSCHHHHHHHHHHHHHHHHHHT--HHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHHHHH--HHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            4556666666678999999999999997533  22221      123343333    33334566667777777777655


Q ss_pred             C
Q 017249          182 K  182 (375)
Q Consensus       182 ~  182 (375)
                      -
T Consensus       620 ~  620 (1023)
T 4hat_C          620 E  620 (1023)
T ss_dssp             C
T ss_pred             C
Confidence            3

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.60  E-value=0.29  Score=43.45  Aligned_cols=139  Identities=16%  Similarity=0.137  Sum_probs=84.7

Q ss_pred             HHHhhCC-CCHHHHHHHHHHHHHhhccChhhHHHHHHc--CChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHH
Q 017249           73 LVLMLVS-PNLDAIESSLLALLNLAVRNERNKVKIATA--GAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIA  148 (375)
Q Consensus        73 Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~--g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~  148 (375)
                      +...+.+ ..+..+..+++++.|+.. ++..+..+...  .+++.+...+.+.+..++..++.++.|++.... .+..-.
T Consensus       152 l~~~~~~~~~p~n~ml~lR~l~NlF~-~~~g~~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~  230 (304)
T 3ebb_A          152 LINLLNPKGKPANQLLALRTFCNCFV-GQAGQKLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG  230 (304)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHGGG-SHHHHHHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH
T ss_pred             HHHhcCCCCChHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH
Confidence            3344433 346679999999999998 67788877752  345556666666789999999999999885411 001001


Q ss_pred             hcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249          149 ASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE  212 (375)
Q Consensus       149 ~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  212 (375)
                      ....+..+..++.. .+.+....++.+|.+|...+.....+.+.=.+...++-+.+.+.+.++.+
T Consensus       231 ~~~ll~~l~~il~~~~d~EalyR~LvALGtL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~  295 (304)
T 3ebb_A          231 KAQCLSLISTILEVVQDLEATFRLLVALGTLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSE  295 (304)
T ss_dssp             HHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHH
T ss_pred             HHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHH
Confidence            11244455555543 47888999999999998765444444433233333333333323455554

>1lrv_A LRV, leucine-rich repeat variant; leucine-rich repeats, repetitive structure, iron sulfur proteins, nitrogen fixation; 2.60A {Azotobacter vinelandii} SCOP: a.118.1.5

Probab=95.51  E-value=0.015  Score=50.03  Aligned_cols=157  Identities=13%  Similarity=0.087  Sum_probs=105.6

Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChH
Q 017249           75 LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAP  154 (375)
Q Consensus        75 ~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~  154 (375)
                      .++.++++.++..++..|                  ....|..+++++++.+|..++..|   .              .+
T Consensus        57 ~ll~d~~~~VR~~AA~~l------------------~~~~l~~L~~D~~~~VR~~aA~~L---~--------------~~  101 (244)
T 1lrv_A           57 QYLADPFWERRAIAVRYS------------------PVEALTPLIRDSDEVVRRAVAYRL---P--------------RE  101 (244)
T ss_dssp             GGTTCSSHHHHHHHHTTS------------------CGGGGGGGTTCSSHHHHHHHHTTS---C--------------SG
T ss_pred             HHhcCCCHHHHHHHHHhC------------------CHHHHHHHccCcCHHHHHHHHHHC---C--------------HH
Confidence            456788889888888743                  133577888899999998888642   1              14


Q ss_pred             HHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhc
Q 017249          155 LLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNS  234 (375)
Q Consensus       155 ~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~  234 (375)
                      .|..++++++..++..++..   +.              .+.+..++.++  +..++..+..   ++.            
T Consensus       102 ~L~~ll~D~d~~VR~~aA~~---l~--------------~~~L~~L~~D~--d~~VR~~aA~---~l~------------  147 (244)
T 1lrv_A          102 QLSALMFDEDREVRITVADR---LP--------------LEQLEQMAADR--DYLVRAYVVQ---RIP------------  147 (244)
T ss_dssp             GGGGTTTCSCHHHHHHHHHH---SC--------------TGGGGGGTTCS--SHHHHHHHHH---HSC------------
T ss_pred             HHHHHHcCCCHHHHHHHHHh---CC--------------HHHHHHHHcCC--CHHHHHHHHH---hcC------------
Confidence            57788899999999988874   21              12244444443  4566665554   221            


Q ss_pred             cCcHHHHHHHhccCChHHHHHHHHHH-----HHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHH
Q 017249          235 DGGILTLVETVEDGSLVSTQHAVGAL-----LSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLL  303 (375)
Q Consensus       235 ~g~v~~Lv~lL~~~~~~~~~~a~~~L-----~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L  303 (375)
                         .+.+..+++++++.++..++..+     ..+..+..+..+..++..-..+.|..++.+.++.+|+.++..+
T Consensus       148 ---~~~l~~l~~D~d~~VR~~aa~~l~~~ll~~ll~D~d~~VR~aaa~~l~~~~L~~Ll~D~d~~VR~~aa~~l  218 (244)
T 1lrv_A          148 ---PGRLFRFMRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASRLRGDDLLELLHDPDWTVRLAAVEHA  218 (244)
T ss_dssp             ---GGGGGGTTTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHHCCGGGGGGGGGCSSHHHHHHHHHHS
T ss_pred             ---HHHHHHHHcCCCHHHHHHHHHcCCHHHHHHHHcCCCHHHHHHHHHhCCHHHHHHHHcCCCHHHHHHHHHcC
Confidence               12344567788888988887753     2344455567777777766677788888888888988888764

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=95.36  E-value=1.1  Score=38.03  Aligned_cols=152  Identities=15%  Similarity=0.102  Sum_probs=95.4

Q ss_pred             HHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----C-------CHHHHHHHHHHHHHhh
Q 017249           29 ELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----P-------NLDAIESSLLALLNLA   96 (375)
Q Consensus        29 ~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~-------~~~~~~~a~~~L~~L~   96 (375)
                      ..|..|++. .++.....+..|.-....++..+.+.| ..+|+..|+..|..    +       +.+.+..+++||..+.
T Consensus         4 ~yi~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F-~~~Gl~~L~~~L~~~~~~~~~~~~~~~~~~~~~~l~CLkalm   82 (233)
T 2f31_A            4 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   82 (233)
T ss_dssp             HHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCC-----CCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHhHhHhcCCcHHHHHH-HHhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHh
Confidence            345555543 232223334444444455546788888 57888888888742    1       3566888999999988


Q ss_pred             ccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHHH----------hcCChHHHHHHhcc
Q 017249           97 VRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAIA----------ASGAAPLLVQILHS  162 (375)
Q Consensus        97 ~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i~----------~~~~l~~L~~lL~~  162 (375)
                      . +......+.. .+++..|...|.++++.++..++..|..++..++  + ...+.          +..-...+++.++.
T Consensus        83 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~~  161 (233)
T 2f31_A           83 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKS  161 (233)
T ss_dssp             S-SHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHTSCTTHHHHHTTST
T ss_pred             C-ChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCCcchHHHHHHHHhc
Confidence            7 5666666666 6789999999999999999999999999887654  4 33221          12234455665553


Q ss_pred             C-CHHHHHHHHHHHHHhccCC
Q 017249          163 G-SVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       163 ~-~~~~~~~a~~~L~~L~~~~  182 (375)
                      . +.+.+..++..+-.+...+
T Consensus       162 ~~~~e~~~~~m~lIN~li~~~  182 (233)
T 2f31_A          162 GTSIALKVGCLQLINALITPA  182 (233)
T ss_dssp             TSCHHHHHHHHHHHHHHHTTC
T ss_pred             CChHHHHHHHHHHHHHHHCCC
Confidence            3 3444444444444444443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=95.31  E-value=3.4  Score=43.27  Aligned_cols=101  Identities=14%  Similarity=0.081  Sum_probs=59.4

Q ss_pred             CChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh-----hCCHHHHHHHHHHHHHhhcCCh-hhhhhhhhHH
Q 017249          248 GSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV-----EGTFEAQERARTLLDLLRDTPQ-EKRLSSSVLE  321 (375)
Q Consensus       248 ~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~-----~~~~~~~~~A~~~L~~l~~~~~-~~~~~~g~~~  321 (375)
                      .+-..++.++++++.++.......... .-..+++.|..+..     +..+.++..+++++..+++.-. ....-..+++
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~-~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l~~vl~  543 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKR-FVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFLRTVIL  543 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHH-HHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHH-HHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence            345678899999999987653221111 11223344444322     2345556567788887664321 1222334666


Q ss_pred             HHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          322 KIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       322 ~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      .++..|.   +..++.+..|..++..|.+..
T Consensus       544 ~ll~~l~---~~~~~V~~~A~~al~~l~~~~  571 (1049)
T 3m1i_C          544 KLFEFMH---ETHEGVQDMACDTFIKIVQKC  571 (1049)
T ss_dssp             HHHHHTT---SSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHhc---CCCHHHHHHHHHHHHHHHHHH
Confidence            6665553   445999999999999998753

>3ebb_A Phospholipase A2-activating protein; armadillo repeat, structural genomics consortium, SGC, WD repeat, acetylation, ATP-binding; 1.90A {Homo sapiens}

Probab=95.03  E-value=0.17  Score=44.84  Aligned_cols=181  Identities=11%  Similarity=0.033  Sum_probs=104.3

Q ss_pred             hHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHH----HHhhcC-CChHHHHHHHHHHHHhhccCCCh
Q 017249           70 VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPL----VELLKF-QNGTLRELAAAAILTLSAAAPNK  144 (375)
Q Consensus        70 v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~L----v~lL~~-~~~~~~~~a~~~L~~Ls~~~~~~  144 (375)
                      +..+.+++ +...+.+--++..++-+.. ++.....+.+...-..+    ...+.+ ..+..+-.++++++|+..++..+
T Consensus       105 l~~l~kil-~WP~~~~fPvLDLlRl~~l-~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~p~n~ml~lR~l~NlF~~~~g~  182 (304)
T 3ebb_A          105 LQILWKAI-NCPEDIVFPALDILRLSIK-HPSVNENFCNEKEGAQFSSHLINLLNPKGKPANQLLALRTFCNCFVGQAGQ  182 (304)
T ss_dssp             HHHHHHHH-TSCTTTCHHHHHHHHHHTT-SHHHHHHHHSTTTHHHHHHHHHHTTCTTSCHHHHHHHHHHHHHGGGSHHHH
T ss_pred             HHHHHHHH-cCCHHhHHHHHHHHHHHHc-CccHHHHhhccccchHHHHHHHHhcCCCCChHHHHHHHHHHHHccCCchhH
Confidence            45666666 3444556677777776665 45555555543322333    333332 35667889999999999887777


Q ss_pred             hHHHh--cCChHHHHHHhccCCHHHHHHHHHHHHHhccCC---CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHH
Q 017249          145 PAIAA--SGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK---ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLE  219 (375)
Q Consensus       145 ~~i~~--~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~---~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~  219 (375)
                      ..+..  ..+++.+...+.+.+..++..++.++.|++...   .....  ...+...+..++.... +.+..-.++-+|+
T Consensus       183 ~~l~~~~~~il~~~~~~~~~~nknl~iA~ATl~~NlAv~~~~~~~~~~--~~~ll~~l~~il~~~~-d~EalyR~LvALG  259 (304)
T 3ebb_A          183 KLMMSQRESLMSHAIELKSGSNKNIHIALATLALNYSVCFHKDHNIEG--KAQCLSLISTILEVVQ-DLEATFRLLVALG  259 (304)
T ss_dssp             HHHHHTHHHHHHHHHGGGSSCCHHHHHHHHHHHHHHHHHHHHSCCHHH--HHHHHHHHHHHHTTCC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcCCChhHHHHHHHHHHHHHHHHhhcCCchH--HHHHHHHHHHHHhccC-CHHHHHHHHHHHH
Confidence            66653  234555555556678889999999999998531   11111  1113444445555433 4445555788888


Q ss_pred             HhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHH
Q 017249          220 ILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQH  255 (375)
Q Consensus       220 ~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~  255 (375)
                      +|...+.....+...-|+-..+-.+.+. ..+++.+.
T Consensus       260 tL~~~~~~~~~lak~l~~~~~v~~~~~~~~~~kv~~~  296 (304)
T 3ebb_A          260 TLISDDSNAVQLAKSLGVDSQIKKYSSVSEPAKVSEC  296 (304)
T ss_dssp             HHHTTCHHHHHHHHHTTHHHHGGGGGGCCSSHHHHHH
T ss_pred             HHHhCChhHHHHHHHcCHHHHHHHHHhCCCchhHHHH
Confidence            8887655555555333333333334433 23444433

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=94.75  E-value=1.9  Score=39.47  Aligned_cols=154  Identities=15%  Similarity=0.080  Sum_probs=102.0

Q ss_pred             HHHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-----------CCCHHHHHHHHHHHHH
Q 017249           27 IEELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-----------SPNLDAIESSLLALLN   94 (375)
Q Consensus        27 l~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-----------~~~~~~~~~a~~~L~~   94 (375)
                      ....|..|.++. .+.....+..|.--....+....+.|+ .+|+..|++.|.           ..+...+..+++||..
T Consensus        68 P~~yi~~L~~~~~~~kl~~~L~sL~v~Lrt~~~sWV~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLka  146 (383)
T 3eg5_B           68 AMMYIQELRSGLRDMHLLSCLESLRVSLTSHPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKA  146 (383)
T ss_dssp             HHHHHHHHTTTCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccchhHHHHHHHHHHHHhhCccHHHHHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHH
Confidence            455677776543 222234555555555555467888887 778899988884           1245778889999999


Q ss_pred             hhccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHH----------HhcCChHHHHHHh
Q 017249           95 LAVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAI----------AASGAAPLLVQIL  160 (375)
Q Consensus        95 L~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~~l~~L~~lL  160 (375)
                      +.. +......+.. ...+..|...|.+.++.++..++..|..++..++  + ...+          .+..-+..++..|
T Consensus       147 lmN-~~~G~~~vl~~~~~i~~l~~~L~s~~~~~~~~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L  225 (383)
T 3eg5_B          147 FMN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGL  225 (383)
T ss_dssp             HTS-SHHHHHHHHTCSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTT
T ss_pred             Hhc-chhhHHHHHcChHHHHHHHHHhCCCchHHHHHHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            886 5666666666 6789999999999999999999999999987754  3 3222          1223456667777


Q ss_pred             ccC-CHHHHHHHHHHHHHhccCC
Q 017249          161 HSG-SVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       161 ~~~-~~~~~~~a~~~L~~L~~~~  182 (375)
                      +.. +.+.+..++..+-.+...+
T Consensus       226 ~~~~~~e~~~~~m~lIN~li~~~  248 (383)
T 3eg5_B          226 KSGTSIALKVGCLQLINALITPA  248 (383)
T ss_dssp             STTSCHHHHHHHHHHHHHHHTTC
T ss_pred             HccCcHHHHHHHHHHHHHHHcCC
Confidence            653 4455555554444444443

>1upk_A MO25 protein; transferase, armadillo; HET: MSE; 1.85A {Homo sapiens} SCOP: a.118.1.15 PDB: 1upl_A 2wtk_A* 3gni_A*

Probab=94.24  E-value=2.8  Score=37.29  Aligned_cols=197  Identities=16%  Similarity=0.125  Sum_probs=141.1

Q ss_pred             HhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC-CCchhhhh--cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC
Q 017249          148 AASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK-ENSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS  224 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~  224 (375)
                      ...+.+..|+..|..-+-+.+..+..+..++.... +.+...++  ..-...+..++... +.+.+...+..+|+....+
T Consensus        75 ~~~dll~~Li~~l~~L~fE~RKd~~~if~~llr~~~~~~~p~v~Yl~~~peil~~L~~gY-e~~diAl~~G~mLRecir~  153 (341)
T 1upk_A           75 YNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGY-ESPEIALNCGIMLRECIRH  153 (341)
T ss_dssp             HHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGG-GSTTTHHHHHHHHHHHHTS
T ss_pred             HHhCHHHHHHHhcccCCchhhccHHHHHHHHHhcccCCCCchhHHHHcCHHHHHHHHHhh-ccchhHhHHHHHHHHHHHh
Confidence            34688899999999999999999999999987653 33222222  12344444444443 3445667788999999999


Q ss_pred             hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHc---CChHHHHHHhhhCCHHHHHHHHH
Q 017249          225 EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKE---GAIPGLLRLTVEGTFEAQERART  301 (375)
Q Consensus       225 ~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~---g~v~~L~~ll~~~~~~~~~~A~~  301 (375)
                      +...+.++ ....+..+..++..++-.+...|..++..+-..+. .....++..   ......-.++.+++.-+|..+..
T Consensus       154 e~la~~iL-~~~~f~~fF~yv~~~~FdiasDAf~TfkelLt~Hk-~lvaefL~~nyd~Ff~~y~~Ll~S~NYVTkRQSlK  231 (341)
T 1upk_A          154 EPLAKIIL-WSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHK-LLSAEFLEQHYDRFFSEYEKLLHSENYVTKRQSLK  231 (341)
T ss_dssp             HHHHHHHH-HSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSH-HHHHHHHHHTHHHHHHHHHHHTTCSSHHHHHHHHH
T ss_pred             HHHHHHHh-ccHHHHHHHHHhcCCCchHHHHHHHHHHHHHhccH-HHHHHHHHHhHHHHHHHHHHHhcCCcchhHHHHHH
Confidence            99999898 57888999999999999999999999998877663 344445443   36677778999999999999999


Q ss_pred             HHHHhhcCChh-----h-hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          302 LLDLLRDTPQE-----K-RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       302 ~L~~l~~~~~~-----~-~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      +|.-+--....     + +-...-+.-++..|.   +.+.-.+-.|=-+.+.++.
T Consensus       232 LLgelLldr~N~~vM~~Yis~~~nLkl~M~LL~---d~sk~Iq~EAFhVFKvFVA  283 (341)
T 1upk_A          232 LLGELLLDRHNFTIMTKYISKPENLKLMMNLLR---DKSRNIQFEAFHVFKVFVA  283 (341)
T ss_dssp             HHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTT---CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhCchHHHHHHHHhCCHHHHHHHHHHhc---Cchhchhhhhhhheeeeee
Confidence            99988655432     1 223446666665553   4556666667666666653

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=94.24  E-value=0.4  Score=49.90  Aligned_cols=304  Identities=10%  Similarity=0.012  Sum_probs=158.8

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC--hhhHHHHHHcCChH
Q 017249           36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN--ERNKVKIATAGAIP  113 (375)
Q Consensus        36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~--~~~r~~i~~~g~i~  113 (375)
                      +.+++....++.+|.....--   ....++..+.++.+.++|..  ++++..|+.+|..+....  ++.+..++..=.+.
T Consensus       204 ~~~~~l~~~~L~~l~s~i~wi---~~~~i~~~~ll~~l~~~L~~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~  278 (980)
T 3ibv_A          204 AKNYGTVGLCLQVYAQWVSWI---NINLIVNEPCMNLLYSFLQI--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLN  278 (980)
T ss_dssp             TTCHHHHHHHHHHHHHHTTTS---CHHHHHCHHHHHHHHHHTTS--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhhc---CHHhhhcchHHHHHHHHcCC--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHH
Confidence            478888899999999988754   34556667788889998876  699999999999988643  33444444321122


Q ss_pred             HHHHhhc--CCChHHHHHHHHHHHHhh------ccCCC---h---hH--HHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249          114 PLVELLK--FQNGTLRELAAAAILTLS------AAAPN---K---PA--IAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus       114 ~Lv~lL~--~~~~~~~~~a~~~L~~Ls------~~~~~---~---~~--i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                      ..+..+.  ..+.+..+..+..+..+.      ...+.   .   ..  -.-.+.++.++.++.+++.++...++..+..
T Consensus       279 ~~~~~l~~~~~D~d~~~~la~L~~~~ge~l~~~~~~~~~~~~~~~~~~~~~l~~ll~~lL~~~~~~~deVs~~t~~Fw~~  358 (980)
T 3ibv_A          279 LFFSKSQEQSTDPNFDEHVAKLINAQGVELVAIKSDPSELSPELKENCSFQLYNLFPYLIRYLSDDYDETSTAVFPFLSD  358 (980)
T ss_dssp             HHHCC-----CCHHHHHHHHHHHHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHTHHHHHHHHTCSSHHHHHTTHHHHHH
T ss_pred             HHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHccCccccchhhhhhHHHHHHHHHHHHHHHhCCCchhHHHHHHHHHHH
Confidence            2222222  346666554444443221      11110   0   01  1123678888899988887776666655544


Q ss_pred             hccC----CC---CchhhhhcCCcHHHHHHhhh----cc----------cch----HHHHHHHHHHHHhhC-ChhhhHHH
Q 017249          178 LSTC----KE---NSSPILDATAVPPLINLLKD----CK----------KYS----KFAEKATALLEILSS-SEEGRIAI  231 (375)
Q Consensus       178 L~~~----~~---~~~~i~~~g~i~~Lv~ll~~----~~----------~~~----~~~~~a~~~L~~l~~-~~~~~~~~  231 (375)
                      +...    +.   .....  ...++.|+..+-.    +.          ++.    ..+.....++..++. +++..-..
T Consensus       359 ~l~~~~~~~~~~~~~~~~--~~~l~~Ll~~li~k~~yp~d~~~~~~~d~ed~~~F~e~Rk~l~~l~d~~~~l~~~~~l~~  436 (980)
T 3ibv_A          359 LLVSLRKESSSKELSASL--KEFLKSLLEAIIKKMKYDESQEWDDDPDSEEEAEFQEMRKKLKIFQDTINSIDSSLFSSY  436 (980)
T ss_dssp             HHHHHHHHTTSCCCCHHH--HHHHHHHHHHHHHTTSCCTTCCCCCCSSSSTHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             HHHHHHhccccccccHHH--HHHHHHHHHHHHHHccCCCccccccccchhHHHHHHHHHHHHHHHHHHHHhcChHHHHHH
Confidence            3321    11   11111  1233444433321    10          000    122222211112221 22211110


Q ss_pred             hhccCcHHH-HHHHhcc---CChHHHHHHHHHHHHhcccCcHHHHHHHHHcC----ChHHHHHHhh-----hCCHHHHHH
Q 017249          232 TNSDGGILT-LVETVED---GSLVSTQHAVGALLSLCQSCRDKYRQLILKEG----AIPGLLRLTV-----EGTFEAQER  298 (375)
Q Consensus       232 ~~~~g~v~~-Lv~lL~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g----~v~~L~~ll~-----~~~~~~~~~  298 (375)
                      +  ...+.. +-+.+..   .+=.-.+.++.+|..++.+.........-...    +++.|..++.     ...|.++..
T Consensus       437 ~--~~~i~~~l~~~l~~~~~~~W~~~EaaL~~l~~iaE~i~~~~~~~~~~~~~lp~l~~ll~~ll~s~i~~~~hp~V~~~  514 (980)
T 3ibv_A          437 M--YSAITSSLSTAATLSPENSWQLIEFALYETYIFGEGLRGPDAFFNEVDKSPTVLSQILALVTTSQVCRHPHPLVQLL  514 (980)
T ss_dssp             H--HHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHTTTTCCSGGGTBCSSSCCBCHHHHHHHHHHHSSTTTCCCHHHHHH
T ss_pred             H--HHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHhhccccccccCcccchhHHHHHHHHHHHhCCCCCCCCHHHHHH
Confidence            0  002221 2222321   12334788999999988765321110000012    3344444544     567999999


Q ss_pred             HHHHHHHhhcCChhhhhhhhhHHHHHHHHhh--cC-CChHHHHHHHHHHHHHHHHH
Q 017249          299 ARTLLDLLRDTPQEKRLSSSVLEKIVYDIAA--RV-DGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       299 A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~--~~-~g~~~~~~~a~~~l~~l~~~  351 (375)
                      +.+++...++.-..   ....+++++..+..  .. +..++.+..|..++++|++.
T Consensus       515 ~~~~l~rys~~~~~---~~~~l~~~L~~ll~~~gl~~~~~~V~~~a~~af~~f~~~  567 (980)
T 3ibv_A          515 YMEILVRYASFFDY---ESAAIPALIEYFVGPRGIHNTNERVRPRAWYLFYRFVKS  567 (980)
T ss_dssp             HHHHHHHTGGGGGT---CCTTHHHHHHHHTSTTTTTCCCTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc---CchhHHHHHHHHhccccccCCChhHHHHHHHHHHHHHHH
Confidence            99999887765421   22356666666543  22 23478899999999999876

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=94.07  E-value=0.48  Score=40.00  Aligned_cols=135  Identities=15%  Similarity=0.029  Sum_probs=91.3

Q ss_pred             HHHHHH-HhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhc-cChhhH
Q 017249           27 IEELSD-KLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-MLVSPNLDAIESSLLALLNLAV-RNERNK  103 (375)
Q Consensus        27 l~~Lv~-~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~-~~~~~r  103 (375)
                      +..+.. +.+++..+++..|+..|..+ . .   ..      ..++.+.. +-.+++..|++.+..++..++. ..++. 
T Consensus        72 ~~~la~~L~~~~~deVR~~Av~lLg~~-~-~---~~------~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe~-  139 (240)
T 3l9t_A           72 IKKLAFLAYQSDVYQVRMYAVFLFGYL-S-K---DK------EILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYKK-  139 (240)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHT-T-T---SH------HHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTTT-
T ss_pred             HHHHHHHHHhCcchHHHHHHHHHHHhc-c-C---cH------HHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHHH-
Confidence            334444 44566678898999988777 2 2   11      12555555 4456789999999999999885 33331 


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCK  182 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~  182 (375)
                             .++.+.....++++.+|..|+..+.-.+.....  ...-.-.++.|-.+..+++..++.+..+.|..++..+
T Consensus       140 -------~l~~~~~W~~d~n~~VRR~Ase~~rpW~~~~~~--k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~  209 (240)
T 3l9t_A          140 -------ALPIIDEWLKSSNLHTRRAATEGLRIWTNRPYF--KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF  209 (240)
T ss_dssp             -------THHHHHHHHHCSSHHHHHHHHHHTCSGGGSTTT--TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC
T ss_pred             -------HHHHHHHHhcCCCHHHHHHHHHhhHHHhccchh--hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC
Confidence                   567888889999999999888877543322111  0011124566666677788899999999999999764

>4hat_C Exportin-1; heat repeat, nuclear export, RAN-ranbp1, LMB, leptomycin B, protein transport-antibiotic complex; HET: GNP LMB; 1.78A {Saccharomyces cerevisiae} PDB: 4hau_C* 4hav_C* 4hb2_C* 4hax_C* 4haw_C* 4hay_C* 4hb3_C* 4haz_C* 4hb4_C* 3m1i_C* 4hb0_C* 4gmx_C* 4gpt_C* 3vyc_A 2l1l_B

Probab=93.97  E-value=0.32  Score=50.85  Aligned_cols=143  Identities=12%  Similarity=0.066  Sum_probs=86.4

Q ss_pred             CCHHHHHHHHHHHHHhccCCCC-chhhhhcCCcHHHHHHhhhcc---cchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249          163 GSVQGRVDAVTALHYLSTCKEN-SSPILDATAVPPLINLLKDCK---KYSKFAEKATALLEILSSSEEGRIAITNSDGGI  238 (375)
Q Consensus       163 ~~~~~~~~a~~~L~~L~~~~~~-~~~i~~~g~i~~Lv~ll~~~~---~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  238 (375)
                      .+-..++.+++++..++.+... ...-.-..+++.|+.++....   +...++..++++++..+..-......+  ...+
T Consensus       465 ~~W~~~EA~~~a~gaIa~~~~~~~e~~~l~~vi~~Ll~l~~~~~~~d~k~~v~~t~~~~lGry~~wl~~~~~~L--~~vl  542 (1023)
T 4hat_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLCVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1023)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHTCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHHHHhhhccccCcchHHHHHHHHHHHHHHHHHHhccHHHH--HHHH
Confidence            3567899999999999876422 121112347778888776421   122344456677765554322222223  2355


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH------cCChHHH----HHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK------EGAIPGL----LRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~------~g~v~~L----~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      ..|+..+.+.++.++..|++++.++|...    +..+..      ...++.+    ......-++..+..+..++..+..
T Consensus       543 ~~L~~~l~~~~~~v~~~A~~al~~l~~~c----~~~l~~~~~~e~~p~~~~il~~l~~~~~~l~~~~~~~lyeai~~vi~  618 (1023)
T 4hat_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1023)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHHHHHH----HHHhhccCCCCCchhHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            56666676677889999999999999754    333432      1133333    334444567777777788888877


Q ss_pred             CCh
Q 017249          309 TPQ  311 (375)
Q Consensus       309 ~~~  311 (375)
                      ..+
T Consensus       619 ~~~  621 (1023)
T 4hat_C          619 EER  621 (1023)
T ss_dssp             TCC
T ss_pred             hCC
Confidence            664

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=93.65  E-value=1.1  Score=39.36  Aligned_cols=146  Identities=10%  Similarity=0.070  Sum_probs=100.2

Q ss_pred             HHHHHHHhcCC------CHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           27 IEELSDKLING------DLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        27 l~~Lv~~L~s~------~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      +.....+++++      +.+.-..|+..|..++.+-  ..-..+.+.  ..+..|+ +....++.+++.|.++|+.....
T Consensus        24 F~~~r~ll~sg~~~~~~D~~~le~aLD~L~ElSHDi--~~G~KI~~~ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRN  100 (315)
T 3qml_C           24 FKEMRNIIDSNPTLSSQDIARLEDSFDRIMEFAHDY--KHGYKIITHEFALLANLS-LNENLPLTLRELSTRVITSCLRN  100 (315)
T ss_dssp             HHHHHHHHHHCSSCCHHHHHHHHHHHHHHGGGTTSH--HHHHHHHHHHHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCCCCcccHHHHHHHHHHHHHhhhhH--HhhhHHHhCcHHHHHHHH-hhccCChhHHHHHHHHHHHHHcc
Confidence            44455556655      4556678999999999887  565556553  4455555 44556788999999999999999


Q ss_pred             ChhhHHHHHH--cCChHHHHHhhcC-------CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC--CHHH
Q 017249           99 NERNKVKIAT--AGAIPPLVELLKF-------QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG--SVQG  167 (375)
Q Consensus        99 ~~~~r~~i~~--~g~i~~Lv~lL~~-------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~--~~~~  167 (375)
                      +|+.-..+.+  ...+..++.-|..       ....++..-+.+|..|..++..   + ...++..|.+++..+  +..+
T Consensus       101 NP~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~~L~~~~~~---F-~~~~m~~L~~ly~~~~~d~~~  176 (315)
T 3qml_C          101 NPPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILNELPVTSED---L-PIYSTVVLQNVYERNNKDKQL  176 (315)
T ss_dssp             CHHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHSCCCSTT---C---CCHHHHHHHHHHTTTCHHH
T ss_pred             CHHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHhcChHh---h-hhccHHHHHHHHccCCCCHHH
Confidence            9998887776  3445555444422       2445677778888888877521   1 245678888888777  7888


Q ss_pred             HHHHHHHHHHhc
Q 017249          168 RVDAVTALHYLS  179 (375)
Q Consensus       168 ~~~a~~~L~~L~  179 (375)
                      +..++..+..+-
T Consensus       177 k~Kvl~li~d~f  188 (315)
T 3qml_C          177 QIKVLELISKIL  188 (315)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc
Confidence            888887776553

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=93.57  E-value=4.3  Score=37.15  Aligned_cols=174  Identities=14%  Similarity=0.110  Sum_probs=108.7

Q ss_pred             HHHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-----------CCHHHHHHHHHHHHHh
Q 017249           28 EELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-----------PNLDAIESSLLALLNL   95 (375)
Q Consensus        28 ~~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-----------~~~~~~~~a~~~L~~L   95 (375)
                      ...|..|.+.. .+.....+..|.-....++..+...|. .+|+..|+..|..           .+...+..+++||..+
T Consensus         7 ~~yv~~L~~~~~~~~~~~~L~~L~v~Lrt~~~~Wv~~F~-~~Gl~~Ll~~L~~~~~~~~~~~~~~d~~~~~~~l~CLkal   85 (386)
T 2bnx_A            7 MMYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAF   85 (386)
T ss_dssp             HHHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHHH-HHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhHHHhcCCcHHHHHHH-HhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            34556665432 222123344444444555467888885 6778888887731           1456788899999998


Q ss_pred             hccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--C-hhHH----------HhcCChHHHHHHhc
Q 017249           96 AVRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--N-KPAI----------AASGAAPLLVQILH  161 (375)
Q Consensus        96 ~~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~-~~~i----------~~~~~l~~L~~lL~  161 (375)
                      .. +......+.. .+++..|...|.+.++.++..++..|..+|..++  + ...+          .+..-...+++.+.
T Consensus        86 mN-~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~e~~RF~~lv~~l~  164 (386)
T 2bnx_A           86 MN-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLK  164 (386)
T ss_dssp             TS-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTS
T ss_pred             hC-CHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhCchhhHHHHHHHHH
Confidence            87 5556666665 6789999999999999999999999998887754  4 3222          12334566777776


Q ss_pred             cC-CHHHHHHHHHHHHHhccCCCCch-------hhhhcCCcHHHHHHhhhc
Q 017249          162 SG-SVQGRVDAVTALHYLSTCKENSS-------PILDATAVPPLINLLKDC  204 (375)
Q Consensus       162 ~~-~~~~~~~a~~~L~~L~~~~~~~~-------~i~~~g~i~~Lv~ll~~~  204 (375)
                      .. +.+.+..++..+-.+...+++..       .+.. -|+..++.-++..
T Consensus       165 ~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~-~GL~~il~~Lr~~  214 (386)
T 2bnx_A          165 SGTSIALKVGCLQLINALITPAEELDFRVHIRSELMR-LGLHQVLQELREI  214 (386)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHH-TTHHHHHHHHTTC
T ss_pred             cCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-CChHHHHHHHhcc
Confidence            43 45556665555555655554322       2223 3455555555543

>3ibv_A Exportin-T; karyopherin, heat repeat, cytoplasm, nucleus, RNA- binding, transport, tRNA processing, tRNA-binding, RNA binding protein; 3.10A {Schizosaccharomyces pombe} PDB: 3icq_T*

Probab=93.20  E-value=9.1  Score=39.75  Aligned_cols=250  Identities=9%  Similarity=-0.086  Sum_probs=139.3

Q ss_pred             CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC---CHHHHHHHHHHHHHhhccChhh----HHHHHHc
Q 017249           37 GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP---NLDAIESSLLALLNLAVRNERN----KVKIATA  109 (375)
Q Consensus        37 ~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~---~~~~~~~a~~~L~~L~~~~~~~----r~~i~~~  109 (375)
                      .+++.|.+|-..|.++-..+           ++......+|..+   +..++.-|+.+|.+....-+..    ....+..
T Consensus        20 sd~~~r~~A~~~L~~~q~sp-----------~aw~~~~~iL~~~~~~~~~vr~fa~~~L~~~I~~l~~e~~~~~~~~lr~   88 (980)
T 3ibv_A           20 VGPIIKQQATDFIGSLRSSS-----------TGWKICHEIFSEKTKYKPSTRLICLQTLSEKVREWNNESNLLELQMIRD   88 (980)
T ss_dssp             SCHHHHHHHHHHHHHHHHST-----------THHHHHHHHTTCTTTSCHHHHHHHHHHHHHHHHHCCTTTSHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHcCh-----------hHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHhCChhhhHHHHHHHHH
Confidence            47899999998888775554           3456667777553   6889999998888765421122    2222233


Q ss_pred             CChHHHHHhhc-CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCH-HHHHHHHHHHHHhccC--C-CC
Q 017249          110 GAIPPLVELLK-FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSV-QGRVDAVTALHYLSTC--K-EN  184 (375)
Q Consensus       110 g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~-~~~~~a~~~L~~L~~~--~-~~  184 (375)
                      ..++.+...-. ...+.++...+.++..+....-.   -.+.+.++-|+.++..++. ......+.+|..|...  + ..
T Consensus        89 ~ll~~l~~~~~~~~~~~IrnKL~~~la~l~~~~~p---~~Wp~~i~~l~~~~~~~~~~~~~~~~LriL~~i~EEv~~~~~  165 (980)
T 3ibv_A           89 SVWSYIKELSFLDEPAYISNAVQHLLTLLFLQLYP---SNWNDFFASLQGVIAASSQSEFSNFYLKVLLSIGDEIADSLV  165 (980)
T ss_dssp             HHHHHHHHCCSTTSCTHHHHHHHHHHHHHHHHHTT---TTCTTHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHCCCCS
T ss_pred             HHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhCc---ccCchHHHHHHHHhcCCChhHHHHHHHHHHHHhHHHHHhccc
Confidence            33334433111 23567888888888888764210   1356778888888876554 3444555565544321  1 10


Q ss_pred             -------------chhhhhc---CCcHHHHHHhhhc--ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc
Q 017249          185 -------------SSPILDA---TAVPPLINLLKDC--KKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE  246 (375)
Q Consensus       185 -------------~~~i~~~---g~i~~Lv~ll~~~--~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~  246 (375)
                                   +..+.+.   .+++....++...  ..++.+...++.++......-+ ...++ +...++.+..+|.
T Consensus       166 ~~~~~~~~r~~~lkd~m~~~~~~~i~~~~~~iL~~~~~~~~~~l~~~~L~~l~s~i~wi~-~~~i~-~~~ll~~l~~~L~  243 (980)
T 3ibv_A          166 LKTDVQIQKDNLVKDAIRANDMSDIVSFVYEMMLAYSNAKNYGTVGLCLQVYAQWVSWIN-INLIV-NEPCMNLLYSFLQ  243 (980)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSC-HHHHH-CHHHHHHHHHHTT
T ss_pred             ccCHHHHhhhHHHHHHHHhccHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHhhcC-HHhhh-cchHHHHHHHHcC
Confidence                         1111111   1144444455431  1244566777777776665322 23344 4678888888886


Q ss_pred             cCChHHHHHHHHHHHHhcccCc-HHHHHHHHHc-CChHHHHHHhh-hCCHHHHHHHHHHHH
Q 017249          247 DGSLVSTQHAVGALLSLCQSCR-DKYRQLILKE-GAIPGLLRLTV-EGTFEAQERARTLLD  304 (375)
Q Consensus       247 ~~~~~~~~~a~~~L~~l~~~~~-~~~~~~l~~~-g~v~~L~~ll~-~~~~~~~~~A~~~L~  304 (375)
                      +  +.++..|+.+|..+..... ++.+..++.. +..+.+-.+.. ..|.+..+.-++++.
T Consensus       244 ~--~~~r~~A~ecL~ei~~k~~~~~~k~~li~~l~L~~~~~~l~~~~~D~d~~~~la~L~~  302 (980)
T 3ibv_A          244 I--EELRCAACETMTEIVNKKMKPLEKLNLLNILNLNLFFSKSQEQSTDPNFDEHVAKLIN  302 (980)
T ss_dssp             S--HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHCC-----CCHHHHHHHHHHHH
T ss_pred             C--hHHHHHHHHHHHHHHHcCCChhhHHHHHHHHhHHHHHHHHhcccccHHHHHHHHHHHH
Confidence            4  7899999999998877543 3333333332 21122222222 456666655554443

>3m1i_C Exportin-1; heat repeat, GTP-binding, nucleotide-binding, NUCL protein transport, transport, cytoplasm, GTPase activation; HET: GTP; 2.00A {Saccharomyces cerevisiae} PDB: 2l1l_B

Probab=93.08  E-value=1.7  Score=45.53  Aligned_cols=141  Identities=11%  Similarity=0.059  Sum_probs=78.3

Q ss_pred             CCHHHHHHHHHHHHHhccCCCCc-hhhhhcCCcHHHHHHhhhc---ccchHHHHHHHHHHHHhhCChhhhHHHhhccCcH
Q 017249          163 GSVQGRVDAVTALHYLSTCKENS-SPILDATAVPPLINLLKDC---KKYSKFAEKATALLEILSSSEEGRIAITNSDGGI  238 (375)
Q Consensus       163 ~~~~~~~~a~~~L~~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~---~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v  238 (375)
                      .+...++.+++++..++..-... ..-.-..+++.++.+....   .+.+.++..++++++.++..-......+  ...+
T Consensus       465 ~~W~~~eaal~algsia~~~~~~~e~~~l~~v~~~l~~l~~~~~~~~~~~~v~~~~~~~lgry~~~~~~~~~~l--~~vl  542 (1049)
T 3m1i_C          465 WSWHNINTLSWAIGSISGTMSEDTEKRFVVTVIKDLLDLTVKKRGKDNKAVVASDIMYVVGQYPRFLKAHWNFL--RTVI  542 (1049)
T ss_dssp             CCHHHHHHHHHHHHHTTTSSCHHHHHHHHHHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHCHHHHHHCHHHH--HHHH
T ss_pred             CCHHHHHHHHHHHHHHhcccCchhhHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHhHHHHH--HHHH
Confidence            45678899999999887542111 1110112333444432211   1123333346677776664322222333  2467


Q ss_pred             HHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHH----------HcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          239 LTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLIL----------KEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       239 ~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~----------~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      +.++..+.+.++.++..|+.++.++|...    +..+.          -..++..|..++..-+.........++..+..
T Consensus       543 ~~ll~~l~~~~~~V~~~A~~al~~l~~~~----~~~l~~~~~~~~~p~~~~il~~l~~~~~~~~~~~~~~~~eai~~ii~  618 (1049)
T 3m1i_C          543 LKLFEFMHETHEGVQDMACDTFIKIVQKC----KYHFVIQQPRESEPFIQTIIRDIQKTTADLQPQQVHTFYKACGIIIS  618 (1049)
T ss_dssp             HHHHHHTTSSCHHHHHHHHHHHHHHHHHH----THHHHSCCTTCSSCHHHHHHHTHHHHHTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhcCCCHHHHHHHHHHHHHHHHHH----HHHhhcccCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            77888888888999999999999999754    22332          02233444445555455555555566666644


Q ss_pred             C
Q 017249          309 T  309 (375)
Q Consensus       309 ~  309 (375)
                      .
T Consensus       619 ~  619 (1049)
T 3m1i_C          619 E  619 (1049)
T ss_dssp             T
T ss_pred             c
Confidence            3

>2f31_A Diaphanous protein homolog 1; formin,MDIA1, protein-protein complex, armadillo repeats, structural protein; 2.10A {Mus musculus}

Probab=93.06  E-value=1.3  Score=37.50  Aligned_cols=119  Identities=13%  Similarity=0.155  Sum_probs=81.9

Q ss_pred             HHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH-HHHH----------HH
Q 017249          209 KFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLI----------LK  277 (375)
Q Consensus       209 ~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l----------~~  277 (375)
                      .....++.+|..+..+..+...++.+.+.+..|...|.++++.++..++..|..+|....+++ ...+          -+
T Consensus        69 ~~~~~~l~CLkalmn~~~G~~~vl~~~~~i~~l~~~L~s~~~~~r~~~leLL~~lc~~~~~~G~~~~VL~Al~~~~~~~e  148 (233)
T 2f31_A           69 RNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMDE  148 (233)
T ss_dssp             HHHHHHHHHHHHHTSSHHHHHHHHTSSSHHHHHHTTCCTTSHHHHHHHHHHHHHHHTCSSSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhCChHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHhCCCCCChHHHHHHHHHHHHHhCC
Confidence            456778999999999999999999888899999999999999999999999988887643111 1111          12


Q ss_pred             cCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---------hhhhhhhHHHHHHHHh
Q 017249          278 EGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---------KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       278 ~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g~~~~l~~~l~  328 (375)
                      ..-...++..+. +.+.+.+-.+...+..+...++.         +....|..+ ++..|.
T Consensus       149 ~~RF~~lv~~l~~~~~~e~~~~~m~lIN~li~~~~dl~~R~~lR~ef~~~Gl~~-il~~l~  208 (233)
T 2f31_A          149 VERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELR  208 (233)
T ss_dssp             SCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHTTHHH-HHHHHH
T ss_pred             cchHHHHHHHHhcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHh
Confidence            235566777665 34556666666666666666532         344455444 445555

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=92.52  E-value=2.1  Score=38.30  Aligned_cols=156  Identities=10%  Similarity=0.062  Sum_probs=107.8

Q ss_pred             HHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHH
Q 017249          134 ILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAE  212 (375)
Q Consensus       134 L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~  212 (375)
                      |.+|..++. .-.-++...++..+...++-++.++.+..+..|...+....-+..=. ...+|.++..+.... ++++.-
T Consensus       266 LL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN~~l~RaG~KLLLQVSDaksL~~t~L-~e~LPFi~~~i~~h~-eDdvvY  343 (619)
T 3c2g_A          266 LLGLLLHDSDAIDGFVRSDGVGAITTVVQYPNNDLIRAGCKLLLQVSDAKALAKTPL-ENILPFLLRLIEIHP-DDEVIY  343 (619)
T ss_dssp             HHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHTTCGGGGTSCC-TTHHHHHHHHHHHCC-CHHHHH
T ss_pred             HHHHHhcccccccceeecccceeEEEEeecCCcHHHHhhhheeeeecchHHHhhccc-cccchHHHHHhccCC-CcceEE
Confidence            455555554 45667888999999999999999999999999988876543322211 357888888887654 446777


Q ss_pred             HHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-------CChHHHHHHHHHHHHhccc------------------C
Q 017249          213 KATALLEILSSSEEGRIAITNSDGGILTLVETVED-------GSLVSTQHAVGALLSLCQS------------------C  267 (375)
Q Consensus       213 ~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-------~~~~~~~~a~~~L~~l~~~------------------~  267 (375)
                      ...+.|+|...+....+.+....|++..|-..+..       .+..-+..||++++|....                  .
T Consensus       344 SGTGFLSNVVAHKq~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~NGqr~~~  423 (619)
T 3c2g_A          344 SGTGFLSNVVAHKQHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPNGETKTA  423 (619)
T ss_dssp             HHHHHHHHHSTTCHHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTTSCCCCC
T ss_pred             ecchHHHHHHhcccchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCCCccccC
Confidence            88999999999887777776678999988877642       2344566788877764320                  0


Q ss_pred             cH---HHHHHHHHcCChHHHHHHhhhC
Q 017249          268 RD---KYRQLILKEGAIPGLLRLTVEG  291 (375)
Q Consensus       268 ~~---~~~~~l~~~g~v~~L~~ll~~~  291 (375)
                      ++   +..-.+++..++..|++.+...
T Consensus       424 G~~EqQQVckFIE~d~LKrLMtCLS~e  450 (619)
T 3c2g_A          424 GPNEKQQVCKFIEIDILKKLMSCLSCE  450 (619)
T ss_dssp             CHHHHHHHHGGGSHHHHHHHHHHHHCC
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            01   1222345567888888877643

>3eg5_B Protein diaphanous homolog 1; protein-protein complex, RHO proteins, formins, armadillo repeat, G-protein, GTPase, alternative splicing; HET: GNP; 2.70A {Mus musculus} SCOP: a.118.1.23 PDB: 1z2c_B*

Probab=92.19  E-value=6.8  Score=35.79  Aligned_cols=122  Identities=16%  Similarity=0.095  Sum_probs=85.7

Q ss_pred             HHHhhHhHHHHHHHHhc-----------CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCCHHHHH
Q 017249           19 WNQRKQALIEELSDKLI-----------NGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPNLDAIE   86 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~-----------s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~~~~~~   86 (375)
                      ..|. .+++..|+..|.           ..+...+..++++|..+....  ...+.+... ..+..|+..|.+..+.++.
T Consensus       104 ~~F~-~~Gl~~Ll~iL~~~~~~~~~~~~~~d~~~q~~~l~CLkalmN~~--~G~~~vl~~~~~i~~l~~~L~s~~~~~~~  180 (383)
T 3eg5_B          104 QTFG-AEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK--FGIKTMLETEEGILLLVRAMDPAVPNMMI  180 (383)
T ss_dssp             HHHH-HHHHHHHHHHHHHHHTCC-------CHHHHHHHHHHHHHHTSSH--HHHHHHHTCSSHHHHHHHTCCTTSHHHHH
T ss_pred             HHHH-HccHHHHHHHHHHHhhccccccchhhHHHHHHHHHHHHHHhcch--hhHHHHHcChHHHHHHHHHhCCCchHHHH
Confidence            3444 567777777774           124567788999999988665  555656554 7899999999999999999


Q ss_pred             HHHHHHHHhhccCh-hh-HHHH----------HHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCC
Q 017249           87 SSLLALLNLAVRNE-RN-KVKI----------ATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        87 ~a~~~L~~L~~~~~-~~-r~~i----------~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      .++..|..+|.-+. .+ ...+          .+..-+..++..|++. +.+.+..+...+-.+....+.
T Consensus       181 ~aleLL~~lc~~~~~~gG~~~VL~Al~~~~~~~e~~RF~~lv~~L~~~~~~e~~~~~m~lIN~li~~~~d  250 (383)
T 3eg5_B          181 DAAKLLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  250 (383)
T ss_dssp             HHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHTTSTTSCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHhCcCcCCcHHHHHHHHHHHHHhCCCCcHHHHHHHHHccCcHHHHHHHHHHHHHHHcCCCC
Confidence            99999998886442 22 2222          2345578889988874 677777666666666665543

>3a6p_A Exportin-5; exportin-5, RANGTP, nuclearexport, importin-BE family, nucleus, phosphoprotein, protein transport; HET: GTP; 2.92A {Homo sapiens}

Probab=92.16  E-value=8  Score=41.17  Aligned_cols=222  Identities=11%  Similarity=0.006  Sum_probs=122.6

Q ss_pred             HHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhh--CCCCHHHHHHHHHHHHHhhcc----
Q 017249           27 IEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLML--VSPNLDAIESSLLALLNLAVR----   98 (375)
Q Consensus        27 l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L--~~~~~~~~~~a~~~L~~L~~~----   98 (375)
                      +..++..+.++  +.+.+..|-..|.++-..+           .+...+...|  .+.+..++..|+..|.+....    
T Consensus        13 l~~~l~~~~~p~~~~~~r~~Ae~~L~~~~~~p-----------~~~~~~~~~L~~~s~~~~vR~~A~~~Lk~~I~~~W~~   81 (1204)
T 3a6p_A           13 LVKAVTVMMDPNSTQRYRLEALKFCEEFKEKC-----------PICVPCGLRLAEKTQVAIVRHFGLQILEHVVKFRWNG   81 (1204)
T ss_dssp             HHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHC-----------TTHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHHSGGG
T ss_pred             HHHHHHHHhCCCCChHHHHHHHHHHHHHHhCc-----------hHHHHHHHHHHccCCCHHHHHHHHHHHHHHHHHhccc
Confidence            44445444443  7778888888887775444           2334444433  355789999999999987643    


Q ss_pred             -ChhhHHHHHHcCChHHHHHhhcC---CChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHH
Q 017249           99 -NERNKVKIATAGAIPPLVELLKF---QNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTA  174 (375)
Q Consensus        99 -~~~~r~~i~~~g~i~~Lv~lL~~---~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~  174 (375)
                       +++.|..+.+ ..++.+......   .++.++...+.++..++..+-..   .....++.|+.++.+ +......++.+
T Consensus        82 l~~e~k~~Ir~-~ll~~l~~~~~~~~~~~~~vr~kla~~la~Ia~~d~p~---~Wp~ll~~L~~~~~~-~~~~~e~~L~i  156 (1204)
T 3a6p_A           82 MSRLEKVYLKN-SVMELIANGTLNILEEENHIKDALSRIVVEMIKREWPQ---HWPDMLIELDTLSKQ-GETQTELVMFI  156 (1204)
T ss_dssp             SCHHHHHHHHH-HHHHHHHHSSCCTTSSCHHHHHHHHHHHHHHHHHHSTT---TCTTHHHHHHHHHHT-CHHHHHHHHHH
T ss_pred             CCHHHHHHHHH-HHHHHHHhhccccccccHHHHHHHHHHHHHHHHHhCcc---cchHHHHHHHHHhcC-CHHHHHHHHHH
Confidence             2334444332 233333332111   35778888888898887653110   246788888888876 45557778888


Q ss_pred             HHHhccC---CCCc----h-----hhhhc--CCcHHHHHHhhhc-----------------ccchHHHHHHHHHHHHhhC
Q 017249          175 LHYLSTC---KENS----S-----PILDA--TAVPPLINLLKDC-----------------KKYSKFAEKATALLEILSS  223 (375)
Q Consensus       175 L~~L~~~---~~~~----~-----~i~~~--g~i~~Lv~ll~~~-----------------~~~~~~~~~a~~~L~~l~~  223 (375)
                      |..|+..   .+..    .     .+.+.  .+++.+..++...                 .....+...++.++.+...
T Consensus       157 L~~L~Eev~~~~~~~~~r~~~l~~~l~~~~~~I~~~~~~iL~~~~~~~~~~~~~~~~~~~~~~~~~l~~~aL~~l~~~l~  236 (1204)
T 3a6p_A          157 LLRLAEDVVTFQTLPPQRRRDIQQTLTQNMERIFSFLLNTLQENVNKYQQVKTDTSQESKAQANCRVGVAALNTLAGYID  236 (1204)
T ss_dssp             HHHHHHHHHTSCCSCHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCSTTHHHHHHHHHHHHHHHHHHHTTTT
T ss_pred             HHHHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccchhhhhhhHHHHHHHHHHHHHHHh
Confidence            8887642   1111    0     11111  1223333334321                 0112344445555554333


Q ss_pred             ChhhhHHHhhcc-CcHHHHHHHhccCChHHHHHHHHHHHHhcccC
Q 017249          224 SEEGRIAITNSD-GGILTLVETVEDGSLVSTQHAVGALLSLCQSC  267 (375)
Q Consensus       224 ~~~~~~~~~~~~-g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~  267 (375)
                      .-.. ..+.... ..++.+..++.  ++.++..|+.+|..++...
T Consensus       237 Wi~~-~~i~~~~~~ll~~l~~~l~--~~~lr~~A~ecL~~i~s~~  278 (1204)
T 3a6p_A          237 WVSM-SHITAENCKLLEILCLLLN--EQELQLGAAECLLIAVSRK  278 (1204)
T ss_dssp             TSCH-HHHHTTTSHHHHHHHHGGG--CTTTHHHHHHHHHHHHTCC
T ss_pred             ccCH-HHHHhccchHHHHHHHHcC--CHHHHHHHHHHHHHHHhCC
Confidence            2111 1222111 25666666665  4668899999999998754

>1lsh_A Lipovitellin (LV-1N, LV-1C); vitellogenin, lipoprotein, plasma apolipoprote apolipoprotein B, APOB; HET: PLD UPL; 1.90A {Ichthyomyzon unicuspis} SCOP: a.118.4.1 f.7.1.1 f.7.1.1

Probab=91.45  E-value=3.1  Score=43.60  Aligned_cols=171  Identities=13%  Similarity=0.072  Sum_probs=103.7

Q ss_pred             hHHHHHhhCCC----CHHHHHHHHHHHHHhhccChhhHH-HHHHcCChHHHHHh----hcCCChHHHHHHHHHHHHhhcc
Q 017249           70 VQPLVLMLVSP----NLDAIESSLLALLNLAVRNERNKV-KIATAGAIPPLVEL----LKFQNGTLRELAAAAILTLSAA  140 (375)
Q Consensus        70 v~~Lv~~L~~~----~~~~~~~a~~~L~~L~~~~~~~r~-~i~~~g~i~~Lv~l----L~~~~~~~~~~a~~~L~~Ls~~  140 (375)
                      +..+..++.++    ++.++..++.+++.|....  +.. ..+....++.+...    +...+.+-+..++.+|.|+-. 
T Consensus       393 l~~~~~l~~~~~~~~~~~l~~ta~La~gslV~k~--c~~~~~c~~~~v~~i~~~l~~~~~~~~~~~~~~~LkaLGN~g~-  469 (1056)
T 1lsh_A          393 LSYARELLNTSFIRNRPILRKTAVLGYGSLVFRY--CANTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAGQ-  469 (1056)
T ss_dssp             HHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHHHH--HTTCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-
T ss_pred             HHHHHHHHhCcccccCHHHHHHHHHHHHHHHHHH--hccCCCCCHHHHHHHHHHHHHHHhcCChHHHHHHHHHhhccCC-
Confidence            44455566542    4566777777777766420  100 00111224444444    456677777889999999844 


Q ss_pred             CCChhHHHhcCChHHHHHHhcc-------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHH
Q 017249          141 APNKPAIAASGAAPLLVQILHS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEK  213 (375)
Q Consensus       141 ~~~~~~i~~~~~l~~L~~lL~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~  213 (375)
                               ...++.|.+++..       ....++..|+++|..++...+   .    .+-+.++.++.+...+..++..
T Consensus       470 ---------p~~l~~l~~~l~~~~~~~~~~~~rvr~aAi~ALr~~~~~~p---~----~v~~il~~i~~n~~e~~EvRia  533 (1056)
T 1lsh_A          470 ---------PNSIKKIQRFLPGQGKSLDEYSTRVQAEAIMALRNIAKRDP---R----KVQEIVLPIFLNVAIKSELRIR  533 (1056)
T ss_dssp             ---------GGGHHHHHTTSTTSSSCCCCSCHHHHHHHHHTTTTGGGTCH---H----HHHHHHHHHHHCTTSCHHHHHH
T ss_pred             ---------hhHHHHHHHhhcCccccccccchHHHHHHHHHHHHhhhhch---H----HHHHHHHHHhcCCCCChHHHHH
Confidence                     4567888887742       135678889999988874311   1    1334577777766667778776


Q ss_pred             HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhcc-CChHHHHHHHHHHHHhcccCcH
Q 017249          214 ATALLEILSSSEEGRIAITNSDGGILTLVETVED-GSLVSTQHAVGALLSLCQSCRD  269 (375)
Q Consensus       214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~-~~~~~~~~a~~~L~~l~~~~~~  269 (375)
                      |..+|-.  .+|        ....+..+...+.. .+..+.......|.+++....+
T Consensus       534 A~~~Lm~--t~P--------~~~~l~~ia~~l~~E~~~QV~sfv~S~l~sla~s~~P  580 (1056)
T 1lsh_A          534 SCIVFFE--SKP--------SVALVSMVAVRLRREPNLQVASFVYSQMRSLSRSSNP  580 (1056)
T ss_dssp             HHHHHHH--TCC--------CHHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHH--HCc--------CHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHhcCCc
Confidence            6655532  222        12344555666654 6678888888888888887765

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=91.34  E-value=4.9  Score=42.08  Aligned_cols=219  Identities=11%  Similarity=0.042  Sum_probs=134.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC-CCCHHHHHHHHHHHHHhhcc----
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV-SPNLDAIESSLLALLNLAVR----   98 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~-~~~~~~~~~a~~~L~~L~~~----   98 (375)
                      -..+..++..+.+++.+.+..|-..|..+-..+           ++...+..+|. +.++.++.-|+..|.+....    
T Consensus        27 v~~Le~lv~~ly~p~~~~r~qA~~~L~q~q~sp-----------~aw~~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~   95 (1073)
T 3gjx_A           27 INLLDNVVNCLYHGEGAQQRMAQEVLTHLKEHP-----------DAWTRVDTILEFSQNMNTKYYGLQILENVIKTRWKI   95 (1073)
T ss_dssp             HHHHHHHHHTTTCSSHHHHHHHHHHHHTSSCCS-----------CHHHHHTCC---CCSHHHHHHHHHHHHHHHHHTGGG
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHcCc-----------hHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhh
Confidence            456778888888888888888888887765444           23444444553 45789999999999987753    


Q ss_pred             -ChhhHHHHHHcCChHHHHHhhcC-----CChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           99 -NERNKVKIATAGAIPPLVELLKF-----QNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        99 -~~~~r~~i~~~g~i~~Lv~lL~~-----~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                       +++.+..+ +...+..+.+...+     .++.++...+.++..++..+ +.    .....++-++..+.. ++......
T Consensus        96 L~~e~~~~L-R~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~----~Wp~fi~dLv~~~~~-~~~~~~~~  169 (1073)
T 3gjx_A           96 LPRNQCEGI-KKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPK----HWPTFISDIVGASRT-SESLCQNN  169 (1073)
T ss_dssp             SCHHHHHHH-HHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTT----TCTTHHHHHHHHHHH-CHHHHHHH
T ss_pred             CCHHHHHHH-HHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChh----hccHHHHHHHHHhCC-CHHHHHHH
Confidence             22233333 33334444444322     24566777778888877542 11    245677778877754 34455667


Q ss_pred             HHHHHHhccC-CCC-------------chhhhhcCCcHHHHHHh----hhcccchHHHHHHHHHHHHhhCChhhhHHHhh
Q 017249          172 VTALHYLSTC-KEN-------------SSPILDATAVPPLINLL----KDCKKYSKFAEKATALLEILSSSEEGRIAITN  233 (375)
Q Consensus       172 ~~~L~~L~~~-~~~-------------~~~i~~~g~i~~Lv~ll----~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~  233 (375)
                      +.+|..|+.. .+.             +..+..  -++.++.++    ... ..+.+...++.+|..+..--+ ...++ 
T Consensus       170 L~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~~--~~~~Il~ll~~iL~~~-~~~~lv~~~L~~L~~~~sWI~-i~~i~-  244 (1073)
T 3gjx_A          170 MVILKLLSEEVFDFSSGQITQVKAKHLKDSMCN--EFSQIFQLCQFVMENS-QNAPLVHATLETLLRFLNWIP-LGYIF-  244 (1073)
T ss_dssp             HHHHHHHHHHHTTSHHHHBCHHHHHHHHHHHHH--TCHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTTTSC-THHHH-
T ss_pred             HHHHHHHHHHHHhcccccccHHHHHHHHHHHHH--HHHHHHHHHHHHhccc-CCHHHHHHHHHHHHHHHHhcC-HHHhc-
Confidence            7777777632 110             111222  255555444    333 244666778888887776432 23455 


Q ss_pred             ccCcHHHH-HHHhccCChHHHHHHHHHHHHhccc
Q 017249          234 SDGGILTL-VETVEDGSLVSTQHAVGALLSLCQS  266 (375)
Q Consensus       234 ~~g~v~~L-v~lL~~~~~~~~~~a~~~L~~l~~~  266 (375)
                      +.+.++.| ..+|  .++..+..|+.+|..+...
T Consensus       245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            56788877 4666  4678999999999998764

>2bnx_A Diaphanous protein homolog 1; autoinhibition, actin, nucleation, cytoskeleton, structural; 2.4A {Mus musculus} SCOP: a.118.1.23 PDB: 3o4x_A 3obv_A* 2bap_B

Probab=91.10  E-value=3.2  Score=38.02  Aligned_cols=120  Identities=14%  Similarity=0.160  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHH-HHHH----------H
Q 017249          208 SKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKY-RQLI----------L  276 (375)
Q Consensus       208 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~-~~~l----------~  276 (375)
                      ......++.+|..+..+..+...++.+..++..|...|.+.++.++..++..|..+|....+++ ...+          .
T Consensus        72 ~~~~~~~l~CLkalmN~~~Gl~~vl~~~~~i~~l~~sL~s~~~~~r~~vleLL~alc~~~~~~G~~~~VL~Al~~~~~~~  151 (386)
T 2bnx_A           72 SRNQHEIIRCLKAFMNNKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQPEDMNERVLEAMTERAEMD  151 (386)
T ss_dssp             HHHHHHHHHHHHHHTSSHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSSTTHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHcCcHHHHHHHHHhCCCCchHHHHHHHHHHHHHcCCCCCChHHHHHHHHHHHHHhC
Confidence            3456778999999999999999999888899999999998889999999999988887653122 1111          1


Q ss_pred             HcCChHHHHHHhh-hCCHHHHHHHHHHHHHhhcCChh---------hhhhhhhHHHHHHHHh
Q 017249          277 KEGAIPGLLRLTV-EGTFEAQERARTLLDLLRDTPQE---------KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       277 ~~g~v~~L~~ll~-~~~~~~~~~A~~~L~~l~~~~~~---------~~~~~g~~~~l~~~l~  328 (375)
                      +..-...++..+. +.+.+.+..+...+..+...++.         ++...|..+ ++..|.
T Consensus       152 e~~RF~~lv~~l~~~~~~e~~~a~m~lIN~lv~~~~dl~~R~~LR~Ef~~~GL~~-il~~Lr  212 (386)
T 2bnx_A          152 EVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEELDFRVHIRSELMRLGLHQ-VLQELR  212 (386)
T ss_dssp             TSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTTHHH-HHHHHT
T ss_pred             chhhHHHHHHHHHcCChHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCChHH-HHHHHh
Confidence            2235566777666 45566666666677777666632         445566555 556665

>3u0r_A Apoptosis inhibitor 5; heat repeat, armadillo repeat, lysine acetylation; 2.50A {Homo sapiens} PDB: 3v6a_A

Probab=90.58  E-value=1.8  Score=40.52  Aligned_cols=122  Identities=19%  Similarity=0.163  Sum_probs=80.8

Q ss_pred             CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHH
Q 017249          121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINL  200 (375)
Q Consensus       121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~l  200 (375)
                      ++++..+..|+..+.....+-+.    ....++..+++++.+.+..++..|...|..+|.+ ++...+     ...|+++
T Consensus        39 kg~~k~K~LaaQ~I~kffk~FP~----l~~~Ai~a~lDLcEDed~~IR~qaik~Lp~~ck~-~~i~ki-----aDvL~Ql  108 (507)
T 3u0r_A           39 KGGTKEKRLAAQFIPKFFKHFPE----LADSAINAQLDLCEDEDVSIRRQAIKELPQFATG-ENLPRV-----ADILTQL  108 (507)
T ss_dssp             GSCHHHHHHHHHHHHHHGGGCGG----GHHHHHHHHHHHHTCSSHHHHHHHHHHGGGGCCT-TCHHHH-----HHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHhhChh----hHHHHHHHHHHHHhcccHHHHHHHHHhhHHHhhh-hhhhhH-----HHHHHHH
Confidence            44688888888888887665432    2345688999999999999999999999999987 554443     4578888


Q ss_pred             hhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249          201 LKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  262 (375)
Q Consensus       201 l~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  262 (375)
                      |.+.... . ....-.+|..+-...        ..+.+..|...+..+++.+|+.++..|..
T Consensus       109 Lqtdd~~-E-~~~V~~sL~sllk~D--------pk~tl~~lf~~i~~~~e~~Rer~lkFi~~  160 (507)
T 3u0r_A          109 LQTDDSA-E-FNLVNNALLSIFKMD--------AKGTLGGLFSQILQGEDIVRERAIKFLST  160 (507)
T ss_dssp             TTCCCHH-H-HHHHHHHHHHHHHHC--------HHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HhccchH-H-HHHHHHHHHHHHhcC--------hHHHHHHHHHHHcccchHHHHHHHHHHHH
Confidence            8865322 1 222333333332111        12445556666666678888888887753

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=89.82  E-value=0.81  Score=35.39  Aligned_cols=72  Identities=11%  Similarity=0.139  Sum_probs=59.7

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhc
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~  308 (375)
                      ++..|...|.++++.++..|+.+|-.+..+++......+.+..++..|+.++...++.|++....++..-+.
T Consensus        43 a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           43 CLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            556677778888999999999999999888876666677677788888888888899999999998876654

>3qml_C Protein SLS1, nucleotide exchange factor SIL1; armadillo like repeats, chaperone-protein transport complex; 2.31A {Saccharomyces cerevisiae}

Probab=89.27  E-value=7.9  Score=33.90  Aligned_cols=110  Identities=16%  Similarity=0.073  Sum_probs=76.8

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc--CChHHHHHhhCC-------CCHHHHHHHHHHHH
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA--GVVQPLVLMLVS-------PNLDAIESSLLALL   93 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~--g~v~~Lv~~L~~-------~~~~~~~~a~~~L~   93 (375)
                      +...+..|+ +..+.++..+..|+++|....+++ |...+.+.+.  ..+..++.-|..       ....+++.-+.+|.
T Consensus        69 ef~lL~nL~-~~~~~~~~~rE~aarII~ssLRNN-P~Al~~V~~~~p~fv~~lf~~L~~~~~~~~~~~~~l~KR~LsII~  146 (315)
T 3qml_C           69 EFALLANLS-LNENLPLTLRELSTRVITSCLRNN-PPVVEFINESFPNFKSKIMAALSNLNDSNHRSSNILIKRYLSILN  146 (315)
T ss_dssp             HHHHHHHHH-HCTTSCHHHHHHHHHHHHHHHTTC-HHHHHHHHHHCTTHHHHHHHHHHHHHCC--CCCHHHHHHHHHHHH
T ss_pred             cHHHHHHHH-hhccCChhHHHHHHHHHHHHHccC-HHHHHHHHHhChhHHHHHHHHHHHHhhcccchhHHHHHHHHHHHH
Confidence            344455555 334567788999999999999999 6666666543  566666655432       24467778888999


Q ss_pred             HhhccChhhHHHHHHcCChHHHHHhhcCC--ChHHHHHHHHHHHHhhc
Q 017249           94 NLAVRNERNKVKIATAGAIPPLVELLKFQ--NGTLRELAAAAILTLSA  139 (375)
Q Consensus        94 ~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~--~~~~~~~a~~~L~~Ls~  139 (375)
                      .|..++...     ...++..|.+++...  ++.++..++..+..+-.
T Consensus       147 ~L~~~~~~F-----~~~~m~~L~~ly~~~~~d~~~k~Kvl~li~d~f~  189 (315)
T 3qml_C          147 ELPVTSEDL-----PIYSTVVLQNVYERNNKDKQLQIKVLELISKILK  189 (315)
T ss_dssp             HSCCCSTTC-------CCHHHHHHHHHHTTTCHHHHHHHHHHHHHHHH
T ss_pred             HHhcChHhh-----hhccHHHHHHHHccCCCCHHHHHHHHHHHHHHcc
Confidence            999854323     255778888888776  88999988888877653

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=88.85  E-value=1  Score=35.82  Aligned_cols=73  Identities=8%  Similarity=0.092  Sum_probs=59.5

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRD  308 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~  308 (375)
                      .++..|...|.++++.++..|+.+|-.+..++.......+.+..++..|+.++.. .++.|++.+..++..-..
T Consensus        52 eA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           52 DCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            3556677788889999999999999999998776777777777888889888875 678999999998776654

>3c2g_A SYS-1 protein; beta-catenin, phylogeny, SYS-1, developmental protein, DNA-binding, nucleus; 2.50A {Caenorhabditis elegans} PDB: 3c2h_A*

Probab=88.48  E-value=12  Score=33.56  Aligned_cols=173  Identities=11%  Similarity=0.089  Sum_probs=114.4

Q ss_pred             HHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCC
Q 017249          171 AVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGS  249 (375)
Q Consensus       171 a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~  249 (375)
                      +...|.-|..+.+...-++..+++..+..++.-.+  ..+.++.+..|...+....-...=+  ...+|.++..+. +++
T Consensus       263 ~FDLL~LLmHdSnAIDGFVk~DGv~~I~TvinYpN--~~l~RaG~KLLLQVSDaksL~~t~L--~e~LPFi~~~i~~h~e  338 (619)
T 3c2g_A          263 TFDLLGLLLHDSDAIDGFVRSDGVGAITTVVQYPN--NDLIRAGCKLLLQVSDAKALAKTPL--ENILPFLLRLIEIHPD  338 (619)
T ss_dssp             HHHHHHHHCCSHHHHHHHHHTTHHHHHHHHTTSSC--HHHHHHHHHHHHHHTTCGGGGTSCC--TTHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhcccccccceeecccceeEEEEeecCC--cHHHHhhhheeeeecchHHHhhccc--cccchHHHHHhccCCC
Confidence            33333333344455677888899999988888763  3577778888888876665554433  367888888885 678


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-------CHHHHHHHHHHHHHhhc-------------C
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-------TFEAQERARTLLDLLRD-------------T  309 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-------~~~~~~~A~~~L~~l~~-------------~  309 (375)
                      +.+.-...+.|.|...+. .-.++..+..|+++.|.+.+...       +..-++.|+.+++++-+             +
T Consensus       339 DdvvYSGTGFLSNVVAHK-q~VKelAI~~nAI~LLh~~I~ky~~Lsdf~ea~Kkk~aC~IicN~LRalNNFLMmWIPm~N  417 (619)
T 3c2g_A          339 DEVIYSGTGFLSNVVAHK-QHVKDIAIRSNAIFLLHTIISKYPRLDELTDAPKRNRVCEIICNCLRTLNNFLMMWIPTPN  417 (619)
T ss_dssp             HHHHHHHHHHHHHHSTTC-HHHHHHHHHTTHHHHHHHHHHTSCCGGGCCSHHHHHHHHHHHHHHHHHHHHHHGGGSCCTT
T ss_pred             cceEEecchHHHHHHhcc-cchHHHHhccCcHHHHHHHHhhCCChhhhhhhhhhcchHHHHHHHHHHHhhheeEEEecCC
Confidence            889999999999999987 44566667899999998866532       23445566666655421             0


Q ss_pred             C---------hh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHH
Q 017249          310 P---------QE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       310 ~---------~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l  348 (375)
                      .         ++   +.++.+++..|+.-|....=.++-..+--..+|+-+
T Consensus       418 Gqr~~~G~~EqQQVckFIE~d~LKrLMtCLS~e~fDv~~LlELRSTILR~F  468 (619)
T 3c2g_A          418 GETKTAGPNEKQQVCKFIEIDILKKLMSCLSCEGMDTPGLLELRSTILRSF  468 (619)
T ss_dssp             SCCCCCCHHHHHHHHGGGSHHHHHHHHHHHHCCC-CCTTHHHHHHHHHHHH
T ss_pred             CccccCChHHHHHHHHHHHHHHHHHHHHHhcccccCcchHHHHHHHHHHHH
Confidence            0         11   566778888888877633323344444444555544

>3gjx_A Exportin-1; transport, cytoplasm, nucleus, RNA-binding, acetylation, GTP-binding, HOST-virus interaction, nucleotide-binding, phosphoprotein; HET: GTP; 2.50A {Mus musculus} PDB: 3nby_A* 3nbz_A* 3nc0_A* 3nc1_A* 3gb8_A

Probab=87.87  E-value=12  Score=39.21  Aligned_cols=215  Identities=10%  Similarity=0.048  Sum_probs=131.9

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhc-CCChHHHHHHHHHHHHhhccC-----C
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLK-FQNGTLRELAAAAILTLSAAA-----P  142 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~-~~~~~~~~~a~~~L~~Ls~~~-----~  142 (375)
                      .++.++..+.+++.+.+.+|-..|..+-. +++...         .+..+|. +.++.+|..|+.+|.+.....     +
T Consensus        29 ~Le~lv~~ly~p~~~~r~qA~~~L~q~q~-sp~aw~---------~~~~iL~~s~~~~vR~fAa~~L~~~I~~~W~~L~~   98 (1073)
T 3gjx_A           29 LLDNVVNCLYHGEGAQQRMAQEVLTHLKE-HPDAWT---------RVDTILEFSQNMNTKYYGLQILENVIKTRWKILPR   98 (1073)
T ss_dssp             HHHHHHHTTTCSSHHHHHHHHHHHHTSSC-CSCHHH---------HHTCC---CCSHHHHHHHHHHHHHHHHHTGGGSCH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHHc-CchHHH---------HHHHHhcCCCCHHHHHHHHHHHHHHHHhhhhhCCH
Confidence            36667777777788888888888888766 454433         3334443 348899999999999876531     1


Q ss_pred             ChhHHHhcCChHHHHHHhcc-----CCHHHHHHHHHHHHHhccC--CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHH
Q 017249          143 NKPAIAASGAAPLLVQILHS-----GSVQGRVDAVTALHYLSTC--KENSSPILDATAVPPLINLLKDCKKYSKFAEKAT  215 (375)
Q Consensus       143 ~~~~i~~~~~l~~L~~lL~~-----~~~~~~~~a~~~L~~L~~~--~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~  215 (375)
                      ..........+..+...-.+     .++.++...+.++..++..  ++..     .+.++.++..+..+   ....+..+
T Consensus        99 e~~~~LR~~Ll~~l~~~~~~~~~~e~~~~vinKLa~~La~I~k~~~P~~W-----p~fi~dLv~~~~~~---~~~~~~~L  170 (1073)
T 3gjx_A           99 NQCEGIKKYVVGLIIKTSSDPTCVEKEKVYIGKLNMILVQILKQEWPKHW-----PTFISDIVGASRTS---ESLCQNNM  170 (1073)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCGGGGTSCHHHHHHHHHHHHHHHHHHTTTTC-----TTHHHHHHHHHHHC---HHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHccCccccccchHHHHHHHHHHHHHHHHhChhhc-----cHHHHHHHHHhCCC---HHHHHHHH
Confidence            11111223334444443322     2356677778888887743  3332     23566677776543   23456677


Q ss_pred             HHHHHhhCC--h---h----h-----hHHHhhccCcHHHHHHH----hc-cCChHHHHHHHHHHHHhcccCcHHHHHHHH
Q 017249          216 ALLEILSSS--E---E----G-----RIAITNSDGGILTLVET----VE-DGSLVSTQHAVGALLSLCQSCRDKYRQLIL  276 (375)
Q Consensus       216 ~~L~~l~~~--~---~----~-----~~~~~~~~g~v~~Lv~l----L~-~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~  276 (375)
                      .+|..|+..  .   .    .     +..+. .  .++.++.+    |. ..++.+...++.+|..+...-+   ...++
T Consensus       171 ~IL~~L~EEV~d~~~~~l~~~r~~~lk~~L~-~--~~~~Il~ll~~iL~~~~~~~lv~~~L~~L~~~~sWI~---i~~i~  244 (1073)
T 3gjx_A          171 VILKLLSEEVFDFSSGQITQVKAKHLKDSMC-N--EFSQIFQLCQFVMENSQNAPLVHATLETLLRFLNWIP---LGYIF  244 (1073)
T ss_dssp             HHHHHHHHHHTTSHHHHBCHHHHHHHHHHHH-H--TCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTTSC---THHHH
T ss_pred             HHHHHHHHHHHhcccccccHHHHHHHHHHHH-H--HHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHhcC---HHHhc
Confidence            777776532  0   0    1     11222 1  14444443    43 3567778888999999888763   34577


Q ss_pred             HcCChHHHH-HHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          277 KEGAIPGLL-RLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       277 ~~g~v~~L~-~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      +.+.++.|+ .++  .++..+..|+.+|..+.+.
T Consensus       245 ~~~ll~~L~~~~L--~~~~~r~aA~dcL~eIv~k  276 (1073)
T 3gjx_A          245 ETKLISTLIYKFL--NVPMFRNVSLKCLTEIAGV  276 (1073)
T ss_dssp             SSSHHHHHHHHTS--SSHHHHHHHHHHHHHHHHS
T ss_pred             cchHHHHHHHHhc--CChHHHHHHHHHHHHHHhc
Confidence            788888774 444  5789999999999988654

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.64  E-value=1.1  Score=35.01  Aligned_cols=73  Identities=14%  Similarity=0.103  Sum_probs=60.0

Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhc
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRD  308 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~  308 (375)
                      .++..|..-|.++++.++..|+.+|-.+..+++......+.+..++..|+.++..      .++.|++.+..++..-+.
T Consensus        38 ~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  116 (148)
T 1mhq_A           38 HAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (148)
T ss_dssp             HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            3566777788899999999999999999998877777778788899999988863      478999999888776654

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=87.40  E-value=1.4  Score=34.35  Aligned_cols=72  Identities=13%  Similarity=0.140  Sum_probs=60.3

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh------hCCHHHHHHHHHHHHHhhc
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV------EGTFEAQERARTLLDLLRD  308 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~------~~~~~~~~~A~~~L~~l~~  308 (375)
                      ++..|...|.+.++.++..|+.+|-.+..+++......+.+..++..|+.++.      ..++.|++....++..-+.
T Consensus        49 a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  126 (149)
T 3g2s_A           49 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  126 (149)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHHH
Confidence            56677778888999999999999999999887777777777889999999885      3578999999998887764

>1mhq_A ADP-ribosylation factor binding protein GGA2; super helix, protein transport; 2.20A {Homo sapiens} SCOP: a.118.9.2

Probab=87.00  E-value=2.7  Score=32.72  Aligned_cols=76  Identities=14%  Similarity=0.069  Sum_probs=62.3

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLA   96 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~   96 (375)
                      ..+++..+.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.++..      .+..++...+..+...+
T Consensus        36 ~k~a~rai~krl~~~n~~vql~AL~LLe~~vkNCG~~fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  115 (148)
T 1mhq_A           36 PTHAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWT  115 (148)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHH
Confidence            456778888889999999999999999999988634556666677899999999874      47899999999988887


Q ss_pred             cc
Q 017249           97 VR   98 (375)
Q Consensus        97 ~~   98 (375)
                      ..
T Consensus       116 ~~  117 (148)
T 1mhq_A          116 VW  117 (148)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>3ldz_A STAM-1, signal transducing adapter molecule 1; ubiquitin-binding, cytoplasm, UBL conjugation, endosome, membrane, protein transport, SH3 domain; 2.60A {Homo sapiens} SCOP: a.118.9.0

Probab=86.57  E-value=1.8  Score=33.39  Aligned_cols=75  Identities=8%  Similarity=0.046  Sum_probs=58.2

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+++..+.+.|.+.++.++..|+..|-.+..+.-+.....+.+..++..|+.+++..++.++...+..+...+.
T Consensus        40 ~k~a~rai~Krl~~~n~~~ql~AL~LLe~~vkNcG~~f~~evas~~Fl~el~~l~~~~~~~Vk~kil~li~~W~~  114 (140)
T 3ldz_A           40 PKDCLRSIMRRVNHKDPHVAMQALTLLGACVSNCGKIFHLEVCSRDFASEVSNVLNKGHPKVCEKLKALMVEWTD  114 (140)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHSSHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHhccCCHHHHHHHHHHHHHHHH
Confidence            345677788888899999999999999888877623344455555778888888877788999999988887764

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=86.46  E-value=1.4  Score=35.32  Aligned_cols=73  Identities=11%  Similarity=0.131  Sum_probs=59.6

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhcC
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~~  309 (375)
                      ++..|...|.++++.++..|+.+|-.+..+++......+.+..++..|+.++..      .++.|++.+..++..-+..
T Consensus        51 A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~~  129 (171)
T 1juq_A           51 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMA  129 (171)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            556777888889999999999999999998866677777778899999998852      4689999999988766543

>1x5b_A Signal transducing adaptor molecule 2; VHS domain, ubiquitin binding, STAM2, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2l0t_B

Probab=86.40  E-value=2.5  Score=33.52  Aligned_cols=74  Identities=5%  Similarity=0.034  Sum_probs=59.2

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~   97 (375)
                      .+++..|.+.|++.++.++..|+..|-.+..+.-+.....+.+..++..|+.++.. .++.|+..++..+...+.
T Consensus        51 keA~ral~krl~~~n~~vql~AL~LLd~~vkNcG~~Fh~evas~~Fl~el~~l~~~~~~~~Vk~kil~li~~W~~  125 (163)
T 1x5b_A           51 KDCLKAIMKRVNHKVPHVALQALTLLGACVANCGKIFHLEVCSRDFATEVRAVIKNKAHPKVCEKLKSLMVEWSE  125 (163)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHTCHHHHHHHTSHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhhHHHHHHHhhHHHHHHHHHHHccCCCHHHHHHHHHHHHHHHH
Confidence            46778888888999999999999999999888634455566666788888888865 578999999988887774

>3g2s_A C-terminal fragment of sortilin-related receptor; ADP-ribosylation factor binding protein GGA1, VHS, acidic- cluster dileucine signal, sorla; 1.70A {Homo sapiens} SCOP: a.118.9.2 PDB: 3g2t_A* 3g2u_A 3g2v_A* 3g2w_A 1ujk_A* 1jwf_A 1ujj_A 1jwg_A* 1py1_A*

Probab=86.31  E-value=3.2  Score=32.35  Aligned_cols=76  Identities=13%  Similarity=0.097  Sum_probs=61.5

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLA   96 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~   96 (375)
                      ..+++..|...|++.++.++..|+..|-.+..+.-+.....+....++..|+.+++.      .+..++...+..+...+
T Consensus        46 pk~a~ral~krl~~~n~~v~l~AL~LLe~cvkNCG~~fh~eias~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~  125 (149)
T 3g2s_A           46 PPLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWT  125 (149)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhcCHHHHHHHhhHHHHHHHHHHHcccccCCCCCHHHHHHHHHHHHHHH
Confidence            345778888889999999999999999999887734455566667889999999864      57899999999998887


Q ss_pred             cc
Q 017249           97 VR   98 (375)
Q Consensus        97 ~~   98 (375)
                      ..
T Consensus       126 ~~  127 (149)
T 3g2s_A          126 VG  127 (149)
T ss_dssp             HH
T ss_pred             HH
Confidence            53

>1juq_A ADP-ribosylation factor binding protein GGA3; protein-peptide compelx, VHS domain, DXXLL sorting signal, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.9.2 PDB: 1jpl_A 1lf8_A*

Probab=84.28  E-value=3.5  Score=32.95  Aligned_cols=75  Identities=11%  Similarity=0.108  Sum_probs=60.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~   97 (375)
                      .+++..|.+.|++.++.++..|+..|-.+..+..+.....+.+..++..|+.++..      .+..|+..++..+...+.
T Consensus        49 k~A~ral~krl~~~n~~vql~AL~LLd~~vkNCG~~Fh~evas~~Fl~eL~kl~~~k~~~~~~~~~Vk~kil~li~~W~~  128 (171)
T 1juq_A           49 QIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTM  128 (171)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHhccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45677888888999999999999999999988623455566667889999999863      368999999999988875


Q ss_pred             c
Q 017249           98 R   98 (375)
Q Consensus        98 ~   98 (375)
                      .
T Consensus       129 ~  129 (171)
T 1juq_A          129 A  129 (171)
T ss_dssp             H
T ss_pred             H
Confidence            4

>3l9t_A Putative uncharacterized protein SMU.31; hypothetical protein, unknown function; HET: EPE; 2.21A {Streptococcus mutans}

Probab=83.58  E-value=18  Score=30.45  Aligned_cols=142  Identities=15%  Similarity=0.044  Sum_probs=89.9

Q ss_pred             HHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhcc--CCCCchhhh
Q 017249          113 PPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLST--CKENSSPIL  189 (375)
Q Consensus       113 ~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~--~~~~~~~i~  189 (375)
                      +....+..++..++|..|+.+|..+ .  .      ....++.+.. +-.+.+-.+++.++.++..++.  +++      
T Consensus        74 ~la~~L~~~~~deVR~~Av~lLg~~-~--~------~~~~L~~ir~~va~D~~WrVre~lA~a~~~~~~~~~pe------  138 (240)
T 3l9t_A           74 KLAFLAYQSDVYQVRMYAVFLFGYL-S--K------DKEILIFMRDEVSKDNNWRVQEVLAKAFDEFCKKIEYK------  138 (240)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHT-T--T------SHHHHHHHHHTGGGCSCHHHHHHHHHHHHHHHHHHCTT------
T ss_pred             HHHHHHHhCcchHHHHHHHHHHHhc-c--C------cHHHHHHHHHHhCCCCCccHHHHHHHHHHHHHHhcCHH------
Confidence            3445556677889999999988777 2  1      1234566666 4556678999999999998874  333      


Q ss_pred             hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcH
Q 017249          190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD  269 (375)
Q Consensus       190 ~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~  269 (375)
                        ..++.+.....++  +..++..|...+.--+..+..   .....-+++.|-.+..+++.-+|....+.|..++..+ |
T Consensus       139 --~~l~~~~~W~~d~--n~~VRR~Ase~~rpW~~~~~~---k~dp~~ll~iL~~L~~D~s~yVrKSVan~LrD~SK~~-P  210 (240)
T 3l9t_A          139 --KALPIIDEWLKSS--NLHTRRAATEGLRIWTNRPYF---KENPNEAIRRIADLKEDVSEYVRKSVGNALRDISKKF-P  210 (240)
T ss_dssp             --TTHHHHHHHHHCS--SHHHHHHHHHHTCSGGGSTTT---TTCHHHHHHHHHTTTTCSCHHHHHHHHHHHHHHHTTC-H
T ss_pred             --HHHHHHHHHhcCC--CHHHHHHHHHhhHHHhccchh---hcCHHHHHHHHHHhcCChHHHHHHHHHHHHHHHhhhC-H
Confidence              1456677777665  446777666554432222111   1101123444445556788999999999999999988 4


Q ss_pred             HHHHHHHH
Q 017249          270 KYRQLILK  277 (375)
Q Consensus       270 ~~~~~l~~  277 (375)
                      +....+++
T Consensus       211 d~V~~~~~  218 (240)
T 3l9t_A          211 DLVKIELK  218 (240)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>1vdy_A Hypothetical protein (RAFL09-17-B18); structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Arabidopsis thaliana} PDB: 2dcp_A

Probab=82.14  E-value=4  Score=31.38  Aligned_cols=74  Identities=11%  Similarity=0.116  Sum_probs=56.4

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH-cCChHHHHHHhhhCC--------HHHHHHHHHHHHHhh
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK-EGAIPGLLRLTVEGT--------FEAQERARTLLDLLR  307 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~-~g~v~~L~~ll~~~~--------~~~~~~A~~~L~~l~  307 (375)
                      +++.|..-|.+.++.++-.|+.+|..||....+..+..+.+ ...|..+..+-.-.+        ..||+.|..++..|.
T Consensus        50 im~~L~kRL~~k~~~vk~KaL~lL~yL~~~Gs~~f~~~~r~~~~~Ik~l~~F~g~~dp~~G~d~g~~VR~~AkEl~~ll~  129 (140)
T 1vdy_A           50 FSEFILKRLDNKSPIVKQKALRLIKYAVGKSGSEFRREMQRNSVAVRNLFHYKGHPDPLKGDALNKAVRETAHETISAIF  129 (140)
T ss_dssp             HHHHHHHHHTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHTTHHHHTTTTCCCCCCTTTSSCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhcCCCcceeehHHHHHHHHHHhCCHHHHHHHHHhHHHHHHHHhcCCCCCcccccchhHHHHHHHHHHHHHHh
Confidence            56678888888889999999999999998877777777766 345666655332222        679999999999987


Q ss_pred             cCC
Q 017249          308 DTP  310 (375)
Q Consensus       308 ~~~  310 (375)
                      ...
T Consensus       130 d~~  132 (140)
T 1vdy_A          130 SEE  132 (140)
T ss_dssp             CCS
T ss_pred             CcC
Confidence            655

>3o2t_A Symplekin; heat repeat, scaffold, protein binding; 1.40A {Homo sapiens} PDB: 3odr_A 3ods_A 4h3k_A* 3o2s_A 3o2q_A* 4h3h_A*

Probab=81.82  E-value=20  Score=32.66  Aligned_cols=105  Identities=15%  Similarity=0.207  Sum_probs=70.9

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc-------
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV-------   97 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~-------   97 (375)
                      ++++.++.+-.+.+.+++...+.+|...+... .+...     ..++.|..+|.++++.+.+.++.+..++-.       
T Consensus        63 ~fl~~il~f~~d~~~~vRk~~a~FieEa~~~~-~el~~-----~~l~~L~~LL~d~d~~V~K~~I~~~tslYpl~f~~i~  136 (386)
T 3o2t_A           63 NFLDEIIAFQADKSIEVRKFVIGFIEEACKRD-IELLL-----KLIANLNMLLRDENVNVVKKAILTMTQLYKVALQWMV  136 (386)
T ss_dssp             GGHHHHHGGGGCSCHHHHHHHHHHHHHHHHHC-GGGHH-----HHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhccCCcHHHHHHHHHHHHHHHHHH-HHHHH-----HHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            67888888888889999999999999998876 44433     247788888998899998888877766541       


Q ss_pred             -cC------hhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHh
Q 017249           98 -RN------ERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTL  137 (375)
Q Consensus        98 -~~------~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~L  137 (375)
                       ..      ...+..+..  .-..++.++.+.+..++..++..+-.+
T Consensus       137 ~~~~~~~~~e~~W~~m~~--lK~~Il~~~ds~n~GVrl~aiKFle~V  181 (386)
T 3o2t_A          137 KSRVISELQEACWDMVSA--MAGDIILLLDSDNDGIRTHAIKFVEGL  181 (386)
T ss_dssp             HC-CCCHHHHHHHHHHHH--HHHHHHHGGGCSSHHHHHHHHHHHHHH
T ss_pred             cCCCcchhHHHHHHHHHH--HHHHHHHHhccCCcchHHHHHHHHHHH
Confidence             10      122222222  122445555666777776666665553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	375
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	3e-15
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	2e-12
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	4e-10
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	5e-08
d1xm9a1	457	a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo	1e-04
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	8e-15
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	2e-14
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	4e-12
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	1e-11
d1jdha_	529	a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens)	3e-07
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	2e-13
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-04
d1wa5b_	503	a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (S	3e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	1e-12
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-08
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	2e-07
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	4e-06
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	3e-04
d1q1sc_	434	a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus	0.001
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	5e-08
d1xqra1	264	a.118.1.21 (A:87-350) Hsp70-binding protein 1 (Hsp	1e-07
d2vglb_	579	a.118.1.10 (B:) Adaptin beta subunit N-terminal fr	3e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	4e-04
d1u6gc_	1207	a.118.1.2 (C:) Cullin-associated NEDD8-dissociated	0.002
d2j8wa1	128	a.24.3.2 (A:1-128) Cytochrome c' {Rhodocyclus gela	6e-04
d1cpqa_	129	a.24.3.2 (A:) Cytochrome c' {Rhodobacter capsulatu	0.004
d1bbha_	131	a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [T	0.004

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-15
 Identities = 45/232 (19%), Positives = 77/232 (33%), Gaps = 15/232 (6%)

Query: 70  VQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLREL 129
           +   V  L S +          + +   ++E  K ++   G I  LV+LL+  N  +++ 
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQA 63

Query: 130 AAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI 188
           AA A+  L   +  NK            V +L           +T L +  +  +     
Sbjct: 64  AAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEE 123

Query: 189 LDATAVPPLINLLKDCK--------------KYSKFAEKATALLEILSSSEEGRIAITNS 234
           L A A+P L + +                     +    AT  L  LSS++ GR  + N 
Sbjct: 124 LIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFNATGCLRNLSSADAGRQTMRNY 183

Query: 235 DGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLR 286
            G I +L+  V++    S          +C      YR           L  
Sbjct: 184 SGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEY 235

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 66.0 bits (159), Expect = 2e-12
 Identities = 29/154 (18%), Positives = 60/154 (38%), Gaps = 2/154 (1%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIE 86
           I +    L + D + +   A  I+    +     + +    G +  LV +L SPN +  +
Sbjct: 4   IPKAVQYLSSQDEKYQAIGAYYIQHTCFQDE-SAKQQVYQLGGICKLVDLLRSPNQNVQQ 62

Query: 87  SSLLALLNLAVRNERNKVKIATAGAIPPLVEL-LKFQNGTLRELAAAAILTLSAAAPNKP 145
           ++  AL NL  R+  NK++      I   V L  +  N  +++     +  LS+    K 
Sbjct: 63  AAAGALRNLVFRSTTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKE 122

Query: 146 AIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179
            + A     L  +++   S     ++  +   + 
Sbjct: 123 ELIADALPVLADRVIIPFSGWCDGNSNMSREVVD 156

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.7 bits (140), Expect = 4e-10
 Identities = 32/240 (13%), Positives = 79/240 (32%), Gaps = 15/240 (6%)

Query: 5   ENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEF 64
              +     +  +     + A  E+ S    +   +  +    D     ++++ K     
Sbjct: 220 YRLDAEVPTRYRQLEYNARNAYTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWL 279

Query: 65  AAAGVVQPLVLMLVSPNLDAI------ESSLLALLNLAVRNERNKVKIATAGAIPPLVEL 118
             +  ++  + ++     DA           L      + +  +++       +P +  L
Sbjct: 280 YHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGMSQLIGLKEKGLPQIARL 339

Query: 119 LKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG------SVQGRVDAV 172
           L+  N  +    A+ +  +S        +  +   P + ++L S       S      A 
Sbjct: 340 LQSGNSDVVRSGASLLSNMSRHPLLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSAC 398

Query: 173 TALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAI 231
             +  L     + +     ++ +  +INL +      K AE A  LL  + SS+E +  +
Sbjct: 399 YTVRNLMASQPQLAKQYFSSSMLNNIINLCRSSAS-PKAAEAARLLLSDMWSSKELQGVL 457

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.1 bits (123), Expect = 5e-08
 Identities = 22/206 (10%), Positives = 60/206 (29%), Gaps = 15/206 (7%)

Query: 73  LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL-------KFQNGT 125
                 + +   + ++    L     N +    +  + AI   + L+         +   
Sbjct: 246 STGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACA 305

Query: 126 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENS 185
                  A   L ++  ++         P + ++L SG+        + L  +S      
Sbjct: 306 GALQNLTASKGLMSSGMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLH 365

Query: 186 SPILDATAVPPLINLLKDCKKYSKFAEK-----ATALLEILSSSEEGRIAITNSDGGILT 240
             + +    P +  LL      +  +E         +  +++S  +      +S   +  
Sbjct: 366 RVMGNQ-VFPEVTRLLTSHTGNTSNSEDILSSACYTVRNLMASQPQLAKQYFSS-SMLNN 423

Query: 241 LVETVED-GSLVSTQHAVGALLSLCQ 265
           ++       S  + + A   L  +  
Sbjct: 424 IINLCRSSASPKAAEAARLLLSDMWS 449

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 457

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.4 bits (95), Expect = 1e-04
 Identities = 24/122 (19%), Positives = 42/122 (34%), Gaps = 4/122 (3%)

Query: 194 VPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVST 253
           +P  +  L    +  +    A  +       E  +  +    GGI  LV+ +   +    
Sbjct: 4   IPKAVQYLSSQDEKYQA-IGAYYIQHTCFQDESAKQQVYQL-GGICKLVDLLRSPNQNVQ 61

Query: 254 QHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTF-EAQERARTLLDLLRDTPQE 312
           Q A GAL +L        +    ++  I   + L       E Q++   LL  L  T + 
Sbjct: 62  QAAAGALRNLVFRS-TTNKLETRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDEL 120

Query: 313 KR 314
           K 
Sbjct: 121 KE 122

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.5 bits (181), Expect = 3e-15
 Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 1/114 (0%)

Query: 66  AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT 125
            +        +      + +E    AL  LA R+  N++ I     IP  V+LL      
Sbjct: 417 TSMGGTQQQFVEGVRMEEIVEGCTGALHILA-RDVHNRIVIRGLNTIPLFVQLLYSPIEN 475

Query: 126 LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS 179
           ++ +AA  +  L+       AI A GA   L ++LHS +      A   L  +S
Sbjct: 476 IQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 73.4 bits (178), Expect = 8e-15
 Identities = 40/179 (22%), Positives = 63/179 (35%), Gaps = 24/179 (13%)

Query: 66  AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT 125
               +  +V +L  P+   +  + + L+        N   +   GAIP LV+LL   +  
Sbjct: 353 LHYGLPVVVKLLHPPSHWPLIKATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQD 412

Query: 126 LR----------------------ELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG 163
            +                      E    A+  L+    N+  I      PL VQ+L+S 
Sbjct: 413 TQRRTSMGGTQQQFVEGVRMEEIVEGCTGALHILARDVHNRIVIRGLNTIPLFVQLLYSP 472

Query: 164 SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILS 222
               +  A   L  L+  KE +  I    A  PL  LL    +    A  A A+L  +S
Sbjct: 473 IENIQRVAAGVLCELAQDKEAAEAIEAEGATAPLTELLHS--RNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.8 bits (174), Expect = 2e-14
 Identities = 26/141 (18%), Positives = 50/141 (35%), Gaps = 2/141 (1%)

Query: 66  AAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGT 125
           A   +  L  +L   +   +  + + +  L+ +       + +   +  +V  ++  N  
Sbjct: 15  ATRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKEASRHAIMRSPQMVSAIVRTMQNTNDV 74

Query: 126 -LRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC-KE 183
                 A  +  LS       AI  SG  P LV++L S        A+T LH L    + 
Sbjct: 75  ETARCTAGTLHNLSHHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEG 134

Query: 184 NSSPILDATAVPPLINLLKDC 204
               +  A  +  ++ LL   
Sbjct: 135 AKMAVRLAGGLQKMVALLNKT 155

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.9 bits (156), Expect = 4e-12
 Identities = 21/79 (26%), Positives = 32/79 (40%), Gaps = 1/79 (1%)

Query: 60  TRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL 119
            R        +   V +L SP  +    +   L  LA +++     I   GA  PL ELL
Sbjct: 452 NRIVIRGLNTIPLFVQLLYSPIENIQRVAAGVLCELA-QDKEAAEAIEAEGATAPLTELL 510

Query: 120 KFQNGTLRELAAAAILTLS 138
             +N  +   AAA +  +S
Sbjct: 511 HSRNEGVATYAAAVLFRMS 529

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 63.4 bits (152), Expect = 1e-11
 Identities = 43/210 (20%), Positives = 88/210 (41%), Gaps = 4/210 (1%)

Query: 27  IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAI 85
           I EL+  L + D     +AA  + ++ KK + +  +   +  +V  +V  M  + +++  
Sbjct: 19  IPELTKLLNDEDQVVVNKAAVMVHQLSKKEASR-HAIMRSPQMVSAIVRTMQNTNDVETA 77

Query: 86  ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNK 144
             +   L NL+  +    + I  +G IP LV++L     ++   A   +  L       K
Sbjct: 78  RCTAGTLHNLS-HHREGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAK 136

Query: 145 PAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDC 204
            A+  +G    +V +L+  +V+        L  L+   + S  I+ A+  P  +  +   
Sbjct: 137 MAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRT 196

Query: 205 KKYSKFAEKATALLEILSSSEEGRIAITNS 234
             Y K     + +L++LS     + AI  +
Sbjct: 197 YTYEKLLWTTSRVLKVLSVCSSNKPAIVEA 226

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]} Length = 529

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.9 bits (117), Expect = 3e-07
 Identities = 56/277 (20%), Positives = 96/277 (34%), Gaps = 30/277 (10%)

Query: 57  SLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLV 116
           S     +    G++  LV +L S +++ +  +   L NL   N +NK+ +   G I  LV
Sbjct: 255 SDAATKQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALV 314

Query: 117 ELLKFQNGTLRELAAAAILTLSAAAPNKP------AIAASGAAPLLVQILHSGSVQGRV- 169
             +            A        + ++       A+      P++V++LH  S    + 
Sbjct: 315 RTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLHPPSHWPLIK 374

Query: 170 DAVTALHYLSTCKENSSPILDATAVPPLINLLK--------------------DCKKYSK 209
             V  +  L+ C  N +P+ +  A+P L+ LL                     +  +  +
Sbjct: 375 ATVGLIRNLALCPANHAPLREQGAIPRLVQLLVRAHQDTQRRTSMGGTQQQFVEGVRMEE 434

Query: 210 FAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRD 269
             E  T  L IL+     RI I      I   V+ +        + A G L  L Q    
Sbjct: 435 IVEGCTGALHILARDVHNRIVIRGL-NTIPLFVQLLYSPIENIQRVAAGVLCELAQD--K 491

Query: 270 KYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLL 306
           +  + I  EGA   L  L           A  +L  +
Sbjct: 492 EAAEAIEAEGATAPLTELLHSRNEGVATYAAAVLFRM 528

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 69.0 bits (167), Expect = 2e-13
 Identities = 35/228 (15%), Positives = 85/228 (37%), Gaps = 2/228 (0%)

Query: 1   MGHEENKNKAATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKT 60
            G + ++   ++   ++ +  + Q  + +++ +L + D++ ++ A    R+++ +     
Sbjct: 52  DGADSDEEDESSVSADQQFYSQLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPP 111

Query: 61  RSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELL 119
                 AGVV  LV  M  +        +  AL N+A         +  A A+P  ++LL
Sbjct: 112 IDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTSAQTKVVVDADAVPLFIQLL 171

Query: 120 KFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL 178
              +  ++E A  A+  ++  +   +  +    A   ++ + +S        A   L  L
Sbjct: 172 YTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNL 231

Query: 179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE 226
              K+        +   P +  L          +   A+  +    +E
Sbjct: 232 CRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISYLSDGPQE 279

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 22/136 (16%), Positives = 47/136 (34%), Gaps = 4/136 (2%)

Query: 34  LINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALL 93
           L +     K EA   I  +   ++ +       A ++ PLV +L        + +  A+ 
Sbjct: 339 LSSPKENIKKEACWTISNITAGNT-EQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAIS 397

Query: 94  NLAVRNERNK---VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAAS 150
           N +    +       + + G I PL +LL+  +  + E+   A+  +             
Sbjct: 398 NASSGGLQRPDIIRYLVSQGCIKPLCDLLEIADNRIIEVTLDALENILKMGEADKEARGL 457

Query: 151 GAAPLLVQILHSGSVQ 166
                   I  +G ++
Sbjct: 458 NINENADFIEKAGGME 473

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 503

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 40.5 bits (93), Expect = 3e-04
 Identities = 34/171 (19%), Positives = 64/171 (37%), Gaps = 8/171 (4%)

Query: 79  SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLS 138
             +      +L A+ N+   N+     +  AG +P L  LL      +++ A   I  ++
Sbjct: 299 HESTLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNIT 358

Query: 139 AAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPIL----DATA 193
           A       A+  +   P LV++L     + + +A  A+   S+       I+        
Sbjct: 359 AGNTEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGC 418

Query: 194 VPPLINLLKDCKKYSKFAEKA-TALLEILSSSEEGRIAITNSDGGILTLVE 243
           + PL +LL+     ++  E    AL  IL   E  + A   +       +E
Sbjct: 419 IKPLCDLLEI--ADNRIIEVTLDALENILKMGEADKEARGLNINENADFIE 467

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 66.4 bits (160), Expect = 1e-12
 Identities = 36/185 (19%), Positives = 68/185 (36%), Gaps = 4/185 (2%)

Query: 24  QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLD 83
              +E++   + + +LE++++A +  RK++ +           AG++   V  L   +  
Sbjct: 12  NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCS 71

Query: 84  AI-ESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP 142
            I   S  AL N+A         +   GAIP  + LL   +  + E A  A+  ++    
Sbjct: 72  PIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGS 131

Query: 143 NKP-AIAASGAAPLLVQILHSGSVQGRVDAV--TALHYLSTCKENSSPILDATAVPPLIN 199
                +   GA   L+ +L    +              LS    N +P     AV  ++ 
Sbjct: 132 AFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILP 191

Query: 200 LLKDC 204
            L   
Sbjct: 192 TLVRL 196

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.7 bits (127), Expect = 2e-08
 Identities = 26/184 (14%), Positives = 51/184 (27%), Gaps = 6/184 (3%)

Query: 108 TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKP--AIAASGAAPLLVQIL-HSGS 164
              ++  +V+ +   N   +  A  A   L +     P   I  +G  P  V  L  +  
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDC 70

Query: 165 VQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS 224
              + ++  AL  +++     +  +      P    L          +   AL  I    
Sbjct: 71  SPIQFESAWALTNIASGTSEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDG 130

Query: 225 EEGRIAITNSDG---GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAI 281
              R  +         +  L               +   LS     ++    L   E  +
Sbjct: 131 SAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQIL 190

Query: 282 PGLL 285
           P L+
Sbjct: 191 PTLV 194

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 52.9 bits (125), Expect = 3e-08
 Identities = 23/130 (17%), Positives = 53/130 (40%), Gaps = 6/130 (4%)

Query: 11  ATDQEEEAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVV 70
              ++++        L+  L   L   D +T+ EAA  I       +++        G++
Sbjct: 300 TAGRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGII 359

Query: 71  QPLVLMLVSPNLDAIESSLLALLNLAV------RNERNKVKIATAGAIPPLVELLKFQNG 124
           +PL+ +L + +   I+  L A+ N+          E+  + I   G +  +  L + +N 
Sbjct: 360 EPLMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENE 419

Query: 125 TLRELAAAAI 134
           ++ + +   I
Sbjct: 420 SVYKASLNLI 429

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 49.8 bits (117), Expect = 2e-07
 Identities = 30/142 (21%), Positives = 56/142 (39%), Gaps = 6/142 (4%)

Query: 149 ASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPI---LDATAVPPLINLLKDCK 205
            + +   +V+ ++S +++ ++ A  A   L + +E   PI   + A  +P  ++ L    
Sbjct: 11  VNWSVEDIVKGINSNNLESQLQATQAARKLLS-REKQPPIDNIIRAGLIPKFVSFLGKTD 69

Query: 206 KYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ 265
                 E A AL  I S + E   A+ +   G +    ++               L    
Sbjct: 70  CSPIQFESAWALTNIASGTSEQTKAVVDG--GAIPAFISLLASPHAHISEQAVWALGNIA 127

Query: 266 SCRDKYRQLILKEGAIPGLLRL 287
                +R L++K GAI  LL L
Sbjct: 128 GDGSAFRDLVIKHGAIDPLLAL 149

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.3 bits (108), Expect = 4e-06
 Identities = 20/115 (17%), Positives = 37/115 (32%), Gaps = 8/115 (6%)

Query: 56  SSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV-RNERNKVKIATAGAIPP 114
                  +    G+V  LV +L   +    + +  A+ N          V +   G I P
Sbjct: 302 GRQDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEP 361

Query: 115 LVELLKFQNGTLRELAAAAILTLSAAAPNKP-------AIAASGAAPLLVQILHS 162
           L+ LL  ++  + ++   AI  +  AA            I   G    +  +   
Sbjct: 362 LMNLLSAKDTKIIQVILDAISNIFQAAEKLGETEKLSIMIEECGGLDKIEALQRH 416

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 40.2 bits (92), Expect = 3e-04
 Identities = 19/108 (17%), Positives = 38/108 (35%), Gaps = 3/108 (2%)

Query: 193 AVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVS 252
           +V  ++  +          +   A  ++LS  ++  I      G I   V  +       
Sbjct: 14  SVEDIVKGINS-NNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSP 72

Query: 253 TQ-HAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERA 299
            Q  +  AL ++  S   +  + ++  GAIP  + L         E+A
Sbjct: 73  IQFESAWALTNIA-SGTSEQTKAVVDGGAIPAFISLLASPHAHISEQA 119

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]} Length = 434

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.2 bits (87), Expect = 0.001
 Identities = 21/167 (12%), Positives = 57/167 (34%), Gaps = 5/167 (2%)

Query: 143 NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLK 202
               +  +GA  +   +L +     + +A   +  ++  +++    +    + P +  + 
Sbjct: 264 QTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVL 323

Query: 203 DCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS 262
               +    E A A+    S     +I      G I  L+  +        Q  + A+ +
Sbjct: 324 SKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMNLLSAKDTKIIQVILDAISN 383

Query: 263 LCQSC-----RDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLD 304
           + Q+       +K   +I + G +  +  L         + +  L++
Sbjct: 384 IFQAAEKLGETEKLSIMIEECGGLDKIEALQRHENESVYKASLNLIE 430

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.2 bits (121), Expect = 5e-08
 Identities = 49/239 (20%), Positives = 78/239 (32%), Gaps = 6/239 (2%)

Query: 73  LVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVE-LLKFQNGTLRELAA 131
                 + +    E +L  L +L   N  N         +  LV   L+     LR  AA
Sbjct: 22  AGEAEQAADQQEREGALELLADL-CENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAA 80

Query: 132 AAILTLSAAAP-NKPAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPIL 189
             I T S      +  +   GA   L+++L        RV A+ A+  L   +E      
Sbjct: 81  QLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVREQEAGLLQF 140

Query: 190 DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGS 249
                  ++      ++  K   K+  LL+ L            S G +  LV  V    
Sbjct: 141 LRLDGFSVLMRA-MQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLVALVRTEH 199

Query: 250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRD 308
               +H +GAL SL        R+    E  +  LLR   +   +  E  +  L+    
Sbjct: 200 SPFHEHVLGALCSLVTDFPQGVRECREPELGLEELLRHRCQLL-QQHEEYQEELEFCEK 257

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]} Length = 264

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.0 bits (118), Expect = 1e-07
 Identities = 32/253 (12%), Positives = 70/253 (27%), Gaps = 9/253 (3%)

Query: 23  KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPN 81
            Q +     +     D + +  A   +  +    ++   ++F     +  LV   L +  
Sbjct: 15  SQPMPPTAGEAEQAADQQEREGALELLADLC--ENMDNAADFCQLSGMHLLVGRYLEAGA 72

Query: 82  LDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKF-QNGTLRELAAAAILTLSAA 140
                 +   +   +      + ++   GA+  L+ LL      T+R  A  AI  L   
Sbjct: 73  AGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLLRLLDRDACDTVRVKALFAISCLVRE 132

Query: 141 APNKPAIAASGAAPLLVQIL--HSGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI 198
                          ++               A    + L    E+   +     V  L+
Sbjct: 133 QEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSMGMVQQLV 192

Query: 199 NLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG 258
            L++             AL  +++   +G       + G+  L+       L+       
Sbjct: 193 ALVRTEHSPFH-EHVLGALCSLVTDFPQGVRECREPELGLEELLRHRC--QLLQQHEEYQ 249

Query: 259 ALLSLCQSCRDKY 271
             L  C+      
Sbjct: 250 EELEFCEKLLQTC 262

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (92), Expect = 4e-04
 Identities = 29/206 (14%), Positives = 66/206 (32%), Gaps = 7/206 (3%)

Query: 77  LVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILT 136
           + S + D    +   L+    ++       +    +  +++LL+ +NG ++     A+  
Sbjct: 12  MTSSDKDFRFMATNDLMTELQKDSIKLDDDSERKVVKMILKLLEDKNGEVQN---LAVKC 68

Query: 137 LSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--KENSSPILDATAV 194
           L                  L   + S   Q R  +   L  +       +S   L A   
Sbjct: 69  LGPLVSKVKEYQVETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVC 128

Query: 195 PPLINLLKDCKKYSKFAEKATALLEILSS--SEEGRIAITNSDGGILTLVETVEDGSLVS 252
             +   L       +        L+I++   S +G + +      +  L+  +    L  
Sbjct: 129 KKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAV 188

Query: 253 TQHAVGALLSLCQSCRDKYRQLILKE 278
            +  + AL  L  SC +     +++ 
Sbjct: 189 RKRTIIALGHLVMSCGNIVFVDLIEH 214

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]} Length = 1207

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (87), Expect = 0.002
 Identities = 24/132 (18%), Positives = 41/132 (31%), Gaps = 7/132 (5%)

Query: 72   PLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAA 131
            P VL  ++         L +L  +        +K         L++  +      R + A
Sbjct: 890  PFVLQEITSQPKRQYLLLHSLKEIISSASVVGLKPYVENIWALLLKHCECAEEGTRNVVA 949

Query: 132  AAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKENSSPILDA 191
              +  L+   P           P L   L SGS   R   VTA+ +  +        L  
Sbjct: 950  ECLGKLTLIDPET-------LLPRLKGYLISGSSYARSSVVTAVKFTISDHPQPIDPLLK 1002

Query: 192  TAVPPLINLLKD 203
              +   +  L+D
Sbjct: 1003 NCIGDFLKTLED 1014

>d1bbha_ a.24.3.2 (A:) Cytochrome c' {Chromatium vinosum [TaxId: 1049]} Length = 131

class: All alpha proteins
fold: Four-helical up-and-down bundle
superfamily: Cytochromes
family: Cytochrome c'-like
domain: Cytochrome c'
species: Chromatium vinosum [TaxId: 1049]

 Score = 34.9 bits (80), Expect = 0.004
 Identities = 22/112 (19%), Positives = 40/112 (35%), Gaps = 8/112 (7%)

Query: 162 SGSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEIL 221
             +++G  +A           E ++ ++ A A   +  L       +    K     E  
Sbjct: 27  KANLEGEYNAAQV--------EAAANVIAAIANSGMGALYGPGTDKNVGDVKTRVKPEFF 78

Query: 222 SSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQ 273
            + E+         G   TL E    G   + + A G + + C+SC +KYR 
Sbjct: 79  QNMEDVGKIAREFVGAANTLAEVAATGEAEAVKTAFGDVGAACKSCHEKYRA 130

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	375
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1q1sc_	434	Importin alpha {Mouse (Mus musculus) [TaxId: 10090	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.97
d1wa5b_	503	Karyopherin alpha {Baker's yeast (Saccharomyces ce	99.97
d1jdha_	529	beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}	99.96
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.95
d1xm9a1	457	Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}	99.89
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.84
d1xqra1	264	Hsp70-binding protein 1 (HspBP1) {Human (Homo sapi	99.81
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.38
d1b3ua_	588	Constant regulatory domain of protein phosphatase	99.29
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	99.19
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.08
d2vglb_	579	Adaptin beta subunit N-terminal fragment {Human (H	99.08
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	99.06
d1oyza_	276	Hypothetical protein YibA {Escherichia coli [TaxId	98.91
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.9
d1qbkb_	888	Karyopherin beta2 {Human (Homo sapiens) [TaxId: 96	98.88
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.66
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.63
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.62
d1u6gc_	1207	Cullin-associated NEDD8-dissociated protein 1 (Tip	98.58
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.46
d2vgla_	584	Adaptin alpha C subunit N-terminal fragment {Mouse	98.41
d1ho8a_	477	Regulatory subunit H of the V-type ATPase {Baker's	98.39
d1ibrb_	458	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.35
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	98.35
d2bpta1	861	Importin beta {Baker's yeast (Saccharomyces cerevi	98.28
d1qgra_	876	Importin beta {Human (Homo sapiens) [TaxId: 9606]}	98.06
d1te4a_	111	MTH187 {Archaeon Methanobacterium thermoautotrophi	97.94
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.92
d1upka_	330	Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}	96.68
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.66
d1lrva_	233	Leucine-rich repeat variant {Azotobacter vinelandi	96.22
d1lsha1	336	Lipovitellin-phosvitin complex, superhelical domai	95.38
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	91.88
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	91.47
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	91.15
d2bnxa1	343	Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {	90.09
d1ujka_	145	ADP-ribosylation factor binding protein Gga1 {Huma	89.87
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	89.22
d1wa5c_	959	Exportin Cse1p {Baker's yeast (Saccharomyces cerev	88.72
d1mhqa_	143	ADP-ribosylation factor binding protein Gga2 {Huma	86.51
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	86.41
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	82.54
d1juqa_	151	ADP-ribosylation factor binding protein Gga3 {Huma	82.29
d1dvpa1	145	Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7	82.09

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=3.4e-29  Score=241.62  Aligned_cols=325  Identities=15%  Similarity=0.169  Sum_probs=283.1

Q ss_pred             HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      .+.+.|.++.|+.+|+ ..+++.+..|+++|.+++.+. +.....+.+.|+++.++.+|.+++.+++..++++|+|++.+
T Consensus       114 ~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~-~~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~  192 (503)
T d1wa5b_         114 VVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGT-SAQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGD  192 (503)
T ss_dssp             HHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTT
T ss_pred             HHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhh
Confidence            4567889999999998 457889999999999999988 77788888999999999999999999999999999999998


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249           99 NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                      ++.+|..+.+.|++++|+.++.+.++.++..++++|++++.+.. ........++++.|+.++.+.+..++..++++|.+
T Consensus       193 ~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~~~~~~~~~~~~~~~~l~~l~~~l~~~d~~~~~~~~~~l~~  272 (503)
T d1wa5b_         193 STDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLCRGKKPQPDWSVVSQALPTLAKLIYSMDTETLVDACWAISY  272 (503)
T ss_dssp             CHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHHCCSSSCCCHHHHGGGHHHHHHHTTCCCHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHh
Confidence            89999999999999999999999999999999999999998754 34444567899999999999999999999999999


Q ss_pred             hccCC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249          178 LSTCK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA  256 (375)
Q Consensus       178 L~~~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a  256 (375)
                      |+..+ +....+.+.|+++.++.++.++  +..+...++.++++++.........+...|+++.|..++.++++.++..+
T Consensus       273 l~~~~~~~~~~~~~~~~~~~l~~ll~~~--~~~v~~~al~~l~nl~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~  350 (503)
T d1wa5b_         273 LSDGPQEAIQAVIDVRIPKRLVELLSHE--STLVQTPALRAVGNIVTGNDLQTQVVINAGVLPALRLLLSSPKENIKKEA  350 (503)
T ss_dssp             HHSSCHHHHHHHHHTTCHHHHHHGGGCS--CHHHHHHHHHHHHHHTTSCHHHHHHHHHTTHHHHHHHHTTCSCHHHHHHH
T ss_pred             hccCCchhhhhhhhhhhhhhhhhcccCC--chhhhhhHHHHHHHHHHHHHHHHHhhhccchHHHHHHHhcCCCHHHHHHH
Confidence            99765 4456778899999999999876  45678889999999998765555444478999999999999999999999


Q ss_pred             HHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC---hh---hhhhhhhHHHHHHHHhhc
Q 017249          257 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP---QE---KRLSSSVLEKIVYDIAAR  330 (375)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~---~~---~~~~~g~~~~l~~~l~~~  330 (375)
                      +|+|.|++.++ +.....+++.|+++.++.++.++++.++..|+++|.++..+.   +.   .++..|+++.|+..|.  
T Consensus       351 ~~~l~nl~~~~-~~~~~~i~~~~~l~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~~~l~~~~~l~~l~~~L~--  427 (503)
T d1wa5b_         351 CWTISNITAGN-TEQIQAVIDANLIPPLVKLLEVAEYKTKKEACWAISNASSGGLQRPDIIRYLVSQGCIKPLCDLLE--  427 (503)
T ss_dssp             HHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTTCTHHHHHHHHTTCHHHHHHHTT--
T ss_pred             HHHHHHHhhcc-HHHHHHHHHccccchhHHhcccCChhHHHHHHHHHHHHHhcccccHHHHHHHHHCCcHHHHHHHhc--
Confidence            99999999876 577888899999999999999999999999999999997543   21   4678999999998885  


Q ss_pred             CCChHHHHHHHHHHHHHHHHH
Q 017249          331 VDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       331 ~~g~~~~~~~a~~~l~~l~~~  351 (375)
                       ....+....+..+|.++.+.
T Consensus       428 -~~d~~~~~~~L~~l~~ll~~  447 (503)
T d1wa5b_         428 -IADNRIIEVTLDALENILKM  447 (503)
T ss_dssp             -TCCHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHHHHHH
Confidence             33477778888888887643

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=5.5e-29  Score=234.90  Aligned_cols=333  Identities=17%  Similarity=0.196  Sum_probs=281.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChhh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNERN  102 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~~  102 (375)
                      ...++.+|+.|++++++.+..|+..+.++.........+.+++.|+++.|+++|++ ++++++..++++|.+++.++++.
T Consensus        12 ~~~i~~lv~~l~s~~~~~~~~a~~~l~~l~s~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~~~~   91 (434)
T d1q1sc_          12 NWSVEDIVKGINSNNLESQLQATQAARKLLSREKQPPIDNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGTSEQ   91 (434)
T ss_dssp             SCCHHHHHHHHTSSCHHHHHHHHHHHHHHHHSSSCCCHHHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSCHHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHhcCCCCchHHHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCChhh
Confidence            45689999999999999999999999999765523346788999999999999965 46889999999999999888889


Q ss_pred             HHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCC-----HHHHHHHHHHHH
Q 017249          103 KVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGS-----VQGRVDAVTALH  176 (375)
Q Consensus       103 r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~-----~~~~~~a~~~L~  176 (375)
                      +..+++.|+++.|+.+|.++++++++.++++|.|++.+.+ .+..+...|+++.|+.++...+     ......+++++.
T Consensus        92 ~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~  171 (434)
T d1q1sc_          92 TKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAGDGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLS  171 (434)
T ss_dssp             HHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHH
T ss_pred             hhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhccchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999998765 5677788999999999998764     345677888999


Q ss_pred             HhccCCCCc-hhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          177 YLSTCKENS-SPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       177 ~L~~~~~~~-~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      +++...... ......++++.++.++.++  ++.++..++++|.+++..+..+...+...|+++.|+.++.++++.++..
T Consensus       172 ~~~~~~~~~~~~~~~~~~l~~l~~ll~~~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~~~~~~~~  249 (434)
T d1q1sc_         172 NLCRNKNPAPPLDAVEQILPTLVRLLHHN--DPEVLADSCWAISYLTDGPNERIEMVVKKGVVPQLVKLLGATELPIVTP  249 (434)
T ss_dssp             HHTCCCTTCCCHHHHHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCSCHHHHHH
T ss_pred             HHhhcccccchhhhhhhHHHHHHHHHhcc--ccchhhhHHhhhcccchhhhhhHHHHhhcccchhcccccccchhhhhhc
Confidence            998765433 3334567889999998876  4567888999999999876655555557899999999999999999999


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCC
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVD  332 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~  332 (375)
                      ++.+|.+++.++ ++.+..+.+.|+++.|+.++.+.++.+++.|+++|.+++.+...   .+.+.|+++.++..+.   +
T Consensus       250 al~~l~~l~~~~-~~~~~~~~~~~~~~~l~~ll~~~~~~v~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~li~~l~---~  325 (434)
T d1q1sc_         250 ALRAIGNIVTGT-DEQTQKVIDAGALAVFPSLLTNPKTNIQKEATWTMSNITAGRQDQIQQVVNHGLVPFLVGVLS---K  325 (434)
T ss_dssp             HHHHHHHHTTSC-HHHHHHHHHTTGGGGHHHHTTCSSHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---S
T ss_pred             hhhhhhhHHhhh-hHHHHHHHhccccchHHHhhcccchhhhHHHHHHHhhhccccchhHHHHhhhhhHHHHHHHHh---c
Confidence            999999999876 56788889999999999999999999999999999999987644   4677899999998875   4


Q ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Q 017249          333 GADKAAETAKRLLQDMVQRSMELSMTRIQQ  362 (375)
Q Consensus       333 g~~~~~~~a~~~l~~l~~~s~~~~~~~~~~  362 (375)
                      ++.+.+..|..++.++...+-......+.+
T Consensus       326 ~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~  355 (434)
T d1q1sc_         326 ADFKTQKEAAWAITNYTSGGTVEQIVYLVH  355 (434)
T ss_dssp             SCHHHHHHHHHHHHHHHHHSCHHHHHHHHH
T ss_pred             cChHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence            558999999999999987654444444433

>d1q1sc_ a.118.1.1 (C:) Importin alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.97  E-value=1.6e-28  Score=231.78  Aligned_cols=325  Identities=16%  Similarity=0.203  Sum_probs=279.5

Q ss_pred             HHHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhc
Q 017249           19 WNQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAV   97 (375)
Q Consensus        19 ~~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~   97 (375)
                      ..+.+.|.+|.|+++|+ +++++++..|+++|.+++... ++.+..+++.|+++.|+++|.+++.++++.++++|.+++.
T Consensus        50 ~~i~~~g~i~~Lv~lL~~~~~~~v~~~a~~~L~~la~~~-~~~~~~i~~~~~i~~l~~~L~~~~~~~~~~a~~~L~nl~~  128 (434)
T d1q1sc_          50 DNIIRAGLIPKFVSFLGKTDCSPIQFESAWALTNIASGT-SEQTKAVVDGGAIPAFISLLASPHAHISEQAVWALGNIAG  128 (434)
T ss_dssp             HHHHHTTCHHHHHHHTTCGGGHHHHHHHHHHHHHHHTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHCCCHHHHHHHHccCCCHHHHHHHHHHHHHHhcCC-hhhhhHhhhccchhhhhhccccCCHHHHHHHHHHHHHHhc
Confidence            45677899999999997 557889999999999999888 7788899999999999999999999999999999999999


Q ss_pred             cChhhHHHHHHcCChHHHHHhhcCCC-----hHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           98 RNERNKVKIATAGAIPPLVELLKFQN-----GTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL~~~~-----~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                      +++..+..+.+.|+++.|+.++...+     ......+++++.+++.... ........++++.|..++.++++.++..+
T Consensus       129 ~~~~~~~~i~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~l~~ll~~~~~~~~~~a  208 (434)
T d1q1sc_         129 DGSAFRDLVIKHGAIDPLLALLAVPDLSTLACGYLRNLTWTLSNLCRNKNPAPPLDAVEQILPTLVRLLHHNDPEVLADS  208 (434)
T ss_dssp             TCHHHHHHHHHTTCHHHHHHHTCSSCGGGSCHHHHHHHHHHHHHHTCCCTTCCCHHHHHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             cchHHHHHHHHhhhhhHHHHHHHhcccccchHHHHHHHHHHHHHHhhcccccchhhhhhhHHHHHHHHHhccccchhhhH
Confidence            88999999999999999999997753     2445677888999987754 34444567889999999999999999999


Q ss_pred             HHHHHHhccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh-hhhHHHhhccCcHHHHHHHhccCC
Q 017249          172 VTALHYLSTCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE-EGRIAITNSDGGILTLVETVEDGS  249 (375)
Q Consensus       172 ~~~L~~L~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~~g~v~~Lv~lL~~~~  249 (375)
                      +++|.+|+..+. ....+...|+++.++.++.++  +..++..++.+|.+++... ..+..++ +.|+++.|+.++.+.+
T Consensus       209 ~~~l~~l~~~~~~~~~~~~~~~~~~~Lv~ll~~~--~~~~~~~al~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~  285 (434)
T d1q1sc_         209 CWAISYLTDGPNERIEMVVKKGVVPQLVKLLGAT--ELPIVTPALRAIGNIVTGTDEQTQKVI-DAGALAVFPSLLTNPK  285 (434)
T ss_dssp             HHHHHHHTSSCHHHHHHHHTTTCHHHHHHHHTCS--CHHHHHHHHHHHHHHTTSCHHHHHHHH-HTTGGGGHHHHTTCSS
T ss_pred             HhhhcccchhhhhhHHHHhhcccchhcccccccc--hhhhhhchhhhhhhHHhhhhHHHHHHH-hccccchHHHhhcccc
Confidence            999999997754 455567789999999999876  4578889999999999754 4556666 6899999999999999


Q ss_pred             hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh----hhhhhhhHHHHHH
Q 017249          250 LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE----KRLSSSVLEKIVY  325 (375)
Q Consensus       250 ~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~----~~~~~g~~~~l~~  325 (375)
                      +.++..|+++|.+++... ++....+.+.|+++.++.++.++++.++..|+++|.++..+...    .+.+.|+++.|+.
T Consensus       286 ~~v~~~a~~~L~~l~~~~-~~~~~~i~~~~~i~~li~~l~~~~~~v~~~a~~~l~nl~~~~~~~~~~~l~~~~~i~~L~~  364 (434)
T d1q1sc_         286 TNIQKEATWTMSNITAGR-QDQIQQVVNHGLVPFLVGVLSKADFKTQKEAAWAITNYTSGGTVEQIVYLVHCGIIEPLMN  364 (434)
T ss_dssp             HHHHHHHHHHHHHHTTSC-HHHHHHHHHTTCHHHHHHHHHSSCHHHHHHHHHHHHHHHHHSCHHHHHHHHHTTCHHHHHH
T ss_pred             hhhhHHHHHHHhhhcccc-chhHHHHhhhhhHHHHHHHHhccChHHHHHHHHHHHHHHhcCCHHHHHHHHHCCcHHHHHH
Confidence            999999999999999876 57788888999999999999999999999999999999876532    4678899999998


Q ss_pred             HHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          326 DIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       326 ~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      .+.   .+.++....+..+|.+|.+.
T Consensus       365 ll~---~~d~~~~~~~l~~l~~ll~~  387 (434)
T d1q1sc_         365 LLS---AKDTKIIQVILDAISNIFQA  387 (434)
T ss_dssp             HTT---SSCHHHHHHHHHHHHHHHHH
T ss_pred             Hhc---CCCHHHHHHHHHHHHHHHHH
Confidence            775   34588888898888888754

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.97  E-value=1.8e-29  Score=245.02  Aligned_cols=317  Identities=21%  Similarity=0.230  Sum_probs=275.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCC-CCHHHHHHHHHHHHHhhccChh
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      .+.+|.|+++|++++..++..|+..+.+++..+  ..+..++.. |+++.|+.+|++ .+.++++.++.+|.+++. +++
T Consensus        16 ~~aip~L~~lL~~~~~~v~~~A~~~l~~l~~~~--~~~~~~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~-~~~   92 (529)
T d1jdha_          16 TRAIPELTKLLNDEDQVVVNKAAVMVHQLSKKE--ASRHAIMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSH-HRE   92 (529)
T ss_dssp             -CHHHHHHHHHTCSCHHHHHHHHHHHHHHHTSH--HHHHHHHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTT-SHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcc--HHHHHHHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhC-Cch
Confidence            577999999999999999999999999999776  677767665 789999999965 578999999999999997 788


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST  180 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~  180 (375)
                      .+..+++.|++|.|+.+|++++++++..|+++|.+++.+.+. +..+...|+++.|+++|+++++.++..++++|.+++.
T Consensus        93 ~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~  172 (529)
T d1jdha_          93 GLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLHQEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAY  172 (529)
T ss_dssp             HHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHHCTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcccchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999999999988764 5667789999999999999999999999999999997


Q ss_pred             CC-CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHH
Q 017249          181 CK-ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGA  259 (375)
Q Consensus       181 ~~-~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~  259 (375)
                      .+ +.+..+...|+++.|+.++...+ ...+...+.+++.+++.+++++..++ +.|+++.|+.++.+++..++..++++
T Consensus       173 ~~~~~~~~~~~~~~~~~L~~ll~~~~-~~~~~~~~~~~l~~ls~~~~~~~~~~-~~g~~~~L~~ll~~~~~~~~~~a~~~  250 (529)
T d1jdha_         173 GNQESKLIILASGGPQALVNIMRTYT-YEKLLWTTSRVLKVLSVCSSNKPAIV-EAGGMQALGLHLTDPSQRLVQNCLWT  250 (529)
T ss_dssp             TCHHHHHHHHHTTHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTTSTTHHHHHH-HTTHHHHHHTTTTSSCHHHHHHHHHH
T ss_pred             hhhHHHHHHHhcccchHHHHHHHhhh-hHHHHHHHHHHHhhhhccccccchhh-hhhhhhhHHHHhcccchhhhhhhhhH
Confidence            64 55677778999999999998765 45678889999999999999999888 68999999999999999999999999


Q ss_pred             HHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHH
Q 017249          260 LLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADK  336 (375)
Q Consensus       260 L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~  336 (375)
                      +.+++....    ......|+++.|++++.++++.+++.|+++|.+++...+.   .+.+.|+++.++..+....+ .+.
T Consensus       251 l~~ls~~~~----~~~~~~~~i~~Lv~ll~~~~~~~~~~a~~~L~~l~~~~~~~~~~i~~~~~i~~Li~~l~~~~~-~~~  325 (529)
T d1jdha_         251 LRNLSDAAT----KQEGMEGLLGTLVQLLGSDDINVVTCAAGILSNLTCNNYKNKMMVCQVGGIEALVRTVLRAGD-RED  325 (529)
T ss_dssp             HHHHHTTCT----TCSCCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTTCHHHHHHHHHTTHHHHHHHHHHHHTT-CHH
T ss_pred             HHhcccccc----chhhhhhcchhhhhhcccccHHHHHHHHHHHHhhccchhHHHHHHHHhhhHHHHHHHHHhhhc-chh
Confidence            999976542    1223367899999999999999999999999999876643   46678899999988764444 378


Q ss_pred             HHHHHHHHHHHHHH
Q 017249          337 AAETAKRLLQDMVQ  350 (375)
Q Consensus       337 ~~~~a~~~l~~l~~  350 (375)
                      .++.|..+|.++..
T Consensus       326 ~~~~a~~aL~~l~~  339 (529)
T d1jdha_         326 ITEPAICALRHLTS  339 (529)
T ss_dssp             HHHHHHHHHHHHTS
T ss_pred             HHHHHHHHhhcccc
Confidence            88999999998863

>d1wa5b_ a.118.1.1 (B:) Karyopherin alpha {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin alpha
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.97  E-value=7.2e-28  Score=232.24  Aligned_cols=324  Identities=17%  Similarity=0.160  Sum_probs=279.5

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhccCh
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      .....++.++..+.+++.+.+..|+..++++.........+.+++.|+++.|+.+|.. .+.+++..|+++|.+++.+++
T Consensus        73 ~~~~~l~~~~~~~~s~~~~~~~~a~~~~r~~ls~~~~~~i~~ii~~g~i~~Lv~~l~~~~~~~iq~~a~~~L~ni~~~~~  152 (503)
T d1wa5b_          73 QLQQELPQMTQQLNSDDMQEQLSATVKFRQILSREHRPPIDVVIQAGVVPRLVEFMRENQPEMLQLEAAWALTNIASGTS  152 (503)
T ss_dssp             ---CCHHHHHHHHSCSSHHHHHHHHHHHHHHTCCSSSCSHHHHHHTTCHHHHHHTTSTTSCHHHHHHHHHHHHHHTTSCH
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCCchHHHHHHCCChHHHHHHHcCCCCHHHHHHHHHHHHHHHcCCH
Confidence            3456689999999999999999999999998765424567889999999999999975 468899999999999999888


Q ss_pred             hhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc
Q 017249          101 RNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS  179 (375)
Q Consensus       101 ~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~  179 (375)
                      .....+...|+++.|+.+|.+++.+++..++++|+|++... ..+..+...|+++.|+.++.+.+..++..++|+|.+++
T Consensus       153 ~~~~~~~~~g~i~~l~~lL~s~~~~i~~~a~~~L~nia~~~~~~r~~l~~~~~~~~L~~ll~~~~~~~~~~~~~~l~nl~  232 (503)
T d1wa5b_         153 AQTKVVVDADAVPLFIQLLYTGSVEVKEQAIWALGNVAGDSTDYRDYVLQCNAMEPILGLFNSNKPSLIRTATWTLSNLC  232 (503)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTCHHHHHHGGGSCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCChHHHHHHhcCCChhHHHHHHHHHHHHhhhhHHHHHHHHhhcccccchhhcccCCHHHHHHHHHHHHHHh
Confidence            88888999999999999999999999999999999999865 46788889999999999999999999999999999999


Q ss_pred             cCCCC-chhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh-hhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249          180 TCKEN-SSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE-GRIAITNSDGGILTLVETVEDGSLVSTQHAV  257 (375)
Q Consensus       180 ~~~~~-~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~-~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~  257 (375)
                      ..... .......++++.++.++.+.  +..+...++++|.+++.... ....++ +.|+++.++.++.+++..++..|+
T Consensus       233 ~~~~~~~~~~~~~~~l~~l~~~l~~~--d~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~l~~ll~~~~~~v~~~al  309 (503)
T d1wa5b_         233 RGKKPQPDWSVVSQALPTLAKLIYSM--DTETLVDACWAISYLSDGPQEAIQAVI-DVRIPKRLVELLSHESTLVQTPAL  309 (503)
T ss_dssp             CCSSSCCCHHHHGGGHHHHHHHTTCC--CHHHHHHHHHHHHHHHSSCHHHHHHHH-HTTCHHHHHHGGGCSCHHHHHHHH
T ss_pred             cCCccchHHHHHHHHHHHHHHHhccc--cHHHHHHHHHHHHhhccCCchhhhhhh-hhhhhhhhhhcccCCchhhhhhHH
Confidence            77544 33344578999999999876  44677889999999997544 455566 689999999999999999999999


Q ss_pred             HHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCCh
Q 017249          258 GALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGA  334 (375)
Q Consensus       258 ~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~  334 (375)
                      .+|.+++.+. +.....+.+.|+++.|..++.++++.+++.++++|.+++...+.   .++..|+++.++..+.   .++
T Consensus       310 ~~l~nl~~~~-~~~~~~~~~~~~l~~l~~ll~~~~~~i~~~~~~~l~nl~~~~~~~~~~i~~~~~l~~li~~l~---~~~  385 (503)
T d1wa5b_         310 RAVGNIVTGN-DLQTQVVINAGVLPALRLLLSSPKENIKKEACWTISNITAGNTEQIQAVIDANLIPPLVKLLE---VAE  385 (503)
T ss_dssp             HHHHHHTTSC-HHHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHTTSCHHHHHHHHHTTCHHHHHHHHH---HSC
T ss_pred             HHHHHHHHHH-HHHHHhhhccchHHHHHHHhcCCCHHHHHHHHHHHHHHhhccHHHHHHHHHccccchhHHhcc---cCC
Confidence            9999999877 46677788999999999999999999999999999999887644   5677899999998885   455


Q ss_pred             HHHHHHHHHHHHHHHHHH
Q 017249          335 DKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       335 ~~~~~~a~~~l~~l~~~s  352 (375)
                      .+.+..|..+|.++...+
T Consensus       386 ~~v~~~a~~~l~nl~~~~  403 (503)
T d1wa5b_         386 YKTKKEACWAISNASSGG  403 (503)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHhcc
Confidence            889999999999997543

>d1jdha_ a.118.1.1 (A:) beta-Catenin {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: beta-Catenin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=8.1e-28  Score=233.25  Aligned_cols=319  Identities=21%  Similarity=0.223  Sum_probs=271.2

Q ss_pred             HHhhHhHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           20 NQRKQALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      .+...+.++.|+..|+ .++++.+..|+.+|.+++.+.  +.+..+++.|+++.|+.+|++++++++..|+++|.+++.+
T Consensus        54 ~~~~~~~v~~l~~~L~~~~~~~~~~~a~~~L~~l~~~~--~~~~~i~~~g~i~~Li~lL~~~~~~v~~~a~~aL~~l~~~  131 (529)
T d1jdha_          54 IMRSPQMVSAIVRTMQNTNDVETARCTAGTLHNLSHHR--EGLLAIFKSGGIPALVKMLGSPVDSVLFYAITTLHNLLLH  131 (529)
T ss_dssp             HHTCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTSH--HHHHHHHHTTHHHHHHHHTTCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHcCCCCHHHHHHHHHHHHHHhCCc--hhHHHHHHCCCHHHHHHHhCCCCHHHHHHHHHHHHHhhcc
Confidence            3445678999999997 578999999999999998765  8889999999999999999999999999999999999998


Q ss_pred             ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCC-HHHHHHHHHHHH
Q 017249           99 NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGS-VQGRVDAVTALH  176 (375)
Q Consensus        99 ~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~-~~~~~~a~~~L~  176 (375)
                      ++..+..+.+.|++++|+.+|++++++++..++.+|.+++..++ .+..+...|+++.|+.++.+.+ ..++..+++++.
T Consensus       132 ~~~~~~~~~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~L~~ll~~~~~~~~~~~~~~~l~  211 (529)
T d1jdha_         132 QEGAKMAVRLAGGLQKMVALLNKTNVKFLAITTDCLQILAYGNQESKLIILASGGPQALVNIMRTYTYEKLLWTTSRVLK  211 (529)
T ss_dssp             CTTHHHHHHHHTHHHHHHHGGGCCCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHHCCCHHHHHHHHHHHH
T ss_pred             cchhhhHHHhcCCchHHHHHHHccChHHHHHHHHHHHHHhhhhhHHHHHHHhcccchHHHHHHHhhhhHHHHHHHHHHHh
Confidence            88899999999999999999999999999999999999997654 5666778999999999997665 678899999999


Q ss_pred             HhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHH
Q 017249          177 YLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHA  256 (375)
Q Consensus       177 ~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a  256 (375)
                      +++.+++++..+.+.|+++.|+.++.+.  +..+...+++++.+++.......  . ..|+++.|+.++.++++.++..|
T Consensus       212 ~ls~~~~~~~~~~~~g~~~~L~~ll~~~--~~~~~~~a~~~l~~ls~~~~~~~--~-~~~~i~~Lv~ll~~~~~~~~~~a  286 (529)
T d1jdha_         212 VLSVCSSNKPAIVEAGGMQALGLHLTDP--SQRLVQNCLWTLRNLSDAATKQE--G-MEGLLGTLVQLLGSDDINVVTCA  286 (529)
T ss_dssp             HHTTSTTHHHHHHHTTHHHHHHTTTTSS--CHHHHHHHHHHHHHHHTTCTTCS--C-CHHHHHHHHHHTTCSCHHHHHHH
T ss_pred             hhhccccccchhhhhhhhhhHHHHhccc--chhhhhhhhhHHHhccccccchh--h-hhhcchhhhhhcccccHHHHHHH
Confidence            9999999999999999999999999876  44678889999999986544332  2 35889999999999999999999


Q ss_pred             HHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh--hCCHHHHHHHHHHHHHhhcCChh------hhhhhhhHHHHHHHHh
Q 017249          257 VGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV--EGTFEAQERARTLLDLLRDTPQE------KRLSSSVLEKIVYDIA  328 (375)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~--~~~~~~~~~A~~~L~~l~~~~~~------~~~~~g~~~~l~~~l~  328 (375)
                      +++|++++.++ ++.+..+.+.|+++.|+.++.  +..+.+++.|+.+|++++.....      .....+.++.++..+.
T Consensus       287 ~~~L~~l~~~~-~~~~~~i~~~~~i~~Li~~l~~~~~~~~~~~~a~~aL~~l~~~~~~~~~~~~~i~~~~~l~~L~~ll~  365 (529)
T d1jdha_         287 AGILSNLTCNN-YKNKMMVCQVGGIEALVRTVLRAGDREDITEPAICALRHLTSRHQEAEMAQNAVRLHYGLPVVVKLLH  365 (529)
T ss_dssp             HHHHHHHTTTC-HHHHHHHHHTTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSSTTHHHHHHHHHHTTCHHHHHHTTS
T ss_pred             HHHHHhhccch-hHHHHHHHHhhhHHHHHHHHHhhhcchhHHHHHHHHhhcccchhhcchhhhhhHHhcccchhHHHHHh
Confidence            99999999876 567888889999999999774  45688999999999999866532      3456778898988775


Q ss_pred             hcCCChHHHHHHHHHHHHHH
Q 017249          329 ARVDGADKAAETAKRLLQDM  348 (375)
Q Consensus       329 ~~~~g~~~~~~~a~~~l~~l  348 (375)
                      .  .........+..++.++
T Consensus       366 ~--~~~~~~~~~~~~~l~~l  383 (529)
T d1jdha_         366 P--PSHWPLIKATVGLIRNL  383 (529)
T ss_dssp             T--TCCHHHHHHHHHHHHHH
T ss_pred             c--cchHHHHHHHHHHHhhc
Confidence            3  22244555666677666

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=1.7e-26  Score=216.56  Aligned_cols=317  Identities=20%  Similarity=0.232  Sum_probs=250.1

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+|.||++|+++++++|..|+++|.+++.++ ++++..+.+.|+++.|+++|++++++++..|+++|.+|+.++++++..
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~-~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~   81 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQD-ESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLE   81 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSC-SSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCC-HHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            5899999999999999999999999999887 789999999999999999999999999999999999999889999999


Q ss_pred             HHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHh----------------ccCCHHHH
Q 017249          106 IATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQIL----------------HSGSVQGR  168 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL----------------~~~~~~~~  168 (375)
                      +.+.|+++.|+.++.+. +++++..++++|++++..+..+......+. +.++..+                ...+..++
T Consensus        82 i~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~  160 (457)
T d1xm9a1          82 TRRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADAL-PVLADRVIIPFSGWCDGNSNMSREVVDPEVF  160 (457)
T ss_dssp             HHHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHH-HHHHHHTTHHHHTCC---------CCCHHHH
T ss_pred             HHHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhccc-HHHHHHHHhhhhhhhcchhhhhcccccHHHH
Confidence            99999999999998654 788999999999999998877666555443 3333332                23467888


Q ss_pred             HHHHHHHHHhccCCCCchhhhh-cCCcHHHHHHhhhcc------------------------------------------
Q 017249          169 VDAVTALHYLSTCKENSSPILD-ATAVPPLINLLKDCK------------------------------------------  205 (375)
Q Consensus       169 ~~a~~~L~~L~~~~~~~~~i~~-~g~i~~Lv~ll~~~~------------------------------------------  205 (375)
                      ..++++|.+++..++++..... .|+++.++.++.+..                                          
T Consensus       161 ~~a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  240 (457)
T d1xm9a1         161 FNATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNA  240 (457)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC---
T ss_pred             HHHHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhh
Confidence            8999999988877665554443 455666665543210                                          


Q ss_pred             -------------------------------------------------------cchHHHHHHHHHHHHhhCChh----
Q 017249          206 -------------------------------------------------------KYSKFAEKATALLEILSSSEE----  226 (375)
Q Consensus       206 -------------------------------------------------------~~~~~~~~a~~~L~~l~~~~~----  226 (375)
                                                                             ..+.+.+.+.+++.+++....    
T Consensus       241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~  320 (457)
T d1xm9a1         241 YTEKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSS  320 (457)
T ss_dssp             -------------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHH
T ss_pred             hhHHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchH
Confidence                                                                   011223455666777665322    


Q ss_pred             -hhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHH
Q 017249          227 -GRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERA  299 (375)
Q Consensus       227 -~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A  299 (375)
                       ..+..+...|+++.|+.++.++++.++..++++|++++.+.  +.+..+. .++++.|+.++..      .+++++..|
T Consensus       321 ~~~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~--~~~~~i~-~~~i~~li~~L~~~~~~~~~~~~v~~~a  397 (457)
T d1xm9a1         321 GMSQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHP--LLHRVMG-NQVFPEVTRLLTSHTGNTSNSEDILSSA  397 (457)
T ss_dssp             HHHHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSG--GGHHHHH-HHTHHHHHHTTTSCCSCSTTHHHHHHHH
T ss_pred             HHHHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhCh--hHHHHHH-HhhHHHHHHHHhccccCcCCcHHHHHHH
Confidence             23333336899999999999999999999999999999775  4455554 5789999998753      236799999


Q ss_pred             HHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHH
Q 017249          300 RTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMV  349 (375)
Q Consensus       300 ~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~  349 (375)
                      +.+|.++..+.++   .+.+.|++++|+..+.  ..++++.++.|..+|.+|.
T Consensus       398 ~~~L~~l~~~~~~~~~~l~~~g~i~~L~~l~~--~~~~~~~~~aA~~~L~~L~  448 (457)
T d1xm9a1         398 CYTVRNLMASQPQLAKQYFSSSMLNNIINLCR--SSASPKAAEAARLLLSDMW  448 (457)
T ss_dssp             HHHHHHHHTTCTHHHHHHCCHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHhcCCHHHHHHHHHCCCHHHHHHHHh--CCCCHHHHHHHHHHHHHHH
Confidence            9999999866533   6788999999998776  4555899999999999884

>d1xm9a1 a.118.1.24 (A:244-700) Plakophilin 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Plakophilin 1 helical region
domain: Plakophilin 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=1.8e-21  Score=182.01  Aligned_cols=283  Identities=19%  Similarity=0.204  Sum_probs=219.2

Q ss_pred             ChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhcc-CCChhHH
Q 017249           69 VVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAA-APNKPAI  147 (375)
Q Consensus        69 ~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~-~~~~~~i  147 (375)
                      .||.||++|++++++++..|+++|.+||.+++++|..+.+.|++|+|+++|++++++++..|+++|.+|+.. ++++..+
T Consensus         3 ~ip~lv~~L~~~~~~~~~~a~~~l~~l~~~~~~~~~~i~~~g~i~~Lv~lL~~~~~~v~~~a~~aL~~L~~~~~~~~~~i   82 (457)
T d1xm9a1           3 TIPKAVQYLSSQDEKYQAIGAYYIQHTCFQDESAKQQVYQLGGICKLVDLLRSPNQNVQQAAAGALRNLVFRSTTNKLET   82 (457)
T ss_dssp             CHHHHHHHHHSSCTHHHHHHHHHHHHHTSSCSSHHHHHHHTTHHHHHHHHTTSSCHHHHHHHHHHHHHHHSSCHHHHHHH
T ss_pred             CHHHHHHHhCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHCCcHHHHHHHHCCCCHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            589999999999999999999999999998999999999999999999999999999999999999999965 4578888


Q ss_pred             HhcCChHHHHHHhcc-CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhh-------------cccchHHHHH
Q 017249          148 AASGAAPLLVQILHS-GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKD-------------CKKYSKFAEK  213 (375)
Q Consensus       148 ~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~-------------~~~~~~~~~~  213 (375)
                      .+.|+++.|+.++.+ .+..++..++++|++++..+.........++.+.+..++..             ...+..+...
T Consensus        83 ~~~g~v~~li~~l~~~~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~  162 (457)
T d1xm9a1          83 RRQNGIREAVSLLRRTGNAEIQKQLTGLLWNLSSTDELKEELIADALPVLADRVIIPFSGWCDGNSNMSREVVDPEVFFN  162 (457)
T ss_dssp             HHTTCHHHHHHHHTTCCCHHHHHHHHHHHHHHHTSSSTHHHHHHHHHHHHHHHTTHHHHTCC---------CCCHHHHHH
T ss_pred             HHCCChHHHHHHHhccCcHHHHHHHHHHHHHHHhhhhhHHHHHhcccHHHHHHHHhhhhhhhcchhhhhcccccHHHHHH
Confidence            999999999999865 46789999999999999887766665554433333333221             1124467778


Q ss_pred             HHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-----------------------------------------------
Q 017249          214 ATALLEILSSSEEGRIAITNSDGGILTLVETVE-----------------------------------------------  246 (375)
Q Consensus       214 a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-----------------------------------------------  246 (375)
                      +.+++.+++.+++++.......|+++.|+.++.                                               
T Consensus       163 a~~~l~~~~~~~~~~~~~~~~~~~i~~l~~ll~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  242 (457)
T d1xm9a1         163 ATGCLRNLSSADAGRQTMRNYSGLIDSLMAYVQNCVAASRCDDKSVENCMCVLHNLSYRLDAEVPTRYRQLEYNARNAYT  242 (457)
T ss_dssp             HHHHHHHHTTSHHHHHHHTTSTTHHHHHHHHHHHHHHHTCTTCTTHHHHHHHHHHHTTTHHHHSCCHHHHHHHTC-----
T ss_pred             HHHHHHHHhcCchHHHHHHHHhccHHHHHHHHhcchhhhhhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhhh
Confidence            888898888888877776655566666655442                                               


Q ss_pred             ----------------------------------------------------cCChHHHHHHHHHHHHhcccCcH----H
Q 017249          247 ----------------------------------------------------DGSLVSTQHAVGALLSLCQSCRD----K  270 (375)
Q Consensus       247 ----------------------------------------------------~~~~~~~~~a~~~L~~l~~~~~~----~  270 (375)
                                                                          ..++..++.+.+++.+++.....    .
T Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~l~~l~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~  322 (457)
T d1xm9a1         243 EKSSTGCFSNKSDKMMNNNYDCPLPEEETNPKGSGWLYHSDAIRTYLNLMGKSKKDATLEACAGALQNLTASKGLMSSGM  322 (457)
T ss_dssp             -----------------------CCCCCSSCCGGGGGGSHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTTCSSSHHHHH
T ss_pred             HHHhhhhhhhhhHHHHHHHHhhhhHHhhhhhHHHHHHHhhcHHHHHHHHHhcccchHHHHHHHHHHHHHhhccccchHHH
Confidence                                                                11234455666677776654321    1


Q ss_pred             HHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh-hhhhhhhHHHHHHHHhhcCC---ChHHHHHHHHHHHH
Q 017249          271 YRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE-KRLSSSVLEKIVYDIAARVD---GADKAAETAKRLLQ  346 (375)
Q Consensus       271 ~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~-~~~~~g~~~~l~~~l~~~~~---g~~~~~~~a~~~l~  346 (375)
                      .+..+.+.|+++.|+.++.+.++.+++.++++|.+++.+... ..+..++++.++..|.....   ..++.+..|..+|.
T Consensus       323 ~~~~~~~~~~l~~L~~~l~~~~~~v~~~a~~~l~~La~~~~~~~~i~~~~i~~li~~L~~~~~~~~~~~~v~~~a~~~L~  402 (457)
T d1xm9a1         323 SQLIGLKEKGLPQIARLLQSGNSDVVRSGASLLSNMSRHPLLHRVMGNQVFPEVTRLLTSHTGNTSNSEDILSSACYTVR  402 (457)
T ss_dssp             HHHHHTTSCCHHHHHHHTTCSCHHHHHHHHHHHHHHHTSGGGHHHHHHHTHHHHHHTTTSCCSCSTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHhhhcCccHHHHHHHHHHHHHHhhChhHHHHHHHhhHHHHHHHHhccccCcCCcHHHHHHHHHHHH
Confidence            234445689999999999999999999999999999988754 55667788999887754322   34667888999999


Q ss_pred             HHHHH
Q 017249          347 DMVQR  351 (375)
Q Consensus       347 ~l~~~  351 (375)
                      +|...
T Consensus       403 ~l~~~  407 (457)
T d1xm9a1         403 NLMAS  407 (457)
T ss_dssp             HHHTT
T ss_pred             HHhcC
Confidence            88743

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.84  E-value=1.8e-19  Score=158.52  Aligned_cols=193  Identities=16%  Similarity=0.125  Sum_probs=169.2

Q ss_pred             CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHH-hhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHH
Q 017249           36 NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVL-MLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPP  114 (375)
Q Consensus        36 s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~-~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~  114 (375)
                      +.+.+.+..|+..|.+++.+.  +++..+...|++++++. ++++++++++..|+++|++++.+++.++..+.+.|++|.
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~--d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~  105 (264)
T d1xqra1          28 AADQQEREGALELLADLCENM--DNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRK  105 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSH--HHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCH--HHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHH
Confidence            346778889999999999765  78888999999999986 788999999999999999999988999999999999999


Q ss_pred             HHHhhcC-CChHHHHHHHHHHHHhhccCC-ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhcc-CCCCchhhhhc
Q 017249          115 LVELLKF-QNGTLRELAAAAILTLSAAAP-NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLST-CKENSSPILDA  191 (375)
Q Consensus       115 Lv~lL~~-~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~-~~~~~~~i~~~  191 (375)
                      |++++.+ .++.++..++++|.+++.+.+ ++..+...|+++.|++++++++..++..++++|.+++. +++.+..+.+.
T Consensus       106 Lv~lL~~~~~~~v~~~a~~aL~~l~~~~~~~~~~~~~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  185 (264)
T d1xqra1         106 LLRLLDRDACDTVRVKALFAISCLVREQEAGLLQFLRLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGHPEHKGTLCSM  185 (264)
T ss_dssp             HHHHHHHCSCHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHT
T ss_pred             HHHHhhcCCCHHHHHHHHHHHHHHhccchhhHHHHHHhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhccHHHHHHHHHh
Confidence            9999965 578899999999999997765 57777899999999999999999999999999999985 46788888999


Q ss_pred             CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHh
Q 017249          192 TAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAIT  232 (375)
Q Consensus       192 g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~  232 (375)
                      |+++.|+.++.+++  ..+++.++++|.+|+.. +.....+.
T Consensus       186 ~~v~~L~~lL~~~~--~~~~~~a~~aL~~L~~~~~~~~~~~~  225 (264)
T d1xqra1         186 GMVQQLVALVRTEH--SPFHEHVLGALCSLVTDFPQGVRECR  225 (264)
T ss_dssp             THHHHHHHHHTSCC--STHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             hhHHHHHHHHcCCC--HHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            99999999998764  46789999999999975 44444444

>d1xqra1 a.118.1.21 (A:87-350) Hsp70-binding protein 1 (HspBP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HspBP1 domain
domain: Hsp70-binding protein 1 (HspBP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.81  E-value=2.9e-19  Score=157.11  Aligned_cols=189  Identities=17%  Similarity=0.110  Sum_probs=165.9

Q ss_pred             CCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHH-HhccCCHHHHHHHHHHHHHhccCC-CCchhhhhcCCcHHHH
Q 017249          121 FQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQ-ILHSGSVQGRVDAVTALHYLSTCK-ENSSPILDATAVPPLI  198 (375)
Q Consensus       121 ~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~-lL~~~~~~~~~~a~~~L~~L~~~~-~~~~~i~~~g~i~~Lv  198 (375)
                      ..+.+.+..|+.+|.+|+.+.+++..+...|++++++. ++++++++++..|+++|.+++.++ ..+..+.+.|+++.|+
T Consensus        28 ~~~~~~~~~Al~~L~~L~~~~d~a~~l~~~gg~~~ll~~ll~s~~~~vr~~A~~~L~~l~~~~~~~~~~~~~~~~i~~Lv  107 (264)
T d1xqra1          28 AADQQEREGALELLADLCENMDNAADFCQLSGMHLLVGRYLEAGAAGLRWRAAQLIGTCSQNVAAIQEQVLGLGALRKLL  107 (264)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSHHHHHHHHHTTHHHHHHHTTTTCSSHHHHHHHHHHHHHHHTTCHHHHHHHHHTTHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCHHHHHHHHHcCCHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHH
Confidence            34567788999999999988888888889999999886 788899999999999999999865 5677788899999999


Q ss_pred             HHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHH
Q 017249          199 NLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILK  277 (375)
Q Consensus       199 ~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~  277 (375)
                      +++.+.. +..++..++++|.+++.+ +.++..+. ..|+++.|+.++.++++.++..++++|++++..+ +..+..+.+
T Consensus       108 ~lL~~~~-~~~v~~~a~~aL~~l~~~~~~~~~~~~-~~~gi~~L~~lL~~~~~~~~~~a~~~L~~l~~~~-~~~~~~~~~  184 (264)
T d1xqra1         108 RLLDRDA-CDTVRVKALFAISCLVREQEAGLLQFL-RLDGFSVLMRAMQQQVQKLKVKSAFLLQNLLVGH-PEHKGTLCS  184 (264)
T ss_dssp             HHHHHCS-CHHHHHHHHHHHHHHHTTCHHHHHHHH-HTTHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHH
T ss_pred             HHhhcCC-CHHHHHHHHHHHHHHhccchhhHHHHH-HhhhhhHHHHHHhcCchHHHHHHHHHHHHHHhcc-HHHHHHHHH
Confidence            9998754 456888999999999975 55565666 7899999999999999999999999999999876 467888899


Q ss_pred             cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChh
Q 017249          278 EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQE  312 (375)
Q Consensus       278 ~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~  312 (375)
                      .|+++.|+.++.++++.+++.|+++|.+|+...++
T Consensus       185 ~~~v~~L~~lL~~~~~~~~~~a~~aL~~L~~~~~~  219 (264)
T d1xqra1         185 MGMVQQLVALVRTEHSPFHEHVLGALCSLVTDFPQ  219 (264)
T ss_dssp             TTHHHHHHHHHTSCCSTHHHHHHHHHHHHHTTCHH
T ss_pred             hhhHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999999999999999999999987754

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=2.1e-11  Score=117.92  Aligned_cols=306  Identities=13%  Similarity=0.127  Sum_probs=219.6

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.+...+++++++++..|+..+..++..-.........-...++.+...+.+.++.++..++.++..++..-  ..
T Consensus       280 ~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~~~~~~~~~~~i~~~l~~~~~d~~~~vr~~~~~~l~~~~~~~--~~  357 (588)
T d1b3ua_         280 TDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSADCRENVIMSQILPCIKELVSDANQHVKSALASVIMGLSPIL--GK  357 (588)
T ss_dssp             HTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCTTTHHHHHHHTHHHHHHHHHTCSCHHHHHHHHTTGGGGHHHH--CH
T ss_pred             hhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhhhhhhhhhHHHHHHHHHHhhcCCChHHHHHHHHHHhhhhhcc--ch
Confidence            4567888888889999999999999999887642333333334567888889999999999999998888876421  11


Q ss_pred             HHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccCCC
Q 017249          104 VKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTCKE  183 (375)
Q Consensus       104 ~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~~~  183 (375)
                       .-.....+|.+...+.+.+++++..++.++..+...-... . .....++.+..++.+.+..++..++.++..++..-.
T Consensus       358 -~~~~~~l~p~l~~~l~d~~~~v~~~~~~~l~~~~~~~~~~-~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~  434 (588)
T d1b3ua_         358 -DNTIEHLLPLFLAQLKDECPEVRLNIISNLDCVNEVIGIR-Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLG  434 (588)
T ss_dssp             -HHHHHHTHHHHHHHHTCSCHHHHHHHHTTCHHHHHHSCHH-H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHC
T ss_pred             -hHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhhcchh-h-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcC
Confidence             1222346889999999999999999888877765432211 1 124567888889999999999999999998874311


Q ss_pred             CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHh
Q 017249          184 NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSL  263 (375)
Q Consensus       184 ~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l  263 (375)
                        .........+.+..++.++  ...++..|+.+|..|+..-.. ...  ....++.+..++.+++...|..++.++..+
T Consensus       435 --~~~~~~~l~~~l~~~l~D~--~~~VR~~A~~~L~~l~~~~~~-~~~--~~~i~~~l~~~~~~~~~~~R~~~~~~l~~l  507 (588)
T d1b3ua_         435 --VEFFDEKLNSLCMAWLVDH--VYAIREAATSNLKKLVEKFGK-EWA--HATIIPKVLAMSGDPNYLHRMTTLFCINVL  507 (588)
T ss_dssp             --GGGCCHHHHHHHHHGGGCS--SHHHHHHHHHHHHHHHHHHCH-HHH--HHHTHHHHHHTTTCSCHHHHHHHHHHHHHH
T ss_pred             --hHhHHHHHHHHHHhhccCC--chhHHHHHHHHHHHHHHHhCc-HHH--HHHHHHHHHHHhcCCCHHHHHHHHHHHHHH
Confidence              0111223455666677654  446888899999888742111 111  134678888888888989999999999888


Q ss_pred             cccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHH
Q 017249          264 CQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAKR  343 (375)
Q Consensus       264 ~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~  343 (375)
                      .....    .......++|.|++++.+..|.+|..++++|..+............+.+ ++..|.  .|...+.+.-|.+
T Consensus       508 ~~~~~----~~~~~~~ilp~ll~~~~D~v~nVR~~a~~~l~~i~~~~~~~~~~~~i~~-~l~~L~--~D~d~dVr~~A~~  580 (588)
T d1b3ua_         508 SEVCG----QDITTKHMLPTVLRMAGDPVANVRFNVAKSLQKIGPILDNSTLQSEVKP-ILEKLT--QDQDVDVKYFAQE  580 (588)
T ss_dssp             HHHHH----HHHHHHHTHHHHHHGGGCSCHHHHHHHHHHHHHHGGGSCHHHHHHHHHH-HHHHHT--TCSSHHHHHHHHH
T ss_pred             HHHcC----hHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHHHH-HHHHHc--CCCCHHHHHHHHH
Confidence            65431    2234566899999999999999999999999999876655444444444 555565  5667999999999


Q ss_pred             HHHHH
Q 017249          344 LLQDM  348 (375)
Q Consensus       344 ~l~~l  348 (375)
                      +++.|
T Consensus       581 al~~l  585 (588)
T d1b3ua_         581 ALTVL  585 (588)
T ss_dssp             HHHHT
T ss_pred             HHHHH
Confidence            98865

>d1b3ua_ a.118.1.2 (A:) Constant regulatory domain of protein phosphatase 2a, pr65alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Constant regulatory domain of protein phosphatase 2a, pr65alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.6e-10  Score=111.54  Aligned_cols=306  Identities=12%  Similarity=0.117  Sum_probs=212.8

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      ..++.+..++++.++.++..++..+..++..-..+.    .....++.+..++++++..++..++.++..++...+.   
T Consensus       164 ~l~~~~~~l~~D~~~~VR~~a~~~l~~~~~~~~~~~----~~~~l~~~l~~l~~d~~~~vr~~a~~~l~~i~~~~~~---  236 (588)
T d1b3ua_         164 ELRQYFRNLCSDDTPMVRRAAASKLGEFAKVLELDN----VKSEIIPMFSNLASDEQDSVRLLAVEACVNIAQLLPQ---  236 (588)
T ss_dssp             HHHHHHHHHHTCSCHHHHHHHHHHHHHHHHTSCHHH----HHHTHHHHHHHHHTCSCHHHHTTHHHHHHHHHHHSCH---
T ss_pred             HHHHHHHHHhccCCHHHHHHHHHHHHHHHHHhcHHH----HHHHHHHHHHHHhcCCchhhHHHHHHHHHHhhccCCH---
Confidence            356677777888999999999999999988651222    2245577888889999999999999999998753222   


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC--C
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC--K  182 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~--~  182 (375)
                      .......+|.+..++.+.+..+|..++.+|.+++..-..  .+.....++.+..++.+.+..++..++..+..++..  .
T Consensus       237 ~~~~~~i~~~l~~~~~D~~~~Vr~~~~~~l~~l~~~~~~--~~~~~~l~~~l~~ll~d~~~~vr~~a~~~l~~~~~~l~~  314 (588)
T d1b3ua_         237 EDLEALVMPTLRQAAEDKSWRVRYMVADKFTELQKAVGP--EITKTDLVPAFQNLMKDCEAEVRAAASHKVKEFCENLSA  314 (588)
T ss_dssp             HHHHHHTHHHHHHHHTCSSHHHHHHHHHTHHHHHHHHCH--HHHHHTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHTSCT
T ss_pred             HHHHHHHHHHHHHhcccccHHHHHHHHHhHHHHHHHhhh--hhhhhhhhHHHHHHHhccchHHHHHHHHHHHHHHHHHhh
Confidence            122233678888899888999999999999998754221  123346789999999999999999999999988754  2


Q ss_pred             CCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHH
Q 017249          183 ENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLS  262 (375)
Q Consensus       183 ~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~  262 (375)
                      .......-...++.+...+.+.  ...++..+..++..++..-. .....  ...++.+..++.+.++.++..++..+..
T Consensus       315 ~~~~~~~~~~i~~~l~~~~~d~--~~~vr~~~~~~l~~~~~~~~-~~~~~--~~l~p~l~~~l~d~~~~v~~~~~~~l~~  389 (588)
T d1b3ua_         315 DCRENVIMSQILPCIKELVSDA--NQHVKSALASVIMGLSPILG-KDNTI--EHLLPLFLAQLKDECPEVRLNIISNLDC  389 (588)
T ss_dssp             TTHHHHHHHTHHHHHHHHHTCS--CHHHHHHHHTTGGGGHHHHC-HHHHH--HHTHHHHHHHHTCSCHHHHHHHHTTCHH
T ss_pred             hhhhhhhHHHHHHHHHHhhcCC--ChHHHHHHHHHHhhhhhccc-hhHHH--HHHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence            2223223345677777777664  44566666666655542111 11112  2467888888888888899888888777


Q ss_pred             hcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHHHHHH
Q 017249          263 LCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAAETAK  342 (375)
Q Consensus       263 l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~  342 (375)
                      +...-...   . .....++.+..++.+.++++|+.++.++..++..-....+...+.+-++..+   .|.....+..|.
T Consensus       390 ~~~~~~~~---~-~~~~ll~~l~~~~~d~~~~~r~~~~~~l~~l~~~~~~~~~~~~l~~~l~~~l---~D~~~~VR~~A~  462 (588)
T d1b3ua_         390 VNEVIGIR---Q-LSQSLLPAIVELAEDAKWRVRLAIIEYMPLLAGQLGVEFFDEKLNSLCMAWL---VDHVYAIREAAT  462 (588)
T ss_dssp             HHHHSCHH---H-HHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHCGGGCCHHHHHHHHHGG---GCSSHHHHHHHH
T ss_pred             HHhhcchh---h-hhhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHcChHhHHHHHHHHHHhhc---cCCchhHHHHHH
Confidence            66543211   1 1234677888888888999999999988888764433444445555555444   355577788888


Q ss_pred             HHHHHHHHH
Q 017249          343 RLLQDMVQR  351 (375)
Q Consensus       343 ~~l~~l~~~  351 (375)
                      +.|..|.+.
T Consensus       463 ~~L~~l~~~  471 (588)
T d1b3ua_         463 SNLKKLVEK  471 (588)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            888777644

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=99.19  E-value=6.8e-09  Score=89.58  Aligned_cols=260  Identities=16%  Similarity=0.070  Sum_probs=181.2

Q ss_pred             HHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccC
Q 017249           20 NQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRN   99 (375)
Q Consensus        20 ~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~   99 (375)
                      ...+......|+++|+++++.++..|+..|..+...            ..++.|+++++++++.++..|+.+|..+... 
T Consensus        14 ~~~~~~~~~~L~~~L~d~~~~vR~~A~~~L~~~~~~------------~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~-   80 (276)
T d1oyza_          14 NQCKKLNDDELFRLLDDHNSLKRISSARVLQLRGGQ------------DAVRLAIEFCSDKNYIRRDIGAFILGQIKIC-   80 (276)
T ss_dssp             HHHHTSCHHHHHHHTTCSSHHHHHHHHHHHHHHCCH------------HHHHHHHHHHTCSSHHHHHHHHHHHHHSCCC-
T ss_pred             cccccCCHHHHHHHhcCCCHHHHHHHHHHHHhhCCH------------hHHHHHHHHHcCCCHHHHHHHHHHHHHhccc-
Confidence            444556678899999999999999999999876321            2479999999999999999999999998753 


Q ss_pred             hhhHHHHHHcCChHHHH-HhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHh
Q 017249          100 ERNKVKIATAGAIPPLV-ELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYL  178 (375)
Q Consensus       100 ~~~r~~i~~~g~i~~Lv-~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L  178 (375)
                      ......+     ++.+. .++++.++.++..++.+|.++......    .....++.+...+.+.++.++..++.++...
T Consensus        81 ~~~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~~~~~~~----~~~~~~~~l~~~~~d~~~~vr~~a~~~l~~~  151 (276)
T d1oyza_          81 KKCEDNV-----FNILNNMALNDKSACVRATAIESTAQRCKKNPI----YSPKIVEQSQITAFDKSTNVRRATAFAISVI  151 (276)
T ss_dssp             TTTHHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHHHHHCGG----GHHHHHHHHHHHTTCSCHHHHHHHHHHHHTC
T ss_pred             cccccch-----HHHHHHHHhcCCChhHHHHHHHHHHHHccccch----hhHHHHHHHHHHhcCcchHHHHHHHHHHhhc
Confidence            2222222     22333 356778999999999999998765432    1234567888888889999998888877654


Q ss_pred             ccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHH
Q 017249          179 STCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVG  258 (375)
Q Consensus       179 ~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~  258 (375)
                      .          ....++.+..++...  ...+...+..++..+....         ...++.++..+.+.+..++..+..
T Consensus       152 ~----------~~~~~~~l~~l~~~~--~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~  210 (276)
T d1oyza_         152 N----------DKATIPLLINLLKDP--NGDVRNWAAFAININKYDN---------SDIRDCFVEMLQDKNEEVRIEAII  210 (276)
T ss_dssp             -------------CCHHHHHHHHTCS--SHHHHHHHHHHHHHHTCCC---------HHHHHHHHHHTTCSCHHHHHHHHH
T ss_pred             c----------hHHHHHHHHHhcccc--cchhhhhHHHHHHhhhccc---------cccchhhhhhhhhhhhhhhhhhcc
Confidence            2          245667787777665  3345555566555544322         224455677778888888888888


Q ss_pred             HHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhhhhhhHHHHHHHHhhcCCChHHHH
Q 017249          259 ALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRLSSSVLEKIVYDIAARVDGADKAA  338 (375)
Q Consensus       259 ~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~~~g~~~~l~~~l~~~~~g~~~~~  338 (375)
                      ++..+..            ..+++.|+..+.+  +.++..|+++|..+...        ..++.|...|....  +...+
T Consensus       211 al~~~~~------------~~~~~~L~~~l~d--~~vr~~a~~aL~~ig~~--------~~~~~L~~~l~~~~--d~~vr  266 (276)
T d1oyza_         211 GLSYRKD------------KRVLSVLCDELKK--NTVYDDIIEAAGELGDK--------TLLPVLDTMLYKFD--DNEII  266 (276)
T ss_dssp             HHHHTTC------------GGGHHHHHHHHTS--SSCCHHHHHHHHHHCCG--------GGHHHHHHHHTTSS--CCHHH
T ss_pred             ccchhhh------------hhhHHHHHHHhCC--hHHHHHHHHHHHHcCCH--------HHHHHHHHHHccCC--CHHHH
Confidence            8876532            3457777777764  56889999999988632        37777777675332  35666


Q ss_pred             HHHHHHHH
Q 017249          339 ETAKRLLQ  346 (375)
Q Consensus       339 ~~a~~~l~  346 (375)
                      ..|...|+
T Consensus       267 ~~A~~~L~  274 (276)
T d1oyza_         267 TSAIDKLK  274 (276)
T ss_dssp             HHHHHHHT
T ss_pred             HHHHHHHc
Confidence            66666553

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=4.9e-09  Score=106.13  Aligned_cols=319  Identities=13%  Similarity=0.056  Sum_probs=194.0

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKI  106 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i  106 (375)
                      ++.+.+.+.++++..+..|+.++..++.+. .+...... ...++.|++.++++++.+|..++++|+.++.........-
T Consensus       397 l~~l~~~l~s~~~~~reaa~~alg~i~eg~-~~~~~~~l-~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~  474 (888)
T d1qbkb_         397 LPLLKELLFHHEWVVKESGILVLGAIAEGC-MQGMIPYL-PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDT  474 (888)
T ss_dssp             HHHHHHTTTSSSHHHHHHHHHHHHHHTTTS-HHHHTTTH-HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHH
T ss_pred             HHHHHHhhccchhHHHHHHHHHhhhhhhhH-HHHhcccc-hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhh
Confidence            444555667889999999999999988766 22211111 1357888899999999999999999999885321111112


Q ss_pred             HHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhccC---
Q 017249          107 ATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLSTC---  181 (375)
Q Consensus       107 ~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~~~---  181 (375)
                      .-...++.++..+.+.++.++..|+++|.++.....  ..+.+  ...++.|+..+...+......+..++..++..   
T Consensus       475 ~~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l~p~~--~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~  552 (888)
T d1qbkb_         475 YLKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTELVPYL--AYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGH  552 (888)
T ss_dssp             HTTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSSGGGH--HHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGG
T ss_pred             hhhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhhhhHH--HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhc
Confidence            234578888998889999999999999999986532  12221  34566777777776655555555444444321   


Q ss_pred             CCCchhhhh-----------------------------------cCCc-------HHHHHHhhh---------------c
Q 017249          182 KENSSPILD-----------------------------------ATAV-------PPLINLLKD---------------C  204 (375)
Q Consensus       182 ~~~~~~i~~-----------------------------------~g~i-------~~Lv~ll~~---------------~  204 (375)
                      .-....+.+                                   .+..       +.++.++..               .
T Consensus       553 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~le~l~~i~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  632 (888)
T d1qbkb_         553 HLNKPEYIQMLMPPLIQKWNMLKDEDKDLFPLLECLSSVATALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYE  632 (888)
T ss_dssp             GGCSHHHHHHHHHHHHHHHTTSCTTCTTHHHHHHHHHHHHHHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSC
T ss_pred             cccchHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhccccccc
Confidence            000000000                                   0010       111111110               0


Q ss_pred             ccchHHHHHHHHHHHHhhCC-hhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHH
Q 017249          205 KKYSKFAEKATALLEILSSS-EEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPG  283 (375)
Q Consensus       205 ~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~  283 (375)
                      ..+..+...++.++..+... ......++.....++.+...+.+.++.+++.|..++..++....+.....+  ..+++.
T Consensus       633 ~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l--~~~~~~  710 (888)
T d1qbkb_         633 APDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQCMQDKMPEVRQSSFALLGDLTKACFQHVKPCI--ADFMPI  710 (888)
T ss_dssp             CCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH--HHHHHH
T ss_pred             chhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHHHhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH--HHHHHH
Confidence            01112223334444444321 111222222345667777888888899999999999988876533222222  236677


Q ss_pred             HHHHhhhCCHHHHHHHHHHHHHhhcCChhh--hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHH
Q 017249          284 LLRLTVEGTFEAQERARTLLDLLRDTPQEK--RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRS  352 (375)
Q Consensus       284 L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~--~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s  352 (375)
                      |.+.+.+..+.++..|++++..++..-...  -.-..+++.|+..|.... -....++.+..++..|....
T Consensus       711 l~~~L~~~~~~v~~~a~~~ig~ia~~~~~~~~py~~~il~~L~~il~~~~-~~~~v~~n~~~~lgrl~~~~  780 (888)
T d1qbkb_         711 LGTNLNPEFISVCNNATWAIGEISIQMGIEMQPYIPMVLHQLVEIINRPN-TPKTLLENTAITIGRLGYVC  780 (888)
T ss_dssp             HHHTCCGGGHHHHHHHHHHHHHHHHHTGGGGGGGSHHHHHHHHHHHTCTT-CCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHhCcCCHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHcCCC-ccHHHHHHHHHHHHHHHHHC
Confidence            777778888999999999999887655432  222468888988886322 22556788888888886543

>d1oyza_ a.118.1.16 (A:) Hypothetical protein YibA {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: Hypothetical protein YibA
species: Escherichia coli [TaxId: 562]

Probab=98.91  E-value=1.7e-07  Score=80.46  Aligned_cols=231  Identities=13%  Similarity=0.032  Sum_probs=163.9

Q ss_pred             HHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHH-HhhCCCCHHHHHHHHHHHHHh
Q 017249           17 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLV-LMLVSPNLDAIESSLLALLNL   95 (375)
Q Consensus        17 ~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv-~~L~~~~~~~~~~a~~~L~~L   95 (375)
                      ....+...+.++.|+.+++++++.++..|+.+|..+....  .....+     ++.+. .+++++++.++..++.+|.++
T Consensus        42 ~L~~~~~~~~~~~l~~~l~d~~~~vr~~a~~aL~~l~~~~--~~~~~~-----~~~l~~~~l~d~~~~vr~~a~~aL~~~  114 (276)
T d1oyza_          42 VLQLRGGQDAVRLAIEFCSDKNYIRRDIGAFILGQIKICK--KCEDNV-----FNILNNMALNDKSACVRATAIESTAQR  114 (276)
T ss_dssp             HHHHHCCHHHHHHHHHHHTCSSHHHHHHHHHHHHHSCCCT--TTHHHH-----HHHHHHHHHHCSCHHHHHHHHHHHHHH
T ss_pred             HHHhhCCHhHHHHHHHHHcCCCHHHHHHHHHHHHHhcccc--ccccch-----HHHHHHHHhcCCChhHHHHHHHHHHHH
Confidence            3345556778999999999999999999999999886544  222211     33344 356788999999999999999


Q ss_pred             hccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           96 AVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        96 ~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      ....+.....     .++.+...+.+.++.++..++.++...          .....++.+..++...+..+...+..++
T Consensus       115 ~~~~~~~~~~-----~~~~l~~~~~d~~~~vr~~a~~~l~~~----------~~~~~~~~l~~l~~~~~~~~~~~~~~~~  179 (276)
T d1oyza_         115 CKKNPIYSPK-----IVEQSQITAFDKSTNVRRATAFAISVI----------NDKATIPLLINLLKDPNGDVRNWAAFAI  179 (276)
T ss_dssp             HHHCGGGHHH-----HHHHHHHHTTCSCHHHHHHHHHHHHTC-------------CCHHHHHHHHTCSSHHHHHHHHHHH
T ss_pred             ccccchhhHH-----HHHHHHHHhcCcchHHHHHHHHHHhhc----------chHHHHHHHHHhcccccchhhhhHHHHH
Confidence            8765443333     356788888888999998887777654          2356688899999999888888888887


Q ss_pred             HHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHH
Q 017249          176 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQH  255 (375)
Q Consensus       176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~  255 (375)
                      ........        ...+.++..+.+.  +..+...+..++..+.           ....++.|+..+.++  .++..
T Consensus       180 ~~~~~~~~--------~~~~~~~~~~~~~--~~~~~~~~~~al~~~~-----------~~~~~~~L~~~l~d~--~vr~~  236 (276)
T d1oyza_         180 NINKYDNS--------DIRDCFVEMLQDK--NEEVRIEAIIGLSYRK-----------DKRVLSVLCDELKKN--TVYDD  236 (276)
T ss_dssp             HHHTCCCH--------HHHHHHHHHTTCS--CHHHHHHHHHHHHHTT-----------CGGGHHHHHHHHTSS--SCCHH
T ss_pred             Hhhhcccc--------ccchhhhhhhhhh--hhhhhhhhccccchhh-----------hhhhHHHHHHHhCCh--HHHHH
Confidence            76654321        1334455555544  4456666666665432           346788899888754  47889


Q ss_pred             HHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHH
Q 017249          256 AVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLD  304 (375)
Q Consensus       256 a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~  304 (375)
                      ++.+|..+..            .+.++.|..++.+ .+..++..|...|.
T Consensus       237 a~~aL~~ig~------------~~~~~~L~~~l~~~~d~~vr~~A~~~L~  274 (276)
T d1oyza_         237 IIEAAGELGD------------KTLLPVLDTMLYKFDDNEIITSAIDKLK  274 (276)
T ss_dssp             HHHHHHHHCC------------GGGHHHHHHHHTTSSCCHHHHHHHHHHT
T ss_pred             HHHHHHHcCC------------HHHHHHHHHHHccCCCHHHHHHHHHHHc
Confidence            9999987741            3577888887765 57899999888764

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.90  E-value=4.1e-08  Score=89.47  Aligned_cols=278  Identities=12%  Similarity=0.049  Sum_probs=184.6

Q ss_pred             HHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           27 IEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAA-GVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        27 l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~-g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+.++..+.+++......+...+..++... ..+....-.. .....+-.+..+++.+.+.-++.++..+.. .+++|..
T Consensus       124 ~~~f~~~l~~~d~~~~~~s~~i~~ll~~~~-~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr-~~~~R~~  201 (477)
T d1ho8a_         124 EQLFDVSLKGDFQTVLISGFNVVSLLVQNG-LHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAV-IPEYRDV  201 (477)
T ss_dssp             HHHHHHCSCSSHHHHHHHHHHHHHHHTSTT-TCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHT-SHHHHHH
T ss_pred             hHHHHHhccCchhHHHHHHHHHHHHHHhcc-ccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhc-CccHHHH
Confidence            345556666777778888888888887765 3332211111 223333444467788888899999999988 6889988


Q ss_pred             HHH--cCChHHHHHhhcC-----------------CChHHHHHHHHHHHHhhccCCChhHHHhc--CChHHHHHHhccC-
Q 017249          106 IAT--AGAIPPLVELLKF-----------------QNGTLRELAAAAILTLSAAAPNKPAIAAS--GAAPLLVQILHSG-  163 (375)
Q Consensus       106 i~~--~g~i~~Lv~lL~~-----------------~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~--~~l~~L~~lL~~~-  163 (375)
                      +..  ...+++|+..|+.                 ....++.+++-|+|-|+.+++....+...  +.++.|+++++.. 
T Consensus       202 fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~  281 (477)
T d1ho8a_         202 IWLHEKKFMPTLFKILQRATDSQLATRIVATNSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI  281 (477)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHC-------------CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC
T ss_pred             HHHcccchHHHHHHHHHHHhcccccchhhcccCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh
Confidence            864  4457777777743                 12467899999999999877666665544  4488888888654 


Q ss_pred             CHHHHHHHHHHHHHhccCCC--C----chhhhhcCCcHHHHHHhhhcccchHHHHH---------------------HHH
Q 017249          164 SVQGRVDAVTALHYLSTCKE--N----SSPILDATAVPPLINLLKDCKKYSKFAEK---------------------ATA  216 (375)
Q Consensus       164 ~~~~~~~a~~~L~~L~~~~~--~----~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~---------------------a~~  216 (375)
                      ...+.+-++.+|.|+.....  +    ...++..++++.+-.+....-.++++.+.                     ...
T Consensus       282 KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~~v~~~~l~~l~~L~~r~~~Dedl~edl~~L~~~L~~~~k~lTsfd~Y~~E  361 (477)
T d1ho8a_         282 KEKVSRLCISIILQCCSTRVKQHKKVIKQLLLLGNALPTVQSLSERKYSDEELRQDISNLKEILENEYQELTSFDEYVAE  361 (477)
T ss_dssp             SHHHHHHHHHHHHHTTSSSSTTHHHHHHHHHHHHCHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHHHHHTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHHHHcchhHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHHHhcCcHHHHHHH
Confidence            57889999999999986532  1    22344445555444444333334443321                     111


Q ss_pred             HHH-HhhCChhhhH---------HHhh-ccCcHHHHHHHhcc----------CChHHHHHHHHHHHHhcccCcHHHHHHH
Q 017249          217 LLE-ILSSSEEGRI---------AITN-SDGGILTLVETVED----------GSLVSTQHAVGALLSLCQSCRDKYRQLI  275 (375)
Q Consensus       217 ~L~-~l~~~~~~~~---------~~~~-~~g~v~~Lv~lL~~----------~~~~~~~~a~~~L~~l~~~~~~~~~~~l  275 (375)
                      +.. +|.-+|.++.         .+-. +...+..|+.+|++          .++.+..-||.=|+.++.+. |+.+..+
T Consensus       362 v~Sg~L~WSP~H~se~FW~EN~~kf~e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~-P~gr~il  440 (477)
T d1ho8a_         362 LDSKLLCWSPPHVDNGFWSDNIDEFKKDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELL-PESIDVL  440 (477)
T ss_dssp             HHHTCCCCCGGGGCHHHHHHHSGGGSSGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHC-TTHHHHH
T ss_pred             HhcCCCCCCCCcCChhHHHHHHHhhcccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHC-cchhHHH
Confidence            111 2222333331         1111 12346789999862          24667778889999999988 5778888


Q ss_pred             HHcCChHHHHHHhhhCCHHHHHHHHHHHHHhh
Q 017249          276 LKEGAIPGLLRLTVEGTFEAQERARTLLDLLR  307 (375)
Q Consensus       276 ~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~  307 (375)
                      -+.|+=..+++++.+.|+++|.+|..++..+-
T Consensus       441 ~~lg~K~~vM~Lm~h~d~~Vr~eAL~avQklm  472 (477)
T d1ho8a_         441 DKTGGKADIMELLNHSDSRVKYEALKATQAII  472 (477)
T ss_dssp             HHHSHHHHHHHHTSCSSHHHHHHHHHHHHHHH
T ss_pred             HHcCcHHHHHHHhcCCCHHHHHHHHHHHHHHH
Confidence            88999999999999999999999999987664

>d1qbkb_ a.118.1.1 (B:) Karyopherin beta2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Karyopherin beta2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=2e-07  Score=93.94  Aligned_cols=327  Identities=13%  Similarity=0.089  Sum_probs=194.4

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh--
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER--  101 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~--  101 (375)
                      ...++.++..++++++.++..++++|.+++....+.....+ -...++.++..+.++++.++..|+++|.+++.....  
T Consensus       435 ~~li~~l~~~l~d~~~~Vr~~a~~~l~~~~~~~~~~~~~~~-~~~~l~~ll~~l~d~~~~V~~~a~~al~~l~~~~~~~l  513 (888)
T d1qbkb_         435 PELIPHLIQCLSDKKALVRSITCWTLSRYAHWVVSQPPDTY-LKPLMTELLKRILDSNKRVQEAACSAFATLEEEACTEL  513 (888)
T ss_dssp             HHHHHHHHHHTTSSCHHHHHHHHHHHHHTHHHHHSSCHHHH-TTTHHHHHHHHHSSSCHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             hhhhHHHHHhccCCCHHHHHHHHHHHHHHHHHhhhhhhhhh-hhhhHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhhhhh
Confidence            34677888888999999999999999998864311222222 235788899999999999999999999988742110  


Q ss_pred             ---------------------hHHH-------HHHc------------CChHHHHHhhcC---CChHHHHHHHHHH----
Q 017249          102 ---------------------NKVK-------IATA------------GAIPPLVELLKF---QNGTLRELAAAAI----  134 (375)
Q Consensus       102 ---------------------~r~~-------i~~~------------g~i~~Lv~lL~~---~~~~~~~~a~~~L----  134 (375)
                                           ++..       +.+.            ..++.+......   .+.. ......++    
T Consensus       514 ~p~~~~il~~l~~~l~~~~~~~~~~~~~al~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~-~~~~le~l~~i~  592 (888)
T d1qbkb_         514 VPYLAYILDTLVFAFSKYQHKNLLILYDAIGTLADSVGHHLNKPEYIQMLMPPLIQKWNMLKDEDKD-LFPLLECLSSVA  592 (888)
T ss_dssp             GGGHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHGGGGCSHHHHHHHHHHHHHHHTTSCTTCTT-HHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHhcccchHH-HHHHHHHHHHHH
Confidence                                 0000       0000            001111111110   1100 00111111    


Q ss_pred             ------------------------------------------------------HHhhcc-C-CChhHHHhcCChHHHHH
Q 017249          135 ------------------------------------------------------LTLSAA-A-PNKPAIAASGAAPLLVQ  158 (375)
Q Consensus       135 ------------------------------------------------------~~Ls~~-~-~~~~~i~~~~~l~~L~~  158 (375)
                                                                            ..+... . .....+.....++.+..
T Consensus       593 ~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~l~~~l~~~~~~~~~~~~l~~~l~~  672 (888)
T d1qbkb_         593 TALQSGFLPYCEPVYQRCVNLVQKTLAQAMLNNAQPDQYEAPDKDFMIVALDLLSGLAEGLGGNIEQLVARSNILTLMYQ  672 (888)
T ss_dssp             HHSTTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTTSCCCCTHHHHHHHHHHHHHHHHHTTTTHHHHHTSCHHHHHHH
T ss_pred             HHhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHHHHhhhhhhhhhhHhhHHHHHHH
Confidence                                                                  111100 0 00111112234555666


Q ss_pred             HhccCCHHHHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhHHHhhccC
Q 017249          159 ILHSGSVQGRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRIAITNSDG  236 (375)
Q Consensus       159 lL~~~~~~~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~~~~~~~g  236 (375)
                      .+.+.+..++..|..++..|+.. ........ ...++.+..-+.+.  ...++.+++++++.++.. ++.-...+  ..
T Consensus       673 ~l~~~~~~vr~~a~~llgdl~~~~~~~~~~~l-~~~~~~l~~~L~~~--~~~v~~~a~~~ig~ia~~~~~~~~py~--~~  747 (888)
T d1qbkb_         673 CMQDKMPEVRQSSFALLGDLTKACFQHVKPCI-ADFMPILGTNLNPE--FISVCNNATWAIGEISIQMGIEMQPYI--PM  747 (888)
T ss_dssp             HHTCSSHHHHHHHHHHHHHHHHHCGGGTGGGH-HHHHHHHHHTCCGG--GHHHHHHHHHHHHHHHHHTGGGGGGGS--HH
T ss_pred             HhCCCChHHHHHHHHHHHHHHHhhhHHHHHHH-HHHHHHHHHHhCcC--CHHHHHHHHHHHHHHHHHHHHHhhhhH--HH
Confidence            77778888999998888888743 22222211 23556666666554  346788899999988753 33222222  35


Q ss_pred             cHHHHHHHhccCC--hHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh-CCHHHHHHHHHHHHHhhcCChhh
Q 017249          237 GILTLVETVEDGS--LVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE-GTFEAQERARTLLDLLRDTPQEK  313 (375)
Q Consensus       237 ~v~~Lv~lL~~~~--~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~-~~~~~~~~A~~~L~~l~~~~~~~  313 (375)
                      .++.|+..+.+++  ..++++++.+|+.++... ++..... =..+++.++..+.. .+.+.++.|...+..+-+..++.
T Consensus       748 il~~L~~il~~~~~~~~v~~n~~~~lgrl~~~~-p~~~~~~-l~~~~~~~~~~l~~~~d~~ek~~~~~g~~~~i~~~p~~  825 (888)
T d1qbkb_         748 VLHQLVEIINRPNTPKTLLENTAITIGRLGYVC-PQEVAPM-LQQFIRPWCTSLRNIRDNEEKDSAFRGICTMISVNPSG  825 (888)
T ss_dssp             HHHHHHHHHTCTTCCHHHHHHHHHHHHHHHHHC-HHHHGGG-GGGTHHHHHHHHTTSCCSHHHHHHHHHHHHHHHHCGGG
T ss_pred             HHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHC-HHHHHhh-HHHHHHHHHHHhccCCCcHHHHHHHHHHHHHHHHCcHH
Confidence            7888889997643  568899999999998776 3311111 14577777776654 57777888888887777666543


Q ss_pred             hhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHHHHHHhHHHHH
Q 017249          314 RLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQRSMELSMTRIQ  361 (375)
Q Consensus       314 ~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~s~~~~~~~~~  361 (375)
                      +.  ..+..++..+.+..+..+..++...++|..+.+...+.+-..++
T Consensus       826 ~~--~~l~~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~~~~~w~~~~  871 (888)
T d1qbkb_         826 VI--QDFIFFCDAVASWINPKDDLRDMFCKILHGFKNQVGDENWRRFS  871 (888)
T ss_dssp             TG--GGHHHHHHHHTTCSSCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             HH--HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHcCcHhHHHHH
Confidence            33  23344555566555667889999999999998776555544443

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=4.6e-08  Score=90.04  Aligned_cols=297  Identities=13%  Similarity=0.085  Sum_probs=185.5

Q ss_pred             hHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccCh
Q 017249           25 ALIEELSDKLIN--GDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +.++.++..+.+  .++..+..++.++..++... ......-.-...++.++..+.+.  +.+++..++.++..+.....
T Consensus       127 ~~~~~l~~~l~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~~~~~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~~  205 (458)
T d1ibrb_         127 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDI-DPEQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEFTK  205 (458)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHS-CGGGTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTTH
T ss_pred             chhHHHHHHHHhhcchHHHHHHHHHHHHHHHhhc-cchhhhhhHHHHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhhh
Confidence            578888888864  45667778888888887654 11111111123467788888654  57899999999999886433


Q ss_pred             hhHH-HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC--hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249          101 RNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN--KPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus       101 ~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~--~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                      .... ........+.+...+.+++++++..++.+|..++.....  ... ......+.+...+.+.+..++..++..+..
T Consensus       206 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~  284 (458)
T d1ibrb_         206 ANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETY-MGPALFAITIEAMKSDIDEVALQGIEFWSN  284 (458)
T ss_dssp             HHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGGGCTTT-TTTTHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             hhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHH-HHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            2211 122233456777888888999999999999998764321  111 122233445566677788888888888777


Q ss_pred             hccCC-----------------CCchhhhh----cCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHHH
Q 017249          178 LSTCK-----------------ENSSPILD----ATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIAI  231 (375)
Q Consensus       178 L~~~~-----------------~~~~~i~~----~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~  231 (375)
                      ++...                 ........    ...++.+...+....     ....++..+..++..++.....  .+
T Consensus       285 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~  362 (458)
T d1ibrb_         285 VCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--DI  362 (458)
T ss_dssp             HHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--TH
T ss_pred             HHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhhhcchhhhccccccHHHHHHHHHHHHHHhccH--hh
Confidence            75311                 00000000    122333444433211     1113556677777766642211  12


Q ss_pred             hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +  ...++.+...+.+++...|+.|+.+|..++.+..++.... .-..+++.|+..+.+.++.+|..|+++|..+++.-+
T Consensus       363 ~--~~l~~~i~~~l~s~~~~~r~aal~~l~~i~~~~~~~~~~~-~l~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~  439 (458)
T d1ibrb_         363 V--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLKP-LVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELLP  439 (458)
T ss_dssp             H--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCTTTTCT-TTTTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGG
T ss_pred             h--hHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCHhHHHH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhh
Confidence            2  2355667777888889999999999999987542221111 124688999999999999999999999999987665


Q ss_pred             hhhhhhhhHHHHHHHHh
Q 017249          312 EKRLSSSVLEKIVYDIA  328 (375)
Q Consensus       312 ~~~~~~g~~~~l~~~l~  328 (375)
                      +.....-.+++++..|.
T Consensus       440 ~~~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         440 EAAINDVYLAPLLQCLI  456 (458)
T ss_dssp             GGCCSTTTHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHh
Confidence            54444456777777664

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.66  E-value=5.9e-07  Score=93.15  Aligned_cols=314  Identities=12%  Similarity=0.057  Sum_probs=190.3

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ...++.|+..|.+.++++|..|+++|..+...-++....     ..++.|+..+.+++...+..+..+|..+...-+...
T Consensus        44 ~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~~~-----~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~  118 (1207)
T d1u6gc_          44 RKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQVE-----TIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPAS  118 (1207)
T ss_dssp             HHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHHHH-----HHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC---
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhhHH-----HHHHHHHHHhcCCchhhhHHHHHHHHHHHHhccccc
Confidence            356888999999999999999999999998876222222     347788888888787888888888777654221110


Q ss_pred             -----HHHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249          104 -----VKIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus       104 -----~~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                           ...+....++.+...+.+. +..++..++.+|..+.......-.-.....++.|+..+.+++..++..|+.+|..
T Consensus       119 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l~~~~g~~l~~~~~~il~~l~~~l~~~~~~vR~~A~~~l~~  198 (1207)
T d1u6gc_         119 SGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADMLSRQGGLLVNFHPSILTCLLPQLTSPRLAVRKRTIIALGH  198 (1207)
T ss_dssp             --CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHHHHHTCSSCTTTHHHHHHHHGGGGGCSSHHHHHHHHHHHHH
T ss_pred             ccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHHHHHhhHhhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                 1111122344555554443 7788999999998887653321110123457778888899999999999999999


Q ss_pred             hccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhccCChHHHHHHH
Q 017249          178 LSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVEDGSLVSTQHAV  257 (375)
Q Consensus       178 L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~  257 (375)
                      |+..-...   .-...++.++..+..+... ..+..+..++..++.....+..-. -...++.++..+.+.++.+++.++
T Consensus       199 l~~~~~~~---~~~~~~~~ll~~l~~~~~~-~~~~~~~~~l~~l~~~~~~~~~~~-l~~i~~~l~~~l~~~~~~~r~~al  273 (1207)
T d1u6gc_         199 LVMSCGNI---VFVDLIEHLLSELSKNDSM-STTRTYIQCIAAISRQAGHRIGEY-LEKIIPLVVKFCNVDDDELREYCI  273 (1207)
T ss_dssp             HTTTC-------CTTHHHHHHHHHHHTCSS-CSCTTHHHHHHHHHHHSSGGGTTS-CTTHHHHHHHHHSSCCTTTHHHHH
T ss_pred             HHHHCCHH---HHHHHHHHHHHHHccCCCH-HHHHHHHHHHHHHHHHcchhhHHH-HHHHHHHHHHHhcCccHHHHHHHH
Confidence            98542211   1123566777666554322 233445666666664221111111 246788899999988899999999


Q ss_pred             HHHHHhcccCcHH---HHHHHHH--c------------------------------CChHHHHHHhhhCCHHHHHHHHHH
Q 017249          258 GALLSLCQSCRDK---YRQLILK--E------------------------------GAIPGLLRLTVEGTFEAQERARTL  302 (375)
Q Consensus       258 ~~L~~l~~~~~~~---~~~~l~~--~------------------------------g~v~~L~~ll~~~~~~~~~~A~~~  302 (375)
                      .++..++.....+   ....++.  .                              ...+.......+.+..+|..|+.+
T Consensus       274 ~~l~~l~~~~~~~~~~~~~~ii~~~l~~l~~dp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~s~~vR~~a~~~  353 (1207)
T d1u6gc_         274 QAFESFVRRCPKEVYPHVSTIINICLKYLTYDPNYNYDDEDEDENAMDADGGDDDDQGSDDEYSDDDDMSWKVRRAAAKC  353 (1207)
T ss_dssp             HHHHHHHHCTTCCCHHHHHHHHHHHTTCCCCC------------------------------------CTTHHHHHHHHH
T ss_pred             HHHHHHHHhChhhhhhhHHHHHHHHHHHHhcCcchhhhhHHHHHhhhhhhccchhhhhHHHHHhhhhhhhHHHHHHHHHH
Confidence            9988886654211   1111110  0                              011111112234557899999999


Q ss_pred             HHHhhcCChhhh--hhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          303 LDLLRDTPQEKR--LSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       303 L~~l~~~~~~~~--~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      |..+....++..  .-..+++.++..+   .+..+..+..+..++..+.+
T Consensus       354 L~~l~~~~~~~l~~~~~~~~~~L~~~l---~d~~~~vr~~~~~~l~~l~~  400 (1207)
T d1u6gc_         354 LDAVVSTRHEMLPEFYKTVSPALISRF---KEREENVKADVFHAYLSLLK  400 (1207)
T ss_dssp             HHHHHTTCCTTHHHHHTTTHHHHHSTT---SCSSSHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHHHH
Confidence            999877665422  2234666666555   34446667667666666653

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=5.6e-06  Score=82.11  Aligned_cols=319  Identities=12%  Similarity=0.090  Sum_probs=194.5

Q ss_pred             hHHHHHHHHhcCC--CHHHHHHHHHHHHHHHhhCChhhHHHHHh--cCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcc
Q 017249           25 ALIEELSDKLING--DLETKIEAARDIRKVVKKSSLKTRSEFAA--AGVVQPLVLMLVSP--NLDAIESSLLALLNLAVR   98 (375)
Q Consensus        25 ~~l~~Lv~~L~s~--~~~~~~~a~~~l~~l~~~~~~~~~~~~~~--~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~   98 (375)
                      +.++.|++.+.++  +...+..++.+|..++..-.+   ..+..  ...++.++..+.+.  +.+++..++.++.+....
T Consensus       128 eli~~L~~~l~~~~~~~~~~~~~l~~l~~i~~~~~~---~~~~~~~~~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~  204 (876)
T d1qgra_         128 ELIPQLVANVTNPNSTEHMKESTLEAIGYICQDIDP---EQLQDKSNEILTAIIQGMRKEEPSNNVKLAATNALLNSLEF  204 (876)
T ss_dssp             THHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHHSCH---HHHGGGHHHHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGG
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHCCH---HHHHHHHHHHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHH
Confidence            4688888888654  466787889999998865411   11111  24577888888654  578899999998887653


Q ss_pred             ChhhHH-HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCC-hhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249           99 NERNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPN-KPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus        99 ~~~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~-~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      ....-. .....-.++.+...+.+++++++..++.++..+...... -.........+.+...+.+.+..+...++..+.
T Consensus       205 ~~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~  284 (876)
T d1qgra_         205 TKANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQYMETYMGPALFAITIEAMKSDIDEVALQGIEFWS  284 (876)
T ss_dssp             CHHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGGGCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            322111 111112356677778888999999999999998765331 112223344556666777777777777776665


Q ss_pred             HhccCC-----------------CCchhhh----hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHH
Q 017249          177 YLSTCK-----------------ENSSPIL----DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIA  230 (375)
Q Consensus       177 ~L~~~~-----------------~~~~~i~----~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~  230 (375)
                      .++...                 .......    ....++.+...+....     ....+...+..++..++.....  .
T Consensus       285 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~  362 (876)
T d1qgra_         285 NVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTLTKQDENDDDDDWNPCKAAGVCLMLLATCCED--D  362 (876)
T ss_dssp             HHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHTTCCCSSCCTTCCCHHHHHHHHHHHHHHHHGG--G
T ss_pred             HHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHHHhcccccccccchHHHHHHHHHHHHHHHhhh--h
Confidence            554310                 0011111    1123333333333211     1112455666666666533211  1


Q ss_pred             HhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCC
Q 017249          231 ITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++  ...++.+...+.+.+...++.++..+..+.......... -.-...++.+...+.+.++.++..|.+++..+++..
T Consensus       363 ~~--~~~~~~i~~~l~~~~~~~r~~~~~~l~~~~~~~~~~~~~-~~~~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~  439 (876)
T d1qgra_         363 IV--PHVLPFIKEHIKNPDWRYRDAAVMAFGCILEGPEPSQLK-PLVIQAMPTLIELMKDPSVVVRDTAAWTVGRICELL  439 (876)
T ss_dssp             GH--HHHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHH-HHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHC
T ss_pred             hh--hhhHHHHHHhhccchHHHHHHHHHHHHhhhhhhhHHHHH-HHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHc
Confidence            12  123445556667778888889999999888765332222 122457888899999999999999999999998766


Q ss_pred             hhhhhhhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHHH
Q 017249          311 QEKRLSSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQR  351 (375)
Q Consensus       311 ~~~~~~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~~  351 (375)
                      +........++.++..+....+..++.+..+..++..+...
T Consensus       440 ~~~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~~l~~~  480 (876)
T d1qgra_         440 PEAAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFSSLAEA  480 (876)
T ss_dssp             GGGTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHH
T ss_pred             chhhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            54333333344444444333455688888999888888754

>d1u6gc_ a.118.1.2 (C:) Cullin-associated NEDD8-dissociated protein 1 (Tip120) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: HEAT repeat
domain: Cullin-associated NEDD8-dissociated protein 1 (Tip120)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=2e-07  Score=96.87  Aligned_cols=270  Identities=14%  Similarity=0.147  Sum_probs=175.4

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVK  105 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~  105 (375)
                      .+..|++.+++.|++.|..|+.-|.+...... ...+.-....+++.|++.|++++++||..|+.+|..++...++..  
T Consensus         4 ~~~~ll~k~~~~D~d~R~ma~~dl~~~l~~~~-~~~~~~~~~~i~~~ll~~L~D~~~~Vq~~A~k~l~~l~~~~~~~~--   80 (1207)
T d1u6gc_           4 HISNLLEKMTSSDKDFRFMATNDLMTELQKDS-IKLDDDSERKVVKMILKLLEDKNGEVQNLAVKCLGPLVSKVKEYQ--   80 (1207)
T ss_dssp             HHHHHHHHTTCSSHHHHHHHHHHHHHHTSSSC-CSCCTTHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHTTSCHHH--
T ss_pred             hHHHHHHhcCCCCHhHHHHHHHHHHHHHhhcc-cccChHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhCcHhh--
Confidence            46678888999999999999987777654331 000000011357899999999999999999999999986433221  


Q ss_pred             HHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC----Ch--hHHHhcCChHHHHHHhcc-CCHHHHHHHHHHHHHh
Q 017249          106 IATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP----NK--PAIAASGAAPLLVQILHS-GSVQGRVDAVTALHYL  178 (375)
Q Consensus       106 i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~----~~--~~i~~~~~l~~L~~lL~~-~~~~~~~~a~~~L~~L  178 (375)
                       . ...++.|+..+.+.+...+..+..+|..+...-.    ..  ........++.+...+.. .+..++..++.+|..+
T Consensus        81 -~-~~l~~~L~~~l~~~~~~~r~~~~~~L~~i~~~l~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~~~al~~l~~l  158 (1207)
T d1u6gc_          81 -V-ETIVDTLCTNMLSDKEQLRDISSIGLKTVIGELPPASSGSALAANVCKKITGRLTSAIAKQEDVSVQLEALDIMADM  158 (1207)
T ss_dssp             -H-HHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHCC-----CCTHHHHHHHHHHHHHHHHSCCSCHHHHHHHHHHHHHH
T ss_pred             -H-HHHHHHHHHHhcCCchhhhHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHH
Confidence             1 2346788888878888888888888877653211    11  111123344455555444 3577888999998888


Q ss_pred             ccCCC-CchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc-cCChHHHHHH
Q 017249          179 STCKE-NSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE-DGSLVSTQHA  256 (375)
Q Consensus       179 ~~~~~-~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~-~~~~~~~~~a  256 (375)
                      ..... ..... ....++.++..+.+.  ...++..|..+|..++..-..  ..+  ...++.++..+. +.+...+..+
T Consensus       159 ~~~~g~~l~~~-~~~il~~l~~~l~~~--~~~vR~~A~~~l~~l~~~~~~--~~~--~~~~~~ll~~l~~~~~~~~~~~~  231 (1207)
T d1u6gc_         159 LSRQGGLLVNF-HPSILTCLLPQLTSP--RLAVRKRTIIALGHLVMSCGN--IVF--VDLIEHLLSELSKNDSMSTTRTY  231 (1207)
T ss_dssp             HHHTCSSCTTT-HHHHHHHHGGGGGCS--SHHHHHHHHHHHHHHTTTC------C--TTHHHHHHHHHHHTCSSCSCTTH
T ss_pred             HHHhhHhhHHH-HHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHCCH--HHH--HHHHHHHHHHHccCCCHHHHHHH
Confidence            64322 11111 123455566666654  456888899999998764221  111  346777776664 3445556667


Q ss_pred             HHHHHHhcccCcHHHHHHHHH--cCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCCh
Q 017249          257 VGALLSLCQSCRDKYRQLILK--EGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQ  311 (375)
Q Consensus       257 ~~~L~~l~~~~~~~~~~~l~~--~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~  311 (375)
                      +.++..++...+..    +..  ..+++.+...+.+.++.+++.+..++..+....+
T Consensus       232 ~~~l~~l~~~~~~~----~~~~l~~i~~~l~~~l~~~~~~~r~~al~~l~~l~~~~~  284 (1207)
T d1u6gc_         232 IQCIAAISRQAGHR----IGEYLEKIIPLVVKFCNVDDDELREYCIQAFESFVRRCP  284 (1207)
T ss_dssp             HHHHHHHHHHSSGG----GTTSCTTHHHHHHHHHSSCCTTTHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHcchh----hHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHhCh
Confidence            77888777654321    222  4678889999999999999999999988876553

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.46  E-value=2.5e-05  Score=76.90  Aligned_cols=320  Identities=13%  Similarity=0.099  Sum_probs=181.8

Q ss_pred             hHHHHHHHHhcCC-CHHHHHHHHHHHHHHHhhCChhhHHHHHh-cCChHHHHHhhC--CCCHHHHHHHHHHHHHhhccCh
Q 017249           25 ALIEELSDKLING-DLETKIEAARDIRKVVKKSSLKTRSEFAA-AGVVQPLVLMLV--SPNLDAIESSLLALLNLAVRNE  100 (375)
Q Consensus        25 ~~l~~Lv~~L~s~-~~~~~~~a~~~l~~l~~~~~~~~~~~~~~-~g~v~~Lv~~L~--~~~~~~~~~a~~~L~~L~~~~~  100 (375)
                      +.++.|+..+.++ +...+..|+.+|..++....+.....+.. ...+..++..+.  ..+..++..++.++.++.....
T Consensus       134 eli~~L~~~~~s~~~~~~~~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~  213 (861)
T d2bpta1         134 ELMKIMVDNTGAEQPENVKRASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIK  213 (861)
T ss_dssp             HHHHHHHHHTSTTSCHHHHHHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCH
T ss_pred             HHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHh
Confidence            3566677776654 34566677788888775541111110000 122344444443  3468899999999998876433


Q ss_pred             hhHH-HHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC--ChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHH
Q 017249          101 RNKV-KIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP--NKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHY  177 (375)
Q Consensus       101 ~~r~-~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~--~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~  177 (375)
                      ..-. .......++.+...+.+++++++..+..++..++....  ....+ ..-....+....++.++.++..++..+..
T Consensus       214 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~l-~~~l~~l~~~~~~~~~~~v~~~~~~~l~~  292 (861)
T d2bpta1         214 NNMEREGERNYLMQVVCEATQAEDIEVQAAAFGCLCKIMSKYYTFMKPYM-EQALYALTIATMKSPNDKVASMTVEFWST  292 (861)
T ss_dssp             HHHTSHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHHHGGGCHHHH-HHTHHHHHHHHTTCSSHHHHHHHHHHHHH
T ss_pred             HhHHhhhhhhHHHHhHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            2211 11123346678888889999999999999999876422  11111 11122233445566778888888877776


Q ss_pred             hccCCC--------------Cchhhh---hcCCcHHHHHHhhhcc-----cchHHHHHHHHHHHHhhCChhhhHHHhhcc
Q 017249          178 LSTCKE--------------NSSPIL---DATAVPPLINLLKDCK-----KYSKFAEKATALLEILSSSEEGRIAITNSD  235 (375)
Q Consensus       178 L~~~~~--------------~~~~i~---~~g~i~~Lv~ll~~~~-----~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~  235 (375)
                      ++....              ....+.   -...++.+...+....     ........+..++..++.....  .++  .
T Consensus       293 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~l~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~--~~~--~  368 (861)
T d2bpta1         293 ICEEEIDIAYELAQFPQSPLQSYNFALSSIKDVVPNLLNLLTRQNEDPEDDDWNVSMSAGACLQLFAQNCGN--HIL--E  368 (861)
T ss_dssp             HHHHHHHHHHHHHHCTTCSCCCCCHHHHHHHHHHHHHHHHTTCCCCC-CCCCCHHHHHHHHHHHHHHHHHGG--GGH--H
T ss_pred             HHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhccccchhHHHHHHHHHHHHHHHhhcch--hhh--h
Confidence            653210              000000   0123444555554321     1123445555666555532211  111  1


Q ss_pred             CcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcCChhhhh
Q 017249          236 GGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDTPQEKRL  315 (375)
Q Consensus       236 g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~~~~~~~  315 (375)
                      -..+.+...+.+.+...+..++.++..++........... -...++.++..+.+.++.+|..+.+++..++..-+....
T Consensus       369 ~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~-l~~~l~~l~~~l~d~~~~vr~~a~~~l~~l~~~~~~~~~  447 (861)
T d2bpta1         369 PVLEFVEQNITADNWRNREAAVMAFGSIMDGPDKVQRTYY-VHQALPSILNLMNDQSLQVKETTAWCIGRIADSVAESID  447 (861)
T ss_dssp             HHHHHHHHHTTCSSHHHHHHHHHHHHHTSSSSCHHHHHHH-HHHHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHHGGGSC
T ss_pred             hhcchhhhhhhhHHHHHHHHHHHHHHHHHhhcchhhHHHH-HHHHHHHHHHHhcCcchhhhhHHHHHHHHHHHHhchhhh
Confidence            1233444555677788899999999999876643322222 245788899999999999999999999998876544333


Q ss_pred             hhhhHHHHHHHHhhcCCChHHHHHHHHHHHHHHHH
Q 017249          316 SSSVLEKIVYDIAARVDGADKAAETAKRLLQDMVQ  350 (375)
Q Consensus       316 ~~g~~~~l~~~l~~~~~g~~~~~~~a~~~l~~l~~  350 (375)
                      ....++.++..+....+..++....+..++..+..
T Consensus       448 ~~~~~~~ll~~l~~~~~~~~~~~~~~~~~~~~l~~  482 (861)
T d2bpta1         448 PQQHLPGVVQACLIGLQDHPKVATNCSWTIINLVE  482 (861)
T ss_dssp             TTTTHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred             hHHhhhhhhHHHHhccccChHHHHHHHHHHHHHHH
Confidence            33333333333332234447777777776666654

>d1ho8a_ a.118.1.9 (A:) Regulatory subunit H of the V-type ATPase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Regulatory subunit H of the V-type ATPase
domain: Regulatory subunit H of the V-type ATPase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=5.2e-05  Score=68.70  Aligned_cols=318  Identities=11%  Similarity=0.040  Sum_probs=203.6

Q ss_pred             hHHHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChh---hHHHHHhcC--ChHHHHHhhCCCCHHHHHHHHHHHHHhhcc
Q 017249           25 ALIEELSDKLI-NGDLETKIEAARDIRKVVKKSSLK---TRSEFAAAG--VVQPLVLMLVSPNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        25 ~~l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~---~~~~~~~~g--~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~   98 (375)
                      ..+..++.+|. .+.+++....+..+..+...+ +.   ..+.+.+..  .-+++...+.+++.-....+...+..++..
T Consensus        74 ~~~~~~l~lL~~~sk~d~vqyvL~Li~dLL~~d-~~~~~~~~~~~~~~~~~~~~f~~~l~~~d~~~~~~s~~i~~ll~~~  152 (477)
T d1ho8a_          74 KTLIPLIHLLSTSDNEDCKKSVQNLIAELLSSD-KYGDDTVKFFQEDPKQLEQLFDVSLKGDFQTVLISGFNVVSLLVQN  152 (477)
T ss_dssp             TTHHHHHHHHHSCCCHHHHHHHHHHHHHHHHCS-SSSHHHHHHHHHCTTHHHHHHHHCSCSSHHHHHHHHHHHHHHHTST
T ss_pred             HHHHHHHHHHhhcCcHHHHHHHHHHHHHHHhcC-cchhHHHHHHhhCccchhHHHHHhccCchhHHHHHHHHHHHHHHhc
Confidence            45778888887 577888888888888888776 32   222233322  234566667777777788888888888765


Q ss_pred             ChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHH--hcCChHHHHHHhccC------------
Q 017249           99 NERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIA--ASGAAPLLVQILHSG------------  163 (375)
Q Consensus        99 ~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~--~~~~l~~L~~lL~~~------------  163 (375)
                      ........-. ......+-.+..+.+.+.+..++.++..+...++.|..+-  ....++.|+++|+..            
T Consensus       153 ~~~~~~~~e~l~~~~~~l~~l~~~~~~~~~~i~v~~lq~llr~~~~R~~fw~~~~~~~~~l~~il~~a~~~~~~~~~~~~  232 (477)
T d1ho8a_         153 GLHNVKLVEKLLKNNNLINILQNIEQMDTCYVCIRLLQELAVIPEYRDVIWLHEKKFMPTLFKILQRATDSQLATRIVAT  232 (477)
T ss_dssp             TTCCHHHHHHHHHCHHHHHHHHCTTCHHHHHHHHHHHHHHHTSHHHHHHHHTTHHHHHHHHHHHHHHHHC----------
T ss_pred             cccccchHHHHHHhhHHHHHhhcccccchHHHHHHHHHHHhcCccHHHHHHHcccchHHHHHHHHHHHhcccccchhhcc
Confidence            4433322111 1123333344466688888889999999988887777764  345677777776431            


Q ss_pred             -----CHHHHHHHHHHHHHhccCCCCchhhhhc--CCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChh--h----hHH
Q 017249          164 -----SVQGRVDAVTALHYLSTCKENSSPILDA--TAVPPLINLLKDCKKYSKFAEKATALLEILSSSEE--G----RIA  230 (375)
Q Consensus       164 -----~~~~~~~a~~~L~~L~~~~~~~~~i~~~--g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~--~----~~~  230 (375)
                           ....++.++-++|-|+..++....+...  +.++.|+++++... .+++.+-++.+|.|++..+.  +    ...
T Consensus       233 ~~~~~~~Ql~Y~~ll~lWlLSF~~~~~~~l~~~~~~~i~~l~~i~~~s~-KEKvvRv~l~~l~Nll~~~~~~~~~~~~~~  311 (477)
T d1ho8a_         233 NSNHLGIQLQYHSLLLIWLLTFNPVFANELVQKYLSDFLDLLKLVKITI-KEKVSRLCISIILQCCSTRVKQHKKVIKQL  311 (477)
T ss_dssp             ---CCHHHHHHHHHHHHHHHTTSHHHHHHHHTTSHHHHHHHHHHHHHCC-SHHHHHHHHHHHHHTTSSSSTTHHHHHHHH
T ss_pred             cCCCccHHHHHHHHHHHHHHHcCHHHHHHHHHhhhHHHHHHHHHHHhhh-HHHHHHHHHHHHHHHhhhhhhhhhhHHHHH
Confidence                 2467999999999999987777777665  45889999998765 55778889999999986422  1    223


Q ss_pred             HhhccCcHHHHHHHhcc---CChHHHHHHHHHHHH--------hcc--------------cCcHHHH-HHHHHc------
Q 017249          231 ITNSDGGILTLVETVED---GSLVSTQHAVGALLS--------LCQ--------------SCRDKYR-QLILKE------  278 (375)
Q Consensus       231 ~~~~~g~v~~Lv~lL~~---~~~~~~~~a~~~L~~--------l~~--------------~~~~~~~-~~l~~~------  278 (375)
                      ++ ..++. .++..|..   .++.+.+. +..|..        ++.              .+ |-.+ +.++.+      
T Consensus       312 ~v-~~~~l-~~l~~L~~r~~~Dedl~ed-l~~L~~~L~~~~k~lTsfd~Y~~Ev~Sg~L~WS-P~H~se~FW~EN~~kf~  387 (477)
T d1ho8a_         312 LL-LGNAL-PTVQSLSERKYSDEELRQD-ISNLKEILENEYQELTSFDEYVAELDSKLLCWS-PPHVDNGFWSDNIDEFK  387 (477)
T ss_dssp             HH-HHCHH-HHHHHHHSSCCSSHHHHHH-HHHHHHHHHHHHHTCCHHHHHHHHHHHTCCCCC-GGGGCHHHHHHHSGGGS
T ss_pred             HH-Hcchh-HHHHHHhcCCCCCHHHHHH-HHHHHHHHHHHHHhcCcHHHHHHHHhcCCCCCC-CCcCChhHHHHHHHhhc
Confidence            33 23444 44555543   23433221 112211        111              11 1111 233322      


Q ss_pred             ----CChHHHHHHhh----------hCCHHHHHHHHHHHHHhhcCChh---hhhhhhhHHHHHHHHhhcCCChHHHHHHH
Q 017249          279 ----GAIPGLLRLTV----------EGTFEAQERARTLLDLLRDTPQE---KRLSSSVLEKIVYDIAARVDGADKAAETA  341 (375)
Q Consensus       279 ----g~v~~L~~ll~----------~~~~~~~~~A~~~L~~l~~~~~~---~~~~~g~~~~l~~~l~~~~~g~~~~~~~a  341 (375)
                          .++..|++++.          +.||.+.--|+.=+..++++-|.   -+-+.|+=..++..|.   ...+..+..|
T Consensus       388 e~~~~llk~L~~lL~~~~~~~~~~~s~D~~~lAVAc~DiGefvr~~P~gr~il~~lg~K~~vM~Lm~---h~d~~Vr~eA  464 (477)
T d1ho8a_         388 KDNYKIFRQLIELLQAKVRNGDVNAKQEKIIIQVALNDITHVVELLPESIDVLDKTGGKADIMELLN---HSDSRVKYEA  464 (477)
T ss_dssp             SGGGHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHSHHHHHHHHTS---CSSHHHHHHH
T ss_pred             ccchHHHHHHHHHHhhcccccccccCCCcceeehhhhhHHHHHHHCcchhHHHHHcCcHHHHHHHhc---CCCHHHHHHH
Confidence                26788888886          34667777777777777766644   3445777777877663   4459999999


Q ss_pred             HHHHHHHHHH
Q 017249          342 KRLLQDMVQR  351 (375)
Q Consensus       342 ~~~l~~l~~~  351 (375)
                      -.+++.+..+
T Consensus       465 L~avQklm~~  474 (477)
T d1ho8a_         465 LKATQAIIGY  474 (477)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988754

>d1ibrb_ a.118.1.1 (B:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=3.3e-06  Score=77.11  Aligned_cols=253  Identities=13%  Similarity=0.126  Sum_probs=156.5

Q ss_pred             hHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           25 ALIEELSDKLIN--GDLETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        25 ~~l~~Lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ..++.++..+.+  .+.+++..|+.++..+.... ..... ........+.+...+.+++++++..++.+|..++...+.
T Consensus       171 ~il~~~~~~l~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~i~~~~~~  249 (458)
T d1ibrb_         171 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  249 (458)
T ss_dssp             HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHTTTT-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHCGG
T ss_pred             HHHHHHHHHhcccccCHHHHHHHHHHHHHHHHhh-hhhhhhHHHHHHhHhhHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            356777777764  45788999999999888655 22211 122223566778888999999999999999999865543


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-----------------Ch----hHHHhcCChHHHHHHh
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-----------------NK----PAIAASGAAPLLVQIL  160 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-----------------~~----~~i~~~~~l~~L~~lL  160 (375)
                      .-.........+.+...+.+.+++++..++..+..++....                 ..    ........++.+.+.+
T Consensus       250 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~a~~~l~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  329 (458)
T d1ibrb_         250 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  329 (458)
T ss_dssp             GCTTTTTTTHHHHHHHHHHCSSHHHHHHHHHHHHHHHHHHHHHHHHHCCTTCSSSCSSCCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHhhhHHHHHHHHHHHHHHHHHhhhHHhhh
Confidence            22111222223445566677788898888888877753210                 00    0001122334444444


Q ss_pred             cc-------CCHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh--hhhHHH
Q 017249          161 HS-------GSVQGRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE--EGRIAI  231 (375)
Q Consensus       161 ~~-------~~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~--~~~~~~  231 (375)
                      ..       .+..++..+..++..++.....  .+. ...++.+...+.++  +..+++.++.+|+.++...  ...+..
T Consensus       330 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~~--~~~-~~l~~~i~~~l~s~--~~~~r~aal~~l~~i~~~~~~~~~~~~  404 (458)
T d1ibrb_         330 TKQDENDDDDDWNPCKAAGVCLMLLATCCED--DIV-PHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQLKPL  404 (458)
T ss_dssp             TCCCSSCCTTCCSHHHHHHHHHHHHHHHTTT--THH-HHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCTTTTCTT
T ss_pred             hcchhhhccccccHHHHHHHHHHHHHHhccH--hhh-hHHHHHHHHHhcCC--CHHHHHHHHHHHHHHHHhcCHhHHHHH
Confidence            32       1235677788888887743221  111 12445555666554  4467888999999988542  322333


Q ss_pred             hhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh
Q 017249          232 TNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV  289 (375)
Q Consensus       232 ~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~  289 (375)
                      +  ...++.++..+.++++.+|..|+++|..++..-.+.    ......+++++..+-
T Consensus       405 l--~~i~~~l~~~l~d~~~~VR~~a~~~l~~i~~~~~~~----~~~~~~l~~ll~~ll  456 (458)
T d1ibrb_         405 V--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPEA----AINDVYLAPLLQCLI  456 (458)
T ss_dssp             T--TTHHHHHHHGGGCSCHHHHHHHHHHHHHHHHHGGGG----CCSTTTHHHHHHHHH
T ss_pred             H--HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcc----cchhhHHHHHHHHHh
Confidence            3  468899999999999999999999999987543110    111334666666443

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.35  E-value=2.3e-08  Score=74.17  Aligned_cols=108  Identities=18%  Similarity=0.235  Sum_probs=85.0

Q ss_pred             cCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHH
Q 017249           35 INGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPP  114 (375)
Q Consensus        35 ~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~  114 (375)
                      +++++.++..|++.|..+.             ...++.|++.|.++++.++..|+++|+++..  +         +.++.
T Consensus         2 ~D~~~~VR~~A~~aL~~~~-------------~~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~--~---------~~~~~   57 (111)
T d1te4a_           2 ADENKWVRRDVSTALSRMG-------------DEAFEPLLESLSNEDWRIRGAAAWIIGNFQD--E---------RAVEP   57 (111)
T ss_dssp             CSSCCCSSSSCCSSTTSCS-------------STTHHHHHHGGGCSCHHHHHHHHHHHGGGCS--H---------HHHHH
T ss_pred             CCcCHHHHHHHHHHHHHhC-------------HHHHHHHHHHHcCCCHHHHHHHHHHHHhcch--h---------hhHHH
Confidence            3455555666666554431             1357889999999999999999999988753  1         24789


Q ss_pred             HHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHH
Q 017249          115 LVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALH  176 (375)
Q Consensus       115 Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~  176 (375)
                      |+.+|+++++.+|..++.+|..+.          ....++.|..+++++++.++..|+.+|.
T Consensus        58 L~~~l~d~~~~VR~~a~~aL~~i~----------~~~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          58 LIKLLEDDSGFVRSGAARSLEQIG----------GERVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             HHHHHHHCCTHHHHHHHHHHHHHC----------SHHHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             HHhhhccchhHHHHHHHHHHHHhC----------ccchHHHHHHHHcCCCHHHHHHHHHHHH
Confidence            999999999999999999998873          2456888999999999999999988764

>d2bpta1 a.118.1.1 (A:1-861) Importin beta {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.28  E-value=2.5e-05  Score=76.98  Aligned_cols=269  Identities=9%  Similarity=0.075  Sum_probs=168.7

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhccChhhH
Q 017249           26 LIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVRNERNK  103 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~~~~~r  103 (375)
                      ..+.|-..+.++|++++..|-..|.++...+ .        .+.+..|.+.+.++  +..+|..|+-.|.|.........
T Consensus         6 ~~~~L~~~~~s~d~~~r~~Ae~~L~~~~~~~-~--------~~~~~~l~~il~~~~~~~~~r~~A~i~lkn~i~~~~~~~   76 (861)
T d2bpta1           6 FAQLLENSILSPDQNIRLTSETQLKKLSNDN-F--------LQFAGLSSQVLIDENTKLEGRILAALTLKNELVSKDSVK   76 (861)
T ss_dssp             HHHHHHHHHHCSSHHHHHHHHHHHHHHHHHC-H--------HHHHHHHHHHHTCTTSCHHHHHHHHHHHHTTTCCSSHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcC-c--------hHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhhcccchh
Confidence            3444445567999999999999999887665 1        13466778888654  57888889888888764322111


Q ss_pred             HH-----HH-------HcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC--CChhHHHhcCChHHHHHHhccCC-HHHH
Q 017249          104 VK-----IA-------TAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA--PNKPAIAASGAAPLLVQILHSGS-VQGR  168 (375)
Q Consensus       104 ~~-----i~-------~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~--~~~~~i~~~~~l~~L~~lL~~~~-~~~~  168 (375)
                      ..     ..       .......++..+.++++.++..++.++..++..+  .++    .+..++.|+..+.+.+ ...+
T Consensus        77 ~~~~~~~~~~~i~~~~~~~ik~~ll~~l~~~~~~vr~~~a~~i~~i~~~~~p~~~----wpeli~~L~~~~~s~~~~~~~  152 (861)
T d2bpta1          77 TQQFAQRWITQVSPEAKNQIKTNALTALVSIEPRIANAAAQLIAAIADIELPHGA----WPELMKIMVDNTGAEQPENVK  152 (861)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHGGGTC----CHHHHHHHHHHTSTTSCHHHH
T ss_pred             hhhHHhhhHhcCCHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhCCcCc----hHHHHHHHHHHhcCCCcHHHH
Confidence            00     00       0112346777788889999999999999887532  111    2345677788877665 4567


Q ss_pred             HHHHHHHHHhccCCC-Cchhhhh--cCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCC-hhhhH-HHhhccCcHHHHHH
Q 017249          169 VDAVTALHYLSTCKE-NSSPILD--ATAVPPLINLLKDCKKYSKFAEKATALLEILSSS-EEGRI-AITNSDGGILTLVE  243 (375)
Q Consensus       169 ~~a~~~L~~L~~~~~-~~~~i~~--~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~-~~~~~-~~~~~~g~v~~Lv~  243 (375)
                      ..++.+|..++..-+ ....+..  ...+..++..+.+......++..+..++.++... +.+-. ... ....++.+..
T Consensus       153 ~~al~~l~~i~e~~~~~~~~~~~~~~~il~~i~~~~~~~~~~~~v~~~a~~~l~~~~~~~~~~~~~~~~-~~~~~~~l~~  231 (861)
T d2bpta1         153 RASLLALGYMCESADPQSQALVSSSNNILIAIVQGAQSTETSKAVRLAALNALADSLIFIKNNMEREGE-RNYLMQVVCE  231 (861)
T ss_dssp             HHHHHHHHHHHHTSSTTSSTTGGGHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHGGGCHHHHTSHHH-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHhHhHHhhhh-hhHHHHhHHH
Confidence            788899998875422 2222221  1233344444444444567888888888887653 22211 111 1345667778


Q ss_pred             HhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhCCHHHHHHHHHHHHHhhcC
Q 017249          244 TVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEGTFEAQERARTLLDLLRDT  309 (375)
Q Consensus       244 lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~~~~~~~~A~~~L~~l~~~  309 (375)
                      .+.++++.++..++.++..++.......... ...-+...+.....+.++.++..+...+..+++.
T Consensus       232 ~~~~~~~~~~~~~~~~l~~i~~~~~~~~~~~-l~~~l~~l~~~~~~~~~~~v~~~~~~~l~~l~~~  296 (861)
T d2bpta1         232 ATQAEDIEVQAAAFGCLCKIMSKYYTFMKPY-MEQALYALTIATMKSPNDKVASMTVEFWSTICEE  296 (861)
T ss_dssp             HHTCSCHHHHHHHHHHHHHHHHHHGGGCHHH-HHHTHHHHHHHHTTCSSHHHHHHHHHHHHHHHHH
T ss_pred             HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence            8888999999999999999876542211111 1111222334455677899999998888777543

>d1qgra_ a.118.1.1 (A:) Importin beta {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Importin beta
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=0.00015  Score=71.54  Aligned_cols=268  Identities=13%  Similarity=0.117  Sum_probs=162.7

Q ss_pred             hHHHHHHHHhcC--CCHHHHHHHHHHHHHHHhhCChhhHH-HHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChh
Q 017249           25 ALIEELSDKLIN--GDLETKIEAARDIRKVVKKSSLKTRS-EFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNER  101 (375)
Q Consensus        25 ~~l~~Lv~~L~s--~~~~~~~~a~~~l~~l~~~~~~~~~~-~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~  101 (375)
                      ..++.++..+.+  .+.+++..|+.++.+..... ..... .....-.++.+...+.+++++++..++.+|..+....++
T Consensus       172 ~il~~i~~~l~~~~~~~~v~~~a~~~l~~~~~~~-~~~~~~~~~~~~i~~~l~~~~~~~~~~v~~~~~~~l~~l~~~~~~  250 (876)
T d1qgra_         172 EILTAIIQGMRKEEPSNNVKLAATNALLNSLEFT-KANFDKESERHFIMQVVCEATQCPDTRVRVAALQNLVKIMSLYYQ  250 (876)
T ss_dssp             HHHHHHHHHHSTTCSCHHHHHHHHHHHHHHGGGC-HHHHTSHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHSGG
T ss_pred             HHHHHHHHHHcCcCccHHHHHHHHHHHHHHHHHh-hhhhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhHH
Confidence            456777777764  35778889999998887655 22111 111122466777888899999999999999999876555


Q ss_pred             hHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-------------------Ch--hHHHhcCChHHHHHHh
Q 017249          102 NKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-------------------NK--PAIAASGAAPLLVQIL  160 (375)
Q Consensus       102 ~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-------------------~~--~~i~~~~~l~~L~~lL  160 (375)
                      .-.........+.+...+.+..++++..+...+..++....                   ..  ........++.+...+
T Consensus       251 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~  330 (876)
T d1qgra_         251 YMETYMGPALFAITIEAMKSDIDEVALQGIEFWSNVCDEEMDLAIEASEAAEQGRPPEHTSKFYAKGALQYLVPILTQTL  330 (876)
T ss_dssp             GCHHHHTTTHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCCSSCCCCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhhHHHHHHHHHHHHHHHHHHhhHHHH
Confidence            44343444455566667777788888887776666553110                   00  0001122333444444


Q ss_pred             ccC-------CHHHHHHHHHHHHHhccCCCCchhhhhcCCcHHHH----HHhhhcccchHHHHHHHHHHHHhhCC--hhh
Q 017249          161 HSG-------SVQGRVDAVTALHYLSTCKENSSPILDATAVPPLI----NLLKDCKKYSKFAEKATALLEILSSS--EEG  227 (375)
Q Consensus       161 ~~~-------~~~~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv----~ll~~~~~~~~~~~~a~~~L~~l~~~--~~~  227 (375)
                      ...       +..++..+..++..++....       ..+++.++    ..+.+.  ....++.+...+..+...  ...
T Consensus       331 ~~~~~~~~~~~~~~~~~a~~~l~~l~~~~~-------~~~~~~~~~~i~~~l~~~--~~~~r~~~~~~l~~~~~~~~~~~  401 (876)
T d1qgra_         331 TKQDENDDDDDWNPCKAAGVCLMLLATCCE-------DDIVPHVLPFIKEHIKNP--DWRYRDAAVMAFGCILEGPEPSQ  401 (876)
T ss_dssp             TCCCSSCCTTCCCHHHHHHHHHHHHHHHHG-------GGGHHHHHHHHHHHTTCS--SHHHHHHHHHHHHHTSSSSCHHH
T ss_pred             HhcccccccccchHHHHHHHHHHHHHHHhh-------hhhhhhhHHHHHHhhccc--hHHHHHHHHHHHHhhhhhhhHHH
Confidence            322       22356667777766654311       12233443    333333  335667777778777653  233


Q ss_pred             hHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh---hCCHHHHHHHHHHHH
Q 017249          228 RIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV---EGTFEAQERARTLLD  304 (375)
Q Consensus       228 ~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~---~~~~~~~~~A~~~L~  304 (375)
                      .....  ...++.++..+.++++.++..+++++..++.....    .......++.++..+.   +.++.++..+++++.
T Consensus       402 ~~~~~--~~~~~~l~~~l~d~~~~vr~~a~~~l~~~~~~~~~----~~~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~l~  475 (876)
T d1qgra_         402 LKPLV--IQAMPTLIELMKDPSVVVRDTAAWTVGRICELLPE----AAINDVYLAPLLQCLIEGLSAEPRVASNVCWAFS  475 (876)
T ss_dssp             HHHHH--HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHCGG----GTSSTTTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHH--HHHHHHHHHhhcCCccHHHHHHHHHHHHHHHHcch----hhhhHHHhhhHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            33333  35788899999999999999999999999865421    1112233444443222   457899999999998


Q ss_pred             Hhhc
Q 017249          305 LLRD  308 (375)
Q Consensus       305 ~l~~  308 (375)
                      .+..
T Consensus       476 ~l~~  479 (876)
T d1qgra_         476 SLAE  479 (876)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8864

>d1te4a_ a.118.1.16 (A:) MTH187 {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: PBS lyase HEAT-like repeat
domain: MTH187
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.94  E-value=6.4e-06  Score=60.33  Aligned_cols=88  Identities=20%  Similarity=0.176  Sum_probs=73.1

Q ss_pred             hHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhHH
Q 017249           25 ALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNKV  104 (375)
Q Consensus        25 ~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~  104 (375)
                      ..++.|+..|.++++.++..|+++|.++...            +.++.|+++|+++++.++..++++|+.+..  +    
T Consensus        22 ~~~~~L~~~l~d~~~~vR~~a~~~L~~~~~~------------~~~~~L~~~l~d~~~~VR~~a~~aL~~i~~--~----   83 (111)
T d1te4a_          22 EAFEPLLESLSNEDWRIRGAAAWIIGNFQDE------------RAVEPLIKLLEDDSGFVRSGAARSLEQIGG--E----   83 (111)
T ss_dssp             TTHHHHHHGGGCSCHHHHHHHHHHHGGGCSH------------HHHHHHHHHHHHCCTHHHHHHHHHHHHHCS--H----
T ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHhcchh------------hhHHHHHhhhccchhHHHHHHHHHHHHhCc--c----
Confidence            4678899999999999999999998765322            247889999999999999999999998753  2    


Q ss_pred             HHHHcCChHHHHHhhcCCChHHHHHHHHHHH
Q 017249          105 KIATAGAIPPLVELLKFQNGTLRELAAAAIL  135 (375)
Q Consensus       105 ~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~  135 (375)
                           +.++.|..+++++++.++..|+.+|.
T Consensus        84 -----~~~~~L~~ll~d~~~~vr~~A~~aL~  109 (111)
T d1te4a_          84 -----RVRAAMEKLAETGTGFARKVAVNYLE  109 (111)
T ss_dssp             -----HHHHHHHHHTTSCCTHHHHHHHHHGG
T ss_pred             -----chHHHHHHHHcCCCHHHHHHHHHHHH
Confidence                 24778889999999999999887763

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.92  E-value=0.012  Score=49.83  Aligned_cols=203  Identities=14%  Similarity=0.104  Sum_probs=152.2

Q ss_pred             HHHHHhhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChh----hHHHHHhc-CChHHHHHhhCCCCHHHHHHHHHH
Q 017249           17 EAWNQRKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLK----TRSEFAAA-GVVQPLVLMLVSPNLDAIESSLLA   91 (375)
Q Consensus        17 ~~~~~~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~----~~~~~~~~-g~v~~Lv~~L~~~~~~~~~~a~~~   91 (375)
                      -...+...+.+..|+..|..=+.+.+..++.++.++.... ..    ..+++... ..+..|+.....+  ++-..+-..
T Consensus        61 L~~e~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~-~~~~~p~v~Yl~~~~eil~~L~~gye~~--eiAl~~G~m  137 (330)
T d1upka_          61 LAQELYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQ-IGTRTPTVEYICTQQNILFMLLKGYESP--EIALNCGIM  137 (330)
T ss_dssp             HHHHHHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCC-BTTBCHHHHHHHTCTHHHHHHHHGGGST--TTHHHHHHH
T ss_pred             HHHHHHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcC-CCCCCccHHHHHcCHHHHHHHHhhcCCc--chhhhhhHH
Confidence            3446777899999999999999999999999999998765 32    33555543 4666666666544  555566667


Q ss_pred             HHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCC-ChhHHHh---cCChHHHHHHhccCCHHH
Q 017249           92 LLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAP-NKPAIAA---SGAAPLLVQILHSGSVQG  167 (375)
Q Consensus        92 L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~-~~~~i~~---~~~l~~L~~lL~~~~~~~  167 (375)
                      |+.+.+ .+.....+.....+..+.+.+..++.++...|..++..+....+ ....+..   ......+-++|.+++.-+
T Consensus       138 LREcik-~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NYVt  216 (330)
T d1upka_         138 LRECIR-HEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENYVT  216 (330)
T ss_dssp             HHHHHT-SHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHh-hHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCchHH
Confidence            777777 67777888888889999999999999999999999988765432 1122222   235666778899999999


Q ss_pred             HHHHHHHHHHhccCCCCchhhh----hcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCCh
Q 017249          168 RVDAVTALHYLSTCKENSSPIL----DATAVPPLINLLKDCKKYSKFAEKATALLEILSSSE  225 (375)
Q Consensus       168 ~~~a~~~L~~L~~~~~~~~~i~----~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~  225 (375)
                      +..++..|..+-.+..|...+.    +..-+..++.+|++.  +..++-.|-.++.-+..+|
T Consensus       217 rRqSlKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~--sk~Iq~EAFhVFKvFVANp  276 (330)
T d1upka_         217 KRQSLKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDK--SRNIQFEAFHVFKVFVANP  276 (330)
T ss_dssp             HHHHHHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCS--CHHHHHHHHHHHHHHHHCS
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCc--hhhHHHHhhhHhhhhhcCC
Confidence            9999999999988776665543    345677888888876  4567888888888777554

>d1upka_ a.118.1.15 (A:) Mo25 protein {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Mo25 protein
domain: Mo25 protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.045  Score=46.21  Aligned_cols=221  Identities=14%  Similarity=0.074  Sum_probs=155.3

Q ss_pred             HHhcCChHHHHHhhCCCCHHHHHHHHHHHHHhhccChhhH----HHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhh
Q 017249           64 FAAAGVVQPLVLMLVSPNLDAIESSLLALLNLAVRNERNK----VKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLS  138 (375)
Q Consensus        64 ~~~~g~v~~Lv~~L~~~~~~~~~~a~~~L~~L~~~~~~~r----~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls  138 (375)
                      +...+.+..|+..|..=+.+.++.+..+..++-+.....|    +.+.. ...+..|+.-.+  ++++--.+-..|....
T Consensus        65 ~~~~d~l~~Li~~L~~L~fE~RKD~~~if~~llR~~~~~~~p~v~Yl~~~~eil~~L~~gye--~~eiAl~~G~mLREci  142 (330)
T d1upka_          65 LYNSGLLSTLVADLQLIDFEGKKDVAQIFNNILRRQIGTRTPTVEYICTQQNILFMLLKGYE--SPEIALNCGIMLRECI  142 (330)
T ss_dssp             HHHHSHHHHHHHTGGGSCHHHHHHHHHHHHHHHTCCBTTBCHHHHHHHTCTHHHHHHHHGGG--STTTHHHHHHHHHHHH
T ss_pred             HHHhChHHHHHHhCCCCCCchhhhHHHHHHHHhhcCCCCCCccHHHHHcCHHHHHHHHhhcC--CcchhhhhhHHHHHHH
Confidence            3445889999999998899999999999999987654444    23333 223333333333  4455455666677777


Q ss_pred             ccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHHHHhc-cCCCCchhhhhc---CCcHHHHHHhhhcccchHHHHHH
Q 017249          139 AAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTALHYLS-TCKENSSPILDA---TAVPPLINLLKDCKKYSKFAEKA  214 (375)
Q Consensus       139 ~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L~~L~-~~~~~~~~i~~~---g~i~~Lv~ll~~~~~~~~~~~~a  214 (375)
                      .++.-...+.....+..+.+.+..++-++...|..++..|- .+..........   ..+.....++.+++.  .++..+
T Consensus       143 k~e~lak~iL~s~~f~~fF~yv~~~~FdiasDAf~TfkelLt~hk~~~aefl~~Nyd~Ff~~~~~LL~s~NY--VtrRqS  220 (330)
T d1upka_         143 RHEPLAKIILWSEQFYDFFRYVEMSTFDIASDAFATFKDLLTRHKLLSAEFLEQHYDRFFSEYEKLLHSENY--VTKRQS  220 (330)
T ss_dssp             TSHHHHHHHHHSGGGGHHHHHTTCSSHHHHHHHHHHHHHHHHSSHHHHHHHHHHTHHHHHHHHHHHTTCSSH--HHHHHH
T ss_pred             hhHHHHHHHHccHHHHHHHHHHcCCchHHHHHHHHHHHHHHHhCHHHHHHHHHHhHHHHHHHHHHHhcCCch--HHHHHH
Confidence            77666666677777888889999999999999999999765 444434444432   456677788877643  577889


Q ss_pred             HHHHHHhhCChhhhHHHhh---ccCcHHHHHHHhccCChHHHHHHHHHHHHhcccCc--HHHHHHHHHc--CChHHHHHH
Q 017249          215 TALLEILSSSEEGRIAITN---SDGGILTLVETVEDGSLVSTQHAVGALLSLCQSCR--DKYRQLILKE--GAIPGLLRL  287 (375)
Q Consensus       215 ~~~L~~l~~~~~~~~~~~~---~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~--~~~~~~l~~~--g~v~~L~~l  287 (375)
                      +..|+.+-.+..+...+..   +..-+..++.+|++.+..++-.|..++--+..+.+  +.....+...  ..+.-|-.+
T Consensus       221 lKLLgelLldr~N~~vm~~Yvs~~~nLkl~M~LLrd~sk~Iq~EAFhVFKvFVANpnKp~~I~~IL~~Nr~kLl~fl~~f  300 (330)
T d1upka_         221 LKLLGELLLDRHNFTIMTKYISKPENLKLMMNLLRDKSRNIQFEAFHVFKVFVANPNKTQPILDILLKNQAKLIEFLSKF  300 (330)
T ss_dssp             HHHHHHHHHSGGGHHHHHHHTTCHHHHHHHHHHTTCSCHHHHHHHHHHHHHHHHCSSCCHHHHHHHHHTHHHHHHHHHHT
T ss_pred             HHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHhcCchhhHHHHhhhHhhhhhcCCCCCHHHHHHHHHhHHHHHHHHHhC
Confidence            9999999988887776542   34457788899999999999999999998888754  3445555443  244444444


Q ss_pred             h
Q 017249          288 T  288 (375)
Q Consensus       288 l  288 (375)
                      .
T Consensus       301 ~  301 (330)
T d1upka_         301 Q  301 (330)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.66  E-value=0.0017  Score=53.53  Aligned_cols=40  Identities=15%  Similarity=0.191  Sum_probs=24.0

Q ss_pred             HhhCCCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHH
Q 017249           75 LMLVSPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAA  132 (375)
Q Consensus        75 ~~L~~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~  132 (375)
                      .+|.++..+++..|++                  .-.++.|..+++.+++.+|..++.
T Consensus        49 ~~l~~p~~e~Ra~Aa~------------------~a~~~~L~~Ll~D~d~~VR~~AA~   88 (233)
T d1lrva_          49 QYLADPFWERRAIAVR------------------YSPVEALTPLIRDSDEVVRRAVAY   88 (233)
T ss_dssp             GGTTCSSHHHHHHHHT------------------TSCGGGGGGGTTCSSHHHHHHHHT
T ss_pred             HHhcCCcHHHHHHHHh------------------cCCHHHHHHHhcCCCHHHHHHHHH
Confidence            3566666676655543                  223456667777777777766654

>d1lrva_ a.118.1.5 (A:) Leucine-rich repeat variant {Azotobacter vinelandii [TaxId: 354]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Leucine-rich repeat variant
domain: Leucine-rich repeat variant
species: Azotobacter vinelandii [TaxId: 354]

Probab=96.22  E-value=0.003  Score=51.93  Aligned_cols=108  Identities=12%  Similarity=0.073  Sum_probs=66.8

Q ss_pred             HHHHHHHHhcCCCHHHHHHHHHH-----HHHHHhhCChhhHHHHHhcCChHHHHHhhCCCCHHHHHHHHHH-----HHHh
Q 017249           26 LIEELSDKLINGDLETKIEAARD-----IRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSPNLDAIESSLLA-----LLNL   95 (375)
Q Consensus        26 ~l~~Lv~~L~s~~~~~~~~a~~~-----l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~~~~~~~~a~~~-----L~~L   95 (375)
                      .+..|+.+++.++++++..|+..     |..+..+.+..-|......-..+.|..++.+++..++..++..     |..+
T Consensus        67 ~~~~L~~Ll~D~d~~VR~~AA~~Lp~~~L~~L~~D~d~~VR~~aa~~l~~~~L~~Ll~D~d~~VR~~aa~~~~~~~L~~L  146 (233)
T d1lrva_          67 PVEALTPLIRDSDEVVRRAVAYRLPREQLSALMFDEDREVRITVADRLPLEQLEQMAADRDYLVRAYVVQRIPPGRLFRF  146 (233)
T ss_dssp             CGGGGGGGTTCSSHHHHHHHHTTSCSGGGGGTTTCSCHHHHHHHHHHSCTGGGGGGTTCSSHHHHHHHHHHSCGGGGGGT
T ss_pred             CHHHHHHHhcCCCHHHHHHHHHHcCHHHHHHHhcCCChhHHHHHHhccCHHHHHHHhcCCCHHHHHHHHhccchhHHHHH
Confidence            34556677778888888877754     3444445434445555544445667777777777777777653     3333


Q ss_pred             hcc-ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHH
Q 017249           96 AVR-NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAA  133 (375)
Q Consensus        96 ~~~-~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~  133 (375)
                      ..+ ++..|..+...-+.+.|..++++.++.++..++..
T Consensus       147 ~~D~d~~VR~~aA~~~~~~~L~~l~~D~d~~VR~~aa~~  185 (233)
T d1lrva_         147 MRDEDRQVRKLVAKRLPEESLGLMTQDPEPEVRRIVASR  185 (233)
T ss_dssp             TTCSCHHHHHHHHHHSCGGGGGGSTTCSSHHHHHHHHHH
T ss_pred             hcCCCHHHHHHHHHhcCHHHHHHHccCCCHHHHHHHHHh
Confidence            332 44556666665566777777777777777666643

>d1lsha1 a.118.4.1 (A:285-620) Lipovitellin-phosvitin complex, superhelical domain {Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Lipovitellin-phosvitin complex, superhelical domain
family: Lipovitellin-phosvitin complex, superhelical domain
domain: Lipovitellin-phosvitin complex, superhelical domain
species: Lamprey (Ichthyomyzon unicuspis) [TaxId: 30308]

Probab=95.38  E-value=0.22  Score=42.83  Aligned_cols=214  Identities=14%  Similarity=0.119  Sum_probs=120.3

Q ss_pred             hhHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC----CCHHHHHHHHHHHHHhhc
Q 017249           22 RKQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS----PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        22 ~~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~----~~~~~~~~a~~~L~~L~~   97 (375)
                      .....+..+.+++.++..... +|...+..+.... ..+.+      .+..+.+++.+    .++.++..+.-+++++..
T Consensus        85 GT~~a~~~i~~~I~~~~ls~~-ea~~~l~~l~~~~-~Pt~~------~l~~~~~l~~~~~~~~~~~l~~~a~La~gslv~  156 (336)
T d1lsha1          85 ATSEALLFLKRTLASEQLTSA-EATQIVASTLSNQ-QATRE------SLSYARELLNTSFIRNRPILRKTAVLGYGSLVF  156 (336)
T ss_dssp             CSHHHHHHHHHHHHTTCSCHH-HHHHHHHHHHHTC-CCCHH------HHHHHHHHHTCHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHcCCCCHH-HHHHHHHHHhccC-CCCHH------HHHHHHHHHcCcccccchhHHHHHHHHHHHHHH
Confidence            344455555565554433222 2333444444333 11222      24556666654    356777778877777764


Q ss_pred             cChhhHHHHHHcCChHHHHHhh----cCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccC-------CHH
Q 017249           98 RNERNKVKIATAGAIPPLVELL----KFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSG-------SVQ  166 (375)
Q Consensus        98 ~~~~~r~~i~~~g~i~~Lv~lL----~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~-------~~~  166 (375)
                      ..-. ...-+....++.+...+    ...+.+-+..++.+|+|+-          ....++.|..++...       +..
T Consensus       157 ~~c~-~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~LkaLGN~g----------~p~~i~~l~~~l~~~~~~~~~~~~~  225 (336)
T d1lsha1         157 RYCA-NTVSCPDELLQPLHDLLSQSSDRAKEEEIVLALKALGNAG----------QPNSIKKIQRFLPGQGKSLDEYSTR  225 (336)
T ss_dssp             HHHT-TCSSCCGGGTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------CGGGHHHHHTTSTTSSSCCCCSCHH
T ss_pred             HHhc-CCCCCcHHHHHHHHHHHHHhhcccchHHHHHHHHHHhccC----------CHhHHHHHHHHhcccccccccccHH
Confidence            2000 00000122344444444    4556666677888898883          245678888887542       467


Q ss_pred             HHHHHHHHHHHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhhhHHHhhccCcHHHHHHHhc
Q 017249          167 GRVDAVTALHYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEGRIAITNSDGGILTLVETVE  246 (375)
Q Consensus       167 ~~~~a~~~L~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~g~v~~Lv~lL~  246 (375)
                      ++..|.++|.+++....  .     .+.+.+..++.+...+..++..|..+|-.  ..|.        ...+..+...+.
T Consensus       226 vR~aAi~Alr~~~~~~p--~-----~v~~~l~~i~~n~~e~~EvRiaA~~~lm~--t~P~--------~~~l~~i~~~l~  288 (336)
T d1lsha1         226 VQAEAIMALRNIAKRDP--R-----KVQEIVLPIFLNVAIKSELRIRSCIVFFE--SKPS--------VALVSMVAVRLR  288 (336)
T ss_dssp             HHHHHHHTTTTGGGTCH--H-----HHHHHHHHHHHCTTSCHHHHHHHHHHHHH--TCCC--------HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhhhcCc--H-----HHHHHHHHHHcCCCCChHHHHHHHHHHHh--cCCC--------HHHHHHHHHHHH
Confidence            89999999988865421  1     12345667777766667777666555432  2221        124455555664


Q ss_pred             -cCChHHHHHHHHHHHHhcccCcHHH
Q 017249          247 -DGSLVSTQHAVGALLSLCQSCRDKY  271 (375)
Q Consensus       247 -~~~~~~~~~a~~~L~~l~~~~~~~~  271 (375)
                       +.+..+.......|.+++....|+.
T Consensus       289 ~E~~~QV~sfv~S~l~~la~s~~P~~  314 (336)
T d1lsha1         289 REPNLQVASFVYSQMRSLSRSSNPEF  314 (336)
T ss_dssp             TCSCHHHHHHHHHHHHHHTTCCSGGG
T ss_pred             hCcHHHHHHHHHHHHHHHHhCCCcch
Confidence             4567788888888888888766543

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.88  E-value=3.2  Score=35.16  Aligned_cols=191  Identities=13%  Similarity=0.093  Sum_probs=114.7

Q ss_pred             HHHHHhcCCC-HHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhC----C-------CCHHHHHHHHHHHHHhh
Q 017249           29 ELSDKLINGD-LETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLV----S-------PNLDAIESSLLALLNLA   96 (375)
Q Consensus        29 ~Lv~~L~s~~-~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~----~-------~~~~~~~~a~~~L~~L~   96 (375)
                      ..|..|+++- .+.....+..|.--...++..+...| ..+|+..|+++|.    .       .+...+..+++||..+.
T Consensus         6 ~yv~~l~~~~~~~~~~~~L~sL~v~Lrt~~~sWv~~F-~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalm   84 (343)
T d2bnxa1           6 MYIQELRSGLRDMHLLSCLESLRVSLNNNPVSWVQTF-GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFM   84 (343)
T ss_dssp             HHHHHHTSCCCHHHHHHHHHHHHHHHHHSCHHHHHHH-HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCccHHHHHHHHHHHHHhcCCchHHHHH-HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHh
Confidence            4455555442 23333344444433555546788888 5667888888773    1       13567888999999998


Q ss_pred             ccChhhHHHHHH-cCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCChhHHHhcCChHHHHHHhccCCHHHHHHHHHHH
Q 017249           97 VRNERNKVKIAT-AGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNKPAIAASGAAPLLVQILHSGSVQGRVDAVTAL  175 (375)
Q Consensus        97 ~~~~~~r~~i~~-~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a~~~L  175 (375)
                      . +......+.+ ..++..++..|.++.+.++..|+.+|..++...++      .++.+..++.+.              
T Consensus        85 n-~~~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~elL~~lc~~~~~------~~g~~~vL~Al~--------------  143 (343)
T d2bnxa1          85 N-NKFGIKTMLETEEGILLLVRAMDPAVPNMMIDAAKLLSALCILPQP------EDMNERVLEAMT--------------  143 (343)
T ss_dssp             S-SHHHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHHHHHHHHTCCSS------TTHHHHHHHHHH--------------
T ss_pred             c-cHHHHHHHHcChHHHHHHHHccCCCchHHHHHHHHHHHHHHhccCC------CchHHHHHHHHH--------------
Confidence            7 4555555555 78899999999999999999999999998865331      112222222221              


Q ss_pred             HHhccCCCCchhhhhcCCcHHHHHHhhhcccchHHHHHHHHHHHHhhCChhh-------hHHHhhccCcHHHHHHHhcc-
Q 017249          176 HYLSTCKENSSPILDATAVPPLINLLKDCKKYSKFAEKATALLEILSSSEEG-------RIAITNSDGGILTLVETVED-  247 (375)
Q Consensus       176 ~~L~~~~~~~~~i~~~g~i~~Lv~ll~~~~~~~~~~~~a~~~L~~l~~~~~~-------~~~~~~~~g~v~~Lv~lL~~-  247 (375)
                       +..       ...+.+-+..+++.+.++. ...++..++..+..+..+++.       |..+. .. ++..++.-|+. 
T Consensus       144 -~~~-------~~~e~~RF~~lv~~l~~~~-~~ey~~a~m~lIN~li~~~~dl~~R~~lR~E~~-~~-Gl~~il~~l~~~  212 (343)
T d2bnxa1         144 -ERA-------EMDEVERFQPLLDGLKSGT-SIALKVGCLQLINALITPAEELDFRVHIRSELM-RL-GLHQVLQELREI  212 (343)
T ss_dssp             -HHH-------HHHTSCTTHHHHHHTSTTS-CHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH-HT-THHHHHHHHTTC
T ss_pred             -HHH-------HhcCCCcHHHHHHHHhccc-cHHHHHHHHHHHHHHHcCcccHHHHHHHHHHHH-HC-ChHHHHHHHHcc
Confidence             111       1123456677777776653 335666667777666654322       34444 34 45555666654 


Q ss_pred             CChHH
Q 017249          248 GSLVS  252 (375)
Q Consensus       248 ~~~~~  252 (375)
                      .++.+
T Consensus       213 ~~~~L  217 (343)
T d2bnxa1         213 ENEDM  217 (343)
T ss_dssp             CCHHH
T ss_pred             CChHH
Confidence            33433

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=91.47  E-value=0.49  Score=46.06  Aligned_cols=134  Identities=18%  Similarity=0.191  Sum_probs=95.0

Q ss_pred             HHHHHHHhc-CCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCCC--CHHHHHHHHHHHHHhhcc-----
Q 017249           27 IEELSDKLI-NGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVSP--NLDAIESSLLALLNLAVR-----   98 (375)
Q Consensus        27 l~~Lv~~L~-s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~~--~~~~~~~a~~~L~~L~~~-----   98 (375)
                      ++.+..+|. +-+++.++.|=..|..+...+           |+...|+..+.++  +..+|..|+-.|.|....     
T Consensus         4 ~~~l~~ll~~s~~~~~~k~Ae~~L~~~~~~p-----------~f~~~L~~i~~~~~~~~~iR~~A~i~lKn~i~~~W~~~   72 (959)
T d1wa5c_           4 LETVAKFLAESVIASTAKTSERNLRQLETQD-----------GFGLTLLHVIASTNLPLSTRLAGALFFKNFIKRKWVDE   72 (959)
T ss_dssp             HHHHHHHHHHTTSGGGHHHHHHHHHHHHTST-----------THHHHHHHHHHCTTSCHHHHHHHHHHHHHHHHHHSBCS
T ss_pred             HHHHHHHHHHCCChHHHHHHHHHHHHHHcCC-----------CHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHhcccc
Confidence            455666665 667778888888888875444           6677788877654  467899999888877642     


Q ss_pred             ------ChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccC-CChhHHHhcCChHHHHHHhccCCHHHHHHH
Q 017249           99 ------NERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAA-PNKPAIAASGAAPLLVQILHSGSVQGRVDA  171 (375)
Q Consensus        99 ------~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~-~~~~~i~~~~~l~~L~~lL~~~~~~~~~~a  171 (375)
                            +++.|..+.+     .|+..+.+.+..++...+.++..++..+ +..    .++.++.|++.+++++...+..+
T Consensus        73 ~~~~~i~~e~k~~Ik~-----~ll~~l~~~~~~ir~~l~~~i~~I~~~d~p~~----Wp~ll~~l~~~l~s~~~~~~~~~  143 (959)
T d1wa5c_          73 NGNHLLPANNVELIKK-----EIVPLMISLPNNLQVQIGEAISSIADSDFPDR----WPTLLSDLASRLSNDDMVTNKGV  143 (959)
T ss_dssp             SSCBSSCHHHHHHHHH-----HHHHHHHHSCHHHHHHHHHHHHHHHHHHSTTT----CTTHHHHHHTTCCSSCTTHHHHH
T ss_pred             cccCCCCHHHHHHHHH-----HHHHHHhCCcHHHHHHHHHHHHHHHHHhCccc----cHHHHHHHHHHhCCCCHHHHHHH
Confidence                  1233333333     5666666778889988999999987643 222    46778888888888888888888


Q ss_pred             HHHHHHhcc
Q 017249          172 VTALHYLST  180 (375)
Q Consensus       172 ~~~L~~L~~  180 (375)
                      +.+|..++.
T Consensus       144 L~~l~~i~k  152 (959)
T d1wa5c_         144 LTVAHSIFK  152 (959)
T ss_dssp             HHHHHHHHG
T ss_pred             HHHHHHHHH
Confidence            888877764

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.15  E-value=0.23  Score=36.90  Aligned_cols=74  Identities=12%  Similarity=0.121  Sum_probs=61.2

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhh------hCCHHHHHHHHHHHHHhhcCC
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTV------EGTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~------~~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++..|-.-|.++++.++..|+.+|-.+..++++.....+.+.+++..|+.++.      ..++.+++....++..-+..-
T Consensus        46 a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~~f  125 (145)
T d1ujka_          46 ATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTVGL  125 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHHHC
Confidence            45667777888999999999999999999987888888888899999999885      356789999999887765433

>d2bnxa1 a.118.1.23 (A:133-475) Diaphanous protein homolog 1, Diap1 (Dia1, DRF1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Diap1 N-terninal region-like
domain: Diaphanous protein homolog 1, Diap1 (Dia1, DRF1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=90.09  E-value=4.8  Score=34.01  Aligned_cols=119  Identities=16%  Similarity=0.088  Sum_probs=82.6

Q ss_pred             hHhHHHHHHHHhc----C-------CCHHHHHHHHHHHHHHHhhCChhhHHHHH-hcCChHHHHHhhCCCCHHHHHHHHH
Q 017249           23 KQALIEELSDKLI----N-------GDLETKIEAARDIRKVVKKSSLKTRSEFA-AAGVVQPLVLMLVSPNLDAIESSLL   90 (375)
Q Consensus        23 ~~~~l~~Lv~~L~----s-------~~~~~~~~a~~~l~~l~~~~~~~~~~~~~-~~g~v~~Lv~~L~~~~~~~~~~a~~   90 (375)
                      ..+++..|+..|.    .       .+...+..++++|..+....  ...+.+. ..+++..++..|.++...++..|+.
T Consensus        43 ~~~G~~~L~~~L~~l~~~~~~~~~~~d~~~e~e~l~CLkalmn~~--~G~~~vl~~~~~i~~l~~~L~s~~~~tr~~a~e  120 (343)
T d2bnxa1          43 GAEGLASLLDILKRLHDEKEETSGNYDSRNQHEIIRCLKAFMNNK--FGIKTMLETEEGILLLVRAMDPAVPNMMIDAAK  120 (343)
T ss_dssp             HHHHHHHHHHHHHHHHTCCTTTCCTTHHHHHHHHHHHHHHHTSSH--HHHHHHHHSSSHHHHHHHTCCTTSHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHhccH--HHHHHHHcChHHHHHHHHccCCCchHHHHHHHH
Confidence            3456666666553    1       13557788999999998866  4444444 4589999999999999999999999


Q ss_pred             HHHHhhccC--hhhHH----------HHHHcCChHHHHHhhcCC-ChHHHHHHHHHHHHhhccCCC
Q 017249           91 ALLNLAVRN--ERNKV----------KIATAGAIPPLVELLKFQ-NGTLRELAAAAILTLSAAAPN  143 (375)
Q Consensus        91 ~L~~L~~~~--~~~r~----------~i~~~g~i~~Lv~lL~~~-~~~~~~~a~~~L~~Ls~~~~~  143 (375)
                      .|..+|.-.  +....          ...+.+-+.+++..+++. +.+.+..++..+..+....+.
T Consensus       121 lL~~lc~~~~~~~g~~~vL~Al~~~~~~~e~~RF~~lv~~l~~~~~~ey~~a~m~lIN~li~~~~d  186 (343)
T d2bnxa1         121 LLSALCILPQPEDMNERVLEAMTERAEMDEVERFQPLLDGLKSGTSIALKVGCLQLINALITPAEE  186 (343)
T ss_dssp             HHHHHHTCCSSTTHHHHHHHHHHHHHHHHTSCTTHHHHHHTSTTSCHHHHHHHHHHHHHHHTTCSC
T ss_pred             HHHHHHhccCCCchHHHHHHHHHHHHHhcCCCcHHHHHHHHhccccHHHHHHHHHHHHHHHcCccc
Confidence            999988421  12222          222456688888888766 567777777767667666553

>d1ujka_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.87  E-value=1  Score=33.13  Aligned_cols=77  Identities=13%  Similarity=0.083  Sum_probs=63.1

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~   97 (375)
                      .+++..+-..|+++++.++..|+..|-.+..+..+.....+.+.+++..|+.+++.      .+..++...+..|...+.
T Consensus        44 k~a~r~l~krl~~~~~~~~l~aL~LLe~~vkNCG~~f~~evas~~Fl~~L~kli~~k~~~~~~~~~Vk~kil~li~~W~~  123 (145)
T d1ujka_          44 PLATRLLAHKIQSPQEWEAIQALTVLETCMKSCGKRFHDEVGKFRFLNELIKVVSPKYLGSRTSEKVKNKILELLYSWTV  123 (145)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHTSCCHHHHHHHTSHHHHHHHHHHHCTTTTGGGSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHHHHHhhccCCCCCcHHHHHHHHHHHHHHHH
Confidence            45677788888899999999999999999888536677777788999999999863      467899999999988776


Q ss_pred             cCh
Q 017249           98 RNE  100 (375)
Q Consensus        98 ~~~  100 (375)
                      ..+
T Consensus       124 ~fp  126 (145)
T d1ujka_         124 GLP  126 (145)
T ss_dssp             HCT
T ss_pred             HCC
Confidence            543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=89.22  E-value=1.3  Score=32.53  Aligned_cols=76  Identities=14%  Similarity=0.058  Sum_probs=62.0

Q ss_pred             HhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhhc
Q 017249           24 QALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLAV   97 (375)
Q Consensus        24 ~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~~   97 (375)
                      .+++..|-..|+++++.++..|+..|-.+..+.-+.....+.+..++..|+.+++.      .+..++...+..+...+.
T Consensus        37 k~a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~  116 (143)
T d1mhqa_          37 THAPWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTV  116 (143)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHH
Confidence            45677788888899999999999999999887635666677777899999999863      468899999999988876


Q ss_pred             cC
Q 017249           98 RN   99 (375)
Q Consensus        98 ~~   99 (375)
                      ..
T Consensus       117 ~f  118 (143)
T d1mhqa_         117 WF  118 (143)
T ss_dssp             HC
T ss_pred             Hc
Confidence            43

>d1wa5c_ a.118.1.1 (C:) Exportin Cse1p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Armadillo repeat
domain: Exportin Cse1p
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=88.72  E-value=2.8  Score=40.40  Aligned_cols=180  Identities=8%  Similarity=0.104  Sum_probs=97.9

Q ss_pred             CCCHHHHHHHHHHHHHhhccChhhHHHHHHcCChHHHHHhhcCCChHHHHHHHHHHHHhhccCCCh---------hHHH-
Q 017249           79 SPNLDAIESSLLALLNLAVRNERNKVKIATAGAIPPLVELLKFQNGTLRELAAAAILTLSAAAPNK---------PAIA-  148 (375)
Q Consensus        79 ~~~~~~~~~a~~~L~~L~~~~~~~r~~i~~~g~i~~Lv~lL~~~~~~~~~~a~~~L~~Ls~~~~~~---------~~i~-  148 (375)
                      .....++..+++.+...+....  ...+  ...++.++..|.+.++.++..|+.++..+.......         ..+. 
T Consensus       469 ~~~~~lr~~~~~~i~~~~~~~~--~~~~--~~~~~~l~~~L~~~~~~V~~~a~~al~~~~~~~~~~~~~~~~~~~~~l~p  544 (959)
T d1wa5c_         469 IPHIILRVDAIKYIYTFRNQLT--KAQL--IELMPILATFLQTDEYVVYTYAAITIEKILTIRESNTSPAFIFHKEDISN  544 (959)
T ss_dssp             CSCHHHHHHHHHHHHHTGGGSC--HHHH--HHHHHHHHHHTTCSCHHHHHHHHHHHHHHTTCBSCSSSCCBSSCGGGTTT
T ss_pred             CchHHHHHHHHHHHHHHHhhcc--HHHH--HHHHHHHHHHhCCCchhHHHHHHHHHHHHHHhhcccccchhhccHHHHHh
Confidence            3457789999999999886422  2222  346789999999999999999999999987643211         1110 


Q ss_pred             -hcCChHHHHHHhccCCHH-----HHHHHHHHHHHhccC-CCCchhhhhcCCcHHHHHHhhh---cccchHHHHHHHHHH
Q 017249          149 -ASGAAPLLVQILHSGSVQ-----GRVDAVTALHYLSTC-KENSSPILDATAVPPLINLLKD---CKKYSKFAEKATALL  218 (375)
Q Consensus       149 -~~~~l~~L~~lL~~~~~~-----~~~~a~~~L~~L~~~-~~~~~~i~~~g~i~~Lv~ll~~---~~~~~~~~~~a~~~L  218 (375)
                       -...+..|+..+......     ....+..++..+... .+...... ...++.|..++..   ..........+..++
T Consensus       545 ~l~~ll~~L~~~l~~~~~~~~~~~~~~~ll~~l~~ii~~~~~~~~~~~-~~i~~~l~~~~~~~~~~~~~~~~~~~~~e~l  623 (959)
T d1wa5c_         545 STEILLKNLIALILKHGSSPEKLAENEFLMRSIFRVLQTSEDSIQPLF-PQLLAQFIEIVTIMAKNPSNPRFTHYTFESI  623 (959)
T ss_dssp             THHHHHHHHHHHHHTTCCCHHHHTSCHHHHHHHHHHHHHHTTTTGGGH-HHHHHHHHHHHHHHTTSCCCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhcCccchHHHHHHHHHH
Confidence             012234444444333211     123355555555422 22222211 1234445444432   222334455566666


Q ss_pred             HHhhC--ChhhhHHHhhccCcHHHHHHHhccCChHHHHHHHHHHHHhcc
Q 017249          219 EILSS--SEEGRIAITNSDGGILTLVETVEDGSLVSTQHAVGALLSLCQ  265 (375)
Q Consensus       219 ~~l~~--~~~~~~~~~~~~g~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~  265 (375)
                      ..+..  +++....+.  ...++.+...+..........+...+..+..
T Consensus       624 ~~l~~~~~~~~~~~l~--~~l~p~i~~~~~~~~~~~~~~~~~l~~~~~~  670 (959)
T d1wa5c_         624 GAILNYTQRQNLPLLV--DSMMPTFLTVFSEDIQEFIPYVFQIIAFVVE  670 (959)
T ss_dssp             HHHHHTSCGGGHHHHH--HHHHHHHHHHHHTTCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHhcCchhHHHHH--HHHHHHHHHHHhccchhHHHHHHHHHHHHHH
Confidence            66543  344444433  3566777777766555556666666655543

>d1mhqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=86.51  E-value=0.7  Score=34.03  Aligned_cols=74  Identities=14%  Similarity=0.075  Sum_probs=60.8

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhcCC
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++..|-.-|.++++..+..|+.+|-.+..++++.....+.+..++..|+.++..      .++.|++.+..++...+..-
T Consensus        39 a~ral~krl~~~n~~~~l~aL~LLe~~vkNcG~~fh~evask~Fl~~l~~li~~k~~~~~~~~~Vk~kil~li~~Wa~~f  118 (143)
T d1mhqa_          39 APWLLAHKIQSPQEKEALYALTVLEMCMNHCGEKFHSEVAKFRFLNELIKVLSPKYLGSWATGKVKGRVIEILFSWTVWF  118 (143)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHTSHHHHHHHHHTTCCSTTSCCCCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCHHHHHHHhhHHHHHHHHHHHccccCCCCCCHHHHHHHHHHHHHHHHHc
Confidence            555667778889999999999999999998877788888888899999998863      46889999999888766533

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=86.41  E-value=0.67  Score=34.20  Aligned_cols=73  Identities=7%  Similarity=0.071  Sum_probs=60.2

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhhC-CHHHHHHHHHHHHHhhcC
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVEG-TFEAQERARTLLDLLRDT  309 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~~-~~~~~~~A~~~L~~l~~~  309 (375)
                      ++..|...|.++++.++..|+.+|-.+..+++......+.+.+.+..|..++... +..+++.+..++..-+..
T Consensus        43 a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  116 (145)
T d1dvpa1          43 AFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA  116 (145)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            5566777788899999999999999999988666677777788899999888754 678999999988886653

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.54  E-value=2.3  Score=31.36  Aligned_cols=78  Identities=10%  Similarity=0.086  Sum_probs=62.3

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC------CCHHHHHHHHHHHHHhh
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS------PNLDAIESSLLALLNLA   96 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~------~~~~~~~~a~~~L~~L~   96 (375)
                      ..+++..+-..|+++++.++..|+..|-.+..+..+.....+.+..++..|+++++.      .+..++...+..+...+
T Consensus        37 ~k~a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa  116 (151)
T d1juqa_          37 PQIAVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWT  116 (151)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHH
Confidence            356777888888899999999999999999988634455666677889999999864      36789999999999888


Q ss_pred             ccCh
Q 017249           97 VRNE  100 (375)
Q Consensus        97 ~~~~  100 (375)
                      ...+
T Consensus       117 ~~f~  120 (151)
T d1juqa_         117 MALP  120 (151)
T ss_dssp             HHCT
T ss_pred             HHcc
Confidence            6543

>d1juqa_ a.118.9.2 (A:) ADP-ribosylation factor binding protein Gga3 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: ADP-ribosylation factor binding protein Gga3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.29  E-value=1.3  Score=32.81  Aligned_cols=74  Identities=11%  Similarity=0.119  Sum_probs=60.0

Q ss_pred             cHHHHHHHhccCChHHHHHHHHHHHHhcccCcHHHHHHHHHcCChHHHHHHhhh------CCHHHHHHHHHHHHHhhcCC
Q 017249          237 GILTLVETVEDGSLVSTQHAVGALLSLCQSCRDKYRQLILKEGAIPGLLRLTVE------GTFEAQERARTLLDLLRDTP  310 (375)
Q Consensus       237 ~v~~Lv~lL~~~~~~~~~~a~~~L~~l~~~~~~~~~~~l~~~g~v~~L~~ll~~------~~~~~~~~A~~~L~~l~~~~  310 (375)
                      ++..|-.-|.++++..+..|+.+|-.+..+++......+.+..++..|+.++..      .++.|++....++..-+..-
T Consensus        40 a~rai~krl~~~~~~~~l~aL~LLe~~vkNCG~~F~~evask~Fl~~l~kli~~k~~~~~~~~~Vk~kil~ll~~Wa~~f  119 (151)
T d1juqa_          40 AVRLLAHKIQSPQEWEALQALTVLEACMKNCGRRFHNEVGKFRFLNELIKVVSPKYLGDRVSEKVKTKVIELLYSWTMAL  119 (151)
T ss_dssp             HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHTSHHHHHHHHHHHCCCCCCTTSCHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHHHHHccHHHHHHHhhHHHHHHHHHHHcccCCCCcccHHHHHHHHHHHHHHHHHc
Confidence            556677778888999999999999999998877777888788899999998863      36789999988888776543

>d1dvpa1 a.118.9.2 (A:1-145) Hrs {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ENTH/VHS domain
family: VHS domain
domain: Hrs
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=82.09  E-value=1.5  Score=32.25  Aligned_cols=76  Identities=12%  Similarity=0.100  Sum_probs=59.8

Q ss_pred             hHhHHHHHHHHhcCCCHHHHHHHHHHHHHHHhhCChhhHHHHHhcCChHHHHHhhCC-CCHHHHHHHHHHHHHhhcc
Q 017249           23 KQALIEELSDKLINGDLETKIEAARDIRKVVKKSSLKTRSEFAAAGVVQPLVLMLVS-PNLDAIESSLLALLNLAVR   98 (375)
Q Consensus        23 ~~~~l~~Lv~~L~s~~~~~~~~a~~~l~~l~~~~~~~~~~~~~~~g~v~~Lv~~L~~-~~~~~~~~a~~~L~~L~~~   98 (375)
                      ..+++..|...|+++++.++..|+..|-.+..+..+.....+.+.+++..|+.++++ .+..++...+..+...+..
T Consensus        40 ~k~a~ral~krl~~~n~~v~l~aL~LLd~~vkNcG~~f~~~i~s~~fl~~l~~l~~~~~~~~Vk~kil~li~~W~~~  116 (145)
T d1dvpa1          40 PKNAFAAIKKKMNSPNPHSSCYSLLVLESIVKNCGAPVHEEVFTKENCEMFSSFLESTPHENVRQKMLELVQTWAYA  116 (145)
T ss_dssp             HHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSHHHHHHHHSSHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHccchHHHHHHhhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHH
Confidence            345778888889999999999999999999988623445555566788888888855 4678999999988887753