Citrus Sinensis ID: 017256

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MEIGGNIFIREDTGNSNNNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGRALSLLSSKAESWVSSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGDHLV
Secondary Structure (PSIPRED)
cccccccEEEccccccccccccccccHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccEEEEccEEEEEccccccccccccccccHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccEEEccccccccccccccccHHHHHHHccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccEEEEccccccHHHHHHHHHHccEHHHcccccEEEEcccHHHHHHHcHHHccHHHHcHccHHHHHHHHccHHHcccccccccccccccccccccccccccccccccccccccccHcccccccccccccccccccccccccccccccccccccHHcccccccccccccccccccccccccccccccccccccHHccccccccccccccccccHHHHHccccccccc
Coil and Loop (DISEMBL)
meiggnifiredtgnsnnnnsnnLAWENMWAlnnhsrfdlgnssslyatAEITstthtsegnaahalmfphgqslyagdgsnlhpdphlmclklgkrhyfedatatsigdrgfsmvkkgkpyytfasaggggvgpsssspvlvtstatvprcqvegchvplinakdyhrrhkvcevhskapkvkVLGLEQRFcqqcsrfhvvsefddskrSCRRRLAGhnerrrkssheslsrnssqGRALSLLSSKaeswvsssdlSSRCSAALRELIAENRAAIVARHLILDGRDwhlhlandgetqmvcstsmtsshQYQMLTEQhnwgryqqtNTHVTLDLmqaptedlgflsvrgetkdeeeeEECSEIWSslegdhlv
Flexible Loop (DISEMBL)
meiggnifiredtgnsnnNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATatsigdrgfsmVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFhvvsefddskrscrrrlaghnerrrkssheslsrnssqgrALSLLSSkaeswvsssdLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRgetkdeeeeeecseiwsslegdhlv
Low Complexity Region (SEG)
MEIGGNIFIREDTGnsnnnnsnnLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFasaggggvgpsssspvlvtstatvpRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGRALSLLSSKAEswvsssdlssrcsAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGetkdeeeeeecseiwssleGDHLV
Disordered region (IsUnstruct)
***********************LAWENMWALNNHSRFDLGNSSSLYATAEI***********AHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAG***********VLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEF*******************************************************CSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTS****HQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFL****************************
Disordered Region (DISOPRED)
************************AWENMWALNNHSRFDLGNSS*********************************************MCLKLGKRHYFED***************************************************VEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR*************************************************************************************************************************************************************L**D***
Disordered Region (DISEMBL)
MEIGGNIFIREDTGNSNNNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAG**************TSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRR**********************************************SAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSV**************************
Disordered Region (DISPRO)
***GGNIFI**********NSNNLAWENMWALNNHSRFDLGNSSSLYATAEITST*******************************PHLMCLKLGKRHYFEDAT*******************************************TVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRR***************************************************************************************************************************PTEDLGFL****************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEIGGNIFIREDTGNSNNNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGRALSLLSSKAESWVSSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGDHLV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q7XT42	360	Squamosa promoter-binding	yes	no	0.740	0.769	0.406	3e-46
Q01JD1	360	Squamosa promoter-binding	N/A	no	0.740	0.769	0.406	4e-46
Q700W2	375	Squamosa promoter-binding	yes	no	0.299	0.298	0.555	6e-32
A2YGR5	475	Squamosa promoter-binding	N/A	no	0.371	0.292	0.5	2e-31
Q5Z818	475	Squamosa promoter-binding	no	no	0.360	0.284	0.503	2e-31
Q8S9L0	396	Squamosa promoter-binding	no	no	0.312	0.295	0.5	5e-31
Q9FZK0	393	Squamosa promoter-binding	no	no	0.331	0.315	0.5	8e-31
A3A2Z8	469	Squamosa promoter-binding	no	no	0.350	0.279	0.513	1e-30
A2X0Q6	469	Squamosa promoter-binding	N/A	no	0.350	0.279	0.513	1e-30
Q9S840	419	Squamosa promoter-binding	no	no	0.409	0.365	0.425	9e-30

>sp|Q7XT42|SPL7_ORYSJ Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. japonica GN=SPL7 PE=2 SV=2

 Score =  186 bits (472), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 164/317 (51%), Gaps = 40/317 (12%)

Query: 89  LMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTAT 148
           L CLKLGKR  F        GD    + +           G    G         T+   
Sbjct: 53  LTCLKLGKRPCFWG------GDGAGQVAQGSGGGGGGGGGGSADQGKRKEK--AATAVPV 104

Query: 149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDS 208
           VPRCQVEGC + L   K+YHRRHKVCEVH+KAP+V V G EQRFCQQCSRFHV++EFDD+
Sbjct: 105 VPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDA 164

Query: 209 KRSCRRRLAGHNERRRKS-SHESLSRNS--------------------SQGRALSLLSSK 247
           K+SCRRRLAGHNERRR+S + E+++R S                    S   ALSLLSS 
Sbjct: 165 KKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSLLSSA 224

Query: 248 AES--WV-SSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCST 304
             +  W+  + D+S+R SAAL ELIAENRAA+++     D R         G +    + 
Sbjct: 225 RATGPWLMPTPDISARSSAALDELIAENRAALLSWQFFSD-RQPPPAGRPTGRSPGSETA 283

Query: 305 SMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLG----FLSVRGETKDEEEEEE 360
               +H           G+++  + HVTLDLMQA T   G    F  V      E  +  
Sbjct: 284 GGWHAHLQARPPPPGAGGQHENQSGHVTLDLMQATTAAGGSGAPFRPVPARPPKEGGDAG 343

Query: 361 C-SEIW--SSLEGDHLV 374
           C S+ W  S +EG  +V
Sbjct: 344 CTSDAWTPSPMEGARVV 360

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.
Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q01JD1|SPL7_ORYSI Squamosa promoter-binding-like protein 7 OS=Oryza sativa subsp. indica GN=SPL7 PE=2 SV=1

 Score =  185 bits (470), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 129/317 (40%), Positives = 164/317 (51%), Gaps = 40/317 (12%)

Query: 89  LMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTAT 148
           L CLKLGKR  F        GD    + +           G    G         T+   
Sbjct: 53  LTCLKLGKRPCFWG------GDGAGQVAQGSGGGGGGGGGGSADQGKRKEK--AATAVPV 104

Query: 149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDS 208
           VPRCQVEGC + L   K+YHRRHKVCEVH+KAP+V V G EQRFCQQCSRFHV++EFDD+
Sbjct: 105 VPRCQVEGCDITLQGVKEYHRRHKVCEVHAKAPRVVVHGTEQRFCQQCSRFHVLAEFDDA 164

Query: 209 KRSCRRRLAGHNERRRKS-SHESLSRNS--------------------SQGRALSLLSSK 247
           K+SCRRRLAGHNERRR+S + E+++R S                    S   ALSLLSS 
Sbjct: 165 KKSCRRRLAGHNERRRRSNASEAMARGSAHPHGMPVLGHGFPPYGLPTSSAGALSLLSSA 224

Query: 248 AES--WV-SSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCST 304
             +  W+  + D+S+R SAAL ELIAENRAA+++     D R         G +    + 
Sbjct: 225 RATGPWLMPTPDISARSSAALDELIAENRAALLSWQFFSD-RQPPPAGRPTGRSPGSETA 283

Query: 305 SMTSSHQYQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLG----FLSVRGETKDEEEEEE 360
               +H           G+++  + HVTLDLMQA T   G    F  V      E  +  
Sbjct: 284 GGWHAHLQARPPPPGAGGQHEHQSGHVTLDLMQATTAAGGSGAPFRPVPARPAKEGGDAG 343

Query: 361 C-SEIW--SSLEGDHLV 374
           C S+ W  S +EG  +V
Sbjct: 344 CTSDAWTPSPMEGARVV 360

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q700W2|SPL9_ARATH Squamosa promoter-binding-like protein 9 OS=Arabidopsis thaliana GN=SPL9 PE=2 SV=2

 Score =  138 bits (348), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 70/126 (55%), Positives = 79/126 (62%), Gaps = 14/126 (11%)

Query: 149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDS 208
           +PRCQVEGC + L NAK Y+ RH+VC VHSK PKV V G+EQRFCQQCSRFH + EFD  
Sbjct: 71  IPRCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLE 130

Query: 209 KRSCRRRLAGHNERRRKSSHESLS--------------RNSSQGRALSLLSSKAESWVSS 254
           KRSCRRRLAGHNERRRK    SLS               N   G   S L ++   W SS
Sbjct: 131 KRSCRRRLAGHNERRRKPQPASLSVLASRYGRIAPSLYENGDAGMNGSFLGNQEIGWPSS 190

Query: 255 SDLSSR 260
             L +R
Sbjct: 191 RTLDTR 196

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|A2YGR5|SPL12_ORYSI Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. indica GN=SPL12 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 78/156 (50%), Positives = 98/156 (62%), Gaps = 17/156 (10%)

Query: 84  HPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLV 143
           H +P ++ LKLGKR YFE+         G   VK        +SA  G   PS+    + 
Sbjct: 125 HGEP-VIGLKLGKRTYFENVC-------GGQNVKS-------SSAASGVTCPSTVVKKMK 169

Query: 144 TSTATVPR--CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHV 201
            S  +     CQVEGC V L +A++YHR+HKVCE HSKAPKV V GLE+RFCQQCSRFH 
Sbjct: 170 VSQQSTQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHG 229

Query: 202 VSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQ 237
           ++EFD  K+SCRRRL+ HN RRRK   E++S  SS+
Sbjct: 230 LAEFDQKKKSCRRRLSDHNARRRKPQQEAISFGSSR 265

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q5Z818|SPL12_ORYSJ Squamosa promoter-binding-like protein 12 OS=Oryza sativa subsp. japonica GN=SPL12 PE=2 SV=1

 Score =  136 bits (343), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 76/151 (50%), Positives = 95/151 (62%), Gaps = 16/151 (10%)

Query: 89  LMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTAT 148
           ++ LKLGKR YFE+         G   VK        +SA  G   PS+    +  S  +
Sbjct: 129 VIGLKLGKRTYFENVC-------GGQNVKS-------SSAASGVTCPSTVVKKMKVSQQS 174

Query: 149 VPR--CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
                CQVEGC V L +A++YHR+HKVCE HSKAPKV V GLE+RFCQQCSRFH ++EFD
Sbjct: 175 TQSSYCQVEGCKVDLSSAREYHRKHKVCEAHSKAPKVIVSGLERRFCQQCSRFHGLAEFD 234

Query: 207 DSKRSCRRRLAGHNERRRKSSHESLSRNSSQ 237
             K+SCRRRL+ HN RRRK   E++S  SS+
Sbjct: 235 QKKKSCRRRLSDHNARRRKPQQEAISFGSSR 265

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8S9L0|SPL10_ARATH Squamosa promoter-binding-like protein 10 OS=Arabidopsis thaliana GN=SPL10 PE=2 SV=2

 Score =  135 bits (340), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 72/144 (50%), Positives = 89/144 (61%), Gaps = 27/144 (18%)

Query: 90  MCLKLGKRHYFE--------DATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPV 141
           +CLKLGKR Y E        D +A S+     S+V + K      S G            
Sbjct: 125 LCLKLGKRTYSEEFWGRNNNDLSAVSMNLLTPSVVARKKT----KSCG------------ 168

Query: 142 LVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHV 201
               +  VPRCQ++GC + L ++KDYHR+H+VCE HSK PKV V GLE+RFCQQCSRFH 
Sbjct: 169 ---QSMQVPRCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHA 225

Query: 202 VSEFDDSKRSCRRRLAGHNERRRK 225
           VSEFD+ KRSCR+RL+ HN RRRK
Sbjct: 226 VSEFDEKKRSCRKRLSHHNARRRK 249

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FZK0|SPL11_ARATH Squamosa promoter-binding-like protein 11 OS=Arabidopsis thaliana GN=SPL11 PE=2 SV=2

 Score =  134 bits (338), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 68/136 (50%), Positives = 84/136 (61%), Gaps = 12/136 (8%)

Query: 90  MCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATV 149
           +CLKLGKR Y E+    +  +     +K   P      +             L   +  V
Sbjct: 125 LCLKLGKRTYSEEYWGRNNNEISAVSMKLLTPSVVAGKSK------------LCGQSMPV 172

Query: 150 PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSK 209
           PRCQ++GC + L +AK YHR+HKVCE HSK PKV V GLE+RFCQQCSRFH VSEFD+ K
Sbjct: 173 PRCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKK 232

Query: 210 RSCRRRLAGHNERRRK 225
           RSCR+RL+ HN RRRK
Sbjct: 233 RSCRKRLSHHNARRRK 248

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

>sp|A3A2Z8|SPL3_ORYSJ Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. japonica GN=SPL3 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 87/144 (60%), Gaps = 13/144 (9%)

Query: 89  LMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTAT 148
           L+ LKLGKR YFED         G   VK      + A+       P  +  V V    T
Sbjct: 130 LIGLKLGKRTYFEDVC-------GGQNVKSSPSGVSVATPS-----PGLAKKVKVAQQNT 177

Query: 149 V-PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDD 207
             P CQVEGC+V L +AK YHR+H+VCE HSK  KV V GLE+RFCQQCSRFH ++EFD 
Sbjct: 178 QNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQ 237

Query: 208 SKRSCRRRLAGHNERRRKSSHESL 231
            KRSCRRRL  HN RRRK   E++
Sbjct: 238 KKRSCRRRLHDHNARRRKPQPEAI 261

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|A2X0Q6|SPL3_ORYSI Squamosa promoter-binding-like protein 3 OS=Oryza sativa subsp. indica GN=SPL3 PE=2 SV=1

 Score =  134 bits (337), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 74/144 (51%), Positives = 87/144 (60%), Gaps = 13/144 (9%)

Query: 89  LMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTAT 148
           L+ LKLGKR YFED         G   VK      + A+       P  +  V V    T
Sbjct: 130 LIGLKLGKRTYFEDVC-------GGQNVKSSPSGVSVATPS-----PGLAKKVKVAQQNT 177

Query: 149 V-PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDD 207
             P CQVEGC+V L +AK YHR+H+VCE HSK  KV V GLE+RFCQQCSRFH ++EFD 
Sbjct: 178 QNPHCQVEGCNVDLSSAKPYHRKHRVCEPHSKTLKVIVAGLERRFCQQCSRFHGLAEFDQ 237

Query: 208 SKRSCRRRLAGHNERRRKSSHESL 231
            KRSCRRRL  HN RRRK   E++
Sbjct: 238 KKRSCRRRLHDHNARRRKPQPEAI 261

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3' (By similarity). May be involved in panicle development.

Oryza sativa subsp. indica (taxid: 39946)

>sp|Q9S840|SPL2_ARATH Squamosa promoter-binding-like protein 2 OS=Arabidopsis thaliana GN=SPL2 PE=2 SV=1

 Score =  131 bits (329), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 80/188 (42%), Positives = 102/188 (54%), Gaps = 35/188 (18%)

Query: 50  AEITSTTHTSEGNAAHALMFPHG----QSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATA 105
           AE+ +   TSE   +    F  G     SL    GS    DP ++ LKLGKR YFED   
Sbjct: 78  AEVRTHNFTSETGESLPGEFAKGIDTSPSLELSFGSG---DP-VLGLKLGKRTYFED--- 130

Query: 106 TSIGDRGFSMVKKGKPYYTFASAGGGGVGPS--------SSSPVLVTSTATVPRCQVEGC 157
                           ++   +A G G+  +              +      P CQVEGC
Sbjct: 131 ----------------FWEVENAKGLGLPVTLASSSVSPVKKSKSIPQRLQTPHCQVEGC 174

Query: 158 HVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLA 217
           ++ L +AKDYHR+H++CE HSK PKV V G+E+RFCQQCSRFH +SEFD+ KRSCRRRL+
Sbjct: 175 NLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKKRSCRRRLS 234

Query: 218 GHNERRRK 225
            HN RRRK
Sbjct: 235 DHNARRRK 242

Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
224067602	398	hypothetical protein POPTRDRAFT_755123 [	0.933	0.876	0.574	1e-106
297734564	404	unnamed protein product [Vitis vinifera]	0.935	0.866	0.555	2e-92
359489267	461	PREDICTED: squamosa promoter-binding-lik	0.935	0.759	0.555	2e-92
449431972	340	PREDICTED: squamosa promoter-binding-lik	0.807	0.888	0.503	4e-87
449478231	833	PREDICTED: protein AATF-like [Cucumis sa	0.719	0.322	0.567	7e-87
356498202	344	PREDICTED: squamosa promoter-binding-lik	0.748	0.813	0.547	2e-73
356523080	342	PREDICTED: uncharacterized protein LOC10	0.700	0.766	0.537	2e-63
255541148	262	Squamosa promoter-binding protein, putat	0.606	0.866	0.532	3e-61
356503313	342	PREDICTED: uncharacterized protein LOC10	0.580	0.634	0.586	3e-61
242073936	418	hypothetical protein SORBIDRAFT_06g02463	0.593	0.531	0.444	8e-47

>gi|224067602|ref|XP_002302512.1| hypothetical protein POPTRDRAFT_755123 [Populus trichocarpa] gi|222844238|gb|EEE81785.1| hypothetical protein POPTRDRAFT_755123 [Populus trichocarpa]

 Score =  392 bits (1008), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 243/423 (57%), Positives = 281/423 (66%), Gaps = 74/423 (17%)

Query: 1   MEIGGNIFIREDTGNSNNNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEITSTTHTS- 59
           ME GGN            N+  NLAW+ +W LN  SRFDL +S++  A A IT+ T T+ 
Sbjct: 1   MENGGN--------KGQENDHANLAWD-IWELNT-SRFDLVDSNNTTAAAGITTNTTTAS 50

Query: 60  ----------EGNAAHALMFPHGQS---------------LYAGDGSNLHPDPHLMCLKL 94
                     E N+AH  +FP+  S               LYAGDGS LHPDPHLMCLKL
Sbjct: 51  VVENGSSTHPEANSAHGFLFPNRNSWLYHHNNSNSYQQLSLYAGDGSILHPDPHLMCLKL 110

Query: 95  GKRHYFEDATATS----IGDR----GFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTST 146
           GKRHYFED+T+ +    I DR    GFS+ K+GKPYYT +  GG    PSSSS V     
Sbjct: 111 GKRHYFEDSTSNNNINPISDRHVVGGFSVGKRGKPYYTVS--GGANDEPSSSSSV----- 163

Query: 147 ATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
             VPRCQVEGCHV L+NAK YHRRHKVCE+HSKA KV VLGLEQRFCQQCSRFHVVSEFD
Sbjct: 164 -NVPRCQVEGCHVALVNAKGYHRRHKVCEMHSKAAKVIVLGLEQRFCQQCSRFHVVSEFD 222

Query: 207 DSKRSCRRRLAGHNERRRKSSHESLSRNSSQ---------------GRALSLLSSKAESW 251
           D+KRSCRRRLAGHNERRRK S +S+SRN+S                G ALSLLSSKA+SW
Sbjct: 223 DAKRSCRRRLAGHNERRRKGSLDSVSRNASHDKLIAGRFPYIASPTGCALSLLSSKADSW 282

Query: 252 VSSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQ 311
           VS SDLSSR SAALRELIAE+RAAI AR LIL+    H H    GE+Q   S++   +HQ
Sbjct: 283 VSPSDLSSRSSAALRELIAEHRAAIPARQLILEK---HSHNHAMGESQP--SSNFFITHQ 337

Query: 312 YQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGD 371
            QML+E HNWGR+  T  HVTLDLMQAP+   GFLS RG  K++EE  ECS++WS+LEG 
Sbjct: 338 QQMLSEPHNWGRFNGTTMHVTLDLMQAPSSAFGFLSARG--KNKEEGGECSQLWSTLEGA 395

Query: 372 HLV 374
           H V
Sbjct: 396 HAV 398

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297734564|emb|CBI16615.3| unnamed protein product [Vitis vinifera]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 235/423 (55%), Positives = 275/423 (65%), Gaps = 73/423 (17%)

Query: 1   MEIGGNIFIREDTGN--SNNNNSNNLAWE--NMWALNNHSRFD---LGNSSSLYATAEIT 53
           ME GGN F     GN   N N+ ++LAW+  ++ A    SRFD    GNS +  A     
Sbjct: 1   MENGGNSF----NGNRGQNGNSGSHLAWDVRDLGA----SRFDWNCTGNSFNDDAATATA 52

Query: 54  STTHT-SEGNAAHALMFPH---------------------GQSLYAGDGSNLHPDPHLMC 91
           +   T  E    HALMFPH                      QSLY GDGS+LHPDPHLMC
Sbjct: 53  TDAPTQPEAGVGHALMFPHQATADVHHNQYYHQHNHHHHHQQSLYGGDGSHLHPDPHLMC 112

Query: 92  LKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPR 151
           LKLGKRHYFED+T       G S  K+G+PYY+  S+       S     +V S ATVPR
Sbjct: 113 LKLGKRHYFEDSTP------GISTDKRGRPYYSGGSSQSSATAVS-----VVGSPATVPR 161

Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
           CQVEGCHV L+NAKDYHRRHKVCE+HSKAPKV VLGLEQRFCQQCSRFH VSEFDDSKRS
Sbjct: 162 CQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHAVSEFDDSKRS 221

Query: 212 CRRRLAGHNERRRKSSHESLSRNSSQ-----------------GRALSLLSSKAESWVSS 254
           CRRRLAGHNERRRKSSH+S++RN SQ                 GRALSLLSSK++SWVSS
Sbjct: 222 CRRRLAGHNERRRKSSHDSVARNPSQAANKLMTGRFAYLSSPTGRALSLLSSKSDSWVSS 281

Query: 255 SDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLH---LANDGETQMVCSTSMTSSHQ 311
           ++LS R SAALRELIAENRAAI+AR LILD RDWH H   + + G  Q    + M   HQ
Sbjct: 282 AELSLRSSAALRELIAENRAAILARQLILD-RDWHWHHHGMEDSGGEQPGSDSLMP--HQ 338

Query: 312 YQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGD 371
           +QM     +W R+ + N HVTLDLMQAP+   G LSVR ++K+EEEE   SE+W+SLEG 
Sbjct: 339 HQMFPGSRSWERFHEANGHVTLDLMQAPSSAFGLLSVREKSKEEEEEC--SELWNSLEGT 396

Query: 372 HLV 374
           H++
Sbjct: 397 HVL 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359489267|ref|XP_002274502.2| PREDICTED: squamosa promoter-binding-like protein 7-like [Vitis vinifera]

 Score =  345 bits (885), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 235/423 (55%), Positives = 274/423 (64%), Gaps = 73/423 (17%)

Query: 1   MEIGGNIFIREDTGN--SNNNNSNNLAWE--NMWALNNHSRFDL---GNSSSLYATAEIT 53
           ME GGN F     GN   N N+ ++LAW+  ++ A    SRFD    GNS +  A     
Sbjct: 1   MENGGNSF----NGNRGQNGNSGSHLAWDVRDLGA----SRFDWNCTGNSFNDDAATATA 52

Query: 54  STTHTS-EGNAAHALMFPH---------------------GQSLYAGDGSNLHPDPHLMC 91
           +   T  E    HALMFPH                      QSLY GDGS+LHPDPHLMC
Sbjct: 53  TDAPTQPEAGVGHALMFPHQATADVHHNQYYHQHNHHHHHQQSLYGGDGSHLHPDPHLMC 112

Query: 92  LKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPR 151
           LKLGKRHYFED+T       G S  K+G+PYY+  S+       S     +V S ATVPR
Sbjct: 113 LKLGKRHYFEDSTP------GISTDKRGRPYYSGGSSQSSATAVS-----VVGSPATVPR 161

Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
           CQVEGCHV L+NAKDYHRRHKVCE+HSKAPKV VLGLEQRFCQQCSRFH VSEFDDSKRS
Sbjct: 162 CQVEGCHVALVNAKDYHRRHKVCEMHSKAPKVVVLGLEQRFCQQCSRFHAVSEFDDSKRS 221

Query: 212 CRRRLAGHNERRRKSSHESLSRNSSQ-----------------GRALSLLSSKAESWVSS 254
           CRRRLAGHNERRRKSSH+S++RN SQ                 GRALSLLSSK++SWVSS
Sbjct: 222 CRRRLAGHNERRRKSSHDSVARNPSQAANKLMTGRFAYLSSPTGRALSLLSSKSDSWVSS 281

Query: 255 SDLSSRCSAALRELIAENRAAIVARHLILDGRDWHLH---LANDGETQMVCSTSMTSSHQ 311
           ++LS R SAALRELIAENRAAI+AR LILD RDWH H   + + G  Q    + M   HQ
Sbjct: 282 AELSLRSSAALRELIAENRAAILARQLILD-RDWHWHHHGMEDSGGEQPGSDSLMP--HQ 338

Query: 312 YQMLTEQHNWGRYQQTNTHVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGD 371
           +QM     +W R+ + N HVTLDLMQAP+   G LSVR ++K+EEEE   SE+W+SLEG 
Sbjct: 339 HQMFPGSRSWERFHEANGHVTLDLMQAPSSAFGLLSVREKSKEEEEEC--SELWNSLEGT 396

Query: 372 HLV 374
           H+ 
Sbjct: 397 HVT 399

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449431972|ref|XP_004133774.1| PREDICTED: squamosa promoter-binding-like protein 7-like [Cucumis sativus]

 Score =  328 bits (840), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 203/403 (50%), Positives = 236/403 (58%), Gaps = 101/403 (25%)

Query: 1   MEIGGNIFIREDTGNSNNNNSNNLAWENM------------WALNN-HSRFDLGNSSSLY 47
           MEI GN+      G+SN N + N++W N             W LN+ H  F       LY
Sbjct: 3   MEICGNLM-----GHSNPNAATNISWPNNTITNNNNNNNIIWELNSQHPHF-------LY 50

Query: 48  ATAEITSTTHTSEGNAAHALMFPHGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDATATS 107
           A+ E   TTH                          HPDPHLMCL LGKRHYFED+ A S
Sbjct: 51  ASGEHNPTTH-------------------------FHPDPHLMCLNLGKRHYFEDSNAPS 85

Query: 108 IGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDY 167
           +      + K+ KP                  P   T   TVPRCQVEGCHV L+NAKDY
Sbjct: 86  L-----ILGKRAKP------------------PFYAT---TVPRCQVEGCHVALVNAKDY 119

Query: 168 HRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS 227
           HRRH+VCE+HSKAPKV VLGL+QRFCQQCSRFHV+SEFDDSKRSCRRRLAGHNERRRKSS
Sbjct: 120 HRRHRVCEMHSKAPKVVVLGLDQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSS 179

Query: 228 HESLSRNSSQ-----------------GRALSLLSSKAESWVSSSDLSSRCSAALRELIA 270
           HES +RN +Q                 GRALSLLSSK ESW +SS+LS R SAALRELIA
Sbjct: 180 HES-ARNCTQAENKSMTNGIAYVPSPTGRALSLLSSKNESWANSSELSQRSSAALRELIA 238

Query: 271 ENRAAIVARHLILDGRDWHLHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQT-NT 329
           ENRAAI+AR LILD RDWH +     +              Y    +QH+W R  +   +
Sbjct: 239 ENRAAILARQLILD-RDWHPNHGGTDDFGGGGGVGFQQQGLY--CEQQHSWERMNENGGS 295

Query: 330 HVTLDLMQAPTEDLGFLSVRGETKDEEEEEECSEIWSSLEGDH 372
           HVTLDLMQAP+   G LSVRG++K  EE+EEC E+W+S   DH
Sbjct: 296 HVTLDLMQAPSSAFGLLSVRGKSK--EEDEECCELWNSF-NDH 335

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449478231|ref|XP_004155257.1| PREDICTED: protein AATF-like [Cucumis sativus]

 Score =  327 bits (837), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 184/324 (56%), Positives = 210/324 (64%), Gaps = 55/324 (16%)

Query: 71  HGQSLYAGDGSN----LHPDPHLMCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFA 126
           H   LYA    N     HPDPHLMCL LGKRHYFED+ A S+      + K+ KP     
Sbjct: 222 HPHFLYASGEHNPTTHFHPDPHLMCLNLGKRHYFEDSNAPSL-----ILGKRAKP----- 271

Query: 127 SAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVL 186
                        P   T   TVPRCQVEGCHV L+NAKDYHRRH+VCE+HSKAPKV VL
Sbjct: 272 -------------PFYAT---TVPRCQVEGCHVALVNAKDYHRRHRVCEMHSKAPKVVVL 315

Query: 187 GLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQ--------- 237
           GL+QRFCQQCSRFHV+SEFDDSKRSCRRRLAGHNERRRKSSHES +RN +Q         
Sbjct: 316 GLDQRFCQQCSRFHVISEFDDSKRSCRRRLAGHNERRRKSSHES-ARNCTQAENKSMTNG 374

Query: 238 --------GRALSLLSSKAESWVSSSDLSSRCSAALRELIAENRAAIVARHLILDGRDWH 289
                   GRALSLLSSK ESW +SS+LS R SAALRELIAENRAAI+AR LILD RDWH
Sbjct: 375 IAYVPSPTGRALSLLSSKNESWANSSELSQRSSAALRELIAENRAAILARQLILD-RDWH 433

Query: 290 LHLANDGETQMVCSTSMTSSHQYQMLTEQHNWGRYQQT-NTHVTLDLMQAPTEDLGFLSV 348
            +     +              Y    +QH+W R  +   +HVTLDLMQAP+   G LSV
Sbjct: 434 PNHGGTDDFGGGGGVGFQQQGLY--CEQQHSWERMNENGGSHVTLDLMQAPSSAFGLLSV 491

Query: 349 RGETKDEEEEEECSEIWSSLEGDH 372
           RG++K  EE+EEC E+W+S   DH
Sbjct: 492 RGKSK--EEDEECCELWNSF-NDH 512

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356498202|ref|XP_003517942.1| PREDICTED: squamosa promoter-binding-like protein 7-like [Glycine max]

 Score =  282 bits (722), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 180/329 (54%), Positives = 215/329 (65%), Gaps = 49/329 (14%)

Query: 1   MEIGGNIFI--REDTGNSNNNNSNNLAWENMWALNNHSR---------------FDLGNS 43
           ME GGN+F     D   + NNN N  AW++ W    +S                F L  +
Sbjct: 1   MEFGGNMFCLNNRDQNGNTNNNGNTFAWDS-WETPANSSNNNNNNNTSSRLVNAFHLPAA 59

Query: 44  SSLY-ATAEITSTTHTSEGNAAHALMFPHG----------QSLYAGDGSNLHPDPHLMCL 92
           S +  A   + +T H + G A+  +  P            Q  Y GDGS++HPDPHLMCL
Sbjct: 60  SRVAEADGSVPATRHEAAGLASALMFLPQNGGGMRHRQQQQHPYGGDGSHVHPDPHLMCL 119

Query: 93  KLGKRHYFED---------ATATSIGDRGFSMVKKGKPYYTFASAGGGGVGPSSSSPVLV 143
           KLGKRHYFED         A A ++G       K+GK Y    S+GGG     +S     
Sbjct: 120 KLGKRHYFEDTSGSGSGSVAAAATLGGGLVLGDKRGKGY----SSGGG-----ASVKAAG 170

Query: 144 TSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVS 203
            +  TVPRCQVEGCH+ L+NAKDYHRRHKVCE+HSKAPKV VLG+EQRFCQQCSRFHVVS
Sbjct: 171 LTAVTVPRCQVEGCHLALLNAKDYHRRHKVCEMHSKAPKVVVLGMEQRFCQQCSRFHVVS 230

Query: 204 EFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGR-ALSLLSSKAESWVSSSDLSSRCS 262
           EFD+SKRSCRRRLAGHNERRRKSSH+S++RNSS+G  ALSLLSS+++SW+S SDLS RCS
Sbjct: 231 EFDNSKRSCRRRLAGHNERRRKSSHDSVARNSSKGGCALSLLSSRSDSWLSPSDLSIRCS 290

Query: 263 AALRELIAENRAAIVARHLILDGRDWHLH 291
           AALRELIAENRAAI+AR  + D RDWH H
Sbjct: 291 AALRELIAENRAAIMARQFVSD-RDWHNH 318

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523080|ref|XP_003530170.1| PREDICTED: uncharacterized protein LOC100780159 [Glycine max]

 Score =  249 bits (635), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 163/303 (53%), Positives = 196/303 (64%), Gaps = 41/303 (13%)

Query: 28  NMWALNNHSRFDLGNS------------SSLYATAEITSTTHTS----EGNAAHALMFPH 71
           NM++LN H++ +  N+            SS  AT   ++T HTS    EG A  +    H
Sbjct: 7   NMFSLNTHTKEENENTPNNNNNIVNVWYSSWDATTTNSNTLHTSTTAAEGYAGGSHSH-H 65

Query: 72  GQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDAT-------ATSIGDRGFSMVKKGKPYYT 124
            Q LY G+G ++  DPHL CL LGKRHYFED T       AT +G+R   +   G   Y 
Sbjct: 66  HQQLYGGEGCHVQADPHLTCLHLGKRHYFEDVTTNGDVNNATPLGNR--HVCSGGGAGYV 123

Query: 125 FA----SAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKA 180
           FA       G   G  ++        A VPRCQVEGCHV L+NAK+YHRRH+VC++HSKA
Sbjct: 124 FAGNDKRGRGYYRGGGAAGGGKTAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDMHSKA 183

Query: 181 PKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSSQGRA 240
           PK  VLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH S++RNS QG A
Sbjct: 184 PKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSRQGCA 243

Query: 241 LSLLSSKA-----ESWVS-SSDLSSRCSAALRELIAENRAAIVAR---HLILDGRDW-HL 290
           LSLLSS +      +W+S  +D S+RCSAALRELIAENRAA++ R    L+ D R W HL
Sbjct: 244 LSLLSSGSGSRDHHNWLSHHADFSTRCSAALRELIAENRAALMTRQQQQLVYD-RVWPHL 302

Query: 291 HLA 293
            +A
Sbjct: 303 VVA 305

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255541148|ref|XP_002511638.1| Squamosa promoter-binding protein, putative [Ricinus communis] gi|223548818|gb|EEF50307.1| Squamosa promoter-binding protein, putative [Ricinus communis]

 Score =  242 bits (617), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 140/263 (53%), Positives = 168/263 (63%), Gaps = 36/263 (13%)

Query: 1   MEIGGNIF----IREDTGNSNNNNSNNLAWENMWALNNHSRFDLGNSSSLYATAEI---- 52
           ME GGN++    I  + G +++N    L W+ M+  N  SRFD  ++S+           
Sbjct: 1   MENGGNVYNNGHINRNKGQTSSNTI--LGWD-MFEPNT-SRFDWASTSNATTLFTTATAV 56

Query: 53  -TSTTHTSEGNAAHALMFPHGQ-------------SLYAGDG-SNLHPDPHLMCLKLGKR 97
            TS T  S  +  ++L+FPH               SLYAG+G S+LHPDPHLMCLKLGKR
Sbjct: 57  STSATGESTSSTTNSLIFPHQSLYYQHHDHHYQQLSLYAGEGLSHLHPDPHLMCLKLGKR 116

Query: 98  HYFEDATATSIGDR---GFSMVKKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQV 154
           HYFED       DR    FS+ K+GKPYY+   +          S     +   VPRCQV
Sbjct: 117 HYFEDTNTIPASDRDITSFSIGKRGKPYYSVVGS------QVGPSSSAAAAAVPVPRCQV 170

Query: 155 EGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRR 214
           EGCHV L+ AKDYHRRHKVCE+HSKA  V VLGLEQRFCQQCSRFHVVSEFDD+KRSCRR
Sbjct: 171 EGCHVALVKAKDYHRRHKVCEMHSKASNVIVLGLEQRFCQQCSRFHVVSEFDDAKRSCRR 230

Query: 215 RLAGHNERRRKSSHESLSRNSSQ 237
           RLAGHNERRRKS+H+S+SRNS Q
Sbjct: 231 RLAGHNERRRKSAHDSVSRNSCQ 253

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503313|ref|XP_003520455.1| PREDICTED: uncharacterized protein LOC100816072 [Glycine max]

 Score =  241 bits (616), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 139/237 (58%), Positives = 159/237 (67%), Gaps = 20/237 (8%)

Query: 71  HGQSLYAGDGSNLHPDPHLMCLKLGKRHYFEDAT-------ATSIGDRGF-------SMV 116
           H   LY G+G ++  DPHL CL LGKRHYFEDAT        TS+G+R          + 
Sbjct: 65  HHHQLYGGEGCHVQADPHLTCLHLGKRHYFEDATNGDDANNVTSLGNRHVCGGGGAGFVF 124

Query: 117 KKGKPYYTFASAGGGGVGPSSSSPVLVTSTATVPRCQVEGCHVPLINAKDYHRRHKVCEV 176
                       GGGG              A VPRCQVEGCHV L+NAK+YHRRH+VC+ 
Sbjct: 125 AGNDKRARGYYGGGGGGAGGGGGGGKSAPFAMVPRCQVEGCHVALVNAKEYHRRHRVCDK 184

Query: 177 HSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHESLSRNSS 236
           HSKAPK  VLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH S++RNS 
Sbjct: 185 HSKAPKAVVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHLSVTRNSR 244

Query: 237 QGRA--LSLLSSKAESWVS-SSDLSSRCSAALRELIAENRAAIVAR--HLILDGRDW 288
           QG A  L    S +E+W+S  +D S+RCSAALRELIAENRAA++ R   L+ D RDW
Sbjct: 245 QGCALSLLSSGSSSENWLSHHADFSTRCSAALRELIAENRAALITRQQQLVYD-RDW 300

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242073936|ref|XP_002446904.1| hypothetical protein SORBIDRAFT_06g024630 [Sorghum bicolor] gi|241938087|gb|EES11232.1| hypothetical protein SORBIDRAFT_06g024630 [Sorghum bicolor]

 Score =  194 bits (492), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 127/286 (44%), Positives = 155/286 (54%), Gaps = 64/286 (22%)

Query: 149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDS 208
           VPRCQVEGCHV L +AKDYHRRHKVCE HSKAP+V VLG EQRFCQQCSRFH +SEFD++
Sbjct: 137 VPRCQVEGCHVALADAKDYHRRHKVCEAHSKAPRVVVLGAEQRFCQQCSRFHAISEFDEA 196

Query: 209 KRSCRRRLAGHNERRRKS-SHESLSRNS----------------------SQGRALSLLS 245
           KRSCRRRLAGHNERRRKS + E+++R +                      S   ALSLLS
Sbjct: 197 KRSCRRRLAGHNERRRKSNASEAMARGAAHPHGVTAFGHGFLPPCGGLSGSSAGALSLLS 256

Query: 246 SK------AESW-VSSSDLSSRCSAALRELIAENRAAIVARHLILD------GRDWHLHL 292
           S       A  W V++SD+S+R SAAL +LIAENRAA++A     D      GR    H 
Sbjct: 257 SARSGATSAAPWQVTTSDISARSSAALDDLIAENRAALLAWQYFSDRSSSAPGR----HF 312

Query: 293 ANDGETQMVCSTSMTSSHQYQMLTEQH-----NWGRYQQTNT---HVTLDLMQ-----AP 339
           A+   T   C+               H       GR+        H TLDLMQ     AP
Sbjct: 313 ASSSSTATGCALPPADDQHAAASWRPHPHSGVGGGRHHMAPPGVWHTTLDLMQTASSAAP 372

Query: 340 TEDLG--FLSV--------RGETKDEEEEEECS-EIWSSLEGDHLV 374
               G  F  V        RG++KD ++   CS + W+   G  ++
Sbjct: 373 ATSTGAPFRPVPERAGARPRGKSKDGDDASGCSLDAWAPAGGARVL 418

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2059974	375	SPL9 "squamosa promoter bindin	0.237	0.237	0.7	6.9e-32
TAIR|locus:2015999	393	SPL11 "squamosa promoter-like	0.200	0.190	0.72	8.8e-32
TAIR|locus:2016014	396	SPL10 "squamosa promoter bindi	0.200	0.189	0.706	1.1e-31
TAIR|locus:2026428	405	AT1G69170 [Arabidopsis thalian	0.197	0.182	0.756	3.3e-30
TAIR|locus:2169248	419	SPL2 "squamosa promoter bindin	0.470	0.420	0.418	9.1e-29
TAIR|locus:2095793	354	SPL15 "squamosa promoter bindi	0.200	0.211	0.733	2e-28
TAIR|locus:2057656	131	SPL3 "squamosa promoter bindin	0.203	0.580	0.710	2.4e-28
TAIR|locus:504956101	333	SPL8 "squamosa promoter bindin	0.232	0.261	0.659	5e-28
TAIR|locus:2101402	927	SPL12 "squamosa promoter-bindi	0.227	0.091	0.635	9.1e-28
TAIR|locus:2009675	174	SPL4 "squamosa promoter bindin	0.243	0.522	0.648	1.3e-27

TAIR|locus:2059974 SPL9 "squamosa promoter binding protein-like 9" [Arabidopsis thaliana (taxid:3702)]

 Score = 323 (118.8 bits), Expect = 6.9e-32, Sum P(2) = 6.9e-32
 Identities = 63/90 (70%), Positives = 70/90 (77%)

Query:   151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
             RCQVEGC + L NAK Y+ RH+VC VHSK PKV V G+EQRFCQQCSRFH + EFD  KR
Sbjct:    73 RCQVEGCGMDLTNAKGYYSRHRVCGVHSKTPKVTVAGIEQRFCQQCSRFHQLPEFDLEKR 132

Query:   211 SCRRRLAGHNERRRKSSHESLSRNSSQ-GR 239
             SCRRRLAGHNERRRK    SLS  +S+ GR
Sbjct:   133 SCRRRLAGHNERRRKPQPASLSVLASRYGR 162

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0048366 "leaf development" evidence=IMP;IDA

GO:2000025 "regulation of leaf formation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2015999 SPL11 "squamosa promoter-like 11" [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 8.8e-32, Sum P(2) = 8.8e-32
 Identities = 54/75 (72%), Positives = 63/75 (84%)

Query:   151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
             RCQ++GC + L +AK YHR+HKVCE HSK PKV V GLE+RFCQQCSRFH VSEFD+ KR
Sbjct:   174 RCQIDGCELDLSSAKGYHRKHKVCEKHSKCPKVSVSGLERRFCQQCSRFHAVSEFDEKKR 233

Query:   211 SCRRRLAGHNERRRK 225
             SCR+RL+ HN RRRK
Sbjct:   234 SCRKRLSHHNARRRK 248

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2016014 SPL10 "squamosa promoter binding protein-like 10" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 1.1e-31, Sum P(2) = 1.1e-31
 Identities = 53/75 (70%), Positives = 64/75 (85%)

Query:   151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
             RCQ++GC + L ++KDYHR+H+VCE HSK PKV V GLE+RFCQQCSRFH VSEFD+ KR
Sbjct:   175 RCQIDGCELDLSSSKDYHRKHRVCETHSKCPKVVVSGLERRFCQQCSRFHAVSEFDEKKR 234

Query:   211 SCRRRLAGHNERRRK 225
             SCR+RL+ HN RRRK
Sbjct:   235 SCRKRLSHHNARRRK 249

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010358 "leaf shaping" evidence=IMP

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=IDA

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

TAIR|locus:2026428 AT1G69170 [Arabidopsis thaliana (taxid:3702)]

 Score = 308 (113.5 bits), Expect = 3.3e-30, Sum P(2) = 3.3e-30
 Identities = 56/74 (75%), Positives = 61/74 (82%)

Query:   152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
             CQV GC   L ++KDYH+RH+VCE HSK   V V GLEQRFCQQCSRFH +SEFDD KRS
Sbjct:   124 CQVYGCSKDLSSSKDYHKRHRVCEAHSKTSVVIVNGLEQRFCQQCSRFHFLSEFDDGKRS 183

Query:   212 CRRRLAGHNERRRK 225
             CRRRLAGHNERRRK
Sbjct:   184 CRRRLAGHNERRRK 197

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

TAIR|locus:2169248 SPL2 "squamosa promoter binding protein-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 320 (117.7 bits), Expect = 9.1e-29, P = 9.1e-29
 Identities = 82/196 (41%), Positives = 104/196 (53%)

Query:    35 HSRFDLGNSSSLYAT-AEITSTTHTSEGNAAHALMFPHG----QSLYAGDGSNLHPDPHL 89
             H+      S+S+ ++ AE+ +   TSE   +    F  G     SL    GS    DP +
Sbjct:    62 HAFSKSSKSTSISSSSAEVRTHNFTSETGESLPGEFAKGIDTSPSLELSFGSG---DP-V 117

Query:    90 MCLKLGKRHYFEDATATSIGDRGFSMVKKGKPYYTFXXXXXXXXXXXXXXXXXXXXXXXX 149
             + LKLGKR YFED        +G      G P                            
Sbjct:   118 LGLKLGKRTYFEDFWEVE-NAKGL-----GLPV-----TLASSSVSPVKKSKSIPQRLQT 166

Query:   150 XRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSK 209
               CQVEGC++ L +AKDYHR+H++CE HSK PKV V G+E+RFCQQCSRFH +SEFD+ K
Sbjct:   167 PHCQVEGCNLDLSSAKDYHRKHRICENHSKFPKVVVSGVERRFCQQCSRFHCLSEFDEKK 226

Query:   210 RSCRRRLAGHNERRRK 225
             RSCRRRL+ HN RRRK
Sbjct:   227 RSCRRRLSDHNARRRK 242

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=RCA;TAS

GO:0048510 "regulation of timing of transition from vegetative to reproductive phase" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2095793 SPL15 "squamosa promoter binding protein-like 15" [Arabidopsis thaliana (taxid:3702)]

 Score = 292 (107.8 bits), Expect = 2.0e-28, Sum P(2) = 2.0e-28
 Identities = 55/75 (73%), Positives = 60/75 (80%)

Query:   151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
             RCQVEGC + L N K Y+ RHKVC +HSK+ KV V GL QRFCQQCSRFH +SEFD  KR
Sbjct:    58 RCQVEGCRMDLSNVKAYYSRHKVCCIHSKSSKVIVSGLHQRFCQQCSRFHQLSEFDLEKR 117

Query:   211 SCRRRLAGHNERRRK 225
             SCRRRLA HNERRRK
Sbjct:   118 SCRRRLACHNERRRK 132

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IGI

GO:0008361 "regulation of cell size" evidence=IMP

GO:0042127 "regulation of cell proliferation" evidence=IMP

GO:0048653 "anther development" evidence=IGI

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2057656 SPL3 "squamosa promoter binding protein-like 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 316 (116.3 bits), Expect = 2.4e-28, P = 2.4e-28
 Identities = 54/76 (71%), Positives = 64/76 (84%)

Query:   152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
             CQVE C   +  AK YH+RHKVC+ H+KAP V++ GL QRFCQQCSRFH +SEFD++KRS
Sbjct:    54 CQVESCTADMSKAKQYHKRHKVCQFHAKAPHVRISGLHQRFCQQCSRFHALSEFDEAKRS 113

Query:   212 CRRRLAGHNERRRKSS 227
             CRRRLAGHNERRRKS+
Sbjct:   114 CRRRLAGHNERRRKST 129

GO:0003677 "DNA binding" evidence=IEA;IDA

GO:0005634 "nucleus" evidence=ISM;ISS;IDA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS;TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

GO:0010229 "inflorescence development" evidence=IMP

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP

GO:0009741 "response to brassinosteroid stimulus" evidence=RCA

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

GO:0009886 "post-embryonic morphogenesis" evidence=RCA

GO:0009909 "regulation of flower development" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

GO:0048507 "meristem development" evidence=RCA

GO:0009908 "flower development" evidence=TAS

GO:0009911 "positive regulation of flower development" evidence=IMP

TAIR|locus:504956101 SPL8 "squamosa promoter binding protein-like 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 58/88 (65%), Positives = 65/88 (73%)

Query:   151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
             RCQ EGC+  L +AK YHRRHKVCE HSKA  V   GL QRFCQQCSRFH++SEFD+ KR
Sbjct:   187 RCQAEGCNADLSHAKHYHRRHKVCEFHSKASTVVAAGLSQRFCQQCSRFHLLSEFDNGKR 246

Query:   211 SCRRRLAGHNERRRKSSHESLSRNSSQG 238
             SCR+RLA HN RRRK  H+S S     G
Sbjct:   247 SCRKRLADHNRRRRKC-HQSASATQDTG 273

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0009554 "megasporogenesis" evidence=IMP

GO:0009556 "microsporogenesis" evidence=IMP

GO:0048653 "anther development" evidence=IGI

TAIR|locus:2101402 SPL12 "squamosa promoter-binding protein-like 12" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 9.1e-28, Sum P(2) = 9.1e-28
 Identities = 54/85 (63%), Positives = 66/85 (77%)

Query:   152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
             CQV+ C   L   KDYHRRHKVCE+HSKA    V G+ QRFCQQCSRFHV+ EFD+ KRS
Sbjct:   127 CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFDEGKRS 186

Query:   212 CRRRLAGHNERRRKSSHESLSRNSS 236
             CRRRLAGHN+RRRK++ +++   +S
Sbjct:   187 CRRRLAGHNKRRRKANPDTIGNGTS 211

GO:0003677 "DNA binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM;IEA

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010413 "glucuronoxylan metabolic process" evidence=RCA

GO:0045492 "xylan biosynthetic process" evidence=RCA

TAIR|locus:2009675 SPL4 "squamosa promoter binding protein-like 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 59/91 (64%), Positives = 68/91 (74%)

Query:   152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
             CQV+ C   +  AK YHRRHKVCEVH+KA  V + GL QRFCQQCSRFH + EFD++KRS
Sbjct:    54 CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 113

Query:   212 CRRRLAGHNERRRKSSHESLSRNSSQGRALS 242
             CRRRLAGHNERRRKSS ES     S  R ++
Sbjct:   114 CRRRLAGHNERRRKSSGESTYGEGSGRRGIN 144

GO:0003677 "DNA binding" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM;IEA;ISS

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0010321 "regulation of vegetative phase change" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_II001303 hypothetical protein (398 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
pfam03110	79	pfam03110, SBP, SBP domain	3e-50

>gnl|CDD|190527 pfam03110, SBP, SBP domain

 Score =  162 bits (413), Expect = 3e-50
 Identities = 64/79 (81%), Positives = 68/79 (86%)

Query: 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
           RCQVEGC   L NAKDYHRRHKVCEVHSKAP V V GLEQRFCQQCSRFH++SEFD+ KR
Sbjct: 1   RCQVEGCGADLSNAKDYHRRHKVCEVHSKAPVVLVSGLEQRFCQQCSRFHLLSEFDEGKR 60

Query: 211 SCRRRLAGHNERRRKSSHE 229
           SCRRRLAGHNERRRK   +
Sbjct: 61  SCRRRLAGHNERRRKPQPD 79

SBP domains (for SQUAMOSA-pROMOTER BINDING PROTEIN) are found in plant proteins. It is a sequence specific DNA-binding domain. Members of family probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands. Length = 79

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PF03110	79	SBP: SBP domain; InterPro: IPR004333 The SBP plant	100.0

>PF03110 SBP: SBP domain; InterPro: IPR004333 The SBP plant protein domain is a sequence specific DNA-binding domain []

Probab=100.00  E-value=7.9e-40  Score=262.29  Aligned_cols=78  Identities=67%  Similarity=1.154  Sum_probs=63.2

Q ss_pred             ceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCCc
Q 017256          151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH  228 (374)
Q Consensus       151 ~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~~  228 (374)
                      +||||||++||+.+|.||+||||||.|+|||+|+++|+++||||||+|||+|+||||+|||||++|++||+|||++++
T Consensus         1 ~CqV~gC~~dL~~~k~Y~rR~rICe~H~ka~~V~~~G~~~RFCQQC~rfh~l~eFdg~kRSCr~~L~~h~~RRr~~~~   78 (79)
T PF03110_consen    1 RCQVDGCGADLSGAKEYHRRYRICEEHAKAPVVVVDGVEQRFCQQCGRFHPLSEFDGGKRSCRARLARHNERRRKRQQ   78 (79)
T ss_dssp             C-SSTTEE-EETS--SSCCCTT--HHHHTHSEEEETTEEEEE-TTTSSEEETTCB-SSTTSBSTTTT-SSS---S-S-
T ss_pred             CCcCCCCCcchhhhHHHhhccCcchhhcCCCeEEECChhHHHHHHHHcCCCHHHHcchhhhHHHHHHHHHHHhccccC
Confidence            599999999999999999999999999999999999999999999999999999999999999999999999999875

Proteins with this domain probably function as transcription factors involved in the control of early flower development. The domain contains 10 conserved cysteine and histidine residues that probably are zinc ligands.; GO: 0003677 DNA binding, 0005634 nucleus; PDB: 1UL4_A 1WJ0_A 1UL5_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
1ul4_A	94	Solution Structure Of The Dna-Binding Domain Of Squ		3e-25
1wj0_A	60	Solution Structure Of The Dna-Binding Domain Of Squ		4e-16
1ul5_A	88	Solution Structure Of The Dna-binding Domain Of Squ		8e-16

>pdb|1UL4|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 4 Length = 94

Iteration: 1
 Score =  112 bits (281), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 53/74 (71%), Positives = 60/74 (81%)
Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
           CQV+ C   +  AK YHRRHKVCEVH+KA  V + GL QRFCQQCSRFH + EFD++KRS
Sbjct: 11  CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 70
Query: 212 CRRRLAGHNERRRK 225
           CRRRLAGHNERRRK
Sbjct: 71  CRRRLAGHNERRRK 84

>pdb|1WJ0|A Chain A, Solution Structure Of The Dna-Binding Domain Of Squamosa Promoter Binding Protein-Like 12 Lacking The Second Zinc- Binding Site Length = 60

Iteration: 1
 Score = 82.4 bits (202), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 37/55 (67%), Positives = 41/55 (74%)
Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
           CQV+ C   L   KDYHRRHKVCE+HSKA    V G+ QRFCQQCSRFHV+ EFD
Sbjct: 6   CQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

>pdb|1UL5|A Chain A, Solution Structure Of The Dna-binding Domain Of Squamosa Promoter Binding Protein-like 7 Length = 88

Iteration: 1
 Score = 81.3 bits (199), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 35/75 (46%), Positives = 50/75 (66%)
Query: 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKR 210
           RCQV  C   +   K YH+RH+VC   + A  V + G  +R+CQQC +FH++ +FD+ KR
Sbjct: 5   RCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKR 64
Query: 211 SCRRRLAGHNERRRK 225
           SCRR+L  HN RR++
Sbjct: 65  SCRRKLERHNNRRKR 79

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	3e-38
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	2e-37
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	3e-32

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 94

 Score =  131 bits (331), Expect = 3e-38
 Identities = 57/86 (66%), Positives = 67/86 (77%)

Query: 145 STATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSE 204
            ++ +  CQV+ C   +  AK YHRRHKVCEVH+KA  V + GL QRFCQQCSRFH + E
Sbjct: 4   GSSGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQE 63

Query: 205 FDDSKRSCRRRLAGHNERRRKSSHES 230
           FD++KRSCRRRLAGHNERRRKSS ES
Sbjct: 64  FDEAKRSCRRRLAGHNERRRKSSGES 89

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 88

 Score =  129 bits (325), Expect = 2e-37
 Identities = 36/84 (42%), Positives = 53/84 (63%)

Query: 147 ATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
            +V RCQV  C   +   K YH+RH+VC   + A  V + G  +R+CQQC +FH++ +FD
Sbjct: 1   GSVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFD 60

Query: 207 DSKRSCRRRLAGHNERRRKSSHES 230
           + KRSCRR+L  HN RR++   + 
Sbjct: 61  EGKRSCRRKLERHNNRRKRKPVDK 84

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1 Length = 60

 Score =  114 bits (287), Expect = 3e-32
 Identities = 37/57 (64%), Positives = 41/57 (71%)

Query: 150 PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
             CQV+ C   L   KDYHRRHKVCE+HSKA    V G+ QRFCQQCSRFHV+ EFD
Sbjct: 4   ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 60

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
1ul4_A	94	SPL4, squamosa promoter binding protein-like 4; tr	100.0
1ul5_A	88	SPL7, squamosa promoter binding protein-like 7; tr	100.0
1wj0_A	60	Squamosa promoter-binding protein-like 12; DNA-bin	99.97

>1ul4_A SPL4, squamosa promoter binding protein-like 4; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=6e-43  Score=287.16  Aligned_cols=87  Identities=66%  Similarity=1.054  Sum_probs=80.4

Q ss_pred             CCCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCC
Q 017256          147 ATVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKS  226 (374)
Q Consensus       147 ~~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~  226 (374)
                      .+.++||||||.+||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||+
T Consensus         6 ~~~~~CqV~GC~~dL~~~k~Y~rR~rvCe~H~ka~~V~~~G~~~RFCQQCsrFH~L~eFD~~kRSCR~rL~~hn~RRRk~   85 (94)
T 1ul4_A            6 SGLRLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKS   85 (94)
T ss_dssp             --CCCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSC
T ss_pred             CCCCceecCCCCcchhhHHHHHHhhhhhHHHhcCCEEEECChhHHHHHHHhccCCHHHhccccchHHHHHHHHHHHhccC
Confidence            36889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Ccccccc
Q 017256          227 SHESLSR  233 (374)
Q Consensus       227 ~~d~~~~  233 (374)
                      ++|+.+.
T Consensus        86 ~~~~~~~   92 (94)
T 1ul4_A           86 SGESGPS   92 (94)
T ss_dssp             CCC----
T ss_pred             CCCcCCC
Confidence            9998753

>1ul5_A SPL7, squamosa promoter binding protein-like 7; transcription factor, SBP, flower development, DNA binding protein, structural genomics; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=100.00  E-value=4.7e-42  Score=279.00  Aligned_cols=84  Identities=43%  Similarity=0.882  Sum_probs=80.3

Q ss_pred             CCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCC
Q 017256          148 TVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSS  227 (374)
Q Consensus       148 ~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~  227 (374)
                      ..++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||+.|||||+||++||+||||++
T Consensus         2 ~~~~CqV~GC~~dLs~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQC~rFH~L~eFD~~kRSCR~rL~~hn~RRR~~~   81 (88)
T 1ul5_A            2 SVARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKP   81 (88)
T ss_dssp             -CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCS
T ss_pred             CCCeeecCCCCCChhHhhHHHhhccccHHHcCCCEEEECCEeeHHHHHhccccChhhhccccchHHHHHHHHHHHhccCC
Confidence            36899999999999999999999999999999999999999999999999999999999999999999999999999888


Q ss_pred             cccc
Q 017256          228 HESL  231 (374)
Q Consensus       228 ~d~~  231 (374)
                      +++.
T Consensus        82 ~~~~   85 (88)
T 1ul5_A           82 VDKG   85 (88)
T ss_dssp             CSSC
T ss_pred             ccCC
Confidence            7763

>1wj0_A Squamosa promoter-binding protein-like 12; DNA-binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.72.1.1

Probab=99.97  E-value=1.8e-32  Score=209.47  Aligned_cols=59  Identities=63%  Similarity=1.094  Sum_probs=57.2

Q ss_pred             CCCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccc
Q 017256          148 TVPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD  206 (374)
Q Consensus       148 ~~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD  206 (374)
                      +.++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||
T Consensus         2 ~~~~CqV~gC~~dl~~~k~Y~rR~rvCe~H~ka~~v~~~G~~~RFCQQCsrFH~L~eFD   60 (60)
T 1wj0_A            2 SAICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   60 (60)
T ss_dssp             -CEECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             CCceeecCCCCcChhHhHHHhhccccChhHcCCCEEEECCEEEehhhhccCccCcccCC
Confidence            46899999999999999999999999999999999999999999999999999999998

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d1ul5a_	86	g.72.1.1 (A:) Squamosa promoter binding protein-li	1e-45
d1ul4a_	81	g.72.1.1 (A:) Squamosa promoter binding protein-li	2e-43
d1wj0a_	58	g.72.1.1 (A:) Squamosa-promoter binding-like prote	1e-30

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 86

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  149 bits (378), Expect = 1e-45
 Identities = 36/82 (43%), Positives = 52/82 (63%)

Query: 149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDS 208
           V RCQV  C   +   K YH+RH+VC   + A  V + G  +R+CQQC +FH++ +FD+ 
Sbjct: 1   VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEG 60

Query: 209 KRSCRRRLAGHNERRRKSSHES 230
           KRSCRR+L  HN RR++   + 
Sbjct: 61  KRSCRRKLERHNNRRKRKPVDK 82

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 81

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  143 bits (362), Expect = 2e-43
 Identities = 56/78 (71%), Positives = 63/78 (80%)

Query: 152 CQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRS 211
           CQV+ C   +  AK YHRRHKVCEVH+KA  V + GL QRFCQQCSRFH + EFD++KRS
Sbjct: 4   CQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRS 63

Query: 212 CRRRLAGHNERRRKSSHE 229
           CRRRLAGHNERRRKSS E
Sbjct: 64  CRRRLAGHNERRRKSSGE 81

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} Length = 58

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

 Score =  109 bits (274), Expect = 1e-30
 Identities = 37/56 (66%), Positives = 41/56 (73%)

Query: 151 RCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD 206
            CQV+ C   L   KDYHRRHKVCE+HSKA    V G+ QRFCQQCSRFHV+ EFD
Sbjct: 3   CCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD 58

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d1ul5a_	86	Squamosa promoter binding protein-like 7, DNA-bind	100.0
d1ul4a_	81	Squamosa promoter binding protein-like 4, DNA-bind	100.0
d1wj0a_	58	Squamosa-promoter binding-like protein 12, DNA-bin	99.97

>d1ul5a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 7, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 7, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=2.7e-42  Score=277.72  Aligned_cols=84  Identities=43%  Similarity=0.878  Sum_probs=81.1

Q ss_pred             CCceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCCc
Q 017256          149 VPRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSH  228 (374)
Q Consensus       149 ~p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~~  228 (374)
                      .++||||||++||+.+|+||+||||||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++
T Consensus         1 ~~rCqV~gC~~dls~~k~Y~rRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~   80 (86)
T d1ul5a_           1 VARCQVPDCEADISELKGYHKRHRVCLRCATASFVVLDGENKRYCQQCGKFHLLPDFDEGKRSCRRKLERHNNRRKRKPV   80 (86)
T ss_dssp             CCSCEETTEECCCSSCCSSSGGGTCCHHHHHHSEEEETTEEEEECTTTSSEEEGGGBCSSTTSBSSSCCCSSSCCCCCSC
T ss_pred             CCeeeeCCCcchhhhCHHhhhhhHHHHHhcCCCeEEECCeechHHHHhccccChhhhccccccHHHHHHHHHHHhccCCc
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             cccc
Q 017256          229 ESLS  232 (374)
Q Consensus       229 d~~~  232 (374)
                      |+..
T Consensus        81 ~~~g   84 (86)
T d1ul5a_          81 DKGG   84 (86)
T ss_dssp             SSCC
T ss_pred             cccc
Confidence            8653

>d1ul4a_ g.72.1.1 (A:) Squamosa promoter binding protein-like 4, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa promoter binding protein-like 4, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=100.00  E-value=4.1e-42  Score=274.09  Aligned_cols=80  Identities=70%  Similarity=1.147  Sum_probs=78.4

Q ss_pred             CceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccccccchHHHHHhhHHHhhcCCCcc
Q 017256          150 PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFDDSKRSCRRRLAGHNERRRKSSHE  229 (374)
Q Consensus       150 p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFDg~KRSCR~rLarHN~RRRk~~~d  229 (374)
                      ..||||||++||+.+|+||+||+|||.|+|||+|+|+|+++||||||+|||+|+|||++|||||+||++||+||||+++|
T Consensus         2 ~~CqVdgC~~dls~~k~YhrRhrvCe~H~ka~~V~v~G~~~RfCQqC~rFH~L~eFD~~krSCr~rL~~hn~RRRk~~~~   81 (81)
T d1ul4a_           2 RLCQVDRCTADMKEAKLYHRRHKVCEVHAKASSVFLSGLNQRFCQQCSRFHDLQEFDEAKRSCRRRLAGHNERRRKSSGE   81 (81)
T ss_dssp             CCCSSTTCCCCCTTCCHHHHHTTCCHHHHTCSCEEETTEEEEECTTTSSEEETTTCCSSCCSCSTTTTCCCCCCCSCCCC
T ss_pred             CeeeeCCCcchHHhhHHhhhhhHHHHHHcCCCeEEECCeechHHHHhcccccHHHhccccccHHHHHHHHhHHhccCCCC
Confidence            57999999999999999999999999999999999999999999999999999999999999999999999999999875

>d1wj0a_ g.72.1.1 (A:) Squamosa-promoter binding-like protein 12, DNA-binding domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: SBT domain
superfamily: SBT domain
family: SBT domain
domain: Squamosa-promoter binding-like protein 12, DNA-binding domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.97  E-value=1.9e-32  Score=206.69  Aligned_cols=57  Identities=65%  Similarity=1.123  Sum_probs=55.9

Q ss_pred             CceeecCCCccccCCccccccccchhhhcCCCeEeECCchhhHHHHhhccccccccc
Q 017256          150 PRCQVEGCHVPLINAKDYHRRHKVCEVHSKAPKVKVLGLEQRFCQQCSRFHVVSEFD  206 (374)
Q Consensus       150 p~CQVdGC~~dLs~aK~YhrRhRVCe~HsKAp~Vvv~G~~qRFCQQCsRFH~LsEFD  206 (374)
                      .+||||||++||+.+|+|||||||||.|+|||+|+|+|++|||||||+|||+|+|||
T Consensus         2 ~~CqV~gC~~dl~~~k~YhrRhkvCe~H~ka~~V~v~G~~~RFCQQCsrFH~L~eFD   58 (58)
T d1wj0a_           2 ICCQVDNCGADLSKVKDYHRRHKVCEIHSKATTALVGGIMQRFCQQCSRFHVLEEFD   58 (58)
T ss_dssp             EECSSTTCCCEETSCCSSTTTTTCCHHHHTCSCEEETTEEECCCSSSCSCCBTTSCC
T ss_pred             ceeEeCCcchhhhhhHHhcchhhHHHHhcCCCeEEECCcccccccccCCcccccccC
Confidence            379999999999999999999999999999999999999999999999999999998