Citrus Sinensis ID: 017259

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCHRCGRNLYG
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcccEEEccccHHHHHHHHHHHHHHHHHHccccccccEEEEEEccccccHHHHHHHccccccccccccccccccEEEEcccHHHHHHHHHHccccEEEEEEcccccccccccccccHHHHHHHHHHHcccEEEEEcccccccccccHHHHcccccccHHHHHHHHccccccccEEEEccHHHHcccccccccccccccHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHccccEEEEcccccHHHEEEccccccccHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
HHHHHHHHccccccccccccccHHHHHHHHHHHHcccEEEEEccHHHHHHHHHHHHHHHHHHcccccccccEEEEEccccccccHHHHHccccHHHHcccccccccEEEEccccHHHHHHHcccccccEEEEEEcccEcccccEcccccHHHHHHHHHHHcccEEEEEcccccccccccccHHHHHcccccEEEEcHHHHccccccEEEEEcHHHHcccccccccccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHcccHHHcccHHHHEccccEEEEEEEccccccccHHHHHHHHHHcccEEEcccccEEEEccccEEcHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccc
Coil and Loop (DISEMBL)
MKALQEQAEKLTLSsrafyndkfPVFAERLTSMfgydmvlpmntgaEGVETALKLARKWGyvkkkfsiDEAIIVSCCGCFHGRTLAAISMSCdneairgfgpllpghlkvdfgDITALEKIFKESGDQIagflfepiqgeagviippdgyLKAVRDLCSKYNILMIADEIQSGLARSgrmlasdweevrpDMVILGKAlgggvipvsavladkevmlciqpgehgstfggnpLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEvrgrglfnavefdktalpvsAYDICLKMKergilakpthdtivrltpplsissnelQEGSKALHDVLeldlpkmrkpkpadapatpchrcgrnlyg
Flexible Loop (DISEMBL)
MKALQEQAEkltlssrafyndkFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFnavefdktalpvSAYDICLKMKERgilakpthdtivrlTPPLSISSNELQEGSKALHDVLELDLpkmrkpkpadapatpchrcgrnlyg
Low Complexity Region (SEG)
MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCHRCGRNLYG
Disordered region (IsUnstruct)
***************RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLT**************************************************
Disordered Region (DISOPRED)
MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE*********************CGRNL**
Disordered Region (DISEMBL)
********EKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM**********TPCHRCGRNLYG
Disordered Region (DISPRO)
MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP*********CHRC******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCHRCGRNLYG
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q9FNK4	475	Ornithine aminotransferas	yes	no	0.997	0.785	0.811	1e-180
Q10G56	473	Ornithine aminotransferas	yes	no	0.997	0.788	0.734	1e-166
Q54JP5	416	Probable ornithine aminot	yes	no	0.914	0.822	0.543	1e-113
Q9P7L5	438	Ornithine aminotransferas	yes	no	0.941	0.803	0.520	1e-103
Q92413	454	Ornithine aminotransferas	yes	no	0.933	0.768	0.494	1e-101
Q9VW26	431	Ornithine aminotransferas	yes	no	0.871	0.756	0.520	1e-100
P49724	432	Ornithine aminotransferas	N/A	no	0.877	0.759	0.529	7e-99
C4L2E7	400	Ornithine aminotransferas	yes	no	0.890	0.832	0.524	1e-98
C5D6R2	398	Ornithine aminotransferas	yes	no	0.863	0.811	0.544	2e-98
P60299	396	Ornithine aminotransferas	yes	no	0.895	0.845	0.526	5e-98

>sp|Q9FNK4|OAT_ARATH Ornithine aminotransferase, mitochondrial OS=Arabidopsis thaliana GN=DELTA-OAT PE=1 SV=1

 Score =  631 bits (1628), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 306/377 (81%), Positives = 339/377 (89%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           MKALQEQ EKLTLSSRAFYNDKFPVFAERLT+MFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 98  MKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMFGYDMVLPMNTGAEGVETALKLARKWG 157

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           + KK    DEAIIVSCCGCFHGRTLA +SMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct: 158 HEKKNIPKDEAIIVSCCGCFHGRTLAIVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 217

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGVIIPPDGYLKAVR+LC+KYN+LMIADE+QSGLARSG+M
Sbjct: 218 IFKEKGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGLARSGKM 277

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEE+RPDMVILGKALGGGVIPVSAVLADK+VML I+PG+HGSTFGGNPLASAVA+A
Sbjct: 278 LACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMA 337

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVI +EKL ERSA LGEELR  L +I++QFP Y+KEVRGRGLFNA+EF+  +L PVSA
Sbjct: 338 SLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSA 397

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL++GS+ALHDVLELDLP + K     
Sbjct: 398 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLELDLPNLLKINSGK 457

Query: 360 APA---TPCHRCGRNLY 373
            P    T C RCGRNLY
Sbjct: 458 TPVSHITECDRCGRNLY 474

Mediates degradation of arginine for nitrogen recycling. Plays a role in non-host disease resistance by regulating pyrroline-5-carboxylate metabolism-induced hypersensitive response.
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 6EC: .EC: 1EC: .EC: 1EC: 3

>sp|Q10G56|OAT_ORYSJ Ornithine aminotransferase, mitochondrial OS=Oryza sativa subsp. japonica GN=OAT PE=2 SV=1

 Score =  585 bits (1509), Expect = e-166,   Method: Compositional matrix adjust.
 Identities = 277/377 (73%), Positives = 322/377 (85%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL+EQAE+LTLSSRAFYNDKFP+FAE LTSMFGY+M+LPMNTGAEGVETA+KL RKWG
Sbjct: 97  LRALKEQAERLTLSSRAFYNDKFPIFAEYLTSMFGYEMMLPMNTGAEGVETAIKLVRKWG 156

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KKK   +EA+IVSCCGCFHGRTL  ISMSCDN+A RGFGPL+PGHLKVDFGD   LEK
Sbjct: 157 YEKKKIPKNEALIVSCCGCFHGRTLGVISMSCDNDATRGFGPLVPGHLKVDFGDTDGLEK 216

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFK+ G++I GFLFEPIQGEAGVIIPPDGYLKAVRDLCS++NILMIADEIQ+G+AR+G+M
Sbjct: 217 IFKDHGERICGFLFEPIQGEAGVIIPPDGYLKAVRDLCSRHNILMIADEIQTGIARTGKM 276

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWE +RPD+VILGKALG GV+PVSAVLADK++MLCI+PGEHGSTFGGNPLASAVA+A
Sbjct: 277 LACDWENIRPDVVILGKALGAGVVPVSAVLADKDIMLCIKPGEHGSTFGGNPLASAVAVA 336

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SL V+ DE L ER+A LG+E R  L K+QQ+FP  ++EVRGRGL NAV+    AL P SA
Sbjct: 337 SLKVVTDEGLVERAAKLGQEFRDQLQKVQQRFPQIIREVRGRGLLNAVDLSNEALSPASA 396

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR---KPK 356
           YDIC+K+KERG+LAKPTHDTI+RL PPLSIS  EL E SKA  DVLE DLP+++   K  
Sbjct: 397 YDICIKLKERGVLAKPTHDTIIRLAPPLSISPEELAEASKAFSDVLEHDLPQLQKQIKKT 456

Query: 357 PADAPATPCHRCGRNLY 373
            + A    C RCGR+LY
Sbjct: 457 ESAAEKQSCDRCGRDLY 473

Confers drought and oxidative stress tolerance mainly through enhancing ROS-scavenging capacity and Pro pre-accumulation.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q54JP5|OAT_DICDI Probable ornithine aminotransferase OS=Dictyostelium discoideum GN=oatA PE=3 SV=1

 Score =  409 bits (1051), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 188/346 (54%), Positives = 257/346 (74%), Gaps = 4/346 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL  QA+K  LSSRAFYN+ FP +A+ +T  FGY+MVLPMNTGAE VET++KLAR+WG
Sbjct: 71  VSALITQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMVLPMNTGAEAVETSIKLARRWG 130

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           YVKK  + D+AI++SC GCFHGRT+  ISMS D  +   +GPL+ G +K+D+     LE+
Sbjct: 131 YVKKGIAEDQAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEE 190

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +  +  D++ GF+ EPIQGEAGV++P +GYLK   +LC KYN+L++ADEIQ+GL R+GRM
Sbjct: 191 VLSQHADRVCGFIVEPIQGEAGVVVPDEGYLKKCYELCKKYNVLLVADEIQTGLCRTGRM 250

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           L SDW+ ++PD+V+LGKA+ GG++P+SAVL  K+VML I+PGEHGST+GG+PLASAVA+A
Sbjct: 251 LCSDWDGIKPDLVLLGKAISGGLLPISAVLGGKDVMLTIKPGEHGSTYGGSPLASAVAMA 310

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +LDV+RDE LAE +  LGE  R  +  I       ++ VRG+GL NA+  D     VSA+
Sbjct: 311 ALDVLRDENLAENAQKLGEHFRAQISNINHP---AIQLVRGKGLLNAIVIDPN-FTVSAW 366

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           DIC+K  E G+LAKPTHD I+RL PPL+I+  ++ +    +  V +
Sbjct: 367 DICIKFAENGLLAKPTHDNIIRLAPPLTITLEQIDQCVSIIKKVFD 412

Dictyostelium discoideum (taxid: 44689)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q9P7L5|OAT_SCHPO Ornithine aminotransferase car2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=car2 PE=2 SV=1

 Score =  374 bits (961), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 192/369 (52%), Positives = 260/369 (70%), Gaps = 17/369 (4%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL EQA+++TLSSRAFYNDKF  FA+ +T  FGY+MV+PMNTGAE VETA KLAR WG
Sbjct: 71  IEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWG 130

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-------GHLKV-DF 112
           Y  KK   DEAII+SC   FHGRT+  ISMS D +A   +GP LP       G  +V  +
Sbjct: 131 YKAKKIPTDEAIILSCVDNFHGRTMGIISMSTDPDARDNYGPYLPNVGPKISGADRVLRY 190

Query: 113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
            +I  L+      G ++A FL EPIQGEAGV++P DGYL+    LC  +N+L IADE+Q+
Sbjct: 191 NNIEDLKYYLDTFGPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQT 250

Query: 173 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 232
           G+AR+G+ML  +   V+PD+VILGKA+ GGV PVSAVL+ +E+ML  +PG HGST+GGNP
Sbjct: 251 GVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNP 310

Query: 233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 292
           L +AV+IA+L+V+++EKL ER+A LGE+ R  L + +      V++VRGRGL NAV  D+
Sbjct: 311 LGAAVSIAALEVVKEEKLTERAAVLGEKFRTALIECKSPI---VQKVRGRGLLNAVVIDE 367

Query: 293 TALP-VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVLEL 347
           +     +A+D+CL M+ RG+LAKPTH  I+R +PPL I+  +L +G     K+L+D+  +
Sbjct: 368 SKTNGRTAWDLCLIMRSRGVLAKPTHGNIIRFSPPLVITEEDLMKGIEVIKKSLNDLPTI 427

Query: 348 DL-PKMRKP 355
           D+ P   KP
Sbjct: 428 DMTPYAEKP 436

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q92413|OAT_EMENI Ornithine aminotransferase OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=otaA PE=3 SV=2

 Score =  370 bits (949), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 179/362 (49%), Positives = 252/362 (69%), Gaps = 13/362 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL +QA +LTLSSRAFYND FP FAE +T  FG+DMVLPMNTGAE VET +K+ARKWG
Sbjct: 76  VAALVDQASRLTLSSRAFYNDVFPKFAEMVTKYFGFDMVLPMNTGAEAVETGIKIARKWG 135

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDF 112
           Y  K    +EAII+S    FHGRT+AAIS+S D E+   +GP +P            + +
Sbjct: 136 YKVKGIPENEAIILSAENNFHGRTMAAISLSSDPESRENYGPYVPNIGCTIPGTEKPITY 195

Query: 113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
            D  AL + F+++G  +A FL EPIQGEAG+I+P D YL+  R LC ++N+L+I DEIQ+
Sbjct: 196 NDKAALREAFEKAGSNLAAFLVEPIQGEAGIIVPDDDYLQLARSLCDQHNVLLICDEIQT 255

Query: 173 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 232
           G+AR+G++L  +W  ++PDMV+LGKA+ GG+ PVS VL  K+VML ++PG HGST+GGNP
Sbjct: 256 GIARTGKLLCHEWSGIKPDMVLLGKAISGGMYPVSCVLGRKDVMLTVEPGTHGSTYGGNP 315

Query: 233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 292
           LA AVAI +L+V+++E + ER+  LG+  R  L  IQ      ++ VRG+GL NA+  D+
Sbjct: 316 LACAVAIRALEVVQEENMVERAEKLGQAFRSGLEAIQNPI---IQTVRGKGLLNAIVIDE 372

Query: 293 TALP-VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351
           +     +A+D+C+ MKE+G+LAKPTH  I+RL PPL I+  E+ +  + +   +  +LP 
Sbjct: 373 SKTNGHTAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIAKALEIIKAAVA-ELPN 431

Query: 352 MR 353
           ++
Sbjct: 432 LK 433

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|Q9VW26|OAT_DROME Ornithine aminotransferase, mitochondrial OS=Drosophila melanogaster GN=Oat PE=2 SV=1

 Score =  363 bits (933), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 174/334 (52%), Positives = 246/334 (73%), Gaps = 8/334 (2%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
           AL  QA KL L+SRAFY+D    + E +T +FG+D VLPMNTG EG ETA KLARKWGY+
Sbjct: 94  ALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKWGYL 153

Query: 63  KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 122
           +KK   ++A I+     F GRTL+A+S S D  +  GFGP +PG   +++ +++ALE+  
Sbjct: 154 EKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFELIEYDNVSALEESL 213

Query: 123 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 182
           K+    +  F+ EPIQGEAGV++P DGYLK VR+LC+KYN+L IADE+Q+GLAR+G++LA
Sbjct: 214 KDP--NVCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLA 271

Query: 183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 242
            D+E+V+PD++ILGKAL GG+ PVSAVL + +VMLCI+PGEHGST+GGNPL   VA+A+L
Sbjct: 272 VDYEQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAAL 331

Query: 243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 302
           +V+++EKLAE +  +G+ LR  L  + +   + V  VRG+GL NA+  ++      A+++
Sbjct: 332 EVLQEEKLAENAFKMGDLLRNELSTLPK---DVVSVVRGKGLLNAIVINQK---FDAWEV 385

Query: 303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
           CL++KE G+LAKPTH  I+R  PPL I+  +++E
Sbjct: 386 CLRLKENGLLAKPTHGDIIRFAPPLVINETQMRE 419

Drosophila melanogaster (taxid: 7227)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P49724|OAT_DROAN Ornithine aminotransferase, mitochondrial OS=Drosophila ananassae GN=Oat PE=1 SV=1

 Score =  360 bits (925), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 178/336 (52%), Positives = 244/336 (72%), Gaps = 8/336 (2%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KAL EQA KL L+SRAFY+D    + E +T +FG+D VLPMNTG EG ETA KLARKWG
Sbjct: 93  VKALTEQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKWG 152

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y++KK   ++A I+     F GRTL+A+S S D  +  GFGP +PG   +++ ++TALE+
Sbjct: 153 YLQKKIPENQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFELIEYDNVTALEE 212

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             K+    +  F+ EPIQGE GV++P DGYLK VR+LCSK N+L IADE+Q+GLAR+G++
Sbjct: 213 ALKDP--NVCAFMVEPIQGERGVVVPSDGYLKKVRELCSKNNVLWIADEVQTGLARTGKL 270

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA ++E+V+PD++ILGKAL GG+ PVSAVL +  VMLCI+PGEHGST+GGNPL   VA+A
Sbjct: 271 LAVNYEDVQPDILILGKALSGGLYPVSAVLCNDPVMLCIKPGEHGSTYGGNPLGCRVAMA 330

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+++EKLAE +  +GE LR  L  + +   + V  VRG+GL NA+  ++      A+
Sbjct: 331 ALEVLQEEKLAENAFKMGELLRSELSTLPK---DVVSVVRGKGLLNAIVINEK---YDAW 384

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
            +CLK+KE G+LAKPTH  I+R  PPL I +  L+E
Sbjct: 385 KVCLKLKENGLLAKPTHGDIIRFAPPLVIMNPRLRE 420

Drosophila ananassae (taxid: 7217)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|C4L2E7|OAT_EXISA Ornithine aminotransferase OS=Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) GN=rocD PE=3 SV=1

 Score =  360 bits (924), Expect = 1e-98,   Method: Compositional matrix adjust.
 Identities = 181/345 (52%), Positives = 238/345 (68%), Gaps = 12/345 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL++QA+K+TL+SRAFYND+   F +++ ++    MVLPMNTGAE VETA+K AR+W 
Sbjct: 62  IQALKDQADKITLTSRAFYNDQLGRFYDKVVTLTKKQMVLPMNTGAEAVETAVKTARRWA 121

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A I+ C G FHGRT+AA+SMS + E  RGFGPLLPG   V +GDI A E 
Sbjct: 122 YDVKGIP-GQAEIIVCSGNFHGRTMAAVSMSTEAEYQRGFGPLLPGFKVVPYGDIDAFEA 180

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
              E+    A F+ EPIQGEAG+IIPP GYLK   +LC ++N+L +ADEIQSGL RSG+ 
Sbjct: 181 AITEN---TAAFIVEPIQGEAGIIIPPAGYLKRASELCKEHNVLFVADEIQSGLGRSGKW 237

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A +WE+V PDM ILGKALGGGV P+S V AD+E++    PG HGSTFGGNPLASAV++A
Sbjct: 238 FAIEWEDVTPDMYILGKALGGGVFPISCVAADQEILSVFNPGSHGSTFGGNPLASAVSVA 297

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E L ERS  LG      L  I       +++VRGRGLF  +E  ++A P    
Sbjct: 298 ALEVLEEENLPERSLELGTYFMDRLKSIDNPM---IRDVRGRGLFIGIELTESARPY--- 351

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             C  +KERG+L K TH+T++RL PPL I+  EL +  +A+  VL
Sbjct: 352 --CEALKERGLLCKETHETVIRLAPPLVITKEELDQAFEAIEAVL 394

Catalyzes the interconversion of ornithine to glutamate semialdehyde.

Exiguobacterium sp. (strain ATCC BAA-1283 / AT1b) (taxid: 360911)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|C5D6R2|OAT_GEOSW Ornithine aminotransferase OS=Geobacillus sp. (strain WCH70) GN=rocD PE=3 SV=1

 Score =  359 bits (921), Expect = 2e-98,   Method: Compositional matrix adjust.
 Identities = 182/334 (54%), Positives = 235/334 (70%), Gaps = 11/334 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL+EQA+++TL+SRAF+ND+   + E++  + G DMVLPMNTGAE VETA K AR+W 
Sbjct: 62  IQALKEQADRITLTSRAFHNDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAFKAARRWA 121

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K    D+A I+ C   FHGRT+AA+SMS   E  RGFGP+LPG   + +GD+ AL+K
Sbjct: 122 YDVKGVEKDKAEIIVCENNFHGRTMAAVSMSSSEEYKRGFGPMLPGIKIIPYGDVEALKK 181

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
               +    A F+FEPIQGEAG+ IPP+G+LK   ++C + N+L IADEIQSGL RSG+M
Sbjct: 182 AITPN---TAAFIFEPIQGEAGINIPPEGFLKEAYNVCKENNVLYIADEIQSGLGRSGKM 238

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A DWE V PDM ILGKALGGGV P+S V A+++++    PG HGSTFGGNPLA AV+IA
Sbjct: 239 FACDWENVVPDMYILGKALGGGVFPISCVAANRDILGVFNPGSHGSTFGGNPLACAVSIA 298

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +LDVI +EKL ERS  LG    + L +IQ   P+ +KEVRGRGLF  VE   +A P    
Sbjct: 299 ALDVIIEEKLPERSLELGNYFIEKLREIQH--PD-IKEVRGRGLFIGVELHTSARPY--- 352

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 334
             C K+K+ G+L K THDT++R  PPL I+  EL
Sbjct: 353 --CEKLKQEGLLCKETHDTVIRFAPPLVITKEEL 384

Catalyzes the interconversion of ornithine to glutamate semialdehyde.

Geobacillus sp. (strain WCH70) (taxid: 471223)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

>sp|P60299|OAT2_STAAW Ornithine aminotransferase 2 OS=Staphylococcus aureus (strain MW2) GN=rocD2 PE=3 SV=1

 Score =  358 bits (918), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 182/346 (52%), Positives = 242/346 (69%), Gaps = 11/346 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL++QA+K+TL SRAF++D    + E++  + G D  LPMNTGAE VETALK AR+W 
Sbjct: 62  IQALKDQADKVTLVSRAFHSDNLGEWYEKICKLAGKDKALPMNTGAEAVETALKAARRWA 121

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K    ++A I++  G FHGRT+A +S+S + E  RG+GPLL G  KVDFGD+ AL+ 
Sbjct: 122 YDVKGIEPNKAEIIAFNGNFHGRTMAPVSLSSEAEYQRGYGPLLDGFRKVDFGDVDALKA 181

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
              E+    A  L EPIQGEAG+ IPP+GYLKA+R+LC ++N+L IADEIQ+GL RSG++
Sbjct: 182 AINEN---TAAVLVEPIQGEAGINIPPEGYLKAIRELCDEHNVLFIADEIQAGLGRSGKL 238

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A+DW+ V+PD+ ILGKALGGGV P+S VLADKEV+    PG HGSTFGGNPLA A +IA
Sbjct: 239 FATDWDNVKPDVYILGKALGGGVFPISVVLADKEVLDVFTPGSHGSTFGGNPLACAASIA 298

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +LDVI DE L  RS  LG+  ++ L +I    P+ +KEVRGRGLF  VE +++A P    
Sbjct: 299 ALDVIVDEDLPGRSLELGDYFKEQLKQIDH--PS-IKEVRGRGLFIGVELNESARPY--- 352

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             C  +KE G+L K THDT++R  PPL I+  EL    + +  V +
Sbjct: 353 --CEALKEEGLLCKETHDTVIRFAPPLIITKEELDLALEKIRHVFQ 396

Catalyzes the interconversion of ornithine to glutamate semialdehyde.

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 2

EC: .

EC: 6

EC: .

EC: 1

EC: .

EC: 1

EC: 3

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
255557233	473	ornithine aminotransferase, putative [Ri	1.0	0.790	0.838	0.0
224116376	469	predicted protein [Populus trichocarpa]	0.991	0.791	0.844	0.0
346980456	478	ornithine aminotransferase [Malus hupehe	0.997	0.780	0.827	0.0
304650830	477	ornithine aminotransferase [Nicotiana ta	1.0	0.784	0.820	0.0
449439181	473	PREDICTED: probable ornithine aminotrans	1.0	0.790	0.820	1e-180
15237392	475	ornithine-delta-aminotransferase [Arabid	0.997	0.785	0.811	1e-178
297791071	475	delta-OAT [Arabidopsis lyrata subsp. lyr	0.997	0.785	0.809	1e-178
157890950	477	ornithine-oxo-acid transaminase [Brassic	0.997	0.781	0.798	1e-176
225443914	466	PREDICTED: probable ornithine aminotrans	0.994	0.798	0.803	1e-175
169665583	476	ornithine aminotransferase [Brassica nap	0.997	0.783	0.787	1e-174

>gi|255557233|ref|XP_002519647.1| ornithine aminotransferase, putative [Ricinus communis] gi|223541064|gb|EEF42620.1| ornithine aminotransferase, putative [Ricinus communis]

 Score =  659 bits (1699), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 317/378 (83%), Positives = 345/378 (91%), Gaps = 4/378 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           MKAL++QAEKLTLSSRAFYND+FP+FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 93  MKALKDQAEKLTLSSRAFYNDRFPLFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 152

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KKK + DEAIIVSCCGCFHGRT+A ISMSCDNEA RGFGPLLPGH KVDFGD  ALEK
Sbjct: 153 YEKKKITKDEAIIVSCCGCFHGRTIAVISMSCDNEATRGFGPLLPGHFKVDFGDEVALEK 212

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGV+IPPDGYLKAVRDLCSKYN+LMIADEIQ+GLAR+G+M
Sbjct: 213 IFKERGDRIAGFLFEPIQGEAGVVIPPDGYLKAVRDLCSKYNVLMIADEIQTGLARTGKM 272

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWE+VRPD+VILGKALGGGVIPVSAVLADK+VMLCIQPGEHGSTFGGNPLASAVA+A
Sbjct: 273 LACDWEQVRPDVVILGKALGGGVIPVSAVLADKDVMLCIQPGEHGSTFGGNPLASAVAVA 332

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDV+ DE LAERSA LGEELR  L K+QQQFP+Y+KEVRGRGLFNAVEFD  AL P+SA
Sbjct: 333 SLDVVIDEGLAERSAQLGEELRDQLLKVQQQFPDYIKEVRGRGLFNAVEFDSKALSPISA 392

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKP-- 357
           YDICLK+KERGILAKPTHDTIVRLTPPLS+S +ELQEGSKAL +VLE DLP + K KP  
Sbjct: 393 YDICLKLKERGILAKPTHDTIVRLTPPLSMSLDELQEGSKALREVLEFDLPNLLKDKPEK 452

Query: 358 -ADAPATPCHRCGRNLYG 374
            + A +T C RCGRNLY 
Sbjct: 453 ASSAASTSCDRCGRNLYA 470

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224116376|ref|XP_002317282.1| predicted protein [Populus trichocarpa] gi|222860347|gb|EEE97894.1| predicted protein [Populus trichocarpa]

 Score =  655 bits (1690), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 316/374 (84%), Positives = 345/374 (92%), Gaps = 3/374 (0%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           MKALQEQAEKLTLSSRAFYND+FPVFAE LT+MFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 95  MKALQEQAEKLTLSSRAFYNDRFPVFAEHLTNMFGYDMVLPMNTGAEGVETALKLARKWG 154

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KKK  IDEAII+SCCGCFHGRTLAAISMSCDNEA RGFGPLL GHLKVDFGD+ +LEK
Sbjct: 155 YEKKKIPIDEAIIISCCGCFHGRTLAAISMSCDNEATRGFGPLLSGHLKVDFGDVVSLEK 214

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
            F+E GD+IAGFLFEPIQGEAGVIIPPDGYLK+VRDLCSKYN+LMIADEIQ+GLAR+G+M
Sbjct: 215 SFREQGDRIAGFLFEPIQGEAGVIIPPDGYLKSVRDLCSKYNVLMIADEIQTGLARTGKM 274

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWE+VRPD+VILGKALGGGVIPVSAVLADK+VMLCI+PGEHGSTFGGNPLASAVAIA
Sbjct: 275 LACDWEQVRPDVVILGKALGGGVIPVSAVLADKDVMLCIRPGEHGSTFGGNPLASAVAIA 334

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSA 299
           SLDVI++E LAERS HLG+ELR  L K+QQQFP+ +KEVRGRGLFNAVEF+ KT  PVSA
Sbjct: 335 SLDVIKEEGLAERSYHLGKELRHQLLKVQQQFPDIIKEVRGRGLFNAVEFNSKTLSPVSA 394

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICLK+KERG+LAKPTHDTIVRLTPPLSISS+ELQEGSK LH+VLELDLPKM+  KP  
Sbjct: 395 YDICLKLKERGVLAKPTHDTIVRLTPPLSISSDELQEGSKTLHEVLELDLPKMKAAKPEK 454

Query: 360 AP--ATPCHRCGRN 371
            P  +T C RCGRN
Sbjct: 455 MPIASTTCDRCGRN 468

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|346980456|gb|AEO51063.1| ornithine aminotransferase [Malus hupehensis]

 Score =  650 bits (1676), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 312/377 (82%), Positives = 339/377 (89%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KALQEQAE+LTLSSRAFYND+FP FAE LTSMFGYDMVLPMNTGAE VETALK+ARKWG
Sbjct: 95  LKALQEQAERLTLSSRAFYNDRFPRFAEYLTSMFGYDMVLPMNTGAEAVETALKVARKWG 154

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y K+K   DEAIIVSCCGCFHGRTLA ISMSCDNEA RGFGPLLPGHLKVDFGD   LEK
Sbjct: 155 YEKRKIPKDEAIIVSCCGCFHGRTLAVISMSCDNEATRGFGPLLPGHLKVDFGDAVGLEK 214

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +FKE+GD+IAGFLFEPIQGEAGVIIPPDGYLK VRDLCSKYN+LMIADEIQSGLARSG+M
Sbjct: 215 VFKENGDRIAGFLFEPIQGEAGVIIPPDGYLKTVRDLCSKYNVLMIADEIQSGLARSGKM 274

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEEVRPD+VILGKALGGGVIPVSAVLADK VMLCI+PGEHGSTFGGNPLASAVA+A
Sbjct: 275 LAVDWEEVRPDVVILGKALGGGVIPVSAVLADKNVMLCIRPGEHGSTFGGNPLASAVAVA 334

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVIR E+LAERSA +G+ELR  L KIQQQFPNY+KEVRGRGLFNAVE +   L P+SA
Sbjct: 335 SLDVIRHERLAERSAEMGQELRNQLVKIQQQFPNYIKEVRGRGLFNAVELNSKNLSPISA 394

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICLK+KE+G+LAKPTHDTI+RLTPPLSIS  E+QEGSKAL DVLE DLPKM+K KP +
Sbjct: 395 YDICLKLKEKGVLAKPTHDTIIRLTPPLSISLEEVQEGSKALSDVLEHDLPKMQKEKPEN 454

Query: 360 APATP---CHRCGRNLY 373
             +T    C RCGRNLY
Sbjct: 455 TSSTASNICDRCGRNLY 471

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|304650830|gb|ADM47437.1| ornithine aminotransferase [Nicotiana tabacum]

 Score =  640 bits (1650), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 310/378 (82%), Positives = 341/378 (90%), Gaps = 4/378 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           MKAL EQA+ LTLSSRAFYNDKFPVFAE +TSMFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 98  MKALAEQAQTLTLSSRAFYNDKFPVFAEYITSMFGYDMVLPMNTGAEGVETALKLARKWG 157

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
            +KK+   +E IIVSCCGCFHGRTLAAISMSCDNEA RGF PLLPG LKVDFGD  ALEK
Sbjct: 158 SMKKRIPKNEVIIVSCCGCFHGRTLAAISMSCDNEATRGFWPLLPGQLKVDFGDAVALEK 217

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +FKE GDQIAGFLFEPIQGEAGVIIPP+GYLKAVRDLCSKYNILMIADEIQSGLARSGR+
Sbjct: 218 LFKEKGDQIAGFLFEPIQGEAGVIIPPEGYLKAVRDLCSKYNILMIADEIQSGLARSGRL 277

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEEVR D+VILGKALGGGV+PVSAVLADK+VMLCIQ GEHGSTFGGNPLASAVAIA
Sbjct: 278 LACDWEEVRSDVVILGKALGGGVLPVSAVLADKDVMLCIQAGEHGSTFGGNPLASAVAIA 337

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSA 299
           SLDVIR+E LAERSA +GE+LR  L K+Q+QFPN++KEVRG+GLFNAVE + K+ LPV+A
Sbjct: 338 SLDVIREEGLAERSAQMGEQLRHQLMKVQEQFPNFIKEVRGKGLFNAVELNSKSLLPVTA 397

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDIC+K+KERGILAKPTHD+I+RLTPPLS+S  ELQEGSKALHDV E+DL KM+K KPA 
Sbjct: 398 YDICMKLKERGILAKPTHDSIIRLTPPLSMSLEELQEGSKALHDVFEVDLLKMQKEKPAT 457

Query: 360 ---APATPCHRCGRNLYG 374
              A ++ C RCGRNLYG
Sbjct: 458 VSHATSSVCDRCGRNLYG 475

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449439181|ref|XP_004137365.1| PREDICTED: probable ornithine aminotransferase-like [Cucumis sativus]

 Score =  637 bits (1644), Expect = e-180,   Method: Compositional matrix adjust.
 Identities = 310/378 (82%), Positives = 338/378 (89%), Gaps = 4/378 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KA QEQAEKLTLSSRAFYNDKFP FA+ LT +FGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 93  VKAFQEQAEKLTLSSRAFYNDKFPHFADYLTQLFGYDMVLPMNTGAEGVETALKLARKWG 152

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KK+   DEA IVSCCGCFHGRTL  ISMSCDNEA R FGPLLPGHLKVDFGD  ALEK
Sbjct: 153 YKKKRIPKDEAFIVSCCGCFHGRTLGVISMSCDNEATREFGPLLPGHLKVDFGDADALEK 212

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGVIIPPDGYLKAVRDLC+KYNILMIADEIQSGLARSG++
Sbjct: 213 IFKEHGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCTKYNILMIADEIQSGLARSGKL 272

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWE VRPD+VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA
Sbjct: 273 LACDWENVRPDLVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 332

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SL+VI+DE+LAERSA LGEEL++ L KIQ++FP Y+K VRGRGLFNAVE    AL PVSA
Sbjct: 333 SLEVIKDERLAERSAKLGEELKEQLIKIQERFPQYIKNVRGRGLFNAVELKGKALSPVSA 392

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDIC+K+KERG+LAKPTHDTI+RLTPPLSIS +EL+EGSKA+HDVLE+DLPK+ K KP  
Sbjct: 393 YDICMKLKERGVLAKPTHDTIIRLTPPLSISLDELKEGSKAVHDVLEIDLPKLMKEKPHT 452

Query: 360 APATP---CHRCGRNLYG 374
           A ++    C RCGRNLY 
Sbjct: 453 ASSSDSNICDRCGRNLYA 470

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15237392|ref|NP_199430.1| ornithine-delta-aminotransferase [Arabidopsis thaliana] gi|9757738|dbj|BAB08263.1| ornithine aminotransferase [Arabidopsis thaliana] gi|66792620|gb|AAY56412.1| At5g46180 [Arabidopsis thaliana] gi|115646724|gb|ABJ17095.1| At5g46180 [Arabidopsis thaliana] gi|332007967|gb|AED95350.1| ornithine-delta-aminotransferase [Arabidopsis thaliana]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 306/377 (81%), Positives = 339/377 (89%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           MKALQEQ EKLTLSSRAFYNDKFPVFAERLT+MFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 98  MKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMFGYDMVLPMNTGAEGVETALKLARKWG 157

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           + KK    DEAIIVSCCGCFHGRTLA +SMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct: 158 HEKKNIPKDEAIIVSCCGCFHGRTLAIVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 217

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGVIIPPDGYLKAVR+LC+KYN+LMIADE+QSGLARSG+M
Sbjct: 218 IFKEKGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGLARSGKM 277

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEE+RPDMVILGKALGGGVIPVSAVLADK+VML I+PG+HGSTFGGNPLASAVA+A
Sbjct: 278 LACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMA 337

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVI +EKL ERSA LGEELR  L +I++QFP Y+KEVRGRGLFNA+EF+  +L PVSA
Sbjct: 338 SLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSA 397

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL++GS+ALHDVLELDLP + K     
Sbjct: 398 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLELDLPNLLKINSGK 457

Query: 360 APA---TPCHRCGRNLY 373
            P    T C RCGRNLY
Sbjct: 458 TPVSHITECDRCGRNLY 474

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297791071|ref|XP_002863420.1| delta-OAT [Arabidopsis lyrata subsp. lyrata] gi|297309255|gb|EFH39679.1| delta-OAT [Arabidopsis lyrata subsp. lyrata]

 Score =  629 bits (1623), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 305/377 (80%), Positives = 339/377 (89%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KALQEQ EKLTLSSRAF+NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 98  VKALQEQVEKLTLSSRAFFNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 157

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           + KK    DE IIVSCCGCFHGRTLA ISMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct: 158 HEKKNIPKDEVIIVSCCGCFHGRTLAIISMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 217

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE G++IAGFLFEPIQGEAGVIIPPDGYLKAVR+LC+K+N+LMIADE+QSGLARSG+M
Sbjct: 218 IFKEKGEKIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKHNVLMIADEVQSGLARSGKM 277

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEE+RPDMVILGKALGGGVIPVSAVLADK+VML I+PG+HGSTFGGNPLASAVA+A
Sbjct: 278 LACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMA 337

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVI +EKL ERSA LGEELR  L +I++QFP Y+KEVRGRGLFNA+EF+  +L PVSA
Sbjct: 338 SLDVIEEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSA 397

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL+EGSKALHDVLELDLP +R+     
Sbjct: 398 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELREGSKALHDVLELDLPNLREINSGK 457

Query: 360 APA---TPCHRCGRNLY 373
            P    T C RCGRNLY
Sbjct: 458 TPVSHITECDRCGRNLY 474

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|157890950|dbj|BAF81516.1| ornithine-oxo-acid transaminase [Brassica rapa]

 Score =  624 bits (1608), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 301/377 (79%), Positives = 340/377 (90%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KALQEQ +KLTLSSRAFYNDKFPVFAERLT+MFGY+MVLPMNTGAEGVETALK+ARKWG
Sbjct: 100 IKALQEQVQKLTLSSRAFYNDKFPVFAERLTNMFGYEMVLPMNTGAEGVETALKVARKWG 159

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           + KK    DEA+IVSCCGCFHGRTLA ISMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct: 160 HEKKHIPKDEALIVSCCGCFHGRTLAVISMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 219

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGV+IPP GYLKAVR+LC+K+N+LMIADE+QSGLARSG+M
Sbjct: 220 IFKEKGDKIAGFLFEPIQGEAGVVIPPAGYLKAVRELCTKHNVLMIADEVQSGLARSGKM 279

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEE+RPDMVILGKALGGGVIPVSAVLADK+VML I+PG+HGSTFGGNPLASAVA+A
Sbjct: 280 LACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMA 339

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVI +EKL ERSA LGEELR  L KI++QFP+++KEVRGRGLFNAVEFD  +L PVSA
Sbjct: 340 SLDVIEEEKLVERSASLGEELRIQLNKIKKQFPDHIKEVRGRGLFNAVEFDSKSLSPVSA 399

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL+EGSKAL DVLE+DLPK++K     
Sbjct: 400 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELREGSKALRDVLEVDLPKLQKINAGK 459

Query: 360 APA---TPCHRCGRNLY 373
            P    T C RCGR+LY
Sbjct: 460 TPVSHLTECDRCGRSLY 476

Source: Brassica rapa

Species: Brassica rapa

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443914|ref|XP_002278418.1| PREDICTED: probable ornithine aminotransferase [Vitis vinifera] gi|297740745|emb|CBI30927.3| unnamed protein product [Vitis vinifera]

 Score =  619 bits (1597), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 302/376 (80%), Positives = 331/376 (88%), Gaps = 4/376 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KAL EQAE+LTLSSRAFYND+FP+FAERL +MFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct: 88  LKALVEQAERLTLSSRAFYNDRFPIFAERLKNMFGYDMVLPMNTGAEGVETALKLARKWG 147

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KKK   D+AIIVSCCGCFHGRTLA ISMSCDNEA RGFGPLLPGHLKVDFGD  ALEK
Sbjct: 148 YEKKKIPKDQAIIVSCCGCFHGRTLAVISMSCDNEATRGFGPLLPGHLKVDFGDEVALEK 207

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IF+E+GD+IAGFLFEPIQGEAGVIIPPDGYLKAVR+LCSK+NILMIADEIQSGL RSGRM
Sbjct: 208 IFEENGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCSKFNILMIADEIQSGLGRSGRM 267

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DW EVRPD+VILGKALGGGVI VSAVLADK+VML IQPGEHGSTFGGNPLASAVA+A
Sbjct: 268 LACDWAEVRPDVVILGKALGGGVIAVSAVLADKDVMLSIQPGEHGSTFGGNPLASAVAVA 327

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD-KTALPVSA 299
           SLDVI +E L+ERS  +G+ELR  L KI Q FPN +KEVRG+GLFNAVE + K   PVSA
Sbjct: 328 SLDVITEEGLSERSDQMGQELRNQLMKIHQLFPNLIKEVRGKGLFNAVELNSKVLFPVSA 387

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICLK+KERG+LAKPTHDTI+RLTPPLSIS +ELQEGS AL DV+E D+PKM+K K   
Sbjct: 388 YDICLKLKERGVLAKPTHDTIIRLTPPLSISLDELQEGSNALRDVMEFDVPKMQKAKHKR 447

Query: 360 APATP---CHRCGRNL 372
            P T    C RCGRN+
Sbjct: 448 VPQTTTNICDRCGRNM 463

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|169665583|gb|ACA63476.1| ornithine aminotransferase [Brassica napus]

 Score =  617 bits (1592), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 297/377 (78%), Positives = 338/377 (89%), Gaps = 4/377 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KALQEQ EKLTLSSRAFYNDKFPVFAERLT+MFGY+MVLPMNTGAEGVETALK+ARKWG
Sbjct: 99  IKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMFGYEMVLPMNTGAEGVETALKVARKWG 158

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           + KK    DEAIIVSCCGCFHGRTLA ISMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct: 159 HEKKHIPKDEAIIVSCCGCFHGRTLAVISMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 218

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IFKE GD+IAGFLFEPIQGEAGV+IPP+GYLKAVR+LC+K+N+LMIADE+QSGLARSG+M
Sbjct: 219 IFKEKGDKIAGFLFEPIQGEAGVVIPPEGYLKAVRELCTKHNVLMIADEVQSGLARSGKM 278

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEE+RPDMVILGKALGGGV+PVSAVLADK VML I+PG+HGSTFGGNPLASAVA+A
Sbjct: 279 LACDWEEIRPDMVILGKALGGGVVPVSAVLADKNVMLHIKPGQHGSTFGGNPLASAVAMA 338

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           SLDVI +EKL ERSA  G+ELR  L +I+++FP+Y+KEVRGRGLFNAVEF+  +L PVSA
Sbjct: 339 SLDVIEEEKLVERSASRGDELRIQLNEIKEKFPDYIKEVRGRGLFNAVEFNSESLSPVSA 398

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL+EGSKAL DVLE+DLP ++K     
Sbjct: 399 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELREGSKALRDVLEVDLPNLQKINAGK 458

Query: 360 APA---TPCHRCGRNLY 373
            P    T C RCGR+LY
Sbjct: 459 TPVSHLTECDRCGRSLY 475

Source: Brassica napus

Species: Brassica napus

Genus: Brassica

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2161398	475	DELTA-OAT "AT5G46180" [Arabido	0.997	0.785	0.811	5e-163
UNIPROTKB|Q10G56	473	OAT "Ornithine aminotransferas	0.997	0.788	0.737	2.3e-151
DICTYBASE|DDB_G0287913	416	oatA "ornithine-oxo-acid trans	0.887	0.798	0.559	8.6e-104
CGD|CAL0000636	436	CAR2 [Candida albicans (taxid:	0.938	0.805	0.530	2e-95
UNIPROTKB|Q59US9	436	CAR2 "Putative uncharacterized	0.938	0.805	0.530	2e-95
POMBASE|SPBC21C3.08c	438	car2 "ornithine transaminase C	0.941	0.803	0.525	7.8e-94
ASPGD|ASPL0000050437	454	otaA [Emericella nidulans (tax	0.927	0.764	0.502	4.3e-93
FB|FBgn0022774	431	Oat "Ornithine aminotransferas	0.871	0.756	0.520	1.7e-91
UNIPROTKB|P38021	401	rocD "Ornithine aminotransfera	0.893	0.832	0.510	6.5e-90
SGD|S000004430	424	CAR2 "L-ornithine transaminase	0.927	0.818	0.513	8.3e-90

TAIR|locus:2161398 DELTA-OAT "AT5G46180" [Arabidopsis thaliana (taxid:3702)]

 Score = 1587 (563.7 bits), Expect = 5.0e-163, P = 5.0e-163
 Identities = 306/377 (81%), Positives = 339/377 (89%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             MKALQEQ EKLTLSSRAFYNDKFPVFAERLT+MFGYDMVLPMNTGAEGVETALKLARKWG
Sbjct:    98 MKALQEQVEKLTLSSRAFYNDKFPVFAERLTNMFGYDMVLPMNTGAEGVETALKLARKWG 157

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             + KK    DEAIIVSCCGCFHGRTLA +SMSCDN+A RGFGPLLPG+LKVDFGD  +LEK
Sbjct:   158 HEKKNIPKDEAIIVSCCGCFHGRTLAIVSMSCDNDATRGFGPLLPGNLKVDFGDADSLEK 217

Query:   121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             IFKE GD+IAGFLFEPIQGEAGVIIPPDGYLKAVR+LC+KYN+LMIADE+QSGLARSG+M
Sbjct:   218 IFKEKGDRIAGFLFEPIQGEAGVIIPPDGYLKAVRELCTKYNVLMIADEVQSGLARSGKM 277

Query:   181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
             LA DWEE+RPDMVILGKALGGGVIPVSAVLADK+VML I+PG+HGSTFGGNPLASAVA+A
Sbjct:   278 LACDWEEIRPDMVILGKALGGGVIPVSAVLADKDVMLHIKPGQHGSTFGGNPLASAVAMA 337

Query:   241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
             SLDVI +EKL ERSA LGEELR  L +I++QFP Y+KEVRGRGLFNA+EF+  +L PVSA
Sbjct:   338 SLDVIVEEKLVERSASLGEELRIQLNEIKKQFPKYIKEVRGRGLFNAIEFNSESLSPVSA 397

Query:   300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
             YDICL +KERG+LAKPTH+TIVRLTPPLSISS+EL++GS+ALHDVLELDLP + K     
Sbjct:   398 YDICLSLKERGVLAKPTHNTIVRLTPPLSISSDELRDGSEALHDVLELDLPNLLKINSGK 457

Query:   360 APA---TPCHRCGRNLY 373
              P    T C RCGRNLY
Sbjct:   458 TPVSHITECDRCGRNLY 474

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS;IDA;IMP

GO:0005737 "cytoplasm" evidence=ISM

GO:0005739 "mitochondrion" evidence=IDA

GO:0006561 "proline biosynthetic process" evidence=IDA;IMP

GO:0006593 "ornithine catabolic process" evidence=IDA;IMP

GO:0019544 "arginine catabolic process to glutamate" evidence=IMP

GO:0008270 "zinc ion binding" evidence=IDA

GO:0009626 "plant-type hypersensitive response" evidence=TAS

GO:0009816 "defense response to bacterium, incompatible interaction" evidence=IEP

GO:0006635 "fatty acid beta-oxidation" evidence=RCA

GO:0007031 "peroxisome organization" evidence=RCA

GO:0010260 "organ senescence" evidence=RCA

GO:0009651 "response to salt stress" evidence=IDA

GO:0042538 "hyperosmotic salinity response" evidence=IDA

UNIPROTKB|Q10G56 OAT "Ornithine aminotransferase, mitochondrial" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1477 (525.0 bits), Expect = 2.3e-151, P = 2.3e-151
 Identities = 278/377 (73%), Positives = 324/377 (85%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             ++AL+EQAE+LTLSSRAFYNDKFP+FAE LTSMFGY+M+LPMNTGAEGVETA+KL RKWG
Sbjct:    97 LRALKEQAERLTLSSRAFYNDKFPIFAEYLTSMFGYEMMLPMNTGAEGVETAIKLVRKWG 156

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             Y KKK   +EA+IVSCCGCFHGRTL  ISMSCDN+A RGFGPL+PGHLKVDFGD   LEK
Sbjct:   157 YEKKKIPKNEALIVSCCGCFHGRTLGVISMSCDNDATRGFGPLVPGHLKVDFGDTDGLEK 216

Query:   121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             IFK+ G++I GFLFEPIQGEAGVIIPPDGYLKAVRDLCS++NILMIADEIQ+G+AR+G+M
Sbjct:   217 IFKDHGERICGFLFEPIQGEAGVIIPPDGYLKAVRDLCSRHNILMIADEIQTGIARTGKM 276

Query:   181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
             LA DWE +RPD+VILGKALG GV+PVSAVLADK++MLCI+PGEHGSTFGGNPLASAVA+A
Sbjct:   277 LACDWENIRPDVVILGKALGAGVVPVSAVLADKDIMLCIKPGEHGSTFGGNPLASAVAVA 336

Query:   241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
             SL V+ DE L ER+A LG+E R  L K+QQ+FP  ++EVRGRGL NAV+    AL P SA
Sbjct:   337 SLKVVTDEGLVERAAKLGQEFRDQLQKVQQRFPQIIREVRGRGLLNAVDLSNEALSPASA 396

Query:   300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKP-KPA 358
             YDIC+K+KERG+LAKPTHDTI+RL PPLSIS  EL E SKA  DVLE DLP+++K  K  
Sbjct:   397 YDICIKLKERGVLAKPTHDTIIRLAPPLSISPEELAEASKAFSDVLEHDLPQLQKQIKKT 456

Query:   359 DAPATP--CHRCGRNLY 373
             ++ A    C RCGR+LY
Sbjct:   457 ESAAEKQSCDRCGRDLY 473

GO:0006979 "response to oxidative stress" evidence=IMP

GO:0009408 "response to heat" evidence=IEP

GO:0009413 "response to flooding" evidence=IEP

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009651 "response to salt stress" evidence=IEP

GO:0009733 "response to auxin stimulus" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IEP

GO:0009741 "response to brassinosteroid stimulus" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

DICTYBASE|DDB_G0287913 oatA "ornithine-oxo-acid transaminase" [Dictyostelium discoideum (taxid:44689)]

 Score = 1028 (366.9 bits), Expect = 8.6e-104, P = 8.6e-104
 Identities = 188/336 (55%), Positives = 255/336 (75%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             + AL  QA+K  LSSRAFYN+ FP +A+ +T  FGY+MVLPMNTGAE VET++KLAR+WG
Sbjct:    71 VSALITQAQKCALSSRAFYNEVFPQYAKYITEYFGYEMVLPMNTGAEAVETSIKLARRWG 130

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             YVKK  + D+AI++SC GCFHGRT+  ISMS D  +   +GPL+ G +K+D+     LE+
Sbjct:   131 YVKKGIAEDQAIVISCKGCFHGRTIGVISMSDDPSSYNKYGPLMNGIIKIDYNSTQQLEE 190

Query:   121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             +  +  D++ GF+ EPIQGEAGV++P +GYLK   +LC KYN+L++ADEIQ+GL R+GRM
Sbjct:   191 VLSQHADRVCGFIVEPIQGEAGVVVPDEGYLKKCYELCKKYNVLLVADEIQTGLCRTGRM 250

Query:   181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
             L SDW+ ++PD+V+LGKA+ GG++P+SAVL  K+VML I+PGEHGST+GG+PLASAVA+A
Sbjct:   251 LCSDWDGIKPDLVLLGKAISGGLLPISAVLGGKDVMLTIKPGEHGSTYGGSPLASAVAMA 310

Query:   241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
             +LDV+RDE LAE +  LGE  R  +  I    P  ++ VRG+GL NA+  D     VSA+
Sbjct:   311 ALDVLRDENLAENAQKLGEHFRAQISNINH--PA-IQLVRGKGLLNAIVIDPN-FTVSAW 366

Query:   301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
             DIC+K  E G+LAKPTHD I+RL PPL+I+  ++ +
Sbjct:   367 DICIKFAENGLLAKPTHDNIIRLAPPLTITLEQIDQ 402

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA;ISS

GO:0005575 "cellular_component" evidence=ND

GO:0006591 "ornithine metabolic process" evidence=IC

GO:0006527 "arginine catabolic process" evidence=ISS

GO:0016740 "transferase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0044351 "macropinocytosis" evidence=RCA

CGD|CAL0000636 CAR2 [Candida albicans (taxid:5476)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 193/364 (53%), Positives = 259/364 (71%)

Query:     3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
             AL +QA KLTL SRAF +D F V+A+ +T  F Y+MVLPMNTGAE VET LKLARKWGY 
Sbjct:    71 ALVDQASKLTLCSRAFSSDVFGVYAKYITEYFNYEMVLPMNTGAEAVETGLKLARKWGYD 130

Query:    63 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA-------IRGFGPLLPGHLK---VDF 112
             KK     EAII+S    FHGRTL  ISMS D +A       +RG GP +PG  +   + +
Sbjct:   131 KKGIPSGEAIILSAVNNFHGRTLGVISMSTDPDATTNFGPYLRGVGPQIPGEPEGTLLRY 190

Query:   113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
             G I  +EK F  +GD+IA  L EPIQGEAG+++PP+ YL  V++LC K+N+L+I DEIQ+
Sbjct:   191 GVIEDVEKAFANAGDKIAAILLEPIQGEAGIVVPPEDYLPRVQELCKKHNVLLICDEIQT 250

Query:   173 GLARSGRMLASDWEE-VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231
             G+AR+G+ML  +  + V+PD+V+LGKA+ GGV+PVSAVL+ KEVM  ++PG HGST+GGN
Sbjct:   251 GIARTGKMLCYEHSKGVKPDIVLLGKAISGGVMPVSAVLSSKEVMSTLEPGSHGSTYGGN 310

Query:   232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
             PLA  VAIA+LDV+RDE L ER+  LG  LR+ L ++Q++    + EVRG+GL +A+  D
Sbjct:   311 PLACRVAIAALDVVRDENLVERAQKLGALLREKLEELQKESNGMISEVRGKGLLSAIVID 370

Query:   292 KTALPV-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350
             ++     +A+D+CL MK  G+LAKPTHD I+RL PPL IS  +L +G  ++   L+ +LP
Sbjct:   371 ESKTNGRTAWDLCLLMKNHGVLAKPTHDNIIRLAPPLVISEEDLLKGVDSIRKSLK-ELP 429

Query:   351 KMRK 354
              + K
Sbjct:   430 NVAK 433

GO:0035690 "cellular response to drug" evidence=IDA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA

GO:0006591 "ornithine metabolic process" evidence=IEA

GO:0006527 "arginine catabolic process" evidence=IEA

UNIPROTKB|Q59US9 CAR2 "Putative uncharacterized protein CAR2" [Candida albicans SC5314 (taxid:237561)]

 Score = 949 (339.1 bits), Expect = 2.0e-95, P = 2.0e-95
 Identities = 193/364 (53%), Positives = 259/364 (71%)

Query:     3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
             AL +QA KLTL SRAF +D F V+A+ +T  F Y+MVLPMNTGAE VET LKLARKWGY 
Sbjct:    71 ALVDQASKLTLCSRAFSSDVFGVYAKYITEYFNYEMVLPMNTGAEAVETGLKLARKWGYD 130

Query:    63 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA-------IRGFGPLLPGHLK---VDF 112
             KK     EAII+S    FHGRTL  ISMS D +A       +RG GP +PG  +   + +
Sbjct:   131 KKGIPSGEAIILSAVNNFHGRTLGVISMSTDPDATTNFGPYLRGVGPQIPGEPEGTLLRY 190

Query:   113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
             G I  +EK F  +GD+IA  L EPIQGEAG+++PP+ YL  V++LC K+N+L+I DEIQ+
Sbjct:   191 GVIEDVEKAFANAGDKIAAILLEPIQGEAGIVVPPEDYLPRVQELCKKHNVLLICDEIQT 250

Query:   173 GLARSGRMLASDWEE-VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231
             G+AR+G+ML  +  + V+PD+V+LGKA+ GGV+PVSAVL+ KEVM  ++PG HGST+GGN
Sbjct:   251 GIARTGKMLCYEHSKGVKPDIVLLGKAISGGVMPVSAVLSSKEVMSTLEPGSHGSTYGGN 310

Query:   232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
             PLA  VAIA+LDV+RDE L ER+  LG  LR+ L ++Q++    + EVRG+GL +A+  D
Sbjct:   311 PLACRVAIAALDVVRDENLVERAQKLGALLREKLEELQKESNGMISEVRGKGLLSAIVID 370

Query:   292 KTALPV-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP 350
             ++     +A+D+CL MK  G+LAKPTHD I+RL PPL IS  +L +G  ++   L+ +LP
Sbjct:   371 ESKTNGRTAWDLCLLMKNHGVLAKPTHDNIIRLAPPLVISEEDLLKGVDSIRKSLK-ELP 429

Query:   351 KMRK 354
              + K
Sbjct:   430 NVAK 433

GO:0035690 "cellular response to drug" evidence=IDA

POMBASE|SPBC21C3.08c car2 "ornithine transaminase Car2" [Schizosaccharomyces pombe (taxid:4896)]

 Score = 934 (333.8 bits), Expect = 7.8e-94, P = 7.8e-94
 Identities = 194/369 (52%), Positives = 262/369 (71%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             ++AL EQA+++TLSSRAFYNDKF  FA+ +T  FGY+MV+PMNTGAE VETA KLAR WG
Sbjct:    71 IEALVEQAQRVTLSSRAFYNDKFGPFAKYITEYFGYEMVIPMNTGAEAVETACKLARLWG 130

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP-------GHLKV-DF 112
             Y  KK   DEAII+SC   FHGRT+  ISMS D +A   +GP LP       G  +V  +
Sbjct:   131 YKAKKIPTDEAIILSCVDNFHGRTMGIISMSTDPDARDNYGPYLPNVGPKISGADRVLRY 190

Query:   113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
              +I  L+      G ++A FL EPIQGEAGV++P DGYL+    LC  +N+L IADE+Q+
Sbjct:   191 NNIEDLKYYLDTFGPKVAAFLVEPIQGEAGVMVPDDGYLEEAYKLCKAHNVLFIADEVQT 250

Query:   173 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP 232
             G+AR+G+ML  +   V+PD+VILGKA+ GGV PVSAVL+ +E+ML  +PG HGST+GGNP
Sbjct:   251 GVARTGKMLCIEHSNVKPDVVILGKAISGGVYPVSAVLSSREIMLNFEPGTHGSTYGGNP 310

Query:   233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK 292
             L +AV+IA+L+V+++EKL ER+A LGE+ R  L  I+ + P  V++VRGRGL NAV  D+
Sbjct:   311 LGAAVSIAALEVVKEEKLTERAAVLGEKFRTAL--IECKSP-IVQKVRGRGLLNAVVIDE 367

Query:   293 TALPV-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVLEL 347
             +     +A+D+CL M+ RG+LAKPTH  I+R +PPL I+  +L +G     K+L+D+  +
Sbjct:   368 SKTNGRTAWDLCLIMRSRGVLAKPTHGNIIRFSPPLVITEEDLMKGIEVIKKSLNDLPTI 427

Query:   348 DL-PKMRKP 355
             D+ P   KP
Sbjct:   428 DMTPYAEKP 436

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IMP

GO:0005634 "nucleus" evidence=ISO;IDA

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0006527 "arginine catabolic process" evidence=IMP

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

ASPGD|ASPL0000050437 otaA [Emericella nidulans (taxid:162425)]

 Score = 927 (331.4 bits), Expect = 4.3e-93, P = 4.3e-93
 Identities = 181/360 (50%), Positives = 253/360 (70%)

Query:     3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
             AL +QA +LTLSSRAFYND FP FAE +T  FG+DMVLPMNTGAE VET +K+ARKWGY 
Sbjct:    78 ALVDQASRLTLSSRAFYNDVFPKFAEMVTKYFGFDMVLPMNTGAEAVETGIKIARKWGYK 137

Query:    63 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-------LPGHLK-VDFGD 114
              K    +EAII+S    FHGRT+AAIS+S D E+   +GP        +PG  K + + D
Sbjct:   138 VKGIPENEAIILSAENNFHGRTMAAISLSSDPESRENYGPYVPNIGCTIPGTEKPITYND 197

Query:   115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174
               AL + F+++G  +A FL EPIQGEAG+I+P D YL+  R LC ++N+L+I DEIQ+G+
Sbjct:   198 KAALREAFEKAGSNLAAFLVEPIQGEAGIIVPDDDYLQLARSLCDQHNVLLICDEIQTGI 257

Query:   175 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA 234
             AR+G++L  +W  ++PDMV+LGKA+ GG+ PVS VL  K+VML ++PG HGST+GGNPLA
Sbjct:   258 ARTGKLLCHEWSGIKPDMVLLGKAISGGMYPVSCVLGRKDVMLTVEPGTHGSTYGGNPLA 317

Query:   235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294
              AVAI +L+V+++E + ER+  LG+  R  L  IQ      ++ VRG+GL NA+  D++ 
Sbjct:   318 CAVAIRALEVVQEENMVERAEKLGQAFRSGLEAIQNPI---IQTVRGKGLLNAIVIDESK 374

Query:   295 LPV-SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR 353
                 +A+D+C+ MKE+G+LAKPTH  I+RL PPL I+  E+ +  + +   +  +LP ++
Sbjct:   375 TNGHTAWDLCMLMKEKGLLAKPTHQNIIRLAPPLVITEEEIAKALEIIKAAVA-ELPNLK 433

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IDA;RCA

GO:0006525 "arginine metabolic process" evidence=RCA

GO:0006527 "arginine catabolic process" evidence=IEA

GO:0005622 "intracellular" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005829 "cytosol" evidence=IEA

FB|FBgn0022774 Oat "Ornithine aminotransferase precursor" [Drosophila melanogaster (taxid:7227)]

 Score = 912 (326.1 bits), Expect = 1.7e-91, P = 1.7e-91
 Identities = 174/334 (52%), Positives = 246/334 (73%)

Query:     3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
             AL  QA KL L+SRAFY+D    + E +T +FG+D VLPMNTG EG ETA KLARKWGY+
Sbjct:    94 ALTAQASKLALTSRAFYSDVLGEYEEYVTKLFGFDKVLPMNTGVEGGETACKLARKWGYL 153

Query:    63 KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 122
             +KK   ++A I+     F GRTL+A+S S D  +  GFGP +PG   +++ +++ALE+  
Sbjct:   154 EKKIPANQAKIIFARNNFWGRTLSAVSASNDPSSYEGFGPFMPGFELIEYDNVSALEESL 213

Query:   123 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 182
             K+    +  F+ EPIQGEAGV++P DGYLK VR+LC+KYN+L IADE+Q+GLAR+G++LA
Sbjct:   214 KDPN--VCAFMVEPIQGEAGVVVPSDGYLKKVRELCTKYNVLWIADEVQTGLARTGKLLA 271

Query:   183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 242
              D+E+V+PD++ILGKAL GG+ PVSAVL + +VMLCI+PGEHGST+GGNPL   VA+A+L
Sbjct:   272 VDYEQVQPDILILGKALSGGMYPVSAVLCNDQVMLCIKPGEHGSTYGGNPLGCRVAMAAL 331

Query:   243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 302
             +V+++EKLAE +  +G+ LR  L  + +   + V  VRG+GL NA+  ++      A+++
Sbjct:   332 EVLQEEKLAENAFKMGDLLRNELSTLPK---DVVSVVRGKGLLNAIVINQK---FDAWEV 385

Query:   303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
             CL++KE G+LAKPTH  I+R  PPL I+  +++E
Sbjct:   386 CLRLKENGLLAKPTHGDIIRFAPPLVINETQMRE 419

GO:0005759 "mitochondrial matrix" evidence=ISS;NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=ISS;NAS

GO:0006591 "ornithine metabolic process" evidence=ISS;NAS

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0022008 "neurogenesis" evidence=IMP

UNIPROTKB|P38021 rocD "Ornithine aminotransferase" [Bacillus subtilis subsp. subtilis str. 168 (taxid:224308)]

 Score = 897 (320.8 bits), Expect = 6.5e-90, P = 6.5e-90
 Identities = 176/345 (51%), Positives = 240/345 (69%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             ++AL++QA+K+TL+SRAF+ND+   F E+   + G +M+LPMNTGAE VE+A+K AR+W 
Sbjct:    65 IQALKDQADKITLTSRAFHNDQLGPFYEKTAKLTGKEMILPMNTGAEAVESAVKAARRWA 124

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             Y  K  + ++A I++C G FHGRT+ A+S+S + E  RGFGP+LPG   + +GD+ AL +
Sbjct:   125 YEVKGVADNQAEIIACVGNFHGRTMLAVSLSSEEEYKRGFGPMLPGIKLIPYGDVEALRQ 184

Query:   121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                 +    A FLFEPIQGEAG++IPP+G+L+    +C + N+L IADEIQ+GL R+G+ 
Sbjct:   185 AITPN---TAAFLFEPIQGEAGIVIPPEGFLQEAAAICKEENVLFIADEIQTGLGRTGKT 241

Query:   181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
              A DW+ + PDM ILGKALGGGV P+S + AD+E++    PG HGSTFGGNPLA AV+IA
Sbjct:   242 FACDWDGIVPDMYILGKALGGGVFPISCIAADREILGVFNPGSHGSTFGGNPLACAVSIA 301

Query:   241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
             SL+V+ DEKLA+RS  LGE  +  L  I    P  +KEVRGRGLF  VE  + A P   Y
Sbjct:   302 SLEVLEDEKLADRSLELGEYFKSELESIDS--P-VIKEVRGRGLFIGVELTEAARP---Y 355

Query:   301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
               C ++KE G+L K THDT++R  PPL IS  +L    + +  VL
Sbjct:   356 --CERLKEEGLLCKETHDTVIRFAPPLIISKEDLDWAIEKIKHVL 398

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IDA

GO:0006525 "arginine metabolic process" evidence=IDA

SGD|S000004430 CAR2 "L-ornithine transaminase (OTAse)" [Saccharomyces cerevisiae (taxid:4932)]

 Score = 896 (320.5 bits), Expect = 8.3e-90, P = 8.3e-90
 Identities = 184/358 (51%), Positives = 241/358 (67%)

Query:     1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
             +KAL EQA+ LTLSSRAF+ND +  FA+ +T  FG++ VLPMNTGAE VETALKLAR+WG
Sbjct:    66 IKALTEQAQTLTLSSRAFHNDVYAQFAKFVTEFFGFETVLPMNTGAEAVETALKLARRWG 125

Query:    61 YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLP----GHL--KVDFG 113
             Y+KK    D+AII+   G FHGRT  AIS+S D E  +  FGP +P    GH   K+ +G
Sbjct:   126 YMKKNIPQDKAIILGAEGNFHGRTFGAISLSTDYEDSKLHFGPFVPNVASGHSVHKIRYG 185

Query:   114 DITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
                    I +   G  +A  + EPIQGEAG+++PP  Y   V  LC K+N+L+I DEIQ+
Sbjct:   186 HAEDFVPILESPEGKNVAAIILEPIQGEAGIVVPPADYFPKVSALCRKHNVLLIVDEIQT 245

Query:   173 GLARSGRMLASDW--EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG 230
             G+ R+G +L  D    E +PD+V+LGKAL GGV+PVS VL+  ++M C  PG HGSTFGG
Sbjct:   246 GIGRTGELLCYDHYKAEAKPDIVLLGKALSGGVLPVSCVLSSHDIMSCFTPGSHGSTFGG 305

Query:   231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 290
             NPLAS VAIA+L+VIRDEKL +R+A LG      L  +Q +    + EVRG GL  A+  
Sbjct:   306 NPLASRVAIAALEVIRDEKLCQRAAQLGSSFIAQLKALQAKSNGIISEVRGMGLLTAIVI 365

Query:   291 DKT-ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLEL 347
             D + A   +A+D+CL MK+ G+LAKPTHD I+RL PPL IS  +LQ G + +   ++L
Sbjct:   366 DPSKANGKTAWDLCLLMKDHGLLAKPTHDHIIRLAPPLVISEEDLQTGVETIAKCIDL 423

GO:0008483 "transaminase activity" evidence=IEA

GO:0003824 "catalytic activity" evidence=IEA

GO:0055129 "L-proline biosynthetic process" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA;IDA

GO:0016740 "transferase activity" evidence=IEA

GO:0004587 "ornithine-oxo-acid transaminase activity" evidence=IEA;IMP

GO:0005634 "nucleus" evidence=IDA

GO:0006591 "ornithine metabolic process" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0030170 "pyridoxal phosphate binding" evidence=IEA

GO:0006527 "arginine catabolic process" evidence=IC;NAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q81GP2	OAT_BACCR	2, ., 6, ., 1, ., 1, 3	0.4753	0.8930	0.8434	yes	no
C0ZBR4	OAT_BREBN	2, ., 6, ., 1, ., 1, 3	0.4927	0.8983	0.8421	yes	no
Q6GID1	OAT2_STAAR	2, ., 6, ., 1, ., 1, 3	0.5231	0.8957	0.8459	yes	no
C5D6R2	OAT_GEOSW	2, ., 6, ., 1, ., 1, 3	0.5449	0.8636	0.8115	yes	no
Q81TV3	OAT_BACAN	2, ., 6, ., 1, ., 1, 3	0.4753	0.8930	0.8434	yes	no
P60299	OAT2_STAAW	2, ., 6, ., 1, ., 1, 3	0.5260	0.8957	0.8459	yes	no
Q9P7L5	OAT_SCHPO	2, ., 6, ., 1, ., 1, 3	0.5203	0.9411	0.8036	yes	no
B9ITF9	OAT_BACCQ	2, ., 6, ., 1, ., 1, 3	0.4782	0.8930	0.8434	yes	no
Q7W1E4	OAT_BORPA	2, ., 6, ., 1, ., 1, 3	0.46	0.9117	0.8296	yes	no
B9DIU0	OAT_STACT	2, ., 6, ., 1, ., 1, 3	0.5275	0.8930	0.8434	yes	no
P07991	OAT_YEAST	2, ., 6, ., 1, ., 1, 3	0.5139	0.9278	0.8183	yes	no
C1EL61	OAT_BACC3	2, ., 6, ., 1, ., 1, 3	0.4782	0.8930	0.8434	yes	no
Q9FNK4	OAT_ARATH	2, ., 6, ., 1, ., 1, 3	0.8116	0.9973	0.7852	yes	no
Q8CT82	OAT_STAES	2, ., 6, ., 1, ., 1, 3	0.5299	0.8636	0.8156	yes	no
C3P3K3	OAT_BACAA	2, ., 6, ., 1, ., 1, 3	0.4753	0.8930	0.8434	yes	no
P04181	OAT_HUMAN	2, ., 6, ., 1, ., 1, 3	0.5072	0.9064	0.7722	yes	no
Q5HHC8	OAT2_STAAC	2, ., 6, ., 1, ., 1, 3	0.5260	0.8957	0.8459	yes	no
Q3ZCF5	OAT_BOVIN	2, ., 6, ., 1, ., 1, 3	0.5043	0.9064	0.7722	yes	no
C4L2E7	OAT_EXISA	2, ., 6, ., 1, ., 1, 3	0.5246	0.8903	0.8325	yes	no
Q54JP5	OAT_DICDI	2, ., 6, ., 1, ., 1, 3	0.5433	0.9144	0.8221	yes	no
B9EAM9	OAT_MACCJ	2, ., 6, ., 1, ., 1, 3	0.5449	0.8636	0.8136	yes	no
Q8EP32	OAT_OCEIH	2, ., 6, ., 1, ., 1, 3	0.4927	0.8930	0.8391	yes	no
P38021	OAT_BACSU	2, ., 6, ., 1, ., 1, 3	0.5043	0.8930	0.8329	yes	no
Q6LFH8	OAT_PLAF7	2, ., 6, ., 1, ., 1, 3	0.4838	0.8983	0.8115	yes	no
C3LBX0	OAT_BACAC	2, ., 6, ., 1, ., 1, 3	0.4753	0.8930	0.8434	yes	no
Q6GAW9	OAT2_STAAS	2, ., 6, ., 1, ., 1, 3	0.5260	0.8957	0.8459	yes	no
Q9VW26	OAT_DROME	2, ., 6, ., 1, ., 1, 3	0.5209	0.8716	0.7563	yes	no
Q89RB7	OAT_BRAJA	2, ., 6, ., 1, ., 1, 3	0.4670	0.9117	0.8440	yes	no
Q49W96	OAT2_STAS1	2, ., 6, ., 1, ., 1, 3	0.5202	0.8957	0.8459	yes	no
P60298	OAT2_STAAN	2, ., 6, ., 1, ., 1, 3	0.5260	0.8957	0.8459	yes	no
Q5HQK4	OAT_STAEQ	2, ., 6, ., 1, ., 1, 3	0.5299	0.8636	0.8156	yes	no
Q7VSA0	OAT_BORPE	2, ., 6, ., 1, ., 1, 3	0.46	0.9117	0.8296	yes	no
Q10G56	OAT_ORYSJ	2, ., 6, ., 1, ., 1, 3	0.7347	0.9973	0.7885	yes	no
Q9K5Z2	OAT_BACHD	2, ., 6, ., 1, ., 1, 3	0.5	0.8957	0.8417	yes	no
P60297	OAT2_STAAM	2, ., 6, ., 1, ., 1, 3	0.5260	0.8957	0.8459	yes	no
P29758	OAT_MOUSE	2, ., 6, ., 1, ., 1, 3	0.5043	0.9064	0.7722	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.6.1	0.921

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	DELTA-OAT	delta-OAT; ornithine-oxo-acid transaminase; ornithine delta-aminotransferase (475 aa)
		(Arabidopsis thaliana)
Predicted Functional Partners:
	OTC	OTC (ORNITHINE CARBAMOYLTRANSFERASE); amino acid binding / carboxyl- or carbamoyltransferase/ o [...] (375 aa)	•			•		•	•		0.993
	AT2G37500	arginine biosynthesis protein ArgJ family; arginine biosynthesis protein ArgJ family; FUNCTIONS [...] (468 aa)	•					•	•		0.986
	AT4G08900	arginase; Encodes an arginase, likely to be involved in polyamine biosynthesis in pollen. (342 aa)	•					•	•		0.966
	AT2G19940	N-acetyl-gamma-glutamyl-phosphate reductase/ NAD or NADH binding / binding / catalytic/ oxidore [...] (401 aa)	•			•		•	•		0.950
	ALDH12A1	ALDH12A1; 1-pyrroline-5-carboxylate dehydrogenase/ 3-chloroallyl aldehyde dehydrogenase; Encode [...] (556 aa)				•		•	•		0.931
	AT4G17830	peptidase M20/M25/M40 family protein; peptidase M20/M25/M40 family protein; FUNCTIONS IN- metal [...] (440 aa)				•		•			0.909
	AT4G24830	arginosuccinate synthase family; arginosuccinate synthase family; FUNCTIONS IN- argininosuccina [...] (494 aa)	•			•			•		0.908
	AT4G38220	aminoacylase, putative / N-acyl-L-amino-acid amidohydrolase, putative; aminoacylase, putative / [...] (433 aa)						•			0.899
	AT3G57560	aspartate/glutamate/uridylate kinase family protein; encodes a N-acetylglutamate kinase, involv [...] (347 aa)	•					•	•		0.897
	AT5G10920	argininosuccinate lyase, putative / arginosuccinase, putative; argininosuccinate lyase, putativ [...] (517 aa)	•			•		•	•		0.853

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
PLN02624	474	PLN02624, PLN02624, ornithine-delta-aminotransfera	0.0
TIGR01885	401	TIGR01885, Orn_aminotrans, ornithine aminotransfer	0.0
PTZ00125	400	PTZ00125, PTZ00125, ornithine aminotransferase-lik	1e-175
PRK04073	396	PRK04073, rocD, ornithine--oxo-acid transaminase;	1e-155
COG4992	404	COG4992, ArgD, Ornithine/acetylornithine aminotran	1e-146
cd00610	413	cd00610, OAT_like, Acetyl ornithine aminotransfera	1e-132
PRK00854	401	PRK00854, rocD, ornithine--oxo-acid transaminase;	1e-127
PRK02627	396	PRK02627, PRK02627, acetylornithine aminotransfera	1e-119
pfam00202	338	pfam00202, Aminotran_3, Aminotransferase class-III	1e-110
COG0160	447	COG0160, GabT, 4-aminobutyrate aminotransferase an	1e-104
TIGR00707	379	TIGR00707, argD, transaminase, acetylornithine/suc	2e-94
PRK01278	389	PRK01278, argD, acetylornithine transaminase prote	1e-85
PRK05769	441	PRK05769, PRK05769, 4-aminobutyrate aminotransfera	3e-84
PRK11522	459	PRK11522, PRK11522, putrescine--2-oxoglutarate ami	4e-84
PRK03244	398	PRK03244, argD, acetylornithine aminotransferase;	1e-80
COG0161	449	COG0161, BioA, Adenosylmethionine-8-amino-7-oxonon	3e-80
TIGR03372	442	TIGR03372, putres_am_tran, putrescine aminotransfe	2e-74
PRK02936	377	PRK02936, argD, acetylornithine aminotransferase;	4e-74
PRK08117	433	PRK08117, PRK08117, 4-aminobutyrate aminotransfera	1e-73
TIGR00508	417	TIGR00508, bioA, adenosylmethionine-8-amino-7-oxon	1e-72
PRK05093	403	PRK05093, argD, bifunctional N-succinyldiaminopime	1e-72
PLN00144	382	PLN00144, PLN00144, acetylornithine transaminase	8e-69
TIGR03246	397	TIGR03246, arg_catab_astC, succinylornithine trans	2e-66
PRK04612	408	PRK04612, argD, acetylornithine transaminase prote	2e-65
PRK03715	395	PRK03715, argD, acetylornithine transaminase prote	2e-64
PRK07495	425	PRK07495, PRK07495, 4-aminobutyrate aminotransfera	3e-64
TIGR00700	420	TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransf	5e-63
PRK04013	364	PRK04013, argD, acetylornithine/acetyl-lysine amin	2e-61
PRK06918	451	PRK06918, PRK06918, 4-aminobutyrate aminotransfera	3e-60
PRK08593	445	PRK08593, PRK08593, 4-aminobutyrate aminotransfera	1e-59
PRK06777	421	PRK06777, PRK06777, 4-aminobutyrate aminotransfera	2e-58
PRK06058	443	PRK06058, PRK06058, 4-aminobutyrate aminotransfera	2e-58
PRK06917	447	PRK06917, PRK06917, hypothetical protein; Provisio	7e-58
PRK06082	459	PRK06082, PRK06082, 4-aminobutyrate aminotransfera	2e-57
PRK12381	406	PRK12381, PRK12381, bifunctional succinylornithine	1e-55
PRK07481	449	PRK07481, PRK07481, hypothetical protein; Provisio	3e-53
PRK06062	451	PRK06062, PRK06062, hypothetical protein; Provisio	4e-53
PRK08360	443	PRK08360, PRK08360, 4-aminobutyrate aminotransfera	7e-53
PRK06916	460	PRK06916, PRK06916, adenosylmethionine--8-amino-7-	2e-52
PRK09792	421	PRK09792, PRK09792, 4-aminobutyrate transaminase;	2e-52
PRK04260	375	PRK04260, PRK04260, acetylornithine aminotransfera	9e-52
PRK05964	423	PRK05964, PRK05964, adenosylmethionine--8-amino-7-	2e-51
PRK07678	451	PRK07678, PRK07678, aminotransferase; Validated	2e-51
PRK13360	442	PRK13360, PRK13360, omega amino acid--pyruvate tra	8e-51
PRK09264	425	PRK09264, PRK09264, diaminobutyrate--2-oxoglutarat	2e-50
PRK07483	443	PRK07483, PRK07483, hypothetical protein; Provisio	2e-50
TIGR02407	412	TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglu	1e-49
PRK06938	464	PRK06938, PRK06938, diaminobutyrate--2-oxoglutarat	6e-49
COG0001	432	COG0001, HemL, Glutamate-1-semialdehyde aminotrans	1e-48
PRK09221	445	PRK09221, PRK09221, beta alanine--pyruvate transam	2e-48
TIGR00709	442	TIGR00709, dat, 2,4-diaminobutyrate 4-transaminase	2e-48
PRK08088	425	PRK08088, PRK08088, 4-aminobutyrate aminotransfera	1e-47
PRK06931	459	PRK06931, PRK06931, diaminobutyrate--2-oxoglutarat	2e-47
PRK05639	457	PRK05639, PRK05639, 4-aminobutyrate aminotransfera	9e-46
PRK07480	456	PRK07480, PRK07480, putative aminotransferase; Val	2e-45
PRK06105	460	PRK06105, PRK06105, aminotransferase; Provisional	8e-44
PRK06148	1013	PRK06148, PRK06148, hypothetical protein; Provisio	1e-42
PRK06541	460	PRK06541, PRK06541, hypothetical protein; Provisio	1e-41
PRK07986	428	PRK07986, PRK07986, adenosylmethionine--8-amino-7-	2e-41
TIGR00713	423	TIGR00713, hemL, glutamate-1-semialdehyde-2,1-amin	7e-41
PRK06173	429	PRK06173, PRK06173, adenosylmethionine--8-amino-7-	8e-40
PRK07036	466	PRK07036, PRK07036, hypothetical protein; Provisio	9e-40
PLN02760	504	PLN02760, PLN02760, 4-aminobutyrate:pyruvate trans	3e-38
PRK00062	426	PRK00062, PRK00062, glutamate-1-semialdehyde amino	5e-37
PRK08297	443	PRK08297, PRK08297, L-lysine aminotransferase; Pro	2e-36
TIGR03251	431	TIGR03251, LAT_fam, L-lysine 6-transaminase	8e-36
PRK07482	461	PRK07482, PRK07482, hypothetical protein; Provisio	2e-35
PRK12403	460	PRK12403, PRK12403, putative aminotransferase; Pro	5e-35
PRK05965	459	PRK05965, PRK05965, hypothetical protein; Provisio	1e-33
PRK06149	972	PRK06149, PRK06149, hypothetical protein; Provisio	2e-32
PRK07030	466	PRK07030, PRK07030, adenosylmethionine--8-amino-7-	2e-31
PRK08742	472	PRK08742, PRK08742, adenosylmethionine--8-amino-7-	6e-29
PRK06943	453	PRK06943, PRK06943, adenosylmethionine--8-amino-7-	6e-28
PRK00615	433	PRK00615, PRK00615, glutamate-1-semialdehyde amino	1e-27
PRK05630	422	PRK05630, PRK05630, adenosylmethionine--8-amino-7-	1e-27
PRK12389	428	PRK12389, PRK12389, glutamate-1-semialdehyde amino	4e-26
TIGR00699	464	TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotran	2e-21
PLN02482	474	PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-a	4e-21
PRK06209	431	PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-a	5e-16
PRK07046	453	PRK07046, PRK07046, aminotransferase; Validated	3e-15
cd01494	170	cd01494, AAT_I, Aspartate aminotransferase (AAT) s	2e-11
PLN02974	817	PLN02974, PLN02974, adenosylmethionine-8-amino-7-o	1e-09
pfam00155	357	pfam00155, Aminotran_1_2, Aminotransferase class I	5e-06
COG0156	388	COG0156, BioF, 7-keto-8-aminopelargonate synthetas	2e-05
PRK05958	385	PRK05958, PRK05958, 8-amino-7-oxononanoate synthas	3e-04
cd00609	350	cd00609, AAT_like, Aspartate aminotransferase fami	3e-04

>gnl|CDD|215335 PLN02624, PLN02624, ornithine-delta-aminotransferase

 Score =  724 bits (1871), Expect = 0.0
 Identities = 303/378 (80%), Positives = 334/378 (88%), Gaps = 4/378 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KAL EQAEKLTLSSRAFYNDKFP FAE LTSMFGYDMVLPMNTGAEGVETA+KLARKWG
Sbjct: 97  IKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWG 156

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y KK    +EAIIVSCCGCFHGRTLAAISMSCDNEA RGFGPLLPGHLKVDFGD+ ALEK
Sbjct: 157 YEKKGIPKNEAIIVSCCGCFHGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEK 216

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           IF+E GD+IA FLFEPIQGEAGV+IPPDGYLKAVR+LCSK+N+LMIADEIQ+GLAR+G+M
Sbjct: 217 IFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSKHNVLMIADEIQTGLARTGKM 276

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA DWEEVRPD+VILGKALGGGVIPVSAVLADK+VMLCI+PGEHGSTFGGNPLASAVA+A
Sbjct: 277 LACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMA 336

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSA 299
           +L V++DEKLAERSA LG+ELR  L KIQ+QFP  +KEVRGRGL NAV  +   L PVSA
Sbjct: 337 ALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSA 396

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPAD 359
           YD+CLK+KERG+LAKPTHDTI+RL PPLSIS +ELQE SKAL DVLE DLPK++  K   
Sbjct: 397 YDVCLKLKERGLLAKPTHDTIIRLAPPLSISEDELQECSKALSDVLEHDLPKLQSAKKEK 456

Query: 360 APA---TPCHRCGRNLYG 374
            P    TPC RCGRNLY 
Sbjct: 457 TPKAAPTPCDRCGRNLYA 474

Length = 474

>gnl|CDD|130940 TIGR01885, Orn_aminotrans, ornithine aminotransferase

 Score =  579 bits (1495), Expect = 0.0
 Identities = 202/345 (58%), Positives = 261/345 (75%), Gaps = 3/345 (0%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           KAL EQA+KLTLSSRAFYND F  FAE +T +FGYD VLPMNTGAE VETA+KLARKWGY
Sbjct: 60  KALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGY 119

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             K    ++AIIVS  G FHGRTL AISMS D ++   FGP +PG  K+ + ++ ALE+ 
Sbjct: 120 KVKGIPENQAIIVSAKGNFHGRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEA 179

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
            ++ G  +  F+ EPIQGEAGV++P DGYLK VR+LC+K+N+L+IADEIQ+GL R+G++L
Sbjct: 180 LEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKHNVLLIADEIQTGLGRTGKLL 239

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
             D E V+PD+V+LGKAL GGV PVSAVLAD +VML I+PGEHGST+GGNPLA AVA+A+
Sbjct: 240 CVDHENVKPDIVLLGKALSGGVYPVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVAA 299

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L+V+ +EKLAE +  LGE  R  L K+       + EVRGRGL NA+  D++    +A+D
Sbjct: 300 LEVLEEEKLAENAEKLGEIFRDQLKKLP---KPIITEVRGRGLLNAIVIDESKTGRTAWD 356

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +CLK+KE+G+LAKPTH  I+RL PPL I+  +L EG + +  V++
Sbjct: 357 LCLKLKEKGLLAKPTHGNIIRLAPPLVITEEQLDEGLEIIKKVID 401

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis (OMNI|PG1271), and the other from Staphylococcus aureus (OMNI|SA0170). After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis (SP|P38021). Length = 401

>gnl|CDD|240281 PTZ00125, PTZ00125, ornithine aminotransferase-like protein; Provisional

 Score =  493 bits (1271), Expect = e-175
 Identities = 186/335 (55%), Positives = 244/335 (72%), Gaps = 4/335 (1%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
            AL  QA+KLTL+SRAFYND   +  + +T +FGYD VLPMN+GAE  ETALK ARKWGY
Sbjct: 54  AALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGY 113

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             K    ++A I+ C G F GRT+ A S S D +    FGP +PG   VD+ D+ ALEK+
Sbjct: 114 EVKGIPENQAKIIFCNGNFSGRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKL 173

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
            +     +A F+ EPIQGEAGVI+P DGYLK V +LC KYN+L+I DEIQ+GL R+G++L
Sbjct: 174 LQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKYNVLLIVDEIQTGLGRTGKLL 231

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A D E V+PD+V+LGKAL GG+ P+SAVLA+ +VML I+PGEHGST+GGNPLA AVA+ +
Sbjct: 232 AHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEA 291

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L+V+++EKLAE +  LGE  R  L K   +   +VKE+RG+GL NA+ FD +   V+A+D
Sbjct: 292 LEVLKEEKLAENAQRLGEVFRDGL-KELLKKSPWVKEIRGKGLLNAIVFDHSDG-VNAWD 349

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
           +CLK+KE G+LAKPTHD I+R  PPL I+  +L +
Sbjct: 350 LCLKLKENGLLAKPTHDNIIRFAPPLVITKEQLDQ 384

Length = 400

>gnl|CDD|179736 PRK04073, rocD, ornithine--oxo-acid transaminase; Provisional

 Score =  440 bits (1134), Expect = e-155
 Identities = 178/346 (51%), Positives = 243/346 (70%), Gaps = 11/346 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL++QA+K+TL+SRAF++D+   + E++  + G DMVLPMNTGAE VETA+K AR+W 
Sbjct: 62  IQALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWA 121

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K    ++A I++C G FHGRT+AA+S+S + E  RGFGP+LPG  K+ +GD+ AL+ 
Sbjct: 122 YDVKGVEPNKAEIIACEGNFHGRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKA 181

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                    A FL EPIQGEAG+ IPP+G+LKA R+LC + N+L IADEIQ+GL R+G++
Sbjct: 182 AITP---NTAAFLVEPIQGEAGINIPPEGFLKAARELCKEENVLFIADEIQTGLGRTGKL 238

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A DW+ V PDM ILGKALGGGV P+S V A+++++    PG HGSTFGGNPLA AV+IA
Sbjct: 239 FACDWDNVTPDMYILGKALGGGVFPISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIA 298

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +EKL ERS  LGE  ++ L +I    P  +KEVRGRGLF  VE ++ A P    
Sbjct: 299 ALEVLEEEKLPERSLELGEYFKEQLKEI--DNPM-IKEVRGRGLFIGVELNEPARP---- 351

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             C  +KE G+L K TH+T++R  PPL I+  EL    + +  VL 
Sbjct: 352 -YCEALKEEGLLCKETHETVIRFAPPLVITKEELDWAFEKIKAVLS 396

Length = 396

>gnl|CDD|227325 COG4992, ArgD, Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

 Score =  419 bits (1079), Expect = e-146
 Identities = 152/351 (43%), Positives = 207/351 (58%), Gaps = 14/351 (3%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWG 60
           +AL+EQAEKL   S  FYN+     AE+L  +    D V   N+GAE  E ALKLARK+ 
Sbjct: 65  EALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYT 124

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
              +K       I++    FHGRTL A+S +   +  +GFGPLLPG   V F DI ALE 
Sbjct: 125 GDPEKS-----KIIAFENSFHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEA 179

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                 +  A  + EPIQGE GVI  P  +LKA+R+LC ++  L+I DE+Q+GL R+G++
Sbjct: 180 AI---DEDTAAVIVEPIQGEGGVIPAPPEFLKALRELCDEHGALLILDEVQTGLGRTGKL 236

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A +   V PD++ L KALGGG  P+ A+LA +E+     PG+HGSTFGGNPLA AVA+A
Sbjct: 237 FAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGDHGSTFGGNPLACAVALA 295

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
            L+V+ +E L E     GE L Q L ++++++P  VKEVRGRGL   +E  +   P  A 
Sbjct: 296 VLEVLLEEGLLENVREKGEYLLQRLRELKRRYPL-VKEVRGRGLMIGIELKE---PYRAR 351

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK 351
           DI   ++E G+L  P    ++R  PPL I+  E+ E   AL   L     +
Sbjct: 352 DIVRALREEGVLVLPAGPNVIRFLPPLVITEEEIDEALDALERALAAASAR 402

Length = 404

>gnl|CDD|99735 cd00610, OAT_like, Acetyl ornithine aminotransferase family

 Score =  384 bits (990), Expect = e-132
 Identities = 160/366 (43%), Positives = 221/366 (60%), Gaps = 31/366 (8%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPV-FAERLTSMF--GYDMVLPMNTGAEGVETALKLAR 57
           ++AL+EQ  KLT  S  F+ ++  V  AE L ++   G D V  +N+G E VE ALKLAR
Sbjct: 58  VEALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLAR 117

Query: 58  KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---- 113
            +   +KK       I+S  G +HGRTL A+S++   +   GFGPLLPG L V +     
Sbjct: 118 AYTG-RKK-------IISFEGAYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYR 169

Query: 114 -------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166
                  D+ ALE+  +E  +++A  + EPIQGE GVI+PP GYLKA+R+LC K+ IL+I
Sbjct: 170 PPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPPPGYLKALRELCRKHGILLI 229

Query: 167 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGEH 224
           ADE+Q+G  R+G+M A +   V PD+V LGK LGGG+ P+ AVL  +E+M      PG H
Sbjct: 230 ADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLH 288

Query: 225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 284
           G TFGGNPLA A A+A L+V+ +E L E +A LGE LR+ L ++ ++ P  V +VRGRGL
Sbjct: 289 GGTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKHPL-VGDVRGRGL 347

Query: 285 FNAVEFD-----KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK 339
              +E       K      A  I     ERG+L +P+   ++RL PPL I+  E+ EG  
Sbjct: 348 MIGIELVKDRATKPPDKELAAKIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLD 407

Query: 340 ALHDVL 345
           AL + L
Sbjct: 408 ALDEAL 413

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation. Length = 413

>gnl|CDD|234848 PRK00854, rocD, ornithine--oxo-acid transaminase; Reviewed

 Score =  371 bits (953), Expect = e-127
 Identities = 167/345 (48%), Positives = 218/345 (63%), Gaps = 8/345 (2%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + A+ EQA +LTL+SRAF ND+     E L ++ G   VLPMN+GAE VETA+K  RKWG
Sbjct: 63  LAAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWG 122

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A I+ C   FHGRTL+ +  S D +A  GFGP  PG   V FGD  ALE 
Sbjct: 123 YEVKGVPEGQAEIIVCADNFHGRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEA 182

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                      FL EPIQGEAGVIIPP GY   VR+LC+  N+ +I DEIQ+GL R+G++
Sbjct: 183 AITP---NTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTANNVTLILDEIQTGLGRTGKL 239

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA + E +  D+ ++GKAL GG  PVSAVL++ EV+  ++PG+HGSTFGGNPLA AVA A
Sbjct: 240 LAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARA 299

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L V+ +E + E +A +G    + L  I+    N V+EVRGRGL  AVE +  A     Y
Sbjct: 300 ALKVLTEEGMIENAAEMGAYFLEGLRSIRS---NIVREVRGRGLMLAVELEPEAGGARQY 356

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             C  +KERG+LAK THD  +RL PPL I+  ++    + +  VL
Sbjct: 357 --CEALKERGLLAKDTHDHTIRLAPPLVITREQVDWALEQIAKVL 399

Length = 401

>gnl|CDD|235056 PRK02627, PRK02627, acetylornithine aminotransferase; Provisional

 Score =  350 bits (902), Expect = e-119
 Identities = 146/346 (42%), Positives = 209/346 (60%), Gaps = 15/346 (4%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +A+QEQA KL  +S  +Y +     AE+L  + G D V   N+GAE  E A+KLARK+G 
Sbjct: 62  EAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYG- 120

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEK 120
              K  I++  I++    FHGRTLA +S +      + GF PL+ G + V F DI AL+ 
Sbjct: 121 --HKKGIEKPEIITAENSFHGRTLATLSAT-GQPKYQEGFEPLVEGFIYVPFNDIEALKA 177

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                 D+ A  + EPIQGE GV      YL+A+R+LC +  IL+I DE+Q+G+ R+G++
Sbjct: 178 AI---TDKTAAVMLEPIQGEGGVNPADKEYLQALRELCDENGILLILDEVQTGMGRTGKL 234

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     + PD++ L K LGGGV P+ AVLA ++V     PG+HGSTFGGNPLA A A+A
Sbjct: 235 FAYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALA 293

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
            +++I +E L E +A +GE LR  L ++ +++P  +KEVRG GL   +E D+ A      
Sbjct: 294 VIEIIEEEGLLENAAEVGEYLRAKLRELLEKYPG-IKEVRGLGLMIGIELDRPAA----- 347

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +I  K  E+G+L   T D ++RL PPL IS  E+ E    L +VL+
Sbjct: 348 EIVKKALEKGLLINVTGDNVLRLLPPLIISKEEIDEAVDRLEEVLK 393

Length = 396

>gnl|CDD|201078 pfam00202, Aminotran_3, Aminotransferase class-III

 Score =  325 bits (835), Expect = e-110
 Identities = 131/306 (42%), Positives = 190/306 (62%), Gaps = 19/306 (6%)

Query: 1   MKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLAR 57
           ++A++EQA+KLT +S RAF  +     AE+L  +   G D V  MN+G+E  ETA+KLAR
Sbjct: 38  VQAVKEQADKLTHTSFRAFTTEPALQLAEKLAQLTPGGLDRVFFMNSGSEANETAIKLAR 97

Query: 58  KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA 117
           ++   KKK +  +  I++  G FHGRTL A+S++  +   +GFGP LPG   + + D+ A
Sbjct: 98  QYA--KKKGATGKTKIIAFSGGFHGRTLGALSVTGSSGYKKGFGPSLPGVYFLPYPDLEA 155

Query: 118 LEK-----------IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166
            E+           I     D IA  + EPIQGE GV+ PP G+L  +R++C K+ +L+I
Sbjct: 156 AEEELACADEALRLIKAVHDDNIAAVIVEPIQGEGGVVPPPPGFLAGLREICKKHGVLLI 215

Query: 167 ADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS 226
           ADE+Q+G  R+G++ A +   V PD++ L KAL GG +P+SAVLA  E+M    PG HG 
Sbjct: 216 ADEVQTGFGRTGKLFACEHYGVTPDIMTLAKALTGG-LPLSAVLATAEIMQAFHPGSHGG 274

Query: 227 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 286
           TFGGNPLA A A+A LD+I DE L + +   G+ LR+ L  +Q +    + +VRG+GL  
Sbjct: 275 TFGGNPLACAAALAVLDIIEDENLLQNAQEKGDYLRKGLLALQDK--PVIGDVRGKGLMI 332

Query: 287 AVEFDK 292
           A+E  K
Sbjct: 333 AIEIVK 338

Length = 338

>gnl|CDD|223238 COG0160, GabT, 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

 Score =  314 bits (807), Expect = e-104
 Identities = 146/378 (38%), Positives = 215/378 (56%), Gaps = 43/378 (11%)

Query: 1   MKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLA 56
           ++A++ Q  KL    +R  Y + +   AE+LT++    G   V   N+GAE VE A+K+A
Sbjct: 78  VEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIA 137

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD- 114
           R +     +  +     ++  G FHGRTL A+S++      + GFGPL PG   V + + 
Sbjct: 138 RAY---TGRPGV-----IAFDGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNP 189

Query: 115 ----------------ITALEK-IFK--ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                           +  +E+ +F      +++A  + EPIQGE G+I+PP G+LKA+R
Sbjct: 190 YRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIEPIQGEGGIIVPPKGFLKALR 249

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
            LC ++ IL+IADE+Q+G  R+G+M A +   V PD+V L K+LGGG +P+SAV+   E+
Sbjct: 250 KLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGG-LPLSAVVGRAEI 308

Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
           M    PG HG TFGGNP+A A A+A LDVI +E L ER+A LGE LR  L ++Q++ P  
Sbjct: 309 MDW-PPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHP-L 366

Query: 276 VKEVRGRGLFNAVEFDK---TALPVSAY--DICLKMKERG--ILAKPTHDTIVRLTPPLS 328
           + +VRG GL   VE  K   T  P +     I  +  ERG  +L    H  ++R+ PPL+
Sbjct: 367 IGDVRGLGLMIGVELVKDRDTKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLT 426

Query: 329 ISSNELQEGSKALHDVLE 346
           IS  EL EG   L + L+
Sbjct: 427 ISDEELDEGLDILEEALK 444

Length = 447

>gnl|CDD|233098 TIGR00707, argD, transaminase, acetylornithine/succinylornithine family

 Score =  286 bits (734), Expect = 2e-94
 Identities = 133/343 (38%), Positives = 192/343 (55%), Gaps = 14/343 (4%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV 62
           AL+EQ EKL   S  +Y +     AE+L    G D V   N+GAE  E ALKLARK+   
Sbjct: 51  ALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYTGD 110

Query: 63  KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIF 122
           K K   ++  I++    FHGRT+ A+S +   +  +GF PL+PG     + DI +L+K  
Sbjct: 111 KGK---EKKKIIAFENSFHGRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAI 167

Query: 123 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 182
               D+ A  + EPIQGE GV      +LKA+R++C   + L+I DE+Q+G+ R+G+  A
Sbjct: 168 D---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDKDALLIFDEVQTGIGRTGKFFA 224

Query: 183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 242
            +   + PD++ L K LGGGV P+ A LA +EV     PG+HGSTFGGNPLA A A+A L
Sbjct: 225 YEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAVL 283

Query: 243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 302
           +VI  E+L E     G+  ++ L ++ +      KEVRG+GL   +E +         DI
Sbjct: 284 EVIEKERLLENVKEKGDYFKERLEELGK--NYPNKEVRGKGLMLGIELEAPCK-----DI 336

Query: 303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             K  E+G+L       ++R  PPL I+  E+ E   AL + +
Sbjct: 337 VKKALEKGLLVNCAGPKVLRFLPPLIITKEEIDEAVSALEEAI 379

This family of proteins, for which ornithine aminotransferases form an outgroup, consists mostly of proteins designated acetylornithine aminotransferase. However, the two very closely related members from E. coli are assigned different enzymatic activities. One is acetylornithine aminotransferase (EC 2.6.1.11), ArgD, an enzyme of arginine biosynthesis, while another is succinylornithine aminotransferase, an enzyme of the arginine succinyltransferase pathway, an ammonia-generating pathway of arginine catabolism (See MEDLINE:98361920). Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097). Length = 379

>gnl|CDD|179270 PRK01278, argD, acetylornithine transaminase protein; Provisional

 Score =  264 bits (677), Expect = 1e-85
 Identities = 138/352 (39%), Positives = 198/352 (56%), Gaps = 25/352 (7%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPV---FAERLT-SMFGYDMVLPMNTGAEGVETALKLAR 57
           +AL+EQAEKL   S  +   + P     AERL  + F  D V   N+GAE VE A+K AR
Sbjct: 54  EALKEQAEKLWHVSNLY---RIPEQERLAERLVENSFA-DKVFFTNSGAEAVECAIKTAR 109

Query: 58  KWGYVK---KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD 114
           ++ Y K   +++ I     ++  G FHGRTLA I+     + + GFGPL+PG  +V FGD
Sbjct: 110 RYHYGKGHPERYRI-----ITFEGAFHGRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGD 164

Query: 115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174
           I AL+          A  L EPIQGE G+   PD +LK +R LC +  +L+I DE+Q G+
Sbjct: 165 IEALKA---AITPNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDENGLLLIFDEVQCGM 221

Query: 175 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA 234
            R+G++ A +W  V PD++ + K +GGG  P+ A LA +E    + PG HGST+GGNPLA
Sbjct: 222 GRTGKLFAHEWAGVTPDIMAVAKGIGGG-FPLGACLATEEAAKGMTPGTHGSTYGGNPLA 280

Query: 235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294
            AV  A LDVI      +    +G  L+Q L  +  +FP+ ++EVRG+GL   ++     
Sbjct: 281 MAVGNAVLDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLK----- 335

Query: 295 LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             V   D+   +++ G+L     D +VRL PPL I+  E+ E  + L    E
Sbjct: 336 CVVPNRDLVQALRDEGLLTVGAGDNVVRLLPPLIITEEEIDEALERLERAAE 387

Length = 389

>gnl|CDD|235599 PRK05769, PRK05769, 4-aminobutyrate aminotransferase; Provisional

 Score =  262 bits (672), Expect = 3e-84
 Identities = 125/374 (33%), Positives = 203/374 (54%), Gaps = 41/374 (10%)

Query: 2   KALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLAR 57
           KA++EQAEK    S   FY +     AERL  +        V   N+G E  E A+K+AR
Sbjct: 77  KAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIAR 136

Query: 58  KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD-- 114
              +  +K+      I++  G FHGRT  ++S++      R GF PL+PG + V + +  
Sbjct: 137 --YHTGRKY------IIAFLGAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPY 188

Query: 115 ----------------ITALE-KIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                           +  +E  +FK+    +++A  + EPIQGE G ++PP  + K +R
Sbjct: 189 RNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVEPIQGEGGYVVPPKNFFKELR 248

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
            L  KY IL+I DE+Q+G+ R+G+M A +   V PD++ L KA+ GG +P+ AV+   E+
Sbjct: 249 KLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGG-LPLGAVIGRAEL 307

Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
           M  + PG H +TFGGNP+A+A A+A+L+ + +E L E +  LGE LR+ L ++++++  +
Sbjct: 308 MF-LPPGSHANTFGGNPVAAAAALATLEEL-EEGLLENAQKLGEYLRKELKELKEKYE-F 364

Query: 276 VKEVRGRGLFNAVEF---DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN 332
           + +VRG GL   VE     K   P     +  +  +RG+L      + +R+ PPL I+  
Sbjct: 365 IGDVRGLGLMIGVELVKDRKEPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEE 424

Query: 333 ELQEGSKALHDVLE 346
           E   G + L + ++
Sbjct: 425 EADIGLEILEEAIK 438

Length = 441

>gnl|CDD|183175 PRK11522, PRK11522, putrescine--2-oxoglutarate aminotransferase; Provisional

 Score =  262 bits (672), Expect = 4e-84
 Identities = 117/311 (37%), Positives = 189/311 (60%), Gaps = 15/311 (4%)

Query: 43  NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 102
           N+G E VE ALKLA+ +   + KF+      ++  G FHG++L A+S +  +   + F P
Sbjct: 148 NSGTESVEAALKLAKAYQSPRGKFTF-----IATSGAFHGKSLGALSATAKSTFRKPFMP 202

Query: 103 LLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159
           LLPG   V FG+I A+     E   +GD +A  + EPIQGE GVI+PP+GYL AVR LC 
Sbjct: 203 LLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVRKLCD 262

Query: 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI 219
           ++  L+I DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A +EV   +
Sbjct: 263 EFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVL 322

Query: 220 --QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 277
              P  H +TFGGNPLA A A+A+++V+ ++ L  ++   G+ L     ++ +++P+ V+
Sbjct: 323 FDNPFLHTTTFGGNPLACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQ 382

Query: 278 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQ 335
           E RG+G+  A+EF    +    Y+   +M  + +L   T  +   +R+ PPL+++  + +
Sbjct: 383 EARGKGMLMAIEFVDNEI---GYNFASEMFRQRVLVAGTLNNAKTIRIEPPLTLTIEQCE 439

Query: 336 EGSKALHDVLE 346
           +  KA    L 
Sbjct: 440 QVLKAARKALA 450

Length = 459

>gnl|CDD|235112 PRK03244, argD, acetylornithine aminotransferase; Provisional

 Score =  251 bits (644), Expect = 1e-80
 Identities = 130/349 (37%), Positives = 176/349 (50%), Gaps = 25/349 (7%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLARK 58
           +A+  Q   L   S  F  +     AERL  + G      V   N+GAE  E A KLAR 
Sbjct: 66  EAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARL 125

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITA 117
            G  K         IV+  G FHGRT+ A++++    A R  F PL  G   V +GD+ A
Sbjct: 126 TGRTK---------IVAAEGGFHGRTMGALALT-GQPAKRAPFEPLPGGVEHVPYGDVDA 175

Query: 118 LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 177
           L        D  A    EPIQGEAGV+ PP GYL A R++  ++  L++ DE+Q+G+ R+
Sbjct: 176 LAAAV---DDDTAAVFLEPIQGEAGVVPPPAGYLAAAREITDRHGALLVLDEVQTGIGRT 232

Query: 178 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 237
           G   A   + V PD+V L K LGGG +P+ A LA       + PG HGSTFGGNP+A A 
Sbjct: 233 GAWFAHQHDGVTPDVVTLAKGLGGG-LPIGACLAFGPAADLLTPGLHGSTFGGNPVACAA 291

Query: 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 297
           A+A LD I  E L E +  LGE+LR  +  +       V  VRGRGL   +       PV
Sbjct: 292 ALAVLDTIASEGLLENAERLGEQLRAGIEALGHPL---VDHVRGRGLLLGIVLTA---PV 345

Query: 298 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +   +    +E G L       ++RL PPL I+  ++     AL  +L+
Sbjct: 346 AK-AVEAAAREAGFLVNAVAPDVIRLAPPLIITDAQVDAFVAALPAILD 393

Length = 398

>gnl|CDD|223239 COG0161, BioA, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

 Score =  252 bits (646), Expect = 3e-80
 Identities = 131/387 (33%), Positives = 194/387 (50%), Gaps = 51/387 (13%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVF--AERLTSMF---GYDMVLPMNTGAEGVETALKL 55
            +A+++Q +KL       +  + P    AE+L  +    G D V   ++G+E VETALK+
Sbjct: 66  AEAIKKQLDKLPHVMFGGFTHE-PAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKM 124

Query: 56  ARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR--GFGPLLPGHLK 109
           A ++    G  ++K        +S    +HG TL A+S+     A+R   + PLLP  L 
Sbjct: 125 ALQYWRARGQPQRK------KFISRRNGYHGDTLGAMSV-GGPVALRHAFYDPLLPEVLH 177

Query: 110 VDF-----------------GDITALEKIFKESG-DQIAGFLFEPI-QGEAGVIIPPDGY 150
           +                        LE +  E G + IA F+ EP+  G  G+++PP GY
Sbjct: 178 LPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVVGGAGGMLVPPPGY 237

Query: 151 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 210
           LK VR++C KY IL+IADE+ +G  R+G+M A +   + PD++ L K L GG +P+SAVL
Sbjct: 238 LKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVL 297

Query: 211 ADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
               +      G+     HG T+ GNPLA A A+A+LD++ +E L ER A +G  L+  L
Sbjct: 298 TSDRIYEAFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGL 357

Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVSAYD-ICLKMKERGILAKPTHDT 319
                  P  V +VRG GL  A+E       KT         +     ERG+L +P  D 
Sbjct: 358 QAALADHP-LVGDVRGLGLIGAIELVADKATKTPFEARVGARVRAAALERGLLIRPLGDV 416

Query: 320 IVRLTPPLSISSNELQEGSKALHDVLE 346
           I  L PPL I+  E+ E   AL + L+
Sbjct: 417 IY-LMPPLIITREEIDELVDALREALD 442

Length = 449

>gnl|CDD|132415 TIGR03372, putres_am_tran, putrescine aminotransferase

 Score =  237 bits (605), Expect = 2e-74
 Identities = 121/310 (39%), Positives = 186/310 (60%), Gaps = 15/310 (4%)

Query: 43  NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 102
           N+G E VE ALKLA+ +   + KF+      ++  G FHG++L A+S +      + F P
Sbjct: 141 NSGTESVEAALKLAKAYQSPRGKFTF-----IAASGAFHGKSLGALSATAKPAFRKPFMP 195

Query: 103 LLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS 159
           LLPG   V FGDI A+ K   E   +GD +A  + EPIQGE GVI+PP+GYL AVR LC 
Sbjct: 196 LLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVRALCD 255

Query: 160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--ML 217
           ++  L+I DE+Q+G+ R+G+M A + E V+PD++ L KALGGGV+P+ A +A + V  +L
Sbjct: 256 EFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVL 315

Query: 218 CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 277
              P  H +TFGGNPLA A A+A+++ + ++ L  ++A  G+ L     ++  ++P+ + 
Sbjct: 316 FDNPFLHTTTFGGNPLACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLII 375

Query: 278 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQ 335
           E RG+GL  A+EF    +    Y    ++ ++ IL   T  +   +R+ PPL+I+  +  
Sbjct: 376 EARGKGLLMAIEFRDNEI---GYAFAKELFQQNILVAGTLNNAKSIRIEPPLTITIEQCA 432

Query: 336 EGSKALHDVL 345
              KA  D L
Sbjct: 433 LVIKAAKDAL 442

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine [Central intermediary metabolism, Polyamine biosynthesis]. Length = 442

>gnl|CDD|179505 PRK02936, argD, acetylornithine aminotransferase; Provisional

 Score =  234 bits (599), Expect = 4e-74
 Identities = 127/349 (36%), Positives = 185/349 (53%), Gaps = 26/349 (7%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
            KA+QEQ + +   S  F N      A  L      D+V   N+GAE  E ALKLARK  
Sbjct: 51  TKAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARK-- 108

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           +  K      + IV+    FHGRT   +S +   +   GFGPLLPG   V F DI AL++
Sbjct: 109 HTGK------SKIVTFEQSFHGRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKE 162

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +  E   ++A  + E +QGE GVI     +L+ V+ LC K+  L+I DE+Q+G+ R+G +
Sbjct: 163 VMNE---EVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKFGALLIIDEVQTGIGRTGTL 219

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A +   + PD+V + K LG G IPV A++  KE+     PG HGSTFGGNPLA A A  
Sbjct: 220 FAYEQFGLDPDIVTVAKGLGNG-IPVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKE 278

Query: 241 SLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 296
            L VI+     E++ E+  +  ++L++ L    +     VK +RG+GL   +E  +   P
Sbjct: 279 VLQVIKQPSFLEEVQEKGEYFLQKLQEEL----EHLEC-VKNIRGKGLMIGIECTEEVAP 333

Query: 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
           V       +++E G+L       ++RL PPL ++  EL +    L  VL
Sbjct: 334 VIE-----QLREEGLLVLSAGPNVIRLLPPLVVTKEELDQAVYLLKKVL 377

Length = 377

>gnl|CDD|181234 PRK08117, PRK08117, 4-aminobutyrate aminotransferase; Provisional

 Score =  234 bits (600), Expect = 1e-73
 Identities = 125/375 (33%), Positives = 201/375 (53%), Gaps = 44/375 (11%)

Query: 2   KALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARK 58
           +A++EQA+KL    S   Y +     AE L  +   G D     N+GAE +E ALKLA+ 
Sbjct: 66  QAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAK- 124

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD--- 114
             +V K+       I+S  GCFHGRTL A+S++      R  + PLL    +  +     
Sbjct: 125 --HVTKR-----PYIISFTGCFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDR 177

Query: 115 --------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158
                         +  LE +FK   + +++A  + EP+ GE G I+PP  +LK +R++C
Sbjct: 178 CPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVLGEGGYIVPPKSFLKKLREIC 237

Query: 159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC 218
            ++ IL+I DE+Q+G  R+G   A+    V PD++ + K +  G +P+SAV+A KE+M  
Sbjct: 238 DRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASG-LPLSAVVASKELMEQ 296

Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
              G HG+TFGGNP+A A A+A+L+VI++EKL + +  +G    + L  ++++ P  + +
Sbjct: 297 WPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHP-VIGD 355

Query: 279 VRGRGLFNAVEF-DKTALPVSAYDICLKMK----ERGIL---AKPTHDTIVRLTPPLSIS 330
           VRG GL   +E  D    P    D   K+     E+G+L        + ++R+ PPL+++
Sbjct: 356 VRGIGLMIGIEIVDPDGEP--DGDAVEKILDKCLEKGLLFYLCGNAGN-VLRMIPPLTVT 412

Query: 331 SNELQEGSKALHDVL 345
             E+ EG   L + L
Sbjct: 413 KEEIDEGLDILDEAL 427

Length = 433

>gnl|CDD|233000 TIGR00508, bioA, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score =  231 bits (593), Expect = 1e-72
 Identities = 116/383 (30%), Positives = 183/383 (47%), Gaps = 55/383 (14%)

Query: 1   MKALQEQAEKL---TLSSRAFYNDKFPV--FAERLTSMF--GYDMVLPMNTGAEGVETAL 53
             A++EQ +KL           ++  P    AERL  +   G + V   ++G+  VE AL
Sbjct: 53  NAAIKEQLDKLEHVMFGG--LTHE--PAIELAERLVEITPEGLEKVFFSDSGSVAVEVAL 108

Query: 54  KLA--------RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLL 104
           K+A        R     K +F       ++    +HG T  A+S+  D       F PLL
Sbjct: 109 KMALQYWQNQGRP---GKTRF-------LAFRNGYHGDTFGAMSV-GDVGGFHALFEPLL 157

Query: 105 PGHLKVDFGD--------------ITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDG 149
              + +                  + ALE + +E  D+IA F+ EP+ QG  G+   P  
Sbjct: 158 FEVVFIPAPPCYRCWDPDDCEAECLAALEALLEEHADEIAAFIVEPLVQGAGGMRFYPPE 217

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           YL+ +R+LC +Y +L+IADEI +G  R+G++ A +   V PD++ L K L GG +P++A 
Sbjct: 218 YLRKLRELCDEYGVLLIADEIATGFGRTGKLFACEHAGVTPDILCLSKGLTGGYLPLAAT 277

Query: 210 LADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 263
           L   E+       +      HG T+ GNPLA A A+ASLD++ +E   E+ A +  +LR 
Sbjct: 278 LTTDEIYEAFYSDDEGKAFMHGHTYTGNPLACAAALASLDLLEEEDWLEQVARIEAQLRA 337

Query: 264 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRL 323
            L  ++      V +VR  G   AVE  +   P     I     ERG+L +P  + I  L
Sbjct: 338 GLAPLRD--HPGVADVRVLGAIGAVELVRDVEPYIGAKIQQFFLERGVLLRPLGNVIY-L 394

Query: 324 TPPLSISSNELQEGSKALHDVLE 346
            PP  I+  EL++ + A+ + ++
Sbjct: 395 MPPYIITDEELEKLTAAIKEAID 417

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae [Biosynthesis of cofactors, prosthetic groups, and carriers, Biotin]. Length = 417

>gnl|CDD|179933 PRK05093, argD, bifunctional N-succinyldiaminopimelate- aminotransferase/acetylornithine transaminase protein; Reviewed

 Score =  231 bits (591), Expect = 1e-72
 Identities = 119/349 (34%), Positives = 175/349 (50%), Gaps = 12/349 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           +KAL+EQ EKL   S  F N+     A++L      + V   N+GAE  E A KLAR++ 
Sbjct: 62  VKALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYA 121

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
               +   ++  I++    FHGRTL  +S+    +   GFGP       V F D+ A++ 
Sbjct: 122 C--DRHGPEKTEIIAFHNSFHGRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKA 179

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +     D     + EPIQGE GVI     +L+ +R+LC ++N L+I DE+Q+G+ R+G +
Sbjct: 180 VI---DDHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQHNALLIFDEVQTGMGRTGDL 236

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   KALGGG  P+ A+L   E+    + G HGST+GGNPLA AVA A
Sbjct: 237 FAYMHYGVTPDILTSAKALGGG-FPIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEA 295

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
             D+I   ++ E      +     L KI Q++     E+RG GL    E  K      A 
Sbjct: 296 VFDIINTPEVLEGVKARRQRFVDGLQKINQKY-GVFSEIRGMGLLIGAEL-KPQYKGRAR 353

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG----SKALHDVL 345
           D      E G++       ++R  P L I   ++ EG     KA+  V+
Sbjct: 354 DFLNAAAEEGVMVLVAGPDVLRFAPSLVIEEADIDEGLARFEKAVAKVV 402

Length = 403

>gnl|CDD|177748 PLN00144, PLN00144, acetylornithine transaminase

 Score =  220 bits (563), Expect = 8e-69
 Identities = 126/351 (35%), Positives = 181/351 (51%), Gaps = 15/351 (4%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           KA+ EQA  L   S  ++       A+RL +    D V   N+G E  E A+K ARK+  
Sbjct: 38  KAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQR 97

Query: 62  VKKKFSIDEAII-----VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT 116
           V+     D A       VS    FHGRTL A++++   +    F PL+PG   V++G++ 
Sbjct: 98  VRAPDKKDPAASSATEFVSFSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLE 157

Query: 117 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176
           A  K+ ++   + A    EP+QGE G+      +L+ +R LC +   L++ DE+Q GL R
Sbjct: 158 AARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLRALCDEAGALLVFDEVQCGLGR 215

Query: 177 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA 236
           +G + A +   V PD++ L K L GG +P+ AVL  ++V   I PG+HGSTF G PL   
Sbjct: 216 TGYLWAHEAYGVEPDIMTLAKPLAGG-LPIGAVLVTEKVASAINPGDHGSTFAGGPLVCN 274

Query: 237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP 296
            A+A LD I         A  GE LR+ L +     P +VKEVRG GL   ++ D  A P
Sbjct: 275 AALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNP-HVKEVRGVGLLVGIQLDVPAGP 333

Query: 297 VSAYDICLKMKERGILA-KPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +   D C    + G+L        +VRL PPL IS  EL++  + L D L 
Sbjct: 334 L--VDACR---DSGLLVLTAGKGDVVRLVPPLVISEAELEQAVEILADCLP 379

Length = 382

>gnl|CDD|132290 TIGR03246, arg_catab_astC, succinylornithine transaminase family

 Score =  215 bits (549), Expect = 2e-66
 Identities = 117/336 (34%), Positives = 174/336 (51%), Gaps = 8/336 (2%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           KAL EQA+KL      + N+     A++L      D V   N+GAE  E ALKLAR++  
Sbjct: 58  KALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYAL 117

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
              K   D++ IV+    FHGRTL  +S+    +  +GF PL  G     + D+ A + +
Sbjct: 118 --DKHGADKSEIVAFKNSFHGRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKAL 175

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                D+    + EPIQGE GV+     +LK +R+LC ++N L+I DE+Q+G+ R+G + 
Sbjct: 176 I---SDKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRHNALLIFDEVQTGVGRTGELY 232

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A     V PD++   KALGGG  P+ A+L   E+   ++ G HG+T+GGNPLA AVA   
Sbjct: 233 AYMHYGVTPDILTSAKALGGG-FPIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKV 291

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           LD++   +L        +     L KI  ++ N   E+RG+GL       + A    A  
Sbjct: 292 LDLVNTPELLAGVKQRHDLFVDGLEKINARY-NVFSEIRGKGLLIGAVLTE-AYQGKAKQ 349

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
                 E G++A      +VR  P L IS +++ EG
Sbjct: 350 FVNAAAEEGVIALIAGPNVVRFAPSLVISDDDIDEG 385

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason [Energy metabolism, Amino acids and amines]. Length = 397

>gnl|CDD|179868 PRK04612, argD, acetylornithine transaminase protein; Provisional

 Score =  212 bits (541), Expect = 2e-65
 Identities = 135/344 (39%), Positives = 188/344 (54%), Gaps = 11/344 (3%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERL--TSMFGYDMVLPMNTGAEGVETALKLARK 58
           + AL EQA KL  +S  FY+      AE L   S F   + L  N+G E  E A+KL RK
Sbjct: 62  VAALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFL-CNSGTEANEAAIKLVRK 120

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 118
           W   + + + D+ +IV+  G FHGRTLAA++ +   +   G+ PL  G   VDF D+ AL
Sbjct: 121 WASSQGRPA-DKRVIVTFRGSFHGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEAL 179

Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
           E      GD +A  + EPIQGE GV+    G+L  VR LC +++ L++ DEIQ G+ R+G
Sbjct: 180 EAAMA-GGD-VAAVMLEPIQGEGGVMPAAPGFLARVRALCDQHDALLVLDEIQCGMGRTG 237

Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238
            + A   E+V PD+V L KALGGG  P+ A+LA  +V   +Q G HG+TFGGNPLA+AVA
Sbjct: 238 TLFAHWQEQVTPDIVTLAKALGGG-FPIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVA 296

Query: 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-FNAVEFDKTALPV 297
             +L  +   ++A   A     LR  L  +  +F  +  +VRGRGL   AV     A   
Sbjct: 297 RVALRKLASPQIAANVARQSAALRAGLEALNAEFGVF-AQVRGRGLMLGAVLAPAHAGQA 355

Query: 298 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
            A  I     E G+L       ++R  P L+++  EL +G   L
Sbjct: 356 GA--ILDLAAEHGLLLLQAGPDVLRFVPALNLTDAELADGLARL 397

Length = 408

>gnl|CDD|179636 PRK03715, argD, acetylornithine transaminase protein; Provisional

 Score =  209 bits (535), Expect = 2e-64
 Identities = 117/344 (34%), Positives = 182/344 (52%), Gaps = 11/344 (3%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +AL  QAEKL   S AFYN+     A  LT    +D V   N+GAE  E A+KLARKWG 
Sbjct: 59  EALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWGR 118

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             K  + +   I++    FHGRTLA +S S        F P +PG  K +  DI ++EK+
Sbjct: 119 KHKNGAYE---IITFDHSFHGRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKL 175

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                D+    + EP+QGE GVI     +++ +R L  ++ +L+I DE+Q+G  R+G + 
Sbjct: 176 I---TDKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQHGLLLIVDEVQTGCGRTGTLF 232

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A +   + PD++ LGK +GGGV P++A+LA  EV    + G+ G T+ GNPL +AV +A 
Sbjct: 233 AYELSGIEPDIMTLGKGIGGGV-PLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAV 290

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           +  +      E     GE L++ L ++ ++    ++  RG GL  A+   K   P    +
Sbjct: 291 ISQLLAPGFLEGVRARGEYLKEKLLELSEERG--LEGERGEGLLRALLLGKDIGP-QIVE 347

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
               M+  G+L       ++R  P L++++ E+ +    L  VL
Sbjct: 348 KARDMQPDGLLLNAPRPNLLRFMPALNVTTEEIDQMIAMLRSVL 391

Length = 395

>gnl|CDD|236032 PRK07495, PRK07495, 4-aminobutyrate aminotransferase; Provisional

 Score =  210 bits (536), Expect = 3e-64
 Identities = 126/378 (33%), Positives = 200/378 (52%), Gaps = 37/378 (9%)

Query: 1   MKALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFGYDMV---LPMNTGAEGVETALKLA 56
           + A++ Q ++ T +  +    + +   AERL ++   D     + + TGAE VE A+K+A
Sbjct: 62  IAAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIA 121

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF--- 112
           R         +   + +++  G FHGRT   +S++      + GFG ++P    V F   
Sbjct: 122 RA--------ATGRSAVIAFGGGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVE 173

Query: 113 -------GDITALEKIFKESGD--QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                    + AL+K+FK   D  ++A  + EP+QGE G    P  ++KA+R+LC ++ I
Sbjct: 174 LHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFYPAPAAFMKALRELCDQHGI 233

Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE 223
           L+IADE+Q+G AR+G++ A +  EV  D+  + K L GG  P++AV    E+M    PG 
Sbjct: 234 LLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGG-FPLAAVTGRAEIMDAPGPGG 292

Query: 224 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 283
            G T+GGNPL  A A A LDVI +E L ER+  LG  L+Q L  +++  P    ++RG G
Sbjct: 293 LGGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVPEIA-DIRGPG 351

Query: 284 LFNAVEFD--KTALPVS--AYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEG 337
             NAVEF+   + LP +  A  + LK  E+G  +L    H  ++R   P++I  +   E 
Sbjct: 352 FMNAVEFNDADSGLPSAEFANRVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAE- 410

Query: 338 SKALHDVLELDLPKMRKP 355
             AL D+LE  + +    
Sbjct: 411 --AL-DILEASILEASAA 425

Length = 425

>gnl|CDD|129783 TIGR00700, GABAtrnsam, 4-aminobutyrate aminotransferase, prokaryotic type

 Score =  207 bits (527), Expect = 5e-63
 Identities = 108/374 (28%), Positives = 168/374 (44%), Gaps = 43/374 (11%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPVFAE------RLTSMFGYDMVLPMNTGAEGVETALKLA 56
           A++ Q  + T +   F    +  +        R+    G    +  N+GAE VE A+K+A
Sbjct: 57  AVRTQVAEFTHT--CFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIA 114

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDF--- 112
           R   Y  +        +V+    FHGRT   ++++      + GFGP  P   +      
Sbjct: 115 RS--YTGRP------GVVAFDHGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYP 166

Query: 113 -------------GDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157
                        G++ A   IF      + +A  + EP+QGE G I+P  G++ A+ D 
Sbjct: 167 YRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQGEGGFIVPAKGFVPALLDW 226

Query: 158 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
           C ++ I+ IADE+Q+G AR+G M A + E   PD++   K+L  G +P+S V    E+M 
Sbjct: 227 CREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADG-LPLSGVTGRAEIMD 285

Query: 218 CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 277
              PG  G T+ GNPLA A A+A L +I  E L ER+  +G  +   L  ++   P  + 
Sbjct: 286 APAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDP-RIG 344

Query: 278 EVRGRGLFNAVEFDKTALPVSAYDICLKMKERG------ILAKPTHDTIVRLTPPLSISS 331
           +VRG G   AVE            +  ++          +L       I+R  PPL+I  
Sbjct: 345 DVRGLGAMIAVELVDPGTTEPDAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGD 404

Query: 332 NELQEGSKALHDVL 345
             L EG   L  +L
Sbjct: 405 ELLSEGLDILCAIL 418

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known bacterial examples of the enzyme. The best archaeal matches are presumed but not trusted to have the equivalent function. The degree of sequence difference between this set and known eukaryotic (mitochondrial) examples is greater than the distance to some proteins known to have different functions, and so separate models are built for prokaryotic and eukaryotic sets. E. coli has two isozymes. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 420

>gnl|CDD|101376 PRK04013, argD, acetylornithine/acetyl-lysine aminotransferase; Provisional

 Score =  200 bits (511), Expect = 2e-61
 Identities = 122/343 (35%), Positives = 181/343 (52%), Gaps = 34/343 (9%)

Query: 4   LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 63
           + EQ EKL ++   F +++     E L+    Y+ V   N+G E VE ALK AR +   K
Sbjct: 49  MSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLYTGRK 108

Query: 64  KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL-EKIF 122
           +        I++    FHGRT+ A+S +   +    F PL+PG   + F D+ A  E I 
Sbjct: 109 E--------IIAMTNAFHGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT 160

Query: 123 KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 182
           KE+    A  +FEPIQGE G++   + ++K +RDL      L+IADE+QSGL R+G+ LA
Sbjct: 161 KET----AAVIFEPIQGEGGIVPAKEEFVKTLRDLTEDVGALLIADEVQSGL-RTGKFLA 215

Query: 183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL 242
            +  +V PD+V +GK +G GV PVS  L + +V    + G+HGSTFGGNPLA      +L
Sbjct: 216 IEHYKVEPDIVTMGKGIGNGV-PVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAVTL 270

Query: 243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI 302
            ++R E+L E++            K  +     V   RGRGL   +   K   PV  Y  
Sbjct: 271 RILRRERLVEKAGE----------KFIEIKGERVVTTRGRGLMIGIVLKK---PVGKY-- 315

Query: 303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             +++ RG L       ++RL PPL IS + ++E   A+  V+
Sbjct: 316 VEELQNRGYLVHTAGQRVIRLLPPLIISKDTMEEAKSAIEGVI 358

Length = 364

>gnl|CDD|235885 PRK06918, PRK06918, 4-aminobutyrate aminotransferase; Reviewed

 Score =  200 bits (511), Expect = 3e-60
 Identities = 121/378 (32%), Positives = 198/378 (52%), Gaps = 45/378 (11%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVF---AERLTSMF--GYD-MVLPMNTGAEGVETALKL 55
           +AL +Q ++   +   F    +  +   AE+L ++    +D  VL +N+GAE VE A+K+
Sbjct: 77  EALHKQVDQYIHT--GFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKI 134

Query: 56  ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD 114
           ARK  Y K++       I+S    FHGRTL  ++M+   +  + GFGP  P   K  F  
Sbjct: 135 ARK--YTKRQ------GIISFSRGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPY 186

Query: 115 -----------------ITALEKIFKESGD--QIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                            I   +  F        IA  + EP+QGE G I+P   +++ VR
Sbjct: 187 EYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPVQGEGGFIVPSKKFVQEVR 246

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
           ++CS++ IL +ADEIQ+G AR+G+  A +  +V PD++ + K+LG GV P+S V+  KE+
Sbjct: 247 NICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEI 305

Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
           M    PGE G T+ G+PL  A A+A LD+I  E L +R+  LG+ +     +++ ++   
Sbjct: 306 MDESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYN-C 364

Query: 276 VKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLS 328
           + +VRG G   A E       K        +IC +  +RG  +L+  T+  ++R+  PL 
Sbjct: 365 IGDVRGLGAMCAFELVQDRKTKEPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLV 424

Query: 329 ISSNELQEGSKALHDVLE 346
           I+  +L+EG   + + L+
Sbjct: 425 ITDEQLEEGLTIIEESLQ 442

Length = 451

>gnl|CDD|181493 PRK08593, PRK08593, 4-aminobutyrate aminotransferase; Provisional

 Score =  198 bits (505), Expect = 1e-59
 Identities = 108/391 (27%), Positives = 183/391 (46%), Gaps = 57/391 (14%)

Query: 2   KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLAR 57
           +A++ QA+K    + A  Y++     A++L  +        V    +G++  +  +K AR
Sbjct: 65  EAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFAR 124

Query: 58  KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI-----RGFGPLLPGHLKVDF 112
              Y  + +      I+S    +HG T  ++SMS     I     R +GPLLPG + + F
Sbjct: 125 --AYTGRPY------IISFTNAYHGSTYGSLSMS----GISLNMRRKYGPLLPGFVHIPF 172

Query: 113 GDITALEKIFKES---------------------GDQIAGFLFEPIQGEAGVIIPPDGYL 151
            D      +++E                       D++A  + E IQG+ G++ P  GY 
Sbjct: 173 PDKY--RGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETIQGDGGLLEPVPGYF 230

Query: 152 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLA 211
           +A+   C ++ IL   D+IQ GL R+G+  +     + PD++  GK+L GG +P+SA++ 
Sbjct: 231 EALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGG-MPMSAIVG 289

Query: 212 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 271
            KE+M  ++   H  T G NP++ A A+A++D+I DE L +RSA  GE  R+   +   +
Sbjct: 290 RKEIMESLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSK 349

Query: 272 FPNYVKEVRGRGLFNAVEF-----DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP 326
           +  +V +VRG GL   ++       KT    +A  IC    E G++       ++R  PP
Sbjct: 350 YN-FVGDVRGYGLSIGIDIVSDKKLKTRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPP 408

Query: 327 LSISSNELQEGSKALHDVLE------LDLPK 351
           L I+  +L      +           LD P 
Sbjct: 409 LVITYEQLDTALNTIEQAFTALEAGKLDQPD 439

Length = 445

>gnl|CDD|180690 PRK06777, PRK06777, 4-aminobutyrate aminotransferase; Provisional

 Score =  195 bits (496), Expect = 2e-58
 Identities = 114/318 (35%), Positives = 180/318 (56%), Gaps = 34/318 (10%)

Query: 44  TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGP 102
           TGAE VE A+K+AR   Y  +        +++  G FHGRTL  ++++      + GFGP
Sbjct: 109 TGAEAVENAVKIAR--AYTGRPG------VIAFGGAFHGRTLLTMALTGKVAPYKVGFGP 160

Query: 103 LLPGHL----------KVDFGD-ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDG 149
             PG +           V   + ++++E++FK   + DQ+A  L EPIQGE G  + P  
Sbjct: 161 F-PGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFNVAPPE 219

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           ++ A+R LC ++ IL+IADE+Q+G AR+G++ A ++ +V+PD++ + K+LGGG +P+SAV
Sbjct: 220 FMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGG-MPISAV 278

Query: 210 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 269
           +   EVM    PG  G T+ GNPLA A A+A LDVI +EKL +R+  LG  L + L K +
Sbjct: 279 VGRAEVMDAPAPGGLGGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAK 338

Query: 270 QQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG------ILAKPTHDTIVRL 323
              P  + ++R RG   AVEF+       + +   + + +       +L+   H  ++R 
Sbjct: 339 ASCP-AIVDIRARGSMVAVEFNDPQTGKPSPEFTRQYQRQALEEGLLLLSCGVHGNVIRF 397

Query: 324 TPPLSISSNELQEGSKAL 341
             PL+I   +    SKAL
Sbjct: 398 LYPLTIPDAQF---SKAL 412

Length = 421

>gnl|CDD|235685 PRK06058, PRK06058, 4-aminobutyrate aminotransferase; Provisional

 Score =  195 bits (497), Expect = 2e-58
 Identities = 102/328 (31%), Positives = 162/328 (49%), Gaps = 38/328 (11%)

Query: 43  NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFG 101
           N+GAE VE A+K+AR   Y  ++       +V     +HGRT   ++++  +   + GFG
Sbjct: 124 NSGAEAVENAVKIARS--YTGRQ------AVVVFDHAYHGRTNLTMALTAKSMPYKSGFG 175

Query: 102 PLLPGHLKV----DFGDIT------------ALEKIFKESG-DQIAGFLFEPIQGEAGVI 144
           P  P   +      + D              A+  I K+ G D +A  + EPIQGE G I
Sbjct: 176 PFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQGEGGFI 235

Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
           +P +G+L A+ + C +  ++ IADE+Q+G AR+G   A + E + PD++   K + GG +
Sbjct: 236 VPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGG-L 294

Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
           P+SAV    E+M    PG  G T+GGNP+A A A+A+++ I ++ L  R+  +   +   
Sbjct: 295 PLSAVTGRAEIMDAPHPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDR 354

Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF----DKTALPVSAYDICLKMKERG--ILAKPTHD 318
           L  +  +    + +VRGRG   A+E                +       G  +L   T+ 
Sbjct: 355 LRALAAEDD-RIGDVRGRGAMIAIELVKPGTTEPDAELTKALAAAAHAAGVIVLTCGTYG 413

Query: 319 TIVRLTPPLSISSNELQEGSKALHDVLE 346
            ++RL PPL I    L+EG     DVLE
Sbjct: 414 NVIRLLPPLVIGDELLREGL----DVLE 437

Length = 443

>gnl|CDD|235884 PRK06917, PRK06917, hypothetical protein; Provisional

 Score =  194 bits (494), Expect = 7e-58
 Identities = 121/399 (30%), Positives = 199/399 (49%), Gaps = 54/399 (13%)

Query: 3   ALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKW 59
           A++EQAE+++   R+ F ++     A++L+ +   D+     +N+G+E  ETA+K+A + 
Sbjct: 55  AIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQ- 113

Query: 60  GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVD 111
            + +++    +  I+S    +HG T+ A+SMS      + F  LL        P   +  
Sbjct: 114 -HFQERGIQGKHKILSRWMSYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCP 172

Query: 112 FGD-------------ITALEKIFKESGDQIAGFLFEPIQGEAG-VIIPPDGYLKAVRDL 157
                            TA+E+I  E    IA F+ EPI G AG  ++PP GY K ++++
Sbjct: 173 VQKVYPTCQLACATELETAIERIGAE---HIAAFIAEPIIGAAGAAVVPPKGYYKVIKEI 229

Query: 158 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
           C  Y+IL IADE+ +GL R+G M A +   V PD++ LGK LG G  P++A +    VM 
Sbjct: 230 CDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVME 289

Query: 218 CIQPGEH----GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP 273
            I  G      G T   NPL++A A+A L+ +    L E++A  GE L + L K+QQQ  
Sbjct: 290 PILRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQST 349

Query: 274 NYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPTHDTI----- 320
             + +VRG+GL   VEF      K     S   A ++     + G+L  P          
Sbjct: 350 -IIGDVRGKGLLIGVEFVADKKTKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEG 408

Query: 321 --VRLTPPLSISSNELQE----GSKALHDVLELDLPKMR 353
             V + PP++I+ +EL E     +K++ ++++     + 
Sbjct: 409 DAVIIAPPMTITYSELDELLSIFAKSVEEMMQKGGHSIA 447

Length = 447

>gnl|CDD|180390 PRK06082, PRK06082, 4-aminobutyrate aminotransferase; Provisional

 Score =  193 bits (491), Expect = 2e-57
 Identities = 106/375 (28%), Positives = 182/375 (48%), Gaps = 38/375 (10%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK 58
           ++ ++EQ  KL  S R F N+     AE+LT + G ++  VL    G   +  ALKLAR 
Sbjct: 93  IEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARH 152

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV-------- 110
              +   F +     VS    FHG +L AIS+  +    +G GPL+ G  ++        
Sbjct: 153 ---ITGNFKV-----VSLWDSFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRG 204

Query: 111 -----DFGDITA---LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN 162
                D  D+     LE + ++ G  I  F+ E ++    V +P   Y K VR++C K+N
Sbjct: 205 AFPDADGSDVHYADYLEYVIEKEGG-IGAFIAEAVRN-TDVQVPSKAYWKRVREICDKHN 262

Query: 163 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG 222
           +L+I DEI +G+ R+G         + PD++ +GK LGGG++P++A++   +     Q  
Sbjct: 263 VLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQIS 322

Query: 223 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 282
               T   +PL  A A+A+++VI  E L E+     + +R+ L +++ ++P  + +VRG 
Sbjct: 323 LGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYP-LIGDVRGI 381

Query: 283 GLFNAVEF-----DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
           GL   VE       K      A  +  +    G+  K +   +++L+PPL I+  EL + 
Sbjct: 382 GLLWGVELVTDRHTKERAYDEAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQA 441

Query: 338 ----SKALHDVLELD 348
                +A+  + +  
Sbjct: 442 LAILEEAIAKICQDF 456

Length = 459

>gnl|CDD|183486 PRK12381, PRK12381, bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

 Score =  187 bits (477), Expect = 1e-55
 Identities = 113/340 (33%), Positives = 169/340 (49%), Gaps = 16/340 (4%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +AL EQA K   +   + N+     A++L      D V   N+GAE  E ALKLARK  Y
Sbjct: 62  EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK--Y 119

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
              ++   ++ IV+    FHGRTL  +S     +  + F PL P      + D+ +   +
Sbjct: 120 AHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASAL 179

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                DQ    + EPIQGE GVI     +L+ +R+LC ++N L+I DE+Q+G+ R+G + 
Sbjct: 180 ID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRHNALLIFDEVQTGVGRTGELY 236

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A     V PD++   KALGGG  P+ A+L  ++    +  G HG+T+GGNPLASAVA   
Sbjct: 237 AYMHYGVTPDVLTTAKALGGG-FPIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKV 295

Query: 242 LDVIRD-EKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPV 297
           L++I   E L    +R     E L      I  ++  +  E+RG GL      +      
Sbjct: 296 LELINTPEMLNGVKQRHDWFVERLNT----INARYGLF-SEIRGLGLLIGCVLNA-EYAG 349

Query: 298 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
            A  I  +  + G++       +VR  P L+IS  E+  G
Sbjct: 350 KAKQISQEAAKAGVMVLIAGPNVVRFAPALNISEEEITTG 389

Length = 406

>gnl|CDD|168967 PRK07481, PRK07481, hypothetical protein; Provisional

 Score =  181 bits (462), Expect = 3e-53
 Identities = 111/384 (28%), Positives = 183/384 (47%), Gaps = 43/384 (11%)

Query: 2   KALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLA 56
           +A+  Q ++L   S      + +    +  L  MF  +    V   + G++ VETALKLA
Sbjct: 65  EAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLA 124

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----- 111
           R+  Y K +   +    +S    +HG      S++ +    R + PLLPG   V+     
Sbjct: 125 RQ--YWKVRGQPERTKFISLKQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLY 182

Query: 112 ---FGD----------ITALEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157
              F +             LE+ I  +  D IA F+ EP+QG  GVI+PP  +   VR++
Sbjct: 183 RNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPVQGAGGVIVPPANFWPLVREV 242

Query: 158 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
           C ++ IL+IADE+ +G  R+G    S    V+PD++ L K +  G +P+ A + +  +  
Sbjct: 243 CDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIAD 302

Query: 218 CIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ 270
             +          HG T+ G+P+A A A+A+LD++  E L   +A  G  L + L  +++
Sbjct: 303 AFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKE 362

Query: 271 QFPNYVKEVRGRGLFNAVEF--DK-TALPVSAYDICLKM-----KERGILAKPTHDTIVR 322
           +F   V +VRG+GL  A++   DK T  P+              +E G+L +P+   I+ 
Sbjct: 363 RFE-LVGDVRGKGLMLALDLVADKATREPIDPSKGYANAVADVARENGVLVRPSGTKII- 420

Query: 323 LTPPLSISSNELQEGSKALHDVLE 346
           L+PPL I   ++     AL   L 
Sbjct: 421 LSPPLVIQREDVDRIVDALDAGLS 444

Length = 449

>gnl|CDD|235687 PRK06062, PRK06062, hypothetical protein; Provisional

 Score =  181 bits (462), Expect = 4e-53
 Identities = 112/381 (29%), Positives = 186/381 (48%), Gaps = 52/381 (13%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLAR-KW 59
           A+QEQA +L   + A  ND     A  +          V   N GA+  E A+++AR   
Sbjct: 77  AIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHT 136

Query: 60  GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-----NEAIRG-----FGPLLPGHLK 109
           G  K         ++S    +HG T +AI+++ D     N+  R      FGP L    +
Sbjct: 137 GRPK---------VLSAYRSYHGGTGSAINLTGDPRRWPNDTGRAGVVHFFGPFL---YR 184

Query: 110 VDFGDITA----------LEKIFK-ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158
            +F   T           LE++ + E    IA  L E + G AG+++PP GYL  VR+LC
Sbjct: 185 SEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPGTAGILVPPPGYLAGVRELC 244

Query: 159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--M 216
            ++ I++IADE+ +G  R+G+  A +   V PD++   K +  G +P+  V   + +   
Sbjct: 245 DRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAAT 304

Query: 217 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE-LRQHLFKIQQQFPNY 275
              +P   G T+ G+PLA A A+A+++ + +E + E +A +G E L   L ++ ++ P+ 
Sbjct: 305 FADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHPS- 363

Query: 276 VKEVRGRGLFNAVEF---DKTALPVSAYDICLK--------MKERGILAKPTHDTIVRLT 324
           V EVRG G+F A+E     +T  P++ Y              KERG+L    +   + + 
Sbjct: 364 VGEVRGLGVFWALELVADRETREPLAPYGASSAAMAAVKAACKERGLLPF-VNGNRIHVV 422

Query: 325 PPLSISSNELQEGSKALHDVL 345
           PP +++ +E++EG   L   L
Sbjct: 423 PPCTVTEDEVREGLAILDAAL 443

Length = 451

>gnl|CDD|181401 PRK08360, PRK08360, 4-aminobutyrate aminotransferase; Provisional

 Score =  181 bits (460), Expect = 7e-53
 Identities = 113/389 (29%), Positives = 196/389 (50%), Gaps = 57/389 (14%)

Query: 1   MKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYDMVLPMN--------TGAEGVET 51
           +KA++EQ +KL   +  + +  +  + AE+L        + P +        +G++  + 
Sbjct: 63  VKAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIE------IAPGDNPKVSFGLSGSDANDG 116

Query: 52  ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNEAIRGFGPL------- 103
           A+K AR   Y K++       I+S    ++G T  A+S++  D       G L       
Sbjct: 117 AIKFAR--AYTKRR------KILSYLRSYYGSTYGAMSLTGLDFPVRALVGELSDVHYIP 168

Query: 104 LPGHLKVDFG------DITALEKIFKES------GDQIAGFLFEPIQGEAGVIIPPDGYL 151
            P   +  FG       +  +E I KE        + +A    EPIQG+AG+I+PP+ Y 
Sbjct: 169 YPDCYRCPFGKEPGSCKMECVEYI-KEKFEGEVYAEGVAALFAEPIQGDAGMIVPPEDYF 227

Query: 152 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLA 211
           K ++ +  ++ IL++ DE+QSGL R+G+  A +   V PD++ LGK LGGG +P+SA + 
Sbjct: 228 KKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGG-LPISATIG 286

Query: 212 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 271
             E+M  + P  H  T  GNP+ASA A+A ++ I ++ L +R+  LG   ++ L +++++
Sbjct: 287 RAEIMDSLPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKK 346

Query: 272 FPNYVKEVRGRGLFNAVEF--DKTALPVSAYD----ICLKMKERGILAKPTHDTIVRLTP 325
               + +VRG GL   V+   D+      AY+    +  +  E G++       ++R+ P
Sbjct: 347 HE-LIGDVRGIGLMIGVDLVKDRET-KERAYEEAAKVVWRAWELGLIVTFFSGNVLRIQP 404

Query: 326 PLSISSNELQEG----SKALHDVLELDLP 350
           PL+I    L EG     +A+ DV E  +P
Sbjct: 405 PLTIEKEVLDEGLDILEEAIEDVEEGKVP 433

Length = 443

>gnl|CDD|180746 PRK06916, PRK06916, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  180 bits (458), Expect = 2e-52
 Identities = 106/347 (30%), Positives = 171/347 (49%), Gaps = 54/347 (15%)

Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLA----RKWGYVKK-KFSIDEAIIVSCCGCFHG 82
           E L  +F  D      +GA  VE A+K+A    +  G  KK +F       V+    +HG
Sbjct: 114 EGLKKVFYSD------SGATAVEIAIKMAFQYWQNKGKPKKQRF-------VTLKNAYHG 160

Query: 83  RTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------GD---------ITALEKIFKES 125
            T+ A+S+   +   + +  LL   +K+ +        G+         +  LE++ KE 
Sbjct: 161 DTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEK 220

Query: 126 GDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 184
            ++IA  + EP +QG  G+I  P GYLK +R+LC+KYN+L I DE+ +G  R+G+M A +
Sbjct: 221 HEEIAAIIVEPLVQGAGGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACE 280

Query: 185 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLASAV 237
            E V PD++  GK L GG +P++  +   E+               HG ++ GNPL  AV
Sbjct: 281 HENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFYGDYEEQKTFFHGHSYTGNPLGCAV 340

Query: 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DK-TA 294
           A+A+L++     L E+ A   E +   L  +      +V ++R  GL   +E   +K T 
Sbjct: 341 ALANLELYEKTNLIEQVARKTEYVATQLEDLFAL--KHVGDIRQLGLMVGIELVKNKETK 398

Query: 295 LPVS-----AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
            P          +C + +E G+L +P  +TIV   PPL+ + +EL E
Sbjct: 399 EPFEWTERVGVQVCKRSRELGMLTRPLGNTIV-FMPPLASTIDELDE 444

Length = 460

>gnl|CDD|182078 PRK09792, PRK09792, 4-aminobutyrate transaminase; Provisional

 Score =  179 bits (454), Expect = 2e-52
 Identities = 107/323 (33%), Positives = 164/323 (50%), Gaps = 31/323 (9%)

Query: 44  TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGP 102
           TGAE VE A+K+AR               +++  G FHGRT   ++++      + GFGP
Sbjct: 109 TGAEAVENAVKIARA--------HTGRPGVIAFSGGFHGRTYMTMALTGKVAPYKIGFGP 160

Query: 103 LLPG-----------HLKVDFGDITALEKIFKESGD--QIAGFLFEPIQGEAGVIIPPDG 149
             PG           H       + A+E++FK   +  Q+A  +FEP+QGE G  + P  
Sbjct: 161 F-PGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFNVAPKE 219

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
            + A+R LC ++ I+MIADE+QSG AR+G++ A D    +PD++ + K+L GG +P+S V
Sbjct: 220 LVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGG-MPLSGV 278

Query: 210 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 269
           + +  +M    PG  G T+ GNPLA A A A L++I  E L ER+  LG+ L+  L   +
Sbjct: 279 VGNANIMDAPAPGGLGGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAK 338

Query: 270 QQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG------ILAKPTHDTIVRL 323
           +  P     VRG G   A EF+       +  I  K+++R       +L    +  ++R 
Sbjct: 339 ESVPAIA-AVRGLGSMIAAEFNDPQTGEPSAAIAQKIQQRALAQGLLLLTCGAYGNVIRF 397

Query: 324 TPPLSISSNELQEGSKALHDVLE 346
             PL+I   +     K L D L 
Sbjct: 398 LYPLTIPDAQFDAAMKILQDALS 420

Length = 421

>gnl|CDD|179803 PRK04260, PRK04260, acetylornithine aminotransferase; Provisional

 Score =  176 bits (447), Expect = 9e-52
 Identities = 105/344 (30%), Positives = 174/344 (50%), Gaps = 19/344 (5%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +ALQ+QA  +  S   + N      A++L     Y +    N+GAE  E A+K+ARK   
Sbjct: 51  QALQKQAGLIWHSPNLYLNSLQEEVAQKLIGDKDY-LAFFCNSGAEANEAAIKIARK--- 106

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
                +  +  I++    FHGRT  ++S +  ++   GFG  +P      F D+ +++ +
Sbjct: 107 -----ATGKQEIITFQNSFHGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKAL 161

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                   A  + E +QGE+GV+     ++KA+ D C +  IL+I DE+Q+G+ R+G++ 
Sbjct: 162 ---VNKNTAAVMLELVQGESGVLPADKDFVKALADYCQETGILLIVDEVQTGMGRTGKLY 218

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A +   + PD+  L K L  GV PV A+LA   +      G HGSTFGGN L+ A A A+
Sbjct: 219 AFEHYGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASAT 277

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           LD++      E++   G  L++ L K  Q     V  VRG G    +E   TA       
Sbjct: 278 LDIMLTAGFLEQALENGNYLQEQLQKALQDKET-VTTVRGLGYMIGIE--TTADLS---Q 331

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
           +    +++G++       ++RL PPL+++  E+++G   L +V 
Sbjct: 332 LVEAARDKGLIVLTAGTNVIRLLPPLTLTKEEIEQGIAILSEVF 375

Length = 375

>gnl|CDD|235656 PRK05964, PRK05964, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  176 bits (450), Expect = 2e-51
 Identities = 100/324 (30%), Positives = 155/324 (47%), Gaps = 35/324 (10%)

Query: 45  GAEGVETALKLA----RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD----NEA 96
           G+  VE ALK+A    R  G   +         +S  G +HG T+  +S+  D    +  
Sbjct: 111 GSVAVEVALKMALQYWRNRGEPGRSR------FLSLRGGYHGDTIGTMSV-GDRGGMHAL 163

Query: 97  IRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPD 148
              + PLL   +   F         + ALE + ++   +IA F+ EP +QG  G++    
Sbjct: 164 ---YTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDP 220

Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
            YL  +R +C ++ +L+I DEI +G  R+G + A +   V PD++ L K L GG +P++A
Sbjct: 221 RYLAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAA 280

Query: 209 VLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
            L   E+       +      H  ++  NPLA A A ASLD+  DE + ER A L   L 
Sbjct: 281 TLCTAEIFEAFYSDDRAKAFMHSPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLA 340

Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVR 322
           + L    +  P  V +VR  G   AVE D+  L      +     ERG+L +P  +TI  
Sbjct: 341 EGLEPF-RDLPG-VADVRVLGAIGAVELDRPVLERDGPALRAFALERGVLLRPLGNTIY- 397

Query: 323 LTPPLSISSNELQEGSKALHDVLE 346
           L PP  I++ EL   + A+ +V +
Sbjct: 398 LMPPYIITAEELDRITDAIVEVAD 421

Length = 423

>gnl|CDD|181078 PRK07678, PRK07678, aminotransferase; Validated

 Score =  177 bits (451), Expect = 2e-51
 Identities = 113/362 (31%), Positives = 177/362 (48%), Gaps = 50/362 (13%)

Query: 27  AERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 85
           AE+L    G + ++   N+G+E  ETA K+AR+  Y  +K        +S    +HG ++
Sbjct: 95  AEKLNEWLGGEYVIFFSNSGSEANETAFKIARQ--YHAQKGEPHRYKFISRYRAYHGNSM 152

Query: 86  AAISMSCDNEAIRG--FGPLLPGHLKV---------DFG--DITALE-------KIFKES 125
            A  ++   +A R   + PL PG L V              DI  LE        +  E 
Sbjct: 153 GA--LAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWEL 210

Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
            + IA  + EPI    GV++PP  Y+KAV+++C K+  L+I+DE+  G  R+G+      
Sbjct: 211 SETIAAVIMEPIITGGGVLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMN 270

Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAI 239
             V+PD++ + K +    +P+SA    KE+    +         H +TFGGNP A A+A+
Sbjct: 271 YGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGKGEYEHFRHVNTFGGNPAACALAL 330

Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DK-TALP 296
            +L+++ +E L ERSA LGE L + L +   + P  V ++RG+GL   +E   DK T  P
Sbjct: 331 KNLEIMENENLIERSAQLGELLLEQLKEELGEHP-LVGDIRGKGLLVGIELVNDKETKEP 389

Query: 297 VSAYDI------CLKMKERGILAKPTHDT------IVRLTPPLSISSNELQEGSKALHDV 344
                +      C   KE+G++     DT      ++ L+PPL ISS E+      L   
Sbjct: 390 ADNDKVASVVAAC---KEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTA 446

Query: 345 LE 346
           LE
Sbjct: 447 LE 448

Length = 451

>gnl|CDD|183999 PRK13360, PRK13360, omega amino acid--pyruvate transaminase; Provisional

 Score =  175 bits (446), Expect = 8e-51
 Identities = 114/383 (29%), Positives = 176/383 (45%), Gaps = 52/383 (13%)

Query: 3   ALQEQAEKLTLSS-------RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETAL 53
           A++ QA +L  +        +AF        A R+  +   G + V   N+G+E V+TAL
Sbjct: 70  AVRAQAGELDYAPAFQMGHPKAFE------LANRIAEIAPGGLNHVFFTNSGSESVDTAL 123

Query: 54  KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--HLK-- 109
           K+A  +   + + S     ++     +HG     IS+       + FG LLPG  HL   
Sbjct: 124 KIALAYHRARGEGS--RTRLIGRERGYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHT 181

Query: 110 ----------------VDFGDITALEKI-FKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152
                            +  D   LE++        IA  + EP+ G  GV+IPP GYL+
Sbjct: 182 LDLARNAFSKGQPEHGAELAD--ELERLVTLHDASTIAAVIVEPVAGSTGVLIPPKGYLQ 239

Query: 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD 212
            +R++C K+ IL+I DE+ +G  R G   A+ +  V PD++   K L  G IP+ AV   
Sbjct: 240 RLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVS 299

Query: 213 KEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
            E+      G        HG T+ G+PLA A A+A+LD+   E L  R+A L       L
Sbjct: 300 SEIHDAFMQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDAL 359

Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS--AYDICLKMKERGILAKPTHDTIVRL 323
             + +  P+ V ++R  GL  AVE           AY++ LK  E+G++ + T D +  L
Sbjct: 360 HSL-RDAPH-VIDIRNLGLVGAVELAPRDGKPGKRAYEVFLKCFEKGLMIRYTGDILA-L 416

Query: 324 TPPLSISSNELQEGSKALHDVLE 346
           +PPL I   ++ E    L   L+
Sbjct: 417 SPPLIIEEAQIDELFDILAQALK 439

Length = 442

>gnl|CDD|236437 PRK09264, PRK09264, diaminobutyrate--2-oxoglutarate aminotransferase; Validated

 Score =  173 bits (442), Expect = 2e-50
 Identities = 107/323 (33%), Positives = 168/323 (52%), Gaps = 34/323 (10%)

Query: 44  TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG--FG 101
           TG   VE ALKLARK   V  + +I     V+    FHG TL +++++  N   R     
Sbjct: 111 TGTNAVEAALKLARK---VTGRTNI-----VAFTNGFHGMTLGSLAVT-GNSHKRQGAGV 161

Query: 102 PL-----LP--GHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYL 151
           PL     +P  G+   D   +  LEK+ ++S    D  A  + E +QGE G+ +    +L
Sbjct: 162 PLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGINVASAEWL 221

Query: 152 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLA 211
           + +  LC K++IL+I D+IQ+G  R+G   + +   + PD+V L K++ G  +P++ VL 
Sbjct: 222 QRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGLPMALVLI 281

Query: 212 DKEVMLCI-QPGEHGSTFGGNPLASAVAIASLDVI-RDEKLAERSAHLGEELRQHLFKIQ 269
             E  L + +PGEH  TF GN LA   A A+L+    D+   +     GE +R+ L +I 
Sbjct: 282 KPE--LDVWKPGEHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIA 339

Query: 270 QQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPL 327
            ++P    EVRGRG+   ++F    L   A  I  +  E G++ +     D +V+L PPL
Sbjct: 340 AKYPGLGAEVRGRGMMQGIDFGDGEL---AGKIAAEAFENGLIIETSGPEDEVVKLLPPL 396

Query: 328 SISSNELQEG----SKALHDVLE 346
           +I   EL+EG     +A+ +VL 
Sbjct: 397 TIDEEELEEGLDILEEAVAEVLA 419

Length = 425

>gnl|CDD|236027 PRK07483, PRK07483, hypothetical protein; Provisional

 Score =  174 bits (443), Expect = 2e-50
 Identities = 118/385 (30%), Positives = 182/385 (47%), Gaps = 61/385 (15%)

Query: 2   KALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARK 58
            A+  Q ++L  +  +F+  +     A+RL +    G + V  ++ G+E VE ALKLAR+
Sbjct: 53  AAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQ 112

Query: 59  WGYVKKKFSIDEAIIV---SCCGCFHGRTLAAISMSCDNEAIRG-FGPLL---------- 104
           + +V+         I    S    +HG TL A+++   N   R  F PLL          
Sbjct: 113 Y-FVEIGQPQRRHFIARRQS----YHGNTLGALAIG-GNAWRREPFAPLLIEAHHVSPCY 166

Query: 105 ------PGHLKVDFGDITALE---KIFKESGDQIAGFLFEPIQGE-AGVIIPPDGYLKAV 154
                  G     +G   A E   KI +   D +A F+ E + G  AG + P  GY K +
Sbjct: 167 AYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVGATAGAVPPVPGYFKRI 226

Query: 155 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKE 214
           R++C +Y +L+I DE+  G+ R+G + A + + V PD+V + K LG G  P+ AVLA   
Sbjct: 227 REVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDR 286

Query: 215 VMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ 270
           +   I  G    +HG T+ G+  A A A+A   VI ++ L       GE+LR  L   ++
Sbjct: 287 IYDAIADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARL---RE 343

Query: 271 QFPN--YVKEVRGRGLFNAVE----------FDKTALPVSAYDICLKMKERGILAKPTHD 318
           +     +V ++RGRGLF  VE          FD  AL + A  I  +   RG++  P   
Sbjct: 344 RLGQHPHVGDIRGRGLFVGVELVADRATKAPFDP-ALKLHA-RIKREAMARGLMVYPMGG 401

Query: 319 TI-------VRLTPPLSISSNELQE 336
           TI       V L PP  I++ ++ E
Sbjct: 402 TIDGVRGDHVLLAPPFIITAAQIDE 426

Length = 443

>gnl|CDD|233853 TIGR02407, ectoine_ectB, diaminobutyrate--2-oxoglutarate aminotransferase

 Score =  171 bits (436), Expect = 1e-49
 Identities = 105/327 (32%), Positives = 168/327 (51%), Gaps = 28/327 (8%)

Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
            Y +  P  TG   VE+ALKLARK   V  + ++     VS    FHG TL ++S++  N
Sbjct: 98  DYKVQFPGPTGTNAVESALKLARK---VTGRSNV-----VSFTNAFHGMTLGSLSVT-GN 148

Query: 95  EAIR--GFGPL-----LP--GHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAG 142
              R     PL     +P  G+L  D   I   EK+ ++S    D  A  + E +QGE G
Sbjct: 149 RFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGG 208

Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
           + +  D +L+ +  LC +++IL+I D+IQ+G  R+G   + +   + PD+V L K++ G 
Sbjct: 209 INVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGY 268

Query: 203 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-RDEKLAERSAHLGEEL 261
            +P++  L   E +   +PGEH  TF GN LA   A A+L+    D+   +      E +
Sbjct: 269 GLPLALTLIKPE-LDVWKPGEHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEII 327

Query: 262 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--HDT 319
           ++ L +I  ++P  +K+VRGRGL   +E     L   A  I     E G++ + +  +D 
Sbjct: 328 QERLDRIVAEYPELIKQVRGRGLMQGIECGDGDL---AGKIAKAAFENGLIIETSGPNDE 384

Query: 320 IVRLTPPLSISSNELQEGSKALHDVLE 346
           +++L PPL+I    LQ+G   L   +E
Sbjct: 385 VIKLLPPLTIDEETLQQGLDILEQAVE 411

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore (SP|Q9Z3R2) or 1,3-diaminopropane (SP|P44951) biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance [Cellular processes, Adaptations to atypical conditions]. Length = 412

>gnl|CDD|235892 PRK06938, PRK06938, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  170 bits (434), Expect = 6e-49
 Identities = 106/336 (31%), Positives = 173/336 (51%), Gaps = 44/336 (13%)

Query: 44  TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL 103
           TG + VE ALKL +         +   + ++S  G +HG +  A+S+  +    +  G L
Sbjct: 135 TGTDAVEAALKLVKT--------ATGRSTVLSFQGGYHGMSQGALSLMGNLGPKKPLGAL 186

Query: 104 LPG--------HLKVDFG---------DITALEKIFK--ESGDQI-AGFLFEPIQGEAGV 143
           LPG          +  FG         ++  LE +    ESG  + A  + E +QGE GV
Sbjct: 187 LPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVILEVVQGEGGV 246

Query: 144 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGV 203
           I  P  +L+ +R +  +  I +I DEIQSG  R+G+M A +   + PD+V+L KA+GG  
Sbjct: 247 IPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGS- 305

Query: 204 IPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ 263
           +P++ V+  + +    QPG H  TF GN +A A   A+L  I++ +LAE +A +GE LR+
Sbjct: 306 LPLAVVVYREWLDTW-QPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLRE 364

Query: 264 HLFKIQQQFPNYVKEVRGRGLFNAVEF-DKTALPVS----------AYDICLKMKERGIL 312
           HL ++Q+ +P  + +VRGRGL   VE  D    P +          A  I  +   RG++
Sbjct: 365 HLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQGEPDALGHPPANGELASLIQRECLRRGLI 423

Query: 313 AK--PTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
            +    H ++VR  PPL I++ ++ E ++   + + 
Sbjct: 424 LELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVA 459

Length = 464

>gnl|CDD|223080 COG0001, HemL, Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

 Score =  169 bits (430), Expect = 1e-48
 Identities = 87/282 (30%), Positives = 135/282 (47%), Gaps = 40/282 (14%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFP-----VFAERLTSMFG-YDMVLPMNTGAEGVETALKL 55
           +A+QEQ E+             P       AE L       + V  +N+G E   +A++L
Sbjct: 76  EAVQEQLERGLSFGA-------PTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRL 128

Query: 56  ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH-------- 107
           AR   Y  +        I+   GC+HG + + +  +    A  G  P  PG         
Sbjct: 129 AR--AYTGRD------KIIKFEGCYHGHSDSLLVKAGSGAATLG-SPSSPGVPADVAKHT 179

Query: 108 LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA 167
           L + + D+ ALE+ F+E GD IA  + EP+ G  GV+ P  G+L+ +R+L  ++  L+I 
Sbjct: 180 LVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEGLRELTEEHGALLIF 239

Query: 168 DEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-- 223
           DE+ +G  +A  G   A  +  V PD+  LGK +GGG+ P+ A     E+M  + P    
Sbjct: 240 DEVITGFRVALGG---AQGYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPV 295

Query: 224 -HGSTFGGNPLASAVAIASLDVI-RDEKLAERSAHLGEELRQ 263
               T  GNPLA A  +A+L+ +  +E + ER   LGE L +
Sbjct: 296 YQAGTLSGNPLAMAAGLATLEELMTEEGVYERLDALGERLAE 337

Length = 432

>gnl|CDD|181707 PRK09221, PRK09221, beta alanine--pyruvate transaminase; Provisional

 Score =  169 bits (430), Expect = 2e-48
 Identities = 114/355 (32%), Positives = 172/355 (48%), Gaps = 45/355 (12%)

Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG---CF 80
            AERL  +   G D V   N+G+E V+TALK+A  +   + + +    I     G    +
Sbjct: 97  LAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYHRARGQGTRTRLI-----GRERGY 151

Query: 81  HGRTLAAISMSCDNEAIRGFGPLLPG--HLK------------------VDFGDITALEK 120
           HG     IS+       + FG LLPG  HL                    +  D   LE+
Sbjct: 152 HGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELAD--DLER 209

Query: 121 IFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 179
           +        IA  + EP+ G AGV++PP GYL+ +R++C K+ IL+I DE+ +G  R G 
Sbjct: 210 LVALHDASTIAAVIVEPMAGSAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGA 269

Query: 180 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM-LCIQPGE------HGSTFGGNP 232
             A++   V PD++   K L  G IP+ AV+A  E+    +Q  E      HG T+  +P
Sbjct: 270 AFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAFMQGPEYAIEFFHGYTYSAHP 329

Query: 233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD- 291
           +A A  +A+LD+ R+E L ER+A L       +  ++   P+ V ++R  GL   +E   
Sbjct: 330 VACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLKGL-PH-VIDIRNIGLVAGIELAP 387

Query: 292 -KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
              A     Y+  +K  E+G+L + T DTI  L+PPL I   ++ E   AL D L
Sbjct: 388 RPGAPGARGYEAFMKCFEKGLLVRYTGDTIA-LSPPLIIEKAQIDELVDALGDAL 441

Length = 445

>gnl|CDD|129792 TIGR00709, dat, 2,4-diaminobutyrate 4-transaminases

 Score =  169 bits (429), Expect = 2e-48
 Identities = 104/359 (28%), Positives = 167/359 (46%), Gaps = 49/359 (13%)

Query: 26  FAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80
           F E L ++       Y +  P  +GA+ VE A+KLA+ +             ++S  G F
Sbjct: 87  FIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTY--------TGRTNVISFSGGF 138

Query: 81  HGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDFG-----DITALEKIFK---- 123
           HG T+ A++++ +  A    G L+PG          +  FG        A  + F+    
Sbjct: 139 HGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIE 198

Query: 124 --ESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ESG D+ A  + E IQGE GV+  P  +L+ +R++  K++I +I DE+Q+G  RSG M
Sbjct: 199 DVESGVDKPAAVILEAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTM 258

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A +   + PD V++ KA+GGG +P+ AVL         QP  H  TF GN LA      
Sbjct: 259 FAFEHAGIEPDFVVMSKAVGGG-LPL-AVLLIAPEFDAWQPAGHTGTFRGNQLAMVTGTE 316

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPV 297
           +L+  +D+ LA+ +   GE +   L  + ++ P  +  VRGRGL   +      ++    
Sbjct: 317 ALNYWKDDNLAQNAQERGERITSFLDDMIKEHPC-IGNVRGRGLMQGIMIVDERQSKDAT 375

Query: 298 SAYDICLKMK--------ERGILAKP--THDTIVRLTPPLSISSNELQEGSKALHDVLE 346
            AY    ++         E G+L +       + RL  P++I   E +EG       +E
Sbjct: 376 GAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVE 434

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase [Central intermediary metabolism, Other]. Length = 442

>gnl|CDD|236149 PRK08088, PRK08088, 4-aminobutyrate aminotransferase; Validated

 Score =  166 bits (423), Expect = 1e-47
 Identities = 98/315 (31%), Positives = 167/315 (53%), Gaps = 32/315 (10%)

Query: 44  TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRGFGP 102
           TG+E VE A+K+AR     K+      + +++  G +HGRT   ++++   N    G G 
Sbjct: 110 TGSEAVENAVKIAR--AATKR------SGVIAFTGAYHGRTHYTLALTGKVNPYSAGMG- 160

Query: 103 LLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDG 149
           L+PGH+           V   D I ++E+IFK     + IA  + EP+QGE G       
Sbjct: 161 LMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFYAASPA 220

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           +++ +R LC ++ I++IADE+Q+G  R+G + A +   V  D+    K++ GG  P++ V
Sbjct: 221 FMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGG-FPLAGV 279

Query: 210 LADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 269
               EVM  I PG  G T+ GNP+A A A+A L V   E L +++  LGE+L+  L  I 
Sbjct: 280 TGRAEVMDAIAPGGLGGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIA 339

Query: 270 QQFPNYVKEVRGRGLFNAVEF---DKTALPVSAY--DICLKMKERG--ILAKPTHDTIVR 322
           ++ P  + +VRG G   A+E       + P +     I  + +++G  +L+   +  ++R
Sbjct: 340 EKHPE-IGDVRGLGAMIAIELFEDGDHSKPNAKLTAQIVARARDKGLILLSCGPYYNVLR 398

Query: 323 LTPPLSISSNELQEG 337
           +  PL+I   ++++G
Sbjct: 399 ILVPLTIEDAQIRQG 413

Length = 425

>gnl|CDD|235889 PRK06931, PRK06931, diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

 Score =  166 bits (423), Expect = 2e-47
 Identities = 112/356 (31%), Positives = 178/356 (50%), Gaps = 63/356 (17%)

Query: 26  FAERLTSMF---GYDMVLPMN--TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF 80
           F+E L S+    G +  L     +GA+ VE A+KLA+ +           + ++S  G +
Sbjct: 106 FSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTY--------TGRSNVISFSGGY 157

Query: 81  HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------------GD--ITALEKIFK- 123
           HG T  A++++ +         L+PG   V F              G+  + AL   F+ 
Sbjct: 158 HGMTHGALAVTGNLSPKNAVNGLMPG---VQFMPYPHEYRCPLGIGGEAGVKALTYYFEN 214

Query: 124 -----ESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS 177
                ESG  + A  + E IQGE GV   P  +L+ +R++  K+ IL+I DE+Q+G AR+
Sbjct: 215 FIEDVESGVRKPAAVILEAIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFART 274

Query: 178 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAV 237
           G+M A +   + PD++++ KA+GGG +P+ AVL  K+     QPG H  TF GN LA A 
Sbjct: 275 GKMFAFEHAGIEPDIIVMSKAVGGG-LPL-AVLGIKKEFDAWQPGGHTGTFRGNQLAMAT 332

Query: 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------- 290
            + +L ++++E LA+ +A  GE L+  L ++Q+++P  +  VRGRGL   +E        
Sbjct: 333 GLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYP-CIGNVRGRGLMIGIEIVDERQPA 391

Query: 291 DKTA-------LPVSAYDICLKMK---ERGILAKPTHDTIVRLTPPLSISSNELQE 336
           D          L  +    C +     ERG      +  +VRL PPL I+  E +E
Sbjct: 392 DAMGSYPADGELAAAIQKACFENGLLLERG----GRNGNVVRLLPPLLITQAECEE 443

Length = 459

>gnl|CDD|168145 PRK05639, PRK05639, 4-aminobutyrate aminotransferase; Provisional

 Score =  162 bits (411), Expect = 9e-46
 Identities = 111/383 (28%), Positives = 204/383 (53%), Gaps = 50/383 (13%)

Query: 1   MKALQEQAEKLTLSSRAF-YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLAR 57
           +KA+QEQ   +  S   + ++++    AE+L  +   +   VL   +G++ V+ A+K+++
Sbjct: 75  VKAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSK 134

Query: 58  KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHLKVDFGD-- 114
                   FS     I++  G +HG+TL A S+ +  +   RGF PL+P  + + + +  
Sbjct: 135 --------FSTRRPWILAFIGAYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPY 186

Query: 115 -----ITALEK---------------IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLK 152
                I   E+               +F      D++A    EPIQG+AG+++PP+ + K
Sbjct: 187 RNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALFAEPIQGDAGIVVPPENFFK 246

Query: 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD 212
            ++ L  ++ IL++ DE+Q+G+ R+G+  AS+W EV+PD++I GK +  G + +S V+  
Sbjct: 247 ELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASG-MGLSGVIGR 305

Query: 213 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 272
           KE+M  +  G    T   NP+ SA A A+L++I +E L + +  +GE +++ L ++++ F
Sbjct: 306 KELMD-LTSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESF 364

Query: 273 PNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKMKERGILAKPTH---DTIVRLTPP 326
              + +VRG+GL   VE  K      P     IC +  E G++  P++     ++R+TPP
Sbjct: 365 -EVIGDVRGKGLMIGVEIVKENGKPDPELTGKICWRAFELGLIL-PSYGMFGNVIRITPP 422

Query: 327 LSISSNELQEG----SKALHDVL 345
           L I+    ++G     +A+ D L
Sbjct: 423 LVITKEIAEKGLEIMERAIKDAL 445

Length = 457

>gnl|CDD|180994 PRK07480, PRK07480, putative aminotransferase; Validated

 Score =  161 bits (410), Expect = 2e-45
 Identities = 115/370 (31%), Positives = 178/370 (48%), Gaps = 65/370 (17%)

Query: 17  AFYNDKF-----PV--FAERLTSMFGYDM--VLPMNTGAEGVETALKLARK-W---GYVK 63
            +YN  F     P    A +L  +       V   N+G+E  +T L++ R  W   G  +
Sbjct: 83  PYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYWALKGKPQ 142

Query: 64  KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL-LPGHLKVD----------- 111
           KK      +I+S    +HG T+A  S+    + +   G L +PG + +D           
Sbjct: 143 KK------VIISRKNGYHGSTVAGASL-GGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDM 195

Query: 112 ----FGDITA--LEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164
               FG   A  LE    E G D +A F+ EPIQG  GVIIPP  Y   ++ +C KY+IL
Sbjct: 196 TPEEFGLAAARQLEAKILELGADNVAAFIGEPIQGAGGVIIPPATYWPEIQRICRKYDIL 255

Query: 165 MIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPG 222
           ++ADE+  G  R+G    S    ++PD++ + K L  G IP+ AV     V  +L  + G
Sbjct: 256 LVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVLIEEGG 315

Query: 223 E--HGSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLFKIQQQFPNY--VK 277
           E  HG T+ G+P+A+AVA+A+L ++RDE + ER     G  L++ L    ++  ++  V 
Sbjct: 316 EFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRL----RELADHPLVG 371

Query: 278 EVRGRGLFNAVEFDKTALPVSAY-----------DICLKMKERGILAKPTHDTIVRLTPP 326
           EVRG GL  A+E  K       +           D C      G++ +   D ++ ++PP
Sbjct: 372 EVRGVGLVGAIELVKDKATRERFEAGGGVGTICRDHCFA---NGLIMRAVGDRMI-ISPP 427

Query: 327 LSISSNELQE 336
           L I+  E+ E
Sbjct: 428 LVITHAEIDE 437

Length = 456

>gnl|CDD|180401 PRK06105, PRK06105, aminotransferase; Provisional

 Score =  157 bits (399), Expect = 8e-44
 Identities = 116/369 (31%), Positives = 175/369 (47%), Gaps = 65/369 (17%)

Query: 27  AERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYV-------KKKFSIDEAIIVSCC 77
           AE+L +M    M  V   N+G+E  +T +KL   W Y        KKK       I+S  
Sbjct: 98  AEKLVAMAPVPMSKVFFTNSGSEANDTVVKLV--WYYNNALGRPEKKK-------IISRQ 148

Query: 78  GCFHGRTLAAISMSCDNEAIRGFG-PL---------------LPGHLKVDFGDITA--LE 119
             +HG T+A+ S++      R F  PL               LPG  +  F    A  LE
Sbjct: 149 RGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELE 208

Query: 120 K-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
             I  E  D IA F+ EP+ G  GVI+PP  Y + ++ +  KY+IL++ADE+  G  R+G
Sbjct: 209 ALILAEGPDTIAAFIGEPVMGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTG 268

Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGE-----HGSTFGGN 231
            M   +   ++PD++++ K L     P+SAVL +++V   I  + G+     HG T  G+
Sbjct: 269 NMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYDPIADESGKIGTFGHGFTASGH 328

Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF- 290
           P+A+AVA+ +L +I +  L   +A  G  L+  L  +    P  V EVRG GL  AVE  
Sbjct: 329 PVAAAVALENLAIIEERDLVGNAAERGARLQARLRALADH-P-LVGEVRGVGLIAAVELV 386

Query: 291 -DKT---------ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG--- 337
            DK           +   A        E G++++   DT+    PPL I++ ++ E    
Sbjct: 387 ADKATKTPFEPPGKVGARANAAAH---EHGVISRAMGDTLA-FCPPLIITAAQVDEMVDR 442

Query: 338 -SKALHDVL 345
             +AL DV 
Sbjct: 443 FGRALDDVA 451

Length = 460

>gnl|CDD|180426 PRK06148, PRK06148, hypothetical protein; Provisional

 Score =  158 bits (402), Expect = 1e-42
 Identities = 112/361 (31%), Positives = 170/361 (47%), Gaps = 44/361 (12%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKW 59
            A   QA +L  ++R + +D    +AERLT+    G  +   +N+G+E    AL+LAR  
Sbjct: 645 AAAARQAARLNTNTR-YLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAH 703

Query: 60  GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV--------- 110
              +    +D A        +HG T   I +S      +G G   P H++V         
Sbjct: 704 TGQRDAIVLDHA--------YHGTTTELIDLSPYKFNRKG-GKGRPDHVEVAEVPDSYRG 754

Query: 111 DFG-DITALEKIFKES-----------GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC 158
                     + F ES           G   A F+ E I   AG I  P+GYL+ V  + 
Sbjct: 755 PERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIPSVAGQIFLPEGYLREVYAMV 814

Query: 159 SKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
                + IADE+Q G  R G    A + + V PD+V +GK +G G  P+ AV+  +E+  
Sbjct: 815 RAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIAD 873

Query: 218 CIQPG-EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV 276
               G E+ +TFGGNP++ A+ +A LD+I DE L   +  +G  L   L ++Q +F   +
Sbjct: 874 SFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFD-II 932

Query: 277 KEVRGRGLFNAVEF---DKTALPVS--AYDICLKMKERGIL--AKPTHDTIVRLTPPLSI 329
            +VRG GLF  +E     KT  P +  A  +    +ERGIL   +  HD ++++ PPL  
Sbjct: 933 GDVRGMGLFLGIELVTDRKTKAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIF 992

Query: 330 S 330
           S
Sbjct: 993 S 993

Length = 1013

>gnl|CDD|235823 PRK06541, PRK06541, hypothetical protein; Provisional

 Score =  151 bits (383), Expect = 1e-41
 Identities = 110/396 (27%), Positives = 168/396 (42%), Gaps = 69/396 (17%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVF----------AERLTSMFGYDM--VLPMNTGAEGV 49
           +A  +QA  L     AF    FP++          AERL ++   D+  V     G+E V
Sbjct: 75  EAAAKQAGTL-----AF----FPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAV 125

Query: 50  ETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 109
           E+A KLA++  Y K      +  ++S    +HG T  A++++        F PL+PG  +
Sbjct: 126 ESAWKLAKQ--YFKLTGKPGKHKVISRAIAYHGTTQGALAITGLPAFKAPFEPLVPGGFR 183

Query: 110 VD----------------FGDITA---LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 150
           V                 FG   A    E I  E  D +A    EP+Q   G   PP GY
Sbjct: 184 VPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQNAGGCFPPPPGY 243

Query: 151 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 210
            + VR++C +Y++L+++DE+     R G M   +     PD++   K +  G  P+ A++
Sbjct: 244 FERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMI 303

Query: 211 ADKEVMLCIQPGE----HGSTFGGNPLASAVAIASLDVIRDEKLAER----SAHLGEELR 262
           A   +      G     HG TFGG+P+++AVA+A+LD+   E L +            L 
Sbjct: 304 ASDRLFEPFLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLE 363

Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEF--DKTALPVSAYDICL---------KMKERGI 311
           + L       P  V +VRG G F  +E   DK        D             + E G+
Sbjct: 364 KLL-----DLP-IVGDVRGDGYFYGIELVKDKATKETFTDDESERLLRGFLSPALFEAGL 417

Query: 312 LAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVL 345
             +     D +V+L PPL     E  E  + L  VL
Sbjct: 418 YCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVL 453

Length = 460

>gnl|CDD|181189 PRK07986, PRK07986, adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

 Score =  150 bits (380), Expect = 2e-41
 Identities = 104/330 (31%), Positives = 163/330 (49%), Gaps = 43/330 (13%)

Query: 43  NTGAEGVETALKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD----- 93
           ++G+  VE A+K+A ++    G  +++F       ++    +HG T  A+S+ CD     
Sbjct: 110 DSGSVAVEVAMKMALQYWQAKGEPRQRF-------LTLRHGYHGDTFGAMSV-CDPDNSM 161

Query: 94  NEAIRGFGPLLPGHLKVD-----FG------DITALEKIFKESGDQIAGFLFEPI-QGEA 141
           +   +G+   LP +L        F       DI    ++      +IA  + EPI QG  
Sbjct: 162 HSLYKGY---LPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAG 218

Query: 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG 201
           G+ I    +LK VR LC +  IL+IADEI +G  R+G++ A +   + PD++ LGKAL G
Sbjct: 219 GMRIYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTG 278

Query: 202 GVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 256
           G + +SA L  +EV   I  GE     HG TF GNPLA AVA ASL ++      ++ A 
Sbjct: 279 GTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAA 338

Query: 257 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT 316
           +  +LR+ L  ++      V +VR  G    VE   T  PV+   +     E+G+  +P 
Sbjct: 339 IEAQLREELAPLRDA--PMVADVRVLGAIGVVE---TTRPVNMAALQRFFVEQGVWIRPF 393

Query: 317 HDTIVRLTPPLSISSNELQEGSKALHDVLE 346
              I  L PP  I   +LQ  + A++  ++
Sbjct: 394 GKLIY-LMPPYIILPEQLQRLTAAVNRAVQ 422

Length = 428

>gnl|CDD|233100 TIGR00713, hemL, glutamate-1-semialdehyde-2,1-aminomutase

 Score =  148 bits (376), Expect = 7e-41
 Identities = 87/278 (31%), Positives = 140/278 (50%), Gaps = 29/278 (10%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWG 60
           +A++E  E+ T  S     +   + A+ + S     +MV  +N+G E   +A++LAR  G
Sbjct: 71  EAVKEALERGT--SYGAPTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLAR--G 126

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGH--------LKVDF 112
           Y  +        I+   GC+HG   A +  +    A  G  P  PG         L + +
Sbjct: 127 YTGRD------KIIKFEGCYHGHHDALLVKAGSGAATLGL-PTSPGVPEDFAKLTLVLPY 179

Query: 113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
            D+ ALE++F+E G++IAG + EP+ G  GV+ P   +L  +R L  +Y  L+I DE+ +
Sbjct: 180 NDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAGLRALTEEYGSLLIFDEVMT 239

Query: 173 G--LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGST 227
           G  +A  G   A ++  V PD+  LGK +GGG +PV A    +E+M  + P G      T
Sbjct: 240 GFRVALGG---AQEYFGVEPDLTTLGKIIGGG-LPVGAFGGRREIMERLAPEGPVYQAGT 295

Query: 228 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
             GNPLA A  +A+L ++ +E +      L + L + L
Sbjct: 296 LSGNPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGL 333

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 423

>gnl|CDD|180441 PRK06173, PRK06173, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  146 bits (369), Expect = 8e-40
 Identities = 98/324 (30%), Positives = 157/324 (48%), Gaps = 32/324 (9%)

Query: 43  NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 102
           ++G+  VE A+K+A +  Y + K  +      +    +HG T  A+S+ CD   + G   
Sbjct: 111 DSGSVAVEVAMKMALQ--YQQAKGEVQRTKFATIRSGYHGDTWHAMSV-CD--PVTGMHG 165

Query: 103 LLPGHL---------KVDFG------DITALEKIFKESGDQIAGFLFEPI-QGEAGVIIP 146
           L    L          + FG       I  L+ + ++ GD+IA  + EP+ QG  G+   
Sbjct: 166 LFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYFY 225

Query: 147 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPV 206
              YL   R+LC +Y +L+I DEI +G  R+G++ A +   V PD++ +GKAL GG + +
Sbjct: 226 SPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTL 285

Query: 207 SAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 261
           SA +  + +   I  GE     HG TF  NPLA A+A  S+ ++ +    +    +  +L
Sbjct: 286 SATITTEAIAQTICSGEAKCFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQL 345

Query: 262 RQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 321
           +Q L     +F   V EVR  G    VE  +   PV+   +  +  E GI  +P    +V
Sbjct: 346 KQEL-APAAEFD-SVAEVRVLGAIGVVEMKE---PVNMATLQPRFVEHGIWVRP-FGKLV 399

Query: 322 RLTPPLSISSNELQEGSKALHDVL 345
            + PP  IS +EL + +  L  VL
Sbjct: 400 YIMPPFIISPDELSQLTSGLLRVL 423

Length = 429

>gnl|CDD|235913 PRK07036, PRK07036, hypothetical protein; Provisional

 Score =  146 bits (370), Expect = 9e-40
 Identities = 106/387 (27%), Positives = 168/387 (43%), Gaps = 53/387 (13%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPV---FAERLTSMFGYDM--VLPMNTGAEGVETALKLAR 57
           A+ +QA +L   +  F +         A +L  +   D+  V     G+  V++AL+   
Sbjct: 75  AIADQARRLPYYT-PFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVH 133

Query: 58  KW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS---CDNEAIRGFGPLL------ 104
            +    G   KK       I++    +HG T    S++    D         L+      
Sbjct: 134 YYFNVRGRPAKKH------IITRGDAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSP 187

Query: 105 -----PGHLKV-DFGDITALE---KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                P  +    F D    E   KI     D IA F+ EPI G  GVI+PP GY   +R
Sbjct: 188 NPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILGSGGVIVPPPGYHARMR 247

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALGGGVIPVSAVLADKE 214
           ++C +Y+IL I+DE+ +G  R G   AS     ++PD++   K L  G  P+ AV+  + 
Sbjct: 248 EICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISER 307

Query: 215 VMLCIQ----PGE---HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 267
           ++  I      G    HG T+ G+P+A A A+ +++++  E L E    +G    + L  
Sbjct: 308 LLDVISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLAS 367

Query: 268 IQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPTHDT 319
           + ++ P  V +VRG  L   VE       K  LP        I    +ERG+L +P    
Sbjct: 368 L-RELP-LVGDVRGDHLMACVECVADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLEHL 425

Query: 320 IVRLTPPLSISSNELQEGSKALHDVLE 346
            V L+PPL I+  ++ E    L   +E
Sbjct: 426 CV-LSPPLIITRAQIDEIVAILRAAIE 451

Length = 466

>gnl|CDD|215405 PLN02760, PLN02760, 4-aminobutyrate:pyruvate transaminase

 Score =  142 bits (360), Expect = 3e-38
 Identities = 118/393 (30%), Positives = 173/393 (44%), Gaps = 80/393 (20%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPV---FAERLTSMF-GYDM--VLPMNTGAEGVETALK 54
           + A  EQ  KL     +F+N         A+ L  MF    M  V   N+G+E  +T +K
Sbjct: 111 VAAATEQLNKLPFY-HSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVK 169

Query: 55  LARKWGYV-------KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF---GPL- 103
           L   W Y        KKKF       ++    +HG TL + S+S      + F    P  
Sbjct: 170 LV--WYYNNALGRPNKKKF-------IARSKSYHGSTLISASLSGLPALHQKFDLPAPFV 220

Query: 104 ------------LPGHLKVDFGDITA--LEK-IFKESGDQIAGFLFEPIQGEAGVIIPPD 148
                       LPG  + +F    A  LE  I KE  + IA F+ EP+ G  GVI PP 
Sbjct: 221 LHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEPVMGAGGVIPPPA 280

Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
            Y + ++ +  KY+IL IADE+     R G M   D   ++PD+V L KAL    +P+ A
Sbjct: 281 TYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGA 340

Query: 209 VLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEEL 261
           VL   E+   I           HG T+ G+P++ AVA+ +L + ++  + E         
Sbjct: 341 VLVSPEISDVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPE--------- 391

Query: 262 RQHLFKIQQQFPNYVK---------EVRGRGLFNAVEFDKTALP---------VSAYDIC 303
             H+ KI  +F + +K         E+RG GL    EF     P         V AY   
Sbjct: 392 --HVNKIAPRFQDGIKAFSGSPIIGEIRGTGLILGTEFVDNKSPNDPFPAEWGVGAY-FG 448

Query: 304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
            + K+RG+L +   D I+ ++PPL I+  E+ E
Sbjct: 449 AECKKRGMLVRVAGDNIM-MSPPLIITPEEVDE 480

Length = 504

>gnl|CDD|234607 PRK00062, PRK00062, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  138 bits (350), Expect = 5e-37
 Identities = 86/270 (31%), Positives = 134/270 (49%), Gaps = 61/270 (22%)

Query: 27  AERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCFH 81
           AE +  +    +MV  +N+G E   +A++LAR  GY  +    KF           GC+H
Sbjct: 96  AELVIELVPSIEMVRMVNSGTEATMSAIRLAR--GYTGRDKIIKFE----------GCYH 143

Query: 82  GR---TLAAISMSCDNEAIRG---FG-PLLPG-------H-LKVDFGDITALEKIFKESG 126
           G     L         +A  G    G P  PG       H L   + D+ A+E++F+E G
Sbjct: 144 GHADSLLV--------KAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYG 195

Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASD 184
           D+IA  + EP+ G  GV+ P  G+L+ +R+LC ++  L+I DE+ +G  +A  G   A  
Sbjct: 196 DEIAAVIVEPVAGNMGVVPPKPGFLEGLRELCDEHGALLIFDEVMTGFRVALGG---AQG 252

Query: 185 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-------GEHGSTFGGNPLASAV 237
           +  V PD+  LGK +GGG +PV A    +E+M  + P       G    T  GNPLA A 
Sbjct: 253 YYGVTPDLTTLGKIIGGG-LPVGAFGGRREIMEQLAPLGPVYQAG----TLSGNPLAMAA 307

Query: 238 AIASLDVIRD----EKLAERSAHLGEELRQ 263
            +A+L ++++    E+L   +  L E L++
Sbjct: 308 GLATLKLLKEPGFYEELEALTKRLAEGLKE 337

Length = 426

>gnl|CDD|236224 PRK08297, PRK08297, L-lysine aminotransferase; Provisional

 Score =  137 bits (347), Expect = 2e-36
 Identities = 105/345 (30%), Positives = 156/345 (45%), Gaps = 66/345 (19%)

Query: 45  GAEGVETALKLARKWGYVKKKFS--IDEAI---IVSCCGCFHGRTLAAISMS-------- 91
           GA  VE ALK+A  W   +K  +  ID A+   ++   G FHGR+   +S++        
Sbjct: 119 GALAVENALKVAFDWK-SRKNEARGIDPALGTKVLHLRGAFHGRSGYTLSLTNTDPRKTA 177

Query: 92  ---------CDNEAIRGFGPLLPGHLKVDFGDITALEK--------IFKESGDQIAGFLF 134
                     DN  +R   P        D  ++ ALE          F+     IA F+ 
Sbjct: 178 RFPKFDWPRIDNPKLRFPLP------GEDLEEVEALEAEALAQARAAFERHPHDIACFIA 231

Query: 135 EPIQGEAGVIIPPDG-----YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR 189
           EPIQGE G     D      +  A+R+LC +++ L+I DE+Q+G+  +G   A     VR
Sbjct: 232 EPIQGEGG-----DNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVR 286

Query: 190 PDMVILGKALGGGVIPVSAVLADKEVMLC-----IQPGEHGSTFGGNPLASAV-AIASLD 243
           PD+V  GK        V  ++A + V               ST+GGN L   V A   L+
Sbjct: 287 PDIVAFGKKT-----QVCGIMAGRRVDEVEDNVFAVSSRINSTWGGN-LVDMVRARRILE 340

Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY--D 301
           VI ++ L E +A  GE L   L ++  +FP  V  VRGRGL  A  FD   LP +A   +
Sbjct: 341 VIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCA--FD---LPTTADRDE 395

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +  ++ E G+L  P  +  +R  P L++++ E+     AL   L 
Sbjct: 396 VIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP 440

Length = 443

>gnl|CDD|132295 TIGR03251, LAT_fam, L-lysine 6-transaminase

 Score =  134 bits (340), Expect = 8e-36
 Identities = 92/332 (27%), Positives = 148/332 (44%), Gaps = 44/332 (13%)

Query: 45  GAEGVETALKLARKWGYVKKKFS--IDEAI---IVSCCGCFHGRTLAAISMS-------- 91
           GA  VE ALK A  W   +   +  I  A+   ++     FHGR+   +S++        
Sbjct: 112 GALAVENALKTAFDWK-SRHNQARGIPAALGTQVLHLRQAFHGRSGYTLSLTNTDPRKTA 170

Query: 92  ---------CDNEAIRGFGPLLPGHLKVDFGDITAL---EKIFKESGDQIAGFLFEPIQG 139
                     DN  +  F    P   +V   +  AL      F E    IA F+ EPIQG
Sbjct: 171 RFPKFDWPRIDNPKLT-FPLDAPNLDQVIALEEEALRQARAAFAERPHDIACFIAEPIQG 229

Query: 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKAL 199
           E G       +L+A+R LC +++ L+I DE+Q+G+  +G   A     V+PD+V  GK  
Sbjct: 230 EGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKK- 288

Query: 200 GGGVIPVSAVLADKEV-----MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERS 254
                 V  ++A + V      +   P    ST+GGN +    A   L++I +E+L + +
Sbjct: 289 ----TQVCGIMAGRRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNA 344

Query: 255 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY--DICLKMKERGIL 312
              G  L   L ++  +FP+ V   RGRGL  A +     LP +A   ++  ++   G+L
Sbjct: 345 RVQGAHLLARLHELAAEFPHLVSNPRGRGLMCAFD-----LPSTADRDEVIRQLYREGVL 399

Query: 313 AKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344
                +  +R  PPL+++  E+     A+  V
Sbjct: 400 LLGCGERSIRFRPPLTVTREEIDAAIDAIRRV 431

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites. Length = 431

>gnl|CDD|236026 PRK07482, PRK07482, hypothetical protein; Provisional

 Score =  134 bits (339), Expect = 2e-35
 Identities = 82/247 (33%), Positives = 126/247 (51%), Gaps = 20/247 (8%)

Query: 118 LEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176
           LE+ I  E  D IA F+ EP+ G  G++ PP GY  A++ +  KY+IL+IADE+ +G  R
Sbjct: 209 LEELILAEGPDTIAAFIAEPVLGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGR 268

Query: 177 SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFG 229
            G M  SD   + PD++ + K L     P+S  +  ++V   ++ G        HG T+ 
Sbjct: 269 LGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWDVLEQGSDEHGAIGHGWTYS 328

Query: 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289
           G+P+ +A A+A+LD++  E L   +A +G   R  L       P  V EVRG G+  AVE
Sbjct: 329 GHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDHPL-VGEVRGVGMLAAVE 387

Query: 290 F-----DKT----ALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSK 339
           F     D+T    AL +    +     ERG++A+   H  I+   PPL ++  E  E   
Sbjct: 388 FVADRDDRTPFDPALKIGP-QVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVA 446

Query: 340 ALHDVLE 346
              D ++
Sbjct: 447 IAKDAVD 453

Length = 461

>gnl|CDD|171472 PRK12403, PRK12403, putative aminotransferase; Provisional

 Score =  133 bits (336), Expect = 5e-35
 Identities = 97/345 (28%), Positives = 165/345 (47%), Gaps = 40/345 (11%)

Query: 26  FAERLTSMFG--YDMVLPMNTGAEGVETALKLARK-WGYVKKKFSIDEAIIVSCCGCFHG 82
            +E L S+    Y   +  N+G+E  E  ++  R+ W  + K     + I++     +HG
Sbjct: 103 LSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYWQVLGKP---QKKIMIGRWNGYHG 159

Query: 83  RTLAAISMSCDNEAIRGFGPLLPGHLKVD---------------FGDITAL---EKIFKE 124
            TLAA ++    + +   G L+P    +D               FG   AL   EKI + 
Sbjct: 160 STLAATALG-GMKFMHEMGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILEL 218

Query: 125 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 184
             + +AGF+ EP QG  G+I PP+ Y   ++ +C +Y++L+ ADE+  G  R+G   A +
Sbjct: 219 GAENVAGFVAEPFQGAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHE 278

Query: 185 WEEVRPDMVILGKALGGGVIPVSAVLADKEV--MLCIQPG--EHGSTFGGNPLASAVAIA 240
                PD + + K L  G +P+  ++  K +   L  Q G   HG T+ G+P+A+AVAIA
Sbjct: 279 HFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEALVEQGGVFAHGLTYSGHPVAAAVAIA 338

Query: 241 SLDVIRDEKLAERSAH-LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299
           +L  +RDE +  R     G  L++ L ++    P  V EV+G GL  A++F +       
Sbjct: 339 NLKALRDEGVVTRVKDDTGPYLQRCLREVFGDHP-LVGEVQGAGLVAALQFAEDKATRKR 397

Query: 300 Y----DICLKMK----ERGILAKPTHDTIVRLTPPLSISSNELQE 336
           +    D+  + +    E G++ + T   ++ + P L     E+ E
Sbjct: 398 FANENDLAWRCRTIGFEEGVIIRSTLGRMI-MAPALVAGRAEIDE 441

Length = 460

>gnl|CDD|180330 PRK05965, PRK05965, hypothetical protein; Provisional

 Score =  129 bits (326), Expect = 1e-33
 Identities = 80/253 (31%), Positives = 121/253 (47%), Gaps = 24/253 (9%)

Query: 115 ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173
           + AL     E G D +A F  EPIQG  GVI+PP G+LKA+R+ C +  IL +ADE+ +G
Sbjct: 201 VAALRAKVAELGADNVAAFFCEPIQGSGGVIVPPKGWLKAMREACRELGILFVADEVITG 260

Query: 174 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGS 226
             R+G + A + E V PD++ + K L  G +P+ AVL    V   I  G        HG 
Sbjct: 261 FGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQGIADGAGAAAPVGHGY 320

Query: 227 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN 286
           T+  +P+++AV +  L +  +  L       G      L  ++   P  V +VRGRGL  
Sbjct: 321 TYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALRAH-P-LVGDVRGRGLLG 378

Query: 287 AVEF-----DKTALPVSAYDICLKMKER----GILAKPTHDTIVRLTPPLSISSNE---- 333
           A+E       KT    +  D   ++ +R    G++ +   D ++   P L  +  E    
Sbjct: 379 ALELVADKATKTPFDAAL-DPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLI 437

Query: 334 LQEGSKALHDVLE 346
            +   K L DVL 
Sbjct: 438 FERTRKTLDDVLA 450

Length = 459

>gnl|CDD|235716 PRK06149, PRK06149, hypothetical protein; Provisional

 Score =  128 bits (324), Expect = 2e-32
 Identities = 110/358 (30%), Positives = 175/358 (48%), Gaps = 49/358 (13%)

Query: 7   QAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKK 64
           Q   L  +SR F+      F+ERL ++   G D V  +N+G+E  + A++LA  W    +
Sbjct: 611 QWSLLNTNSR-FHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLA--WAASGR 667

Query: 65  KFSIDEAIIVSCCGCFHGRTLA--AISMS-CDN--------------EAIRGF-GPLLPG 106
           +       +VS    +HG T+A  A+S S  DN              E+   + G     
Sbjct: 668 R------DVVSVLEAYHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGA 721

Query: 107 HLKVDF-GDITA-LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL 164
               D+  D+ A LE++   SG  +AGF+ EP+ G AG I  P GYL+ V         +
Sbjct: 722 DSAADYVRDVVAQLEEL-DASGRGLAGFICEPVYGNAGGIALPPGYLQQVYAAVRARGGV 780

Query: 165 MIADEIQSGLARSGRMLASDW--EE--VRPDMVILGKALGGGVIPVSAVLADKEVMLCI- 219
            IADE+Q G  R G      W  E+  V PD++ + K +G G  P+ AV+  +E+   + 
Sbjct: 781 CIADEVQVGYGRLGHYF---WGFEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEALE 836

Query: 220 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 279
             G   S+ GG+P++  + +A LDV+R+EKL E +  +G+ L+  L  +  + P  +  V
Sbjct: 837 AEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHP-LIGAV 895

Query: 280 RGRGLFNAVEF--DKTAL---PVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSIS 330
            G GL+  VE   D+  L         IC ++ E G++ +PT  H  I+++ PPL + 
Sbjct: 896 HGMGLYLGVELVRDRQTLEPATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLD 953

Length = 972

>gnl|CDD|180800 PRK07030, PRK07030, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  123 bits (311), Expect = 2e-31
 Identities = 107/377 (28%), Positives = 170/377 (45%), Gaps = 59/377 (15%)

Query: 3   ALQEQAEKLTLSSRAFYNDKFPV--FAERLTSMF--GYDMVLPMNTGAEGVETALKLA-R 57
            +++Q ++L     A ++ + PV   +ERL  +   G       + G+  +E ALK++  
Sbjct: 71  RIKDQVDQLEHVILAGFSHE-PVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFH 129

Query: 58  KWGYV----KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG 113
            W       KK+F       V+    +HG TLAA+S+         + PLL   +KV   
Sbjct: 130 YWRNRGKPRKKRF-------VTLTNSYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSP 182

Query: 114 D-----------------ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVR 155
           D                    +E+   E  D+IA  + EP IQG  G+ +    YLK +R
Sbjct: 183 DCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGAGGMRMYHPVYLKLLR 242

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
           + C +Y + +I DEI  G  R+G M A +   +RPD + L KAL GG +P++AVL    V
Sbjct: 243 EACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTV 302

Query: 216 MLC-------IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
                     ++   H  ++ GNPLA A A+A+LD+   + + E +  L   + +    +
Sbjct: 303 YQAFYDDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHL 362

Query: 269 QQQFPNYVKEVRGRGLFNAVEF-----DKTALP------VSAYDICLKMKERGILAKPTH 317
               P+ V EVR  G+  A+E       KT  P      +  Y   L   ERG L +P  
Sbjct: 363 ADH-PH-VAEVRQTGMILAIEMVQDKASKTPYPWQERRGLKVYQHAL---ERGALLRPL- 416

Query: 318 DTIVRLTPPLSISSNEL 334
            ++V   PP  I+  ++
Sbjct: 417 GSVVYFLPPYVITPEQI 433

Length = 466

>gnl|CDD|236336 PRK08742, PRK08742, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  116 bits (292), Expect = 6e-29
 Identities = 91/331 (27%), Positives = 152/331 (45%), Gaps = 43/331 (12%)

Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR 98
           V   + G+ GVE ALK+A  + Y   +        ++    +HG T+ A+++       R
Sbjct: 132 VFYADNGSAGVEVALKMA--FHYFHNRGEHRRTRFIALENGYHGETIGALAVGDIPLYRR 189

Query: 99  GFGPLL---------------PGHLKVDFGDITA--LEKIFKESGDQIAGFLFEP-IQGE 140
            + PLL               PG    D+    A  L+ +F++S  +I   + EP +Q  
Sbjct: 190 VYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEPRLQCA 249

Query: 141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG 200
            G+ +    YL+  R+LC  +   +IADEI +G  R+G + A +   V PD++ L K L 
Sbjct: 250 GGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLT 309

Query: 201 GGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERS 254
           GG +P+SAVLA +++              H  ++ GNPLA A A+A+LD+  D+ +  R+
Sbjct: 310 GGFLPLSAVLATQQLYDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARN 369

Query: 255 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE----------FDKTA-LPVSAYDIC 303
                 + Q   +I +    +V +VR  G+  A E          F   A + + AY   
Sbjct: 370 QPTAARMTQLAAQIGEH--PHVADVRQAGMVVAFELTRGGNKRTPFPPAARVGLHAYRAA 427

Query: 304 LKMKERGILAKPTHDTIVRLTPPLSISSNEL 334
           L    RG++ +P  D ++   PP  +   +L
Sbjct: 428 LA---RGVVLRPLGD-VLYWMPPYCVDEAQL 454

Length = 472

>gnl|CDD|235894 PRK06943, PRK06943, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  113 bits (284), Expect = 6e-28
 Identities = 96/356 (26%), Positives = 156/356 (43%), Gaps = 49/356 (13%)

Query: 27  AERLTSMFGYDM--VLPMNTGAEGVETALKLA----RKWGYV-KKKFSIDEAIIVSCCGC 79
           AERL ++ G  +      + GA  VE ALK++    R  G   K++F       V     
Sbjct: 103 AERLAALTGGTLGHAFFASDGASAVEIALKMSFHAWRNRGRGDKREF-------VCLANG 155

Query: 80  FHGRTLAAISMSCDNEAIR-GFGPLL---------------PGHLKVDFGD--ITALEKI 121
           +HG T+ A+ ++ D    +  + PL+               PG    D     +  + ++
Sbjct: 156 YHGETIGALGVT-DVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRL 214

Query: 122 FKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           F E   +IA  + EP +Q  AG+ +    YL+ +R LC +Y + +IADEI  G  R+G  
Sbjct: 215 FAERAGKIAALIVEPLVQCAAGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTF 274

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLA 234
            A +   V PD + L K + GG +P+S VL+   +       +      H  ++ GNPLA
Sbjct: 275 FACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFYDDDVTRGFLHSHSYTGNPLA 334

Query: 235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294
              A+A+LD+  ++ +  R+A     LR  L  +       V+ +R RG   A  FD   
Sbjct: 335 CRAALATLDLFAEDDVLARNARKSARLRAALAPLAAHPQ--VRHLRQRGTIFA--FDVAL 390

Query: 295 LPVSAYDIC----LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
              +A            ER +L +P   T V L PP  +  +E+   ++     L+
Sbjct: 391 DGDAARTFSRRFFEAALERELLLRPIGTT-VYLMPPYVLDDDEIAWLAERTRATLD 445

Length = 453

>gnl|CDD|234803 PRK00615, PRK00615, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  112 bits (282), Expect = 1e-27
 Identities = 79/260 (30%), Positives = 130/260 (50%), Gaps = 24/260 (9%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARK 58
             A+Q+ AE+ T  S    +++  +FAE L S  G +   +  +++G E   TA++LAR 
Sbjct: 75  CDAIQQGAERGT--SYGLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLAR- 131

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRT---LAAISMSCDN----EAIRGFGPLLPGHLKVD 111
            G   +      +II+   GC+HG     L  IS S  +      +       P  L + 
Sbjct: 132 -GITGR------SIIIKFLGCYHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLP 184

Query: 112 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171
           + D    + +    G ++AG +FEPI    GV++P  G+++ +   C +   L I DE+ 
Sbjct: 185 YNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIEGIIQTCRRTGSLSIMDEVV 244

Query: 172 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-GE--HGSTF 228
           +G  R  +  A+    V+PD+ + GK LGGG +P +AV+A K +M  + P G      T 
Sbjct: 245 TGF-RVAQGGAAAIYHVKPDITVYGKILGGG-LPAAAVVAHKSIMDHLAPEGTIFQAGTL 302

Query: 229 GGNPLASAVAIASLDVIRDE 248
            GNPLA A   AS+++ R++
Sbjct: 303 SGNPLAMAAGKASINLCREQ 322

Length = 433

>gnl|CDD|180174 PRK05630, PRK05630, adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

 Score =  112 bits (281), Expect = 1e-27
 Identities = 94/333 (28%), Positives = 151/333 (45%), Gaps = 35/333 (10%)

Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
           G D V   ++G+  VE A+K+A +  Y K +   +   +++    +HG T AA+S+ CD 
Sbjct: 99  GLDHVFYSDSGSVSVEVAIKMALQ--YSKGQGHPERTRLLTWRSGYHGDTFAAMSV-CDP 155

Query: 95  E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKES----GDQIAGFLFEPI-Q 138
           E             + F P  P    V       + +  +       + +A  + EPI Q
Sbjct: 156 EGGMHSLWKGTLPEQIFAPAPP----VRGSSPQEISEYLRSLELLIDETVAAIIIEPIVQ 211

Query: 139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKA 198
           G  G+       ++ VR LC K++IL+IADEI +G  R+G + A+    V PD++ +GKA
Sbjct: 212 GAGGMRFHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKA 271

Query: 199 LGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAE 252
           L GG +  +A L   +V   I          HG TF  NPLA AVA ASL++I      +
Sbjct: 272 LTGGFMSFAATLCTDKVAQLISTPNGGGALMHGPTFMANPLACAVAHASLEIIETGMWRK 331

Query: 253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL 312
           +   +  EL   L  +       V +VR  G    VE ++   PV   +      + G+ 
Sbjct: 332 QVKRIEAELIAGLSPLAHL--PGVADVRVLGAIGVVEMEQ---PVDMEEATQAAVDHGVW 386

Query: 313 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +P    +V + PP   +S ++ +   AL   +
Sbjct: 387 LRP-FGRLVYVMPPYITTSEQIAQICAALAAAV 418

Length = 422

>gnl|CDD|183493 PRK12389, PRK12389, glutamate-1-semialdehyde aminotransferase; Provisional

 Score =  108 bits (271), Expect = 4e-26
 Identities = 87/294 (29%), Positives = 130/294 (44%), Gaps = 57/294 (19%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFP---VFAERLT----SMFGYDMVLPMNTGAEGVETALK 54
           KA+ E AE   L     Y         FA+ L     S+   + V  +N+G E V T ++
Sbjct: 76  KAITEAAENGVL-----YGTPTELEIEFAKMLKEAIPSL---EKVRFVNSGTEAVMTTIR 127

Query: 55  LARKWGYVKKKFSIDEAIIVSCCGCFHGR-------------TL-----AAISMSCDNEA 96
           +AR   Y  +        I+   GC+HG              TL     A +  S   E 
Sbjct: 128 VAR--AYTGRT------KIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEV 179

Query: 97  IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
           I            V F DI AL++   + GD++A  L EPI G  G++ P  G+L+AV +
Sbjct: 180 I-----------TVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEAVNE 228

Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 216
           L  +   L+I DE+ +   R     A D   V PD+  LGK +GGG +P+ A    K++M
Sbjct: 229 LAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGG-LPIGAYGGRKDIM 286

Query: 217 LCIQ---PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFK 267
             +    P     T  GNP + A  IA L+V++ E + E+   LG  L + + +
Sbjct: 287 EQVAPLGPAYQAGTMAGNPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILE 340

Length = 428

>gnl|CDD|129782 TIGR00699, GABAtrns_euk, 4-aminobutyrate aminotransferase, eukaryotic type

 Score = 94.9 bits (236), Expect = 2e-21
 Identities = 76/333 (22%), Positives = 137/333 (41%), Gaps = 47/333 (14%)

Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKK-----FSIDEAI--------------IVS 75
           G D V    +G++  E A K A  +   K++     FS +E                I+S
Sbjct: 121 GQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSEEENESCMDNQAPGSPDLSILS 180

Query: 76  CCGCFHGRTLAAISMSCDNEAIRGFG------PLLP---------GHLKVDFGD----IT 116
             G FHGR   ++S +  ++ I          P  P          H+K +  +    + 
Sbjct: 181 FKGAFHGRLFGSLSTTR-SKPIHKLDIPAFDWPQAPFPSLKYPLEEHVKENAKEEQRCLE 239

Query: 117 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR 176
            +E + K+    +A  + EPIQ E G       + + +RD+  K+N+  I DE+Q+G+  
Sbjct: 240 EVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGA 299

Query: 177 SGRMLASD-WE-EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA 234
           +G+  A + W  +  PDMV   K                      +P    +T+ G+P  
Sbjct: 300 TGKFWAHEHWNLDDPPDMVTFSKKFQTA-----GYFFHDPAFRPNKPYRQFNTWMGDPSR 354

Query: 235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA 294
           + +    +  I+ + L E  AH+G+ L   L  +Q+++P +++ +RG+G    + +D T 
Sbjct: 355 ALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKYPEFIQNLRGKGRGTFIAWD-TP 413

Query: 295 LPVSAYDICLKMKERGILAKPTHDTIVRLTPPL 327
                  +  K +  G+         +RL P L
Sbjct: 414 DEAKRDKLLKKARNNGVNIGGCGVKAIRLRPML 446

This enzyme is a class III pyridoxal-phosphate-dependent aminotransferase. This model describes known eukaryotic examples of the enzyme. The degree of sequence difference between this set and known bacterial examples is greater than the distance between either set the most similar enzyme with distinct function, and so separate models are built for prokaryotic and eukaryotic sets. Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase [Central intermediary metabolism, Other]. Length = 464

>gnl|CDD|178100 PLN02482, PLN02482, glutamate-1-semialdehyde 2,1-aminomutase

 Score = 94.0 bits (234), Expect = 4e-21
 Identities = 65/221 (29%), Positives = 108/221 (48%), Gaps = 30/221 (13%)

Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKK--KFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
           +MV  +N+G E     L+LAR +   +K  KF           GC+HG   + +  +   
Sbjct: 156 EMVRFVNSGTEACMGVLRLARAYTGREKIIKFE----------GCYHGHADSFLVKAGSG 205

Query: 95  EAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIP 146
            A  G  P  PG         L   + D+ A++K+F+ +  +IA  + EP+ G +G I+P
Sbjct: 206 VATLGL-PDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVP 264

Query: 147 PDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVI 204
              +L+ +R++  +   L++ DE+ +G  +A  G   A ++  + PD+  LGK +GGG +
Sbjct: 265 KKEFLEGLREITKENGALLVFDEVMTGFRIAYGG---AQEYFGITPDLTTLGKVIGGG-L 320

Query: 205 PVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASL 242
           PV A    +E+M  + P        T  GNPLA    I +L
Sbjct: 321 PVGAYGGRREIMEMVAPAGPMYQAGTLSGNPLAMTAGIHTL 361

Length = 474

>gnl|CDD|180471 PRK06209, PRK06209, glutamate-1-semialdehyde 2,1-aminomutase; Provisional

 Score = 78.9 bits (195), Expect = 5e-16
 Identities = 74/262 (28%), Positives = 104/262 (39%), Gaps = 58/262 (22%)

Query: 27  AERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG------- 78
           AE    +  G DMV     G++    A++LAR   Y  +        +V+ C        
Sbjct: 94  AESFLELIDGADMVKFCKNGSDATSAAVRLAR--AYTGRD-------LVARCADHPFFST 144

Query: 79  --CFHGRT--LAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF 134
              F G T   A I  S  +     F           + DI +LE +F++   +IA  + 
Sbjct: 145 DDWFIGTTPMSAGIPAS-VSALTVTF----------RYNDIASLEALFEDHPGRIACVIL 193

Query: 135 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVI 194
           EP   +     P DG+L  VR LC +   L I DE+ +G     R  A     + PD+  
Sbjct: 194 EPATADE----PQDGFLHEVRRLCHENGALFILDEMITGFRWHMRG-AQKLYGIVPDLSC 248

Query: 195 LGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--------------TFGGNPLASAVAIA 240
            GKALG G   VSA+   +E M      E G               T G    A A AIA
Sbjct: 249 FGKALGNG-FAVSALAGKREYM------ELGGLEHTDRERVFLLSTTHGAETHALAAAIA 301

Query: 241 SLDVIRDEKLAERSAHLGEELR 262
           ++ + RDE + ER    G +L 
Sbjct: 302 TMAIYRDEDVIERLHEQGAKLA 323

Length = 431

>gnl|CDD|235917 PRK07046, PRK07046, aminotransferase; Validated

 Score = 76.6 bits (189), Expect = 3e-15
 Identities = 56/174 (32%), Positives = 81/174 (46%), Gaps = 32/174 (18%)

Query: 110 VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE 169
           V+F D+ ALE      GD +A  L EP     G+++P  G+ +A+R+L  +Y  L++ DE
Sbjct: 202 VEFNDLAALEAALA-DGD-VAAVLAEPAMTNIGMVLPEPGFHEALRELTRRYGTLLVIDE 259

Query: 170 ---IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP-----VSAVLAD--KEVMLCI 219
              I SG     R        + PD +++GK + GGV P      SA LA+  +      
Sbjct: 260 THTISSGPGGYTRAHG-----LEPDFLVVGKPIAGGV-PCAVYGFSAELAERAQAAKASA 313

Query: 220 QPGEH---GSTFGGNPLASAVAIASL-DVIRDE------KLAERSAHLGEELRQ 263
            PG H   G+T   N LA A   A+L +V+ +        LA R   L   LR 
Sbjct: 314 PPG-HSGIGTTLSANALAMAAMRATLAEVMTEAAYAHMLALAAR---LAAGLRA 363

Length = 453

>gnl|CDD|99742 cd01494, AAT_I, Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

 Score = 61.6 bits (150), Expect = 2e-11
 Identities = 36/183 (19%), Positives = 60/183 (32%), Gaps = 27/183 (14%)

Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
             E+L  +   G D  + + +G    E AL      G        DE I+ +       R
Sbjct: 5   LEEKLARLLQPGNDKAVFVPSGTGANEAALLALLGPG--------DEVIVDA--NGHGSR 54

Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV 143
              A  +     A     P+         G +        ++   +A  +  P     GV
Sbjct: 55  YWVAAEL---AGAKPVPVPVDDAGY----GGLDVAILEELKAKPNVALIVITPNTTSGGV 107

Query: 144 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGG 201
           ++P     K +R +  +Y IL++ D   +G A     +         D+V     K LGG
Sbjct: 108 LVPL----KEIRKIAKEYGILLLVDAASAGGASPAPGVLIPEG--GADVVTFSLHKNLGG 161

Query: 202 GVI 204
              
Sbjct: 162 EGG 164

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), and D-amino acid superfamily (fold type IV) and Glycogen phophorylase family (fold type V). Length = 170

>gnl|CDD|215526 PLN02974, PLN02974, adenosylmethionine-8-amino-7-oxononanoate transaminase

 Score = 59.7 bits (145), Expect = 1e-09
 Identities = 58/223 (26%), Positives = 98/223 (43%), Gaps = 32/223 (14%)

Query: 129 IAGFLFEP-IQGEAG-VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
           IA  + EP + G  G ++I P  + +A+  +C    I +I DE+ +GL R G   A +  
Sbjct: 585 IAALIIEPVLHGAGGMLLIDP-LFQRALVQVCRSRKIPVIFDEVFTGLWRLGVESAWELL 643

Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEV------------MLCIQPGEHGSTFGGNPLA 234
             +PD+    K L GG++P++A LA +EV            +L      HG ++  +P+ 
Sbjct: 644 GCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALL------HGHSYTAHPMG 697

Query: 235 SAVAIASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF 290
            A A  +L   +D      L    + L E   + L +     PN V+ V   G   A+E 
Sbjct: 698 CAAAAKALQWYKDPSTNPNLIPPGSRLRELWDEELVRAISSLPN-VERVVSLGTVLALEL 756

Query: 291 DKTA-----LPVSAYDICLKM-KERGILAKPTHDTIVRLTPPL 327
           D          + A  +  ++ +E GI A+P  + +  +  P 
Sbjct: 757 DAEGSGSGYSSLYARSVVRRLRREDGIYARPLGNVVYLMCGPT 799

Length = 817

>gnl|CDD|215756 pfam00155, Aminotran_1_2, Aminotransferase class I and II

 Score = 47.7 bits (114), Expect = 5e-06
 Identities = 35/164 (21%), Positives = 63/164 (38%), Gaps = 11/164 (6%)

Query: 114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG 173
           D  ALE   KE+ +     L        G +   +  L+ + DL  ++NIL++ DE  +G
Sbjct: 128 DFDALEAALKEATEGNKVVLHTSPHNPTGTVATLEE-LEKLLDLAKEHNILLLVDEAYAG 186

Query: 174 LARSGRMLASDWEEV--RPDMVI---LGKALGGGVIPVSAVLADKEV---MLCIQPGEHG 225
                    +    +   P++++     KA G     V  +L +  V   +  +    + 
Sbjct: 187 FVFGSLDAVATRALLAEGPNLLVVGSFSKAFGLAGWRVGYILGNAAVISQLRKLARPFYS 246

Query: 226 STFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKI 268
           ST      A+A     L V  + E++ +R     + LR  L   
Sbjct: 247 STHLQ-AAAAAALSDPLLVASELEEMRQRIKERRDYLRDGLEAA 289

Length = 357

>gnl|CDD|223234 COG0156, BioF, 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

 Score = 46.1 bits (110), Expect = 2e-05
 Identities = 48/173 (27%), Positives = 69/173 (39%), Gaps = 31/173 (17%)

Query: 114 DITALEKIFKESGDQIAGFLFEPIQG---EAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170
           D+  LE + +E+ +  A       +G     G I P    L  + +L  KY  L+  DE 
Sbjct: 154 DLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPELVELAEKYGALLYVDEA 209

Query: 171 QS-G-LARSGRMLA-SDWEEVRPDMVI---LGKALG--GGVIPVSAVLADKEVMLCIQPG 222
            + G L  +GR LA     E     +I   LGKALG  GG I  SA L D          
Sbjct: 210 HAVGVLGPNGRGLAEHFGLEPEEVDIIVGTLGKALGSSGGYIAGSAALIDYLR------- 262

Query: 223 EHGSTF----GGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLF 266
                F       P  +A A+A+L ++ +     E+L E +A     L+    
Sbjct: 263 NRARPFIFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALGL 315

Length = 388

>gnl|CDD|235655 PRK05958, PRK05958, 8-amino-7-oxononanoate synthase; Reviewed

 Score = 42.1 bits (100), Expect = 3e-04
 Identities = 38/145 (26%), Positives = 57/145 (39%), Gaps = 35/145 (24%)

Query: 148 DG---YLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWE-EVRPD---MVILGKA 198
           DG    L  +  L  ++   ++ DE      L   GR LA++      PD   +  LGKA
Sbjct: 181 DGDLAPLAELVALARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKA 240

Query: 199 LG--GGVIPVSAVLADKEVMLCIQPGEH----GSTF----GGNPLASAVAIASLDVIRDE 248
           LG  G      AVL  + +       ++       F       P  +A A A+L ++R E
Sbjct: 241 LGSSGA-----AVLGSETL------IDYLINRARPFIFTTALPPAQAAAARAALRILRRE 289

Query: 249 -----KLAERSAHLGEELRQHLFKI 268
                +LA   A L   LR   F++
Sbjct: 290 PERRERLAALIARLRAGLRALGFQL 314

Length = 385

>gnl|CDD|99734 cd00609, AAT_like, Aspartate aminotransferase family

 Score = 41.9 bits (99), Expect = 3e-04
 Identities = 46/250 (18%), Positives = 87/250 (34%), Gaps = 23/250 (9%)

Query: 107 HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI 166
            L  + G +  LE +      +             G ++  +  L+ + +L  K+ IL+I
Sbjct: 111 PLDEEGGFLLDLELLEAAKTPKTKLLYLNNPNNPTGAVLSEE-ELEELAELAKKHGILII 169

Query: 167 ADEIQSGLARSGR-MLASDWEEVRPDMVILG---KALGGGVIP---VSAVLADKEVMLCI 219
           +DE  + L   G    A    +    +++L    K  G   +P   +  ++A  E +L  
Sbjct: 170 SDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFG---LPGLRIGYLIAPPEELLER 226

Query: 220 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV 279
                  T  G    S  A A+     +E L E         R  L +  ++    V   
Sbjct: 227 LKKLLPYTTSGPSTLSQAAAAAALDDGEEHLEELRERYRRR-RDALLEALKELGPLVVVK 285

Query: 280 RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI------VRLTPPLSISSNE 333
              G F  ++  +         +   + E G++ +P           VRL+   +    E
Sbjct: 286 PSGGFFLWLDLPE---GDDEEFLERLLLEAGVVVRPGSAFGEGGEGFVRLS--FATPEEE 340

Query: 334 LQEGSKALHD 343
           L+E  + L +
Sbjct: 341 LEEALERLAE 350

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. The major groups in this CD corresponds to Aspartate aminotransferase a, b and c, Tyrosine, Alanine, Aromatic-amino-acid, Glutamine phenylpyruvate, 1-Aminocyclopropane-1-carboxylate synthase, Histidinol-phosphate, gene products of malY and cobC, Valine-pyruvate aminotransferase and Rhizopine catabolism regulatory protein. Length = 350

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
COG4992	404	ArgD Ornithine/acetylornithine aminotransferase [A	100.0
COG0160	447	GabT 4-aminobutyrate aminotransferase and related	100.0
COG0161	449	BioA Adenosylmethionine-8-amino-7-oxononanoate ami	100.0
PLN02624	474	ornithine-delta-aminotransferase	100.0
KOG1402	427	consensus Ornithine aminotransferase [Amino acid t	100.0
TIGR03372	442	putres_am_tran putrescine aminotransferase. Member	100.0
PRK11522	459	putrescine--2-oxoglutarate aminotransferase; Provi	100.0
TIGR03246	397	arg_catab_astC succinylornithine transaminase fami	100.0
PRK05965	459	hypothetical protein; Provisional	100.0
PRK01278	389	argD acetylornithine transaminase protein; Provisi	100.0
PRK04612	408	argD acetylornithine transaminase protein; Provisi	100.0
PRK07482	461	hypothetical protein; Provisional	100.0
PLN00144	382	acetylornithine transaminase	100.0
PRK07678	451	aminotransferase; Validated	100.0
PRK12381	406	bifunctional succinylornithine transaminase/acetyl	100.0
PRK06943	453	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK08742	472	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07030	466	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07481	449	hypothetical protein; Provisional	100.0
PRK04073	396	rocD ornithine--oxo-acid transaminase; Provisional	100.0
PRK07483	443	hypothetical protein; Provisional	100.0
PLN02760	504	4-aminobutyrate:pyruvate transaminase	100.0
PRK07495	425	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06062	451	hypothetical protein; Provisional	100.0
PRK06916	460	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06173	429	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK07986	428	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK03715	395	argD acetylornithine transaminase protein; Provisi	100.0
KOG1404	442	consensus Alanine-glyoxylate aminotransferase AGT2	100.0
PRK08593	445	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06105	460	aminotransferase; Provisional	100.0
PRK07036	466	hypothetical protein; Provisional	100.0
PRK04013	364	argD acetylornithine/acetyl-lysine aminotransferas	100.0
PRK13360	442	omega amino acid--pyruvate transaminase; Provision	100.0
PRK06541	460	hypothetical protein; Provisional	100.0
PRK09221	445	beta alanine--pyruvate transaminase; Provisional	100.0
PRK05964	423	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK06777	421	4-aminobutyrate aminotransferase; Provisional	100.0
PRK07480	456	putative aminotransferase; Validated	100.0
PRK06938	464	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
TIGR00700	420	GABAtrnsam 4-aminobutyrate aminotransferase, proka	100.0
PRK06058	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09792	421	4-aminobutyrate transaminase; Provisional	100.0
TIGR02407	412	ectoine_ectB diaminobutyrate--2-oxoglutarate amino	100.0
PRK05630	422	adenosylmethionine--8-amino-7-oxononanoate transam	100.0
PRK05093	403	argD bifunctional N-succinyldiaminopimelate-aminot	100.0
TIGR00709	442	dat 2,4-diaminobutyrate 4-transaminases. This fami	100.0
PRK06082	459	4-aminobutyrate aminotransferase; Provisional	100.0
PRK08117	433	4-aminobutyrate aminotransferase; Provisional	100.0
PRK05639	457	4-aminobutyrate aminotransferase; Provisional	100.0
PRK06917	447	hypothetical protein; Provisional	100.0
PRK12403	460	putative aminotransferase; Provisional	100.0
PRK08360	443	4-aminobutyrate aminotransferase; Provisional	100.0
PRK09264	425	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
PRK06931	459	diaminobutyrate--2-oxoglutarate aminotransferase;	100.0
TIGR01885	401	Orn_aminotrans ornithine aminotransferase. This mo	100.0
KOG1401	433	consensus Acetylornithine aminotransferase [Amino	100.0
PRK03244	398	argD acetylornithine aminotransferase; Provisional	100.0
PRK05769	441	4-aminobutyrate aminotransferase; Provisional	100.0
PRK00854	401	rocD ornithine--oxo-acid transaminase; Reviewed	100.0
PRK02936	377	argD acetylornithine aminotransferase; Provisional	100.0
PRK06918	451	4-aminobutyrate aminotransferase; Reviewed	100.0
PTZ00125	400	ornithine aminotransferase-like protein; Provision	100.0
PRK02627	396	acetylornithine aminotransferase; Provisional	100.0
PLN02974	817	adenosylmethionine-8-amino-7-oxononanoate transami	100.0
TIGR00508	427	bioA adenosylmethionine-8-amino-7-oxononanoate tra	100.0
PRK08297	443	L-lysine aminotransferase; Provisional	100.0
PRK06148	1013	hypothetical protein; Provisional	100.0
COG0001	432	HemL Glutamate-1-semialdehyde aminotransferase [Co	100.0
PRK12389	428	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
TIGR00699	464	GABAtrns_euk 4-aminobutyrate aminotransferase, euk	100.0
cd00610	413	OAT_like Acetyl ornithine aminotransferase family.	100.0
PLN02482	474	glutamate-1-semialdehyde 2,1-aminomutase	100.0
PRK06149	972	hypothetical protein; Provisional	100.0
TIGR00713	423	hemL glutamate-1-semialdehyde-2,1-aminomutase. Thi	100.0
TIGR00707	379	argD acetylornithine and succinylornithine aminotr	100.0
TIGR03251	431	LAT_fam L-lysine 6-transaminase. Characterized mem	100.0
PRK08088	425	4-aminobutyrate aminotransferase; Validated	100.0
PRK00615	433	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK04260	375	acetylornithine aminotransferase; Provisional	100.0
PRK07046	453	aminotransferase; Validated	100.0
PF00202	339	Aminotran_3: Aminotransferase class-III; InterPro:	100.0
PRK00062	426	glutamate-1-semialdehyde aminotransferase; Provisi	100.0
PRK06209	431	glutamate-1-semialdehyde 2,1-aminomutase; Provisio	100.0
KOG1403	452	consensus Predicted alanine-glyoxylate aminotransf	100.0
COG0436	393	Aspartate/tyrosine/aromatic aminotransferase [Amin	100.0
PLN02822	481	serine palmitoyltransferase	99.97
PRK06207	405	aspartate aminotransferase; Provisional	99.97
PRK07324	373	transaminase; Validated	99.97
PRK13393	406	5-aminolevulinate synthase; Provisional	99.97
PRK07682	378	hypothetical protein; Validated	99.97
TIGR01821	402	5aminolev_synth 5-aminolevulinic acid synthase. Th	99.97
PRK09064	407	5-aminolevulinate synthase; Validated	99.97
PRK06108	382	aspartate aminotransferase; Provisional	99.97
PLN03227	392	serine palmitoyltransferase-like protein; Provisio	99.97
PRK15481	431	transcriptional regulatory protein PtsJ; Provision	99.97
COG1167	459	ARO8 Transcriptional regulators containing a DNA-b	99.97
PRK01533	366	histidinol-phosphate aminotransferase; Validated	99.97
PLN00175	413	aminotransferase family protein; Provisional	99.97
PRK07681	399	aspartate aminotransferase; Provisional	99.97
PRK03317	368	histidinol-phosphate aminotransferase; Provisional	99.96
PRK07366	388	succinyldiaminopimelate transaminase; Validated	99.96
PRK07179	407	hypothetical protein; Provisional	99.96
COG0079	356	HisC Histidinol-phosphate/aromatic aminotransferas	99.96
PRK06225	380	aspartate aminotransferase; Provisional	99.96
KOG1405	484	consensus 4-aminobutyrate aminotransferase [Amino	99.96
PRK08960	387	hypothetical protein; Provisional	99.96
PRK05957	389	aspartate aminotransferase; Provisional	99.96
PRK07309	391	aromatic amino acid aminotransferase; Validated	99.96
PRK06348	384	aspartate aminotransferase; Provisional	99.96
KOG0257	420	consensus Kynurenine aminotransferase, glutamine t	99.96
PLN02187	462	rooty/superroot1	99.96
COG0156	388	BioF 7-keto-8-aminopelargonate synthetase and rela	99.96
PRK12414	384	putative aminotransferase; Provisional	99.96
PRK09082	386	methionine aminotransferase; Validated	99.96
PRK08636	403	aspartate aminotransferase; Provisional	99.96
PRK09148	405	aminotransferase; Validated	99.96
TIGR01822	393	2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A lig	99.96
PRK08361	391	aspartate aminotransferase; Provisional	99.96
PRK06425	332	histidinol-phosphate aminotransferase; Validated	99.96
PRK06290	410	aspartate aminotransferase; Provisional	99.96
PRK07505	402	hypothetical protein; Provisional	99.96
PRK09147	396	succinyldiaminopimelate transaminase; Provisional	99.96
PRK08153	369	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR03537	350	DapC succinyldiaminopimelate transaminase. Note: t	99.96
PRK13392	410	5-aminolevulinate synthase; Provisional	99.96
PTZ00433	412	tyrosine aminotransferase; Provisional	99.96
PLN02955	476	8-amino-7-oxononanoate synthase	99.96
PRK02610	374	histidinol-phosphate aminotransferase; Provisional	99.96
TIGR03540	383	DapC_direct LL-diaminopimelate aminotransferase. T	99.96
PRK08068	389	transaminase; Reviewed	99.96
TIGR01264	401	tyr_amTase_E tyrosine aminotransferase, eukaryotic	99.96
PRK07683	387	aminotransferase A; Validated	99.96
PRK05958	385	8-amino-7-oxononanoate synthase; Reviewed	99.96
PRK06939	397	2-amino-3-ketobutyrate coenzyme A ligase; Provisio	99.96
PRK09276	385	LL-diaminopimelate aminotransferase; Provisional	99.96
PLN00145	430	tyrosine/nicotianamine aminotransferase; Provision	99.96
PRK03158	359	histidinol-phosphate aminotransferase; Provisional	99.96
COG1168	388	MalY Bifunctional PLP-dependent enzyme with beta-c	99.96
PLN02483	489	serine palmitoyltransferase	99.95
PRK05942	394	aspartate aminotransferase; Provisional	99.95
PRK08912	387	hypothetical protein; Provisional	99.95
PRK05664	330	threonine-phosphate decarboxylase; Reviewed	99.95
PLN00143	409	tyrosine/nicotianamine aminotransferase; Provision	99.95
PLN02656	409	tyrosine transaminase	99.95
PRK08175	395	aminotransferase; Validated	99.95
TIGR00858	360	bioF 8-amino-7-oxononanoate synthase. This model r	99.95
TIGR01825	385	gly_Cac_T_rel pyridoxal phosphate-dependent acyltr	99.95
PRK13355	517	bifunctional HTH-domain containing protein/aminotr	99.95
PRK02731	367	histidinol-phosphate aminotransferase; Validated	99.95
PRK06107	402	aspartate aminotransferase; Provisional	99.95
PRK06855	433	aminotransferase; Validated	99.95
PRK07337	388	aminotransferase; Validated	99.95
PLN02376	496	1-aminocyclopropane-1-carboxylate synthase	99.95
PRK07777	387	aminotransferase; Validated	99.95
PRK07550	386	hypothetical protein; Provisional	99.95
PRK06358	354	threonine-phosphate decarboxylase; Provisional	99.95
PRK07865	364	N-succinyldiaminopimelate aminotransferase; Review	99.95
PRK14807	351	histidinol-phosphate aminotransferase; Provisional	99.95
PRK05764	393	aspartate aminotransferase; Provisional	99.95
TIGR03539	357	DapC_actino succinyldiaminopimelate transaminase.	99.95
PRK07568	397	aspartate aminotransferase; Provisional	99.95
TIGR03538	393	DapC_gpp succinyldiaminopimelate transaminase. Thi	99.95
PRK14809	357	histidinol-phosphate aminotransferase; Provisional	99.95
PRK08363	398	alanine aminotransferase; Validated	99.95
PLN03026	380	histidinol-phosphate aminotransferase; Provisional	99.95
TIGR01265	403	tyr_nico_aTase tyrosine/nicotianamine aminotransfe	99.95
PRK01688	351	histidinol-phosphate aminotransferase; Provisional	99.95
PRK05839	374	hypothetical protein; Provisional	99.95
TIGR02539	370	SepCysS Sep-tRNA:Cys-tRNA synthase. Aminoacylation	99.95
PTZ00377	481	alanine aminotransferase; Provisional	99.95
PRK00950	361	histidinol-phosphate aminotransferase; Validated	99.95
PLN02450	468	1-aminocyclopropane-1-carboxylate synthase	99.94
KOG0259	447	consensus Tyrosine aminotransferase [Amino acid tr	99.94
PRK09105	370	putative aminotransferase; Provisional	99.94
PRK08056	356	threonine-phosphate decarboxylase; Provisional	99.94
PRK03321	352	putative aminotransferase; Provisional	99.94
TIGR03392	398	FeS_syn_CsdA cysteine desulfurase, catalytic subun	99.94
PRK09440	416	avtA valine--pyruvate transaminase; Provisional	99.94
cd06454	349	KBL_like KBL_like; this family belongs to the pyri	99.94
PLN02607	447	1-aminocyclopropane-1-carboxylate synthase	99.94
PRK04870	356	histidinol-phosphate aminotransferase; Provisional	99.94
PRK04781	364	histidinol-phosphate aminotransferase; Provisional	99.94
PRK07590	409	L,L-diaminopimelate aminotransferase; Validated	99.94
PRK05166	371	histidinol-phosphate aminotransferase; Provisional	99.94
PLN02721	353	threonine aldolase	99.94
PLN02231	534	alanine transaminase	99.94
PRK09275	527	aspartate aminotransferase; Provisional	99.94
PRK06959	339	putative threonine-phosphate decarboxylase; Provis	99.94
PTZ00376	404	aspartate aminotransferase; Provisional	99.94
PRK05387	353	histidinol-phosphate aminotransferase; Provisional	99.94
PRK06836	394	aspartate aminotransferase; Provisional	99.94
TIGR01141	346	hisC histidinol-phosphate aminotransferase. Histid	99.94
PRK08637	388	hypothetical protein; Provisional	99.94
TIGR03542	402	DAPAT_plant LL-diaminopimelate aminotransferase. T	99.94
TIGR03576	346	pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158	99.94
TIGR01140	330	L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxy	99.94
PRK08354	311	putative aminotransferase; Provisional	99.94
PRK09265	404	aminotransferase AlaT; Validated	99.94
PRK14808	335	histidinol-phosphate aminotransferase; Provisional	99.94
PF00155	363	Aminotran_1_2: Aminotransferase class I and II 1-a	99.94
PRK10874	401	cysteine sulfinate desulfinase; Provisional	99.94
PRK07392	360	threonine-phosphate decarboxylase; Validated	99.93
TIGR03301	355	PhnW-AepZ 2-aminoethylphosphonate aminotransferase	99.93
COG0520	405	csdA Selenocysteine lyase/Cysteine desulfurase [Po	99.93
PRK04635	354	histidinol-phosphate aminotransferase; Provisional	99.93
PRK09257	396	aromatic amino acid aminotransferase; Provisional	99.93
cd00609	350	AAT_like Aspartate aminotransferase family. This f	99.93
TIGR03801	521	asp_4_decarbox aspartate 4-decarboxylase. This enz	99.93
TIGR02326	363	transamin_PhnW 2-aminoethylphosphonate--pyruvate t	99.93
cd06451	356	AGAT_like Alanine-glyoxylate aminotransferase (AGA	99.93
cd06453	373	SufS_like Cysteine desulfurase (SufS)-like. This f	99.93
PRK05937	370	8-amino-7-oxononanoate synthase; Provisional	99.92
PLN02672	1082	methionine S-methyltransferase	99.92
PRK09295	406	bifunctional cysteine desulfurase/selenocysteine l	99.92
PRK09331	387	Sep-tRNA:Cys-tRNA synthetase; Provisional	99.92
PRK13520	371	L-tyrosine decarboxylase; Provisional	99.92
PLN02397	423	aspartate transaminase	99.91
TIGR01979	403	sufS cysteine desulfurases, SufS subfamily. This m	99.91
cd00613	398	GDC-P Glycine cleavage system P-protein, alpha- an	99.91
cd06502	338	TA_like Low-specificity threonine aldolase (TA). T	99.91
TIGR03402	379	FeS_nifS cysteine desulfurase NifS. Members of thi	99.91
cd06452	361	SepCysS Sep-tRNA:Cys-tRNA synthase. This family be	99.91
PRK13479	368	2-aminoethylphosphonate--pyruvate transaminase; Pr	99.91
PRK10534	333	L-threonine aldolase; Provisional	99.91
PRK03967	337	histidinol-phosphate aminotransferase; Provisional	99.91
PLN02409	401	serine--glyoxylate aminotransaminase	99.91
COG0399	374	WecE Predicted pyridoxal phosphate-dependent enzym	99.91
PLN02855	424	Bifunctional selenocysteine lyase/cysteine desulfu	99.91
KOG1360	570	consensus 5-aminolevulinate synthase [Coenzyme tra	99.91
KOG0634	472	consensus Aromatic amino acid aminotransferase and	99.91
PRK13238	460	tnaA tryptophanase/L-cysteine desulfhydrase, PLP-d	99.9
KOG0256	471	consensus 1-aminocyclopropane-1-carboxylate syntha	99.9
COG1104	386	NifS Cysteine sulfinate desulfinase/cysteine desul	99.9
TIGR01976	397	am_tr_V_VC1184 cysteine desulfurase family protein	99.9
PRK07908	349	hypothetical protein; Provisional	99.9
TIGR02379	376	ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase	99.9
TIGR01977	376	am_tr_V_EF2568 cysteine desulfurase family protein	99.9
PLN02368	407	alanine transaminase	99.9
PRK02948	381	cysteine desulfurase; Provisional	99.89
PLN02242	418	methionine gamma-lyase	99.89
cd00614	369	CGS_like CGS_like: Cystathionine gamma-synthase is	99.89
TIGR03812	373	tyr_de_CO2_Arch tyrosine decarboxylase MnfA. Membe	99.89
PRK11706	375	TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisio	99.89
KOG1368	384	consensus Threonine aldolase [Amino acid transport	99.88
cd00617	431	Tnase_like Tryptophanase family (Tnase). This fami	99.88
TIGR01814	406	kynureninase kynureninase. This model describes ky	99.88
TIGR01437	363	selA_rel uncharacterized pyridoxal phosphate-depen	99.88
cd00616	352	AHBA_syn 3-amino-5-hydroxybenzoic acid synthase fa	99.87
PRK06767	386	methionine gamma-lyase; Provisional	99.87
PRK08249	398	cystathionine gamma-synthase; Provisional	99.87
PRK06234	400	methionine gamma-lyase; Provisional	99.87
cd06450	345	DOPA_deC_like DOPA decarboxylase family. This fami	99.87
PF00266	371	Aminotran_5: Aminotransferase class-V; InterPro: I	99.87
KOG1359	417	consensus Glycine C-acetyltransferase/2-amino-3-ke	99.87
TIGR01325	380	O_suc_HS_sulf O-succinylhomoserine sulfhydrylase.	99.87
PRK07049	427	methionine gamma-lyase; Validated	99.87
TIGR03403	382	nifS_epsilon cysteine desulfurase, NifS family, ep	99.87
PRK08247	366	cystathionine gamma-synthase; Reviewed	99.86
COG0075	383	Serine-pyruvate aminotransferase/archaeal aspartat	99.86
PLN02651	364	cysteine desulfurase	99.86
COG3977	417	Alanine-alpha-ketoisovalerate (or valine-pyruvate)	99.86
PRK11658	379	UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate amin	99.86
TIGR02006	402	IscS cysteine desulfurase IscS. This model represe	99.86
cd00378	402	SHMT Serine-glycine hydroxymethyltransferase (SHMT	99.86
COG2008	342	GLY1 Threonine aldolase [Amino acid transport and	99.86
PRK08045	386	cystathionine gamma-synthase; Provisional	99.86
PRK06460	376	hypothetical protein; Provisional	99.86
PRK08133	390	O-succinylhomoserine sulfhydrylase; Validated	99.86
TIGR02080	382	O_succ_thio_ly O-succinylhomoserine (thiol)-lyase.	99.86
PF01041	363	DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransfe	99.86
PRK07504	398	O-succinylhomoserine sulfhydrylase; Reviewed	99.86
TIGR01328	391	met_gam_lyase methionine gamma-lyase. This model d	99.86
PRK07050	394	cystathionine beta-lyase; Provisional	99.85
PRK13034	416	serine hydroxymethyltransferase; Reviewed	99.85
PRK07503	403	methionine gamma-lyase; Provisional	99.85
PRK07810	403	O-succinylhomoserine sulfhydrylase; Provisional	99.85
PRK07269	364	cystathionine gamma-synthase; Reviewed	99.84
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.84
PRK05968	389	hypothetical protein; Provisional	99.84
TIGR01324	377	cysta_beta_ly_B cystathionine beta-lyase, bacteria	99.84
PRK08776	405	cystathionine gamma-synthase; Provisional	99.84
PRK14012	404	cysteine desulfurase; Provisional	99.84
PRK07811	388	cystathionine gamma-synthase; Provisional	99.84
PRK15407	438	lipopolysaccharide biosynthesis protein RfbH; Prov	99.83
PRK08861	388	cystathionine gamma-synthase; Provisional	99.83
PRK08574	385	cystathionine gamma-synthase; Provisional	99.83
PRK00011	416	glyA serine hydroxymethyltransferase; Reviewed	99.83
PRK00451	447	glycine dehydrogenase subunit 1; Validated	99.83
PRK07582	366	cystathionine gamma-lyase; Validated	99.83
TIGR03588	380	PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-amin	99.83
PRK06084	425	O-acetylhomoserine aminocarboxypropyltransferase;	99.83
TIGR01326	418	OAH_OAS_sulfhy OAH/OAS sulfhydrylase. This model d	99.82
PRK09028	394	cystathionine beta-lyase; Provisional	99.81
KOG0633	375	consensus Histidinol phosphate aminotransferase [A	99.81
PRK12566	954	glycine dehydrogenase; Provisional	99.81
PRK08064	390	cystathionine beta-lyase; Provisional	99.81
TIGR01329	378	cysta_beta_ly_E cystathionine beta-lyase, eukaryot	99.81
PRK05967	395	cystathionine beta-lyase; Provisional	99.81
PRK06702	432	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
COG1003	496	GcvP Glycine cleavage system protein P (pyridoxal-	99.8
PRK08248	431	O-acetylhomoserine aminocarboxypropyltransferase;	99.8
PRK05939	397	hypothetical protein; Provisional	99.79
PRK04366	481	glycine dehydrogenase subunit 2; Validated	99.79
PRK06176	380	cystathionine gamma-synthase/cystathionine beta-ly	99.79
PRK08134	433	O-acetylhomoserine aminocarboxypropyltransferase;	99.79
PTZ00094	452	serine hydroxymethyltransferase; Provisional	99.78
KOG1358	467	consensus Serine palmitoyltransferase [Posttransla	99.78
PLN02509	464	cystathionine beta-lyase	99.78
PRK13580	493	serine hydroxymethyltransferase; Provisional	99.78
PRK07671	377	cystathionine beta-lyase; Provisional	99.78
PRK05367	954	glycine dehydrogenase; Provisional	99.78
PRK05994	427	O-acetylhomoserine aminocarboxypropyltransferase;	99.78
PRK08114	395	cystathionine beta-lyase; Provisional	99.77
PRK02769	380	histidine decarboxylase; Provisional	99.77
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	99.76
TIGR03235	353	DNA_S_dndA cysteine desulfurase DndA. This model d	99.76
PF01053	386	Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent	99.76
KOG2862	385	consensus Alanine-glyoxylate aminotransferase AGT1	99.76
PRK07812	436	O-acetylhomoserine aminocarboxypropyltransferase;	99.76
COG2873	426	MET17 O-acetylhomoserine sulfhydrylase [Amino acid	99.75
KOG1357	519	consensus Serine palmitoyltransferase [Posttransla	99.75
PRK03080	378	phosphoserine aminotransferase; Provisional	99.75
KOG1549	428	consensus Cysteine desulfurase NFS1 [Amino acid tr	99.74
cd00615	294	Orn_deC_like Ornithine decarboxylase family. This	99.74
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	99.73
TIGR03531	444	selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium tr	99.72
PLN03226	475	serine hydroxymethyltransferase; Provisional	99.72
TIGR01366	361	serC_3 phosphoserine aminotransferase, putative. T	99.72
TIGR01788	431	Glu-decarb-GAD glutamate decarboxylase. This model	99.72
TIGR01364	349	serC_1 phosphoserine aminotransferase. This model	99.7
PLN03032	374	serine decarboxylase; Provisional	99.7
PRK06434	384	cystathionine gamma-lyase; Validated	99.7
PRK05355	360	3-phosphoserine/phosphohydroxythreonine aminotrans	99.7
PRK04311	464	selenocysteine synthase; Provisional	99.69
PRK05613	437	O-acetylhomoserine aminocarboxypropyltransferase;	99.69
COG0626	396	MetC Cystathionine beta-lyases/cystathionine gamma	99.68
TIGR02618	450	tyr_phenol_ly tyrosine phenol-lyase. This model de	99.67
PLN02724	805	Molybdenum cofactor sulfurase	99.67
PLN02880	490	tyrosine decarboxylase	99.67
PRK13237	460	tyrosine phenol-lyase; Provisional	99.66
TIGR00474	454	selA seryl-tRNA(sec) selenium transferase. In bact	99.65
PLN02590	539	probable tyrosine decarboxylase	99.64
KOG0053	409	consensus Cystathionine beta-lyases/cystathionine	99.64
PF12897	425	Aminotran_MocR: Alanine-glyoxylate amino-transfera	99.63
cd00611	355	PSAT_like Phosphoserine aminotransferase (PSAT) fa	99.61
PRK15029	755	arginine decarboxylase; Provisional	99.61
PF01276	417	OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain;	99.6
PLN02263	470	serine decarboxylase	99.6
cd01494	170	AAT_I Aspartate aminotransferase (AAT) superfamily	99.59
COG1103	382	Archaea-specific pyridoxal phosphate-dependent enz	99.59
PRK13578	720	ornithine decarboxylase; Provisional	99.53
TIGR03799	522	NOD_PanD_pyr putative pyridoxal-dependent aspartat	99.52
COG0112	413	GlyA Glycine/serine hydroxymethyltransferase [Amin	99.51
COG3844	407	Kynureninase [Amino acid transport and metabolism]	99.5
PRK15400	714	lysine decarboxylase CadA; Provisional	99.49
PRK15399	713	lysine decarboxylase LdcC; Provisional	99.48
COG1448	396	TyrB Aspartate/tyrosine/aromatic aminotransferase	99.47
PLN02271	586	serine hydroxymethyltransferase	99.46
PLN02452	365	phosphoserine transaminase	99.45
TIGR01365	374	serC_2 phosphoserine aminotransferase, Methanosarc	99.43
TIGR02617	467	tnaA_trp_ase tryptophanase, leader peptide-associa	99.43
KOG0258	475	consensus Alanine aminotransferase [Amino acid tra	99.42
PF00464	399	SHMT: Serine hydroxymethyltransferase; InterPro: I	99.4
PF01212	290	Beta_elim_lyase: Beta-eliminating lyase; InterPro:	99.4
COG0076	460	GadB Glutamate decarboxylase and related PLP-depen	99.39
PLN02414	993	glycine dehydrogenase (decarboxylating)	99.36
PRK12462	364	phosphoserine aminotransferase; Provisional	99.33
PRK05367	954	glycine dehydrogenase; Provisional	99.26
COG1982	557	LdcC Arginine/lysine/ornithine decarboxylases [Ami	99.23
PF00282	373	Pyridoxal_deC: Pyridoxal-dependent decarboxylase c	99.17
COG3033	471	TnaA Tryptophanase [Amino acid transport and metab	99.15
TIGR00461	939	gcvP glycine dehydrogenase (decarboxylating). This	98.94
KOG3846	465	consensus L-kynurenine hydrolase [Amino acid trans	98.94
PF03841	367	SelA: L-seryl-tRNA selenium transferase; InterPro:	98.93
PF06838	403	Met_gamma_lyase: Methionine gamma-lyase ; InterPro	98.93
COG1921	395	SelA Selenocysteine synthase [seryl-tRNASer seleni	98.91
PF05889	389	SLA_LP_auto_ag: Soluble liver antigen/liver pancre	98.86
PF04864	363	Alliinase_C: Allinase; InterPro: IPR006948 Allicin	98.83
PF02347	429	GDC-P: Glycine cleavage system P-protein; InterPro	98.79
KOG1383	491	consensus Glutamate decarboxylase/sphingosine phos	98.79
KOG0629	510	consensus Glutamate decarboxylase and related prot	98.78
COG0403	450	GcvP Glycine cleavage system protein P (pyridoxal-	98.74
TIGR03811	608	tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcu	98.71
KOG2467	477	consensus Glycine/serine hydroxymethyltransferase	98.33
KOG1412	410	consensus Aspartate aminotransferase/Glutamic oxal	98.28
COG1932	365	SerC Phosphoserine aminotransferase [Coenzyme meta	98.15
PRK12566	954	glycine dehydrogenase; Provisional	98.15
COG4100	416	Cystathionine beta-lyase family protein involved i	98.13
KOG0628	511	consensus Aromatic-L-amino-acid/L-histidine decarb	98.11
KOG1411	427	consensus Aspartate aminotransferase/Glutamic oxal	97.64
KOG3843	432	consensus Predicted serine hydroxymethyltransferas	97.43
PLN02994	153	1-aminocyclopropane-1-carboxylate synthase	97.27
KOG2040	1001	consensus Glycine dehydrogenase (decarboxylating)	96.05

>COG4992 ArgD Ornithine/acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1e-59  Score=420.02  Aligned_cols=335  Identities=45%  Similarity=0.723  Sum_probs=318.9

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC-CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      ++|+.+|++++++.++.+.++...+|+++|++..+ .++++|+|||+||+|.|++++|.++.     ++++.+||.+..+
T Consensus        64 v~al~~Q~~kl~h~sn~~~~~~~~~la~~L~~~s~~~d~vff~NSGaEA~EaAiKlARk~~~-----~~~k~~Iia~~ns  138 (404)
T COG4992          64 VEALKEQAEKLWHVSNLFYNEPQAELAEKLVELSPFADRVFFCNSGAEANEAALKLARKYTG-----DPEKSKIIAFENS  138 (404)
T ss_pred             HHHHHHHHHHhhhcccccCChHHHHHHHHHHhhCccccEEEEcCCcHHHHHHHHHHHHHHcC-----CCCCcEEEEEcCC
Confidence            47899999999999999999999999999999996 99999999999999999999998763     3456899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      |||.+.++.++++++.++.+|.|+.+++.++||+|+++++++++   ++|++|++||+++.+|.+.+++++++++.++|+
T Consensus       139 FHGRT~galS~t~~~ky~~~F~Pl~~g~~~vpfnDi~al~~ai~---~~taAvivEPIQGEgGV~~~~~~fl~~lr~lCd  215 (404)
T COG4992         139 FHGRTLGALSATGQPKYRKGFGPLLPGFRHVPFNDIEALEAAID---EDTAAVIVEPIQGEGGVIPAPPEFLKALRELCD  215 (404)
T ss_pred             cCCccceeeeccCChhhccCCCCCCCCceecCCCCHHHHHHHhc---cCeEEEEEecccCCCCCCCCCHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999   589999999999999999999999999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      +||+++|.||+|+|+||+|+.|+++++++.||+++++|++|||+ |+|.+++++.+.+.+.+..|++||.+|+++++++.
T Consensus       216 ~~g~LLI~DEVQtG~GRTGk~fA~e~~gV~PDI~tlaK~LgGG~-PigA~la~~~~~~~~~~G~HgSTfGGNpLacAv~~  294 (404)
T COG4992         216 EHGALLILDEVQTGLGRTGKLFAYEHYGVEPDILTLAKALGGGF-PIGAMLATEEIASAFTPGDHGSTFGGNPLACAVAL  294 (404)
T ss_pred             HhCeEEEEeccccCCCccchHHHHHHhCCCCCEEEeeccccCCc-cceeeEEchhhhhcCCCCcccCCCCcCHHHHHHHH
Confidence            99999999999999999999999999999999999999999998 99999999777888999999999999999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCC
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDT  319 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~  319 (374)
                      ++++.+.++++.++.++.+++++++|+++...+| ++..+++.|+++++++....   .+.++++.|.++|+++.+.+++
T Consensus       295 a~l~~l~~e~ll~~v~~~g~~~~~~L~~l~~~~~-~v~~vRG~GLmiGiel~~~~---~a~~~~~~~~~~gvL~~~a~~~  370 (404)
T COG4992         295 AVLEVLLEEGLLENVREKGEYLLQRLRELKRRYP-LVKEVRGRGLMIGIELKEPY---RARDIVRALREEGVLVLPAGPN  370 (404)
T ss_pred             HHHHHHcchhHHHHHHHHHHHHHHHHHHHhhcCC-ceeeeecceeEEEEEecCcc---cHHHHHHHHHHCCeEEecCCCC
Confidence            9999999999999999999999999999998886 89999999999999997653   4789999999999999999999


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+|+.||+.++++++++++++|+++++ ..
T Consensus       371 ViR~~PpL~i~~eei~~~~~~l~~~l~-~~  399 (404)
T COG4992         371 VIRFLPPLVITEEEIDEALDALERALA-AA  399 (404)
T ss_pred             eEEecCCccCCHHHHHHHHHHHHHHHH-Hh
Confidence            999999999999999999999999998 54

>COG0160 GabT 4-aminobutyrate aminotransferase and related aminotransferases [Amino acid transport and metabolism]

Probab=100.00  E-value=3.9e-51  Score=376.04  Aligned_cols=337  Identities=42%  Similarity=0.712  Sum_probs=299.6

Q ss_pred             ChHHHHHHHhccccCcCCCC-CcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSSRAFYN-DKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|+++|++++.|+...+.. +...+++++|.+..   +.+.++|++||++|++.|+++++.++        ++..||.+
T Consensus        78 v~Av~~q~~~~~h~~~~~~~~e~~v~~ae~L~~~~p~~~~~~~~f~~sGaeA~E~AiKiAr~~T--------gr~~viaf  149 (447)
T COG0160          78 VEAVKRQLAKLNHTHTRDLYYEPYVELAEKLTALAPGSGLKKVFFGNSGAEAVEAAIKIARAYT--------GRPGVIAF  149 (447)
T ss_pred             HHHHHHHHHHhhcccCCcccchhHHHHHHHHHHhCCcccCCeEEecCCcHHHHHHHHHHHHHHh--------CCCcEEEE
Confidence            47999999999987776444 89999999999977   35789999999999999999999775        24889999


Q ss_pred             ccCCCCcccccccccCCcccc-ccCCCCCCCceeccCCC-----------------HHHHHHHHHh---cCCcEEEEEEc
Q 017259           77 CGCFHGRTLAAISMSCDNEAI-RGFGPLLPGHLKVDFGD-----------------ITALEKIFKE---SGDQIAGFLFE  135 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~---~~~~~~~vi~~  135 (374)
                      .++|||.+..+.++++....+ .++.+....+..+|+++                 .+.+++.+.+   .+.+++++++|
T Consensus       150 ~~afHG~T~galslT~~~~~~~~~~~~~~~~v~~~Pyp~~yr~p~~~~~~~~~~~~~~~~e~~i~~~~~~~~~vAaiI~E  229 (447)
T COG0160         150 DGAFHGRTLGALSLTGSKPPYKAGFGPLPPGVYHVPYPNPYRCPFGIGGEECGDDALEYIERALFDLEVGPEEVAAIIIE  229 (447)
T ss_pred             CCcccccchhhHHhccCccccccCCCCCCCCeEEecCCccccCcccCchhhhhHHHHHHHHHHHHhhcCCCCceeEEEEe
Confidence            999999999999998865554 56777767788877752                 2335555543   34679999999


Q ss_pred             cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      |+++.+|.+.++++|++++.++|++||+++|+||+|+||||+|+.|+++++++.||++++||++++|+ |+|.++.++++
T Consensus       230 pIQgegG~~v~p~~fl~~l~~~~~~~gillI~DEVQtG~GRTG~~fa~E~~gv~PDivt~aK~ig~G~-Pl~avv~r~ei  308 (447)
T COG0160         230 PIQGEGGIIVPPKGFLKALRKLCREHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLAKSLGGGL-PLSAVVGRAEI  308 (447)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCccccchhhhhcCCCCCEEEecccccCCC-ceeEEeccHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999999999 99999999999


Q ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-
Q 017259          216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-  294 (374)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-  294 (374)
                      ++ ..+..+..||.+|+++++++++.|+.++++++.++.++.+++++++|.++..++| .+.++++.|.|+++++.++. 
T Consensus       309 ~~-~~~g~~~~Tf~GNpva~Aaa~AvL~vie~e~L~~~a~~~G~~l~~~L~~l~~~~~-~IgdVRG~Glm~giE~v~d~~  386 (447)
T COG0160         309 MD-WPPGGHGGTFGGNPVACAAALAVLDVIEEENLLERAAELGEYLRDRLEELQEKHP-LIGDVRGLGLMIGVELVKDRD  386 (447)
T ss_pred             cc-cCCcccCCCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHhhcC-ceecccccceEEEEEEecCCC
Confidence            88 7777888999999999999999999999999999999999999999999999986 99999999999999995432 


Q ss_pred             ----CchhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 ----LPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ----~~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                          .......+++.|+++|+++..++  .+.|||.||++.+++++|++++.|.++++ ++
T Consensus       387 t~~p~~~~~~~i~~~~~~~Glil~~~G~~~nviRi~PPL~is~e~~d~~l~il~~al~-~~  446 (447)
T COG0160         387 TKEPDAELAAKIVARAFERGLLLLTCGPHGNVLRILPPLTISDEELDEGLDILEEALK-EA  446 (447)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCEEeccCCCCcEEEEeCCcccCHHHHHHHHHHHHHHHH-hh
Confidence                13457889999999999998876  89999999999999999999999999997 53

>COG0161 BioA Adenosylmethionine-8-amino-7-oxononanoate aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=1e-50  Score=370.73  Aligned_cols=343  Identities=35%  Similarity=0.588  Sum_probs=301.9

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+++|++++.|+.+ ...+.+..+|+++|++...   .++++|++|||+|++.|++++++|+ ..+| .+++.++|...
T Consensus        67 ~Ai~~Q~~~l~~~~~~~~t~~Pa~~LA~~L~~~aP~~~l~~vFf~~sGSeAvEtAlKma~qY~-~~~G-~p~r~~~Isr~  144 (449)
T COG0161          67 EAIKKQLDKLPHVMFGGFTHEPAIELAEKLAELAPEGGLDHVFFTDSGSEAVETALKMALQYW-RARG-QPQRKKFISRR  144 (449)
T ss_pred             HHHHHHHHhCCchhhcccCCchHHHHHHHHHHhCCCCCccEEEEeCCchHHHHHHHHHHHHHH-HhcC-CCcceEEEEec
Confidence            789999999998754 3567779999999999984   8899999999999999999999998 7788 45578899999


Q ss_pred             cCCCCcccccccccCCcccc-ccCCCCCCCceeccCCC-----------------HHHHHHHHHhcC-CcEEEEEEcccc
Q 017259           78 GCFHGRTLAAISMSCDNEAI-RGFGPLLPGHLKVDFGD-----------------ITALEKIFKESG-DQIAGFLFEPIQ  138 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~~~-~~~~~vi~~~~~  138 (374)
                      .+|||.+.++.++++..... ..+.+....+.+++.+.                 .+.||+.|.+++ ++++++|+||+.
T Consensus       145 ~gYHG~T~ga~Sv~g~~~~~~~~~~~ll~~~~~~~~P~~y~~~~~~~~~~~~~~~a~~le~~i~~~g~~~IAAfI~EPv~  224 (449)
T COG0161         145 NGYHGDTLGAMSVGGPVALRHAFYDPLLPEVLHLPAPYAYRRGFFGEGDEEFAEAADELEALILEHGPETIAAFIVEPVV  224 (449)
T ss_pred             cCcCcccchheeccCchhhhhhhccccccCceecCCCcccccCCCCCChHHHHHHHHHHHHHHHhcCcccEEEEEecccc
Confidence            99999999999999954444 55655555555544331                 567888888876 899999999987


Q ss_pred             CC-CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          139 GE-AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       139 ~~-~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      +. +|+++|++.+++++.++|++|||++|+||+.+||||+|+.|+.+++++.||+++++|+++||++|+|.++.++++.+
T Consensus       225 g~agG~~~pp~~Yl~~vr~iC~ky~ILlI~DEV~tGFGRTG~~FA~e~~gi~PDi~~~aKGLT~GY~Pl~a~l~~~~I~~  304 (449)
T COG0161         225 GGAGGMLVPPPGYLKRVREICDKYGILLIADEVATGFGRTGKMFACEHAGIVPDILCLAKGLTGGYLPLSAVLTSDRIYE  304 (449)
T ss_pred             cccCCcccCChHHHHHHHHHHHHcCcEEEeecceeCCCcCchhhhhhhcCCCCCeeeecccccccchhhHhHhhhHHHHH
Confidence            77 99999999999999999999999999999999999999999999999999999999999999999999999999998


Q ss_pred             hcCCC-----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259          218 CIQPG-----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK  292 (374)
Q Consensus       218 ~~~~~-----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  292 (374)
                      .+...     .|++||++|+++++++++.|++++++++.++.++...++.+.|+.+.... +.+.++++.|.+..+++..
T Consensus       305 ~~~~~~~~~f~HG~TYsghPlacAaAla~L~i~e~e~l~~~~~~~~~~l~~~L~~~l~~~-p~VgdVR~~Gli~~iElv~  383 (449)
T COG0161         305 AFSDGDAGAFMHGHTYSGNPLACAAALANLDILEEEDLLERVAEIGAYLQAGLQAALADH-PLVGDVRGLGLIGAIELVA  383 (449)
T ss_pred             HHhcccCCeeccCCccccCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhcccC-CcEEEeeccceEEEEEEec
Confidence            88764     68999999999999999999999999999999999999999999854444 4899999999999999955


Q ss_pred             CCCc------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          293 TALP------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       293 ~~~~------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +..+      .....+.+.+.++|++++|. ++.+-++||+.+|++|+++++++++++++ ..
T Consensus       384 d~~t~~~f~~~~~~~~~~~~~e~Gl~iRp~-g~~i~~~PPliit~~eid~l~~~l~~al~-~~  444 (449)
T COG0161         384 DKATKTPFEARVGARVRAAALERGLLIRPL-GDVIYLMPPLIITREEIDELVDALREALD-ET  444 (449)
T ss_pred             ccccccchhhhHHHHHHHHHHHCCeEEeec-CCEEEEcCCccCCHHHHHHHHHHHHHHHH-HH
Confidence            5421      12667888999999999999 67999999999999999999999999998 54

>PLN02624 ornithine-delta-aminotransferase

Probab=100.00  E-value=1.4e-50  Score=387.01  Aligned_cols=373  Identities=81%  Similarity=1.302  Sum_probs=319.9

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      ++|++++++++.+.++.+.++...+++++|+++++.++++|++||++|++.|+++++.+++.++|.+.++.+|+.+.++|
T Consensus        97 ~~ai~~ql~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~AlklAr~~~~~~~g~~~~~~~ii~~~~~y  176 (474)
T PLN02624         97 IKALTEQAEKLTLSSRAFYNDKFPEFAEYLTSMFGYDMVLPMNTGAEGVETAIKLARKWGYEKKGIPKNEAIIVSCCGCF  176 (474)
T ss_pred             HHHHHHHHHhcCCcccccCCHHHHHHHHHHHhhcCCCeEEEeCChHHHHHHHHHHHHHHHHhhcCCCCCCcEEEEECCCc
Confidence            37889999987776666778899999999999989899999999999999999999987545555444456899999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ||.+..+.++++.+.....|.|..+++..++++|++.+++.++.+++++++|++||+++++|.+.++++++++|.++|++
T Consensus       177 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~iaaiiiEpv~~~~G~v~p~~~~L~~l~~lc~~  256 (474)
T PLN02624        177 HGRTLAAISMSCDNEATRGFGPLLPGHLKVDFGDLDALEKIFEEDGDRIAAFLFEPIQGEAGVVIPPDGYLKAVRELCSK  256 (474)
T ss_pred             CCCCHHHhhcCCCccccccCCCCCCCceEeCCCCHHHHHHHHHhCCCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            99999999998887777778787778888999999999999987667899999999999999999999999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      ||+++|+||+|+|+++.|..+..+++++.||++++||++++|++|+|+++.+++++..+.+..++.||++++++++++.+
T Consensus       257 ~gillI~DEv~tG~GrtG~~~a~~~~~i~pDiv~lsK~lggG~~pigav~~~~~i~~~~~~~~~~~T~~g~pl~~aaa~a  336 (474)
T PLN02624        257 HNVLMIADEIQTGLARTGKMLACDWEEVRPDVVILGKALGGGVIPVSAVLADKDVMLCIKPGEHGSTFGGNPLASAVAMA  336 (474)
T ss_pred             cCCEEEEeccccCcCcCcchhhHHhcCCCCCEEEecccccCCCCcceeeeecHHHHhHhccCCcCCCCCCCHHHHHHHHH
Confidence            99999999999999999988887778899999999999998733999999999988888777778899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-chhHHHHHHHHHHCCeEeccCCCC
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHDT  319 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~~  319 (374)
                      +++.+.++++.++..++.+++++.|+.+...++..+...++.|.++.+.++.... .....++++.|.++||++.+.+.+
T Consensus       337 aLe~l~~~~l~~~~~~~~~~l~~~L~~l~~~~~~~i~~vrg~G~~~~i~l~~~~~~~~~a~~~~~~L~e~GV~v~p~~~~  416 (474)
T PLN02624        337 ALQVVQDEKLAERSAKLGQELRDQLQKIQKQFPKLIKEVRGRGLLNAVVLNSPKLGPVSAYDVCLKLKERGLLAKPTHDT  416 (474)
T ss_pred             HHHHHHhchHHHHHHHHHHHHHHHHHHHHHhCCCceEEEEeeEEEEEEEecCCCcChHHHHHHHHHHHhCCeEEecCCCC
Confidence            9999887788899999999999999998776654566678889999988854210 124678999999999999998889


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCC---CCCCccccccCC
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAP---ATPCHRCGRNLY  373 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~  373 (374)
                      ++||+|++.++++++++++++|+++++..+..+++..+...|   +++|.+|||++|
T Consensus       417 ~lR~~p~l~~t~e~id~~l~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  473 (474)
T PLN02624        417 IIRLAPPLSISEDELQECSKALSDVLEHDLPKLQSAKKEKTPKAAPTPCDRCGRNLY  473 (474)
T ss_pred             EEEEECCccCCHHHHHHHHHHHHHHHHHHHHHhHHhhhhhcCCCCCChhhhhhhhcc
Confidence            999999999999999999999999986334444443333332   669999999998

>KOG1402 consensus Ornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=5.8e-51  Score=347.99  Aligned_cols=344  Identities=62%  Similarity=1.018  Sum_probs=322.7

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      ++|+.++++++..++..+++....++++.+.++++++.++.+++|.||++.|++++|..+|..++.|.+..+|+...++|
T Consensus        81 ~~aLqeq~~kLtlssrafYnd~~~~f~~~vt~lf~~~kvlpmnTGaEa~Eta~KLaR~wgy~~K~ip~nka~il~~~~nF  160 (427)
T KOG1402|consen   81 IKALQEQADKLTLSSRAFYNDVLGEFAEYVTKLFGYDKVLPMNTGAEAVETACKLARKWGYRKKNIPKNKAKILSAENNF  160 (427)
T ss_pred             HHHHHHHHhHhhhhhHHHhhhhHHHHHHHHHHhcCcceeeecccchhHHHHHHHHHHHHHHhhccCCccceeEEEecccc
Confidence            36889999998888887889999999999999999999999999999999999999999999999888888999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCC-ceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      ||.+.++++++..+.-..+|.|..+. +..+||+|.++|+.+|++  ++++++++||+++..|.++|++.++++..++|+
T Consensus       161 hGrT~~ais~s~d~ds~~~fgp~~P~~~~~v~Y~d~eale~~l~~--~~vaaFivEPIQGEaGVvvP~~GYL~~vreLCt  238 (427)
T KOG1402|consen  161 HGRTLGAISLSTDPDSWDGFGPFLPGVVDKVPYGDAEALEVALKS--PNVAAFIVEPIQGEAGVVVPPPGYLKKVRELCT  238 (427)
T ss_pred             cCceeeeEEecCCcchhhccCCCCCCcceeeccCCHHHHHHHhcC--CCeeEEEeeccccccceEeCCchhHHHHHHHHH
Confidence            99999999999999888888888887 888999999999999996  689999999999999999999999999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      +|++++|.||+|+|++|+|+.++.++..+.||++.++|+++||++|+..++++++++-.+.+..|+.||.+|++++++++
T Consensus       239 kynvl~I~DEvQTGl~RTGk~la~d~env~PDivilgKalSGG~~Pvsavl~~~~im~~~~pgeHgsTyggNpLg~~vai  318 (427)
T KOG1402|consen  239 KYNVLLIADEVQTGLARTGKLLACDYENVRPDIVILGKALSGGVYPVSAVLADDDIMLNIKPGEHGSTYGGNPLGCAVAI  318 (427)
T ss_pred             hhcEEEEehhhhhcccccCcEEEeehhhcCCCeEEEeccccCCeeeeEEEEecHHHHhccCCCccccccCCChHHHHHHH
Confidence            99999999999999999999999999999999999999999998899999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-chhHHHHHHHHHHCCeEeccCCC
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-PVSAYDICLKMKERGILAKPTHD  318 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~~~~  318 (374)
                      ++|+.+.++++.++....+..++.+|.++...+|.++..++++|.+..+.+..... +.++-++|=.|.++|++..|.++
T Consensus       319 Aalevi~eekL~era~~lG~~l~~~L~~l~~~~p~~v~~VRGrGl~~ai~i~~~~~~~~~aw~~cl~lk~~g~LAkptH~  398 (427)
T KOG1402|consen  319 AALEVIVEEKLVERAAKLGEILRDQLNKLQKKFPHVVKEVRGRGLLNAIVINPSKTSGQDAWDVCLALKENGLLAKPTHG  398 (427)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccchhheeeccceEEEEEeccccccchhHHHHHHcccccccccCCCCC
Confidence            99999999999999999999999999999988888899999999999998854332 35677888889999999999999


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.||++||+.++++|+++.++++.+.+.
T Consensus       399 ~IiRfaPPL~I~e~dl~eg~e~i~k~i~  426 (427)
T KOG1402|consen  399 NIIRFAPPLVISEEDLREGIEAIEKTIA  426 (427)
T ss_pred             CeEEecCCcccCHHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988764

>TIGR03372 putres_am_tran putrescine aminotransferase

Probab=100.00  E-value=6.7e-48  Score=363.21  Aligned_cols=337  Identities=37%  Similarity=0.668  Sum_probs=297.2

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      ++|+.++++++.+.+..+.++...+++++|++..  +.++++|++|||||++.|+++++.++ .++|    +.+|+.+.+
T Consensus        97 ~~Av~~ql~~l~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t-~~~g----r~~ii~~~~  171 (442)
T TIGR03372        97 IAAVENQLAKQPLHSQELLDPLRALLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ-SPRG----KFTFIAASG  171 (442)
T ss_pred             HHHHHHHHHhCCCcccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHH-hhcC----CcEEEEECC
Confidence            3688999998877666667889999999999987  34789999999999999999998764 2223    478999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +|||.+..+.++++.+.++..+.|..+++..+|++|.+++++.+++   ++++++++++||+++.+|.+.++++++++|.
T Consensus       172 ~yHG~t~~~ls~t~~~~~~~~~~p~~~~~~~~p~~d~~~~~~~l~~~~~~~~~vAavIvEpv~g~gG~~~p~~~yl~~l~  251 (442)
T TIGR03372       172 AFHGKSLGALSATAKPAFRKPFMPLLPGFHHVAFGDIEAMLKALNECKKTGDDVAAIILEPIQGEGGVILPPEGYLPAVR  251 (442)
T ss_pred             CccCCCHHHhhccCCcccCCCCCCCCCCCEEeCCCCHHHHHHHHHHHhcCCCcEEEEEEeCccCCCCcccCCHHHHHHHH
Confidence            9999999999998877777778887778899999999998888864   4568999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC--CCCCCCCCCCCHH
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ--PGEHGSTFGGNPL  233 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~  233 (374)
                      ++|++||+++|+||+++||||+|..|+++++++.||++++||++++|++|+|.+++++++++.+.  +..++.||+++++
T Consensus       252 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lg~G~~Pigavv~~~~i~~~~~~~~~~~~~T~~gnp~  331 (442)
T TIGR03372       252 ALCDEFGALLILDEVQTGMGRTGKMFACEHEGVQPDILCLAKALGGGVMPIGATIATEAVFSVLFDNPFLHTTTFGGNPL  331 (442)
T ss_pred             HHHHHcCCEEEEeecccCCCccccchhhhhcCCCCCeeeehhhhcCCcccceEEEecHHHHHhhhccCccccCCCCCCHH
Confidence            99999999999999999999999999999999999999999999999449999999999988873  3357889999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      +++++.++|+.++++++.++.+++++++++.|+++...+|..+.++++.|.++.+++.++.   ....+++.|+++||++
T Consensus       332 ~~Aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~~~~~~i~~vRG~Gl~~giel~~~~---~~~~i~~~l~~~Gvl~  408 (442)
T TIGR03372       332 ACAAALATINELLEKNLPAQAAIKGDFLLDGFQQLAAEYPDLIIEARGKGLLMAIEFRDNE---IGYAFAKELFQQNILV  408 (442)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCCCceEEEecceEEEEEEeCChH---HHHHHHHHHHHCCcEE
Confidence            9999999999998889999999999999999999987775467888999999999996543   5678999999999999


Q ss_pred             ccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          314 KPT--HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       314 ~~~--~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .+.  ..+.+||.|++.+|++|+++++++|++++
T Consensus       409 ~~~~~~~~~lr~~Ppl~~t~~~id~~~~~l~~~~  442 (442)
T TIGR03372       409 AGTLNNAKSIRIEPPLTITIEQCALVIKAAKDAL  442 (442)
T ss_pred             eecCCCCCEEEEECCcccCHHHHHHHHHHHHHhC
Confidence            764  35799999999999999999999998763

Members of this family are putrescine aminotransferase, as found in Escherichia coli, Erwinia carotovora subsp. atroseptica, and closely related species. This pyridoxal phosphate enzyme, as characterized in E. coli, can act also on cadaverine and, more weakly, spermidine.

>PRK11522 putrescine--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=1.4e-47  Score=363.60  Aligned_cols=341  Identities=36%  Similarity=0.676  Sum_probs=300.9

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      ++|+.++++++.+.+..+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ -.+|    +.+|+.+.+
T Consensus       104 ~~Ai~~ql~~l~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t-~~~g----r~~ii~~~~  178 (459)
T PRK11522        104 VSAVQNQLAKQPLHSQELLDPLRAMLAKTLAALTPGKLKYSFFCNSGTESVEAALKLAKAYQ-SPRG----KFTFIATSG  178 (459)
T ss_pred             HHHHHHHHhhCcccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCchHHHHHHHHHHHHHh-ccCC----CcEEEEecC
Confidence            3688999998877666677889999999999976  35789999999999999999999764 1222    478999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +|||.+..+.++++.+.++..+.|..+++..+|++|.+++++.+++   ++++++++++||+++.+|.+.+++++++++.
T Consensus       179 ~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~iAavIvEpv~g~~G~~~pp~~yl~~lr  258 (459)
T PRK11522        179 AFHGKSLGALSATAKSTFRKPFMPLLPGFRHVPFGNIEAMRTALSECKKTGDDVAAVILEPIQGEGGVILPPEGYLTAVR  258 (459)
T ss_pred             CCCCCcHHHhhhcCCcccccCCCCCCCCCcccCCCCHHHHHHHHHHhhccCCcEEEEEEecccCCCCCccCCHHHHHHHH
Confidence            9999999999988887777778887778889999999999998864   3467999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC--CCCCCCCCCCCHH
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ--PGEHGSTFGGNPL  233 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~  233 (374)
                      ++|++||+++|+||+++|||++|..|+++++++.||++++||++++|++|+|++++++++++.+.  +..++.||+++++
T Consensus       259 ~lc~~~g~llI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggG~~Pigav~~~~~i~~~~~~~~~~~~~T~~gnp~  338 (459)
T PRK11522        259 KLCDEFGALLILDEVQTGMGRTGKMFACEHENVQPDILCLAKALGGGVMPIGATIATEEVFSVLFDNPFLHTTTFGGNPL  338 (459)
T ss_pred             HHHHHcCCEEEeccceecCCccchhhhhhccCCCCCEEEechhhhCCCccceeEEEcHHHHHHhccCCcccCCCCCCCHH
Confidence            99999999999999999999999998999999999999999999999449999999999888774  3357889999999


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      ++++++++++.++++++.++++++.+++++.|+++...+|..+.++++.|.++.+++.+..   ....+++.|+++||++
T Consensus       339 ~~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~VrG~Gl~~giel~~~~---~~~~i~~~l~~~Gvl~  415 (459)
T PRK11522        339 ACAAALATINVLLEQNLPAQAEQKGDYLLDGFRQLAREYPDLVQEARGKGMLMAIEFVDNE---IGYNFASEMFRQRVLV  415 (459)
T ss_pred             HHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEeceeEEEEEecCch---HHHHHHHHHHHCCeEE
Confidence            9999999999998889999999999999999999887765467889999999999996543   4678999999999999


Q ss_pred             ccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          314 KPT--HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       314 ~~~--~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .+.  ..+.+|+.|++.++++|+++++++|.++++ ++.
T Consensus       416 ~~~~~~~~~lr~~Ppl~~t~~~id~~l~~l~~~l~-~~~  453 (459)
T PRK11522        416 AGTLNNAKTIRIEPPLTLTIEQCEQVLKAARKALA-AMR  453 (459)
T ss_pred             EecCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH-HHH
Confidence            765  468999999999999999999999999987 553

>TIGR03246 arg_catab_astC succinylornithine transaminase family

Probab=100.00  E-value=1.2e-46  Score=354.58  Aligned_cols=337  Identities=35%  Similarity=0.551  Sum_probs=294.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+....++++...+|+++|+++.+.++++|++||++|++.|+++++.++.. ++ .+++++|+.++.+||
T Consensus        58 ~a~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~f~~SGseA~e~Alk~ar~~~~~-~~-~~~r~~ii~~~~~yH  135 (397)
T TIGR03246        58 KALIEQADKLWHIGNGYTNEPVLRLAKKLVDATFADKVFFCNSGAEANEAALKLARRYALD-KH-GADKSEIVAFKNSFH  135 (397)
T ss_pred             HHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHh-cC-CCCCCEEEEECCCcC
Confidence            6788888886655555668889999999999888899999999999999999999877422 22 134689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.+...+.|...++..++++|++++++.+.   +++++|++||+++++|.+.++++++++|.++|++|
T Consensus       136 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epi~~~~G~~~~~~~~l~~l~~lc~~~  212 (397)
T TIGR03246       136 GRTLFTVSVGGQPKYSQGFAPLPGGIKHAPYNDLAAAKALIS---DKTCAVIVEPIQGEGGVVPADPAFLKGLRELCDRH  212 (397)
T ss_pred             CccHHHHHhcCCcccccCCCCCCCceEEeCCCCHHHHHHHhc---cCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            999888888877667777777777788899999999999986   57999999999999998888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|++++|..++...+++.||++++||++++|+ |+|++++++++++.+....++.+|++++++++++.++
T Consensus       213 g~llI~DEv~tG~Gr~G~~~a~~~~gv~pDi~t~~K~lggG~-pigav~~~~~i~~~~~~~~~~~t~~~~p~~~aaa~a~  291 (397)
T TIGR03246       213 NALLIFDEVQTGVGRTGELYAYMHYGVTPDILTSAKALGGGF-PIGAMLTTTEIAAHLKVGTHGTTYGGNPLACAVAGKV  291 (397)
T ss_pred             CCEEEEechhhcCCccccchhhhhcCCCCCEEEeehhhhCCc-ceeEEEEcHHHHHhccCCCcCCCCCCCHHHHHHHHHH
Confidence            999999999999999999888788899999999999999998 9999999999999988766778999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.++++++.++++++.+++++.|+++...+ +.+..+++.|.++.+.+.+.. ......+++.|+++|+++.+.+.+++
T Consensus       292 l~~~~~~~l~~~~~~~~~~l~~~L~~l~~~~-~~~~~vrg~G~~~~i~~~~~~-~~~~~~~~~~l~~~Gv~~~~~g~~~l  369 (397)
T TIGR03246       292 LDLVNTPELLAGVKQRHDLFVDGLEKINARY-NVFSEIRGKGLLIGAVLTEAY-QGKAKQFVNAAAEEGVIALIAGPNVV  369 (397)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHhcC-CCeEeeecCceEEEEEEcCch-hhHHHHHHHHHHHCCeEEeecCCCEE
Confidence            9998777899999999999999999987655 366678888999988875321 01467899999999999988767899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++|++.++++++++++++|+++++
T Consensus       370 R~~p~~~~t~~~i~~~~~~l~~~l~  394 (397)
T TIGR03246       370 RFAPSLVISDDDIDEGLARFERAIE  394 (397)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987

Members of the seed alignment for this protein family are the enzyme succinylornithine transaminase (EC 2.6.1.81), which catalyzes the third of five steps in arginine succinyltransferase (AST) pathway, an ammonia-releasing pathway of arginine degradation. All seed alignment sequences are found within arginine succinyltransferase operons, and all proteins that score above 820.0 bits should function as succinylornithine transaminase. However, a number of sequences extremely closely related in sequence, found in different genomic contexts, are likely to act in different biological processes and may act on different substrates. This model is desigated subfamily rather than equivalog, pending further consideration, for this reason.

>PRK05965 hypothetical protein; Provisional

Probab=100.00  E-value=8.5e-47  Score=359.31  Aligned_cols=344  Identities=28%  Similarity=0.451  Sum_probs=290.2

Q ss_pred             ChHHHHHHHhccccCc--CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|+.++++++.+..+  .+.++...+|+++|++..  +.++++|++|||+|++.|+++++.|+. .+| .+++.+|+.+
T Consensus        68 ~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~~-~~g-~~~r~kii~~  145 (459)
T PRK05965         68 VEAAAEQMRELPYATGYFHFGSEPAIRLAAKLAERAPGSLNHVYFTLGGSDAVDSAVRFIRHYWN-ATG-RPSKKQFISL  145 (459)
T ss_pred             HHHHHHHHHhcCCcccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCChhHHHHHHHHHHHHHHH-hcC-CCCccEEEEe
Confidence            3688999988776554  356888899999999987  567999999999999999999998752 234 3456899999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccC---------CC--------HHHHHHHHHhcC-CcEEEEEEcccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---------GD--------ITALEKIFKESG-DQIAGFLFEPIQ  138 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~d--------~~~le~~l~~~~-~~~~~vi~~~~~  138 (374)
                      .++|||.+..+.++++.+.++..+.+....+..+++         +|        ++++++.+..++ +++++|++||++
T Consensus       146 ~~~YHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAAvIvEPiq  225 (459)
T PRK05965        146 ERGYHGSSSVGAGLTALPAFHRGFDLPLPWQHKIPSPYPYRNPVGDDPQAIIAASVAALRAKVAELGADNVAAFFCEPIQ  225 (459)
T ss_pred             cCCcCcccHHHHHhcCCchhhcccCCCCCCCEEcCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccc
Confidence            999999998888887766666555544333333322         23        256788787554 689999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +.+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.
T Consensus       226 g~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~~  305 (459)
T PRK05965        226 GSGGVIVPPKGWLKAMREACRELGILFVADEVITGFGRTGPLFACEAEGVVPDLMTVAKGLTSGYVPMGAVLMSDHVYQG  305 (459)
T ss_pred             cCCCCccCCHHHHHHHHHHHHHcCCEEEEechhccCccCchhhhHhhcCCCCCeEEechhhccCCcceeEEEEcHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999995599999999999887


Q ss_pred             cCC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259          219 IQP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       219 ~~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  291 (374)
                      +..       ..+++||+++++++++++++++.++++++.++.++..+++.+.|+++. .+ +.+.++++.|.++.+++.
T Consensus       306 ~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~-~~-~~v~~vrG~Gl~~gie~~  383 (459)
T PRK05965        306 IADGAGAAAPVGHGYTYSAHPVSAAVGLEVLRLYHEGGLLANGQKAGPRFAAGLDALR-AH-PLVGDVRGRGLLGALELV  383 (459)
T ss_pred             HhccccccccccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cC-CCEEEEeecceEEEEEEe
Confidence            753       247789999999999999999999999999999999999999999875 45 478899999999999984


Q ss_pred             cCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          292 KTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       292 ~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+..        ......+.+.++++|+++.+.+.+.+|+.|+++++++|+++++++|.++++ ++
T Consensus       384 ~~~~~~~~~~~~~~~~~~i~~~~~~~Gll~~~~g~~~i~~~PpL~it~~ei~~~~~~l~~~l~-~~  448 (459)
T PRK05965        384 ADKATKTPFDAALDPADRIFDRAYANGLVFRAFGDGVLGFAPALCCTEGEFDLIFERTRKTLD-DV  448 (459)
T ss_pred             ccccccCCCCchhHHHHHHHHHHHhCCeEEEecCCcEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence            3210        012467888899999999987778899999999999999999999999998 65

>PRK01278 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=353.63  Aligned_cols=334  Identities=40%  Similarity=0.663  Sum_probs=292.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|++++++++.+.+..+.++...+++++|++..+.+++++++||++|++.|+++++.+. ..+| +.++++|++++++||
T Consensus        54 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~~~al~~ar~~~-~~~G-~~~r~~vi~~~~~yh  131 (389)
T PRK01278         54 EALKEQAEKLWHVSNLYRIPEQERLAERLVENSFADKVFFTNSGAEAVECAIKTARRYH-YGKG-HPERYRIITFEGAFH  131 (389)
T ss_pred             HHHHHHHHhcCccccccCChHHHHHHHHHHhhCCCCEEEEcCCcHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECCCcC
Confidence            68888988877666666788899999999998888899999999999999999998764 4455 345579999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+...++.+.+...+.+...++..++++|++++++.++   +++++++++|+++++|...++++++++|.++|++|
T Consensus       132 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~avivep~~~~~G~~~~~~~~l~~l~~l~~~~  208 (389)
T PRK01278        132 GRTLATIAAGGQEKYLEGFGPLVPGFDQVPFGDIEALKAAIT---PNTAAILIEPIQGEGGIRPAPDEFLKGLRQLCDEN  208 (389)
T ss_pred             CCcHHHHhccCChhhcccCCCCCCCceEeCCCCHHHHHHhhC---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            999999888877766666666556677788889999999986   48999999999998887888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+++.|..+....+++.||++++||++++|+ |+||+++++++++.+....+..+|++++++++++.++
T Consensus       209 g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  287 (389)
T PRK01278        209 GLLLIFDEVQCGMGRTGKLFAHEWAGVTPDIMAVAKGIGGGF-PLGACLATEEAAKGMTPGTHGSTYGGNPLAMAVGNAV  287 (389)
T ss_pred             CCEEEEeccccCCCcCCcceeecccCCCCCEEEEehhccCCc-ceEEEEEcHHHHhccCCCCCCCCCCccHHHHHHHHHH
Confidence            999999999999999888777667788999999999999998 9999999999999888777888999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+.++++.++++++.++++++|+.+...+|.++...++.|.++++.+..     +..++++.|+++||.+.|.+.+++
T Consensus       288 l~~l~~~~~~~~~~~~~~~l~~~l~~l~~~~~~~~~~v~g~G~~~~i~~~~-----~~~~~~~~l~~~GV~~~p~~~~~l  362 (389)
T PRK01278        288 LDVILAPGFLDNVQRMGLYLKQKLEGLVDRFPDVIEEVRGKGLLLGLKCVV-----PNRDLVQALRDEGLLTVGAGDNVV  362 (389)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHhhCCCceeeEecccEEEEEEEec-----CHHHHHHHHHHCCeEEeecCCCEE
Confidence            999877778899999999999999988665543566778888999987753     467899999999999999878999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ||+|++..+++++++++++|+++++
T Consensus       363 R~~p~~~~~~~~i~~~l~~l~~~l~  387 (389)
T PRK01278        363 RLLPPLIITEEEIDEALERLERAAE  387 (389)
T ss_pred             EEeCCcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887

>PRK04612 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=1.7e-46  Score=352.40  Aligned_cols=342  Identities=38%  Similarity=0.589  Sum_probs=299.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+..+.+.++...+++++|++.. +.++++|++||++|++.|+++++.++ ..+|.++++.+|+.+.++|
T Consensus        63 ~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~v~f~~sGseA~e~AlklAr~~~-~~~g~~~~r~~ii~~~~~y  141 (408)
T PRK04612         63 AALTEQAGKLWHTSNVFYSAPPLKLAEELVTASRFAEKVFLCNSGTEANEAAIKLVRKWA-SSQGRPADKRVIVTFRGSF  141 (408)
T ss_pred             HHHHHHHHhccccccccCCHHHHHHHHHHHhhCCCCCEEEEcCchHHHHHHHHHHHHHHH-HhhCCCCCCcEEEEECCCc
Confidence            688899988877665566888899999999976 34799999999999999999999875 2345445567899999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ||.+..+.+.++.+.++.++.+...++..++++|++.+++.+.  ++++++++++|.++++|.+.++++++++|.++|++
T Consensus       142 HG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~--~~~~aavi~eP~~~~gg~~~~~~~~l~~l~~l~~~  219 (408)
T PRK04612        142 HGRTLAAVTATAQPKYQEGYEPLPGGFRYVDFNDVEALEAAMA--GGDVAAVMLEPIQGEGGVMPAAPGFLARVRALCDQ  219 (408)
T ss_pred             CCccHHHHHhcCCcccccCCCCCCCCceEcCCCCHHHHHHhhC--CCCEEEEEECCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            9999999988888777777777766778889999999999885  35899999999999888888889999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      ||+++|+||+|+|++++|..+....+++.||+.++||++++|+ |+|++++++++.+.+....+..+|++++++++++.+
T Consensus       220 ~g~llI~DEv~tg~gr~G~~~a~~~~~~~pdi~t~~K~l~~G~-piga~~~~~~~~~~~~~~~~~~t~~~~p~~~aaa~a  298 (408)
T PRK04612        220 HDALLVLDEIQCGMGRTGTLFAHWQEQVTPDIVTLAKALGGGF-PIGAMLAGPKVAETMQFGAHGTTFGGNPLAAAVARV  298 (408)
T ss_pred             cCCEEEEeccccCCCcCCchhhhhhcCCCCCEEEEcchhcCCC-ceEEEEECHHHHhhhcCCCcCCCCCCCHHHHHHHHH
Confidence            9999999999999999998777666788999999999999998 999999999888888776778899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.++++++.++++++.+++++.|+++...+ +.+.++++.|.++.+++.... .....++.+.|.++|+++.+.+.+.
T Consensus       299 ~L~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~-~~i~~vrg~Gl~~~i~~~~~~-~~~a~~i~~~l~~~Gvlv~~~g~~~  376 (408)
T PRK04612        299 ALRKLASPQIAANVARQSAALRAGLEALNAEF-GVFAQVRGRGLMLGAVLAPAH-AGQAGAILDLAAEHGLLLLQAGPDV  376 (408)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC-CCeeeeeccceEEEEEecCch-hhHHHHHHHHHHHCCeEEeeCCCCE
Confidence            99999888999999999999999999988777 488889999999999985321 0146789999999999999887799


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      +|+.|++..+++|+++++++|+++++ ++.
T Consensus       377 lRl~Ppl~it~eeid~~l~~l~~~l~-~~~  405 (408)
T PRK04612        377 LRFVPALNLTDAELADGLARLRLALA-DYV  405 (408)
T ss_pred             EEEcCCccCCHHHHHHHHHHHHHHHH-HHh
Confidence            99999999999999999999999998 653

>PRK07482 hypothetical protein; Provisional

Probab=100.00  E-value=2.9e-46  Score=355.86  Aligned_cols=345  Identities=27%  Similarity=0.432  Sum_probs=291.4

Q ss_pred             ChHHHHHHHhccccCc--CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|++++++++.+...  .+.++...+++++|++..  +.++++|++|||+|++.|+++++.+. ..+| ..++.+|+.+
T Consensus        72 ~~Av~~q~~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGSEAve~AlKlAr~~~-~~~g-~~~r~~Ii~~  149 (461)
T PRK07482         72 AEAIAEQAKELAYYHTYVGHGTEASITLSKRIIDRAPAGMSKVYYGLSGSDANETQIKLVWYYN-NVLG-RPEKKKIISR  149 (461)
T ss_pred             HHHHHHHHHhcCccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCceEEEe
Confidence            3689999999865432  466889999999999977  46899999999999999999998764 2234 3346899999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCC------------------CHHHHHHHHHh-cCCcEEEEEEccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG------------------DITALEKIFKE-SGDQIAGFLFEPI  137 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l~~-~~~~~~~vi~~~~  137 (374)
                      .++|||.+..+.++++.+.++..+.|....+..++++                  +++++++.+.+ .++++++|++||+
T Consensus       150 ~~~YHG~t~ga~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPv  229 (461)
T PRK07482        150 WRGYHGSGVVTGSLTGLSLFHQHFDLPIARVLHTEAPHYYRRADAGMSEEQFSAYCADELEELILAEGPDTIAAFIAEPV  229 (461)
T ss_pred             cCccCCccHhhhhccCCchhhhccCCCCCCCEEcCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEECCc
Confidence            9999999999888888776666666655544443322                  25677887754 3467999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      ++.+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++
T Consensus       230 qg~gG~~~~~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~  309 (461)
T PRK07482        230 LGTGGIVPPPAGYWPAIQAVLKKYDILLIADEVVTGFGRLGSMFGSDHYGIEPDLITVAKGLTSAYAPLSGSIVGEKVWD  309 (461)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCcchhhHHhcCCCCCEEEEccccccCccccceeeecHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999659999999999887


Q ss_pred             hcCC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          218 CIQP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       218 ~~~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      .+..       ..+++||++|+++++++.++++.++++++.++.++..+++.+.|+++...+ +.+.++++.|.++.+++
T Consensus       310 ~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~v~~vrG~Glm~giel  388 (461)
T PRK07482        310 VLEQGSDEHGAIGHGWTYSGHPICAAAALANLDILERENLVGNAAEVGAYFRARLRAAFGDH-PLVGEVRGVGMLAAVEF  388 (461)
T ss_pred             HHhcccccCCccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEeeceeEEEEEe
Confidence            7652       247789999999999999999999988999999999999999999988777 48889999999999999


Q ss_pred             ccCCC-c-------hhHHHHHHHHHHCCeEeccC-CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          291 DKTAL-P-------VSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       291 ~~~~~-~-------~~~~~~~~~l~~~Gi~v~~~-~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..+.. .       .....+...|+++|+++.+. .++.+|+.|++.+|++|+++++++|+++++ .+
T Consensus       389 ~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~~~~~~i~~~Ppl~it~~ei~~~~~~l~~~l~-~~  455 (461)
T PRK07482        389 VADRDDRTPFDPALKIGPQVSAAALERGVIARAMPHGDILGFAPPLVLTRAEADEIVAIAKDAVD-EV  455 (461)
T ss_pred             ccCCCcCCCCChhhHHHHHHHHHHHHCCcEEecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            53211 0       12467889999999998654 368999999999999999999999999997 54

>PLN00144 acetylornithine transaminase

Probab=100.00  E-value=2.8e-46  Score=349.23  Aligned_cols=337  Identities=36%  Similarity=0.562  Sum_probs=296.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCC------ccEEEE
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID------EAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~------~~~vi~   75 (374)
                      +|++++++++.+....+.++...+++++|++..+.++++|++|||+|++.|+++++.++ .++|.+.+      +.+|+.
T Consensus        38 ~ai~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~sGseA~e~AlklAr~~~-~~~~~~~~~~~~~~r~~ii~  116 (382)
T PLN00144         38 KAVAEQAGTLAHVSNVYHTIPQVELAKRLVASSFADRVFFCNSGTEANEAAIKFARKYQ-RVRAPDKKDPAASSATEFVS  116 (382)
T ss_pred             HHHHHHHHhcCCccccccCHHHHHHHHHHHhcCCCCeEEEeCCcHHHHHHHHHHHHHHH-hccCCCCccccccccceEEE
Confidence            68899999887766656688899999999998778899999999999999999998775 22221111      478999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +.++|||.+..+.++++.+.++..+.|..+++.+++++|++.+++.+..  +++++++++|+++++|...++++++++|.
T Consensus       117 ~~~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~~--~~~aavi~eP~q~~gg~~~~~~~~~~~l~  194 (382)
T PLN00144        117 FSNSFHGRTLGALALTSKEQYRTPFEPLMPGVTFVEYGNLEAARKLIQK--GKTAAVFVEPVQGEGGIYPATKEFLQGLR  194 (382)
T ss_pred             ECCCcccccHHHHhcCCCccccccCCCCCCCeEEeCCCCHHHHHHhcCC--CCeEEEEEccccCCCCCccCCHHHHHHHH
Confidence            9999999999999988877777777777778889999999999988853  57999999999999888888999999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHH
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLAS  235 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (374)
                      ++|++||+++|+||+|+||++.|.+++.+.+++.||+++|||++++|+ |+|++++++++++.+....+..||+++++++
T Consensus       195 ~l~~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~PDi~t~sK~l~~G~-pig~v~~~~~~~~~~~~~~~~~T~~~~pl~~  273 (382)
T PLN00144        195 ALCDEAGALLVFDEVQCGLGRTGYLWAHEAYGVEPDIMTLAKPLAGGL-PIGAVLVTEKVASAINPGDHGSTFAGGPLVC  273 (382)
T ss_pred             HHHHHcCCEEEEechhhCCCccchHhhhhhcCCCCCEEEecccccCCc-ceEEEEEcHHHHhccCCCCCCCCCCCCHHHH
Confidence            999999999999999999999998777778899999999999999998 9999999999999998777888999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      +++.++++.++++++.+++++.++++++.|+++...+| .+..+++.|.++|++++.     ....+++.++++||.+.+
T Consensus       274 aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~~~~vrg~G~~~~l~l~~-----~~~~~~~~~~~~Gv~i~~  347 (382)
T PLN00144        274 NAALAVLDKISKPGFLASVAKKGEYLRELLRRKLGGNP-HVKEVRGVGLLVGIQLDV-----PAGPLVDACRDSGLLVLT  347 (382)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHHHHHHHHHHhhCC-CceeeecCceEEEEEecC-----ccHHHHHHHHHCCeEEee
Confidence            99999999998889999999999999999998877664 566778899999999842     457899999999999988


Q ss_pred             CC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 TH-DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .. .+.+|++|++..+++++++++++|.+++. ++
T Consensus       348 ~~~~~~lrl~p~~~~~~~~i~~~~~~l~~~l~-~~  381 (382)
T PLN00144        348 AGKGDVVRLVPPLVISEAELEQAVEILADCLP-AL  381 (382)
T ss_pred             cCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-hc
Confidence            64 58999999999999999999999999987 53

>PRK07678 aminotransferase; Validated

Probab=100.00  E-value=3.5e-46  Score=354.71  Aligned_cols=344  Identities=30%  Similarity=0.511  Sum_probs=289.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+....+.++...+++++|++.. +.++++|++||++|++.|+++++.++ ..+| .+++.+|+.+.++|
T Consensus        70 ~ai~~q~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~v~f~~sGseA~e~AlklAr~~t-~~~g-~~~r~~ii~~~~~y  147 (451)
T PRK07678         70 EAAYEQLKTLSYFPLTQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYH-AQKG-EPHRYKFISRYRAY  147 (451)
T ss_pred             HHHHHHHHhcCccccccCCHHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECCCc
Confidence            688899998877655567888999999999987 34589999999999999999999875 2234 44568999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHH-hcCCcEEEEEEccccCCCC
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFK-ESGDQIAGFLFEPIQGEAG  142 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~-~~~~~~~~vi~~~~~~~~g  142 (374)
                      ||.+..+.++++.+.++..+.|..+++..+++++                 ++.+++.++ .+++++++|++||+++.+|
T Consensus       148 HG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvi~EPiqg~gG  227 (451)
T PRK07678        148 HGNSMGALAATGQAQRKYKYEPLAPGFLHVPPPDCYRMPGIESEDIYDLECVKEIDRVMTWELSETIAAVIMEPIITGGG  227 (451)
T ss_pred             CCccHHHhhcCCCcccccccCCCCCCCEEeCCCccccccccCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccCCCC
Confidence            9999999988877666666666555555444321                 223566675 3457899999999999999


Q ss_pred             cccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC-
Q 017259          143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-  221 (374)
Q Consensus       143 ~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~-  221 (374)
                      .+.++++++++|.++|++||+++|+||+++||||+|..|.++.+++.||+++++|+++||++|+|.+++++++++.+.. 
T Consensus       228 ~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~gv~PDivt~gK~lggG~~Pi~av~~~~~i~~~~~~~  307 (451)
T PRK07678        228 VLMPPQDYMKAVKEICQKHGALLISDEVICGFGRTGKAFGFMNYGVKPDIITMAKGITSAYLPLSATAVKKEIYEAFKGK  307 (451)
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEeehhhcCCcCchhHHHHhcCCCCCEEEeecccccCCcceeEEEEcHHHHHHHhcc
Confidence            9999999999999999999999999999999999999888888999999999999999984499999999999888764 


Q ss_pred             -----CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-
Q 017259          222 -----GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-  295 (374)
Q Consensus       222 -----~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  295 (374)
                           ..++.||++++++++++.++++.++++++.++++++.+++++.|+++...+ +.+.++++.|.++.+++..+.. 
T Consensus       308 ~~~~~~~h~~T~~gnp~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~~~~~~-~~v~~vrg~Gl~~~i~~~~~~~~  386 (451)
T PRK07678        308 GEYEHFRHVNTFGGNPAACALALKNLEIMENENLIERSAQLGELLLEQLKEELGEH-PLVGDIRGKGLLVGIELVNDKET  386 (451)
T ss_pred             CcccccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhcC-CCEEEEEeeceEEEEEEecCCcc
Confidence                 247889999999999999999999888999999999999999998877666 4788899999999999843210 


Q ss_pred             -----chhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 -----PVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 -----~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                           ......+...|+++|+++.+.+      .+.+|++|++.+|++|+++++++|.++++ ++
T Consensus       387 ~~~~~~~~a~~i~~~l~~~Gv~~~~~g~~v~~~~~~lrl~Ppl~it~~eid~~~~~l~~~l~-~~  450 (451)
T PRK07678        387 KEPADNDKVASVVAACKEKGLIIGKNGDTVAGYNNVLTLSPPLVISSEEIAFIVGTLKTALE-RI  450 (451)
T ss_pred             cCcCchHHHHHHHHHHHHCCcEEeecCccccCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH-hc
Confidence                 1135678899999999997642      37899999999999999999999999997 54

>PRK12381 bifunctional succinylornithine transaminase/acetylornithine transaminase; Provisional

Probab=100.00  E-value=4.7e-46  Score=351.48  Aligned_cols=342  Identities=32%  Similarity=0.504  Sum_probs=296.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++.++.+....+.++...+++++|++..+.++++|++||++|++.|+++++.++. .++ ..++.+|+.++++||
T Consensus        62 ~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~sGseA~e~Alk~ar~~~~-~~~-~~~r~~ii~~~~~yH  139 (406)
T PRK12381         62 EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKYAH-DRY-GSHKSGIVAFKNAFH  139 (406)
T ss_pred             HHHHHHHhhcccccCccCCHHHHHHHHHHHhhCCCCeEEEcCCcHHHHHHHHHHHHHHHh-hcC-CCCCCeEEEECCCcC
Confidence            688888888766555566888999999999988889999999999999999999987642 222 124589999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.++..+.+...++..++++|++++++.+.   ++++++++||+++.+|.+.++++++++|.++|++|
T Consensus       140 G~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~aaviiEPv~~~gg~~~~~~~~l~~l~~l~~~~  216 (406)
T PRK12381        140 GRTLFTVSAGGQPKYSQDFAPLPPDIRHAAYNDLNSASALID---DQTCAVIVEPIQGEGGVIPADKAFLQGLRELCDRH  216 (406)
T ss_pred             CcchhHHhhcCCcccccCCCCCCCCeeEeCCCCHHHHHHhcc---CCeeEEEEeCCcCCCCCcCCCHHHHHHHHHHHHHc
Confidence            999988888887777777777777788889999999999886   57999999999988898888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+++.|..++...+++.||++++||++++|+ |+|++++++++++.+....+..+|++++++++++.++
T Consensus       217 ~~llI~DEv~tG~gr~G~~~~~~~~~v~pDi~t~sK~l~gG~-~ig~~~~~~~~~~~~~~~~~~~t~~~~pl~~aaa~a~  295 (406)
T PRK12381        217 NALLIFDEVQTGVGRTGELYAYMHYGVTPDVLTTAKALGGGF-PIGAMLTTEKCASVMTVGTHGTTYGGNPLASAVAGKV  295 (406)
T ss_pred             CCEEEEcchhhCCCCCcchhhhHhhCCCCCEEEehhhhhCCC-ceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999998777777888999999999999998 9999999999999998777788999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+.++++.++++++.+++.+.|+++...++ .+..+++.|.++++.+++.. ......+.+.|.++||++.+.+.+.+
T Consensus       296 l~~l~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~vrg~Gl~~~~~l~~~~-~~~~~~~~~~l~~~Gv~v~~~g~~~l  373 (406)
T PRK12381        296 LELINTPEMLNGVKQRHDWFVERLNTINARYG-LFSEIRGLGLLIGCVLNAEY-AGKAKQISQEAAKAGVMVLIAGPNVV  373 (406)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHhhCC-CEEEEecCeEEEEEEecCch-hhHHHHHHHHHHHCCcEEeeCCCCEE
Confidence            99987778999999999999999998865553 56677888999999886421 01467899999999999988767899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      |++|++.++++++++++++|+++++ ++.+.
T Consensus       374 Rl~p~~~~t~~~i~~~~~~l~~~l~-~~~~~  403 (406)
T PRK12381        374 RFAPALNISEEEITTGLDRFARACE-RFVSR  403 (406)
T ss_pred             EEeCCccCCHHHHHHHHHHHHHHHH-HHHhc
Confidence            9999999999999999999999998 66443

>PRK06943 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4.8e-46  Score=353.25  Aligned_cols=342  Identities=27%  Similarity=0.428  Sum_probs=291.9

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .+.++...+++++|++..+  .++++|++|||+|++.|+++++.++ ..+| ..++.+|+.+..
T Consensus        77 ~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGseAve~AlKlA~~~~-~~rg-~~~r~~Ii~~~~  154 (453)
T PRK06943         77 AALKDQLDTLEHAMLAGCTHEPAIELAERLAALTGGTLGHAFFASDGASAVEIALKMSFHAW-RNRG-RGDKREFVCLAN  154 (453)
T ss_pred             HHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCCHHHHHHHHHHHHHHH-HHhC-CCCCCEEEEECC
Confidence            688899998876554 4668889999999999874  4699999999999999999998764 2234 234689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCC-----------------CHHHHHHHHHhcCCcEEEEEEcc-ccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKESGDQIAGFLFEP-IQGE  140 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~~~~~~~~~vi~~~-~~~~  140 (374)
                      +|||.+.++.++++...++..|.|...++..++++                 +++++++.+.++++++++|++|| +++.
T Consensus       155 ~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAviiEPvvqg~  234 (453)
T PRK06943        155 GYHGETIGALGVTDVALFKDAYDPLIRHAHVVASPDARGARPGETAADVAARALADVRRLFAERAGKIAALIVEPLVQCA  234 (453)
T ss_pred             CcCCCcHHhhcccCChhhhcccccCCCCCEEECCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccc
Confidence            99999999999998877777777765555544433                 24778888877778999999999 5999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~  220 (374)
                      +|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.+.
T Consensus       235 gG~~~~~~~yl~~lr~lc~~~gillI~DEV~TG~GRtG~~fa~~~~gv~PDivt~gKgl~gG~~Pi~av~~~~ei~~~~~  314 (453)
T PRK06943        235 AGMAMHDPSYLRGLRALCDRYGVHLIADEIAVGCGRTGTFFACEQAGVWPDFLCLSKGISGGYLPLSLVLSRDAIFAAFY  314 (453)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCCCcchhHHHhCCCCCCeEeeehhhccCcccceEEEEcHHHHHhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999559999999999988775


Q ss_pred             C------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          221 P------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       221 ~------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      .      ..+++||++++++++++.++|+.++++++.++.++..+++.+.|+++.. .| .+.++++.|.++.+++..+.
T Consensus       315 ~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~~-~~-~v~~vrG~Gl~~gvel~~~~  392 (453)
T PRK06943        315 DDDVTRGFLHSHSYTGNPLACRAALATLDLFAEDDVLARNARKSARLRAALAPLAA-HP-QVRHLRQRGTIFAFDVALDG  392 (453)
T ss_pred             ccCccCCccCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc-CC-CEEeEeccccEEEEEEccCC
Confidence            3      2377899999999999999999999889999999999999999999854 54 67789999999999985321


Q ss_pred             C--chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 L--PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~--~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .  ......+.+.++++|+++.+.+ +.+|++|++.+|++|+++++++|+++++ ++
T Consensus       393 ~~~~~~~~~i~~~~~~~Gll~~~~g-~~l~~~Ppl~it~~eid~~~~~l~~al~-~~  447 (453)
T PRK06943        393 DAARTFSRRFFEAALERELLLRPIG-TTVYLMPPYVLDDDEIAWLAERTRATLD-AT  447 (453)
T ss_pred             CcchHHHHHHHHHHHHCCcEEEecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHH-HH
Confidence            0  1125678899999999998874 5799999999999999999999999998 54

>PRK08742 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=8.7e-46  Score=352.04  Aligned_cols=340  Identities=27%  Similarity=0.430  Sum_probs=289.0

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC-------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG-------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +|+.++++++.+... .+.++...+++++|.+...       .++++|++|||+|++.|+++++.++ ..+| ..++.+|
T Consensus        87 ~Ai~~q~~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~~v~f~~sGSEAvE~AlKlAr~~~-~~~g-~~~r~~i  164 (472)
T PRK08742         87 AAIAAQAGELEQVMLAGFTHEPAVQLAEQLLAIAPRQDGRAPLSKVFYADNGSAGVEVALKMAFHYF-HNRG-EHRRTRF  164 (472)
T ss_pred             HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCcccCCCCCEEEEeCCchHHHHHHHHHHHHHH-HhcC-CCCCcEE
Confidence            688889888766544 3668889999999999763       4699999999999999999999875 2234 3456899


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHhcCCcEEEEEEcc
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESGDQIAGFLFEP  136 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~~~~~~~~vi~~~  136 (374)
                      +.+.++|||.+..+.++++.+.++..+.|...++.++++++                 ++.+++.+..+++++++|++||
T Consensus       165 i~~~~syHG~t~gals~~~~~~~~~~~~p~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~iAAvI~EP  244 (472)
T PRK08742        165 IALENGYHGETIGALAVGDIPLYRRVYAPLLLESLFAPSPDAYLAEPGQSAEDYALQAADALQALFEQSPGEICALILEP  244 (472)
T ss_pred             EEECCCcCCCchhhhhccCCcccccccCCCCCCCEEeCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEcc
Confidence            99999999999999999887777777777666665555532                 4667777776667899999999


Q ss_pred             -ccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          137 -IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       137 -~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                       +++.+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++
T Consensus       245 viqg~gG~~~~p~~fl~~lr~lc~~~gillI~DEV~TGfGRtG~~~a~e~~gv~PDiv~~gKgl~gG~~Plaav~~~~ei  324 (472)
T PRK08742        245 RLQCAGGMRMHHPAYLRRARELCDAHGAFLIADEIATGFGRTGTLFACEQAGVMPDLLCLSKGLTGGFLPLSAVLATQQL  324 (472)
T ss_pred             ccccCCCcccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchHHHhcCCCCCEEEEcccccCCCCCcceeeccHHH
Confidence             6999999999999999999999999999999999999999999999999999999999999999996599999999999


Q ss_pred             HhhcCC------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259          216 MLCIQP------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE  289 (374)
Q Consensus       216 ~~~~~~------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~  289 (374)
                      ++.+..      ..++.||++++++++++.++++.++++++.++.++..+++++.++.+ .++ +.+.++++.|.++.++
T Consensus       325 ~~~~~~~~~~~~~~h~~T~~gnpl~~Aaa~a~L~~i~~~~l~~~~~~~g~~l~~~~~~~-~~~-~~i~dvRG~Gl~~gie  402 (472)
T PRK08742        325 YDAFLDDSRERAFLHSHSYTGNPLACAAALATLDIFADDDVIARNQPTAARMTQLAAQI-GEH-PHVADVRQAGMVVAFE  402 (472)
T ss_pred             HHHhhccCccCccCcCCCCCccHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHH-hcC-CCeeeEeccceEEEEE
Confidence            887642      24678999999999999999999999999999999999999877765 445 4788999999999999


Q ss_pred             eccCCC-c-------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          290 FDKTAL-P-------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       290 ~~~~~~-~-------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +..+.. .       .....+.+.++++|+++.+. ++.|||.|++..|++|+++++++|+++++
T Consensus       403 l~~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~vi~~~PpL~it~~ei~~~~~~l~~~l~  466 (472)
T PRK08742        403 LTRGGNKRTPFPPAARVGLHAYRAALARGVVLRPL-GDVLYWMPPYCVDEAQLALLADTTRHAID  466 (472)
T ss_pred             eccCccccccCCchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            853211 0       01356888899999999887 47999999999999999999999999998

>PRK07030 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=1.1e-45  Score=351.53  Aligned_cols=342  Identities=28%  Similarity=0.467  Sum_probs=292.3

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+..+ .+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ ..+| ..++.+|+.+.+
T Consensus        70 ~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlKlAr~~~-~~~g-~t~r~~ii~~~~  147 (466)
T PRK07030         70 QRIKDQVDQLEHVILAGFSHEPVIELSERLVKITPPGLSRCFYADNGSSAIEVALKMSFHYW-RNRG-KPRKKRFVTLTN  147 (466)
T ss_pred             HHHHHHHHhcCCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH-HHhC-CCCCcEEEEECC
Confidence            688899998776554 466888999999999976  46799999999999999999998764 2234 234588999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHhcCCcEEEEEEcc-ccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESGDQIAGFLFEP-IQGE  140 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~~~~~~~~vi~~~-~~~~  140 (374)
                      +|||.+..+.++++.+.++..+.|...++..+|+++                 ++++++.+.+++++++++++|| +++.
T Consensus       148 ~yHG~t~ga~s~~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~l~~le~~~~~~~~~iAAvi~EP~iqg~  227 (466)
T PRK07030        148 SYHGETLAAMSVGDVALFTETYKPLLLDTIKVPSPDCYLRPEGMSWEEHSRRMFAHMEQTLAEHHDEIAAVIVEPLIQGA  227 (466)
T ss_pred             CcCcccHHHHhccCCccccccCCccCCCCEEcCCCCccccccCCCHHHHHHHHHHHHHHHHHhCCCceEEEEEecccccC
Confidence            999999999988887766666666655555555432                 5667888877778999999999 7999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~  220 (374)
                      +|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.+.
T Consensus       228 gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~TGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~ei~~~~~  307 (466)
T PRK07030        228 GGMRMYHPVYLKLLREACDRYGVHLIHDEIAVGFGRTGTMFACEQAGIRPDFLCLSKALTGGYLPLAAVLTTDTVYQAFY  307 (466)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCccccchHHHhcCCCCCEEeeehhccCCcccceEEEecHHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999559999999999988774


Q ss_pred             C-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          221 P-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       221 ~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      .       ..++.||++++++++++.++|+.++++++.++.++..+++++.|+++. .+ +.+.++++.|.++.+++..+
T Consensus       308 ~~~~~~~~~~h~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~G~~l~~~L~~l~-~~-~~v~~vrG~Gl~~gie~~~~  385 (466)
T PRK07030        308 DDYPTLRAFLHSHSYTGNPLACAAALATLDIFEQDNVIENNRALARRMAEATAHLA-DH-PHVAEVRQTGMILAIEMVQD  385 (466)
T ss_pred             cccccccccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHh-cC-CCEEEeEeceeEEEEEeccC
Confidence            2       247889999999999999999999999999999999999999999885 45 47888999999999998432


Q ss_pred             CCc--------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          294 ALP--------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       294 ~~~--------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...        .....+.+.|+++|+++.+. ++.+|+.|++.+|++|+++++++|.++++ ++
T Consensus       386 ~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~-~~  447 (466)
T PRK07030        386 KASKTPYPWQERRGLKVYQHALERGALLRPL-GSVVYFLPPYVITPEQIDFLAEVASEGID-IA  447 (466)
T ss_pred             ccccccCcchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCccCCHHHHHHHHHHHHHHHH-HH
Confidence            210        01346888999999999886 46999999999999999999999999999 76

>PRK07481 hypothetical protein; Provisional

Probab=100.00  E-value=2.1e-45  Score=349.23  Aligned_cols=343  Identities=31%  Similarity=0.528  Sum_probs=288.4

Q ss_pred             hHHHHHHHhccccCc--CCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|++++++++.+.+.  .+.++...+++++|++..   +.++++|++|||+|++.|+++++.++ ...| .+++.+|+.+
T Consensus        65 ~Ai~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~~-~~~g-~~~r~~ii~~  142 (449)
T PRK07481         65 EAIVRQLDELEYYSTFDGTTHPRAIELSYELIDMFAPEGMRRVFFSSGGSDSVETALKLARQYW-KVRG-QPERTKFISL  142 (449)
T ss_pred             HHHHHHHHhccceecccccCCHHHHHHHHHHHHhcCCCCCCEEEEcCchHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEE
Confidence            688899998876543  356888999999999987   35789999999999999999999875 2234 3456899999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceecc--------CC--CHHHH--------HHHHH-hcCCcEEEEEEccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FG--DITAL--------EKIFK-ESGDQIAGFLFEPI  137 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~--d~~~l--------e~~l~-~~~~~~~~vi~~~~  137 (374)
                      +++|||.+..+.++++.+.++..+.|..+++..++        ++  |++.+        |+.+. .+++++++|++||+
T Consensus       143 ~~~yHG~t~ga~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~iAAviiEPv  222 (449)
T PRK07481        143 KQGYHGTHFGGASVNGNTVFRRNYEPLLPGCFHVETPWLYRNPFTEQDPEELARICARLLEREIAFQGPDTIAAFIAEPV  222 (449)
T ss_pred             CCCcCCcchhhhccCCCcccccccCCCCCCCEEeCCCcccccccCCCCHHHHHHHHHHHHHHHHHhcCCCcEEEEEEecc
Confidence            99999999998888877666665666555554443        33  44443        44444 34578999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      ++.+|.+.++++++++|.++|++||+++|+||+++||||+|..++++.+++.||+++++|+++||++|+|.+++++++++
T Consensus       223 qg~gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gKgl~gG~~Pi~av~~~~~i~~  302 (449)
T PRK07481        223 QGAGGVIVPPANFWPLVREVCDRHGILLIADEVVTGFGRTGSWFGSRGWGVKPDIMCLAKGITSGYVPLGATMVNARIAD  302 (449)
T ss_pred             cCCcCCccCCHHHHHHHHHHHHHcCCEEEEeehhhCcCcCchhhHhhhcCCCCCEEEEeecccCCCcCceEEEEcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999559999999999988


Q ss_pred             hcCC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          218 CIQP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       218 ~~~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      .+..       ..+++||++++++++++.++++.++++++.+++++..+++++.|+++...+ +.+.++++.|.++.+++
T Consensus       303 ~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrG~Glm~gi~l  381 (449)
T PRK07481        303 AFEANADFGGAIMHGYTYSGHPVACAAALATLDIVVREDLPANAAKRGAYLLEGLQPLKERF-ELVGDVRGKGLMLALDL  381 (449)
T ss_pred             HHhccCccccccccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcC-CCeEEEeecceEEEEEe
Confidence            8753       247789999999999999999999888999999999999999999988766 48889999999999998


Q ss_pred             ccCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          291 DKTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       291 ~~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..+..        ......+.+.|+++|+++.+.+ +.+|++|++++|++|+++++++|.++++ ++
T Consensus       382 ~~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~g-~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~  446 (449)
T PRK07481        382 VADKATREPIDPSKGYANAVADVARENGVLVRPSG-TKIILSPPLVIQREDVDRIVDALDAGLS-AV  446 (449)
T ss_pred             cccccccCCCCchhHHHHHHHHHHHhCCeEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence            43210        1134578888999999998874 5699999999999999999999999998 54

>PRK04073 rocD ornithine--oxo-acid transaminase; Provisional

Probab=100.00  E-value=1.3e-45  Score=347.90  Aligned_cols=332  Identities=53%  Similarity=0.914  Sum_probs=288.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.+....++...+++++|+++.+.+++++++||++|++.|+++++.+++...|.+.++++|+.+..+||
T Consensus        63 ~ai~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGseA~e~Alk~a~~~~~~~~g~~~~r~~ii~~~~~~H  142 (396)
T PRK04073         63 QALKDQADKVTLTSRAFHSDQLGPWYEKVAKLTGKDMVLPMNTGAEAVETAIKAARRWAYDVKGVEPNKAEIIACEGNFH  142 (396)
T ss_pred             HHHHHHHhhccccccccCCHHHHHHHHHHHhcCCCCeEEEcCChHHHHHHHHHHHHHHhhhccCCCCCCCEEEEECCCcC
Confidence            68888998877765556678899999999998888999999999999999999998764333343345689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.+...+.+..+++..++++|++++++.+.   +++++++++|++|++|.+.++++++++|.++|++|
T Consensus       143 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~viiep~~~~~G~~~~~~~~l~~l~~l~~~~  219 (396)
T PRK04073        143 GRTMAAVSLSSEEEYKRGFGPMLPGIKKIPYGDLEALKAAIT---PNTAAFLVEPIQGEAGINIPPEGFLKAARELCKEE  219 (396)
T ss_pred             CCCHHHHhhcCCcccccCCCCCCCCceEeCCCCHHHHHHhcc---cCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999988888877767777777777788889999999999886   57999999999999999998889999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |+++|+||+|+|+++.|..++.+..++.||++++||++++| + |+|++++++++++.+....+..+|++++++++++.+
T Consensus       220 g~lli~DEv~~g~g~~g~~~~~~~~~~~pdi~~~sK~lg~gg~-~ig~~~~~~~i~~~~~~~~~~~t~~~~~~~~aaa~a  298 (396)
T PRK04073        220 NVLFIADEIQTGLGRTGKLFACDWDNVTPDMYILGKALGGGVF-PISCVAANRDILGVFTPGSHGSTFGGNPLACAVSIA  298 (396)
T ss_pred             CCEEEEecchhCCCcCcHHHHhhhcCCCCCEEEecccccCCCC-cceEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999988777767778899999999999975 7 999999999999998776677899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +|+.++++++.++.+++++++.+.|+++.  . +.+...++.|.++++.++.     ...++++.|+++||++.+...++
T Consensus       299 aL~~~~~~~l~~~~~~~~~~l~~~L~~l~--~-~~i~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gv~~~~~~~~~  370 (396)
T PRK04073        299 ALEVLEEEKLPERSLELGEYFKEQLKEID--N-PMIKEVRGRGLFIGVELNE-----PARPYCEALKEEGLLCKETHETV  370 (396)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHhhc--C-CcccceecceEEEEEEecc-----hHHHHHHHHHHCCeEEecCCCCE
Confidence            99988777888999999999999998863  2 2445667789998888753     46789999999999998876789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +||+|++..+++++++++++|++++
T Consensus       371 iRi~p~l~~t~e~i~~~~~~l~~~l  395 (396)
T PRK04073        371 IRFAPPLVITKEELDWAFEKIKAVL  395 (396)
T ss_pred             EEEECCcccCHHHHHHHHHHHHHHh
Confidence            9999999999999999999998875

>PRK07483 hypothetical protein; Provisional

Probab=100.00  E-value=1.8e-45  Score=348.77  Aligned_cols=344  Identities=32%  Similarity=0.508  Sum_probs=289.4

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .+.++...+++++|++..  +.++++|++|||+|++.|+++++.+. ..+| .+++.+|+.+..
T Consensus        53 ~av~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~-~~~g-~~~r~~Ii~~~~  130 (443)
T PRK07483         53 AAIHAQIDRLAYAHTSFFTTEPAEALADRLVAAAPAGLEHVYFVSGGSEAVEAALKLARQYF-VEIG-QPQRRHFIARRQ  130 (443)
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECC
Confidence            688899988765443 356888899999999976  46899999999999999999999774 2334 345689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccC----CC--------------HHHHHHHHHh-cCCcEEEEEEccccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GD--------------ITALEKIFKE-SGDQIAGFLFEPIQG  139 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d--------------~~~le~~l~~-~~~~~~~vi~~~~~~  139 (374)
                      +|||.+..+.++++.+.++..+.|...++..+++    ++              ++++++.+.. +++++++|++||+++
T Consensus       131 ~YHG~t~~a~s~s~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~iAAvivEPiqg  210 (443)
T PRK07483        131 SYHGNTLGALAIGGNAWRREPFAPLLIEAHHVSPCYAYREQRAGESDEAYGQRLADELEAKILELGPDTVAAFVAETVVG  210 (443)
T ss_pred             CcCCcCHHHhhhcCCcccccccCCCCCCCEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCceEEEEEeCccc
Confidence            9999999999988877666666665555554432    22              2567766653 446899999999998


Q ss_pred             -CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          140 -EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       140 -~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                       .+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.
T Consensus       211 ~~gG~~~~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~  290 (443)
T PRK07483        211 ATAGAVPPVPGYFKRIREVCDRYGVLLILDEVMCGMGRTGTLFACEEDGVAPDLVTIAKGLGAGYQPIGAVLASDRIYDA  290 (443)
T ss_pred             CcCCeEeCCHHHHHHHHHHHHHhCCEEEEecceeCcccCcHHHHHhhcCCCCCeeeehhhhccCccccEEEEEcHHHHHH
Confidence             4788999999999999999999999999999999999999999999999999999999999996599999999999888


Q ss_pred             cCCC----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          219 IQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       219 ~~~~----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      +...    .+++||++++++++++.+.++.++++++.++.++..+++++.|+++..++| .+.++++.|.++.+++.++.
T Consensus       291 ~~~~~~~~~h~~T~~gnpl~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vRG~Glm~gie~~~~~  369 (443)
T PRK07483        291 IADGSGFFQHGHTYLGHATACAAALAVQRVIAEDGLLANVRARGEQLRARLRERLGQHP-HVGDIRGRGLFVGVELVADR  369 (443)
T ss_pred             HhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhcCC-CeeeEeecccEEEEEEeecc
Confidence            7542    477899999999999999999999999999999999999999998877764 78899999999999984321


Q ss_pred             C--------chhHHHHHHHHHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 L--------PVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~--------~~~~~~~~~~l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .        ......+.+.++++|+++.+.+       ++.+|+.|+++.+++|+++++++|+++++ ++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~~~~~~~~~~~l~~~PpL~it~~eid~~~~~l~~~l~-~~  438 (443)
T PRK07483        370 ATKAPFDPALKLHARIKREAMARGLMVYPMGGTIDGVRGDHVLLAPPFIITAAQIDEIVERLGDAID-AA  438 (443)
T ss_pred             cccCCCCchhhHHHHHHHHHHHCCcEEEecCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            0        0124678899999999997652       47999999999999999999999999998 54

>PLN02760 4-aminobutyrate:pyruvate transaminase

Probab=100.00  E-value=4.1e-45  Score=349.76  Aligned_cols=343  Identities=27%  Similarity=0.414  Sum_probs=283.4

Q ss_pred             ChHHHHHHHhccccCc--CCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            1 MKALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      ++|+.++++++.+..+  .++++...+++++|.+.+   +.++++|++||++|++.|+++++.+. ...| .+++.+||.
T Consensus       111 ~~Av~~ql~~~~~~~~~~~~~~~~~~~lae~L~~~~~~~~~~~v~f~~SGsEA~e~AlKlAr~~~-~~~g-~~~r~~iI~  188 (504)
T PLN02760        111 VAAATEQLNKLPFYHSFWNRTTKPSLDLAKELLEMFTARKMGKVFFTNSGSEANDTQVKLVWYYN-NALG-RPNKKKFIA  188 (504)
T ss_pred             HHHHHHHHhhccceecccccCcHHHHHHHHHHHhhcCCCCCCEEEEeCChHHHHHHHHHHHHHHH-HhcC-CCCCcEEEE
Confidence            3688999988766543  356888999999999975   24689999999999999999998764 2234 234689999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCC----------C--------HHHHHHHHHh-cCCcEEEEEEcc
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----------D--------ITALEKIFKE-SGDQIAGFLFEP  136 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d--------~~~le~~l~~-~~~~~~~vi~~~  136 (374)
                      ++.+|||.+..+..+++.+.++..+.+....+..++++          +        .+++++.+.+ .++++++|++||
T Consensus       189 ~~~~yHG~t~~a~slsg~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAAvI~EP  268 (504)
T PLN02760        189 RSKSYHGSTLISASLSGLPALHQKFDLPAPFVLHTDCPHYWRFHLPGETEEEFSTRLADNLENLILKEGPETIAAFIAEP  268 (504)
T ss_pred             ECCCccCChHhhhhccCChhhccCCCCCCCCcEEeCCCcccccCCCCCcHHHHHHHHHHHHHHHHHhcCCCceEEEEECC
Confidence            99999999988888877665544444332333333221          1        2457777753 346799999999


Q ss_pred             ccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHH
Q 017259          137 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM  216 (374)
Q Consensus       137 ~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~  216 (374)
                      +++.+|.+.++++++++|.++|++||+++|+||+++||||+|..++++++++.||+++++|+++||++|+|.++++++++
T Consensus       269 v~g~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~TGfGRtG~~~a~e~~gv~PDivtlgK~lggG~~PigAv~~~~~i~  348 (504)
T PLN02760        269 VMGAGGVIPPPATYFEKIQAVLKKYDILFIADEVICAFGRLGTMFGCDKYNIKPDLVSLAKALSSAYMPIGAVLVSPEIS  348 (504)
T ss_pred             ccCCCCCcCCCHHHHHHHHHHHHHcCCEEEecchhhCCcccchhhHHHhcCCCCcEEEecccccCCccccceEeecHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999866999999999998


Q ss_pred             hhcCC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259          217 LCIQP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE  289 (374)
Q Consensus       217 ~~~~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~  289 (374)
                      +.+..       ..+++||+++++++++++++|+.++++++.++++++.+++++.|+++ ... +++.++++.|.++.++
T Consensus       349 d~~~~~~~~~~~~~h~~T~~gnPl~~Aaala~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~-~~v~~vrG~Gl~~gie  426 (504)
T PLN02760        349 DVIHSQSNKLGSFAHGFTYSGHPVSCAVALEALKIYKERNIPEHVNKIAPRFQDGIKAF-SGS-PIIGEIRGTGLILGTE  426 (504)
T ss_pred             hhhhcccccccCcccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHH-hcC-CCeeeEEeCceEEEEE
Confidence            88753       24788999999999999999999998899999999999999999998 555 4888899999999998


Q ss_pred             eccCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          290 FDKTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       290 ~~~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.++..        ......+.+.|+++||++.+.+ +.+|++|++.+|++|+++++++|+++++ .+
T Consensus       427 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~g-~~lrl~Ppl~it~eeid~~~~~l~~al~-~~  492 (504)
T PLN02760        427 FVDNKSPNDPFPAEWGVGAYFGAECKKRGMLVRVAG-DNIMMSPPLIITPEEVDELISIYGKALK-AT  492 (504)
T ss_pred             EecCCcccccccchhHHHHHHHHHHHhCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            854321        0125568889999999998764 6899999999999999999999999987 55

>PRK07495 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=8.7e-45  Score=342.60  Aligned_cols=337  Identities=34%  Similarity=0.613  Sum_probs=288.7

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+... .++++...+++++|++...   .++++|++|||+|++.|+++++.+.    |    +.+|+.+.
T Consensus        63 ~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~SGseA~e~AlklAr~~t----g----r~~ii~~~  134 (425)
T PRK07495         63 AAVKAQLDRFTHTCHQVVPYENYVRLAERLNALVPGDFAKKTIFVTTGAEAVENAVKIARAAT----G----RSAVIAFG  134 (425)
T ss_pred             HHHHHHHhhccCcccCccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhh----C----CCeEEEEC
Confidence            688999998776543 4668889999999999873   2689999999999999999998652    3    47899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCCC----------HHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD----------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d----------~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+..+++. ..+..++.|...++..+++++          ++.+++.+++  .++++++++++|+++++|.+
T Consensus       135 ~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~~~~~~iaavi~EPv~g~~G~~  214 (425)
T PRK07495        135 GGFHGRTFMGMSLTGKVVPYKVGFGAMMPDVYHVPFPVELHGVSVEQSLAALDKLFKADVDPQRVAAIIIEPVQGEGGFY  214 (425)
T ss_pred             CCcCCccHHHhhhcCCCcccccCCCCCCCCeEEecCCcccccccHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCc
Confidence            9999999888777664 346666777666777777764          4556777753  34679999999999998888


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||+++|+||+|+||+++|..++++.+++.||++++||++++|+ |+|++++++++++.+....+
T Consensus       215 ~~~~~~l~~l~~l~~~~g~llI~DEv~tG~gr~G~~~a~~~~gv~pDi~tlsK~l~~G~-pigav~~~~~i~~~~~~~~~  293 (425)
T PRK07495        215 PAPAAFMKALRELCDQHGILLIADEVQTGFARTGKLFAMEHHEVAADLTTMAKGLAGGF-PLAAVTGRAEIMDAPGPGGL  293 (425)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEechhhcCCcCCCceeecccCCCCCEEeehhhhcCCc-cceEEEEcHHHHhccCCCCc
Confidence            88999999999999999999999999999999998888888899999999999999998 99999999999998887778


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----chhHH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAY  300 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~  300 (374)
                      ..||++++++++++.++++.++++++.+++++++++++++|+++...+| .+.++++.|.++++++.+...    .....
T Consensus       294 ~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~iel~~~~~~~~~~~~~~  372 (425)
T PRK07495        294 GGTYGGNPLGIAAAHAVLDVIEEEDLCERANQLGNRLKQRLASLRETVP-EIADIRGPGFMNAVEFNDADSGLPSAEFAN  372 (425)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHhhCC-CeeeeecCceEEEEEEecCCCCCccHHHHH
Confidence            8899999999999999999998889999999999999999999887774 777888999999999854211    11255


Q ss_pred             HHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+.|+++|+++.+.+  ++.+|+.|+++.|++++++++++|+++++ .+
T Consensus       373 ~~~~~~~~~Gvl~~~~g~~~~~~r~~Ppl~it~~~id~~~~~l~~~l~-~~  422 (425)
T PRK07495        373 RVRLKALEKGLILLTCGVHGNVIRFLAPITIQDDVFAEALDILEASIL-EA  422 (425)
T ss_pred             HHHHHHHHCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-HH
Confidence            78888999999997643  58999999999999999999999999998 65

>PRK06062 hypothetical protein; Provisional

Probab=100.00  E-value=5.4e-45  Score=346.22  Aligned_cols=337  Identities=30%  Similarity=0.506  Sum_probs=283.8

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      ++|+.++++++.+..+.+.++...+++++|++..  +.++++|++|||+|++.|+++++.+.    |    +.+|+.+.+
T Consensus        75 ~~Ai~~q~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~t----g----r~~ii~~~~  146 (451)
T PRK06062         75 VAAIQEQAARLCTVAPAHANDARSEAARLIAERAPGDLSKVFFTNGGADANEHAVRMARLHT----G----RPKVLSAYR  146 (451)
T ss_pred             HHHHHHHHHhcCCcCCccCCHHHHHHHHHHHHhCCCCCCEEEEcCChHHHHHHHHHHHHHhh----C----CceEEEEeC
Confidence            3688999999888766777899999999999987  36899999999999999999998753    2    488999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceec--------cC---CC-------HHHHHHHHHhc-CCcEEEEEEccccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV--------DF---GD-------ITALEKIFKES-GDQIAGFLFEPIQG  139 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---~d-------~~~le~~l~~~-~~~~~~vi~~~~~~  139 (374)
                      +|||.+..+.++++.+..... .|...++..+        ++   +|       ++++++.++.+ ++++++|++||+++
T Consensus       147 ~yHG~t~~als~~~~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~iAaviiEPv~g  225 (451)
T PRK06062        147 SYHGGTGSAINLTGDPRRWPN-DTGRAGVVHFFGPFLYRSEFHATTEEEECERALAHLERVIELEGPSTIAAILLESVPG  225 (451)
T ss_pred             CCCCCCHHHHhhcCCcccccC-CCCCCCCEEeCCCCccccccCCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEccccC
Confidence            999999999888765433221 2222222222        12   22       67788888654 36799999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      ++|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|++++|++|+|.+++++++++.+
T Consensus       226 ~gG~~~p~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~~~~gv~PDi~t~gK~lggG~~Pigav~~~~~i~~~~  305 (451)
T PRK06062        226 TAGILVPPPGYLAGVRELCDRHGIVLIADEVMAGFGRTGKWFAIEHFGVVPDLITFAKGVNSGYVPLGGVAISEAIAATF  305 (451)
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEeeccccCCCcCcHHHHHHhcCCCCCeeeechhhhcCCcCcEEEEEcHHHHHHh
Confidence            99999999999999999999999999999999999999999999999999999999999999966999999999999888


Q ss_pred             CCC--CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHH-HHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-
Q 017259          220 QPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLG-EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-  295 (374)
Q Consensus       220 ~~~--~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  295 (374)
                      ...  .+++||+++++++++++++|+.++++++.++.++.+ +++++.|+++...+| .+.++++.|.++.+++..+.. 
T Consensus       306 ~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~G~~~l~~~L~~l~~~~~-~v~~vrG~Gl~~gve~~~~~~~  384 (451)
T PRK06062        306 ADRPYPGGLTYSGHPLACAAAVATINAMEEEGIVENAARIGAEVLGPGLRELAERHP-SVGEVRGLGVFWALELVADRET  384 (451)
T ss_pred             ccCCCCCCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhcCC-cEEeEeccccEEEEEEcccccc
Confidence            643  467799999999999999999998889999999998 699999999877764 778899999999999843210 


Q ss_pred             -----c-----hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 -----P-----VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 -----~-----~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                           .     .....+.+.|+++||++.+. .+.+|++|++.+|++|+++++++|+++++ .+
T Consensus       385 ~~~~~~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lrl~ppl~~t~~eid~~~~~l~~~l~-~~  446 (451)
T PRK06062        385 REPLAPYGASSAAMAAVKAACKERGLLPFVN-GNRIHVVPPCTVTEDEVREGLAILDAALA-VA  446 (451)
T ss_pred             cCCCcccchhhHHHHHHHHHHHHCCcEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHH-Hh
Confidence                 0     12457889999999998875 57899999999999999999999999998 54

>PRK06916 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4e-45  Score=347.96  Aligned_cols=342  Identities=31%  Similarity=0.542  Sum_probs=291.5

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+... .+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ ..+| ..++.+|+.+++
T Consensus        79 ~Ai~~ql~~l~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlklAr~~~-~~~g-~tgr~~ii~~~~  156 (460)
T PRK06916         79 EAIREQLNKIAHSTLLGLANVPSILLAEKLIEVVPEGLKKVFYSDSGATAVEIAIKMAFQYW-QNKG-KPKKQRFVTLKN  156 (460)
T ss_pred             HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECC
Confidence            688999998776554 356888899999999987  35799999999999999999999764 2233 345689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCC-----------------CHHHHHHHHHhcCCcEEEEEEcc-ccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKESGDQIAGFLFEP-IQGE  140 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~~~~~~~~~vi~~~-~~~~  140 (374)
                      +|||.+..+.++++...++..+.|...++..+|++                 +++.+++.+++++++++++++|| +++.
T Consensus       157 ~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~p~p~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~iAAvi~EP~iqg~  236 (460)
T PRK06916        157 AYHGDTIGAVSVGAIDLFHQVYSSLLFEAIKMPYPYTYRSPYGNDKAEIVKKHLEELEELLKEKHEEIAAIIVEPLVQGA  236 (460)
T ss_pred             cCCcccHHhHhccCCcccccccCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHhCCCcEEEEEEeccccCC
Confidence            99999999999888777777777665555555432                 24567788877778999999999 6999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~  220 (374)
                      +|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.+.
T Consensus       237 gG~~~~~~~fl~~lr~lc~~~g~llI~DEV~TG~GRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~ei~~~~~  316 (460)
T PRK06916        237 GGMITMPKGYLKGLRNLCTKYNVLFITDEVATGFGRTGKMFACEHENVTPDIMTAGKGLTGGYLPIAITVTTDEIYNAFY  316 (460)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEeechhhCCCcCchhhHHHhcCCCCCeeeeehhhhcCccccceeeecHHHHHHhh
Confidence            99999999999999999999999999999999999999999999999999999999999999559999999999988764


Q ss_pred             C-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          221 P-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       221 ~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      .       ..++.||++++++++++.++++.++++++.++++++.+++++.|+++.. + +.+.++++.|.++.+++.++
T Consensus       317 ~~~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~-~~v~~vrG~Glm~giel~~~  394 (460)
T PRK06916        317 GDYEEQKTFFHGHSYTGNPLGCAVALANLELYEKTNLIEQVARKTEYVATQLEDLFA-L-KHVGDIRQLGLMVGIELVKN  394 (460)
T ss_pred             ccccccCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-C-CCeEEeecCCceeeEEeecc
Confidence            2       2467799999999999999999998889999999999999999999864 5 47888999999999988532


Q ss_pred             CC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          294 AL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       294 ~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..        ......+...|+++|+++.+. ++.+|+.|+++++++|+++++++|+++++ ++
T Consensus       395 ~~~~~~~~~~~~~~~~i~~~~~~~Gvl~~~~-g~~l~~~Ppl~it~~~id~~~~~l~~~l~-~~  456 (460)
T PRK06916        395 KETKEPFEWTERVGVQVCKRSRELGMLTRPL-GNTIVFMPPLASTIDELDEMLRILYKAIS-DV  456 (460)
T ss_pred             cccccCCCchhhHHHHHHHHHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHH-hh
Confidence            11        001357889999999999886 47999999999999999999999999998 65

>PRK06173 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=4e-45  Score=344.65  Aligned_cols=337  Identities=28%  Similarity=0.473  Sum_probs=285.9

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+..+ .+.++...+|+++|++..  +.++++|++||++|++.|+++++.++ ..+| .+++.+|+.+.+
T Consensus        67 ~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~-~~~g-~~~r~~ii~~~~  144 (429)
T PRK06173         67 AAATNQLAKMSHIMFGGFTHEPAVELAQKLLEILPPSLNKIFFADSGSVAVEVAMKMALQYQ-QAKG-EVQRTKFATIRS  144 (429)
T ss_pred             HHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCchHHHHHHHHHHHHHH-HHhC-CCCCcEEEEECC
Confidence            688899998877554 356888999999999987  46899999999999999999999774 3334 345689999999


Q ss_pred             CCCCcccccccccCC-ccccccCCCCCCCceeccCC-----------CHHHHHHHHHhcCCcEEEEEEccc-cCCCCccc
Q 017259           79 CFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG-----------DITALEKIFKESGDQIAGFLFEPI-QGEAGVII  145 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------d~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~~  145 (374)
                      +|||.+..+.++++. +.++..+.+....+..++++           +++.+++.+..++++++++++||+ ++.+|.+.
T Consensus       145 ~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~l~~l~~~i~~~~~~iAAvi~EPi~qg~gG~~~  224 (429)
T PRK06173        145 GYHGDTWHAMSVCDPVTGMHGLFNHSLPVQYFLPQPSIKFGEEWNDEAIEPLQDLLEQKGDEIAALILEPVVQGAGGMYF  224 (429)
T ss_pred             CcCCcchhhhccCCCchhhhhcccccCCCCeEeCCCCcccchhHHHHHHHHHHHHHHhCCCcEEEEEEcchhhccCCccc
Confidence            999998888877653 33555555544444444432           366678888766678999999996 99999999


Q ss_pred             CChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC----
Q 017259          146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP----  221 (374)
Q Consensus       146 ~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~----  221 (374)
                      ++++++++|.++|++||+++|+||+|+|+|++|..|+++++++.||++++||+++||+++++.++.++++++.+.+    
T Consensus       225 ~~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~~p~~a~~~~~~i~~~~~~~~~~  304 (429)
T PRK06173        225 YSPTYLVKARELCDQYGVLLIFDEIATGFGRTGKLFALEHAGVVPDIMCIGKALTGGYLTLSATITTEAIAQTICSGEAK  304 (429)
T ss_pred             CCHHHHHHHHHHHHHcCCeEEecchhcCCCcCCcchHHHhcCCCCCEEEeehhhhCCccccceEEecHHHHHHHhcCCCC
Confidence            9999999999999999999999999999999999988888999999999999999996699999999998887753    


Q ss_pred             -CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHH
Q 017259          222 -GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       222 -~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  300 (374)
                       ..++.||.++++++++++++++.++++++.++++++.+++++.|+++. .+ +.+..+++.|.++.+++.+..   ...
T Consensus       305 ~~~~~~T~~g~p~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~-~~-~~v~~vRg~Gl~~~iel~~~~---~~~  379 (429)
T PRK06173        305 CFMHGPTFMANPLACAIAAESIRLLLESPWQQNIQRIEAQLKQELAPAA-EF-DSVAEVRVLGAIGVVEMKEPV---NMA  379 (429)
T ss_pred             ccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhh-cC-CCeeeeeccceEEEEEeCCcc---cHH
Confidence             246678999999999999999999888899999999999999998763 34 366778899999999996543   467


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.|+++||++.+.+ +.+|+.||++.+++|+++++++|++++.
T Consensus       380 ~i~~~l~e~Gi~v~~~g-~~l~~~Ppl~it~~ei~~~~~~l~~~l~  424 (429)
T PRK06173        380 TLQPRFVEHGIWVRPFG-KLVYIMPPFIISPDELSQLTSGLLRVLK  424 (429)
T ss_pred             HHHHHHHHCCeEEEecC-CEEEEeCCccCCHHHHHHHHHHHHHHHH
Confidence            89999999999998874 6999999999999999999999999997

>PRK07986 adenosylmethionine--8-amino-7-oxononanoate transaminase; Validated

Probab=100.00  E-value=7.4e-45  Score=342.36  Aligned_cols=337  Identities=30%  Similarity=0.459  Sum_probs=286.0

Q ss_pred             ChHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            1 MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      ++|++++++++.+... .+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ ..+|  .++.+|+.+.
T Consensus        65 ~~Ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~SGsEAve~AlklAr~~~-~~~g--~~r~kii~~~  141 (428)
T PRK07986         65 NAAMKSQIDAMSHVMFGGITHPPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-QAKG--EPRQRFLTLR  141 (428)
T ss_pred             HHHHHHHHhhcCCccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH-HhcC--CCCcEEEEEC
Confidence            3688899998776554 356888999999999987  35799999999999999999998764 2222  2358899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceecc-----------CCCHHHHHHHHHhcCCcEEEEEEccc-cCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVD-----------FGDITALEKIFKESGDQIAGFLFEPI-QGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------~~d~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~  144 (374)
                      ++|||.+..+.++++. ..+...+.+..+++..++           ++|++++++.++++++++++|++||+ ++.+|.+
T Consensus       142 ~~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~~~~~~iaavi~Epi~~g~gg~~  221 (428)
T PRK07986        142 HGYHGDTFGAMSVCDPDNSMHSLYKGYLPENLFAPAPQSRFDGEWDERDIAPFARLMAAHRHEIAAVILEPIVQGAGGMR  221 (428)
T ss_pred             CCcCCCcHhhhcccCCchhhhhccCCCCCCCEEECCCCcccchhhHHHHHHHHHHHHHhCCCcEEEEEEechhcCcCCcc
Confidence            9999999888887653 334444555444443332           24677888888876678999999995 8889998


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC--
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--  222 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--  222 (374)
                      .++++++++|.++|++||+++|+||+++|+|++|..|+++++++.||++++||+++||++|+|.+++++++++.+...  
T Consensus       222 ~~~~~~L~~l~~lc~~~g~lLI~DEv~tG~GrtG~~fa~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~  301 (428)
T PRK07986        222 IYHPEWLKRVRKLCDREGILLIADEIATGFGRTGKLFACEHAGIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEA  301 (428)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCccCCCeeeecccCCCCCEEEechhhhCCcccCcchhchHHHHHHhhcCCC
Confidence            999999999999999999999999999999999999999999999999999999999955999999999999888653  


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhH
Q 017259          223 ---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       223 ---~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  299 (374)
                         .++.||++++++++++.++++.++++++.++++++.+++++.|+++.. + +.+.++++.|.++.+++.+..   ..
T Consensus       302 ~~~~~~~T~~g~p~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~l~~-~-~~i~~vRg~Gl~~~ve~~~~~---~~  376 (428)
T PRK07986        302 GCFMHGPTFMGNPLACAVANASLSLLESGDWQQQVAAIEAQLREELAPLRD-A-PMVADVRVLGAIGVVETTRPV---NM  376 (428)
T ss_pred             CccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-C-CCEEeEeccceEEEEEeCCcc---cH
Confidence               367899999999999999999998889999999999999999998754 4 367889999999999886543   46


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..+.+.|+++|+++.+.+ +.+|+.|++.+|++|+++++++|.++++
T Consensus       377 ~~~~~~l~~~Gl~~~~~g-~~i~~~Ppl~it~~ei~~~~~~l~~~l~  422 (428)
T PRK07986        377 AALQRFFVEQGVWIRPFG-KLIYLMPPYIILPEQLQRLTAAVNRAVQ  422 (428)
T ss_pred             HHHHHHHHHCCcEEEecC-CEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            789999999999998874 7999999999999999999999999987

>PRK03715 argD acetylornithine transaminase protein; Provisional

Probab=100.00  E-value=6e-45  Score=341.15  Aligned_cols=333  Identities=35%  Similarity=0.600  Sum_probs=286.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++.++.+....+.+++..+++++|.+..+.++++|++||++|++.|+++++.++ . ++ .+++++||.++++||
T Consensus        59 ~a~~~q~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~f~~SGseA~e~Aik~ar~~~-~-~~-~~~r~~ii~~~~~yH  135 (395)
T PRK03715         59 EALAAQAEKLINPSPAFYNEPMAKLAGLLTQHSCFDKVFFANSGAEANEGAIKLARKWG-R-KH-KNGAYEIITFDHSFH  135 (395)
T ss_pred             HHHHHHHHhcccccccccCHHHHHHHHHHhhccCCCEEEEeCCcHHHHHHHHHHHHHHh-h-cc-CCCCcEEEEECCCcC
Confidence            67888888876655556678888999999987778899999999999999999998763 1 22 234588999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++...++..+.|...++...+++|++++++.+.   ++++++++||+++++|.+.++++++++|.++|++|
T Consensus       136 G~t~~~~~~s~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~aavi~Epv~~~gG~~~~~~~~l~~l~~l~~~~  212 (395)
T PRK03715        136 GRTLATMSASGKPGWDTIFAPQVPGFPKAELNDIASVEKLIT---DKTVAVMLEPVQGEGGVIPATREFMQQLRALTKQH  212 (395)
T ss_pred             CChHHHHhhcCCcccccCCCCCCCCceeeCCchHHHHHHHcC---CCceEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc
Confidence            999999988887767766766666666677889999999886   57999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+|++|..++++++++.||++++||++++|+ |+|++++++++. .+....++.||+++++++++++++
T Consensus       213 ~~llI~DEv~tG~GRtG~~~a~~~~gv~PDi~t~gK~lg~G~-p~~av~~~~~i~-~~~~~~~~~T~~g~pl~~aaala~  290 (395)
T PRK03715        213 GLLLIVDEVQTGCGRTGTLFAYELSGIEPDIMTLGKGIGGGV-PLAALLAKAEVA-VFEAGDQGGTYNGNPLMTAVGVAV  290 (395)
T ss_pred             CCEEEEeccccCCCCCcchhhHhhcCCCCceeeehhhhhCCc-ceEEEEEccccc-cccCCCcCCCCCCCHHHHHHHHHH
Confidence            999999999999999999999999999999999999999997 999999998875 344445678999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC---CeEeccCCC
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER---GILAKPTHD  318 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~---Gi~v~~~~~  318 (374)
                      ++.++++++.++++++.+++++.|+++...+ + +...++.|.++.+++.+.    ....+.+.+.+.   |+++.+...
T Consensus       291 L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~-~-i~~vrG~Glm~~i~l~~~----~~~~~~~~~~~~~~~Gi~~~~~~~  364 (395)
T PRK03715        291 ISQLLAPGFLEGVRARGEYLKEKLLELSEER-G-LEGERGEGLLRALLLGKD----IGPQIVEKARDMQPDGLLLNAPRP  364 (395)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHhhcC-C-cCeEEcceeEEEEEecCc----hHHHHHHHHHhccCCCEEEeecCC
Confidence            9999888999999999999999999887665 3 455788999999998653    345666666666   999987667


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.+|++|++.+|++|+++++++|+++++ .+
T Consensus       365 ~~lR~~p~l~~t~~ei~~~~~~l~~~l~-~~  394 (395)
T PRK03715        365 NLLRFMPALNVTTEEIDQMIAMLRSVLD-KL  394 (395)
T ss_pred             CEEEEeCCcccCHHHHHHHHHHHHHHHH-hh
Confidence            8999999999999999999999999987 54

>KOG1404 consensus Alanine-glyoxylate aminotransferase AGT2 [Amino acid transport and metabolism]

Probab=100.00  E-value=2e-45  Score=321.48  Aligned_cols=330  Identities=32%  Similarity=0.493  Sum_probs=287.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+|+.+++|+++.+.+++..++++.|.+.+  +.+.++|+||||||+++|+++++.|+    |    .-+||..+.+
T Consensus        73 ~a~~kQl~~l~H~t~~~~~~pi~~~Ae~L~s~~P~~l~~vfF~nsGsEANelal~mar~Yt----~----~~diIa~r~~  144 (442)
T KOG1404|consen   73 AAAVKQLKKLYHTTSGYLNPPIHDLAEALVSKLPGDLKVVFFVNSGSEANELALKMARLYT----G----NLDIIARRNS  144 (442)
T ss_pred             HHHHHhhhhhEEeeccccCCcHHHHHHHHHHhCCCCceEEEEecCCchHHHHHHHHHHHhc----C----CceEEEeecc
Confidence            688999999999999999999999999999987  66789999999999999999999875    2    2689999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHh-cCCcEEEEEEccccCC
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKE-SGDQIAGFLFEPIQGE  140 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~-~~~~~~~vi~~~~~~~  140 (374)
                      |||.+..+..+++.+.++..+......+.....+|                  .+++++.+.. -++++++++.|++++.
T Consensus       145 YHG~t~~t~glt~~~~~k~~~~~~~~~~~~~~~Pdp~r~~~~~~~~~e~~d~~a~~l~d~i~~~~~~~vAafiaEtIqGv  224 (442)
T KOG1404|consen  145 YHGNTLYTLGLTGLSPWKQNFPGVASGVHHTMNPDPYRGIFGGSNEEEASDRYAKELEDLILYDGPETVAAFIAETIQGV  224 (442)
T ss_pred             ccCCchhhcccccCCcccccCCCCCCcccccCCCCcccccCCCCchhhhHHHHHHHHHHHHHhcCCCceeEEEeehhccC
Confidence            99999999999998888765544432332222221                  2455555554 3467999999999999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~  220 (374)
                      +|.+.+.+.++++..++|+++|.++|.||+++||||+|..|.++..++.||++|++|++|+|+ |+|+++.++++.+.+.
T Consensus       225 gG~v~~p~GYlka~~~~v~k~Ggl~IaDEVqtGfGRtG~~wgfe~h~v~PDIvTmAKgiGnG~-Pl~AVvtt~EIa~v~~  303 (442)
T KOG1404|consen  225 GGIVELPPGYLKAAYKVVRKRGGLFIADEVQTGFGRTGHMWGFESHGVVPDIVTMAKGIGNGF-PLGAVVTTPEIADVLN  303 (442)
T ss_pred             CccccCCchHHHHHHHHHHHcCCEEEehhhhhccccccccccccccCCCccHHHHHhhccCCC-cceeeecCHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999999999999998 9999999999999988


Q ss_pred             CCC-CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259          221 PGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----  295 (374)
Q Consensus       221 ~~~-~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  295 (374)
                      +.. +..||++++++++++.++|+.+++++++++....+.++.+.|.++.+.+| ++.++++.|+++++++-++..    
T Consensus       304 ~~~~~fnTyggnP~a~avg~aVL~Vikee~LqE~aa~vG~yl~~~l~~l~d~h~-iIGdVRG~GLm~GvE~V~dk~~~~p  382 (442)
T KOG1404|consen  304 QKSSHFNTYGGNPVACAVGLAVLKVIKEENLQENAAEVGSYLLEKLAALKDKHP-IIGDVRGRGLMLGVELVSDKSEPKP  382 (442)
T ss_pred             hccccccccCCCchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhhcCC-ceeecccceeEEEEEEecccCCCCC
Confidence            765 78899999999999999999999999999999999999999999999874 999999999999999844431    


Q ss_pred             --chhHHHHHHHHHHCCeEeccC--CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          296 --PVSAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       296 --~~~~~~~~~~l~~~Gi~v~~~--~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                        ......+.+.+.+.|+.+.-+  .++.+||+||++.|++|++.+++..
T Consensus       383 p~~~~~~~i~~~cke~Gvlvg~g~i~G~vfriaPPlciT~edi~f~~~~~  432 (442)
T KOG1404|consen  383 PATAEGAVIGEQCKELGVLVGKGGIHGNVFRIAPPLCITKEDIDFAVEYF  432 (442)
T ss_pred             cchHHHHHHHHHHHHhCeeeecccccceEEEecCCeeccHHHHHHHHHHH
Confidence              234567889999999999665  3679999999999999998777755

>PRK08593 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.3e-44  Score=341.70  Aligned_cols=341  Identities=30%  Similarity=0.534  Sum_probs=287.8

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC-C--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG-Y--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~-~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+..+ .+.++...+++++|++... .  ++++|++||++|++.|+++++.+.    |    +.+|+.++
T Consensus        65 ~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~SGseA~e~AiklAr~~t----g----r~~ii~~~  136 (445)
T PRK08593         65 EAIKAQADKFIHYTPAYMYHEPLVRLAKKLCELAPGDFEKRVTFGLSGSDANDGIIKFARAYT----G----RPYIISFT  136 (445)
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHhh----C----CCeEEEEC
Confidence            688999998877654 3568889999999999872 2  689999999999999999998653    3    47899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCCCH-----------------HHHHHHHHhc--CCcEEEEEEccc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGDI-----------------TALEKIFKES--GDQIAGFLFEPI  137 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~-----------------~~le~~l~~~--~~~~~~vi~~~~  137 (374)
                      ++|||.+..+.++++. ..++..+.|..+++..+++++.                 +++++.+.++  ++++++|++||+
T Consensus       137 ~~YHG~t~~als~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavI~EPv  216 (445)
T PRK08593        137 NAYHGSTYGSLSMSGISLNMRRKYGPLLPGFVHIPFPDKYRGMYEEPDANFVEEYLAPLKEMFEKYLPADEVACIVIETI  216 (445)
T ss_pred             CCcCCCcHHHHhhcCCCcccccCCCCCCCCcEEeCCCccccccccCCcHHHHHHHHHHHHHHHHhhcCCCceEEEEEccc
Confidence            9999999998888764 3344555555566655555421                 3455555432  367999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      ++++|.+.++++++++|.++|++||+++|+||+|+||+++|..++...+++.||++++||++++|+ |+|++++++++++
T Consensus       217 ~g~gG~~~~~~~yl~~l~~lc~~~g~llI~DEv~tg~GrtG~~~a~~~~gv~pDi~t~gK~l~~G~-p~gav~~~~~i~~  295 (445)
T PRK08593        217 QGDGGLLEPVPGYFEALYKFCREHGILFAVDDIQQGLGRTGKWSSISHFNITPDLMSFGKSLAGGM-PMSAIVGRKEIME  295 (445)
T ss_pred             cCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchHHHHHhcCCCCCEeeecccccCCc-ccEEEEEcHHHHh
Confidence            999999999999999999999999999999999999999999888888899999999999999998 9999999999999


Q ss_pred             hcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--
Q 017259          218 CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--  295 (374)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--  295 (374)
                      .+....+.+|+++++++++++.++++.++++++.++++++.+++++.|+++...+| .+.++++.|.++.+++..+..  
T Consensus       296 ~~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~gi~l~~~~~~~  374 (445)
T PRK08593        296 SLEAPAHLFTTGANPVSCAAALATIDMIEDESLLQRSAEKGEYARKRFDQWVSKYN-FVGDVRGYGLSIGIDIVSDKKLK  374 (445)
T ss_pred             hhccCCCCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-cEEEEeccceEEEEEEecCCCcC
Confidence            88765677899999999999999999998889999999999999999999887774 888999999999998853210  


Q ss_pred             ---chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          296 ---PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       296 ---~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                         ......++..|+++||++.+...+.+|+.|++.+|++|+++++++|+++++ .+....
T Consensus       375 ~~~~~~~~~~~~~~~~~Gv~~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~-~~~~~~  434 (445)
T PRK08593        375 TRDNEAALKICNYCFEHGVVIIAVAGNVLRFQPPLVITYEQLDTALNTIEQAFT-ALEAGK  434 (445)
T ss_pred             CCcHHHHHHHHHHHHHCCeEEeccCCCEEEEECCCccCHHHHHHHHHHHHHHHH-HHhccc
Confidence               123567899999999999876678999999999999999999999999998 765433

>PRK06105 aminotransferase; Provisional

Probab=100.00  E-value=2.3e-44  Score=342.69  Aligned_cols=343  Identities=29%  Similarity=0.440  Sum_probs=287.1

Q ss_pred             ChHHHHHHHhccccC--cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|+.++++++.+..  +.+.++...+++++|++..  +.++++|++||++|++.|+++++.+. ..+| ..++.+|+.+
T Consensus        70 ~~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseAve~AlKlar~~~-~~~g-~t~r~~il~~  147 (460)
T PRK06105         70 VEAAARQMKKLPFYHTFSHKSHGPVIDLAEKLVAMAPVPMSKVFFTNSGSEANDTVVKLVWYYN-NALG-RPEKKKIISR  147 (460)
T ss_pred             HHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEe
Confidence            368899998876533  2356888899999999987  35799999999999999999998653 2233 2346899999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHhc-CCcEEEEEEccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPI  137 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~~-~~~~~~vi~~~~  137 (374)
                      ..+|||.+..+.++++.+..+..+.+...++..+++++                  .+++++.+.+. ++++++|++||+
T Consensus       148 ~~~yHG~t~~a~s~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iAavIvEPi  227 (460)
T PRK06105        148 QRGYHGVTIASASLTGLPNNHRSFDLPLDRILHTGCPHYYRFGLPGESEEAFATRLANELEALILAEGPDTIAAFIGEPV  227 (460)
T ss_pred             cCccCCcchhheeccCCcccccccCCCCCCCEEcCCCcccccccCCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEccc
Confidence            99999999998888776655555655545555554432                  35678777543 468999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      ++.+|.+.++++++++|.++|++||+++|+||+++|||++|..|+++++++.||++++||+++||++|+|++++++++++
T Consensus       228 qg~gG~~~~~~~yl~~lr~lc~~~~~llI~DEv~tG~GRtG~~f~~~~~~v~PDi~~~gK~lggG~~P~~av~~~~~i~~  307 (460)
T PRK06105        228 MGAGGVIVPPKTYWEKIQAVLRKYDILLVADEVICGFGRTGNMFGCETFGIKPDILVMSKQLSSSYQPLSAVLMNEKVYD  307 (460)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCeEEEeccccCCCcCchhhhHHhcCCCCCeeeeecccccCcccceEEEEcHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999998449999999999988


Q ss_pred             hcCCC-------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          218 CIQPG-------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       218 ~~~~~-------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      .+...       .+++||++++++++++.++|+.+.++++.+++++..+++++.|+++ .++ +.+.++++.|.++.+++
T Consensus       308 ~~~~~~~~~~~~~h~~T~~gnpl~~aaa~a~L~~i~~~~l~~~v~~~g~~l~~~L~~l-~~~-~~v~~vrG~Gl~~gie~  385 (460)
T PRK06105        308 PIADESGKIGTFGHGFTASGHPVAAAVALENLAIIEERDLVGNAAERGARLQARLRAL-ADH-PLVGEVRGVGLIAAVEL  385 (460)
T ss_pred             HHhcccccCcccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHh-hcC-CCeEEEEecceEEEEEE
Confidence            77531       3678999999999999999999998899999999999999999998 666 48889999999999988


Q ss_pred             ccCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          291 DKTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       291 ~~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..+..        ......+...++++|+++.+. ++.+|++|+++.|++|+++++++|.++++ ++
T Consensus       386 ~~~~~~~~~~~~~~~~a~~i~~~~~~~Gvl~~~~-g~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~  450 (460)
T PRK06105        386 VADKATKTPFEPPGKVGARANAAAHEHGVISRAM-GDTLAFCPPLIITAAQVDEMVDRFGRALD-DV  450 (460)
T ss_pred             ecCcccCCCCCchhHHHHHHHHHHHHCCeEEEec-CCEEEEECCCccCHHHHHHHHHHHHHHHH-HH
Confidence            43211        012357888899999999886 46999999999999999999999999998 55

>PRK07036 hypothetical protein; Provisional

Probab=100.00  E-value=3.2e-44  Score=341.94  Aligned_cols=342  Identities=26%  Similarity=0.456  Sum_probs=284.5

Q ss_pred             hHHHHHHHhccccCcC--CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRA--FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+++++.++.+.++.  +.++...+++++|.+..  +.++++|++|||+|++.|+++++.+. ..+| ..++.+|+.+.
T Consensus        74 ~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~-~~~g-~t~r~~Ii~~~  151 (466)
T PRK07036         74 DAIADQARRLPYYTPFGDMTNAPAAELAAKLAELAPGDLNHVFLTTGGSTAVDSALRFVHYYF-NVRG-RPAKKHIITRG  151 (466)
T ss_pred             HHHHHHHHhCcccccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHHH-HhcC-CCCccEEEEEc
Confidence            6888999887665442  56888999999999977  36799999999999999999998764 2233 23458999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHh-cCCcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE-SGDQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~-~~~~~~~vi~~~~~~  139 (374)
                      ++|||.+..+.++++.+.++..|.+....+..++.++                 .+.+++.+.. .++++++|++||+++
T Consensus       152 ~~YHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~iAavi~EPv~g  231 (466)
T PRK07036        152 DAYHGSTYLTASLTGKAADRTEFDYASDLVHHLSSPNPYRRPAGMSEAAFCDFLVDEFEDKILSLGADNIAAFIAEPILG  231 (466)
T ss_pred             CccCCccHhhhcccCCCcccccccCCCCCcEEecCCcccccccCCChHHHHHHHHHHHHHHHHHcCCCceEEEEEeCCcC
Confidence            9999999998888887766666665544444433321                 2345566653 457899999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccc-cCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~-~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      ++|.+.++++++++|.++|++||+++|+||+++||||+|..+.++ .+++.||+++++|+++||++|+|.+++++++++.
T Consensus       232 ~gG~~~p~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~~~~~~~gv~PDivt~gK~l~gG~~Pi~av~~~~~i~~~  311 (466)
T PRK07036        232 SGGVIVPPPGYHARMREICRRYDILYISDEVVTGFGRLGHFFASEAVFGIQPDIITFAKGLTSGYQPLGAVIISERLLDV  311 (466)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEeechhCCCcCchhhhhhhhcCCCCCEEEEccccccCccccEEEEEcHHHHHH
Confidence            999999999999999999999999999999999999999888887 6899999999999999995599999999999887


Q ss_pred             cCC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259          219 IQP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       219 ~~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  291 (374)
                      +..       ..+++||++++++++++.++++.++++++.+++++.++++++.|+.+ .++ +.+.++++.|.++.+++.
T Consensus       312 ~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~Le~i~~~~l~~~~~~~g~~l~~~L~~l-~~~-~~v~~vrG~Gl~~~ve~~  389 (466)
T PRK07036        312 ISGPNAKGNVFTHGFTYSGHPVACAAALKNIEIMEREGLCEHVREVGPYFEERLASL-REL-PLVGDVRGDHLMACVECV  389 (466)
T ss_pred             HhcccCcCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHh-ccC-CCEEEEEeeceEEEEEEc
Confidence            752       24667999999999999999999988899999999999999999876 455 488899999999999984


Q ss_pred             cCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          292 KTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       292 ~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++..        ......+.+.|+++|+++.+.+ +.+|++|++++|++|+++++++|.++++ ++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~-~~~~l~Ppl~it~~~id~~~~~l~~al~-~~  453 (466)
T PRK07036        390 ADKGSKALLPEDIAIGQRIDRHCQERGLLVRPLE-HLCVLSPPLIITRAQIDEIVAILRAAIE-ET  453 (466)
T ss_pred             cCccccCCCCchhHHHHHHHHHHHHCCcEEeecC-CEEEEeCCCcCCHHHHHHHHHHHHHHHH-HH
Confidence            3211        0124578889999999998764 6899999999999999999999999987 55

>PRK04013 argD acetylornithine/acetyl-lysine aminotransferase; Provisional

Probab=100.00  E-value=1.6e-44  Score=332.77  Aligned_cols=314  Identities=36%  Similarity=0.650  Sum_probs=279.1

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      ++|+.++++++.+..+.+.++...+++++|+++.+.+++++++|||+|++.|+++++.+    +|    +++|+.++.+|
T Consensus        46 ~~ai~~ql~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~SGseA~e~Alklar~~----~g----r~~Ii~~~~sy  117 (364)
T PRK04013         46 VEEMSEQLEKLVVAGPMFEHEEKEEMLEELSKWVNYEYVYMGNSGTEAVEAALKFARLY----TG----RKEIIAMTNAF  117 (364)
T ss_pred             HHHHHHHHHhcCCccCCcCCHHHHHHHHHHHhhcCCCEEEEeCchHHHHHHHHHHHHHH----hC----CCEEEEECCcc
Confidence            36889999988777666788999999999999888899999999999999999999865    23    48999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ||.+..+.++++.+.++.++.|...++..++++|++.+++.+.   +++++++++|+++.+|...++++++++|.++|++
T Consensus       118 HG~t~~~ls~~~~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~aAvivEpi~g~gG~~~~~~~yl~~lr~lc~~  194 (364)
T PRK04013        118 HGRTMGALSATWKPKYREDFEPLVPGFKHIPFNDVEAAKEAIT---KETAAVIFEPIQGEGGIVPAKEEFVKTLRDLTED  194 (364)
T ss_pred             ccCchhhccCCCCcccccCCCCCCCCcEEecCCCHHHHHHHhc---CCcEEEEEcCCcCCCCCcCCCHHHHHHHHHHHHH
Confidence            9999999988888888888888888889999999999998886   5899999999999999999999999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      ||+++|+||+++|+ |+|..+.++++++.||+++++|++++|+ |+|.++.++++    ....+++||++++++++++.+
T Consensus       195 ~gillI~DEv~tG~-RtG~~~a~~~~gv~PDiv~~gK~lggG~-P~~a~~~~~~~----~~~~~~~T~~gnp~~~aaa~a  268 (364)
T PRK04013        195 VGALLIADEVQSGL-RTGKFLAIEHYKVEPDIVTMGKGIGNGV-PVSLTLTNFDV----ERGKHGSTFGGNPLACKAVAV  268 (364)
T ss_pred             cCCEEEEechhhcC-CCCchhHHHhcCCCCCEEEecccccCCc-eeEEEEecccc----cCCCcCCCCCcCHHHHHHHHH
Confidence            99999999999999 9999999999999999999999999998 99999888765    234578899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      .++.++++++.++.++.       ++++. .  +.+.++++.|.++.+++..     ....+.+.++++|+++.+.+.+.
T Consensus       269 ~l~~i~~~~l~~~~~~~-------l~~l~-~--~~v~~vRG~Gl~~gve~~~-----~~~~i~~~~~~~Gll~~~~g~~v  333 (364)
T PRK04013        269 TLRILRRERLVEKAGEK-------FIEIK-G--ERVVTTRGRGLMIGIVLKK-----PVGKYVEELQNRGYLVHTAGQRV  333 (364)
T ss_pred             HHHHHHhccHHHHHHHH-------HHHhc-c--CcceeeeeCcEEEEEEeCC-----cHHHHHHHHHhCCcEEeeCCCCE
Confidence            99999988888887664       22332 1  3677899999999999964     35678999999999998876789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+.||+..|++|+++++++|+++++
T Consensus       334 lr~~Ppl~it~~~i~~~~~~l~~~l~  359 (364)
T PRK04013        334 IRLLPPLIISKDTMEEAKSAIEGVIN  359 (364)
T ss_pred             EEEeCCcccCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987

>PRK13360 omega amino acid--pyruvate transaminase; Provisional

Probab=100.00  E-value=4e-44  Score=339.40  Aligned_cols=340  Identities=32%  Similarity=0.508  Sum_probs=284.9

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .+.++...+++++|++..  +.++++|++||++|++.|+++++.+. ..+| ..++.+|+.+.+
T Consensus        69 ~ai~~ql~~l~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~AlklAr~~~-~~~g-~~~r~~ii~~~~  146 (442)
T PRK13360         69 EAVRAQAGELDYAPAFQMGHPKAFELANRIAEIAPGGLNHVFFTNSGSESVDTALKIALAYH-RARG-EGSRTRLIGRER  146 (442)
T ss_pred             HHHHHHHHhCCCcccCCcCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEEcC
Confidence            688899988766554 356888899999999986  46899999999999999999998764 2223 234589999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHhc-CCcEEEEEEccccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPIQG  139 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~~-~~~~~~vi~~~~~~  139 (374)
                      +|||.+..+.++++....+..+.+....+..+|+..                  .+++++.+..+ ++++++|++||+++
T Consensus       147 ~yHG~t~gals~tg~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~aavivEpi~g  226 (442)
T PRK13360        147 GYHGVGFGGISVGGIVPNRKAFGALLPGVDHLPHTLDLARNAFSKGQPEHGAELADELERLVTLHDASTIAAVIVEPVAG  226 (442)
T ss_pred             CcCCccHhhhhccCChhhhhccCCCCCCCEEeCCCchhhccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccC
Confidence            999999998888887766666665555555554431                  45788888754 36899999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      .+|.+.++++++++|.++|++||+++|+||+++|+|++|..++++++++.||++++||++++|++|+|.+++++++++.+
T Consensus       227 ~~G~~~~~~~fl~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDivt~gK~l~gG~~P~gav~~~~~i~~~~  306 (442)
T PRK13360        227 STGVLIPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAPFAAQYFGVTPDLLTCAKGLTNGAIPMGAVFVSSEIHDAF  306 (442)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCCCccchhhhhcCCCCceeeeeeccccCccceEEEEEcHHHHHHh
Confidence            99999999999999999999999999999999999999999898999999999999999998844999999999998876


Q ss_pred             CCC-------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259          220 QPG-------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK  292 (374)
Q Consensus       220 ~~~-------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  292 (374)
                      ...       .+++||++++++++++.++++.++++++.++.+++.+++++.|+++.. + +.+.++++.|.++.+.+..
T Consensus       307 ~~~~~~~~~~~~~~T~~g~pl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~l~~l~~-~-~~v~~vrG~Gl~~~~~l~~  384 (442)
T PRK13360        307 MQGPEAGIEFFHGYTYSGHPLACAAALATLDLYEREGLLTRAARLAPYWEDALHSLRD-A-PHVIDIRNLGLVGAVELAP  384 (442)
T ss_pred             hcCCccccccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-C-CCeeeeeccceEEEEEEec
Confidence            532       366799999999999999999998889999999999999999998753 4 3677888899998887743


Q ss_pred             CCC--chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          293 TAL--PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       293 ~~~--~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ...  .....++...|.++||++.+. ++.+|++|++.+|++|+++++++|+++++
T Consensus       385 ~~~~~~~~~~~~~~~l~~~Gvl~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~  439 (442)
T PRK13360        385 RDGKPGKRAYEVFLKCFEKGLMIRYT-GDILALSPPLIIEEAQIDELFDILAQALK  439 (442)
T ss_pred             CCCCcchhHHHHHHHHHHCCcEEEec-CCEEEEeCCCccCHHHHHHHHHHHHHHHH
Confidence            211  113567888999999999876 46899999999999999999999999987

>PRK06541 hypothetical protein; Provisional

Probab=100.00  E-value=4.1e-44  Score=340.65  Aligned_cols=342  Identities=28%  Similarity=0.471  Sum_probs=286.3

Q ss_pred             ChHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            1 MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      ++|++++++++.+... .+.++...+++++|++..  +.++++|++||++|++.|+++++.++ ...| .+++.+|+.+.
T Consensus        74 ~~Av~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseAve~AlklAr~~~-~~~g-~~~r~~ii~~~  151 (460)
T PRK06541         74 AEAAAKQAGTLAFFPLWSYAHPPAIELAERLAALAPGDLNRVFFTTGGSEAVESAWKLAKQYF-KLTG-KPGKHKVISRA  151 (460)
T ss_pred             HHHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCcCEEEEcCCcHHHHHHHHHHHHHHH-HhcC-CCCccEEEEEc
Confidence            3688999998766544 467888999999999976  36799999999999999999998764 1233 33468999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHh-cCCcEEEEEEcccc
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKE-SGDQIAGFLFEPIQ  138 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~-~~~~~~~vi~~~~~  138 (374)
                      ++|||.+..+.++++.+.+...+.|..+++..+++++                  ++.+++.+.. +++++++|+++|++
T Consensus       152 ~~yHG~t~~a~s~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~Aavi~EPv~  231 (460)
T PRK06541        152 IAYHGTTQGALAITGLPAFKAPFEPLVPGGFRVPNTNFYRAPELGDDPEAFGRWAADRIEEAIEFEGPDTVAAVFLEPVQ  231 (460)
T ss_pred             CcccCcchhhhcCcCChhhccccCCCCCCcEEeCCCccccccccCCCHHHHHHHHHHHHHHHHHhcCCCCEEEEEECCcc
Confidence            9999999999988887766666666656655554332                  2567777764 34689999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +++|.+.++++++++|.++|++||+++|+||+|+|||++|..++..++++.||++++||++++|++|+|++++++++++.
T Consensus       232 g~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tGfGR~G~~~a~~~~gv~PDivt~gK~l~~G~~pigav~~~~~i~~~  311 (460)
T PRK06541        232 NAGGCFPPPPGYFERVREICDRYDVLLVSDEVICAFGRLGEMFGCERFGYVPDIITCAKGITSGYSPLGAMIASDRLFEP  311 (460)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCchhhhhhhcCCCCCEEEecccccCCccceeEEEEcHHHHHH
Confidence            99999999999999999999999999999999999999999888888999999999999999997799999999998887


Q ss_pred             cCCC----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          219 IQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       219 ~~~~----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      +...    .++.|++++++++++++++++.+.++++.++++++++++++.|+++.. + +.+..+++.|.++.+++.++.
T Consensus       312 ~~~~~~~~~~~~T~~gnp~~~aaala~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~-~~v~~vrg~Gl~~~ie~~~~~  389 (460)
T PRK06541        312 FLDGPTMFLHGYTFGGHPVSAAVALANLDIFEREGLLDHVRDNEPAFRATLEKLLD-L-PIVGDVRGDGYFYGIELVKDK  389 (460)
T ss_pred             hhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhhc-C-CCeEEEEecceEEEEEEecCc
Confidence            7532    356799999999999999999998888999999999999999998865 5 477889999999999984321


Q ss_pred             C-----c-h-----hHHHHHHHHHHCCeEeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 L-----P-V-----SAYDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~-----~-~-----~~~~~~~~l~~~Gi~v~~~--~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .     . .     ....+.+.|+++||++.+.  +.+.+|++|++.+|++|+++++++|+++++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~~~~~~~g~~~lrl~Ppl~~t~~~id~~~~~l~~~l~  454 (460)
T PRK06541        390 ATKETFTDDESERLLRGFLSPALFEAGLYCRADDRGDPVVQLAPPLISGQEEFDEIEQILRSVLT  454 (460)
T ss_pred             ccccCCcchhhhhhHHHHHHHHHHhCCeEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            0     0 0     1135778899999999874  457899999999999999999999999987

>PRK09221 beta alanine--pyruvate transaminase; Provisional

Probab=100.00  E-value=3.9e-44  Score=339.80  Aligned_cols=342  Identities=31%  Similarity=0.500  Sum_probs=287.1

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .+.++...+++++|++..  +.++++|++||++|++.|+++++.++ ..+| .+++.+|+.+.+
T Consensus        72 ~ai~~ql~~l~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~~-~~~g-~~~r~~ii~~~~  149 (445)
T PRK09221         72 EAVARQAATLDYAPAFQMGHPLAFELAERLAELAPGGLDHVFFTNSGSESVDTALKIALAYH-RARG-QGTRTRLIGRER  149 (445)
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECC
Confidence            688899988766554 356888899999999987  46799999999999999999998764 2233 234589999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKESG-DQIAGFLFEPIQG  139 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~~~-~~~~~vi~~~~~~  139 (374)
                      +|||.+..+.++++.+..+..|.+...++..++++.                  .+++++.++.++ +++++|++||+++
T Consensus       150 ~yHG~t~gals~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~Epv~g  229 (445)
T PRK09221        150 GYHGVGFGGISVGGIVNNRKMFGGLLPGVDHLPHTLDLPENAFSKGQPEHGAELADDLERLVALHDASTIAAVIVEPMAG  229 (445)
T ss_pred             CcCccchhhhccCCChhhhhccCCCCCCCeEeCCCccccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEecccC
Confidence            999999998888877666666666555555554431                  357788887653 6899999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      .+|.+.++++++++|.++|++||+++|+||+++|||++|..+.++.+++.||++++||++++|+.|+|.+++++++++.+
T Consensus       230 ~~G~~~~~~~yl~~l~~lc~~~g~llI~DEV~tG~GRtG~~~~~~~~gv~PDi~~~gK~l~gG~~Pi~av~~~~~i~~~~  309 (445)
T PRK09221        230 SAGVLVPPKGYLQRLREICDKHGILLIFDEVITGFGRLGAAFAAERFGVTPDIITFAKGLTNGAIPMGAVIASDEIYDAF  309 (445)
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEeehhhCCCcCchhhHHHhcCCCCCEEEeccccccCcccceeeEEcHHHHHhh
Confidence            99999999999999999999999999999999999999999899999999999999999998854999999999988877


Q ss_pred             CC-------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259          220 QP-------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK  292 (374)
Q Consensus       220 ~~-------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  292 (374)
                      ..       ..+++||++++++++++.++++.++++++.++.+++.+++++.|+++. .+ +.+.++++.|.+..+++..
T Consensus       310 ~~~~~~~~~~~~~~T~~~~pl~~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~l~~l~-~~-~~v~~vrg~Gl~~~v~~~~  387 (445)
T PRK09221        310 MQGPEYAIEFFHGYTYSAHPVACAAGLATLDIYREEDLFERAAELAPYFEDAVHSLK-GL-PHVIDIRNIGLVAGIELAP  387 (445)
T ss_pred             ccCcccccccccccCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhhc-cC-CCEEEEecCceEEEEEEec
Confidence            53       135679999999999999999999888999999999999999999874 34 3677889999999988853


Q ss_pred             CCC--chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          293 TAL--PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       293 ~~~--~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...  .....++.+.|+++|+++.+. ++.+|++|++.+|++|+++++++|+++++ ++
T Consensus       388 ~~~~~~~~~~~~~~~~~~~Gv~~~~~-~~~lr~~Ppl~~t~~eid~~~~~l~~~l~-~~  444 (445)
T PRK09221        388 RPGAPGARGYEAFMKCFEKGLLVRYT-GDTIALSPPLIIEKAQIDELVDALGDALR-AV  444 (445)
T ss_pred             ccccccchHHHHHHHHHHCCeEEeec-CCEEEEECCccCCHHHHHHHHHHHHHHHH-hh
Confidence            211  113467889999999999876 57899999999999999999999999997 54

>PRK05964 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=3.4e-44  Score=340.33  Aligned_cols=342  Identities=31%  Similarity=0.518  Sum_probs=287.2

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .++++...+++++|++..  +.++++|++||++|++.|+++++.+. ..+| ..++.+|+.+++
T Consensus        65 ~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~v~f~~sGseA~e~A~klar~~~-~~~~-~~~r~~ii~~~~  142 (423)
T PRK05964         65 QAIREQLDRLDHVIFAGFTHEPAERLAQRLVALTPGGLDHVFFSDSGSVAVEVALKMALQYW-RNRG-EPGRSRFLSLRG  142 (423)
T ss_pred             HHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEEcC
Confidence            688899988776544 466888899999999987  46899999999999999999999774 2233 235689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCC--C-----HHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG--D-----ITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGY  150 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--d-----~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~  150 (374)
                      +|||.+..+.++++...+...+.+...++..++++  |     ++++++.+.++++++++++++| +++.+|...+++++
T Consensus       143 ~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~l~~~l~~~~~~iaavi~Ep~i~~~gG~~~~~~~~  222 (423)
T PRK05964        143 GYHGDTIGTMSVGDRGGMHALYTPLLFEQVTAPFPPDGYEQATLDALEALLEKHAGEIAAFIVEPLVQGAGGMLFYDPRY  222 (423)
T ss_pred             CcCCccHHHHhcCCCccccccccCcCCCCEEeCCCcchhHHHHHHHHHHHHHhCCCcEEEEEEecccccCCCcccCCHHH
Confidence            99999999888887766665565555555555553  4     7888888887667899999999 69999999999999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC------CC
Q 017259          151 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EH  224 (374)
Q Consensus       151 l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------~~  224 (374)
                      +++|.++|++||+++|+||+|+|++++|..++++.+++.||++++||+++||++|+|++++++++++.+...      .+
T Consensus       223 l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~v~pDi~~~~K~l~gG~~p~~av~~~~~i~~~~~~~~~~~~~~~  302 (423)
T PRK05964        223 LAELRRICDRHGVLLIFDEIATGFGRTGTLFACEQAGVSPDIMCLSKGLTGGYLPLAATLCTAEIFEAFYSDDRAKAFMH  302 (423)
T ss_pred             HHHHHHHHHHcCCEEEEechhhCCCcCcchhHHHhcCCCCCeeeeehhhhcCcccceEEEEcHHHHHhhhcCCccccccc
Confidence            999999999999999999999999999988888888999999999999998833999999999998887532      35


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +.||++++++++++.++++.++++++.++++++.+++++.|+++.. +| .+...++.|.++.+.+.+.........+.+
T Consensus       303 ~~T~~~np~~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~-~~-~i~~vrg~Gl~~~i~l~~~~~~~~~~~l~~  380 (423)
T PRK05964        303 SPSYTANPLACAAANASLDLFEDEPVLERVAALSAGLAEGLEPFRD-LP-GVADVRVLGAIGAVELDRPVLERDGPALRA  380 (423)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhcc-CC-CeEEeecccEEEEEEeccCcchhHHHHHHH
Confidence            6788999999999999999998888999999999999999988743 43 556678889999988864310012668999


Q ss_pred             HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|.++||++.+. .+.+|++|++.+|++|+++++++|+++++ ++
T Consensus       381 ~l~~~Gv~v~~~-~~~lR~~p~l~~t~edId~~v~~l~~al~-~~  423 (423)
T PRK05964        381 FALERGVLLRPL-GNTIYLMPPYIITAEELDRITDAIVEVAD-EL  423 (423)
T ss_pred             HHHHCCeEEEec-CCEEEEeCCcccCHHHHHHHHHHHHHHHh-hC
Confidence            999999999886 47899999999999999999999999997 53

>PRK06777 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=6e-44  Score=337.43  Aligned_cols=335  Identities=35%  Similarity=0.603  Sum_probs=283.6

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+... .++++...+++++|++...   .++++|++|||+|++.|+++++.+.    |    +.+|+.++
T Consensus        63 ~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~  134 (421)
T PRK06777         63 AAVRQQLDQFTHTAYQIVPYASYVTLAERINALAPIDGPAKTAFFTTGAEAVENAVKIARAYT----G----RPGVIAFG  134 (421)
T ss_pred             HHHHHHHhhcccccccccCChHHHHHHHHHHHhCCCCCCceEEEeCCcHHHHHHHHHHHHHhh----C----CCeEEEEc
Confidence            688999998776543 3567888999999999763   5799999999999999999998653    3    47899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCCC----------HHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD----------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d----------~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+.++++. ..++..+.|...++..+++++          ++.+++.+++  ++++++++++||+++++|..
T Consensus       135 ~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~Epv~~~~G~~  214 (421)
T PRK06777        135 GAFHGRTLLTMALTGKVAPYKVGFGPFPGSIFHALYPNELHGVSVEEALSSVERLFKADIAPDQVAAILLEPIQGEGGFN  214 (421)
T ss_pred             CCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCccccCcCHHHHHHHHHHHHHhccCCCceEEEEECCccCCCCCc
Confidence            9999999998887764 335555666555566555543          5667887764  45789999999999999988


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||+++|+||+|+|++++|..++...+++.||++++||++++|+ |+|++++++++++.+....+
T Consensus       215 ~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~g~~~~~~~~~~~pDiv~~sK~l~~G~-pigav~~~~~i~~~~~~~~~  293 (421)
T PRK06777        215 VAPPEFMSALRTLCDEHGILLIADEVQTGFARTGKLFAMEYYDVKPDLITMAKSLGGGM-PISAVVGRAEVMDAPAPGGL  293 (421)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEechhhCCccCCchhhhhhcCCCCCEEeeehhhcCCC-ceEEEEEcHHHHhccCCCCC
Confidence            88999999999999999999999999999999998888888899999999999999998 99999999999999887778


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----chhHH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAY  300 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~  300 (374)
                      ..||++++++++++.++|+.++++++.++++++.+++++.|+++...+| .+..+++.|.++.+.+.....    .....
T Consensus       294 ~~T~~~~p~~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrg~G~~~~i~~~~~~~~~~~~~~~~  372 (421)
T PRK06777        294 GGTYAGNPLAVAAALAVLDVIAEEKLCQRALILGAHLVEVLEKAKASCP-AIVDIRARGSMVAVEFNDPQTGKPSPEFTR  372 (421)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEecCceEEEEEEEecCccCCccHHHHH
Confidence            8899999999999999999988889999999999999999999877664 777889999999987743211    11245


Q ss_pred             HHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.|+++||++.+++  ++++||.|++..+++++++++++|++++.
T Consensus       373 ~l~~~~~~~Gv~i~~~~~~g~~lr~~ppl~i~~~~i~~~~~~l~~~l~  420 (421)
T PRK06777        373 QYQRQALEEGLLLLSCGVHGNVIRFLYPLTIPDAQFSKALNILTRLLA  420 (421)
T ss_pred             HHHHHHHhCCeEEeecCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            56777789999998864  57999999999999999999999998874

>PRK07480 putative aminotransferase; Validated

Probab=100.00  E-value=4.3e-44  Score=340.16  Aligned_cols=342  Identities=29%  Similarity=0.452  Sum_probs=281.2

Q ss_pred             hHHHHHHHhccccCc--CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR--AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+...  .+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ ..+| ..++.+|+.+.
T Consensus        73 ~Ai~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~-~~~g-~~~r~~ii~~~  150 (456)
T PRK07480         73 DAAARQMRELPYYNTFFKTTHPPAIELAAKLAEVAPPGFNHVFFTNSGSEANDTVLRMVRHYW-ALKG-KPQKKVIISRK  150 (456)
T ss_pred             HHHHHHHHhcCCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEEC
Confidence            688899998765443  356889999999999987  46799999999999999999998764 2233 23458999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCC---------------C--HHHHHHHHH-hcCCcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---------------D--ITALEKIFK-ESGDQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------------d--~~~le~~l~-~~~~~~~~vi~~~~~~  139 (374)
                      .+|||.+..+.++++...+...+.+..+++..++++               +  .+.+++.+. ..++++++|++||+++
T Consensus       151 ~~yHG~tl~a~s~~g~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~vAAvi~EPiqg  230 (456)
T PRK07480        151 NGYHGSTVAGASLGGMKYMHEQGDLPIPGIVHIDQPYWFGEGGDMTPEEFGLAAARQLEAKILELGADNVAAFIGEPIQG  230 (456)
T ss_pred             CCcCCcchhhhhccCChhhhcccCCCCCCCeecCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCcEEEEEEccccC
Confidence            999999988888876554444443322334333321               1  256665554 3446899999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      .+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.+
T Consensus       231 ~gG~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~gG~~Pi~av~~~~~i~~~~  310 (456)
T PRK07480        231 AGGVIIPPATYWPEIQRICRKYDILLVADEVICGFGRTGEWFGSQHFGIKPDLMTIAKGLTSGYIPMGAVGVGDRVAEVL  310 (456)
T ss_pred             CCCCccCCHHHHHHHHHHHHHcCCEEEEechhhCCCcCcchhhhhhcCCCCCeeeeehhhccCCccceEEEEcHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999966999999999998887


Q ss_pred             C--C--CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHH-HHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          220 Q--P--GEHGSTFGGNPLASAVAIASLDVIRDEKLAERS-AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       220 ~--~--~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      .  .  ..+++||++++++++++.++|+.++++++.++. ++..+++++.|+++ .++ +.+.++++.|.++.+++.++.
T Consensus       311 ~~~~~~~~~~~T~~gnpl~~Aaa~a~L~~l~~~~l~~~~~~~~g~~l~~~l~~l-~~~-~~i~~vrG~Glm~gie~~~~~  388 (456)
T PRK07480        311 IEEGGEFNHGFTYSGHPVAAAVALANLRILRDEGIVERVRDDTGPYLQKRLREL-ADH-PLVGEVRGVGLVGAIELVKDK  388 (456)
T ss_pred             hcCCCCcccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHh-hcC-CCeeeEEeecceEEEEEeccc
Confidence            3  2  247789999999999999999999888999999 59999999999986 445 478889999999999984321


Q ss_pred             C--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 L--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .        ......+.+.|+++|+++.+. .+.+|++|++.+|++|+++++++|.++++ ++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-~~~l~~~Ppl~it~~eid~~~~~l~~al~-~~  449 (456)
T PRK07480        389 ATRERFEAGGGVGTICRDHCFANGLIMRAV-GDRMIISPPLVITHAEIDELVEKARKALD-AT  449 (456)
T ss_pred             cccccCcchhhHHHHHHHHHHHCCcEEeec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            1        001356778899999999875 47899999999999999999999999998 65

>PRK06938 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=4.4e-44  Score=340.47  Aligned_cols=334  Identities=31%  Similarity=0.494  Sum_probs=281.4

Q ss_pred             hHHHHHHHhcc-ccCcCCCCCcHHHHHHHHhcccCC-----CeEEec-CChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGY-----DMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~-~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +|+++++++.. +....+.++...+++++|.+....     ++++|+ +|||+|++.|+++++.+.        ++.+|+
T Consensus        86 ~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~~~v~f~~~SGSEAve~AlklAr~~t--------gr~~ii  157 (464)
T PRK06938         86 EAIQQVLADELPLHTLDLTTPVKDQFVQDLFASLPEAFAREAKIQFCGPTGTDAVEAALKLVKTAT--------GRSTVL  157 (464)
T ss_pred             HHHHHHHHhhhcccccccCCHHHHHHHHHHHHhCcccccccceEEEeCCCcHHHHHHHHHHHHHhh--------CCCeEE
Confidence            67888887533 332346688899999999987631     366565 799999999999998652        348999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCC-----------------CHHHHHHHHHhcC---CcEEEEEE
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKESG---DQIAGFLF  134 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~~~~---~~~~~vi~  134 (374)
                      .+.++|||.+..+.++++...++..+.+...++..++++                 +++.+++.+.+..   +++++|++
T Consensus       158 ~~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~  237 (464)
T PRK06938        158 SFQGGYHGMSQGALSLMGNLGPKKPLGALLPGVQFLPYPYDYRCPFGLGGEAGVRANLHYLENLLDDPESGVVLPAAVIL  237 (464)
T ss_pred             EECCccCCccHHHHhhcCCccccccCCCCCCCcEEeCCCccccccccCchhhHHHHHHHHHHHHHHhhccCCCceEEEEE
Confidence            999999999999998887666666666655555555543                 1566788886432   47999999


Q ss_pred             ccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHH
Q 017259          135 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKE  214 (374)
Q Consensus       135 ~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~  214 (374)
                      ||+++.+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||+ |+|.++++++
T Consensus       238 EPiqg~gG~~~p~~~yl~~lr~lc~~~giLlI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gKglggG~-PlsAv~~~~~  316 (464)
T PRK06938        238 EVVQGEGGVIPAPIEWLRGLRRITEEAGIPLIVDEIQSGFGRTGKMFAFEHAGIIPDVVVLSKAIGGSL-PLAVVVYREW  316 (464)
T ss_pred             ccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcHHHHHHhcCCCCCEEEeeccccCCC-ceEEEeehhH
Confidence            999999999999999999999999999999999999999999999999999999999999999999998 9999999888


Q ss_pred             HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          215 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      + +.+....+++||++++++++++++.++.++++++.++.++..+++++.|+++..++| .+.++++.|.++.+++.++.
T Consensus       317 ~-~~~~~~~~~~T~~gnpla~Aaa~a~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~VrG~Glm~gie~~~~~  394 (464)
T PRK06938        317 L-DTWQPGAHAGTFRGNQMAMAAGSATLRYIKEHRLAEHAAAMGERLREHLRQLQRDYP-QLGDVRGRGLMLGVEIVDPQ  394 (464)
T ss_pred             h-hccCCCCCCCCCCcCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEeccCc
Confidence            5 666666688999999999999999999998889999999999999999999987774 88999999999999984321


Q ss_pred             C-----------chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 L-----------PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~-----------~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .           ......+.+.|+++|+++.+.+  .+.+|+.|++.+|++|++++++++++++.
T Consensus       395 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~g~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~  459 (464)
T PRK06938        395 GEPDALGHPPANGELASLIQRECLRRGLILELGGRHGSVVRFLPPLIITAEQIDEVAEIFAEAVA  459 (464)
T ss_pred             ccccccccCCccHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence            0           0124568889999999998753  58999999999999999999999999987

>TIGR00700 GABAtrnsam 4-aminobutyrate aminotransferase, prokaryotic type

Probab=100.00  E-value=5.2e-44  Score=338.52  Aligned_cols=335  Identities=33%  Similarity=0.547  Sum_probs=281.9

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+... ..+++...+++++|++..   +.++++|++|||+|++.|+++++.+.    |    +.+|+.+.
T Consensus        56 ~a~~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~  127 (420)
T TIGR00700        56 DAVRTQVAEFTHTCFMVTPYEGYVALAEKLNRIAPGSGPKKSVFFNSGAEAVENAVKIARSYT----G----RPGVVAFD  127 (420)
T ss_pred             HHHHHHHHhccCccccccCChHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhc----C----CCcEEEEC
Confidence            688899988776554 356778899999999976   24789999999999999999998763    3    37899999


Q ss_pred             cCCCCcccccccccCCc-cccccCCCCCCCceeccCC----------------CHHHHHHHHH--hcCCcEEEEEEcccc
Q 017259           78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG----------------DITALEKIFK--ESGDQIAGFLFEPIQ  138 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----------------d~~~le~~l~--~~~~~~~~vi~~~~~  138 (374)
                      ++|||.+..+.++++.. .+..++.|...++..++++                +++.+++.+.  ..++++++|++||++
T Consensus       128 ~~yHG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~Epi~  207 (420)
T TIGR00700       128 HGFHGRTNMTMALTAKVMPYKSGFGPFAPEVYRAPLPYPYRDGLLDKQLSTDGELAAARAIFVIDVGANNVAALVIEPVQ  207 (420)
T ss_pred             CCcCCCcHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccchhHHHHHHHHHHHHHhhcCCCcEEEEEECCcc
Confidence            99999999988877642 3455555554555544442                2556777664  345789999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +.+|.+.++++++++|.++|++||+++|+||+|+||+++|..+++..+++.||++++||++++|+ |+||+++++++++.
T Consensus       208 g~~G~~~~~~~~l~~l~~lc~~~gillI~DEV~tg~gr~g~~~a~~~~~~~pDi~~lsK~l~~G~-pig~v~~~~~i~~~  286 (420)
T TIGR00700       208 GEGGFIVPAKGFVPALLDWCREHGIVFIADEVQTGFARTGAMFACEHEGPEPDLITTAKSLADGL-PLSGVTGRAEIMDA  286 (420)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEEecccCCcccchhHHHhhcCCCCCEEEeeccccCCc-ceEEEEecHHHHhh
Confidence            99999999999999999999999999999999999999998778888889999999999999998 99999999999999


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----
Q 017259          219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----  294 (374)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----  294 (374)
                      +....+..||++++++++++.++++.++++++.+++++..+++++.|+++...+| .+..+++.|.++++.+.+..    
T Consensus       287 ~~~~~~~~T~~~~pl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G~~~~i~~~~~~~~~~  365 (420)
T TIGR00700       287 PAPGGLGGTYAGNPLACAAALAVLAIIESEGLIERARQIGRLVTDRLTTLKAVDP-RIGDVRGLGAMIAVELVDPGTTEP  365 (420)
T ss_pred             cCCCCcCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC-CEEEeeccceEEEEEEecCCCCCc
Confidence            8877788899999999999999999988889999999999999999999877664 66778888999999883221    


Q ss_pred             CchhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 LPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .......+.+.|.++||.+.|+.  ++++|++|++..+++++++++++|.++++
T Consensus       366 ~~~~~~~l~~~~~~~Gv~i~p~~~f~~~lRl~p~l~~~~~~l~~~~~~l~~~l~  419 (420)
T TIGR00700       366 DAGLAERIATAAHAAGLLLLTCGMFGNIIRFLPPLTIGDELLSEGLDILCAILA  419 (420)
T ss_pred             cHHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCCcCHHHHHHHHHHHHHHhh
Confidence            01235678888889999998864  58999999999999999999999998875

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>PRK06058 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=5.4e-44  Score=339.87  Aligned_cols=335  Identities=30%  Similarity=0.549  Sum_probs=278.5

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.++.. .+.++...+++++|++.++   .++++|++||++|++.|+++++.+.    |    +++|+.+.
T Consensus        79 ~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~  150 (443)
T PRK06058         79 EAVREQVARFTHTCFMVTPYEGYVAVAEQLNRLTPGDHEKRSALFNSGAEAVENAVKIARSYT----G----RQAVVVFD  150 (443)
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHhh----C----CCeEEEEC
Confidence            688899988765443 2567888999999999873   3689999999999999999998652    2    37899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccC----CCH--------HHHHHH---HHh--cCCcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDF----GDI--------TALEKI---FKE--SGDQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----~d~--------~~le~~---l~~--~~~~~~~vi~~~~~~  139 (374)
                      ++|||.+..+.++++. ..+..++.+...++..+++    ++.        +.+++.   +++  .++++++|++||+++
T Consensus       151 ~~yHG~t~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAavi~EPi~g  230 (443)
T PRK06058        151 HAYHGRTNLTMALTAKSMPYKSGFGPFAPEVYRAPMSYPYRDPKGLATDGEEAAARAITVIEKQVGADNLAAVIIEPIQG  230 (443)
T ss_pred             CCcCcChHHHHhhcCCCcccccccCCCCCCceEcCCCcccccccccccchHHHHHHHHHHHHHhhCCCceEEEEECCccC
Confidence            9999999998887653 2344455444444443332    221        112221   222  236899999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      .+|.+.++++++++|.++|++||+++|+||+++||+|+|..|+++++++.||+++++|++++|+ |+|++++++++++.+
T Consensus       231 ~gG~~~p~~~yl~~lr~lc~~~gillI~DEV~tGfgRtG~~fa~~~~gv~PDiv~~gK~l~~G~-Pi~av~~~~~i~~~~  309 (443)
T PRK06058        231 EGGFIVPAEGFLPALLEWCRENGVVFIADEVQTGFARTGAWFACEHEGIVPDLITTAKGIAGGL-PLSAVTGRAEIMDAP  309 (443)
T ss_pred             CCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcChhhhHHHhcCCCCCEEEEcccccCCC-ccEEEEEcHHHHhhc
Confidence            9999999999999999999999999999999999999999888888999999999999999998 999999999999998


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259          220 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----  295 (374)
Q Consensus       220 ~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  295 (374)
                      ....++.||++++++++++.++++.++++++.++++++++++.+.|+++...+ +.+.++++.|.++.+++.++..    
T Consensus       310 ~~~~~~~T~~gnpl~~aaa~a~L~~~~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrg~G~~~~i~~~~~~~~~~~  388 (443)
T PRK06058        310 HPGGLGGTYGGNPVACAAALAAIETIEEDDLVARARQIEALMTDRLRALAAED-DRIGDVRGRGAMIAIELVKPGTTEPD  388 (443)
T ss_pred             cCCCCCCCCCCCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhC-CcEEeeeccceEEEEEEecCCCCCCc
Confidence            87778899999999999999999999888999999999999999999987766 4888899999999998843211    


Q ss_pred             chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ......+.+.|+++||++.+..  ++++|+.|++.+|++++++++++|+++++
T Consensus       389 ~~~~~~l~~~~~~~Gv~~~~~~~~~~~lr~~Ppl~~t~~~i~~~~~~l~~~l~  441 (443)
T PRK06058        389 AELTKALAAAAHAAGVIVLTCGTYGNVIRLLPPLVIGDELLREGLDVLEAALA  441 (443)
T ss_pred             HHHHHHHHHHHHHCCeEEeccCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH
Confidence            1235678888899999998753  58999999999999999999999999987

>PRK09792 4-aminobutyrate transaminase; Provisional

Probab=100.00  E-value=5.1e-44  Score=337.90  Aligned_cols=335  Identities=33%  Similarity=0.580  Sum_probs=286.0

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+... .+.++...+++++|++...   .++++|++||++|++.|+++++.+.    |    +.+|+.+.
T Consensus        63 ~ai~~ql~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~~~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~  134 (421)
T PRK09792         63 AAVEQQLQQFTHTAYQIVPYESYVTLAEKINALAPVSGQAKTAFFTTGAEAVENAVKIARAHT----G----RPGVIAFS  134 (421)
T ss_pred             HHHHHHHHhccCcccCccCCHHHHHHHHHHHHhCCCCCCceEEEeCChHHHHHHHHHHHHHhc----C----CCeEEEEC
Confidence            688899988766543 3568888999999999763   3689999999999999999998652    3    47899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCC----------CHHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG----------DITALEKIFKE--SGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+.++++. +.+..++.|...++..++++          +++.+++.+++  .++++++++++|+++++|..
T Consensus       135 ~~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~v~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~iaavi~EPvq~~~G~~  214 (421)
T PRK09792        135 GGFHGRTYMTMALTGKVAPYKIGFGPFPGSVYHVPYPSDLHGISTQDSLDAIERLFKSDIEAKQVAAIIFEPVQGEGGFN  214 (421)
T ss_pred             CCcCCccHHHHhhcCCCcccccCCCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhccCCCceEEEEEccccCCCCCc
Confidence            9999999998887664 34566666665566666663          34778887764  24679999999999999988


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||+++|+||+++||++.|..+++..++..||+++|||++++|+ |+|++++++++++.+....+
T Consensus       215 ~~~~~~l~~l~~lc~~~g~llI~DEv~tg~gr~G~~~a~~~~~~~pDi~t~gK~l~~G~-pigav~~~~~i~~~~~~~~~  293 (421)
T PRK09792        215 VAPKELVAAIRRLCDEHGIVMIADEVQSGFARTGKLFAMDHYADKPDLMTMAKSLAGGM-PLSGVVGNANIMDAPAPGGL  293 (421)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHhcCCCCcEEEeehhhcCCC-ceEEEEEcHHHHhccCCCCc
Confidence            88999999999999999999999999999999998888888889999999999999998 99999999999998887778


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----chhHH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAY  300 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~  300 (374)
                      ..||++++++++++.++++.++++++.+++++..+++++.|+.+...+| .+..+++.|.++++++++...    .....
T Consensus       294 ~~T~~gnpl~~aaa~a~l~~l~~~~~~~~~~~~g~~l~~~l~~l~~~~p-~v~~vrG~Gl~~~ie~~~~~~~~~~~~~~~  372 (421)
T PRK09792        294 GGTYAGNPLAVAAAHAVLNIIDKESLCERANQLGQRLKNTLIDAKESVP-AIAAVRGLGSMIAAEFNDPQTGEPSAAIAQ  372 (421)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHhCC-CcceecccceEEEEEecCCccCCcchHHHH
Confidence            8999999999999999999998888999999999999999999887775 677889999999999964311    12467


Q ss_pred             HHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.|+++|+++.+.+  ++.+|+.|++..+++++++++++|.++++
T Consensus       373 ~l~~~~~~~Gv~i~~~g~~~~~irl~P~l~i~~~ei~~~~~~l~~~l~  420 (421)
T PRK09792        373 KIQQRALAQGLLLLTCGAYGNVIRFLYPLTIPDAQFDAAMKILQDALS  420 (421)
T ss_pred             HHHHHHHHCCcEEeecCCCCCEEEEeCCCcCCHHHHHHHHHHHHHHHh
Confidence            78999999999997533  58999999999999999999999999875

>TIGR02407 ectoine_ectB diaminobutyrate--2-oxoglutarate aminotransferase

Probab=100.00  E-value=5e-44  Score=337.05  Aligned_cols=332  Identities=31%  Similarity=0.511  Sum_probs=282.1

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--C--C-CeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--G--Y-DMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~--~-~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +|+++++++..+... .+.++...+++++|++..  +  . ++++| ++||++|++.|+++++.+.    |    +.+|+
T Consensus        58 ~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~t----g----r~~ii  129 (412)
T TIGR02407        58 QALIDYLADDGIIHSLDMATEAKREFLETFNEIILKPRGLDYKVQFPGPTGTNAVESALKLARKVT----G----RSNVV  129 (412)
T ss_pred             HHHHHHHhhccceeccccCcHHHHHHHHHHHHhccCccCCCceEEEeCCCchHHHHHHHHHHhhhc----C----CCeEE
Confidence            678888886544333 345788889999999863  2  2 25655 5999999999999998652    2    47899


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCC--------CHHHHHHHHHhcC---CcEEEEEEccccCCCCc
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG--------DITALEKIFKESG---DQIAGFLFEPIQGEAGV  143 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~  143 (374)
                      .++++|||.+..+.++++.+.++..+.+...++..+|++        +++.+++.+.+++   +++++++++|+++++|.
T Consensus       130 ~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~~~~~~~~~~~~aavi~Epi~g~~G~  209 (412)
T TIGR02407       130 SFTNAFHGMTLGSLSVTGNRFKRQGAGVPLSNVSRMPYDGYLGGDVDTIAYFEKLLEDSSSGVDLPAAVILETVQGEGGI  209 (412)
T ss_pred             EECCCcCCchHHHHHhcCCcccccCCCCCCCCeEECCCCCccccchhHHHHHHHHHHhccCCCCceEEEEeccccCCCCC
Confidence            999999999999998888776676666655566777764        3777888887543   46899999999999999


Q ss_pred             ccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccC-CccchhhheeCHHHHhhcCCC
Q 017259          144 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQPG  222 (374)
Q Consensus       144 ~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~  222 (374)
                      +.++++++++|.++|++||+++|+||+++||||+|..++++.+++.||++++||++++ |+ |+|++++++++ +.+...
T Consensus       210 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GRtG~~~a~~~~~v~PDi~~~~K~lg~~G~-pigav~~~~~~-~~~~~~  287 (412)
T TIGR02407       210 NVASDEWLQRLEKLCRRHDILLIVDDIQAGCGRTGTFFSFEPAGIEPDIVCLSKSISGYGL-PLALTLIKPEL-DVWKPG  287 (412)
T ss_pred             ccCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhHHhcccCCCCCEEEechhccCCcc-ceeEEEEchhh-hccCCC
Confidence            8999999999999999999999999999999999999888889999999999999998 98 99999998886 666656


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          223 EHGSTFGGNPLASAVAIASLDV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       223 ~~~~~~~~~~~~~~aa~~al~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      .+..||++++++++++.++++. +.++++.+++++.+++++++|+.+...+|..+...++.|.++|+.+++..   ...+
T Consensus       288 ~~~~T~~gnpl~~aaa~a~l~~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~l~l~~~~---~~~~  364 (412)
T TIGR02407       288 EHNGTFRGNNLAFVTATAALEYYWSDDAFEKAVQRKSEIIQERLDRIVAEYPELIKQVRGRGLMQGIECGDGD---LAGK  364 (412)
T ss_pred             ccCCCCCccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhhCCCceEeeecceeEEEEEecChH---HHHH
Confidence            6788999999999999999995 77778999999999999999999887775456778889999999997543   5678


Q ss_pred             HHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          302 ICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+.|+++||++.+.+  .+.+|++|++.++++|+++++++|+++++
T Consensus       365 ~~~~~~~~Gv~v~~~~~~~~~lr~~p~l~~t~~~i~~~~~~l~~~l~  411 (412)
T TIGR02407       365 IAKAAFENGLIIETSGPNDEVIKLLPPLTIDEETLQQGLDILEQAVE  411 (412)
T ss_pred             HHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999998653  57999999999999999999999999886

Members of this family of class III pyridoxal-phosphate-dependent aminotransferases are diaminobutyrate--2-oxoglutarate aminotransferase (EC 2.6.1.76) that catalyze the first step in ectoine biosynthesis from L-aspartate beta-semialdehyde. This family is readily separated phylogenetically from enzymes with the same substrate and product but involved in other process such as siderophore or 1,3-diaminopropane biosynthesis. The family TIGR00709 previously included both groups but has now been revised to exclude the ectoine biosynthesis proteins of this family. Ectoine is a compatible solute particularly effective in conferring salt tolerance.

>PRK05630 adenosylmethionine--8-amino-7-oxononanoate transaminase; Provisional

Probab=100.00  E-value=5.3e-44  Score=336.66  Aligned_cols=334  Identities=27%  Similarity=0.435  Sum_probs=279.4

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+... .+.++...+++++|++..  +.++++|++|||+|++.|+++++.++ ..+| .+++.+|+.+.+
T Consensus        63 ~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AlklAr~~~-~~~g-~~~r~~ii~~~~  140 (422)
T PRK05630         63 AAAHKQIDTMSHVMFGGLTHEPAIKLTRKLLNLTDNGLDHVFYSDSGSVSVEVAIKMALQYS-KGQG-HPERTRLLTWRS  140 (422)
T ss_pred             HHHHHHHHhCCCcccCCcCCHHHHHHHHHHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECC
Confidence            688899998777554 356888899999999987  46899999999999999999999774 2234 345689999999


Q ss_pred             CCCCcccccccccCC-ccccccCCCCCCCceeccCC--------C----HHHHHHHHHhcCCcEEEEEEccc-cCCCCcc
Q 017259           79 CFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG--------D----ITALEKIFKESGDQIAGFLFEPI-QGEAGVI  144 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~--------d----~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~  144 (374)
                      +|||.+..+.++++. ..++..+.|...++..+|++        +    .+.+++.+.   ++++++++||+ ++.+|.+
T Consensus       141 ~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~---~~iAAvi~EPi~qg~gG~~  217 (422)
T PRK05630        141 GYHGDTFAAMSVCDPEGGMHSLWKGTLPEQIFAPAPPVRGSSPQEISEYLRSLELLID---ETVAAIIIEPIVQGAGGMR  217 (422)
T ss_pred             CcCCccHHHhccCCCcccccccccccCCCCeEcCCCcccCCChHHHHHHHHHHHHHHh---hceEEEEEechhcCcCCcc
Confidence            999999998887663 33444444443344443332        1    233444444   58999999996 9999999


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC--
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--  222 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--  222 (374)
                      .++++++++|.++|++||+++|+||+++|+|++|..++++.+++.||+++++|+++||+.++|++++++++++.+...  
T Consensus       218 ~~~~~~l~~lr~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDi~t~gK~l~gG~~p~~av~~~~~i~~~~~~~~~  297 (422)
T PRK05630        218 FHDVALIEGVRTLCDKHDILLIADEIATGFGRTGELFATLAAGVTPDIMCVGKALTGGFMSFAATLCTDKVAQLISTPNG  297 (422)
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEecceeCCCcCchhhHHHhcCCCCCeeeeechhhcCccccceeeccHHHHHHHhccCC
Confidence            999999999999999999999999999999999999999999999999999999999955899999999998887531  


Q ss_pred             ----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchh
Q 017259          223 ----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS  298 (374)
Q Consensus       223 ----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  298 (374)
                          .++.||.+++++++++.++++.++++++.++++++.+++++.|+.+.. +| .+.++++.|.++.+++.+..   .
T Consensus       298 ~~~~~h~~T~~g~Pla~aaa~aaL~~l~~~~~~~~~~~~g~~l~~~L~~l~~-~~-~v~~vRg~Gl~~~ie~~~~~---~  372 (422)
T PRK05630        298 GGALMHGPTFMANPLACAVAHASLEIIETGMWRKQVKRIEAELIAGLSPLAH-LP-GVADVRVLGAIGVVEMEQPV---D  372 (422)
T ss_pred             CCccccCCCCcCCHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHhhc-CC-CeeeeeccccEEEEEECCcc---c
Confidence                467899999999999999999998888999999999999999987643 43 67889999999999996542   4


Q ss_pred             HHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       299 ~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ...+.+.|+++|+++.+.+ +.+|+.|+++.|++|+++++++|+++++
T Consensus       373 ~~~~~~~~~~~Gl~~~~~g-~~l~~~PpL~it~~~i~~~~~~l~~al~  419 (422)
T PRK05630        373 MEEATQAAVDHGVWLRPFG-RLVYVMPPYITTSEQIAQICAALAAAVK  419 (422)
T ss_pred             HHHHHHHHHHCCeEEEecC-CEEEEECCccCCHHHHHHHHHHHHHHHh
Confidence            6789999999999998874 7999999999999999999999999987

>PRK05093 argD bifunctional N-succinyldiaminopimelate-aminotransferase/acetylornithine transaminase protein; Reviewed

Probab=100.00  E-value=1.3e-43  Score=335.01  Aligned_cols=337  Identities=34%  Similarity=0.542  Sum_probs=286.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+....+.++...+++++|++..+.++++|++||++|++.|+++++.++.. .+ ..++++|+.++.+||
T Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~sGseA~e~a~klar~~~~~-~~-~~~~~~ii~~~~~~H  140 (403)
T PRK05093         63 KALKEQGEKLWHISNVFTNEPALRLAKKLIDATFAERVFFANSGAEANEAAFKLARRYACD-RH-GPEKTEIIAFHNSFH  140 (403)
T ss_pred             HHHHHHHHhcCcccCccCCHHHHHHHHHHHhhCCCCEEEEeCchHHHHHHHHHHHHHHHhh-cC-CCCCCeEEEEcCCcC
Confidence            5777888776555444567778899999999888889999999999999999999876421 11 234589999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.+..++.+...++..++++|++.+++.+.   +++++|+++|+++++|.+.++++++++|.++|++|
T Consensus       141 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~aaiiiep~~~~gg~~~~~~~~l~~l~~l~~~~  217 (403)
T PRK05093        141 GRTLFTVSVGGQPKYSDGFGPKPADITHVPFNDLAAVKAVID---DHTCAVVVEPIQGEGGVIPATPEFLQGLRELCDQH  217 (403)
T ss_pred             CchhhhHhhcCChhhhhcCCCCCCCcEEeCCCCHHHHHHHhc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999888777776666666666666788899999999999886   57999999999888888888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+++.|..++...+++.||+.||||++++|+ |+||+++++++++.+....+..+++++++.++++.++
T Consensus       218 g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~-rig~vv~~~~i~~~l~~~~~~~t~~~~~~~~~aa~a~  296 (403)
T PRK05093        218 NALLIFDEVQTGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PIGAMLTTAEIASHFKVGTHGSTYGGNPLACAVAEAV  296 (403)
T ss_pred             CCEEEEechhhCCCCCccchhhhhcCCCCCEEEecccccCCc-ceEEEEEcHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999988887666667788999999999999998 9999999999999988766778899999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+..+++.++++++.+++.+.|+++...+ ......++.|.++|+.++... .....++++.|+++||.+.+.+.+++
T Consensus       297 L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~G~~~~~~l~~~~-~~~~~~~~~~l~~~Gv~v~~~g~~~l  374 (403)
T PRK05093        297 FDIINTPEVLEGVKARRQRFVDGLQKINQKY-GVFSEIRGMGLLIGAELKPQY-KGRARDFLNAAAEEGVMVLVAGPDVL  374 (403)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHhhC-CCeEeEeeCceEEEEEecCcc-hhHHHHHHHHHHHCCeEEecCCCCEE
Confidence            9988777889999999999999999886544 245567777999999885421 01467899999999999998777899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++|++..+++++++++++|+++++
T Consensus       375 Rl~~~~~~~~~~i~~~~~~l~~~l~  399 (403)
T PRK05093        375 RFAPSLVIEEADIDEGLARFEKAVA  399 (403)
T ss_pred             EEeCCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999887

>TIGR00709 dat 2,4-diaminobutyrate 4-transaminases

Probab=100.00  E-value=7.9e-44  Score=338.38  Aligned_cols=337  Identities=28%  Similarity=0.473  Sum_probs=279.3

Q ss_pred             ChHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            1 MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      ++|++++++++.+... .+.++...+++++|++....     ..+++++|||+|++.|+++++.+.    |    +.+|+
T Consensus        61 ~~ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~~~~f~~~sGsEA~e~AlklAr~~t----g----r~~Ii  132 (442)
T TIGR00709        61 KQKILDYLQSGLPLHTLDLTTPLKDAFIEALLNIIPKRKMDYKLQFPGPSGADAVEAAIKLAKTYT----G----RTNVI  132 (442)
T ss_pred             HHHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCcCCCccEEEeCCCHHHHHHHHHHHHHHhc----C----CCeEE
Confidence            3688899988665443 36678899999999998731     335667999999999999999763    3    47899


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCH-----------------HHHHHHHHh---cCCcEEEEEE
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDI-----------------TALEKIFKE---SGDQIAGFLF  134 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~-----------------~~le~~l~~---~~~~~~~vi~  134 (374)
                      .+.++|||.+..+.++++.+.++.++.+..+++..+++++.                 +.+++.+.+   .+++++++++
T Consensus       133 ~~~~~yHG~t~~~~s~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavi~  212 (442)
T TIGR00709       133 SFSGGFHGMTIGALAVTGNLFAKNAVGMLMPGVQFMPYPHEYRCPFGIGGEAGSNASIEYFENFIEDVESGVDKPAAVIL  212 (442)
T ss_pred             EEcCCcCCchHHHHhhcCChhhhccCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhccCCCceEEEEE
Confidence            99999999999999888766555555555555555554321                 123444432   2357999999


Q ss_pred             ccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHH
Q 017259          135 EPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKE  214 (374)
Q Consensus       135 ~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~  214 (374)
                      +|+++++|.+.++++++++|.++|++||+++|+||+++||+|+|..++++++++.||++++||++++|+ |+|+++++++
T Consensus       213 Epi~g~~G~~~~~~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~~G~-Pigav~~~~~  291 (442)
T TIGR00709       213 EAIQGEGGVVAAPSEWLQKIREVTRKHDIKLILDEVQAGFGRSGTMFAFEHAGIEPDFVVMSKAVGGGL-PLAVLLIAPE  291 (442)
T ss_pred             ccccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCCCCchhHHHHcCCCCcEEEEcccccCCc-ccEEEEEchH
Confidence            999999999999999999999999999999999999999999999889888999999999999999998 9999999888


Q ss_pred             HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          215 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                       .+.+....+..||++++++++++.++|+.++++++.++++++++++.+.|+++..++| .+.++++.|.++.+++.++.
T Consensus       292 -~~~~~~~~~~~T~~gnpla~aaa~a~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrG~Gl~~~ie~~~~~  369 (442)
T TIGR00709       292 -FDAWQPAGHTGTFRGNQLAMVTGTEALNYWKDDNLAQNAQERGERITSFLDDMIKEHP-CIGNVRGRGLMQGIMIVDER  369 (442)
T ss_pred             -HhccCCCcCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEccCc
Confidence             4666555678899999999999999999998889999999999999999999887774 88899999999999984331


Q ss_pred             C-----------chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 L-----------PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~-----------~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .           ......+...|+++|+++.+..  .+.+|+.|++.+|++|+++++++|+++++ ++
T Consensus       370 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~ei~~~~~~l~~~l~-~~  436 (442)
T TIGR00709       370 QSKDATGAYPRDCELAAAIQGACFENGLLLETGGREGEVFRLLCPITIDQEECEEGISRFKQAVE-EA  436 (442)
T ss_pred             ccccccccCCcchHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            0           0125678888999999997653  68999999999999999999999999987 54

This family consists of L-diaminobutyric acid transaminases. This general designation covers both 2.6.1.76 (diaminobutyrate-2-oxoglutarate transaminase, which uses glutamate as the amino donor in DABA biosynthesis), and 2.6.1.46 (diaminobutyrate--pyruvate transaminase, which uses alanine as the amino donor). Most members with known function are 2.6.1.76, and at least some annotations as 2.6.1.46 in current databases at time of model revision are incorrect. A distinct branch of this family contains examples of 2.6.1.76 nearly all of which are involved in ectoine biosynthesis. A related enzyme is 4-aminobutyrate aminotransferase (EC 2.6.1.19), also called GABA transaminase. These enzymes all are pyridoxal phosphate-containing class III aminotransferase.

>PRK06082 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=9.4e-44  Score=338.12  Aligned_cols=337  Identities=31%  Similarity=0.525  Sum_probs=283.8

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      ++|+.++++++.+..+.+.++...+|+++|++..+  .++++|++||++|++.|+++++.+.    |    +.+|+.+..
T Consensus        93 ~~Ai~~ql~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGseAve~AlklAr~~t----g----r~~ii~~~~  164 (459)
T PRK06082         93 IEKVKEQMAKLPFSPRRFTNETAIECAEKLTEIAGGELNRVLFAPGGTSAIGMALKLARHIT----G----NFKVVSLWD  164 (459)
T ss_pred             HHHHHHHHHhCCCccCccCCHHHHHHHHHHHHhCCCCCCEEEECCCcHHHHHHHHHHHHHhc----C----CCEEEEEeC
Confidence            36889999887766555778899999999999873  4799999999999999999998653    2    478999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceecc--------CCC--------HHHHHHHHHhcCCcEEEEEEccccCCCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FGD--------ITALEKIFKESGDQIAGFLFEPIQGEAG  142 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~d--------~~~le~~l~~~~~~~~~vi~~~~~~~~g  142 (374)
                      +|||.+..+..+++.+.++..+.|..+++..++        +++        ++.+++.++++ +++++|++||+++. |
T Consensus       165 ~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~-~~vAavIvEPv~g~-g  242 (459)
T PRK06082        165 SFHGASLDAISVGGEACFRQGMGPLMAGVERIPPAVSYRGAFPDADGSDVHYADYLEYVIEKE-GGIGAFIAEAVRNT-D  242 (459)
T ss_pred             CCcCccHHHHhhcCCcccccCCCCCCCCCEEeCCCcccccccCChhHHHHHHHHHHHHHHhcC-CCEEEEEECCccCC-C
Confidence            999999888888877666666666555555443        332        34577777654 57999999999887 5


Q ss_pred             cccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC
Q 017259          143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG  222 (374)
Q Consensus       143 ~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~  222 (374)
                      .+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.++.++++...+...
T Consensus       243 ~~~~~~~yl~~lr~lc~~~g~llI~DEV~tG~GRtG~~fa~e~~gv~PDiv~~gKgl~gG~~P~~av~~~~~i~~~~~~~  322 (459)
T PRK06082        243 VQVPSKAYWKRVREICDKHNVLLIIDEIPNGMGRTGEWFTHQAYGIEPDILCIGKGLGGGLVPIAAMITKDKYNTAAQIS  322 (459)
T ss_pred             CcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCccchhhHhHhhCCCCCEEEecccccCCCCcceEEEEcHHHHhhccCC
Confidence            67789999999999999999999999999999999999999999999999999999999855999999998877554322


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----ch
Q 017259          223 EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PV  297 (374)
Q Consensus       223 ~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~  297 (374)
                      ...+||++++++++++.++++.++++++.++++++.+++++.|+++..++| .+.++++.|.++.+++..+..     ..
T Consensus       323 ~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~ve~~~~~~~~~~~~~  401 (459)
T PRK06082        323 LGHYTHEKSPLGCAAALATIEVIEQEGLLEKVKADSQFMRERLLEMKAKYP-LIGDVRGIGLLWGVELVTDRHTKERAYD  401 (459)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhCC-CeeeeeeccceeEEEEccCccccCccHH
Confidence            222799999999999999999998889999999999999999999887774 888999999999999853211     11


Q ss_pred             hHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          298 SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       298 ~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ....+...++++|+++.+.+.+.+|++|++++|++|++++++++++++. ++
T Consensus       402 ~~~~~~~~~~~~Gvl~~~~~~~~i~~~Ppl~it~~eid~~~~~l~~~l~-~~  452 (459)
T PRK06082        402 EAEAVLYRCLNNGLSFKVSQGNVIQLSPPLIITREELTQALAILEEAIA-KI  452 (459)
T ss_pred             HHHHHHHHHHhCCCEEEecCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-HH
Confidence            2557888899999999887679999999999999999999999999998 65

>PRK08117 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=7.5e-44  Score=338.97  Aligned_cols=337  Identities=36%  Similarity=0.628  Sum_probs=284.0

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+.+ ..+.++...+++++|++..  +.+.++|++||++|++.|+++++.+.    |    +.+|+.+++
T Consensus        66 ~a~~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGseA~e~AlklAr~~t----g----r~~ii~~~~  137 (433)
T PRK08117         66 QAIKEQADKLMHGPSGVIYYESILKLAEELAEITPGGLDCFFFSNSGAEAIEGALKLAKHVT----K----RPYIISFTG  137 (433)
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHhc----C----CCeEEEECC
Confidence            68889998876655 3456888999999999987  46789999999999999999998653    2    478999999


Q ss_pred             CCCCcccccccccCC-ccccccCCCCCCCceeccCC-----------------CHHHHHHHHHh--cCCcEEEEEEcccc
Q 017259           79 CFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFKE--SGDQIAGFLFEPIQ  138 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~~--~~~~~~~vi~~~~~  138 (374)
                      +|||.+..+.++++. +.++..+.+...++..+|++                 +++++++.+++  .++++++|++||++
T Consensus       138 ~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~aavi~Epi~  217 (433)
T PRK08117        138 CFHGRTLGALSVTTSKSKYRKYYQPLLGSVYQAPYPYCDRCPKGEDPEVCFLECLRDLESLFKHQVTPEEVAAVIIEPVL  217 (433)
T ss_pred             CcCCcCHHHHhhcCCCccccccCCCCCCCcEEeCCCccccccccCchhHHHHHHHHHHHHHHHhccCCCcEEEEEECCee
Confidence            999999988776653 44445555554555555443                 45667777764  34679999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      ++.|.+.++++++++|.++|++||+++|+||+|+||+++|..+....+++.||++++||++++|+ |+|++++++++++.
T Consensus       218 ~~~G~~~~~~~~l~~l~~lc~~~g~llI~DEv~tG~gr~G~~~~~~~~gv~pDi~t~sK~lg~G~-pigav~~~~~i~~~  296 (433)
T PRK08117        218 GEGGYIVPPKSFLKKLREICDRHGILLIFDEVQTGFGRTGEWFAAQTFGVVPDIMTIAKGIASGL-PLSAVVASKELMEQ  296 (433)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEecchhccCccccchhHhhcCCCCCEeehhhhccCCC-cceeEEEcHHHHhh
Confidence            99999999999999999999999999999999999999998877778899999999999999998 99999999999998


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---
Q 017259          219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---  295 (374)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  295 (374)
                      +....++.||++++++++++.++++.++++++.++++.+.+++++.|+++...++ .+.++++.|.++++++.++..   
T Consensus       297 ~~~~~~~~T~~~np~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~Gl~~gi~~~~~~~~~~  375 (433)
T PRK08117        297 WPLGSHGTTFGGNPVACAAALATLEVIKEEKLLDNANEMGAYALERLEVLKEKHP-VIGDVRGIGLMIGIEIVDPDGEPD  375 (433)
T ss_pred             ccCCCCCCCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-ceeeeecCCcEEEEEEecCCCCcc
Confidence            8776788899999999999999999997778999999999999999999876664 677889999999998843211   


Q ss_pred             chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ......+.+.|+++||++.+.+  .+.+|++|++.+|++++++++++|.++++ ++
T Consensus       376 ~~~~~~~~~~l~~~Gv~~~~~g~~~~~lRl~p~~~~t~~~i~~~~~~l~~~l~-~~  430 (433)
T PRK08117        376 GDAVEKILDKCLEKGLLFYLCGNAGNVLRMIPPLTVTKEEIDEGLDILDEALT-EY  430 (433)
T ss_pred             hHHHHHHHHHHHHCCCEEeecCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH-HH
Confidence            1235678899999999887643  58999999999999999999999999998 55

>PRK05639 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.2e-43  Score=336.76  Aligned_cols=337  Identities=31%  Similarity=0.551  Sum_probs=282.8

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+... ...++...+|+++|++..+  .++++|++|||+|++.|+++++.+.    |    +.+|+.+.+
T Consensus        76 ~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t----g----r~~ii~~~~  147 (457)
T PRK05639         76 KAVQEQVALIQHSMIGYTHSERAIRVAEKLAEISPIENPKVLFGLSGSDAVDMAIKVSKFST----R----RPWILAFIG  147 (457)
T ss_pred             HHHHHHHHhccccccCccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHhc----C----CCeEEEECC
Confidence            688899988766544 3446788899999999863  4799999999999999999998653    2    478999999


Q ss_pred             CCCCcccccccccCC-ccccccCCCCCCCceeccCCC-------------H--------HHHHHHHHh---cCCcEEEEE
Q 017259           79 CFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD-------------I--------TALEKIFKE---SGDQIAGFL  133 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d-------------~--------~~le~~l~~---~~~~~~~vi  133 (374)
                      +|||.+..+.++++. ..++.++.|..+++..+|+++             .        +.+++.+..   .++++++|+
T Consensus       148 ~yHG~t~~a~s~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~iAAvI  227 (457)
T PRK05639        148 AYHGQTLGATSVAAFQSSQKRGFSPLMPNVVWIPYPNPYRNPWGINGYEEPDELINRFLDYLENYVFSHVVPPDEVAALF  227 (457)
T ss_pred             CcCCccHHHHHHcCCCcccccCCCCCCCCceEeCCCccccccccccccCCHHHHHHHHHHHHHHHHHHhhcCCCceEEEE
Confidence            999999988877653 345556666656666666642             2        234444432   247899999


Q ss_pred             EccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCH
Q 017259          134 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADK  213 (374)
Q Consensus       134 ~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~  213 (374)
                      +||+++.+|.+.++++++++|.++|++||+++|+||+++|||++|..|+.+++++.||+++++|+++||+ |+|++++++
T Consensus       228 ~EPiqg~gG~~~p~~~yl~~l~~lc~~~g~llI~DEv~tG~GrtG~~~a~~~~gv~PDiv~~gK~l~gG~-pi~av~~~~  306 (457)
T PRK05639        228 AEPIQGDAGIVVPPENFFKELKKLLDEHGILLVMDEVQTGIGRTGKWFASEWFEVKPDLIIFGKGVASGM-GLSGVIGRK  306 (457)
T ss_pred             ECCccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCcCchHHHHHhcCCCCCEEEechhhcCCC-cceeEEehH
Confidence            9999999999999999999999999999999999999999999999889999999999999999999998 999999999


Q ss_pred             HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          214 EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      ++++. ....+..|++++++++++++++++.++++++.++.+++.+++++.|+++...+ +++.++++.|.++.+++..+
T Consensus       307 ~i~~~-~~~~~~~T~~g~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~-~~~~~VrG~Gl~~gve~~~~  384 (457)
T PRK05639        307 ELMDL-TSGSALLTPAANPVISAAAEATLEIIEEENLLKNALKVGEFIKKRLLEMKESF-EVIGDVRGKGLMIGVEIVKE  384 (457)
T ss_pred             HHHhh-cCCCcccCCCcCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhC-CCEEeeccceeEEEEEEecC
Confidence            99883 33345678999999999999999999988999999999999999999987776 48889999999999988432


Q ss_pred             CC---chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          294 AL---PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       294 ~~---~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ..   ......+.+.|+++|+++.+.+  .+.+|+.|++.+|++|+++++++|+++++ .+.
T Consensus       385 ~~~~~~~~~~~~~~~~~~~Gv~~~~~g~~~~~lr~~Ppl~it~~~id~~~~~l~~~l~-~~~  445 (457)
T PRK05639        385 NGKPDPELTGKICWRAFELGLILPSYGMFGNVIRITPPLVITKEIAEKGLEIMERAIK-DAL  445 (457)
T ss_pred             CCCCCHHHHHHHHHHHHhCCeEEeecCCCCCEEEEeCCCccCHHHHHHHHHHHHHHHH-HHH
Confidence            11   1235678899999999998754  58999999999999999999999999998 654

>PRK06917 hypothetical protein; Provisional

Probab=100.00  E-value=1.4e-43  Score=336.26  Aligned_cols=344  Identities=33%  Similarity=0.532  Sum_probs=285.1

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+..+ .+.++...+++++|++.+.  .++++|++|||+|++.|+++++.+. ..+| ..++.+|+.+++
T Consensus        54 ~Ai~~ql~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~~-~~rg-~t~r~~ii~~~~  131 (447)
T PRK06917         54 DAIKEQAEEVSFVYRSQFTSEPAEKLAKKLSDLSPGDLNWSFFVNSGSEANETAMKIAIQHF-QERG-IQGKHKILSRWM  131 (447)
T ss_pred             HHHHHHHhhCcCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCChHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECC
Confidence            688899988765543 3668889999999999873  4689999999999999999998764 3344 345689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceecc--------C---------CCHHHHHHHHHhcC-CcEEEEEEccccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------F---------GDITALEKIFKESG-DQIAGFLFEPIQGE  140 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~---------~d~~~le~~l~~~~-~~~~~vi~~~~~~~  140 (374)
                      +|||.+..+.++++.......+.+...++..++        +         ++++.+++.+++++ +++++|++||++++
T Consensus       132 ~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~iAAvi~EPi~g~  211 (447)
T PRK06917        132 SYHGITMGALSMSGHPLRRQRFVSLLEDYPTISAPYCYRCPVQKVYPTCQLACATELETAIERIGAEHIAAFIAEPIIGA  211 (447)
T ss_pred             CcCCccHHHHHhcCCccccccCCCCCCCCeEeCCCcccccccCCChHHHHHHHHHHHHHHHHhcCCCceEEEEEeccccC
Confidence            999999998887776554444443322222211        1         13467788887654 57999999999885


Q ss_pred             -CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          141 -AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       141 -~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                       +|.+.++++++++|.++|++||+++|+||+++||||+|..++++++++.||++++||++++|++|+|++++++++++.+
T Consensus       212 ~gG~~~p~~~fl~~lr~lc~~~g~llI~DEv~tGfGRtG~~~a~~~~gv~PDi~~~gK~l~~G~~Pi~a~~~~~~i~~~~  291 (447)
T PRK06917        212 AGAAVVPPKGYYKVIKEICDHYDILFIADEVMTGLGRTGAMFAMEHWGVEPDIMTLGKGLGAGYTPIAATVVSDRVMEPI  291 (447)
T ss_pred             cCceecCCHHHHHHHHHHHHHcCCEEEEechhhCcCcccchhhHHhcCCCCCEEEeeehhccCCcceEEEEEcHHHHHHH
Confidence             5688899999999999999999999999999999999999999999999999999999999966999999999998887


Q ss_pred             CCC----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          220 QPG----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       220 ~~~----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                      ...    .+++||++++++++++.++++.++++++.++++++.+++++.|+++..++| .+.++++.|.++.+++..+..
T Consensus       292 ~~~~~~~~~~~T~~gnpl~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~i~~vrG~Gl~~~ie~~~~~~  370 (447)
T PRK06917        292 LRGSRSIMSGHTLSANPLSAATALAVLEYMEKHNLPEKAAEKGEYLIKGLQKVQQQST-IIGDVRGKGLLIGVEFVADKK  370 (447)
T ss_pred             hccCcccccccCCCCCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhcCC-CEEEEeecceEEEEEEeccCC
Confidence            532    356799999999999999999998889999999999999999999987774 888999999999999843210


Q ss_pred             --------chhHHHHHHHHHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 --------PVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 --------~~~~~~~~~~l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                              ......+.+.|+++|+++.+..       ++.+|++|++.+|++|+++++++|.++++ ++
T Consensus       371 ~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~g~~~~~i~l~Ppl~it~~eid~~~~~l~~~l~-~~  438 (447)
T PRK06917        371 TKQPFSKSQAVASELISVAAKNGLLLYPAVAGQDGKEGDAVIIAPPMTITYSELDELLSIFAKSVE-EM  438 (447)
T ss_pred             cCCCCcchhHHHHHHHHHHHhCCcEEEecccccCCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence                    0135678899999999998752       57999999999999999999999999998 65

>PRK12403 putative aminotransferase; Provisional

Probab=100.00  E-value=1.5e-43  Score=337.24  Aligned_cols=343  Identities=27%  Similarity=0.426  Sum_probs=280.5

Q ss_pred             ChHHHHHHHhccccCcC--CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSSRA--FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|++++++++.+.+..  +.++...+++++|++..+  .++++|++||++|++.|+++++.++ ...| .+++.+|+.+
T Consensus        76 ~~A~~~q~~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~v~f~~SGseA~e~AiklAr~~~-~~~g-~~~r~~ii~~  153 (460)
T PRK12403         76 AAAAARQMEQLPYYNMFFHTTHPAVIELSELLFSLLPGHYSHAIYTNSGSEANEVLIRTVRRYW-QVLG-KPQKKIMIGR  153 (460)
T ss_pred             HHHHHHHHHhCCCeecccccCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHHH-HhhC-CCCCcEEEEE
Confidence            36889999987765442  457889999999999875  6899999999999999999998764 2234 2334678888


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHh-cCCcEEEEEEcccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE-SGDQIAGFLFEPIQ  138 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~-~~~~~~~vi~~~~~  138 (374)
                      ..+|||.+..+..+++...++. +.+..+++..+++++                 .+++++.+.+ .++++++|++||++
T Consensus       154 ~~~yHG~t~~~~s~s~~~~~~~-~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~iaavI~Epv~  232 (460)
T PRK12403        154 WNGYHGSTLAATALGGMKFMHE-MGGLIPDVAHIDEPYWYANGGELTPAEFGRRAALQLEEKILELGAENVAGFVAEPFQ  232 (460)
T ss_pred             CCCcCcccHhhhhcCCCccccc-cCCCCCCCEEeCCCcccccccCCChHHHHHHHHHHHHHHHHHhCCCceEEEEEcccc
Confidence            9999999999888876544332 233334444443221                 3556666643 34689999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +.+|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.
T Consensus       233 g~gG~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGRtG~~~a~e~~gv~PDiv~~gK~lggG~~Piga~v~~~~i~~~  312 (460)
T PRK12403        233 GAGGMIFPPESYWPEIQRICRQYDVLLCADEVIGGFGRTGEWFAHEHFGFEPDTLSIAKGLTSGYVPMGGLVLSKRIAEA  312 (460)
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhhhhhcCCCCCeEEEcccccccccceEEEEECHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999996599999999998887


Q ss_pred             cCC----CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          219 IQP----GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       219 ~~~----~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      +..    ..+++||+++++++++++++|+.++++++.++++ ++.+++++.|+++..++ +.+.++++.|.++.+++..+
T Consensus       313 ~~~~~~~~~~~~T~~gnPl~~Aaala~L~~i~~~~l~~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrG~Gl~~gie~~~~  391 (460)
T PRK12403        313 LVEQGGVFAHGLTYSGHPVAAAVAIANLKALRDEGVVTRVKDDTGPYLQRCLREVFGDH-PLVGEVQGAGLVAALQFAED  391 (460)
T ss_pred             HhcCCCccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHhcC-CCEEeEeecceEEEEEEccC
Confidence            743    1367899999999999999999998888999996 89999999999887777 48899999999999998432


Q ss_pred             CC---c-----hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          294 AL---P-----VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       294 ~~---~-----~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..   .     .....+.+.++++|+++.+.+ +.+|++|+++.|++|+++++++|+++++ ++
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~~-~~~~l~Ppl~it~~eid~~~~~l~~al~-~~  453 (460)
T PRK12403        392 KATRKRFANENDLAWRCRTIGFEEGVIIRSTL-GRMIMAPALVAGRAEIDELVDKTRIAVD-RT  453 (460)
T ss_pred             ccccccccchhHHHHHHHHHHHhCCEEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            11   0     113346677789999998763 5789999999999999999999999998 66

>PRK08360 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=2.5e-43  Score=334.07  Aligned_cols=338  Identities=30%  Similarity=0.512  Sum_probs=283.7

Q ss_pred             hHHHHHHHhccccCcC-CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+..+. +.++...+++++|++..+  .++++|++|||+|++.|+++++.+.        +|.+|+.+.+
T Consensus        64 ~Ai~~ql~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGsEAve~AlklAr~~t--------gr~~ii~~~~  135 (443)
T PRK08360         64 KAIKEQTDKLIHYTPIYGFPVEPLLLAEKLIEIAPGDNPKVSFGLSGSDANDGAIKFARAYT--------KRRKILSYLR  135 (443)
T ss_pred             HHHHHHHHhccCccccccCcHHHHHHHHHHHHhCCCCCCEEEEcCCHHHHHHHHHHHHHHhc--------CCCeEEEEeC
Confidence            6889999988776553 457788999999999873  3699999999999999999998763        3488999999


Q ss_pred             CCCCcccccccccCCc-cccccCCCCCCCceeccCCC-----------------HHHHHHHHHh--cCCcEEEEEEcccc
Q 017259           79 CFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE--SGDQIAGFLFEPIQ  138 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~--~~~~~~~vi~~~~~  138 (374)
                      +|||.+..+.++++.. .++..+.+ ..++.++++++                 ++.+++.++.  .++++++++++|++
T Consensus       136 ~yHG~t~~a~s~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~iAAvi~eP~~  214 (443)
T PRK08360        136 SYYGSTYGAMSLTGLDFPVRALVGE-LSDVHYIPYPDCYRCPFGKEPGSCKMECVEYIKEKFEGEVYAEGVAALFAEPIQ  214 (443)
T ss_pred             CcCCcCHHHHHhcCCCcccccCCCC-CCCcEEEeCCccccccccCchhhhHHHHHHHHHHHHHhccCCCCeEEEEECCcc
Confidence            9999998887776532 23344444 34455554432                 3456666654  34689999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +++|.+.++++++++|.++|++||+++|+||+|+|++++|..++...+++.||++++||++++|+ |+|++++++++++.
T Consensus       215 ~~~G~~~~~~~~l~~l~~l~~~~g~llI~DEv~~g~gr~G~~~a~~~~~~~pDiitlsK~l~~G~-pigav~~~~~i~~~  293 (443)
T PRK08360        215 GDAGMIVPPEDYFKKLKKILDEHGILLVVDEVQSGLGRTGKWFAIEHFGVEPDIITLGKPLGGGL-PISATIGRAEIMDS  293 (443)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCccchhhhhcCCCCCEEEecccccCCc-eeEEEEEcHHHHhh
Confidence            99999998899999999999999999999999999999998777777789999999999999998 99999999999999


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---
Q 017259          219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---  295 (374)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  295 (374)
                      +....+..++++++++++++.++++.+.++++.++++++.+++++.|+++...+| .+.++++.|.++.+++.++..   
T Consensus       294 ~~~~~~~~T~~~~p~~~aaa~a~l~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~v~~vrg~Gl~~gie~~~~~~~~~  372 (443)
T PRK08360        294 LPPLAHAFTLSGNPVASAAALAVIEEIEEKNLLKRAEKLGNYTKKRLEEMKKKHE-LIGDVRGIGLMIGVDLVKDRETKE  372 (443)
T ss_pred             hcCCCCCCCCCcCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeeccceEEEEEEecCCcccC
Confidence            8766678899999999999999999998889999999999999999999877664 788899999999998843210   


Q ss_pred             --chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          296 --PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       296 --~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                        ......+.+.|+++|+++.+...+.+|++|++.+|++++++++++|.++++ .+.+
T Consensus       373 ~~~~~~~~~~~~l~~~Gi~~~~~~~~~lr~~P~l~~t~~~id~~~~~l~~~l~-~~~~  429 (443)
T PRK08360        373 RAYEEAAKVVWRAWELGLIVTFFSGNVLRIQPPLTIEKEVLDEGLDILEEAIE-DVEE  429 (443)
T ss_pred             ccHHHHHHHHHHHHHCCeEEeecCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence              113567889999999999876678999999999999999999999999998 7643

>PRK09264 diaminobutyrate--2-oxoglutarate aminotransferase; Validated

Probab=100.00  E-value=1.7e-43  Score=335.06  Aligned_cols=335  Identities=32%  Similarity=0.535  Sum_probs=280.8

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc----CCC-eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF----GYD-MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~----~~~-~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +|+++++++..+... .+.++...+++++|++..    +.+ +++| ++||++|++.|+++++.+.    |    +.+|+
T Consensus        62 ~ai~~ql~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~~~~~~f~~~sGseA~e~AlklAr~~t----g----r~~ii  133 (425)
T PRK09264         62 QALIDYLQRDGITHGLDMHTTAKREFLETFEETILKPRGLDYKVQFTGPTGTNAVEAALKLARKVT----G----RTNIV  133 (425)
T ss_pred             HHHHHHHHhcccccccccCcHHHHHHHHHHHHhhcCCcCCCceEEEeCCCHHHHHHHHHHHHHHhc----C----CCeEE
Confidence            688888887544433 345778889999999864    233 5656 5899999999999998762    2    47899


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCC--------CHHHHHHHHHhcC---CcEEEEEEccccCCCCc
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG--------DITALEKIFKESG---DQIAGFLFEPIQGEAGV  143 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~  143 (374)
                      .+.++|||.+..+.++++.+.++..+.+...++..+|++        |++++++.+++++   +++++|++||+++.+|.
T Consensus       134 ~~~~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~~aavi~Epv~g~~G~  213 (425)
T PRK09264        134 AFTNGFHGMTLGSLAVTGNSHKRQGAGVPLNNVTRMPYDGYFGGDVDTLAYLEKLLEDSSSGVDLPAAVIVETVQGEGGI  213 (425)
T ss_pred             EECCccCCccHHHHHhcCCcccccCCCCCCCCeEEeCCCCccccchhHHHHHHHHHHhccCCCCceEEEEEecccCCCCC
Confidence            999999999999998887766666666655567777763        6788898887542   46999999999999999


Q ss_pred             ccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccC-CccchhhheeCHHHHhhcCCC
Q 017259          144 IIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQPG  222 (374)
Q Consensus       144 ~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~  222 (374)
                      +.++++++++|.++|++||+++|+||+|+|||++|..+.++.+++.||++++||++++ |+ |+|++++++++ ..+...
T Consensus       214 ~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~~~~~~~v~PDi~t~~K~l~~~G~-pigav~~~~~i-~~~~~~  291 (425)
T PRK09264        214 NVASAEWLQRLAKLCRKHDILLIVDDIQAGCGRTGTFFSFERAGITPDIVTLSKSISGYGL-PMALVLIKPEL-DVWKPG  291 (425)
T ss_pred             cCCCHHHHHHHHHHHHHcCcEEEEechhhCCccccHHHHHhhcCCCCCEEEeccccCCCcc-ceEEEEEchhh-hccCCC
Confidence            8999999999999999999999999999999999998888888999999999999998 88 99999999887 456555


Q ss_pred             CCCCCCCCCHHHHHHHHHHH-HHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          223 EHGSTFGGNPLASAVAIASL-DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       223 ~~~~~~~~~~~~~~aa~~al-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      .++.||++++++++++.+++ +.+.++++.++++++.++++++|+++...+|......++.|.++++.+++..   ....
T Consensus       292 ~~~~T~~gnp~~~aaa~a~l~~~~~~~~l~~~~~~~g~~l~~~l~~l~~~~~~~~~~vrg~Gl~~~i~l~~~~---~~~~  368 (425)
T PRK09264        292 EHNGTFRGNNLAFVTATAALEEYWSDDAFEKEVKAKGELVRERLEEIAAKYPGLGAEVRGRGMMQGIDFGDGE---LAGK  368 (425)
T ss_pred             ccCCCCCCCHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhCCCceecceecccEEEEEecChH---HHHH
Confidence            67789999999999999999 6666668999999999999999998876654334667888999999986543   5678


Q ss_pred             HHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          302 ICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      +++.|.++||++.+..  .+.||++|++.++++++++++++|+++++ .+.
T Consensus       369 l~~~~~~~Gv~~~~~~~~~~~lr~~p~l~~t~~ei~~~~~~l~~~l~-~~~  418 (425)
T PRK09264        369 IAAEAFENGLIIETSGPEDEVVKLLPPLTIDEEELEEGLDILEEAVA-EVL  418 (425)
T ss_pred             HHHHHHHCCCEEeccCCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999998753  47999999999999999999999999998 653

>PRK06931 diaminobutyrate--2-oxoglutarate aminotransferase; Provisional

Probab=100.00  E-value=2.2e-43  Score=335.52  Aligned_cols=334  Identities=31%  Similarity=0.502  Sum_probs=278.9

Q ss_pred             hHHHHHHHhcccc-CcCCCCCcHHHHHHHHhcccC-C----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            2 KALQEQAEKLTLS-SRAFYNDKFPVFAERLTSMFG-Y----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~-~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      +|+++++.++.+. ...+.++...+++++|++..+ .    ..+++++|||+|++.|+++++.+.    |    |.+|+.
T Consensus        81 ~Ai~~q~~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~~~~f~~~SGsEAve~AlklAr~~t----g----r~~Ii~  152 (459)
T PRK06931         81 QSIQDVLTSGLPLHTLDLTTPLKDAFSEYLLSLLPGQGKEYCLQFTGPSGADAVEAAIKLAKTYT----G----RSNVIS  152 (459)
T ss_pred             HHHHHHHhhhccccccccCCHHHHHHHHHHHHhCCCccccceEEEeCCCcHHHHHHHHHHHHHhc----C----CCeEEE
Confidence            6788888764432 223568888999999999873 2    234667999999999999998763    3    488999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCCC-------------HHHH----HHHHHh---cCCcEEEEEEc
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-------------ITAL----EKIFKE---SGDQIAGFLFE  135 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-------------~~~l----e~~l~~---~~~~~~~vi~~  135 (374)
                      +.++|||.+..+.++++.+.++..+.|..+++..+++++             .+.+    ++.+.+   .+++++++|+|
T Consensus       153 ~~~~yHG~t~~als~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAAvI~E  232 (459)
T PRK06931        153 FSGGYHGMTHGALAVTGNLSPKNAVNGLMPGVQFMPYPHEYRCPLGIGGEAGVKALTYYFENFIEDVESGVRKPAAVILE  232 (459)
T ss_pred             ECCCcCCccHHHHhhcCCcccccCCCCCCCCcEEeCCCccccccccCCchhHHHHHHHHHHHHHHhhhcCCCceEEEEEc
Confidence            999999999999988877766666666666666666543             2323    333332   23569999999


Q ss_pred             cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      |+++++|.+.++++++++|.++|++||+++|+||+++||||+|..|+++++++.||+++++|+++||+ |+|.++.++++
T Consensus       233 Piqg~gG~~~~~~~yl~~lr~lc~~~g~LlI~DEV~tGfGRtG~~~a~~~~gv~PDivt~gK~l~gG~-Pi~av~~~~~~  311 (459)
T PRK06931        233 AIQGEGGVNPAPVEWLQKIREVTQKHGILLIVDEVQAGFARTGKMFAFEHAGIEPDIIVMSKAVGGGL-PLAVLGIKKEF  311 (459)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhcCCcCchHHHhhhcCCCCCEEEecccccCCc-ceeeeeeHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999998 99998887764


Q ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                       +.+.+..+++||++|+++++++++.|+.++++++.++.++..+++++.|+++..++| .+.++++.|.++.+++.++..
T Consensus       312 -~~~~~~~~~~T~~gnpla~aaala~L~~l~~~~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~vrG~Glm~giel~~~~~  389 (459)
T PRK06931        312 -DAWQPGGHTGTFRGNQLAMATGLTTLKILKEENLAQNAAERGEWLKAQLAELQKRYP-CIGNVRGRGLMIGIEIVDERQ  389 (459)
T ss_pred             -hhccCCCCCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEeEecCceEEEEEEccCcc
Confidence             666666788999999999999999999998889999999999999999999987774 888999999999999843210


Q ss_pred             -----------chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 -----------PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 -----------~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                 ......+...|+++|+++.+.+  ++.+|+.|++.+|++|+++++++|.+++.
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~~~Gvl~~~~~~~~~~l~~~Ppl~it~~eid~~~~~l~~~l~  453 (459)
T PRK06931        390 PADAMGSYPADGELAAAIQKACFENGLLLERGGRNGNVVRLLPPLLITQAECEEFIDRFEQALL  453 (459)
T ss_pred             cccccccCCccHHHHHHHHHHHHHCCcEEeecCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHH
Confidence                       1124568888999999997653  68999999999999999999999999987

>TIGR01885 Orn_aminotrans ornithine aminotransferase

Probab=100.00  E-value=3.7e-43  Score=331.97  Aligned_cols=341  Identities=59%  Similarity=0.988  Sum_probs=288.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.+..+..+.+.+++++|+++++.+.+++++||++|++.|+++++.++..++|...+++.|+.++.+||
T Consensus        60 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~ai~~a~~~~~~~~~~~~~~~~i~~~~~~yh  139 (401)
T TIGR01885        60 KALTEQAQKLTLSSRAFYNDVFGEFAEYVTKLFGYDKVLPMNTGAEAVETAIKLARKWGYKVKGIPENQAIIVSAKGNFH  139 (401)
T ss_pred             HHHHHHHHhccccccccCCHHHHHHHHHHHhhcCCCEEEEeCccHHHHHHHHHHHHHHhhhhcCCCCCCCEEEEECCCcC
Confidence            67778887766655545688899999999999998999999999999999999998775333343445689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+.....+++.+.....+.+...++..++++|++++++.+++++++++++++||+++++|.+.++++++++|.++|++|
T Consensus       140 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~avi~E~v~~~~G~~~~~~~~l~~l~~l~~~~  219 (401)
T TIGR01885       140 GRTLGAISMSTDPDSRTNFGPYVPGFKKIPYNNLEALEEALEDHGPNVCAFIVEPIQGEAGVVVPDDGYLKKVRELCTKH  219 (401)
T ss_pred             cccHHHHhCcCCcccccccCCCCCCceEeCCCCHHHHHHHHHhcCCCEEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence            99888888876655554455544567788999999999999876678999999999999999998899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |+++|+||+|+|++++|..+..+..++.||++++||++++| + |+|++++++++++.+....+..++++++++++++.+
T Consensus       220 ~~lli~DEv~~g~g~~G~~~~~~~~~~~~di~~~gK~l~~g~~-~ig~v~~~~~i~~~~~~~~~~~t~~~~p~~~~aa~a  298 (401)
T TIGR01885       220 NVLLIADEIQTGLGRTGKLLCVDHENVKPDIVLLGKALSGGVY-PVSAVLADDDVMLTIKPGEHGSTYGGNPLACAVAVA  298 (401)
T ss_pred             CCEEEEechhhCCCccchhhHHhhcCCCCCEEEeeccccCCCC-CcEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHH
Confidence            99999999999999999877766678899999999999976 6 999999999999888765567788999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+.++++.++.+.+.+++++.|+++.  . +.+...++.|.++.+.+++...+....++++.|.++||.+.+...+.
T Consensus       299 ~L~~i~~~~l~~~~~~~~~~~~~~L~~l~--~-~~~~~~~g~g~~~~i~~~~~~~~~~~~~l~~~l~~~Gv~v~~~~~~~  375 (401)
T TIGR01885       299 ALEVLEEEKLAENAEKLGEIFRDQLKKLP--K-PIITEVRGRGLLNAIVIDESKTGRTAWDLCLKLKEKGLLAKPTHGNI  375 (401)
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHhcc--C-CceeEEeecCeeEEEEeccCcchhHHHHHHHHHHhCCEEEEecCCCE
Confidence            99999877888899999999999998873  1 35556678899999877543211246789999999999999987889


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||+|++.++++++++++++|+++++
T Consensus       376 lRi~p~l~~t~~~i~~~l~~l~~~l~  401 (401)
T TIGR01885       376 IRLAPPLVITEEQLDEGLEIIKKVID  401 (401)
T ss_pred             EEEeCCccCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998763

This model describes the final step in the biosynthesis of ornithine from glutamate via the non-acetylated pathway. Ornithine amino transferase takes L-glutamate 5-semialdehyde and makes it into ornithine, which is used in the urea cycle, as well as in the biosynthesis of arginine. This model includes low-GC bacteria and eukaryotic species. The genes from two species are annotated as putative acetylornithine aminotransferases - one from Porphyromonas gingivalis, and the other from Staphylococcus aureus. After homology searching using BLAST it was determined that these two sequences were most closely related to ornithine aminotransferases. This model's seed includes one characterized hit, from Bacillus subtilis.

>KOG1401 consensus Acetylornithine aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=1.3e-43  Score=312.40  Aligned_cols=339  Identities=35%  Similarity=0.550  Sum_probs=294.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++.++.|.++.+.+....++++.|.+..   +.++++|++|||+|++.||+++++..  ..+++.+...+|.+++
T Consensus        79 ral~~q~~k~~hs~~~~~t~eav~l~~~l~~~~~~~~~~rvff~nsGTeAne~ALK~Ark~~--~~~~~~~~t~~Iaf~n  156 (433)
T KOG1401|consen   79 RALAEQAKKLGHSSNGYFTLEAVELEEVLSAVLGKGSAERVFFCNSGTEANETALKFARKFT--GKKHPEKKTKFIAFEN  156 (433)
T ss_pred             HHHHHHHhhheeccCccccHHHHHHHHHHHhcccCCCccEEEEecCCcHHHHHHHHHHHHhh--cccCCccceeEEEEec
Confidence            688999999999998777777889999999987   78899999999999999999998764  2232343467999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      +|||.+.+++..++++.+...+.|..+++...+++|+.++++.++.+...++++|+||+++.+|.++.+++++..|.++|
T Consensus       157 syHG~tlgals~~~~s~y~~~~~p~~p~v~~~~ynd~t~l~k~~~~h~~~IaAVIvEPiqGaGG~~p~~peFl~~L~k~C  236 (433)
T KOG1401|consen  157 SYHGRTLGALSVTGNSKYGLPFDPIAPDVVTAEYNDSTALEKLFESHKGEIAAVIVEPIQGAGGIIPADPEFLIGLRKEC  236 (433)
T ss_pred             CcCCcchhHHHhhcccccCCCCCCCCCceeecccCCHHHHHHHHHhCCCceEEEEEecccCCCCcccCCHHHHHHHHHHH
Confidence            99999999999999999999999988999999999999999999998888999999999999999999999999999999


Q ss_pred             HhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC---CCCCCCCHHHH
Q 017259          159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH---GSTFGGNPLAS  235 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~---~~~~~~~~~~~  235 (374)
                      +++|+++|.||+++||+|.|..++.++++..||+.+++|.++||+ |+|+.++++++++.+.+..+   +.||++|++++
T Consensus       237 ~~~~vl~I~DEV~tG~gR~g~~~a~e~~~~~PDI~t~aK~L~gGl-PigA~~v~~kV~~~i~~~~~l~hg~Tf~gnpLac  315 (433)
T KOG1401|consen  237 DDNGVLLIFDEVQTGLGRLGYGWAQEYFGVTPDITTVAKPLGGGL-PIGATGVRDKVAEMISPGDHLYHGGTFSGNPLAC  315 (433)
T ss_pred             hhcCceEEeehhhhCccccchHHHHHHhCcCCcceeehhhccCCc-eeEEEeehHHHHhhcCCCCccccCcccCCChhhh
Confidence            999999999999999999999999999999999999999999998 99999999999999988765   99999999999


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      .++..+++++.+.++.+++.+..+.+++.+.+...+.+.......++++++++.+...     ..++.+...+.|.++.+
T Consensus       316 sa~~~~l~~l~~~e~~k~vs~~~k~L~~~l~e~~~~~~~~i~g~~grgl~ig~~~~~p-----~~~~~d~~~~~~ll~~~  390 (433)
T KOG1401|consen  316 SAGIKVLDELKDPETLKNVSKIGKELRKLLDEYLKKTPNSICGGVGRGLVIGFEFEGP-----VYKFADAAREQGLLILT  390 (433)
T ss_pred             hHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhccCCCceeeeeeeEEEEEEEEeec-----hhhhhhhhhhhhHHHHH
Confidence            9999999999999999999999999999999988776545555578899998877543     34555555555555544


Q ss_pred             CCC----CEEEEec--CC--CCCHHHHHHHHHHHHHHHhccC
Q 017259          316 THD----TIVRLTP--PL--SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~~~----~~lRi~~--~~--~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...    ..+||.|  ..  .+++|.++++++.+.+.+. .+
T Consensus       391 ~~~~~~~~gv~i~P~~~l~~~~~~E~i~~~l~i~~~~l~-~~  431 (433)
T KOG1401|consen  391 LGKGLLEEGVRIAPIYLLTVEHTPEVIQRLLTILEKVLS-AL  431 (433)
T ss_pred             HhcccccceEEEeccccccccCcHHHHHHHHHHHHHHHH-Hh
Confidence            322    3467776  22  3458899999999998887 54

>PRK03244 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=3.9e-43  Score=331.93  Aligned_cols=327  Identities=38%  Similarity=0.602  Sum_probs=281.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++++..+....+.++...+++++|++.++.   +++++++||++|++.|+++++.+     |    +++|+..++
T Consensus        66 ~ai~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sgsea~~~al~~~~~~-----g----~~~ii~~~~  136 (398)
T PRK03244         66 EAVTRQLATLGHVSNLFATEPQIALAERLVELLGAPEGGRVFFCNSGAEANEAAFKLARLT-----G----RTKIVAAEG  136 (398)
T ss_pred             HHHHHHHHhccCccCccCCHHHHHHHHHHHHhCCCCCCCEEEEeCchHHHHHHHHHHHHHH-----C----CCeEEEECC
Confidence            57778888765544556778888999999998753   58999999999999999998642     2    378888899


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      +|||.+..+..+++.......+.+...++..++++|++++++.+.   +++++++++|++|++|.+.++++++++|.++|
T Consensus       137 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~aviiep~~~~~G~~~~~~~~l~~l~~l~  213 (398)
T PRK03244        137 GFHGRTMGALALTGQPAKRAPFEPLPGGVEHVPYGDVDALAAAVD---DDTAAVFLEPIQGEAGVVPPPAGYLAAAREIT  213 (398)
T ss_pred             CcCCccHHHHhccCCcccccCCCCCCCCceEeCCCCHHHHHHhhc---CCeEEEEEecccCCCCCcCCCHHHHHHHHHHH
Confidence            999999888877765555555555556677888889999999885   57999999999999999999999999999999


Q ss_pred             HhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      ++||+++|+||+|+||++.|..+.+..+++.||+++|||++++|+ |+|++++++++++.+....+..+|+.++++++++
T Consensus       214 ~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pDi~t~sK~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~aaa  292 (398)
T PRK03244        214 DRHGALLVLDEVQTGIGRTGAWFAHQHDGVTPDVVTLAKGLGGGL-PIGACLAFGPAADLLTPGLHGSTFGGNPVACAAA  292 (398)
T ss_pred             HHcCCEEEEeccccCCcccchHHhhhhhCCCCCEEEEchhhhCCc-ccEEEEEcHHHHhhccCCCCcCCCCCCHHHHHHH
Confidence            999999999999999999988777777788999999999999998 9999999999999888766788999999999999


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCC
Q 017259          239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD  318 (374)
Q Consensus       239 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~  318 (374)
                      .++++.+.++++.++++++++++++.|+++.  + +.+...++.|.++++.++..    ....+.+.|.++||++++...
T Consensus       293 ~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~v~g~g~~~~i~~~~~----~~~~~~~~l~~~Gv~~~~~~~  365 (398)
T PRK03244        293 LAVLDTIASEGLLENAERLGEQLRAGIEALG--H-PLVDHVRGRGLLLGIVLTAP----VAKAVEAAAREAGFLVNAVAP  365 (398)
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHHHHHhcC--C-CceeeEeeccEEEEEEEecc----HHHHHHHHHHHCCeEEeecCC
Confidence            9999988777899999999999999998763  3 24556777899999998643    577899999999999998767


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.+|++|++.++++|+++++++|+++++ ++
T Consensus       366 ~~iR~~p~~~~t~~~i~~~~~~l~~~l~-~~  395 (398)
T PRK03244        366 DVIRLAPPLIITDAQVDAFVAALPAILD-AA  395 (398)
T ss_pred             CEEEEECCCcCCHHHHHHHHHHHHHHHH-hc
Confidence            9999999999999999999999999998 54

>PRK05769 4-aminobutyrate aminotransferase; Provisional

Probab=100.00  E-value=1.1e-42  Score=329.78  Aligned_cols=333  Identities=37%  Similarity=0.662  Sum_probs=279.5

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+... .+.++...+|+++|++..+   .++++|++|||+|++.|+++++.+.    |    +++|+.+.
T Consensus        77 ~Ai~~ql~~~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~~v~f~~SGsEA~e~AlklAr~~t----g----r~~Ii~~~  148 (441)
T PRK05769         77 KAVKEQAEKFLHYSLTDFYYEPAVELAERLVEIAPGGFEKKVFFTNSGTESNEAAIKIARYHT----G----RKYIIAFL  148 (441)
T ss_pred             HHHHHHHHhccCccCcccCCHHHHHHHHHHHHhCCCCCCCEEEECCchHHHHHHHHHHHHHHh----C----CCeEEEEC
Confidence            688899988777554 3568888999999999773   5799999999999999999999763    2    48899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCCC------------------HHHHHH-HHHh--cCCcEEEEEEc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD------------------ITALEK-IFKE--SGDQIAGFLFE  135 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d------------------~~~le~-~l~~--~~~~~~~vi~~  135 (374)
                      ++|||.+..+.++++. +..+..+.|...++..+++++                  ++.+++ .+++  .++++++|++|
T Consensus       149 ~~yHG~t~~~ls~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~~~~iaavi~E  228 (441)
T PRK05769        149 GAFHGRTYGSLSLTASKPVQRKGFFPLMPGVIHVPYPNPYRNPWGIENPEECGNAVLDFIEDYLFKKLVPPEEVAAIIVE  228 (441)
T ss_pred             CCcCCccHHHHHhcCCCcccccCCCCCCCCeEEeCCCccccccccCCchHHHHHHHHHHHHHHHHhhccCCCceEEEEEC
Confidence            9999999988877653 334555656555555555421                  233555 3332  34689999999


Q ss_pred             cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      |+++.+|.+.++++++++|.++|++||+++|+||+++|++++|..+++..+++.||++++||++++|+ |+|++++++++
T Consensus       229 pv~g~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~tG~gr~G~~~a~~~~gv~pDivt~~K~l~~G~-p~gav~~~~~i  307 (441)
T PRK05769        229 PIQGEGGYVVPPKNFFKELRKLADKYGILLIDDEVQTGMGRTGKMFAIEHFGVEPDIITLAKAIAGGL-PLGAVIGRAEL  307 (441)
T ss_pred             cccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhCCCcccceehhhccCCCCCEEEEcccccCCc-ccEEEEEehhh
Confidence            99999999999999999999999999999999999999999999888888899999999999999998 99999999988


Q ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                      ++.+ ...++.||++++++++++.++++.+++ ++.++++++.+++++.|+++..++| .+..+++.|.++.+.+.+...
T Consensus       308 ~~~~-~~~~~~T~~g~p~~~aaa~a~L~~l~~-~~~~~~~~~g~~l~~~L~~l~~~~~-~~~~vrg~G~~~~i~~~~~~~  384 (441)
T PRK05769        308 MFLP-PGSHANTFGGNPVAAAAALATLEELEE-GLLENAQKLGEYLRKELKELKEKYE-FIGDVRGLGLMIGVELVKDRK  384 (441)
T ss_pred             hhcC-CCCCCCCCCcCHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeecceEEEEEEeccCCc
Confidence            7543 345788999999999999999999988 9999999999999999999887764 777889999999998843210


Q ss_pred             ---chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 ---PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ---~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         ......+.+.|+++||++.+.+.+.+|++|++.+|++|+++++++|+++++
T Consensus       385 ~~~~~~~~~~~~~~~~~Gil~~~~~~~~lr~~p~l~~t~~~id~~~~~l~~~l~  438 (441)
T PRK05769        385 EPDPKLRDKVLYEAFKRGLLLLGAGKSAIRIIPPLIITEEEADIGLEILEEAIK  438 (441)
T ss_pred             cccHHHHHHHHHHHHhCCcEEecCCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH
Confidence               113567888899999999887678999999999999999999999999987

>PRK00854 rocD ornithine--oxo-acid transaminase; Reviewed

Probab=100.00  E-value=7.9e-43  Score=330.15  Aligned_cols=337  Identities=50%  Similarity=0.813  Sum_probs=285.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.++...++...+++++|+++.+.+++++++||++|++.|+++++.++....|.+.++++|+++..+||
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~SGs~A~e~al~~a~~~~~~~~g~~~~~~~vi~~~~~~H  143 (401)
T PRK00854         64 AAMVEQAGRLTLTSRAFRNDQLAPLYEELAALTGSHKVLPMNSGAEAVETAIKAVRKWGYEVKGVPEGQAEIIVCADNFH  143 (401)
T ss_pred             HHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCceEEEECCCcC
Confidence            67888888877665555678889999999999988999999999999999999998764333354455689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+.....++..+..+..+.+...++..++++|++++++.+.   +++++|++++++|++|.+.++++++++|.++|++|
T Consensus       144 G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~i~---~~~~aii~e~~~~~~G~~~~~~~~l~~l~~l~~~~  220 (401)
T PRK00854        144 GRTLSIVGFSTDPDARGGFGPFTPGFRVVPFGDAEALEAAIT---PNTVAFLVEPIQGEAGVIIPPAGYFTRVRELCTAN  220 (401)
T ss_pred             CccHHHHhccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC---CCeEEEEEccccCCCCCcCCCHHHHHHHHHHHHHc
Confidence            998887777766666555666667788889999999999886   57999999999999999998899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+++.|..+.....++.||++++||++++|+.|+|++++++++++.+....+..+|+++++.++++.++
T Consensus       221 gi~lI~DEv~~g~g~~g~~~~~~~~g~~~D~~~~~K~l~gg~~~ig~v~~~~~~~~~l~~~~~~~t~~~~~~~~aa~~a~  300 (401)
T PRK00854        221 NVTLILDEIQTGLGRTGKLLAEEHEGIEADVTLIGKALSGGFYPVSAVLSNSEVLGVLKPGQHGSTFGGNPLACAVARAA  300 (401)
T ss_pred             CCEEEEechhhCCCCCchHhHHhhcCCCCCEEEecccccCCccCeEEEEEcHHHHhcccCCCCCCCCCcCHHHHHHHHHH
Confidence            99999999999998888766656678889999999999987449999999999999887666777888999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      |+.+.++++.++++++.+++.+.|+++..   ..+...++.|.++.+.+....  ....++++.|.++||.+.+...+++
T Consensus       301 L~~l~~~~~~~~~~~~~~~l~~~L~~~~~---~~~~~~~g~g~~~~i~~~~~~--~~~~~~~~~L~~~GV~v~~~~~~~l  375 (401)
T PRK00854        301 LKVLTEEGMIENAAEMGAYFLEGLRSIRS---NIVREVRGRGLMLAVELEPEA--GGARQYCEALKERGLLAKDTHDHTI  375 (401)
T ss_pred             HHHHHHcCHHHHHHHHHHHHHHHHHhhcc---CceEEEeccceEEEEEEecCc--hhHHHHHHHHHHCCeEEecCCCCEE
Confidence            99887777899999999999999988632   233455677888887763321  1567899999999999988767899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++|++.++++++++++++|++++.
T Consensus       376 R~~p~~~~t~e~i~~~i~~l~~~l~  400 (401)
T PRK00854        376 RLAPPLVITREQVDWALEQIAKVLA  400 (401)
T ss_pred             EEeCCcccCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999998764

>PRK02936 argD acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=1.3e-42  Score=326.08  Aligned_cols=326  Identities=38%  Similarity=0.619  Sum_probs=280.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++++..+.++.+..+...+++++|.+..+.+.+++++||++|++.|+++++.+    .|    +++|++++++||
T Consensus        52 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~sG~~a~~~A~~~a~~~----~g----~~~vi~~~~~~H  123 (377)
T PRK02936         52 KAVQEQLDDIWHVSNLFTNSLQEEVASLLAENSAGDLVFFCNSGAEANEAALKLARKH----TG----KSKIVTFEQSFH  123 (377)
T ss_pred             HHHHHHHHhccccccccCCHHHHHHHHHHHhcCCCCEEEEeCCcHHHHHHHHHHHHHh----cC----CCeEEEECCCcC
Confidence            6788888876555555667888899999998877789999999999999999988643    23    378999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+.....+++...+..++.+...++..++++|++++++.+.   +++++++++|+++++|...++++++++|.++|++|
T Consensus       124 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~ii~e~i~~~~G~~~~~~~~l~~l~~l~~~~  200 (377)
T PRK02936        124 GRTFGTMSATGQEKIKEGFGPLLPGFTHVPFNDIKALKEVMN---EEVAAVMLEVVQGEGGVIPADPAFLQEVQTLCKKF  200 (377)
T ss_pred             CCcHHhhhccCCccccccCCCCCCCceEeCCCCHHHHHHhcc---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999888877766555666666666777888899999999886   57999999999999998888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+|+++.|..+....+++.||++++||++++|+ |+|++++++++.+.+....+..++++++++++++.++
T Consensus       201 ~~~lI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~-~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~aaa~a~  279 (377)
T PRK02936        201 GALLIIDEVQTGIGRTGTLFAYEQFGLDPDIVTVAKGLGNGI-PVGAMIGKKELGTAFGPGSHGSTFGGNPLAMAAAKEV  279 (377)
T ss_pred             CCEEEEeccccCCCcCchhhHHHhhCCCCcEEEEcccccCCC-ccEEEEEcHHHHhhccCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999999887766666788899999999999998 9999999999999988766778889999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+..+++.++++++.+++++.|++....++ .+...++.|.++++.+++     ....+.+.|.++||++.+.+.+++
T Consensus       280 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~v~~~g~~~~i~~~~-----~~~~~~~~l~~~gv~v~~~g~~~l  353 (377)
T PRK02936        280 LQVIKQPSFLEEVQEKGEYFLQKLQEELEHLE-CVKNIRGKGLMIGIECTE-----EVAPVIEQLREEGLLVLSAGPNVI  353 (377)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhhCC-cEEeEeecceEEEEEecc-----hHHHHHHHHHHCCeEEecCCCCEE
Confidence            99886668899999999999999998654453 555566788899988864     367899999999999999877899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 017259          322 RLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ||+|++..+++++++++++|++++
T Consensus       354 Ri~p~~~~~~~~i~~~i~~l~~~~  377 (377)
T PRK02936        354 RLLPPLVVTKEELDQAVYLLKKVL  377 (377)
T ss_pred             EEECCcccCHHHHHHHHHHHHHhC
Confidence            999999999999999999998763

>PRK06918 4-aminobutyrate aminotransferase; Reviewed

Probab=100.00  E-value=1.6e-42  Score=330.81  Aligned_cols=337  Identities=34%  Similarity=0.621  Sum_probs=279.5

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC--C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG--Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~--~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|++++++++.+... .+.++...+++++|++..+  . ++++|++|||+|++.|+++++.+.    |    +.+|+.+.
T Consensus        77 ~ai~~q~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~~v~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~  148 (451)
T PRK06918         77 EALHKQVDQYIHTGFNVMMYEPYIELAEKLAALAPGSFDKKVLFLNSGAEAVENAVKIARKYT----K----RQGIISFS  148 (451)
T ss_pred             HHHHHHHHhccCccccccccHHHHHHHHHHHHhCCCCCCCEEEEcCCcHHHHHHHHHHHHHHh----C----CCcEEEEC
Confidence            688899988776543 3567889999999999873  2 699999999999999999998763    2    47899999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCCC-----------------HHHHHHHHHh--cCCcEEEEEEccc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKE--SGDQIAGFLFEPI  137 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~--~~~~~~~vi~~~~  137 (374)
                      ++|||.+..+.++++. ..++..+.|..+++..+|+++                 ++.+++.+.+  .+++++++++||+
T Consensus       149 ~~yHG~t~~~ls~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi  228 (451)
T PRK06918        149 RGFHGRTLMTMTMTSKVKPYKFGFGPFAPEVYKAPFPYEYRRPEGLTEEQYDDFMIEEFKNFFISEVAPETIAAVVMEPV  228 (451)
T ss_pred             CCcCccchhhhhhcCCCccccccCCCCCCCcEEcCCCccccccccCchHHHHHHHHHHHHHHHHhhcCCCceEEEEECcc
Confidence            9999999998887664 334555555555555554431                 1234444432  3468999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      ++.+|.++++++++++|.++|++||+++|+||+|+||+++|..+++..+++.||++++||++++|+ |+||+++++++++
T Consensus       229 ~g~gG~~~~~~~~l~~l~~l~~~~gillI~DEV~tg~gr~g~~~a~~~~~v~pDi~t~sK~l~~G~-pig~v~~~~~i~~  307 (451)
T PRK06918        229 QGEGGFIVPSKKFVQEVRNICSEHGILFVADEIQTGFARTGKYFAIEHFDVVPDLITVSKSLGAGV-PISGVIGRKEIMD  307 (451)
T ss_pred             cCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCcCccCceehhHhcCCCCCEEeeehhhcCCC-ccEEEEEcHHHHh
Confidence            999999999999999999999999999999999999999998777777888899999999999998 9999999999999


Q ss_pred             hcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC---
Q 017259          218 CIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA---  294 (374)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~---  294 (374)
                      .+....+..||++++++++++.++++.+.++++.+++++.++++.++|+++...+| .+..+++.|.++.+.+..+.   
T Consensus       308 ~~~~~~~~~T~~g~~l~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~l~~~~~-~~~~vrg~G~~~~~~~~~~~~~~  386 (451)
T PRK06918        308 ESAPGELGGTYAGSPLGCAAALAVLDIIEKENLNDRAIELGKVVMNRFEEMKNKYN-CIGDVRGLGAMCAFELVQDRKTK  386 (451)
T ss_pred             ccCCCCcCcCCCcCHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhCC-CceeeccceeEEEEEEccCCCcC
Confidence            88777788899999999999999999998888999999999999999999876653 66777888999888773211   


Q ss_pred             --CchhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 --LPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 --~~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                        .......+.+.|.++||.+.+.+  ++++||+|++..+++++++++++|+++++ .+
T Consensus       387 ~~~~~~~~~l~~~~~~~Gvlv~~~~~~~~~lrl~p~l~~t~~~id~~l~~l~~~l~-~~  444 (451)
T PRK06918        387 EPDKTLTANICKEANKRGLLLLSAGTYGNVIRVLMPLVITDEQLEEGLTIIEESLQ-AC  444 (451)
T ss_pred             CCcHHHHHHHHHHHHHCCeEEeecCCCCCEEEEECCCccCHHHHHHHHHHHHHHHH-HH
Confidence              01235678888899999998864  48999999999999999999999999998 54

>PTZ00125 ornithine aminotransferase-like protein; Provisional

Probab=100.00  E-value=3.1e-42  Score=326.18  Aligned_cols=344  Identities=54%  Similarity=0.946  Sum_probs=288.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.+..+..+...++++.++++.+.+.++|++||++|++.|+++++.++...+|.+.++++|++++.+||
T Consensus        54 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~SGs~A~e~al~~~~~~~~~~~~~~~~~~~vl~~~~~~H  133 (400)
T PTZ00125         54 AALINQAQKLTLTSRAFYNDVLGLAEKYITDLFGYDKVLPMNSGAEAGETALKFARKWGYEVKGIPENQAKIIFCNGNFS  133 (400)
T ss_pred             HHHHHHHHhcccccccccCHHHHHHHHHHHhCCCCCEEEEeCCcHHHHHHHHHHHHHHHHhccCCCCCCCeEEEECCCcC
Confidence            67788887776655545567888899999998888999999999999999999998654344454445589999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+......++...+...+.+...++..++++|++++++.++  .+++++|+++|+++++|.+.++++++++|.++|++|
T Consensus       134 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~--~~~~~~v~~ep~~~~~G~~~~~~~~l~~l~~l~~~~  211 (400)
T PTZ00125        134 GRTIGACSASTDPKCYNNFGPFVPGFELVDYNDVEALEKLLQ--DPNVAAFIVEPIQGEAGVIVPDDGYLKQVYELCKKY  211 (400)
T ss_pred             CccHHHHhhcCCcchhccCCCCCCCceEeCCCCHHHHHHHhC--CCCeEEEEEcCccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999888877765444444555555667778889999999986  257999999999999999998899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+++++.|..+....+++.||++++||++++|+.|+|++++++++.+.+.......++++++++++++.++
T Consensus       212 ~~lli~Dev~~g~g~~G~~~~~~~~~~~pd~~~~sK~l~~g~~~ig~v~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~  291 (400)
T PTZ00125        212 NVLLIVDEIQTGLGRTGKLLAHDHEGVKPDIVLLGKALSGGLYPISAVLANDDVMLVIKPGEHGSTYGGNPLACAVAVEA  291 (400)
T ss_pred             CCEEEEeccccCCCccchhhHHHhcCCCCCEEEEcccccCCCcCcEEEEEcHHHHhhccCCCCCCCCCcCHHHHHHHHHH
Confidence            99999999999999888766666678899999999999977449999999999999887666677889999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+.++++.++.+++.+++++.|+++.... +.+...++.|.++++.++... .....++++.|.++||.+.+...+++
T Consensus       292 l~~i~~~~~~~~~~~~~~~l~~~l~~l~~~~-~~~~~~~~~g~~~~v~~~~~~-~~~~~~~~~~l~~~Gv~v~~~~~~~l  369 (400)
T PTZ00125        292 LEVLKEEKLAENAQRLGEVFRDGLKELLKKS-PWVKEIRGKGLLNAIVFDHSD-GVNAWDLCLKLKENGLLAKPTHDNII  369 (400)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEecccEEEEEEEccCc-chHHHHHHHHHHHCCeEEeecCCCEE
Confidence            9998777888999999999999998875443 355556778899998886421 12567899999999999999878999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ||+|++..+++++++++++|.++++ ++.
T Consensus       370 Ri~~~~~~~~~~i~~~l~~l~~~l~-~~~  397 (400)
T PTZ00125        370 RFAPPLVITKEQLDQALEIIKKVLK-SFD  397 (400)
T ss_pred             EEECCccCCHHHHHHHHHHHHHHHH-HHh
Confidence            9999999999999999999999998 663

>PRK02627 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=2.2e-42  Score=326.96  Aligned_cols=332  Identities=44%  Similarity=0.733  Sum_probs=283.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++++..+....++.+...+++++|++..+.+++++++||++|++.|+++++.++ ...+  .++++|+++.++||
T Consensus        62 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~v~~~~gg~eA~~~al~~a~~~~-~~~~--~~~~~ii~~~~~yh  138 (396)
T PRK02627         62 EAIQEQAAKLIHTSNLYYIEPQEELAEKLVELSGMDKVFFCNSGAEANEAAIKLARKYG-HKKG--IEKPEIITAENSFH  138 (396)
T ss_pred             HHHHHHHhhccccccccCCHHHHHHHHHHHhhcCCCEEEECCCcHHHHHHHHHHHHHHh-cccC--CCCCeEEEECCCcC
Confidence            56777777765555557788999999999999999999999999999999999997654 1111  12378999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+.....+++...+...+.+...++..++++|++++++++.   +++++++++|+++++|...++++++++|.++|++|
T Consensus       139 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~---~~~~~vii~p~~~~~G~~~~~~~~l~~l~~l~~~~  215 (396)
T PRK02627        139 GRTLATLSATGQPKYQEGFEPLVEGFIYVPFNDIEALKAAIT---DKTAAVMLEPIQGEGGVNPADKEYLQALRELCDEN  215 (396)
T ss_pred             cccHHHHHhcCCccccccCCCCCCCceEeCCCCHHHHHHhcC---CCeEEEEEecccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999888888776665555666656677788889999999885   58999999999998887777999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |++||+||+|+|+++.|..++....++.||+++|||++++|+ |+||+++++++++.+....+..+++.++++++++.++
T Consensus       216 ~~~lI~DE~~~g~g~~g~~~~~~~~~~~pdi~t~sK~~~~G~-rig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~~~  294 (396)
T PRK02627        216 GILLILDEVQTGMGRTGKLFAYQHYGIEPDIMTLAKGLGGGV-PIGAVLAKEKVADVFTPGDHGSTFGGNPLACAAALAV  294 (396)
T ss_pred             CCEEEEechhcCCCccCceeeehhcCCCCCEEEEcchhhCCc-ccEEEEEcHHHHhccCCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999988887666666788899999999999998 9999999999999888766778899999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+..+++.++++++.+++++.|+++...+| .+...++.|.++++.++.     +..++++.|.++||.+.+.+.+++
T Consensus       295 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~i~~~~-----~~~~~~~~l~~~Gv~v~~~~~~~l  368 (396)
T PRK02627        295 IEIIEEEGLLENAAEVGEYLRAKLRELLEKYP-GIKEVRGLGLMIGIELDR-----PAAEIVKKALEKGLLINVTGDNVL  368 (396)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC-CeeeeccCcEEEEEEecC-----cHHHHHHHHHHCCeEEeecCCCEE
Confidence            99887778899999999999999988876553 455566778899988732     568899999999999999877899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ||+|++..+++++++++++|+++++
T Consensus       369 Ri~~~~~~~~~~i~~~~~~l~~~l~  393 (396)
T PRK02627        369 RLLPPLIISKEEIDEAVDRLEEVLK  393 (396)
T ss_pred             EEECCcccCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987

>PLN02974 adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=4.7e-42  Score=340.98  Aligned_cols=342  Identities=24%  Similarity=0.317  Sum_probs=273.3

Q ss_pred             ChHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHH-cccccccCCC-------
Q 017259            1 MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARK-WGYVKKKFSI-------   68 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~-~~~~~~G~~~-------   68 (374)
                      ++|+++|+.++.|..+ .+.++...+|+++|.+..+   .++++|++|||+|+|.||++++. +. ...|.+.       
T Consensus       388 ~~Ai~~Qa~rl~hv~~~~~~hepa~~LAe~L~~~~~~~~l~rVffs~sGSeAvE~AlKmA~r~y~-~~~G~~~~~~~~~~  466 (817)
T PLN02974        388 ARAVAYAAGRYGHVMFPENVHEPALRAAELLLGGPGKGWASRVFFSDNGSTAIEVALKMAFRKFI-VDHGFLENSGNEKR  466 (817)
T ss_pred             HHHHHHHHhhCCccccCccCCHHHHHHHHHHHhccCCCCCCEEEECCchHHHHHHHHHHHHHHHH-HhcCCCcccccccc
Confidence            3789999999888776 3678899999999999654   46899999999999999999964 43 3345331       


Q ss_pred             ----CccEEEEeccCCCCcccccccccCCccccccC-CCCCC-Ccee----------------ccCC--C----------
Q 017259           69 ----DEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF-GPLLP-GHLK----------------VDFG--D----------  114 (374)
Q Consensus        69 ----~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~-~~~~~-~~~~----------------~~~~--d----------  114 (374)
                          ++.+||...++|||.+.+++.+++.+.+...+ .++.. ...+                ++..  +          
T Consensus       467 ~~~~~r~kIIa~~gsYHG~T~GAms~sg~~~~~~~~~~p~~~~~~~~~~~P~~~~~~~~~~~~~p~~~~~~~~~~~~~~~  546 (817)
T PLN02974        467 GGDLIELKVLALDGSYHGDTLGAMEAQAPSVFTGFLQQPWYSGRGLFLDPPTVGMRNGRWNISLPEGFSSGLEGEETTWE  546 (817)
T ss_pred             cccCCCCEEEEECCCcCCCCHHHHhhCCchhhhcccccccccCCCcccCCCccccccccccccCCccccccccccccccc
Confidence                46899999999999999999998865554432 22110 0000                0111  0          


Q ss_pred             -------------------HHHHHHHHHh-----cCCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259          115 -------------------ITALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus       115 -------------------~~~le~~l~~-----~~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                         .+.+++.|++     .+++++++|+||+ ++.+|++.++++++++|.++|++||+++|+||
T Consensus       547 ~~~~~f~~~r~~~~~~~~~~~~le~~l~~~~~~~~~~~iAAvI~EPviqGaGGmi~~~~~yl~~lr~lc~~~gilLI~DE  626 (817)
T PLN02974        547 SRDEVFDKTRDSTPLAKAYRSYIEQQLDEYEASAKNGHIAALIIEPVLHGAGGMLLIDPLFQRALVQVCRSRKIPVIFDE  626 (817)
T ss_pred             cccccccccccchhhhHHHHHHHHHHHHhhccccCCCCEEEEEEeccccCCCCcccCCHHHHHHHHHHHHHhCCEEEEee
Confidence                               2456777753     3468999999995 89999999999999999999999999999999


Q ss_pred             cccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC------CCCCCCCCCCHHHHHHHHHHHH
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP------GEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.+..      ..+++||+++++++++++++|+
T Consensus       627 V~TGfGRtG~~fa~e~~gv~PDIi~~gKgLtgG~~Plaa~l~~~~I~~~f~~~~~~~~~~hg~Ty~gnpl~cAaala~L~  706 (817)
T PLN02974        627 VFTGLWRLGVESAWELLGCKPDIACYAKLLTGGLVPLAATLATEEVFEAFRGPSKLDALLHGHSYTAHPMGCAAAAKALQ  706 (817)
T ss_pred             cccCCCcccchhhHHhcCCCCCEEeecccccCCCCccEEEEEcHHHHHhhccccccCCcccCCCCCcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999996699999999999998852      2478999999999999999999


Q ss_pred             HHhhhcHHHHHHH----HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHHHH-HCCeEe
Q 017259          244 VIRDEKLAERSAH----LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMK-ERGILA  313 (374)
Q Consensus       244 ~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~-~~Gi~v  313 (374)
                      .++++++.+++.+    ..+++.+.|++....+ +.+.++++.|.++.+++.++..     ...+..+.+.++ ++|+++
T Consensus       707 ~~~~~~~~~~l~~~~~~l~~~l~~~l~~~l~~~-p~V~~VRg~Gl~~~iel~~~~~~~~~~~~~a~~v~~~~~~~~Gl~~  785 (817)
T PLN02974        707 WYKDPSTNPNLIPPGSRLRELWDEELVRAISSL-PNVERVVSLGTVLALELDAEGSGSGYSSLYARSVVRRLRREDGIYA  785 (817)
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHHHHHhhC-CCeeEEEeeeeEEEEEEecCCcccccchHHHHHHHHHHHHhCCEEE
Confidence            9988755555444    4455555663333445 4888999999999999954321     012457888899 999999


Q ss_pred             ccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          314 KPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       314 ~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++. ++.+|+.||+..+++++++++++|.+.+
T Consensus       786 r~~-Gnvi~l~pP~~i~~e~l~~~~~~l~~~~  816 (817)
T PLN02974        786 RPL-GNVVYLMCGPTTSPETCTRLLRKVYRRL  816 (817)
T ss_pred             Eec-CCEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence            997 4799999999999999999999998765

>TIGR00508 bioA adenosylmethionine-8-amino-7-oxononanoate transaminase

Probab=100.00  E-value=2.8e-41  Score=319.30  Aligned_cols=337  Identities=31%  Similarity=0.507  Sum_probs=278.6

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+..+ ...++...+++++|++.+  +.++++|++||++|++.|+++++.+. ..+| .+++.+|+.+++
T Consensus        68 ~ai~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~AlklAr~~~-~~~~-~~~r~~il~~~~  145 (427)
T TIGR00508        68 AAAQKQIDKMSHVMFGGFTHKPAIELCQKLVKMTPNALDCVFLADSGSVAVEVALKMALQYW-QAKG-EKNRQKFLTIRS  145 (427)
T ss_pred             HHHHHHHHhcCCccccccCCHHHHHHHHHHHhhCCCCCCEEEEeCCcHHHHHHHHHHHHHHH-HhhC-CCCccEEEEEcC
Confidence            678888888765444 356788899999999987  45799999999999999999998764 2233 344689999999


Q ss_pred             CCCCcccccccccCCc-cccccCCCCCCCceecc---------CC--CHHHHHHHHHhcCCcEEEEEEccc-cCCCCccc
Q 017259           79 CFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVD---------FG--DITALEKIFKESGDQIAGFLFEPI-QGEAGVII  145 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~---------~~--d~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~~  145 (374)
                      +|||.+..+..+++.. .++..+.+..+++..++         ++  |++++++.+.++++++++|++||+ ++.+|.+.
T Consensus       146 ~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~l~~~l~~~~~~vaavivEPv~~g~gG~~~  225 (427)
T TIGR00508       146 GYHGDTFGAMSVCDPENSMHSLYKGYLPEQIFAPAPQNRFDEEWNEEAITPLAKLMELHSDEIAAVILEPIVQGAGGMRF  225 (427)
T ss_pred             CcCCccHhhhcccCCcccccccccccCCCCeEcCCCCccccchhHHHHHHHHHHHHHhcCCcEEEEEEechhcCcCCccc
Confidence            9999998888876642 22322332222222221         12  567888888776678999999997 88899999


Q ss_pred             CChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---
Q 017259          146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---  222 (374)
Q Consensus       146 ~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---  222 (374)
                      ++++++++|.++|++||+++|+||+|+|+|++|..|..+++++.||++++||+++||+.+++.++.++++++.+...   
T Consensus       226 ~~~~~l~~l~~lc~~~~~llI~DEv~tG~Gr~G~~~~~~~~~v~pDi~~~gK~l~gG~~p~~a~~~~~~~~~~~~~~~~~  305 (427)
T TIGR00508       226 YHPTYLKRVQALCKQYDILLIADEIATGFGRTGKLFACEHAGVVPDILCVGKALTGGYMTLSATVTTDKVAQTISSGEAG  305 (427)
T ss_pred             CCHHHHHHHHHHHHHcCCEEEEeccccCCCcCCccchhhhcCCCCCEEEechhhhcCcccceEEEEcHHHHHHHhcCCCC
Confidence            99999999999999999999999999999999998888888999999999999999965899999999998888642   


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHH
Q 017259          223 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       223 --~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  300 (374)
                        .++.||.++++++++++++++.++++++.++++++.+++++.|+++.. . +.+...++.|.++.+.+.+..   ...
T Consensus       306 ~~~~~~T~~g~p~~~aaa~a~l~~l~~~~~~~~~~~~~~~l~~~L~~l~~-~-~~i~~vrg~G~~~~i~~~~~~---~~~  380 (427)
T TIGR00508       306 CFMHGPTFMGNPLACAVAEASLAILLEGEWQKQVSAIENQLKRELSPLRK-N-PVVKDVRVLGAIGVVEMYKPV---NVE  380 (427)
T ss_pred             ccccCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc-C-CCEEeEeccccEEEEEECCcc---CHH
Confidence              266788999999999999999998889999999999999999998754 3 355677888999999886443   567


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.|+++||++.+. .+.+|++|++.+|++|+++++++|++++.
T Consensus       381 ~~~~~l~~~Gv~~~~~-~~~l~~~ppl~~t~~~id~~~~~l~~~l~  425 (427)
T TIGR00508       381 ELQKKFVEQGVWIRPF-GKLIYVMPPYIITTEQLQKLTAALIEALH  425 (427)
T ss_pred             HHHHHHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence            8999999999999876 46899999999999999999999999987

All members of the seed alignment have been demonstrated experimentally to act as EC 2.6.1.62, an enzyme in the biotin biosynthetic pathway. Alternate names include 7,8-diaminopelargonic acid aminotransferase, DAPA aminotransferase, and adenosylmethionine-8-amino-7-oxononanoate aminotransferase. The gene symbol is bioA in E. coli and BIO3 in S. cerevisiae.

>PRK08297 L-lysine aminotransferase; Provisional

Probab=100.00  E-value=2.5e-41  Score=320.46  Aligned_cols=338  Identities=28%  Similarity=0.448  Sum_probs=269.0

Q ss_pred             HHHHHHHhccc--cCc-CCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccc---cccCC-CCccE
Q 017259            3 ALQEQAEKLTL--SSR-AFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYV---KKKFS-IDEAI   72 (374)
Q Consensus         3 a~~~~~~~~~~--~~~-~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~-~~~~~   72 (374)
                      |+.+++.++.+  ..+ .+.++...+++++|++..   +.++++|++||++|++.|+++++.|+..   .+|.+ .++.+
T Consensus        71 ai~~ql~~l~~~~~~~~~~~~~~~~~la~~l~~~~~p~~~~~v~f~~SGsEAve~AlKlAr~~~~~~~~~~g~~~~~r~k  150 (443)
T PRK08297         71 EFRAELGRAALNKPSNSDVYTVEMARFVDTFARVLGDPELPHLFFVDGGALAVENALKVAFDWKSRKNEARGIDPALGTK  150 (443)
T ss_pred             HHHHHHHHhhhhccccCCcCCHHHHHHHHHHHhhcCCCCCCEEEEeCchHHHHHHHHHHHHHHhhccccccCCCCCCCce
Confidence            88889987653  222 366788889999999876   3579999999999999999999877421   24531 34689


Q ss_pred             EEEeccCCCCcccccccccCCccccccCCCCCC------Cceecc-------------CCCHHHHHHHHHhcCCcEEEEE
Q 017259           73 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP------GHLKVD-------------FGDITALEKIFKESGDQIAGFL  133 (374)
Q Consensus        73 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~-------------~~d~~~le~~l~~~~~~~~~vi  133 (374)
                      |+.+.++|||.+..+.++++.......+.+...      .....+             .++++++++.+.++++++++++
T Consensus       151 ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~iAavI  230 (443)
T PRK08297        151 VLHLRGAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLRFPLPGEDLEEVEALEAEALAQARAAFERHPHDIACFI  230 (443)
T ss_pred             EEEECCCcCCcchhhhhhcCCcccccccCCCCCccccCCCCCCCCCcccccchhhHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence            999999999999999888764322221111100      000111             1135666778877778999999


Q ss_pred             EccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCH
Q 017259          134 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADK  213 (374)
Q Consensus       134 ~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~  213 (374)
                      +||+++++|.+.++++++++|.++|++||+++|+||+++||+++|..++++++++.||+++++|+++     +|.++..+
T Consensus       231 ~EPi~g~~G~~~pp~~yl~~lr~lc~~~g~llI~DEV~tGfGRtG~~~a~~~~gv~PDiv~~gK~l~-----~~a~l~~~  305 (443)
T PRK08297        231 AEPIQGEGGDNHFRPEFFAAMRELCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVRPDIVAFGKKTQ-----VCGIMAGR  305 (443)
T ss_pred             EccccCCCCCcCCCHHHHHHHHHHHHHcCCEEEEechhhccCccchHHHHHhcCCCCCEEEeccccc-----ccceecch
Confidence            9999999999999999999999999999999999999999999999999999999999999999975     23334444


Q ss_pred             HHHh----hcC-CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEE
Q 017259          214 EVML----CIQ-PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV  288 (374)
Q Consensus       214 ~~~~----~~~-~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~  288 (374)
                      ++.+    .+. ...++.||++++++++++.++++.++++++.+++++..+++++.|+++...+|....++++.|.++.+
T Consensus       306 ~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~vrg~G~~~~i  385 (443)
T PRK08297        306 RVDEVEDNVFAVSSRINSTWGGNLVDMVRARRILEVIEEDGLVENAARQGEYLLARLEELAAEFPAVVSNVRGRGLMCAF  385 (443)
T ss_pred             HHHHhhhhhccCccccCCCCCccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHCCCcceeeeccceEEEE
Confidence            4322    121 23477899999999999999999998889999999999999999999887764233378899999999


Q ss_pred             EeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          289 EFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.+..   ....+++.|+++||++.+.+.+.+|++|++.++++|+++++++|.++++ ++
T Consensus       386 ~~~~~~---~~~~~~~~l~~~Gvl~~~~~~~~lr~~P~l~~t~~eid~~l~~l~~~l~-~~  442 (443)
T PRK08297        386 DLPTTA---DRDEVIRRLWEEGVLVLPCGERSIRFRPALTVTTEEIDAAIDALRRALP-EV  442 (443)
T ss_pred             EecCHH---HHHHHHHHHHHCCEEEecCCCCeEEEECCccCCHHHHHHHHHHHHHHHH-hh
Confidence            986532   4678999999999999987778999999999999999999999999987 54

>PRK06148 hypothetical protein; Provisional

Probab=100.00  E-value=3.6e-41  Score=346.38  Aligned_cols=335  Identities=31%  Similarity=0.447  Sum_probs=279.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|++++++++...+ .+.++...+++++|++..  +.+.++|++|||+|++.|+++++.+.    |    +.+||.+.++
T Consensus       645 ~Ai~~q~~~l~~~~-~~~~~~~~~lAe~L~~~~p~~~~~v~f~nSGsEA~e~AlklAr~~t----G----r~~ii~~~~~  715 (1013)
T PRK06148        645 AAAARQAARLNTNT-RYLHDAIVAYAERLTATLPDGLTVAFFVNSGSEANSLALRLARAHT----G----QRDAIVLDHA  715 (1013)
T ss_pred             HHHHHHHhhcCCcC-CcCCHHHHHHHHHHHHhCCCCcCEEEEeCCcHHHHHHHHHHHHHhc----C----CCeEEEEcCC
Confidence            68889998874332 466888999999999987  35789999999999999999999763    3    4789999999


Q ss_pred             CCCcccccccccCCccccccCCCC-CCCc--------eeccCC--C-------HHHHHHHHH---hcCCcEEEEEEcccc
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPL-LPGH--------LKVDFG--D-------ITALEKIFK---ESGDQIAGFLFEPIQ  138 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~--d-------~~~le~~l~---~~~~~~~~vi~~~~~  138 (374)
                      |||.+..+.++++. .+...+.+. ...+        ...+++  +       .+.+++.++   .+++.+++||+||++
T Consensus       716 YHG~t~~a~s~s~~-~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~~~iAAvI~EPv~  794 (1013)
T PRK06148        716 YHGTTTELIDLSPY-KFNRKGGKGRPDHVEVAEVPDSYRGPERWPDAEHGRRFAESVAEQIAAMAAKGRGPAFFIAESIP  794 (1013)
T ss_pred             ccCCCcchhhcCch-hhcccCCCCCCCCceEcCCCCccccCCCCChhhhHHHHHHHHHHHHHhhhccCCceEEEEEcCCc
Confidence            99999998877652 222222211 1112        223443  2       145666554   244679999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccccc-CcccccCCCCCcEEEecccccCCccchhhheeCHHHHh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~-~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~  217 (374)
                      +.+|.+.++++++++|.++|++||+++|+||+++||||+|. .|+++++++.||+++++|+++||+ |+|.+++++++++
T Consensus       795 g~gG~i~pp~~yl~~lr~lc~~~g~llI~DEVqtGfGRtG~~~~a~e~~gv~PDivt~gK~lggG~-Plgav~~~~ei~~  873 (1013)
T PRK06148        795 SVAGQIFLPEGYLREVYAMVRAAGGVCIADEVQVGFGRVGSHWWAFETQGVVPDIVTMGKPIGNGH-PMGAVVTTREIAD  873 (1013)
T ss_pred             CCCCCcCCCHHHHHHHHHHHHHhCCEEEEEecccCCCCCCCcchhhhhcCCCcceeeecccccCCc-ceEEEEEcHHHHh
Confidence            99999999999999999999999999999999999999996 789999999999999999999998 9999999999999


Q ss_pred             hcCCCC-CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-
Q 017259          218 CIQPGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-  295 (374)
Q Consensus       218 ~~~~~~-~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  295 (374)
                      .+.... +..||+++++++++++++++.++++++.++.+++++++++.|+++..++| .+.++++.|.++.+++..+.. 
T Consensus       874 ~~~~g~~~~~Tf~gnpla~aaa~a~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~VrG~Gl~~gvel~~~~~~  952 (1013)
T PRK06148        874 SFDNGMEYFNTFGGNPVSCAIGLAVLDIIEDEDLQRNALEIGNYLLAGLRELQDRFD-IIGDVRGMGLFLGIELVTDRKT  952 (1013)
T ss_pred             hccCCCccccCCCCCHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCC-CceEEeeeceEEEEEecCCccc
Confidence            887543 67899999999999999999999889999999999999999999988774 888999999999999853211 


Q ss_pred             ----chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 ----PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ----~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                          ......+.+.|+++||++.+.+  .+.+||.|++.+|++++++++++|++++. ++
T Consensus       953 ~~~~~~~~~~i~~~~~~~Gvl~~~~g~~~~vlr~~Ppl~it~~~id~~l~~l~~~l~-~~ 1011 (1013)
T PRK06148        953 KAPATAIARYVKNGARERGILIGTEGPHDNVLKIRPPLIFSRADADHLLEVLDDVLA-AA 1011 (1013)
T ss_pred             cCccHHHHHHHHHHHHhCCeEEeccCCCCCEEEEeCCccCCHHHHHHHHHHHHHHHH-HH
Confidence                1235678899999999998754  48999999999999999999999999997 53

>COG0001 HemL Glutamate-1-semialdehyde aminotransferase [Coenzyme metabolism]

Probab=100.00  E-value=7.4e-41  Score=302.23  Aligned_cols=332  Identities=27%  Similarity=0.405  Sum_probs=275.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC-CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|++++++++..+.  .+++.-.++++.|.+..+ .+.+-|+||||||+..|++++|.++        +|++|+.++++|
T Consensus        76 ~Av~~~l~~G~~fg--~Pte~Ei~~Aell~~~~p~~e~vrfvnSGTEAtmsAiRlARa~T--------gR~kIikF~G~Y  145 (432)
T COG0001          76 EAVQEQLERGLSFG--APTELEVELAELLIERVPSIEKVRFVNSGTEATMSAIRLARAYT--------GRDKIIKFEGCY  145 (432)
T ss_pred             HHHHHHHHhcCCCC--CCCHHHHHHHHHHHHhcCcccEEEEecchhHHHHHHHHHHHHhh--------CCCeEEEEcCCC
Confidence            68889998886655  357778889999999885 4999999999999999999999875        459999999999


Q ss_pred             CCcccccccccCCccc-------cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEA-------IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||+....+.-.+...-       .............+||||++.+++++++.++.+++|++||+.++-|.+.|.++++++
T Consensus       146 HG~~D~~lv~agsg~~t~g~p~s~Gvp~~~a~~ti~~~yND~~al~~~~~~~g~~IAaVIvEPv~gn~g~i~p~~~Fl~~  225 (432)
T COG0001         146 HGHSDSLLVKAGSGAATLGSPSSPGVPADVAKHTLVLPYNDLEALEEAFEEYGDDIAAVIVEPVAGNMGVVPPEPGFLEG  225 (432)
T ss_pred             CCCccHHHhhcCcCcccCCCCCCCCCChhhhccEEEecCCCHHHHHHHHHHcCCcEEEEEeccccCCCCCCCCCHHHHHH
Confidence            9998877664332111       111111113477889999999999999998999999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~  230 (374)
                      |.++|++||++||+||+.+|| |.+...+...+++.||+.+++|.+|||+ |+|.+.+++++++.+.+.   .+..|+++
T Consensus       226 Lr~lt~e~G~lLI~DEViTGF-R~~~gGaq~~~gi~PDlttlGKiIGGGl-P~ga~gGr~eiM~~~~p~g~vyqaGT~sg  303 (432)
T COG0001         226 LRELTEEHGALLIFDEVITGF-RVALGGAQGYYGVEPDLTTLGKIIGGGL-PIGAFGGRAEIMEQLAPLGPVYQAGTLSG  303 (432)
T ss_pred             HHHHHHHcCcEEEEecchhhc-ccCCcccccccCcCcchhhhhhhhcCCc-ceeeeccHHHHHhhhCCCCCccccCCCCC
Confidence            999999999999999999998 4555556788999999999999999999 999999999999987764   56789999


Q ss_pred             CHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhH
Q 017259          231 NPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSA  299 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~  299 (374)
                      |+++++|+.++++.+.++ +.++++.+..+++++.|++..... ++.......+.++.+.+.+...          ....
T Consensus       304 nplamaAG~atl~~l~~~~~~y~~l~~~~~~L~~gl~~~~~~~-g~~~~v~~~gsm~~i~F~~~~~~n~~da~~sd~~~~  382 (432)
T COG0001         304 NPLAMAAGLATLEELMTEEGVYERLDALGERLAEGLRAAAERH-GIPLTVNRVGSMFGIFFTEEGVRNYADAKRSDVERF  382 (432)
T ss_pred             cHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHh-CCCeEEeeecceEEEEecCCCCCCHHHHHhhchHHH
Confidence            999999999999999874 589999999999999999998775 4666677778888877754321          1224


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..+...|+++||++.|..-...=+|  ..++++++++.+++++++++ .+
T Consensus       383 ~~~~~~~l~~GV~l~ps~~ea~flS--~ahte~di~~~~~a~~~~~~-~~  429 (432)
T COG0001         383 AKFFHHLLNRGVYLAPSQFEAGFLS--TAHTEEDIDRTLEAADEAFK-EL  429 (432)
T ss_pred             HHHHHHHHhCCcccCCccccceeee--cccCHHHHHHHHHHHHHHHH-Hh
Confidence            4566789999999999863333444  67999999999999999988 54

>PRK12389 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=7.4e-41  Score=317.03  Aligned_cols=329  Identities=27%  Similarity=0.417  Sum_probs=272.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|++++++++.+..  .+++...+++++|.+.. +.++++|++|||+|++.|+++++.+.    |    +.+|+.++++|
T Consensus        76 ~ai~~q~~~~~~~~--~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~t----g----r~~ii~~~~~y  145 (428)
T PRK12389         76 KAITEAAENGVLYG--TPTELEIEFAKMLKEAIPSLEKVRFVNSGTEAVMTTIRVARAYT----G----RTKIIKFAGCY  145 (428)
T ss_pred             HHHHHHHHhCCccC--CCCHHHHHHHHHHHHhCCCCcEEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEECCCc
Confidence            68888988865532  56888899999999876 57899999999999999999998763    3    48899999999


Q ss_pred             CCcccccccccCCcccc------ccCC-CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAI------RGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~------~~~~-~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+...++.....      .++. +...++..++++|++.+++.+++++++++++++||+++.+|.+.++++++++
T Consensus       146 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~vaavi~EPv~g~~G~~~p~~~yl~~  225 (428)
T PRK12389        146 HGHSDLVLVAAGSGPSTLGTPDSAGVPKSIAQEVITVPFNDIEALKEALDKWGDEVAAVLVEPIVGNFGIVEPKPGFLEA  225 (428)
T ss_pred             CCChHHHHHhcCCcccccCCCCCCCCCCcccCceEEcCCCCHHHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence            99998888776532221      1221 2224577788999999999998777789999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||+++|+||+++|| |++..++..++++.||+++++|+++||+ |+|.+++++++++.+.+   ..+++||++
T Consensus       226 l~~lc~~~g~llI~DEV~tG~-Rt~~~~a~~~~gv~PDivt~gK~lggG~-Pi~av~~~~~i~~~~~~~~~~~~~~T~~g  303 (428)
T PRK12389        226 VNELAHEAGALVIYDEVITAF-RFMYGGAQDLLGVEPDLTALGKIIGGGL-PIGAYGGRKDIMEQVAPLGPAYQAGTMAG  303 (428)
T ss_pred             HHHHHHHcCCEEEEEcccccc-ccCcchhhHHhCCCCCeeeechhhcCCC-ceeEEeEHHHHHhhhccCCCcccccCCcc
Confidence            999999999999999999999 8877767778899999999999999998 99999999999988853   346789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCC----------chhH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTAL----------PVSA  299 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~----------~~~~  299 (374)
                      |++++++++++|+.++++++.++++++.+++++.|+++..++| .+... +..| ++.+.+.....          ....
T Consensus       304 npl~~Aaala~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~r~~g-~~gi~~~~~~~~~~~~~~~~~~~~~  381 (428)
T PRK12389        304 NPASMAAGIACLEVLQQEGVYEKLDRLGAMLEEGILEAAEKHG-ITITINRLKG-ALTVYFTDEKVTNYDQAERSDGEAF  381 (428)
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhCC-CCEEEEecCc-EEEEEEeCCCCCChhhhcccCHHHH
Confidence            9999999999999998889999999999999999999877664 55444 5555 66666643211          0124


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..+.+.|+++||++.+.+.+.+  .|++.++++|+++++++++++++
T Consensus       382 ~~~~~~l~~~Gv~~~~~~~~~~--~~~l~~t~e~id~~~~~l~~~l~  426 (428)
T PRK12389        382 GKFFKLMLNQGINLAPSKYEAW--FLTTAHTEEDIEETLEAVDRAFA  426 (428)
T ss_pred             HHHHHHHHHCCcEeecCCCCCe--eecCCCCHHHHHHHHHHHHHHHH
Confidence            6788999999999988643333  46799999999999999999987

>TIGR00699 GABAtrns_euk 4-aminobutyrate aminotransferase, eukaryotic type

Probab=100.00  E-value=8e-41  Score=315.51  Aligned_cols=333  Identities=24%  Similarity=0.339  Sum_probs=261.9

Q ss_pred             hHHHHH--HHhccccCcCCCCCcHHHHHHHHhc----cc--CCCeEEecCChHHHHHHHHHHHHHccccc-cc-------
Q 017259            2 KALQEQ--AEKLTLSSRAFYNDKFPVFAERLTS----MF--GYDMVLPMNTGAEGVETALKLARKWGYVK-KK-------   65 (374)
Q Consensus         2 ~a~~~~--~~~~~~~~~~~~~~~~~~l~~~l~~----~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~-~G-------   65 (374)
                      +|+.++  ...+.+..+ +.++...+++++|.+    ..  +.++++|++||++|++.|+++++.++... ++       
T Consensus        81 ~Ai~~q~~~~~l~~~~~-~~~~~~~~la~~l~~~l~~~~p~~~~~v~f~~SGsEAvE~AlKlAr~~~~~~~r~~~~~~t~  159 (464)
T TIGR00699        81 KAAQSPEMATTLINRPA-LGNFPSKDWAKILKEGILKVAPKGQDQVWTGMSGSDANELAFKAAFMYYRSKQRGYQADFSE  159 (464)
T ss_pred             HHHHHHHHHHhhccccc-CCcHHHHHHHHHHHHhHHhhCCCCcCEEEEeCCcHHHHHHHHHHHHHHHHhcCCCccccccc
Confidence            567764  334444433 567778889999864    43  45799999999999999999998764111 11       


Q ss_pred             C---------CCC--ccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccC-------------------CCH
Q 017259           66 F---------SID--EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------------------GDI  115 (374)
Q Consensus        66 ~---------~~~--~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------~d~  115 (374)
                      .         ..+  +.+||.+.++|||.+..+.++++.+.+.....+. .++..+|+                   +++
T Consensus       160 ~~~~~~~~~~~~g~~r~~ii~~~~syHG~t~~als~t~~~~~~~~~~~~-~~~~~~p~p~~~~~~~~~~~~~~~~~~~~l  238 (464)
T TIGR00699       160 EENESCMDNQAPGSPDLSILSFKGAFHGRLFGSLSTTRSKPIHKLDIPA-FDWPQAPFPSLKYPLEEHVKENAKEEQRCL  238 (464)
T ss_pred             ccccccccccccCCcCCEEEEECCCcCCccHHHHHhcCCccccccCCCC-CCceecCCCCcccccccccccchhHHHHHH
Confidence            0         012  2489999999999999998887754333221111 11122111                   135


Q ss_pred             HHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCC--CcEE
Q 017259          116 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMV  193 (374)
Q Consensus       116 ~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~--~d~~  193 (374)
                      +.+++.++++++++++|++||+++.+|.+.++++++++|.++|++||+++|+||+++||+++|..|+++++++.  ||++
T Consensus       239 ~~l~~~l~~~~~~iAAvI~EPv~g~~G~~~~~~~yl~~lr~lc~~~g~lLI~DEV~tGfGrtG~~fa~e~~gv~~~PDi~  318 (464)
T TIGR00699       239 EEVEDLIKKWHKPVAAIIVEPIQSEGGDNHASPDFFRKLRDITKKHNVAFIVDEVQTGVGATGKFWAHEHWNLDDPPDMV  318 (464)
T ss_pred             HHHHHHHHhcCCcEEEEEEeCCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEeeeeeCCCCCcchhHHHhcCCCCCCCEE
Confidence            67888887766789999999999999999999999999999999999999999999999999999999999986  9999


Q ss_pred             Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC
Q 017259          194 ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF  272 (374)
Q Consensus       194 s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  272 (374)
                      ++||+++ +|+ .    +..+ .+.......++.||.+++++++++.++++.++++++.+++++..+++++.|+++...+
T Consensus       319 t~gK~lg~gG~-~----~~~~-~~~~~~~~~~~~T~~gnp~~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~  392 (464)
T TIGR00699       319 TFSKKFQTAGY-F----FHDP-AFRPNKPYRQFNTWMGDPSRALILREIIQEIKRKDLLENVAHVGDYLYTGLEDLQKKY  392 (464)
T ss_pred             EehhhhccCCc-c----ccch-hccCCCCcccccCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999996 575 2    2232 2222223457889999999999999999999888999999999999999999987776


Q ss_pred             CCceeeEE--EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          273 PNYVKEVR--GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       273 ~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      |..+.+++  +.|.++.+++++..   ....+.+.|+++|+++.+.+.+.+||.|++.++++|++.++++|.+++
T Consensus       393 ~~~i~~vRg~G~Glm~gie~~~~~---~~~~i~~~~~~~Gvl~~~~g~~~ir~~Ppl~it~~eid~~~~~l~~~~  464 (464)
T TIGR00699       393 PEFIQNLRGKGRGTFIAWDTPDEA---KRDKLLKKARNNGVNIGGCGVKAIRLRPMLVFQKHHADIFLEIISKII  464 (464)
T ss_pred             CCceeeecccCeEEEEEEecCCHH---HHHHHHHHHHHCCcEEecCCCCeEEEeCCCCCCHHHHHHHHHHHHHhC
Confidence            43677777  89999999986432   467899999999999988766899999999999999999999998763

Alternate names include GABA transaminase, gamma-amino-N-butyrate transaminase, and beta-alanine--oxoglutarate aminotransferase.

>cd00610 OAT_like Acetyl ornithine aminotransferase family

Probab=100.00  E-value=2.3e-40  Score=314.99  Aligned_cols=334  Identities=47%  Similarity=0.766  Sum_probs=279.7

Q ss_pred             hHHHHHHHhccccCcC-CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++.++.+.... +.++...+++++|+++++  .+++++++||++|++.++++++.+   ..+     ++|+++++
T Consensus        59 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~~~~sgsea~~~al~~~~~~---~~~-----~~ii~~~~  130 (413)
T cd00610          59 EALKEQLAKLTHFSLGFFYNEPAVELAELLLALTPEGLDKVFFVNSGTEAVEAALKLARAY---TGR-----KKIISFEG  130 (413)
T ss_pred             HHHHHHHHhCcCccCcccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHH---cCC-----CeEEEECC
Confidence            5677777766554432 357789999999999987  889999999999999999999753   223     89999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCC-----------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPP  147 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~  147 (374)
                      +|||........++...+...+.+...++..++++           |++.+++.++++++++++++++|+++++|.+.++
T Consensus       131 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~~~G~~~~~  210 (413)
T cd00610         131 AYHGRTLGALSLTGSKKYRGGFGPLLPGVLHVPYPYRYRPPAELADDLEALEEALEEHPEEVAAVIVEPIQGEGGVIVPP  210 (413)
T ss_pred             CcCCccHHHHHhcCCccccccCCCCCCCcEEeCCCccccchhhHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCccCC
Confidence            99999988887776554444555555567778887           8899999998665689999999999999998889


Q ss_pred             hhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc--CCCCCC
Q 017259          148 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPGEHG  225 (374)
Q Consensus       148 ~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~--~~~~~~  225 (374)
                      ++++++|.++|++||+++|+||+|+++++.|..+....+++.||++++||++++|+ |+|++++++++++.+  ......
T Consensus       211 ~~~l~~l~~l~~~~~~~li~Dev~~g~g~~g~~~~~~~~~~~~d~~t~sK~l~~g~-~~g~~~~~~~~~~~~~~~~~~~~  289 (413)
T cd00610         211 PGYLKALRELCRKHGILLIADEVQTGFGRTGKMFAFEHFGVEPDIVTLGKGLGGGL-PLGAVLGREEIMDAFPAGPGLHG  289 (413)
T ss_pred             HHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhhHhhcCCCCCeEEEcccccCcc-ccEEEEEcHHHHHhhccCCCCCC
Confidence            99999999999999999999999999988887667677788999999999999998 999999999998885  444566


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHH
Q 017259          226 STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAY  300 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~  300 (374)
                      .+++.++++++++.++++.+.++++.++++++.+++++.|+.+.... +.+...++.|.++++.+++...     .....
T Consensus       290 ~t~~~~~~~~~a~~a~l~~l~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  368 (413)
T cd00610         290 GTFGGNPLACAAALAVLEVLEEEGLLENAAELGEYLRERLRELAEKH-PLVGDVRGRGLMIGIELVKDRATKPPDKELAA  368 (413)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhC-CcEEEeecCceEEEEEEecCCCcCCcchHHHH
Confidence            78899999999999999998777889999999999999999886543 3555566788999988865310     02567


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .+++.|.++||.+.+...+.+|+++++.++++++++++++|++++
T Consensus       369 ~~~~~l~~~gv~v~~~~~~~lR~~~~~~~t~~~i~~~~~~l~~~l  413 (413)
T cd00610         369 KIIKAALERGLLLRPSGGNVIRLLPPLIITEEEIDEGLDALDEAL  413 (413)
T ss_pred             HHHHHHHHCCeEEeecCCCEEEEECCCcCCHHHHHHHHHHHHHhC
Confidence            899999999999999877899999999999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to ornithine aminotransferase, acetylornithine aminotransferase, alanine-glyoxylate aminotransferase, dialkylglycine decarboxylase, 4-aminobutyrate aminotransferase, beta-alanine-pyruvate aminotransferase, adenosylmethionine-8-amino-7-oxononanoate aminotransferase, and glutamate-1-semialdehyde 2,1-aminomutase. All the enzymes belonging to this family act on basic amino acids and their derivatives are involved in transamination or decarboxylation.

>PLN02482 glutamate-1-semialdehyde 2,1-aminomutase

Probab=100.00  E-value=8.4e-40  Score=310.53  Aligned_cols=330  Identities=24%  Similarity=0.328  Sum_probs=261.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|++++++++.+..  .+++...+++++|++.. +.+++.|++|||+|++.|+++++.+.    |    +++|+.+.++|
T Consensus       122 ~av~~ql~~~~~~~--~~~~~~~~lAe~l~~~~p~~~~v~f~~SGsEA~e~AlklAR~~t----g----r~~Ii~~~g~Y  191 (474)
T PLN02482        122 AALAETMKKGTSFG--APCLLENVLAEMVIDAVPSVEMVRFVNSGTEACMGVLRLARAYT----G----REKIIKFEGCY  191 (474)
T ss_pred             HHHHHHHhhCCCCC--CCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhc----C----CCEEEEECCcc
Confidence            68889998876543  45778889999999977 67899999999999999999999763    3    48899999999


Q ss_pred             CCcccccccc--cCCccccccCC-----CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISM--SCDNEAIRGFG-----PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~--~~~~~~~~~~~-----~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+......  ++.........     +...++..++++|++++++.+++++++++++++||++++.|.+.|+++++++
T Consensus       192 HG~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~~~~~~iAavI~Epv~g~~G~i~p~~~fl~~  271 (474)
T PLN02482        192 HGHADSFLVKAGSGVATLGLPDSPGVPKAATSATLTAPYNDLEAVKKLFEANKGEIAAVILEPVVGNSGFIVPKKEFLEG  271 (474)
T ss_pred             CCCcchhhhhcCCCccccCCCCCCCCCCCCCCCeEEecCCChHHHHHHHHhCCCceEEEEECCCCCCCCCcCCCHHHHHH
Confidence            9976443222  11111100001     1112456788899999999998777789999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||+++|+||+++|| +.|..++..++++.||+++++|+++||+ |+|.+++++++++.+.+   ..+..||++
T Consensus       272 lr~lc~~~g~lLI~DEV~tGf-R~g~~ga~~~~gv~PDi~t~gK~lggG~-Pigav~g~~ei~~~~~~~~~~~~~~T~~g  349 (474)
T PLN02482        272 LREITKENGALLVFDEVMTGF-RIAYGGAQEYFGITPDLTTLGKVIGGGL-PVGAYGGRREIMEMVAPAGPMYQAGTLSG  349 (474)
T ss_pred             HHHHHHHcCCEEEEeccccCe-ecCcchHhHHhCCCCCEEEecchhhCCC-ceEEEEEcHHHHHhhccCCCcccccCcch
Confidence            999999999999999999999 8888878888899999999999999998 99999999999988863   346789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~  300 (374)
                      +++++++++++|+.++++++.+++.++.+++++.|+++....+ ........+.++.+.+..+..          .....
T Consensus       350 npl~~aAala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~g-~~~~~~~v~g~~gi~f~~~~~~~~~~~~~~d~~~~~  428 (474)
T PLN02482        350 NPLAMTAGIHTLKRLQQPGTYEYLDKITKKLIQGILEAGKKAG-HEMCGGYISGMFGFFFTEGPVYNFADAKKSDTAKFA  428 (474)
T ss_pred             hHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhcC-CCEEEcccceEEEEEEecCCccChhhhccCCHHHHH
Confidence            9999999999999998888999999999999999999876531 211111222355555532210          01245


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.|+++||++.+..... + .|++.+|++|+++++++++++++
T Consensus       429 ~~~~~l~~~Gv~~~~~~~~~-~-~psl~ht~~dId~~l~al~~~l~  472 (474)
T PLN02482        429 RFHRGMLEEGVYLAPSQFEA-G-FTSLAHTEEDIDFTIAAAERVLA  472 (474)
T ss_pred             HHHHHHHHCCeEEeccCCCC-C-cCCCCCCHHHHHHHHHHHHHHHH
Confidence            78889999999998753221 1 37899999999999999999987

>PRK06149 hypothetical protein; Provisional

Probab=100.00  E-value=5.9e-40  Score=337.45  Aligned_cols=334  Identities=30%  Similarity=0.485  Sum_probs=273.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+++.++.+.+ .+..+...+++++|++..  +.+.++|++||++|++.|+++++.+.    |    +.+||.+..+
T Consensus       606 ~Ai~~q~~~l~~~~-~~~~~~~~elae~L~~~~p~~~~~v~f~~SGsEA~e~AlklAr~~t----g----r~~ii~~~~~  676 (972)
T PRK06149        606 AAAARQWSLLNTNS-RFHYAAVAEFSERLAALAPDGLDTVFLVNSGSEANDLAIRLAWAAS----G----RRDVVSVLEA  676 (972)
T ss_pred             HHHHHHHHhccccc-cccCHHHHHHHHHHHHhCCCCcCEEEEeCCchHHHHHHHHHHHHhc----C----CCeEEEEeCC
Confidence            67888888876543 345788899999999987  57899999999999999999998763    3    4789999999


Q ss_pred             CCCcccccccccCCcccccc-CCCC--------CCCceeccCC--C-----HHHHHHHHH---hcCCcEEEEEEccccCC
Q 017259           80 FHGRTLAAISMSCDNEAIRG-FGPL--------LPGHLKVDFG--D-----ITALEKIFK---ESGDQIAGFLFEPIQGE  140 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~-~~~~--------~~~~~~~~~~--d-----~~~le~~l~---~~~~~~~~vi~~~~~~~  140 (374)
                      |||.+.++.++++....... +.+.        .++....++.  +     .+++++.++   .+++++++||+||++++
T Consensus       677 yHG~t~ga~~~s~~~~~~~~~~~~~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~iAavI~Epv~g~  756 (972)
T PRK06149        677 YHGWTVATDAVSTSIADNPQALETRPDWVHPVESPNTYRGRFRGADSAADYVRDVVAQLEELDASGRGLAGFICEPVYGN  756 (972)
T ss_pred             CCCcChhHhhhcCCccccccccCCCCCCeEEeCCCcccCCcCCCcccHHHHHHHHHHHHHHHhhcCCceEEEEEcccccC
Confidence            99999887665432110000 0000        0111122232  2     345555554   24578999999999999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccccc-CcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~-~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      +|.+.++++++++|.++|++||+++|+||+++|||++|. +++++++++.||+++++|++++|+ |+|++++++++++.+
T Consensus       757 gG~i~~p~~yL~~l~~lc~~~g~llI~DEV~tGfGRtG~~~~a~e~~gv~PDivt~gK~lg~G~-Pl~av~~~~~i~~~~  835 (972)
T PRK06149        757 AGGIALPPGYLQQVYAAVRARGGVCIADEVQVGYGRLGHYFWGFEQQGVVPDIITMAKGMGNGH-PLGAVITRREIAEAL  835 (972)
T ss_pred             CCcccCCHHHHHHHHHHHHHcCCEEEEEeehhcCCccCccchhhhhcCCCCCEEEecccccCCe-eeEEEEEcHHHHhhh
Confidence            999999999999999999999999999999999999997 568888999999999999999998 999999999999888


Q ss_pred             CC-CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----
Q 017259          220 QP-GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----  294 (374)
Q Consensus       220 ~~-~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----  294 (374)
                      .. .....|+++|++++++++++|+.++++++.++.+++++++++.|+++..++| ++..+++.|.++.+++..+.    
T Consensus       836 ~~~~~~~sT~~gnP~~~aaala~L~~i~~e~l~~~~~~~G~~l~~~L~~l~~~~~-~i~~vrG~Gl~~gvel~~~~~~~~  914 (972)
T PRK06149        836 EAEGYFFSSTGGSPVSCRIGMAVLDVLREEKLQENARRVGDHLKARLEALADRHP-LIGAVHGMGLYLGVELVRDRQTLE  914 (972)
T ss_pred             ccCCcccCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEeecceEEEEEEecCcccCC
Confidence            64 3345678999999999999999999889999999999999999999987774 88999999999999984321    


Q ss_pred             -CchhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 -LPVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 -~~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .......+++.|+++||++.+.+  .+.+||.|++++++++++.++++|++++.
T Consensus       915 ~~~~~~~~i~~~l~~~Gvl~~~~g~~~~vl~~~Ppl~it~~~id~~~~~l~~~l~  969 (972)
T PRK06149        915 PATEETAAICDRLLELGVIMQPTGDHLNILKIKPPLCLDRESADFFVDMLDRVLT  969 (972)
T ss_pred             CChHHHHHHHHHHHhCCeEEeecCCCCCEEEEECCCcCCHHHHHHHHHHHHHHHH
Confidence             01235679999999999998865  38999999999999999999999999987

>TIGR00713 hemL glutamate-1-semialdehyde-2,1-aminomutase

Probab=100.00  E-value=7e-40  Score=311.74  Aligned_cols=330  Identities=26%  Similarity=0.425  Sum_probs=266.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|++++++++.++.  ++++...+++++|++.+ +.+++++++||++|++.|+++++.+.    |    +++|+.++++|
T Consensus        71 ~ai~~q~~~~~~~~--~~~~~~~~lae~l~~~~~~~~~v~~~~sGseA~e~Alk~ar~~~----g----r~~ii~~~~~y  140 (423)
T TIGR00713        71 EAVKEALERGTSYG--APTEAEILLAKEIISRVPSVEMVRFVNSGTEATMSAVRLARGYT----G----RDKIIKFEGCY  140 (423)
T ss_pred             HHHHHHHHhCCcCC--CCCHHHHHHHHHHHHhCCcccEEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEEcCCC
Confidence            67888888765432  45778899999999977 45799999999999999999998652    2    38999999999


Q ss_pred             CCcccccccccCCc--cccccCCCC-----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDN--EAIRGFGPL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~--~~~~~~~~~-----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+.....+++..  .....+.+.     ......++++|++++++.++++++++++++++|+++++|.+.++++++++
T Consensus       141 hG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aavi~ep~~~~~G~~~~~~~~l~~  220 (423)
T TIGR00713       141 HGHHDALLVKAGSGAATLGLPTSPGVPEDFAKLTLVLPYNDLEALEEVFEEYGEEIAGVIVEPVAGNMGVVPPKPEFLAG  220 (423)
T ss_pred             CCChhhhhccccCcccccCCCCCCCCCcccccceEEeCCCCHHHHHHHHHHcCCcEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence            99876665543321  111111111     12356677789999999998766789999999999999988888999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||+++|+||+|+|+ +.|..+....+++.||+++|||++++|+ |+|++++++++++.+..   ..+..||++
T Consensus       221 l~~l~~~~~~llI~DEv~~g~-r~g~~~~~~~~~~~pDi~t~sK~l~~G~-pig~v~~~~~i~~~~~~~~~~~~~~T~~~  298 (423)
T TIGR00713       221 LRALTEEYGSLLIFDEVMTGF-RVALGGAQEYFGVEPDLTTLGKIIGGGL-PVGAFGGRREIMERLAPEGPVYQAGTLSG  298 (423)
T ss_pred             HHHHHHHhCCEEEEEcccccc-ccCcchhHHHhCCCcchhhhhhhhcCCC-ceeeeeEHHHHHHhhCcCCCeeeccCCCC
Confidence            999999999999999999999 7776666667788999999999999998 99999999999998874   235678999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~  300 (374)
                      ++++++++.++++.++++++.+++++..+++++.|+++...+ +.+..+++.|.++.+.+..+..          .....
T Consensus       299 ~~~~~aaa~a~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~v~~~g~~~~v~~~~~~~~~~~~~~~~~~~~~~  377 (423)
T TIGR00713       299 NPLAMAAGLATLKLLDEEGVYTELDELAKRLAEGLSEVLEDT-GIPHTVNRVGSMFSLFFTEEEVTNYADAKKSDTELFA  377 (423)
T ss_pred             CHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhc-CCCeEEEeeccEEEEEEecCCCCChhhhhcccHHHHH
Confidence            999999999999998877899999999999999999887766 4666677888888887743210          01234


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+++.|+++||++.+...+.+|++++  .+++++++++++|.++++
T Consensus       378 ~~~~~l~~~Gv~v~~~~~~~~~l~~~--~t~~~i~~~~~~l~~~l~  421 (423)
T TIGR00713       378 KFFHEMLDKGVFLPPSQFEACFLSAA--HTEEDIENTIEAAEEVFA  421 (423)
T ss_pred             HHHHHHHHCCeEEecCCccceeeECC--CCHHHHHHHHHHHHHHHh
Confidence            68889999999998765567899865  799999999999999987

This enzyme, glutamate-1-semialdehyde-2,1-aminomutase (glutamate-1-semialdehyde aminotransferase, GSA aminotransferase), contains a pyridoxal phosphate attached at a Lys residue at position 283 of the seed alignment. It is in the family of class III aminotransferases.

>TIGR00707 argD acetylornithine and succinylornithine aminotransferases

Probab=100.00  E-value=1.4e-39  Score=306.05  Aligned_cols=330  Identities=40%  Similarity=0.676  Sum_probs=272.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+++.+....+..++.+...+++++|+++++.+++++++||++|++.++++++.+. ..+|  +++++|++++++||
T Consensus        50 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~~~~~~sg~~a~~~a~~~~~~~~-~~~~--~~~~~vi~~~~~yh  126 (379)
T TIGR00707        50 EALKEQLEKLVHVSNLYYTEPQEELAEKLVEHSGADRVFFCNSGAEANEAALKLARKYT-GDKG--KEKKKIIAFENSFH  126 (379)
T ss_pred             HHHHHHHhhccccccccCCHHHHHHHHHHHhhCCCCEEEEeCCcHHHHHHHHHHHHHHh-hccC--CCCCeEEEECCCcC
Confidence            56677777665555556788899999999999999999999999999999999886432 1111  11399999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |+...+...++...+...+.+...+...++++|++++++.+.   +++++++++|+++++|...++.+++++|.++|++|
T Consensus       127 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~p~~~~~g~~~~~~~~l~~i~~l~~~~  203 (379)
T TIGR00707       127 GRTMGALSATGQPKYQKGFEPLVPGFSYAPYNDIESLKKAID---DETAAVIVEPIQGEGGVNPASAEFLKALREICKDK  203 (379)
T ss_pred             CccHHHHHhcCChhhhccCCCCCCCceeeCCCCHHHHHHHhh---hCeeEEEEEccccCCCCccCCHHHHHHHHHHHHHc
Confidence            998888777766555445556556677778889999999887   47899999999887887667899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+|+++++.|..+.....+..+|+++|||++++|+ |+||+++++++++.+.......+++.++++++++.++
T Consensus       204 ~~~~i~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~aa  282 (379)
T TIGR00707       204 DALLIFDEVQTGIGRTGKFFAYEHYGIEPDIITLAKGLGGGV-PIGATLAKEEVAEAFTPGDHGSTFGGNPLACAAALAV  282 (379)
T ss_pred             CCEEEEeccccCCCccchhhhHHhcCCCCCEEEEcccccCCc-ccEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHHH
Confidence            999999999999987776545455677889999999999999 9999999999999998766677888999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.++..++.+++++++++++++|+++.... +. ...++.|.++++.+++     +..++.+.|.++||.+.+.+.+++
T Consensus       283 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~-~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gv~v~~~~~~~l  355 (379)
T TIGR00707       283 LEVIEKERLLENVKEKGDYFKERLEELGKNY-PN-KEVRGKGLMLGIELEA-----PCKDIVKKALEKGLLVNCAGPKVL  355 (379)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhhC-CC-CccccCceEEEEEecC-----cHHHHHHHHHHCCcEEeeCCCCEE
Confidence            9988766788999999999999998875443 12 2344568888887764     357899999999999999877899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHH
Q 017259          322 RLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ||++++..+++++++++++|++++
T Consensus       356 Ri~~~~~~t~~~i~~~~~~l~~~~  379 (379)
T TIGR00707       356 RFLPPLIITKEEIDEAVSALEEAI  379 (379)
T ss_pred             EEECCCcCCHHHHHHHHHHHHHhC
Confidence            999999999999999999998753

Members of this family may also act on ornithine, like ornithine aminotransferase (EC 2.6.1.13) (see MEDLINE:90337349) and on succinyldiaminopimelate, like N-succinyldiaminopmelate-aminotransferase (EC 2.6.1.17, DapC, an enzyme of lysine biosynthesis) (see MEDLINE:99175097)

>TIGR03251 LAT_fam L-lysine 6-transaminase

Probab=100.00  E-value=1.6e-39  Score=307.88  Aligned_cols=334  Identities=26%  Similarity=0.426  Sum_probs=263.4

Q ss_pred             hHHHHHHHhcccc--C-cCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccc---cccCCC-Ccc
Q 017259            2 KALQEQAEKLTLS--S-RAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYV---KKKFSI-DEA   71 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~-~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~-~~~   71 (374)
                      +|+.+++.++.+.  + ..+..+...+++++|++..   +.++++|++||++|++.|+++++.|+..   .+|.+. ++.
T Consensus        63 ~ai~~q~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~v~f~~sGsEAve~AlklAr~~t~~~~~~~g~~~~~~~  142 (431)
T TIGR03251        63 LAFRARLGAAAVNKPSNSDVYTVAMARFVDTFARVLGDPALPHLFFIEGGALAVENALKTAFDWKSRHNQARGIPAALGT  142 (431)
T ss_pred             HHHHHHHHHhhhcccccCCCCCHHHHHHHHHHHHhcCCCCcCEEEEeCCcHHHHHHHHHHHHHHhhcchhhcCCCCCCCc
Confidence            6888999887432  2 2355777888999998864   4679999999999999999999977411   124221 247


Q ss_pred             EEEEeccCCCCcccccccccCCccccccCCCCCCC----c--eeccC-------------CCHHHHHHHHHhcCCcEEEE
Q 017259           72 IIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG----H--LKVDF-------------GDITALEKIFKESGDQIAGF  132 (374)
Q Consensus        72 ~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~----~--~~~~~-------------~d~~~le~~l~~~~~~~~~v  132 (374)
                      +|+.+.++|||.+..+.++++...++..+.|....    .  ...++             ++++++++.+.+++++++++
T Consensus       143 ~ii~~~~~yHG~t~~als~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~iAav  222 (431)
T TIGR03251       143 QVLHLRQAFHGRSGYTLSLTNTDPRKTARFPKFDWPRIDNPKLTFPLDAPNLDQVIALEEEALRQARAAFAERPHDIACF  222 (431)
T ss_pred             eEEEECCccCCcchhhhhccCCccccccCCCCCCCccCCCCcccCCccccccchhhHHHHHHHHHHHHHHHhCCCcEEEE
Confidence            89999999999999998887754444333222100    0  00111             23556677777677899999


Q ss_pred             EEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeC
Q 017259          133 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD  212 (374)
Q Consensus       133 i~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~  212 (374)
                      ++||+++++|.+.++++++++|.++|++||+++|+||+++||+++|..|+++.+++.||+++++|++.     +|.++..
T Consensus       223 ivEPv~g~~G~~~~~~~~l~~l~~lc~~~g~llI~DEV~tG~GrtG~~~a~~~~gv~PDi~~~gK~~~-----~~g~~~~  297 (431)
T TIGR03251       223 IAEPIQGEGGDNHFRPEFLRAMRALCDEHDALLIFDEVQTGVGLTGTAWAYQQLGVQPDIVAFGKKTQ-----VCGIMAG  297 (431)
T ss_pred             EEeccccCCCCcCCCHHHHHHHHHHHHHcCCEEEEecchhccCccchHHHHHhcCCCCCEEEecccCc-----cceEEec
Confidence            99999999999999999999999999999999999999999999999889899999999999999963     2233344


Q ss_pred             HHH---Hhh-cC-CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEE
Q 017259          213 KEV---MLC-IQ-PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNA  287 (374)
Q Consensus       213 ~~~---~~~-~~-~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~  287 (374)
                      +++   ... +. ...+..||++++++++++.++++.+.++++.++++++.+++.+.|+++...++..+.+.++.|.++.
T Consensus       298 ~~i~~~~~~~~~~~~~~~~T~~gnpl~~aaa~a~L~~l~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~i~~vrg~G~~~~  377 (431)
T TIGR03251       298 RRVDEVADNVFAVPSRLNSTWGGNLVDMVRATRILEIIEEERLVDNARVQGAHLLARLHELAAEFPHLVSNPRGRGLMCA  377 (431)
T ss_pred             chHHHhhhhcccCccccCCCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCccceecccccceeEE
Confidence            332   221 11 2246788999999999999999999888899999999999999999987666447777888899999


Q ss_pred             EEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          288 VEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +.+++..   ....+.+.|+++||++.+.+.+.+|++|++.++++|+++++++|.+
T Consensus       378 i~~~~~~---~~~~~~~~l~~~Gvl~~~~g~~~lr~~P~l~~t~~eid~~l~~l~~  430 (431)
T TIGR03251       378 FDLPSTA---DRDEVIRQLYREGVLLLGCGERSIRFRPPLTVTREEIDAAIDAIRR  430 (431)
T ss_pred             EEeCCHH---HHHHHHHHHHhCCeEEecCCCCeEEEECCccCCHHHHHHHHHHHHh
Confidence            9886532   4567999999999999887678999999999999999999999875

Characterized members of this protein family are L-lysine 6-transaminase, also called lysine epsilon-aminotransferase (LAT). The immediate product of the reaction of this enzyme on lysine, 2-aminoadipate 6-semialdehyde, becomes 1-piperideine 6-carboxylate, or P6C. This product may be converted subsequently to pipecolate or alpha-aminoadipate, lysine catabolites that may be precursors of certain seconary metabolites.

>PRK08088 4-aminobutyrate aminotransferase; Validated

Probab=100.00  E-value=4.1e-39  Score=305.80  Aligned_cols=335  Identities=29%  Similarity=0.532  Sum_probs=275.1

Q ss_pred             hHHHHHHHhccccCcC-CCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+..+. ..++...+++++|++..+.   ++++|++||++|++.|+++++.+.    |    +.+|+.++
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~~~f~~sGsea~e~Alklar~~~----~----r~~iv~~~  135 (425)
T PRK08088         64 AAVEAQLKKLSHTCFQVLAYEPYLELCEKMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT----K----RSGVIAFT  135 (425)
T ss_pred             HHHHHHHhhCCCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCcHHHHHHHHHHHHHHh----C----CCeEEEEC
Confidence            5788888877654432 4467788999999997642   589999999999999999998652    2    26788889


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCC----C------HHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG----D------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----d------~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+..+++. ..+..++.+...++..++++    +      ++.+++.+++  ++++++++++||+++++|.+
T Consensus       136 ~~yHG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~l~~~l~~~~~~~~~aavi~Epi~~~~G~~  215 (425)
T PRK08088        136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGVSEDDAIASIERIFKNDAAPEDIAAIIIEPVQGEGGFY  215 (425)
T ss_pred             CccCCccHHHHHhhCCCCccccCCCCCCCCcEEcCCCccccCccHHHHHHHHHHHHHhccCCCceEEEEECcccCCCCCc
Confidence            9999999998887653 22344444333333333221    1      5568888863  35789999999999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||+++|+||+|+|+++.|..++++..+..||+.||||++++|+ |+||+++++++++.+.....
T Consensus       216 ~~~~~~~~~l~~l~~~~~~~lI~Dev~~g~g~~g~~~~~~~~~~~pdi~s~sK~l~~G~-rig~v~~~~~~~~~~~~~~~  294 (425)
T PRK08088        216 AASPAFMQRLRALCDEHGIMLIADEVQTGAGRTGTLFAMEQMGVAADLTTFAKSIAGGF-PLAGVTGRAEVMDAIAPGGL  294 (425)
T ss_pred             CCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCcchhHHhhcCCCCCEEEEeccccCCC-cceeeEecHHHHhhcCCCCC
Confidence            99999999999999999999999999999988887767667788999999999999998 99999999999999988778


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSA  299 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~  299 (374)
                      ..++++++++++++.+.++.+..+++.+++++..+++++.|..+...+| .+..+++.|.++|+.+.++.     .....
T Consensus       295 ~~t~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~-~~~~v~g~G~~~~l~l~~~~~~~~p~~~~~  373 (425)
T PRK08088        295 GGTYAGNPIACAAALAVLKVFEQENLLQKANALGEKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHSKPNAKLT  373 (425)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEeccceEEEEEEecCCCCCCCCHHHH
Confidence            8899999999999999999988889999999999999999999887764 56667778999999984321     01246


Q ss_pred             HHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++.+.|.++||.+.+..  .+.+|++|++..+++++++++++|+++++
T Consensus       374 ~~l~~~~~~~Gv~~~~~~~~~~~iRl~~~~~~t~~ei~~~i~~l~~~l~  422 (425)
T PRK08088        374 AQIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIAQCFD  422 (425)
T ss_pred             HHHHHHHHhCCCEEecCCCCCCEEEEECCCCcCHHHHHHHHHHHHHHHH
Confidence            789999999999887653  58999999999999999999999999987

>PRK00615 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=4.2e-39  Score=303.47  Aligned_cols=332  Identities=27%  Similarity=0.426  Sum_probs=266.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.++++++...  ..+++...+++++|.+..+  .++++|++||++|++.|+++++.+.    |    +.+|+.+.++
T Consensus        76 ~ai~~q~~~~~~~--~~~~~~~~~la~~L~~~~~~~~~~v~f~~SGsEA~e~AiklAr~~t----g----r~~ii~~~~~  145 (433)
T PRK00615         76 DAIQQGAERGTSY--GLTSEQEILFAEELFSYLGLEDHKIRFVSSGTEATMTAVRLARGIT----G----RSIIIKFLGC  145 (433)
T ss_pred             HHHHHHHHhCCCC--CCCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHhh----C----CCEEEEEcCc
Confidence            6788888876532  2557888999999999874  3699999999999999999998653    3    4789999999


Q ss_pred             CCCcc---cccccccCCcc--ccccC--CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           80 FHGRT---LAAISMSCDNE--AIRGF--GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        80 yhg~~---~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      |||.+   ..+.+.++...  ....+  .+.......++++|++++++.+.+++++++++++||++++.|.+.+++++++
T Consensus       146 yHG~td~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavI~Epv~~~~G~~~p~~~yl~  225 (433)
T PRK00615        146 YHGHADTLLQGISFSETSLDTLTHLVDTDLAHPLTLSLPYNDFQIFQTVMNSLGHRVAGVIFEPICANMGVVLPKPGFIE  225 (433)
T ss_pred             cCCCCcccCcccccCCCCcCcCCCCCCCCCCCCCeEeCCCCCHHHHHHHHHhcCCceEEEEECCCCCCCCcccCCHHHHH
Confidence            99987   44444443211  11111  1112234556788999999999876678999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFG  229 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~  229 (374)
                      +|.++|++||+++|+||+++|+ |.|..++.+.+++.||++++||+++||+ |+|++++++++++.+...   .+..||+
T Consensus       226 ~l~~lc~~~g~llI~DEv~tG~-R~G~~ga~~~~gv~PDi~~~gK~lggG~-p~~av~~~~~i~~~~~~~~~~~~~~T~~  303 (433)
T PRK00615        226 GIIQTCRRTGSLSIMDEVVTGF-RVAQGGAAAIYHVKPDITVYGKILGGGL-PAAAVVAHKSIMDHLAPEGTIFQAGTLS  303 (433)
T ss_pred             HHHHHHHHcCCEEEEEcccccc-cccHhHHHHhcCCCCCeEEEcccccCCc-ceeeeeecHHHHhhhcCCCCcccCCCCc
Confidence            9999999999999999999999 8888888888899999999999999998 999999999999888532   3567899


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeEEEEeeeEEEEeccCCC----------chh
Q 017259          230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY-VKEVRGRGLFNAVEFDKTAL----------PVS  298 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~----------~~~  298 (374)
                      ++++++++++++++.+++++++++++++.+++.++|+++.... +. +..++ .|.++.+.+.+...          ...
T Consensus       304 g~p~~~aa~la~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~-g~~v~~~r-~G~~~~i~~~~~~~~~~~~~~~~~~~~  381 (433)
T PRK00615        304 GNPLAMAAGKASINLCREQGFYTQLSTLEQNFLSPIEEMIRSQ-GFPVSLVR-YGSMFSFFFNENRPNNLAEAQLSDIEA  381 (433)
T ss_pred             ccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHc-CCCeEEEe-eceEEEEEEeCCCCCChHHHhhCCHHH
Confidence            9999999999999999888899999999999999999876553 22 44455 79999998854321          112


Q ss_pred             HHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       299 ~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ...+.+.|.++||++.+......  .++..+|++|++++++++.++++ ++.
T Consensus       382 ~~~~~~~l~~~Gv~~~~~~~~~~--~ls~~ht~~did~~~~a~~~~~~-~~~  430 (433)
T PRK00615        382 FQTFYQSAFSKGVYLSPSPFEAS--FLSSAHSMENLDYAQNVLIDSLE-KVF  430 (433)
T ss_pred             HHHHHHHHHHCCeeecCcccccc--ceecCCCHHHHHHHHHHHHHHHH-HHh
Confidence            44789999999999987532221  23367899999999999999998 654

>PRK04260 acetylornithine aminotransferase; Provisional

Probab=100.00  E-value=5.6e-39  Score=300.97  Aligned_cols=323  Identities=32%  Similarity=0.526  Sum_probs=266.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.+++.++....+.+..+...++++.|...  .+ .++|++||++|++.|+++++.+.    |    +++|++.+++|
T Consensus        51 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~--~~~~~~~~~SGseA~~~Al~~ar~~~----~----~~~vv~~~~~y  120 (375)
T PRK04260         51 QALQKQAGLIWHSPNLYLNSLQEEVAQKLIGD--KDYLAFFCNSGAEANEAAIKIARKAT----G----KQEIITFQNSF  120 (375)
T ss_pred             HHHHHHHHhcCcccCccCCHHHHHHHHHHhcC--cCCEEEEcCccHHHHHHHHHHHHHhc----C----CCeEEEECCCc
Confidence            57777777655443344455666666666542  23 47999999999999999997542    2    37899999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ||.+..+...++.......+.+....+...+++|++++++.+.   +++++++++|+++++|.+.++.+++++|.++|++
T Consensus       121 Hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~dl~~l~~~l~---~~~a~vi~e~v~~~~G~~~~~~~~l~~~~~l~~~  197 (375)
T PRK04260        121 HGRTFGSMSATGQDKIKDGFGDGVPHFSYAIFNDLNSVKALVN---KNTAAVMLELVQGESGVLPADKDFVKALADYCQE  197 (375)
T ss_pred             CcccHHHHhccCCcccCCCCCCCCCCeEEeCCCCHHHHHHhcC---CCeEEEEECCeECCCCCcCCCHHHHHHHHHHHHH
Confidence            9998887777665444444444333344445679999998885   5789999999999999998899999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      +|+++|+||+|+|+++.|..+....+++.||++||||++++|+ |+|++++++++.+.+.......++++++++++++.+
T Consensus       198 ~~~~~i~De~~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~ig~~~~~~~~~~~~~~~~~~~t~~~~~~~~~aa~a  276 (375)
T PRK04260        198 TGILLIVDEVQTGMGRTGKLYAFEHYGIEPDIFTLAKGLANGV-PVGAMLAKSSLGGAFGYGSHGSTFGGNKLSMAAASA  276 (375)
T ss_pred             cCCEEEEechhhCCCcccchhhhHhhCCCCCEEEecccccCCc-ceEEEEEcHHHHhhcCCCCCCCCCCcCHHHHHHHHH
Confidence            9999999999999988887666666788999999999999998 999999999999988876677889999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+..+++.+++++..+++++.+.++.... +.+...++.|.++|+++..     +..++.+.|.++||.+.+.+.+.
T Consensus       277 ~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~Gi~v~~~~~~~  350 (375)
T PRK04260        277 TLDIMLTAGFLEQALENGNYLQEQLQKALQDK-ETVTTVRGLGYMIGIETTA-----DLSQLVEAARDKGLIVLTAGTNV  350 (375)
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHhhC-CCeeEEeccceEEEEEecC-----cHHHHHHHHHhCCCEEecCCCCE
Confidence            99998777889999999999999998887665 3455666789999998843     46789999999999999887789


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +|++|+...+++++++++++|+++
T Consensus       351 lR~~~~~~~t~~~i~~~l~~l~~~  374 (375)
T PRK04260        351 IRLLPPLTLTKEEIEQGIAILSEV  374 (375)
T ss_pred             EEEcCCCccCHHHHHHHHHHHHHh
Confidence            999999999999999999999875

>PRK07046 aminotransferase; Validated

Probab=100.00  E-value=6.4e-39  Score=304.21  Aligned_cols=328  Identities=24%  Similarity=0.338  Sum_probs=264.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++....  .+++...+++++|++..+.+++.|++|||+|++.|+++++.+.    |    +++|+.++++||
T Consensus        98 ~Av~~q~~~~~~~~--~~~~~~~~lAe~l~~~~~~~~v~F~nSGtEA~e~AlrlAR~~T----G----r~~ii~~~g~YH  167 (453)
T PRK07046         98 RALAEQARRGLTTM--LPSEDAAWVGEELARRFGLPYWQVATTATDANRFVLRWARAVT----G----RPKILVFNGCYH  167 (453)
T ss_pred             HHHHHHHHhCCCCC--CCCHHHHHHHHHHHHHhCCCEEEEECCHHHHHHHHHHHHHHhh----C----CCEEEEECCCCC
Confidence            68888888876533  4578888999999998888999999999999999999999763    3    489999999999


Q ss_pred             Ccccccccc--cCCccccccCCC----CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           82 GRTLAAISM--SCDNEAIRGFGP----LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        82 g~~~~~~~~--~~~~~~~~~~~~----~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      |.+......  .+.+.....+.+    ....+..++++|++.+++.+.  ++++++|++||++++.|.+.++++++++|.
T Consensus       168 G~~d~~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~nd~~~l~~~l~--~~~vAavi~EPi~g~~G~~~p~~~fl~~lr  245 (453)
T PRK07046        168 GTVDDVFVDLVDGRPVQRPGLLGQVHDLTATTRVVEFNDLAALEAALA--DGDVAAVLAEPAMTNIGMVLPEPGFHEALR  245 (453)
T ss_pred             CCcHHhHhhccCCCCCCCCCCCCCCccccCceEeeCCCCHHHHHHHhC--CCCeEEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            986544332  222212212211    123467788999999999885  357999999999999999999999999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---------CCCCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---------GEHGS  226 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---------~~~~~  226 (374)
                      ++|++||+++|+||+++ | +.|.......+++.||+++++|+++||+ |+|.+++++++++.+.+         ..++.
T Consensus       246 ~lc~~~g~llI~DEV~t-f-r~g~Gg~~~~~gv~PDi~t~gK~lggG~-Pi~av~g~~~i~~~~~~~~~~~~~~~~~~~~  322 (453)
T PRK07046        246 ELTRRYGTLLVIDETHT-I-SSGPGGYTRAHGLEPDFLVVGKPIAGGV-PCAVYGFSAELAERAQAAKASAPPGHSGIGT  322 (453)
T ss_pred             HHHHHhCCEEEEEcccc-C-ccCCcchhHHhCCCccceeehhhhcCCC-cceeeeehHHHHHHHhhccccCCCCCceeCC
Confidence            99999999999999998 4 2333334456789999999999999998 99999999999888752         13567


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----------
Q 017259          227 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------  295 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------  295 (374)
                      ||+++++++++++++|+.+.++++.+++.+..+++++.|+++..++ +++..+.+.|.++.+.+.+...           
T Consensus       323 T~~gnpl~~aa~~a~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~~~  401 (453)
T PRK07046        323 TLSANALAMAAMRATLAEVMTEAAYAHMLALAARLAAGLRAVIARH-GLPWHVTRVGARVEFQFAPTPPRNGAEAAAALD  401 (453)
T ss_pred             CCcccHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeCcEEEEEEeCCCCCCHHHHhcccC
Confidence            9999999999999999999888899999999999999999987766 4677788889988887632210           


Q ss_pred             chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ......+...|+++||++.+. .+.++++|+  ++++|+++++++++++++ ++
T Consensus       402 ~~~~~~~~~~~~~~Gv~~~~~-~~~~~~~p~--~t~~did~~~~~~~~~l~-~~  451 (453)
T PRK07046        402 PELEAALHLYLLNRGVLITPF-HNMMLVCPA--TTAADVDRLVAAFDACLG-EL  451 (453)
T ss_pred             HHHHHHHHHHHHHCCCEEecc-cCcEEEeCC--CCHHHHHHHHHHHHHHHH-HH
Confidence            012346778889999999885 467888864  899999999999999987 54

>PF00202 Aminotran_3: Aminotransferase class-III; InterPro: IPR005814 Aminotransferases share certain mechanistic features with other pyridoxalphosphate-dependent enzymes, such as the covalent binding of the pyridoxalphosphate group to a lysine residue

Probab=100.00  E-value=3.5e-40  Score=303.05  Aligned_cols=286  Identities=45%  Similarity=0.781  Sum_probs=252.3

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+++++.++.+.. +.+.++...+++++|.+..  +.++++|++||++|++.|+++++.+. ..++ ..++.+|+.+++
T Consensus        39 ~ai~~~~~~~~~~~~~~~~~~~~~~la~~L~~~~p~~~~~v~f~~sGseAve~Alkla~~~~-~~~~-~~~r~~il~~~~  116 (339)
T PF00202_consen   39 EAIAEQANKLNYVSFSGFTHPEAAELAEKLAELFPGGLDRVFFANSGSEAVEAALKLARQYH-NKRA-YTGRRKILAFEG  116 (339)
T ss_dssp             HHHHHHHHHCSSCSTTTSEEHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTH-HHTTTEEEEETT
T ss_pred             hhHHHHhhhcccccccceeccchhhhhhhhhhccccccceeeeccCchHHHHHHHHHhhccc-cccc-ccCCceEEEeee
Confidence            67888888887766 4577888999999999988  67899999999999999999998443 2222 345689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHH----------HHHHHH-hcCCcEEEEEEccccCCCCcccCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA----------LEKIFK-ESGDQIAGFLFEPIQGEAGVIIPP  147 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~----------le~~l~-~~~~~~~~vi~~~~~~~~g~~~~~  147 (374)
                      +|||.+..+.++++.+.++..+.+....+..+|++++..          +++.+. .++++++++++||+++.+|.+.++
T Consensus       117 ~yHG~t~~~~s~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~g~~G~~~~~  196 (339)
T PF00202_consen  117 SYHGRTLGALSLTGNPPYRKGFGPLYPGVVFVPFPDPAADEEEQACLNALEELIAALNADEIAAVIVEPIQGEGGMIPPP  196 (339)
T ss_dssp             TB-TSSHHHHHHSSSTHHHTTTCSSSTTEEEEETTCHHHHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSBTTTTSBEE-
T ss_pred             eeeccCcccccccCCccccccccccccccccccCCccchhhhHHHHHHHHHHHHHhhcCCcEEEEEEeccccccCccccc
Confidence            999999999999888888888888888888899988766          444443 345789999999999999999999


Q ss_pred             hhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          148 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       148 ~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      ++++++|.++|++||+++|+||+++|++|+|..|+++.+++.||+++++|++++|+ |+|.++.++++++.+.+..+++|
T Consensus       197 ~~~l~~l~~lc~~~gillI~DEV~tG~gRtG~~~a~~~~gv~PDiv~~gK~l~gG~-p~sav~~~~~i~~~~~~~~~~~T  275 (339)
T PF00202_consen  197 PEYLRELRELCREHGILLIADEVQTGFGRTGKFFASEHYGVDPDIVTFGKGLGGGL-PISAVLGSEEIMEAFQPGSHGST  275 (339)
T ss_dssp             TTHHHHHHHHHHHTT-EEEEEETTTTTTTTSSSSGHHHHTSSSSEEEEEGGGGTTS-SEEEEEEEHHHHTTSCTTSSTCT
T ss_pred             cchhhehcccccccccceecccccccccccCCccceecccccCcccccccchhhhh-hcccccccchhhccccccccccc
Confidence            99999999999999999999999999999999999999999999999999999996 99999999999999988889999


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259          228 FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  291 (374)
                      |.+++++++++.+.++.++++++.+++++..+++++.|+++...+ +.+..+++.|.++.+++.
T Consensus       276 ~~g~p~~~aaa~~~l~~~~~~~~~~~~~~~g~~l~~~L~~l~~~~-~~i~~vrg~Gl~~~ie~~  338 (339)
T PF00202_consen  276 FGGNPLSCAAALATLEILEEEDLLERVRELGERLREGLRELAARY-PLIGEVRGIGLMIGIELV  338 (339)
T ss_dssp             TTT-HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHT-TTEEEEEEETTEEEEEES
T ss_pred             cccchHhhhhhhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHhC-CCeEEEeeeCeEEEEEEE
Confidence            999999999999999999999999999999999999999998887 589999999999999875

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. One of these, called class-III, includes acetylornithine aminotransferase (2.6.1.11 from EC), which catalyzes the transfer of an amino group from acetylornithine to alpha-ketoglutarate, yielding N-acetyl-glutamic-5-semi-aldehyde and glutamic acid; ornithine aminotransferase (2.6.1.13 from EC), which catalyzes the transfer of an amino group from ornithine to alpha-ketoglutarate, yielding glutamic-5-semi-aldehyde and glutamic acid; omega-amino acid--pyruvate aminotransferase (2.6.1.18 from EC), which catalyzes transamination between a variety of omega-amino acids, mono- and diamines, and pyruvate; 4-aminobutyrate aminotransferase (2.6.1.19 from EC) (GABA transaminase), which catalyzes the transfer of an amino group from GABA to alpha-ketoglutarate, yielding succinate semialdehyde and glutamic acid; DAPA aminotransferase (2.6.1.62 from EC), a bacterial enzyme (bioA), which catalyzes an intermediate step in the biosynthesis of biotin, the transamination of 7-keto-8-aminopelargonic acid to form 7,8-diaminopelargonic acid; 2,2-dialkylglycine decarboxylase (4.1.1.64 from EC), a Burkholderia cepacia (Pseudomonas cepacia) enzyme (dgdA) that catalyzes the decarboxylating amino transfer of 2,2-dialkylglycine and pyruvate to dialkyl ketone, alanine and carbon dioxide; glutamate-1-semialdehyde aminotransferase (5.4.3.8 from EC) (GSA); Bacillus subtilis aminotransferases yhxA and yodT; Haemophilus influenzae aminotransferase HI0949; and Caenorhabditis elegans aminotransferase T01B11.2.; GO: 0008483 transaminase activity, 0030170 pyridoxal phosphate binding; PDB: 2JJE_A 2CJH_A 2CIN_A 2JJH_A 2JJF_A 2JJG_A 2CJG_A 2CJD_A 3BS8_A 2YKX_C ....

>PRK00062 glutamate-1-semialdehyde aminotransferase; Provisional

Probab=100.00  E-value=8.5e-39  Score=303.27  Aligned_cols=332  Identities=26%  Similarity=0.416  Sum_probs=270.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++..  ..+..+...+|+++|++.. +.+++++++||++|++.|+++++.+.    |    +++|+.++++|
T Consensus        73 ~a~~~~~~~~~~--~~~~~~~~~~la~~L~~~~~~~~~v~~~~sGseA~e~Aik~a~~~~----g----~~~ii~~~~~y  142 (426)
T PRK00062         73 EAVIEAAEKGLS--FGAPTELEVELAELVIELVPSIEMVRMVNSGTEATMSAIRLARGYT----G----RDKIIKFEGCY  142 (426)
T ss_pred             HHHHHHHHhCCc--CCCCCHHHHHHHHHHHHhCCCCCEEEEecCHHHHHHHHHHHHHHHh----C----CCeEEEEcCcc
Confidence            678888877442  2356778889999999876 67899999999999999999998652    2    38899999999


Q ss_pred             CCcccccccccCCccc--cccCCC-----CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEA--IRGFGP-----LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~--~~~~~~-----~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+...++....  ...+.+     .......++++|++++++.+.+++++++++++||+++++|.+.++++++++
T Consensus       143 HG~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~aaiivEpv~~~~G~~~~~~~~l~~  222 (426)
T PRK00062        143 HGHADSLLVKAGSGAATLGLPDSPGVPEDFAKHTLTAPYNDLEAVEELFEEYGDEIAAVIVEPVAGNMGVVPPKPGFLEG  222 (426)
T ss_pred             CCchhhhhhccCccccccCCCCCCCCCcccccceEEcCCCCHHHHHHHHHhCCCcEEEEEEeCCcCCCCCcCCCHHHHHH
Confidence            9998666555332111  111111     112345667789999999998766789999999999999999989999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||+++|+||+|+|+ +.|..+..+.+++.||++++||++++|+ |+|++++++++++.+..   ..+..|+++
T Consensus       223 l~~l~~~~~~llI~DEv~~G~-r~g~~~~~~~~~~~pDi~~~gK~l~~G~-p~ga~~~~~~i~~~~~~~~~~~~~~T~~~  300 (426)
T PRK00062        223 LRELCDEHGALLIFDEVMTGF-RVALGGAQGYYGVTPDLTTLGKIIGGGL-PVGAFGGRREIMEQLAPLGPVYQAGTLSG  300 (426)
T ss_pred             HHHHHHHcCCEEEEeechhcc-ccCCccHHHHhCCCcchHhhhhHhhCCC-cceeeeEHHHHHHhhccCCCceecccCcC
Confidence            999999999999999999999 7777666677788999999999999998 99999999999998853   235568899


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~  300 (374)
                      ++++++++.++++.++++++.+++++..+++++.|+++..++ +.+...++.|.++.+.+.++..          .....
T Consensus       301 ~p~~~aaa~a~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~vrg~G~~~~i~l~~~~~~~~~~~~~~~~~~~~  379 (426)
T PRK00062        301 NPLAMAAGLATLKLLKEPGFYEELEALTKRLAEGLKEAAKKA-GIPLTVNRVGSMFGLFFTDEPVTNYADAKKSDTERFA  379 (426)
T ss_pred             CHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHc-CCceEEEEecceEEEEEecCCCcchhhhccccHHHHH
Confidence            999999999999999877899999999999999999887766 4677788999999998854311          01246


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+.|+++||++.+...+.++++  +.++++|+++++++|+++++ .+
T Consensus       380 ~i~~~l~~~Gv~v~~~~~~~~~~~--~~~t~~ei~~~~~~l~~~l~-~~  425 (426)
T PRK00062        380 RFFHAMLDEGVYLAPSQFEAGFVS--AAHTDEDIEKTLEAARKAFA-AL  425 (426)
T ss_pred             HHHHHHHHCCeEeecCCcCceeee--ccCCHHHHHHHHHHHHHHHH-hh
Confidence            799999999999988765677775  78999999999999999987 54

>PRK06209 glutamate-1-semialdehyde 2,1-aminomutase; Provisional

Probab=100.00  E-value=8.1e-33  Score=262.18  Aligned_cols=320  Identities=23%  Similarity=0.319  Sum_probs=238.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe-ccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~-~~~   79 (374)
                      +|++++++++....  ...+...+++++|.+.. +.++++|++||++|++.|+++++.+.    |    +.+|+.+ ..+
T Consensus        71 ~Ai~~q~~~~~~~~--~~~~~~~~la~~l~~~~p~~~~v~f~~sGseA~e~AlklAr~~t----g----r~~i~~~~~~~  140 (431)
T PRK06209         71 EAVREALQDGCNFT--RPSAIELDAAESFLELIDGADMVKFCKNGSDATSAAVRLARAYT----G----RDLVARCADHP  140 (431)
T ss_pred             HHHHHHHHhCcCCC--CCCHHHHHHHHHHHHhCCccceEEEecCHHHHHHHHHHHHHHHh----C----CCeEEEeccCc
Confidence            68889988875422  33444557899999977 56899999999999999999998763    3    3677777 566


Q ss_pred             CCCcccccccccC-CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           80 FHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        80 yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      |||........+. ......   ........++++|++++++.++++++++++|++||+++.    .++.+++++|.++|
T Consensus       141 ~h~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~d~~~l~~~l~~~~~~~aavi~Epv~g~----~~~~~~l~~l~~lc  213 (431)
T PRK06209        141 FFSTDDWFIGTTPMSAGIPA---SVSALTVTFRYNDIASLEALFEDHPGRIACVILEPATAD----EPQDGFLHEVRRLC  213 (431)
T ss_pred             cccccccccccCCCCCCCCh---hHhccccccCCCCHHHHHHHHHhCCCCEEEEEEccccCC----CCCHHHHHHHHHHH
Confidence            6653211110000 000000   011224456788999999999876678999999998754    56899999999999


Q ss_pred             HhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh--cCC------CCCCCCCCC
Q 017259          159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC--IQP------GEHGSTFGG  230 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~--~~~------~~~~~~~~~  230 (374)
                      ++||+++|+||+++|+++.+ .....++++.||++++||++++|+ ++|++++++++++.  +..      ..+++++++
T Consensus       214 ~~~g~lLI~DEv~tG~~~~~-~g~~~~~gv~PDi~t~gK~lggG~-p~~av~~~~~i~~~~~~~~~~~~~~~~~~~T~~~  291 (431)
T PRK06209        214 HENGALFILDEMITGFRWHM-RGAQKLYGIVPDLSCFGKALGNGF-AVSALAGKREYMELGGLEHTDRERVFLLSTTHGA  291 (431)
T ss_pred             HHcCCEEEEEcccccCCcCc-chhhHHhCCCcceeeehhhhcCCc-ccEEEEEHHHHHhhhcccccCCCCceeeccCCCC
Confidence            99999999999999986532 122235688999999999999998 99999999998876  311      125778899


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CC----CchhHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TA----LPVSAYDICLK  305 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~----~~~~~~~~~~~  305 (374)
                      ++++++++.++++.++++++.++++++.+++++.|+++...+ +....+++.|.++.+.+-. ..    .......+.+.
T Consensus       292 np~~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~L~~~~~~~-~~~~~vr~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (431)
T PRK06209        292 ETHALAAAIATMAIYRDEDVIERLHEQGAKLAAGVNEAAAEH-GLQDHVRVSGRPCCLTYSTLDGNGQPSQAFRTLFLQE  370 (431)
T ss_pred             CHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEeecceEEEEEecCCcccCCcHHHHHHHHHH
Confidence            999999999999999888999999999999999999887666 3665666666666554421 11    01123367888


Q ss_pred             HHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          306 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       306 l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      |+++|+++.+     ++|+  ..+|++|+++++++|+++++ .+
T Consensus       371 l~~~Gi~~p~-----l~is--~~ht~~dId~~l~~l~~~l~-~~  406 (431)
T PRK06209        371 TIRRGVLMPS-----LVVS--YAHGDADIERTIDAVHGALG-VY  406 (431)
T ss_pred             HHHCCccccc-----cccc--ccCCHHHHHHHHHHHHHHHH-HH
Confidence            9999998732     4555  67899999999999999998 76

>KOG1403 consensus Predicted alanine-glyoxylate aminotransferase [General function prediction only]

Probab=100.00  E-value=2e-33  Score=237.94  Aligned_cols=333  Identities=29%  Similarity=0.479  Sum_probs=265.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|...+++...... ++.+....+.++.|...+ +.+-++|++|||+|+++|+++++.++        ++..+|+.+..|
T Consensus        68 ~A~~kQmat~~tN~-RFlhd~lv~cA~~l~stlPeLsvc~F~NSGSEANDLALRLAR~ft--------khqDvItldHAY  138 (452)
T KOG1403|consen   68 RAGAKQMATISTNN-RFLHDELVQCARTLTSTLPELSVCFFVNSGSEANDLALRLARNFT--------KHQDVITLDHAY  138 (452)
T ss_pred             HHHHHHHhHhcccc-hhhHHHHHHHHHHHhhcCCCceEEEEecCCchhhHHHHHHHHhhc--------ccCceEEEechh
Confidence            34455555443322 244566667778877755 78889999999999999999999774        236788999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceec-cCCC--------------------HHHHHHHHHh---cCCcEEEEEEcc
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKV-DFGD--------------------ITALEKIFKE---SGDQIAGFLFEP  136 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~d--------------------~~~le~~l~~---~~~~~~~vi~~~  136 (374)
                      ||+....+-++. -.+..+-....++++++ |++|                    .+.+++.+++   .+..+++++.++
T Consensus       139 HGHl~s~mE~SP-YKF~~g~~v~kpd~VHVAPcPDvyrGK~r~~~~~~a~~~~~Yad~vk~I~~d~~~~g~gvAAfiAEs  217 (452)
T KOG1403|consen  139 HGHLQSVMEVSP-YKFNQGGGVAKPDYVHVAPCPDVYRGKFRDKMYPDADMGALYADPVKEICQDQLAKGQGVAAFIAES  217 (452)
T ss_pred             ccceeeeeeccc-eeccCCCCcCCCceeEecCCccccccccccccCCcccchhhhhhHHHHHHHHHHhcCCcHHHHHHHH
Confidence            999877766553 11111111111222222 2221                    3455666664   345789999999


Q ss_pred             ccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccccc-CcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          137 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       137 ~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~-~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      .++-+|.+.|+..+.+++.+..|.+|-+.|.||++.||||.|. .|+++.+++.||+++++|.+|.|. |++.++..+++
T Consensus       218 lQSCGGQiiPPagYFq~Va~~Vr~aGGv~IaDEVQvGFGRvG~hyWafq~y~fiPDIVtmgKpmGNGh-PVa~VattkeI  296 (452)
T KOG1403|consen  218 LQSCGGQIIPPAGYFQAVADAVRSAGGVCIADEVQVGFGRVGSHYWAFQTYNFIPDIVTMGKPMGNGH-PVAAVATTKEI  296 (452)
T ss_pred             HHhcCCcccCchhHHHHHHHHHhcCCCeEEeehhhhcccccchhhhhhhhhccccchheecccCCCCC-eeeEEeccHHH
Confidence            9999999999999999999999999999999999999999995 789999999999999999999999 99999999999


Q ss_pred             HhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          216 MLCIQPG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       216 ~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      .+++...  ....||++|+++++++++.++..++++++++.+..++++.+.|+.+..+. .++.+.++.|+|+++++-.+
T Consensus       297 A~Af~atgv~YFNTyGGnPVsCAv~laVm~v~e~E~Lq~ha~~vG~~L~~lL~~~k~kh-~~IGDvRGvGLFiGIdLVkD  375 (452)
T KOG1403|consen  297 AQAFHATGVEYFNTYGGNPVSCAVGLAVMRVCEDENLQEHAQQVGEKLEVLLRRLKQKH-ECIGDVRGVGLFIGIDLVKD  375 (452)
T ss_pred             HHHhccccceehhccCCCchhHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhhhc-cceeccccceEEEeeeeecc
Confidence            9998753  34568999999999999999999999999999999999999999998887 59999999999999998443


Q ss_pred             CC-----chhHHHHHHHHHHC-CeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          294 AL-----PVSAYDICLKMKER-GILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       294 ~~-----~~~~~~~~~~l~~~-Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..     ...+..+..+|++. +|+++..+  .+.+.|-||...+++++++.+..|++++.
T Consensus       376 ~~tRtP~tk~A~~~v~rlke~y~VLlsaDGPh~NilKiKPPmCFneena~e~v~~ld~iLT  436 (452)
T KOG1403|consen  376 RKTRTPDTKEAHWVVNRLKELYRVLLSADGPHRNILKIKPPMCFNEENADEFVLGLDEILT  436 (452)
T ss_pred             cccCCCcHHHHHHHHHHHHHhhhEEEecCCCCCceeecCCCcccChhhHHHHHHHHHHHHH
Confidence            32     23455577777765 79887653  68999999999999999999999999987

>COG0436 Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=100.00  E-value=2.6e-33  Score=261.23  Aligned_cols=316  Identities=17%  Similarity=0.173  Sum_probs=232.8

Q ss_pred             hHHHHHHHhcc--ccCcCCCCCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLT--LSSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +++.+++..+.  ++.+.+..++++.+++++.+.++    .+ +++.|+|+++|+..++.++     ..+|     |+|+
T Consensus        48 ~a~~~a~~~~~~~Y~~~~G~~~LReaia~~~~~~~~~~~~~~~eiivt~Ga~~al~~~~~a~-----~~pG-----DeVl  117 (393)
T COG0436          48 EAAIEALEEGGTHYTPSAGIPELREAIAEKYKRRYGLDVDPEEEIIVTAGAKEALFLAFLAL-----LNPG-----DEVL  117 (393)
T ss_pred             HHHHHHHhcccCCCCCCCCCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCCHHHHHHHHHHHh-----cCCC-----CEEE
Confidence            56666666653  33334656666667777777654    33 4999999999999999999     6777     9999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      +++|+|..+......+++.+......... .++.    .|+++++++++   ++|+++++++++||||.+. +++.+++|
T Consensus       118 ip~P~Y~~y~~~~~~~gg~~v~v~l~~~~-~~f~----~d~~~l~~~i~---~ktk~i~ln~P~NPTGav~-~~~~l~~i  188 (393)
T COG0436         118 IPDPGYPSYEAAVKLAGGKPVPVPLDEEE-NGFK----PDLEDLEAAIT---PKTKAIILNSPNNPTGAVY-SKEELKAI  188 (393)
T ss_pred             EeCCCCcCHHHHHHhcCCEEEEEeCCcCc-cCCc----CCHHHHHhhcC---ccceEEEEeCCCCCcCcCC-CHHHHHHH
Confidence            99999988887777777665443210000 0111    18999999998   5899999999999999888 89999999


Q ss_pred             HHHHHhcCCEEEEeccccCCccccc-Cccc-ccCCC---CCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGR-MLAS-DWEEV---RPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGST  227 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~-~~~~-~~~~~---~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~  227 (374)
                      +++|++||++||+||+|.++.+.+. ..+. +..+.   ...+.||||.++ .|| |+||++++ +++.+.+.......+
T Consensus       189 ~~~a~~~~i~ii~DEiY~~l~yd~~~~~s~~~~~~~~~~~i~i~s~SK~~~mtGw-RvG~~v~~~~~l~~~~~~~~~~~~  267 (393)
T COG0436         189 VELAREHDIIIISDEIYEELVYDGAEHPSILELAGARDRTITINSFSKTYGMTGW-RIGWVVGPPEELIAALRKLKSYLT  267 (393)
T ss_pred             HHHHHHcCeEEEEehhhhhcccCCCCcCCHhhcCCCcceEEEEeccccccccccc-ceeEeecChHHHHHHHHHHHHhcc
Confidence            9999999999999999999877774 2222 22221   122448999999 699 99999988 778887775556777


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      ++.+.++|.++.++|+.-...    ...+.++++++.+.+.|.+..    +..... +..+.|.|..++...   +..+|
T Consensus       268 ~~~~~~~Q~aa~~aL~~~~~~~~~~~~~~~~~~rrd~l~~~l~~~~----g~~~~~~p~Ga~Y~~~~i~~~~---d~~~f  340 (393)
T COG0436         268 SCAPTPAQYAAIAALNGPQSDEVVEEMREEYRERRDLLVEALNEIG----GLSVVKPPEGAFYLFPKIPELL---DSEEF  340 (393)
T ss_pred             cCCCHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHhcC----CeeeccCCCeeEEEEeecCCCC---CHHHH
Confidence            899999999999999854221    233445566666666665542    222223 234566666666533   78899


Q ss_pred             HHHHHHC-CeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          303 CLKMKER-GILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       303 ~~~l~~~-Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+|+++ ||.+.|+.       .+++|++  +..+.+++++++++|.+.++
T Consensus       341 ~~~Ll~~~gV~v~PG~~Fg~~~g~~~vRis--~~~~~~~l~~a~~rl~~~~~  390 (393)
T COG0436         341 AKKLLEEAGVAVVPGSGFGEPPGEGYVRLS--LATSEETLEEALRRLARFLA  390 (393)
T ss_pred             HHHHHHhCCEEEecccccCCCCCCCeEEEE--EecCHHHHHHHHHHHHHHHH
Confidence            9999876 89999852       3799999  66777999999999999887

>PLN02822 serine palmitoyltransferase

Probab=99.97  E-value=2.7e-30  Score=247.62  Aligned_cols=311  Identities=19%  Similarity=0.202  Sum_probs=228.4

Q ss_pred             hHHHHHHHhc-cccC----cCCCCCcHHHHHHHHhcccCCCe-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            2 KALQEQAEKL-TLSS----RAFYNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~-~~~~----~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      +|+.+++++. ..++    .+++.+.+.+|+++|+++++.++ ++++ +|..++..+++.+     .++|     |.|+ 
T Consensus       130 ea~~~al~~~G~g~~g~r~~yg~~~~~~~Lee~La~~~~~~~~i~~s-~G~~a~~sai~a~-----~~~g-----d~Ii-  197 (481)
T PLN02822        130 ESCTSALEKYGVGSCGPRGFYGTIDVHLDCETKIAKFLGTPDSILYS-YGLSTIFSVIPAF-----CKKG-----DIIV-  197 (481)
T ss_pred             HHHHHHHHHhCCCCcccCccccCHHHHHHHHHHHHHHhCCCCEEEEC-CHHHHHHHHHHHh-----CCCC-----CEEE-
Confidence            6778888773 3222    23567889999999999997654 5555 5555788888866     5666     7777 


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC------CcE-EEEEEccccCCCCcccCCh
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG------DQI-AGFLFEPIQGEAGVIIPPD  148 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~~-~~vi~~~~~~~~g~~~~~~  148 (374)
                      .++.||........+++            .++..++++|.++++..+++..      +++ ++++++++++++|.+.+  
T Consensus       198 ~d~~~H~s~~~~~~ls~------------~~~~~~~~nd~~~l~~~l~~~~~~~~~~~~~~~~Ivve~i~~~~G~i~~--  263 (481)
T PLN02822        198 ADEGVHWGIQNGLYLSR------------STIVYFKHNDMESLRNTLEKLTAENKRKKKLRRYIVVEAIYQNSGQIAP--  263 (481)
T ss_pred             EeCCccHHHHHHHHHcC------------CeEEEECCCCHHHHHHHHHHHhhhhcccCCCcEEEEEecCCCCCCCccC--
Confidence            45668877655554443            3456677888888888776421      234 89999999999999998  


Q ss_pred             hHHHHHHHHHHhcCCEEEEecccc--CCcccccCcccccCCC---CCcEE--EecccccCCccchhhheeCHHHHhhcCC
Q 017259          149 GYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEEV---RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       149 ~~l~~l~~l~~~~~i~li~Dea~~--~~~~~g~~~~~~~~~~---~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~  221 (374)
                        +++|.++|++||++||+||+|+  .++++|.. ...++++   .+|++  ||||+++.   ..||+++++++++.++.
T Consensus       264 --L~~i~~l~~k~~~~LIvDEa~s~gvlG~~G~G-~~e~~~v~~~~~dii~~s~sKalg~---~GG~i~g~~~ii~~~~~  337 (481)
T PLN02822        264 --LDEIVRLKEKYRFRVLLDESNSFGVLGKSGRG-LSEHFGVPIEKIDIITAAMGHALAT---EGGFCTGSARVVDHQRL  337 (481)
T ss_pred             --HHHHHHHHHHcCCEEEEECCccccccCCCCCC-hHHHcCCCCCCCeEEEecchhhhhh---CCeEEEcCHHHHHHHHh
Confidence              9999999999999999999998  34555654 3455555   56776  48899971   22568899999998887


Q ss_pred             CCCCCCCCCC--HHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---
Q 017259          222 GEHGSTFGGN--PLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---  295 (374)
Q Consensus       222 ~~~~~~~~~~--~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---  295 (374)
                      ...+++|+++  ++.++|+.++++.+.. ++..++++++++++++.|++..    ++.....+.+.++++.+++...   
T Consensus       338 ~~~~~~fsa~lPp~~~~Aa~~aL~~l~~~~~~~~~l~~~~~~l~~~L~~~~----g~~~~~~~~spi~~l~l~~~~~~~~  413 (481)
T PLN02822        338 SSSGYVFSASLPPYLASAAITAIDVLEDNPSVLAKLKENIALLHKGLSDIP----GLSIGSNTLSPIVFLHLEKSTGSAK  413 (481)
T ss_pred             cCCceeeccccCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CcccCCCCCCCEEEEEeCCCccccc
Confidence            6677788765  7788888899988765 4688899999999999988752    1211223456677777753200   


Q ss_pred             --chhHHHHHHHHH-HCCeEeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 --PVSAYDICLKMK-ERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 --~~~~~~~~~~l~-~~Gi~v~~~~---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                        .....++++.|+ ++||.+.+..         +.++|++++..++++|+++++++|+++++ ++
T Consensus       414 ~~~~~~~~~~~~Ll~e~GV~v~~~~~~~~~~~~~~~~lRi~is~~~t~edI~~~~~~l~~~~~-~~  478 (481)
T PLN02822        414 EDLSLLEHIADRMLKEDSVLVVVSKRSTLDKCRLPVGIRLFVSAGHTESDILKASESLKRVAA-SV  478 (481)
T ss_pred             chHHHHHHHHHHHHhcCCEEEEeeCCCCcCCCCCCCcEEEEECCCCCHHHHHHHHHHHHHHHH-HH
Confidence              012467999998 7799998641         34799998889999999999999999987 54

>PRK06207 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2.9e-29  Score=237.22  Aligned_cols=304  Identities=14%  Similarity=0.156  Sum_probs=208.1

Q ss_pred             CCCCcHHHHHHHHhcccC----C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG----Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++++.+|    . +++++|+|+++++..++.++     ..+|     |+|++.+|+|.++...+...+.
T Consensus        79 G~~~LR~aia~~l~~~~g~~~~~~~~I~it~Ga~~al~~~~~~l-----~~~G-----d~Vlv~~P~y~~~~~~~~~~g~  148 (405)
T PRK06207         79 GDADIRELLAARLAAFTGAPVDAADELIITPGTQGALFLAVAAT-----VARG-----DKVAIVQPDYFANRKLVEFFEG  148 (405)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhHHHHHHHcCC
Confidence            445567778888877655    3 68999999999999999988     5677     9999999999887655544433


Q ss_pred             CccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...... ......+   ..+ .|+++++++++   ++++++++++++||+|.+. +.+.+++|+++|++||++||+||+|
T Consensus       149 ~v~~v~-~~~~~~~---~~~~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~-s~e~l~~l~~~a~~~~~~iI~De~Y  220 (405)
T PRK06207        149 EMVPVQ-LDYLSAD---KRAGLDLDQLEEAFK---AGVRVFLFSNPNNPAGVVY-SAEEIAQIAALARRYGATVIVDQLY  220 (405)
T ss_pred             EEEEEe-ccccCcc---cCCCcCHHHHHHhhh---hcCeEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEeccc
Confidence            211110 0000000   001 17889998886   3578888888889999888 8999999999999999999999999


Q ss_pred             cCCcccccCc-ccccCCC-CCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          172 SGLARSGRML-ASDWEEV-RPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       172 ~~~~~~g~~~-~~~~~~~-~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      .++.+.+..+ ....... ...   +.||||.++ +|+ |+||+++++++.+.+.........+.+.+++.++.++++.-
T Consensus       221 ~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~lpGl-RiG~ii~~~~l~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~  299 (405)
T PRK06207        221 SRLLYDGTSYTHLRALPIDPENVITIMGPSKTESLSGY-RLGVAFGSPAIIDRMEKLQAIVSLRAAGYSQAVLRTWFSEP  299 (405)
T ss_pred             cccccCCCCCCchhcCCCCcCcEEEEecchhhccCccc-ceEEEEcCHHHHHHHHHHHhHhccCCCHHHHHHHHHHHhCc
Confidence            9875545322 1111111 122   338999999 899 99999999998888875444445566778888887777531


Q ss_pred             h--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC-----
Q 017259          246 R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-----  317 (374)
Q Consensus       246 ~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----  317 (374)
                      .  -++..+..+++++.+.+.|+    .++++....+..|.|+|+.++...  .+..++++.|+ ++||.+.|+.     
T Consensus       300 ~~~~~~~~~~~~~~r~~l~~~L~----~~~~~~~~~p~gg~fl~~~l~~~~--~~~~~~~~~l~~~~gV~v~pG~~F~~~  373 (405)
T PRK06207        300 DGWMKDRIARHQAIRDDLLRVLR----GVEGVFVRAPQAGSYLFPRLPRLA--VSLHDFVKILRLQAGVIVTPGTEFSPH  373 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----cCCCceecCCCeeEEEEEeCcccC--CCHHHHHHHHHHhcCEEEeCchHhCCC
Confidence            0  01223333333333433333    222222222345788998886421  15678999997 6799999863     


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       .+++||+++  .+.+++++++++|+++++ ..
T Consensus       374 ~~~~~Ris~~--~~~~~l~~al~rl~~~l~-~~  403 (405)
T PRK06207        374 TADSIRLNFS--QDHAAAVAAAERIAQLIE-RY  403 (405)
T ss_pred             CCCeEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence             579999965  478999999999999987 54

>PRK07324 transaminase; Validated

Probab=99.97  E-value=3.2e-29  Score=234.50  Aligned_cols=314  Identities=18%  Similarity=0.230  Sum_probs=212.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++......  +.......+|++.+++++   ..+++++|+|+++|+..++..+     ..+|     |+|++..|
T Consensus        45 ~~~~~~~~~~~~~--Y~~~~G~~~lr~~ia~~~~~~~~~~vi~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~P  112 (373)
T PRK07324         45 EAFYQELGQKKLT--YGWIEGSPEFKEAVASLYQNVKPENILQTNGATGANFLVLYAL-----VEPG-----DHVISVYP  112 (373)
T ss_pred             HHHHHHHhcCCcc--CCCCCCCHHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCC
Confidence            3445555442221  122334566777777754   4578999999999999999887     5667     99999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      +|......+...+......    +...+...  ..|++++++.+.   ++++++++++++|++|.+. +++.+++|+++|
T Consensus       113 ~y~~~~~~~~~~g~~v~~v----~~~~~~~~--~~d~~~l~~~~~---~~~kli~i~~p~NPtG~~~-~~~~l~~i~~~a  182 (373)
T PRK07324        113 TYQQLYDIPESLGAEVDYW----QLKEENGW--LPDLDELRRLVR---PNTKLICINNANNPTGALM-DRAYLEEIVEIA  182 (373)
T ss_pred             CchhHHHHHHHcCCEEEEE----ecccccCC--CCCHHHHHHhCC---CCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHH
Confidence            9977654444333221111    11000000  027888887775   5788999999999999877 899999999999


Q ss_pred             HhcCCEEEEeccccCCcccccCccc-ccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259          159 SKYNILMIADEIQSGLARSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~-~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (374)
                      ++||++||+||+|.++.+.+..... +..+....+.||||.++ +|+ |+||+++++++++.+.......+++.+.+++.
T Consensus       183 ~~~~~~ii~De~y~~l~~~~~~~s~~~~~~~~I~~~s~SK~~~~~G~-RiG~i~~~~~li~~~~~~~~~~~~~~~~~~q~  261 (373)
T PRK07324        183 RSVDAYVLSDEVYRPLDEDGSTPSIADLYEKGISTNSMSKTYSLPGI-RVGWIAANEEVIDILRKYRDYTMICAGVFDDM  261 (373)
T ss_pred             HHCCCEEEEEccccccccCCCCCChhhccCCEEEEecchhhcCCccc-eeEEEecCHHHHHHHHHHhCcEEecCChHHHH
Confidence            9999999999999987554322111 11111122348999999 799 99999999999888876655556777888888


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHHHH-HCCeEec
Q 017259          237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMK-ERGILAK  314 (374)
Q Consensus       237 aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~  314 (374)
                      ++..+++.  .+.+.++.++..+..++.+.+.....+ ......+. |.+.|+.++...   +..+++++|+ ++||.+.
T Consensus       262 ~a~~~l~~--~~~~l~~~~~~~~~~~~~l~~~l~~~~-~~~~~~p~gg~~~~i~~~~~~---~~~~~~~~ll~~~gv~v~  335 (373)
T PRK07324        262 LASLALEH--RDAILERNRKIVRTNLAILDEWVAKEP-RVSYVKPKAVSTSFVKLDVDM---PSEDFCLKLLKETGVLLV  335 (373)
T ss_pred             HHHHHHcC--HHHHHHHHHHHHHHHHHHHHHHHhcCC-CceEECCCceEEEEEEeCCCC---CHHHHHHHHHHhcCEEEE
Confidence            88777752  223444444444444444444433332 22223333 455566665433   5778999976 6699999


Q ss_pred             cCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+.    ++++||++  ..+++.+++++++|+++++
T Consensus       336 pg~~F~~~~~iRis~--~~~~~~l~~~l~rl~~~l~  369 (373)
T PRK07324        336 PGNRFDLEGHVRIGY--CCDTETLKKGLKKLSEFLR  369 (373)
T ss_pred             CccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence            974    58999994  4578999999999999987

>PRK13393 5-aminolevulinate synthase; Provisional

Probab=99.97  E-value=2.6e-29  Score=237.99  Aligned_cols=309  Identities=19%  Similarity=0.222  Sum_probs=225.5

Q ss_pred             hHHHHHHHhccccC---c--CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS---R--AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~---~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++.....   .  .+..+.+.+++++|++++|.+.+++++||++|++.+++.+..   ..+|     + +|+.
T Consensus        66 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~SG~~An~~ai~~l~~---~~~g-----~-~I~~  136 (406)
T PRK13393         66 AAMHEALDTCGAGAGGTRNISGTNHYHVLLEAELADLHGKEAALLFTSGYVSNWAALSTLGS---RLPG-----C-VILS  136 (406)
T ss_pred             HHHHHHHHHcCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHhhc---CCCC-----C-EEEE
Confidence            67788888754421   1  134567899999999999989999999999999999997631   1133     4 6667


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +..||+.+.......+            ..+..++++|++++++.++... +++++++++++++++|.+.+    +++|.
T Consensus       137 ~~~~H~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~~G~~~~----l~~i~  200 (406)
T PRK13393        137 DELNHASMIEGIRHSR------------AEKRIFRHNDPADLERKLSDLDPHRPKLVAFESVYSMDGDIAP----IAEIC  200 (406)
T ss_pred             ccchhHHHHHHHHHcC------------CeEEEeCCCCHHHHHHHHHhccCCCCEEEEEcCCCCCCCchhC----HHHHH
Confidence            7778987665544332            2234556678999998887542 46889999999999999998    99999


Q ss_pred             HHHHhcCCEEEEecccc-CC-cccccCcccccCCCC--CcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC--CC
Q 017259          156 DLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEVR--PDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--ST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~~--~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~  227 (374)
                      ++|++||+++|+||+|+ |+ ++.|..+. ...++.  ++++  +|||+++.   ..||+++++++.+.+......  .+
T Consensus       201 ~l~~~~~~~livDea~~~g~~g~~G~g~~-~~~~~~~~~~i~~~tlsKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t  276 (406)
T PRK13393        201 DVAEKHGAMTYLDEVHAVGLYGPRGGGIA-EREGLADRLTIIEGTLAKAFGV---MGGYITGSAALCDFIRSFASGFIFT  276 (406)
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCchh-hhcCCCCCCeEEEEeCchhhcc---cCceeeCCHHHHHHHHHhCcCceec
Confidence            99999999999999998 64 66665432 333433  4665  99999982   225577888888777654333  34


Q ss_pred             CCCCHHHHHHHHHHHHHHhhhc-HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDEK-LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.++.+++++.++++.+.+.. ...+++++.+++++.|+++.  ++ .+   ++.+.++.+.+.+..   ...++.+.|
T Consensus       277 ~~~~p~~~aa~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~---~~~~~i~~v~~~~~~---~~~~l~~~L  347 (406)
T PRK13393        277 TSLPPAVAAGALASVRHLKASSAERERHQDRVARLRARLDKAG--IP-HL---PNPSHIVPVMVGDPV---LCKQISDEL  347 (406)
T ss_pred             CccCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC--CC-cC---CCCCCeEEEEeCCHH---HHHHHHHHH
Confidence            5678888899999998875432 24556677888888887642  11 21   345666666554321   467899999


Q ss_pred             HH-CCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KE-RGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~-~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++ +||++++.       +.+.+||++++.++++|+++++++|+++++ ++
T Consensus       348 ~~~~Gi~v~~~~~p~~p~g~~~iRis~~~~~t~edid~l~~~l~~~~~-~~  397 (406)
T PRK13393        348 LDRYGIYVQPINYPTVPRGTERLRITPSPLHTDADIEHLVQALSEIWA-RL  397 (406)
T ss_pred             HHhCCEEEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-hc
Confidence            88 59999752       247899999999999999999999999988 65

>PRK07682 hypothetical protein; Validated

Probab=99.97  E-value=3.8e-29  Score=234.98  Aligned_cols=298  Identities=12%  Similarity=0.120  Sum_probs=205.0

Q ss_pred             CCCCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++.+.+|    .+ ++++|+|+++|+..+++.+     .++|     |+|++.+|+|+.+...+...+.
T Consensus        58 g~~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~  127 (378)
T PRK07682         58 GLLELRQEIAKYLKKRFAVSYDPNDEIIVTVGASQALDVAMRAI-----INPG-----DEVLIVEPSFVSYAPLVTLAGG  127 (378)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh-----CCCC-----CEEEEeCCCchhhHHHHHHcCC
Confidence            334455556666655433    33 7999999999999998887     5677     9999999999876554444332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +...+...  -.|++++++++.   ++++++++++++||+|.+. +++.+++|.++|++|++++|+||+|.
T Consensus       128 ~~~~~----~~~~~~~~--~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y~  197 (378)
T PRK07682        128 VPVPV----ATTLENEF--KVQPAQIEAAIT---AKTKAILLCSPNNPTGAVL-NKSELEEIAVIVEKHDLIVLSDEIYA  197 (378)
T ss_pred             EEEEe----ecCCccCC--CCCHHHHHhhcC---cccEEEEEECCCCCcCcCc-CHHHHHHHHHHHHHcCcEEEEehhhh
Confidence            21111    10000000  017889988876   4688888888889999866 89999999999999999999999999


Q ss_pred             CCcccccCccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++.+.+..... ...+....   +.||||.++ +|+ |+||+++++++++.+........++.+.+++.++.++++....
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R~G~~~~~~~~i~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~  276 (378)
T PRK07682        198 ELTYDEAYTSFASIKGMRERTILISGFSKGFAMTGW-RLGFIAAPVYFSEAMLKIHQYSMMCAPTMAQFAALEALRAGND  276 (378)
T ss_pred             hcccCCCCCChhhcccccCCEEEEecCcccccChhh-hhhhhhcCHHHHHHHHHHHHhhccCCCHHHHHHHHHHHhCChH
Confidence            87654432221 11122222   348999998 799 9999999999988887543344556788888888888764211


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccCC------
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPTH------  317 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~~------  317 (374)
                        ++..++++++++.+.+.|++.     ++....+..+.++|..++. ..   +..++++.|+ ++||.+.|+.      
T Consensus       277 ~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~~p~g~~~~~~~~~~~~~---~~~~~~~~ll~~~gv~v~pg~~f~~~~  348 (378)
T PRK07682        277 DVIRMRDSYRKRRNFFVTSFNEI-----GLTCHVPGGAFYAFPSISSTGL---SSEEFAEQLLLEEKVAVVPGSVFGESG  348 (378)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-----CCccCCCCeeEEEEEeccCCCC---CHHHHHHHHHHhCCEEEcCchhhCcCC
Confidence              133455566666666666654     2211122235566665642 22   5778999886 6799998852      


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++||+++  .+++++++++++|+++++
T Consensus       349 ~~~iRis~~--~~~~~l~~~l~~l~~~l~  375 (378)
T PRK07682        349 EGFIRCSYA--TSLEQLQEAMKRMKRFVE  375 (378)
T ss_pred             CCeEEEEeC--CCHHHHHHHHHHHHHHHh
Confidence            589999955  578999999999999987

>TIGR01821 5aminolev_synth 5-aminolevulinic acid synthase

Probab=99.97  E-value=5.7e-29  Score=235.56  Aligned_cols=309  Identities=20%  Similarity=0.257  Sum_probs=222.4

Q ss_pred             hHHHHHHHhccccC--c---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS--R---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~--~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++.....  +   .+..+.+.+|+++|++++|.+..++++||++|++.+++++...   .+      +.+++.
T Consensus        66 ~a~~~~~~~~~~~~~~s~~~~g~~~~~~~Le~~la~~~g~~~~l~~~sG~~an~~ai~~l~~~---~~------~~~v~~  136 (402)
T TIGR01821        66 QAMHETLDKYGAGAGGTRNISGTNIPHVELEAELADLHGKESALVFTSGYVANDATLATLAKI---IP------GCVIFS  136 (402)
T ss_pred             HHHHHHHHHcCCCCcchhhhhCCcHHHHHHHHHHHHHhCCCeEEEECchHHHHHHHHHHhhCC---CC------CCEEEE
Confidence            67778887754322  1   1457788999999999999888999999999999999988521   12      345555


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +..+|+.........+.            ....++++|++++++.++... ++++++++++++|++|.+.+    +++|.
T Consensus       137 ~~~~h~s~~~~~~~~g~------------~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~e~~~~~~G~~~~----l~~i~  200 (402)
T TIGR01821       137 DELNHASMIEGIRHSGA------------EKFIFRHNDVAHLEKLLQSVDPNRPKIIAFESVYSMDGDIAP----IEEIC  200 (402)
T ss_pred             cchHhHHHHHHHHHcCC------------eEEEECCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHH
Confidence            66678766544433321            123345668999999887643 36899999999999999998    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--CCC
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~  227 (374)
                      ++|++||+++|+||+|+ | ++..|... ....++  .+|++  +|||++++   ..||+++++++++.+.....  ..+
T Consensus       201 ~l~~~~~~~livDea~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~---~GG~i~~~~~~~~~l~~~~~~~~~t  276 (402)
T TIGR01821       201 DLADKYGALTYLDEVHAVGLYGPRGGGI-AERDGLMHRIDIIEGTLAKAFGV---VGGYIAASRKLIDAIRSYAPGFIFT  276 (402)
T ss_pred             HHHHHcCCEEEEeCcccccccCCCCCcc-chhccCCCCCeEEEEechhhhcc---CCceeecCHHHHHHHHHhCcCceec
Confidence            99999999999999998 4 34444332 233333  35666  99999982   22567888888887764322  234


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.++.+++++.++++.+.+. ...++.+++.+++++.|++++  ++ ..   .+.+.++.+.++...   ...++.+.|
T Consensus       277 ~~~~~~~~aaa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~---~~~~~i~~i~~~~~~---~a~~~~~~L  347 (402)
T TIGR01821       277 TSLPPAIAAGATASIRHLKESQDLRRAHQENVKRLKNLLEALG--IP-VI---PNPSHIVPVIIGDAA---LCKKVSDLL  347 (402)
T ss_pred             CcCCHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHcC--CC-cC---CCCCCEEEEEeCCHH---HHHHHHHHH
Confidence            567888999999999987654 345566778888888887653  21 11   224556666554321   467899998


Q ss_pred             HH-CCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KE-RGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~-~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++ +||++++.       +.+++||+++..++++|+++++++|+++++ ++
T Consensus       348 ~~~~Gi~v~~~~~p~~~~g~~~lRis~~~~~t~edi~~~~~~l~~~~~-~~  397 (402)
T TIGR01821       348 LNKHGIYVQPINYPTVPRGTERLRITPTPAHTDKMIDDLVEALLLVWD-RL  397 (402)
T ss_pred             HhcCCEEEEeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            75 59998762       346899999999999999999999999988 54

This model represents 5-aminolevulinic acid synthase, an enzyme for one of two routes to the heme precursor 5-aminolevulinate. The protein is a pyridoxal phosphate-dependent enzyme related to 2-amino-3-ketobutyrate CoA tranferase and 8-amino-7-oxononanoate synthase. This enzyme appears restricted to the alpha Proteobacteria and mitochondrial derivatives.

>PRK09064 5-aminolevulinate synthase; Validated

Probab=99.97  E-value=1.1e-28  Score=234.06  Aligned_cols=309  Identities=19%  Similarity=0.235  Sum_probs=222.3

Q ss_pred             hHHHHHHHhccccC--c---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS--R---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~--~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++.....  +   .++.+.+.+|+++|++++|.+..++++||++|++.+++++...   .+      +.+++.
T Consensus        67 ~a~~~~~~~~~~~~~~s~~~~g~~~~~~~l~~~la~~~g~~~~~~~~sG~~an~~ai~~l~~~---~~------~~~i~~  137 (407)
T PRK09064         67 EAMIEALDRCGAGAGGTRNISGTNHYHVELERELADLHGKEAALVFTSGYVSNDATLSTLAKL---IP------DCVIFS  137 (407)
T ss_pred             HHHHHHHHHcCCCCCCcCcCccCHHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHHhCC---CC------CCEEEE
Confidence            57777777654321  1   1357789999999999998888899999999999999988531   12      344444


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +..+|+.........+            .....++++|++++++.++... +++++++++++++++|.+.+    +++|.
T Consensus       138 ~~~~h~s~~~~~~~~~------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~v~s~~G~~~~----l~~i~  201 (407)
T PRK09064        138 DELNHASMIEGIRRSR------------CEKHIFRHNDVAHLEELLAAADPDRPKLIAFESVYSMDGDIAP----IAEIC  201 (407)
T ss_pred             eCcchHHHHHHHHHcC------------CcEEEECCCCHHHHHHHHHhccCCCCeEEEEeCCCCCCccccC----HHHHH
Confidence            5444665433332221            1234456678999999887543 46899999999999999998    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--CCC
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~  227 (374)
                      ++|++||++||+||+|+ | +++.|..+ ....+.  .+|++  ||||+++.   ..||+++++++++.+.....  ..+
T Consensus       202 ~l~~~~~~~livDEa~~~G~~g~~g~g~-~~~~~~~~~~div~~t~sKa~g~---~GG~~~~~~~~~~~l~~~~~~~~~t  277 (407)
T PRK09064        202 DLADKYNALTYLDEVHAVGMYGPRGGGI-AERDGLMDRIDIIEGTLAKAFGV---MGGYIAGSAALVDAVRSYAPGFIFT  277 (407)
T ss_pred             HHHHHcCCEEEEECCCcccccCCCCCCh-HHhcCCCCCCeEEEEecchhhhc---cCceEecCHHHHHHHHHhCcccccc
Confidence            99999999999999998 5 56666543 233333  45766  99999972   23568888888877654322  224


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.++.+++++.++++.+... ...++++++++++++.|++++..   ++   .+.+.++.+.+++..   ...++.++|
T Consensus       278 ~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~---~~~~~iv~i~~~~~~---~~~~l~~~L  348 (407)
T PRK09064        278 TSLPPAIAAAALASIRHLKESNEERERHQERAAKLKAALDAAGIP---VM---PNESHIVPVMVGDPE---KCKKASDML  348 (407)
T ss_pred             CcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC---CC---CCCCCEEEEEeCCHH---HHHHHHHHH
Confidence            466788888899999887654 34577888888888888775311   21   123556666554322   567899998


Q ss_pred             HH-CCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KE-RGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~-~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++ +||++++.       +.+.+||+++..++++|+++++++|+++++ ++
T Consensus       349 ~~~~gi~v~~~~~p~~~~~~~~lRis~~~~~t~edi~~l~~~l~~~~~-~~  398 (407)
T PRK09064        349 LEEHGIYVQPINYPTVPRGTERLRITPTPFHTDEMIDHLVEALVEVWA-RL  398 (407)
T ss_pred             HHhCCEEEeeECCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            75 59999753       236899999999999999999999999988 65

>PRK06108 aspartate aminotransferase; Provisional

Probab=99.97  E-value=2e-28  Score=230.53  Aligned_cols=299  Identities=15%  Similarity=0.168  Sum_probs=204.0

Q ss_pred             CCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+.+|    .+++++|+|+++++..++..+     .++|     |.|++.+|+|..+...+...+..
T Consensus        62 G~~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~  131 (382)
T PRK06108         62 GIPELREALARYVSRLHGVATPPERIAVTSSGVQALMLAAQAL-----VGPG-----DEVVAVTPLWPNLVAAPKILGAR  131 (382)
T ss_pred             CCHHHHHHHHHHHHHHhCCCcCcceEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCccchHHHHHHCCCE
Confidence            444556667777665544    578999999999999999887     4567     99999999997665444333221


Q ss_pred             ccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ....    +...+  ...+ .|++++++.++   ++++++++++++|++|.+. +.+.+++|.++|+++|++||+||+|+
T Consensus       132 ~~~v----~~~~~--~~~~~~d~~~l~~~~~---~~~~~i~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~  201 (382)
T PRK06108        132 VVCV----PLDFG--GGGWTLDLDRLLAAIT---PRTRALFINSPNNPTGWTA-SRDDLRAILAHCRRHGLWIVADEVYE  201 (382)
T ss_pred             EEEe----eCCCC--CCCccCCHHHHHHhcC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEehhhh
Confidence            1110    11000  0001 26888888775   4688888888899999877 89999999999999999999999999


Q ss_pred             CCccc-ccCc-c-cccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          173 GLARS-GRML-A-SDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       173 ~~~~~-g~~~-~-~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ++.+. +... . .........   +.||||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++..+++..
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~a~~~~l~~~  280 (382)
T PRK06108        202 RLYYAPGGRAPSFLDIAEPDDRIIFVNSFSKNWAMTGW-RLGWLVAPPALGQVLEKLIEYNTSCVAQFVQRAAVAALDEG  280 (382)
T ss_pred             hhccCCCCCCCCHhhcCCCcCCEEEEeechhhccCccc-ceeeeeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCC
Confidence            87543 2111 1 111111222   338999997 699 99999999988888765433345567888888888888642


Q ss_pred             hh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC-----
Q 017259          246 RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-----  317 (374)
Q Consensus       246 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----  317 (374)
                      .+  ++..++++++.+.+.+.|+..    +++....+..+.++|+.++...   +..++++.|+ ++||.+.++.     
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~p~~g~~~~~~l~~~~---~~~~~~~~ll~~~gV~v~pg~~f~~~  353 (382)
T PRK06108        281 EDFVAELVARLRRSRDHLVDALRAL----PGVEVAKPDGAMYAFFRIPGVT---DSLALAKRLVDEAGLGLAPGTAFGPG  353 (382)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhC----CCCcccCCCeeEEEEEeCCCCC---CHHHHHHHHHHhCCEEEeCchhhCCC
Confidence            11  233455555555555555443    2222112234667788776543   5678999886 5799998752     


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .+++|++++.  +++++++++++|+++++
T Consensus       354 ~~~~~Ris~~~--~~~~l~~~l~~l~~~l~  381 (382)
T PRK06108        354 GEGFLRWCFAR--DPARLDEAVERLRRFLA  381 (382)
T ss_pred             CCCEEEEEecC--CHHHHHHHHHHHHHHHh
Confidence             5799999775  89999999999998875

>PLN03227 serine palmitoyltransferase-like protein; Provisional

Probab=99.97  E-value=2.6e-28  Score=228.99  Aligned_cols=313  Identities=17%  Similarity=0.222  Sum_probs=225.2

Q ss_pred             hHHHHHHHhcc-cc-Cc---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLT-LS-SR---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~-~~-~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++++.. .+ ++   ++....+.+|+++++++++.+..+++++|+.++..++..+     .++|     |.|++.
T Consensus        19 ~~~~~a~~~~g~~~~~sr~~yg~~~~~~~LE~~lA~~~g~e~al~~~sG~~a~~~~i~~l-----~~~G-----D~Vl~~   88 (392)
T PLN03227         19 QTALESLSHYGCGSCGPRGFYGTIDAHLELEQCMAEFLGTESAILYSDGASTTSSTVAAF-----AKRG-----DLLVVD   88 (392)
T ss_pred             HHHHHHHHHhCCCCcccccccCChHHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHh-----CCCC-----CEEEEe
Confidence            56666766521 11 11   1335578899999999999999999999999998888877     6778     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc-----------CCcEEEEEEccccCCCCccc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES-----------GDQIAGFLFEPIQGEAGVII  145 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-----------~~~~~~vi~~~~~~~~g~~~  145 (374)
                      ++.|.+.... ..+..            ..+..++++|++++++.++..           .++++++++|++++++|.+.
T Consensus        89 ~~~h~s~~~~-~~l~~------------~~~~~~~~~d~~~l~~~~~~i~~~~~a~~~~~~~~t~~vi~E~v~~~~G~i~  155 (392)
T PLN03227         89 RGVNEALLVG-VSLSR------------ANVRWFRHNDMKDLRRVLEQVRAQDVALKRKPTDQRRFLVVEGLYKNTGTLA  155 (392)
T ss_pred             ccccHHHHHH-HHHcC------------CeEEEeCCCCHHHHHHHHHHhhhhccccccccCCCcEEEEEcCCcCCCCccc
Confidence            9987543222 12211            234456667777777655432           13689999999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCEEEEecccc--CCcccccCcccccCCCCC----cEEEec--ccccCCccchhhheeCHHHHh
Q 017259          146 PPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEEVRP----DMVILG--KALGGGVIPVSAVLADKEVML  217 (374)
Q Consensus       146 ~~~~~l~~l~~l~~~~~i~li~Dea~~--~~~~~g~~~~~~~~~~~~----d~~s~s--K~~~~G~~~~G~~~~~~~~~~  217 (374)
                      +    +++|.++|++||+++|+||+|+  .+++.|. +..+++++.|    |++++|  |+++  . .+|++++++++.+
T Consensus       156 ~----l~~i~~l~~~~g~~livDe~~~~g~~g~~G~-g~~~~~g~~p~~~~Div~~slsk~~g--~-~gg~v~~~~~~~~  227 (392)
T PLN03227        156 P----LKELVALKEEFHYRLILDESFSFGTLGKSGR-GSLEHAGLKPMVHAEIVTFSLENAFG--S-VGGMTVGSEEVVD  227 (392)
T ss_pred             C----HHHHHHHHHHcCCEEEEECcccccccCCCCC-cHHHHcCCCCCCCceEEEeechhhhh--c-cCcEEecCHHHHH
Confidence            8    9999999999999999999998  2444455 4567777777    877555  5543  4 4566778888887


Q ss_pred             hcCCCCCCCCCCCC--HHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE--------EeeeE
Q 017259          218 CIQPGEHGSTFGGN--PLASAVAIASLDV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--------RGLFN  286 (374)
Q Consensus       218 ~~~~~~~~~~~~~~--~~~~~aa~~al~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--------~g~~~  286 (374)
                      .++...++.+|+.+  ++.++++.++++. ...+++.++++++.+++++.|++.  .+| .+.+.++        .++++
T Consensus       228 ~~~~~~~~~~~~~~~~p~~~~aa~~al~~~~~~~~~~~~l~~~~~~l~~~L~~~--~~~-~~~~~rg~~~~~~~~~~~i~  304 (392)
T PLN03227        228 HQRLSGSGYCFSASAPPFLAKADATATAGELAGPQLLNRLHDSIANLYSTLTNS--SHP-YALKLRNRLVITSDPISPII  304 (392)
T ss_pred             HHHHhCcCccccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhc--CCc-cccccccccccCCCCCCCEE
Confidence            77655566677664  7677777777755 344578999999999999999863  222 3333332        35677


Q ss_pred             EEEeccCCCc------hhHHHHHHHHHHCCeEeccC-----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          287 AVEFDKTALP------VSAYDICLKMKERGILAKPT-----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       287 ~~~~~~~~~~------~~~~~~~~~l~~~Gi~v~~~-----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+.+....      ....++++.|+++|+.+.+.           .+..+|++++..+|++|+++++++|+++++ .+
T Consensus       305 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~Gi~~~~~~~~~~~~~~~~P~~~iR~~~~~~~t~eei~~~~~~l~~~~~-~~  383 (392)
T PLN03227        305 YLRLSDQEATRRTDETLILDQIAHHSLSEGVAVVSTGGHVKKFLQLVPPPCLRVVANASHTREDIDKLLTVLGEAVE-AI  383 (392)
T ss_pred             EEEeCCHHHhhhhhhhhHHHHHHHHHHHCCCEEEecccccCCcCCCCCCceEEEEecCCCCHHHHHHHHHHHHHHHH-HH
Confidence            7777542100      01258999999999988532           256789999999999999999999999998 65

>PRK15481 transcriptional regulatory protein PtsJ; Provisional

Probab=99.97  E-value=2.8e-28  Score=232.69  Aligned_cols=286  Identities=15%  Similarity=0.135  Sum_probs=200.7

Q ss_pred             HHHHHHHhccc----C-CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           24 PVFAERLTSMF----G-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        24 ~~l~~~l~~~~----~-~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .+|.+.+++++    + .+++++|+|+++++..++.++     .++|     |.|++.+|+|.++...+...+...... 
T Consensus       124 ~~lr~~ia~~~~~~~~~~~~Iiit~G~~~al~~~~~~l-----~~pg-----d~Vlv~~P~y~~~~~~~~~~g~~~~~v-  192 (431)
T PRK15481        124 PELHAWAARWLRDDCPVAFEIDLTSGAIDAIERLLCAH-----LLPG-----DSVAVEDPCFLSSINMLRYAGFSASPV-  192 (431)
T ss_pred             HHHHHHHHHHHhhccCCcCeEEEecCcHHHHHHHHHHh-----CCCC-----CEEEEeCCCcHHHHHHHHHcCCeEEee-
Confidence            44555555443    3 358999999999999999988     5677     999999999988766665544321111 


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEc-cccCCCCcccCChhHHHHHHHHHHhc-CCEEEEeccccCCcc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE-PIQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEIQSGLAR  176 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~-~~~~~~g~~~~~~~~l~~l~~l~~~~-~i~li~Dea~~~~~~  176 (374)
                         +...+  .   -|+++++++++   +++++++++ +++||+|.+. +.+.+++|.++|++| +++||+||+|.++..
T Consensus       193 ---~~~~~--g---~~~~~l~~~~~---~~~k~i~~~p~p~NPTG~~~-s~~~~~~l~~la~~~~~~~ii~De~Y~~~~~  260 (431)
T PRK15481        193 ---SVDAE--G---MQPEKLERALA---QGARAVILTPRAHNPTGCSL-SARRAAALRNLLARYPQVLVIIDDHFALLSS  260 (431)
T ss_pred             ---ccCCC--C---CCHHHHHHHHh---cCCCEEEECCCCCCCCCccC-CHHHHHHHHHHHHhcCCceEEecCchhhhcc
Confidence               11110  0   26889998886   367788887 5788888877 899999999999999 999999999998743


Q ss_pred             cccCcccccCCCCCcE---EEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh----c
Q 017259          177 SGRMLASDWEEVRPDM---VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE----K  249 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~---~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~----~  249 (374)
                      .+......  ...+.+   -||||.+++|+ |+||+++++++.+.+........++.+.+++.++.++++.-..+    +
T Consensus       261 ~~~~~~~~--~~~~~vi~~~SfSK~~~~Gl-RiG~~i~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~l~~  337 (431)
T PRK15481        261 SPYHSVIP--QTTQRWALIRSVSKALGPDL-RLAFVASDSATSARLRLRLNSGTQWVSHLLQDLVYACLTDPEYQARLAQ  337 (431)
T ss_pred             CCCCCCCc--CCCCCEEEEeeeccccCCCc-eeEEEeCCHHHHHHHHHHHhccccCCCHHHHHHHHHHHhCccHHHHHHH
Confidence            32211111  112333   39999999999 99999999988888764333344567889999888888642111    2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------CCEEE
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTIVR  322 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~lR  322 (374)
                      ..+.++++.+.+.+.|++.     ++....+..|.|+|+.++.     +..++++.|.++||.+.|+.       .+++|
T Consensus       338 ~~~~~~~~r~~~~~~L~~~-----~~~~~~p~gg~f~~~~l~~-----~~~~~~~~l~~~gV~v~pg~~f~~~~~~~~iR  407 (431)
T PRK15481        338 ARLFYAQRRQKLARALQQY-----GIAIPSPGDGLNLWLPLDT-----DSQATALTLAKSGWLVREGEAFGVSAPSHGLR  407 (431)
T ss_pred             HHHHHHHHHHHHHHHHHHc-----CCccccCCCeEEEEEECCC-----CHHHHHHHHHHCCcEEecCCccccCCCCCeEE
Confidence            2344444444444444433     2222234568888988864     35789999999999998852       35899


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++. .+++++++++++|+++++
T Consensus       408 is~~~-~~~~~i~~~~~~l~~~~~  430 (431)
T PRK15481        408 ITLST-LNDAEINRLAADLHQALN  430 (431)
T ss_pred             EEcCC-CChHHHHHHHHHHHHHhc
Confidence            99664 468999999999999875

>COG1167 ARO8 Transcriptional regulators containing a DNA-binding HTH domain and an aminotransferase domain (MocR family) and their eukaryotic orthologs [Transcription / Amino acid transport and metabolism]

Probab=99.97  E-value=2.4e-28  Score=232.84  Aligned_cols=298  Identities=19%  Similarity=0.205  Sum_probs=220.6

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++....    ..++|++|+|+.+|++++++++     ..+|     |.|++.+|+|++........+  
T Consensus       133 G~~~LR~~ia~~l~~~~g~~~~~~~IiiT~G~q~al~l~~~~l-----~~pG-----d~v~vE~PtY~~~~~~~~~~g--  200 (459)
T COG1167         133 GLPELREAIAAYLLARRGISCEPEQIVITSGAQQALDLLLRLL-----LDPG-----DTVLVEDPTYPGALQALEALG--  200 (459)
T ss_pred             CcHHHHHHHHHHHHHhcCCccCcCeEEEeCCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCcHHHHHHHHHcC--
Confidence            44555666666666322    5568999999999999999988     5678     999999999998776665544  


Q ss_pred             ccccccCCCCCCCceeccCC----CHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           94 NEAIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                                 .++..+|.+    |+++|++.++.+  ++++++++| .+||+|..+ |.+..++|.++|++||++||+|
T Consensus       201 -----------~~~~~vp~d~~G~~~e~le~~~~~~--~~k~~y~~P~~qNPtG~tm-s~~rR~~Ll~lA~~~~~~IIED  266 (459)
T COG1167         201 -----------ARVIPVPVDEDGIDPEALEEALAQW--KPKAVYVTPTFQNPTGVTM-SLERRKALLALAEKYDVLIIED  266 (459)
T ss_pred             -----------CcEEecCCCCCCCCHHHHHHHHhhc--CCcEEEECCCCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEee
Confidence                       334444443    799999999865  788999998 577778777 8999999999999999999999


Q ss_pred             ccccCCcccccCc-ccccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRML-ASDWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       169 ea~~~~~~~g~~~-~~~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |.|+.+.+.+.+. +...+   +....+.||||.+++|+ |+||+++++++++.+.......+.+.+.+.+.+...-+..
T Consensus       267 D~y~el~~~~~p~~~l~~ld~~~rViy~gSFSK~l~Pgl-RlG~vv~p~~~~~~~~~~k~~~~~~~s~~~Q~~la~~l~~  345 (459)
T COG1167         267 DYYGELRYDGPPPPPLKALDAPGRVIYLGSFSKTLAPGL-RLGYVVAPPELIEKLLRLKQAADLGPSSLSQAALAAFLLS  345 (459)
T ss_pred             CcchhhhcCCCCCCChHhhCCCCCEEEEeeehhhccccc-ceeeeeCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHc
Confidence            9999886665432 12222   22233459999999999 9999999999999998877788888898988877665552


Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-C-----
Q 017259          245 IRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-T-----  316 (374)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~-----  316 (374)
                      ..-+.+.++++...+..++.+.+....+ |+.... .+..|.++|+.++...   +..++.+.++++|+.+.+ +     
T Consensus       346 G~~~~hl~~lR~~y~~rr~~l~~~L~~~~~~~~~~~~p~gG~flwl~l~~~~---~~~~l~~~a~~~gv~i~~~g~~f~~  422 (459)
T COG1167         346 GHYDRHLRRLRREYARRRDALLEALAEYLPELATWTRPEGGLFLWLELPEGI---DARELLAAALEKGVVVTPLGSAFSA  422 (459)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeeecCCceEEEEEEcCCCC---CHHHHHHHHHHCCCEEEcCCccccC
Confidence            1112333333333333333333333332 223333 3445899999998876   789999999999999988 3     


Q ss_pred             ---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ---HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         ..+++|++++.. +++++++++.+|.+++.
T Consensus       423 ~~~~~~~~Rl~~s~~-~~e~i~~gi~~l~~~~~  454 (459)
T COG1167         423 DGDPRNGLRLSFSSP-SEEEIEEGIKRLAALLR  454 (459)
T ss_pred             CCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH
Confidence               146999997754 58899999999999887

>PRK01533 histidinol-phosphate aminotransferase; Validated

Probab=99.97  E-value=1.5e-28  Score=229.06  Aligned_cols=288  Identities=14%  Similarity=0.150  Sum_probs=208.1

Q ss_pred             CCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           17 AFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .|+.....+|.+.++++++  .+++++|+|+++++..++.++     ..+|     |+|++..|+|.++...+...+...
T Consensus        60 ~Yp~~g~~~Lr~aia~~~~~~~~~I~vt~Gs~e~i~~~~~~l-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~~v  129 (366)
T PRK01533         60 LYPDGGATTLRQTIANKLHVKMEQVLCGSGLDEVIQIISRAV-----LKAG-----DNIVTAGATFPQYRHHAIIEGCEV  129 (366)
T ss_pred             cCCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCcHHHHHHHHHHcCCEE
Confidence            3556667788888888774  568999999999999999888     5667     999999999977766554333211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +.. +.    ..|+++++++++   ++++++++++++||+|.+. +.+.+++|+++|++++ ++|+||+|.+|
T Consensus       130 ~~v----~~~-~~----~~d~~~l~~~~~---~~~~~v~i~~P~NPTG~~~-~~~~l~~l~~~~~~~~-~~iiDe~y~~~  195 (366)
T PRK01533        130 KEV----ALN-NG----VYDLDEISSVVD---NDTKIVWICNPNNPTGTYV-NDRKLTQFIEGISENT-LIVIDEAYYEY  195 (366)
T ss_pred             EEe----ecC-CC----CcCHHHHHHHhC---cCCcEEEEeCCCCCCCCCc-CHHHHHHHHHhCCCCC-EEEEEccHHHh
Confidence            110    110 00    127889988876   4678888888899999888 7899999999998877 56779999876


Q ss_pred             cccccC-cccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          175 ARSGRM-LASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       175 ~~~g~~-~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      ...+.. .........+.+   -||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++.++++   +.+
T Consensus       196 ~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiG~~i~~~~~~~~l~~~~--~~~~~~~~~q~aa~~~l~---~~~  269 (366)
T PRK01533        196 VTAKDFPETLPLLEKHKNILVLRTFSKAYGLASF-RVGYAVGHEELIEKLNVVR--LPFNVSSLAQKAATIAFG---DDE  269 (366)
T ss_pred             hccccCcchhHHhccCCCEEEEeCchHHhcChHH-HHhHHhCCHHHHHHHHHhc--CCCCcCHHHHHHHHHHhC---CHH
Confidence            433211 111111222333   38999999 899 9999999999988887532  457889999999988885   334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCC
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI  329 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~  329 (374)
                      +.++.++.....++++......+ ++ ...++.++|+|+.++      +..++.+.|.++||.|++. ++++||+   ..
T Consensus       270 ~~~~~~~~~~~~r~~~~~~l~~~-g~-~~~~~~~nf~~~~~~------~~~~~~~~l~~~GI~Vr~~-~~~iRis---~~  337 (366)
T PRK01533        270 FIEEIVRVNTEGLRQYESFCKEN-EI-PFYQSQTNFIFLPVE------NGGEIYEACAHAGFIIRPF-PNGVRIT---VG  337 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-CC-ccCCCcCcEEEEeCC------CHHHHHHHHHHCCcEEccC-CCceEEe---CC
Confidence            55555554444444454444332 22 223457889998774      3568999999999999997 6899999   66


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 017259          330 SSNELQEGSKALHDVLE  346 (374)
Q Consensus       330 ~~e~i~~~~~~l~~~~~  346 (374)
                      +.+++++++++|+++++
T Consensus       338 ~~~~~~~l~~al~~~~~  354 (366)
T PRK01533        338 TREQNEGVISVLQQHFE  354 (366)
T ss_pred             CHHHHHHHHHHHHHHHH
Confidence            88999999999999987

>PLN00175 aminotransferase family protein; Provisional

Probab=99.97  E-value=3.7e-28  Score=229.96  Aligned_cols=297  Identities=16%  Similarity=0.197  Sum_probs=204.3

Q ss_pred             CCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           20 NDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++++.+++++.+..+    .+ ++++|+|+++|+..++..+     ..+|     |+|++.+|+|..+...+...+...
T Consensus        94 ~~Lr~aia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~~  163 (413)
T PLN00175         94 PELNSAIAERFKKDTGLVVDPEKEVTVTSGCTEAIAATILGL-----INPG-----DEVILFAPFYDSYEATLSMAGAKI  163 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCCEEEeCCHHHHHHHHHHHh-----CCCC-----CEEEEeCCCchhHHHHHHHcCCEE
Confidence            3444555555554433    34 6999999999999988877     5677     999999999977655544433322


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+.  . ..|++++++++.   ++++++++++++||+|.+. +++.+++|+++|++||++||+||+|.++
T Consensus       164 ~~v----~~~~~~--~-~~~~~~l~~~~~---~~~k~i~i~~p~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~l  232 (413)
T PLN00175        164 KTV----TLRPPD--F-AVPEDELKAAFT---SKTRAILINTPHNPTGKMF-TREELELIASLCKENDVLAFTDEVYDKL  232 (413)
T ss_pred             EEE----ECCccc--C-CCCHHHHHHhcC---cCceEEEecCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEecccCcc
Confidence            111    110000  0 126888988886   4688999999999999877 8999999999999999999999999987


Q ss_pred             cccccCccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          175 ARSGRMLAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       175 ~~~g~~~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      .+.+..... ...+....   +.||||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++.++++....  
T Consensus       233 ~~~~~~~s~~~~~~~~~~vi~i~SfSK~~~~~G~-RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~Q~a~~~~l~~~~~~~  311 (413)
T PLN00175        233 AFEGDHISMASLPGMYERTVTMNSLGKTFSLTGW-KIGWAIAPPHLTWGVRQAHSFLTFATATPMQWAAVAALRAPESYY  311 (413)
T ss_pred             ccCCcccChhhCCCCcCcEEEEecchhhccCcch-heeeeEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCHHHH
Confidence            544432221 11122222   338999999 899 9999999999988887655556788899999998888863211  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC---------
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH---------  317 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~---------  317 (374)
                      ++..++++++++.+.+.|++.     ++....+..+.|+|+.++... ..+..++++.|+ ++||.+.|+.         
T Consensus       312 ~~~~~~~~~~~~~l~~~L~~~-----g~~~~~p~g~~f~~~~~~~~~-~~~~~~~~~~ll~~~gV~v~pg~~F~~~~~~~  385 (413)
T PLN00175        312 EELKRDYSAKKDILVEGLKEV-----GFKVYPSSGTYFVMVDHTPFG-FENDIAFCEYLIEEVGVAAIPPSVFYLNPEDG  385 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CCeecCCCeeEEEEEeccccC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCCCC
Confidence            234455555666666655543     222112233566777663211 013578999987 5699998751         


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+++||++.  .+++++++++++|+++++
T Consensus       386 ~~~iRls~~--~~~e~l~~~~~rL~~~~~  412 (413)
T PLN00175        386 KNLVRFAFC--KDEETLRAAVERMKTKLK  412 (413)
T ss_pred             CCEEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence            369999955  589999999999998876

>PRK07681 aspartate aminotransferase; Provisional

Probab=99.97  E-value=3.3e-28  Score=230.02  Aligned_cols=292  Identities=13%  Similarity=0.146  Sum_probs=202.5

Q ss_pred             CcHHHHHHHHhccc----CC-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMF----GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++++.+..    .. +++++|+|+++++..++.++     ..+|     |.|++.+|+|.++...+...+....
T Consensus        73 ~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~-----~~~G-----d~Vlv~~P~y~~~~~~~~~~G~~~~  142 (399)
T PRK07681         73 EFHEAVTEYYNNTHNVILNADKEVLLLMGSQDGLVHLPMVY-----ANPG-----DIILVPDPGYTAYETGIQMAGATSY  142 (399)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCeEEECCCcHHHHHHHHHHh-----CCCC-----CEEEECCCCccchHHHHHhcCCEEE
Confidence            34445555555432    34 68999999999999988877     5677     9999999999887665554443221


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+...  ..|++++++++.   ++++++++++++||+|.+. +++.+++|.++|++||++||+||+|.++.
T Consensus       143 ~v----~~~~~~~~--~~d~~~l~~~~~---~~~k~v~l~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~  212 (399)
T PRK07681        143 YM----PLKKENDF--LPDLELIPEEIA---DKAKMMILNFPGNPVPAMA-HEDFFKEVIAFAKKHNIIVVHDFAYAEFY  212 (399)
T ss_pred             EE----ecCCCCCC--cCCHHHHHHhcc---ccceEEEEeCCCCCcCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhe
Confidence            11    11110000  026888887775   4688899888899999887 89999999999999999999999999875


Q ss_pred             ccccCc-cc-ccCCCC---CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          176 RSGRML-AS-DWEEVR---PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       176 ~~g~~~-~~-~~~~~~---~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      +.+... .. ...+..   ..+.||||.++ +|+ |+||+++++++++.+........++.+.+.+.++.++++....  
T Consensus       213 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~  291 (399)
T PRK07681        213 FDGNKPISFLSVPGAKEVGVEINSLSKSYSLAGS-RIGYMIGNEEIVRALTQFKSNTDYGVFLPIQKAACAALRNGAAFC  291 (399)
T ss_pred             eCCCCCCChhhCCCCcccEEEEeecccccCCccc-eeEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHH
Confidence            443321 11 111111   12349999998 899 9999999999988887654445677888888888887764211  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC------CCE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTI  320 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~  320 (374)
                      ++..+.++++.+.+.+.|++.     ++....+..|.++|+.++...   +..++++.|++ +||.+.|+.      .++
T Consensus       292 ~~~~~~~~~~~~~l~~~L~~~-----g~~~~~p~~g~f~~~~l~~~~---~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~  363 (399)
T PRK07681        292 EKNRGIYQERRDTLVDGFRTF-----GWNVDKPAGSMFVWAEIPKGW---TSLSFAYALMDRANVVVTPGHAFGPHGEGF  363 (399)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CCcccCCCeeeEEEEECCCCC---CHHHHHHHHHHhCCEEEeCChhhCcCCCCe
Confidence            122333444444444444432     222222345888898887544   57889999987 899998852      479


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +||++.  .+++++++++++|++
T Consensus       364 iRis~~--~~~~~~~~~l~~l~~  384 (399)
T PRK07681        364 VRIALV--QDEEVLQQAVENIRN  384 (399)
T ss_pred             EEEEec--CCHHHHHHHHHHHHH
Confidence            999955  578999999999988

>PRK03317 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=3.9e-28  Score=227.22  Aligned_cols=287  Identities=16%  Similarity=0.149  Sum_probs=195.3

Q ss_pred             CCCCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           18 FYNDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      |+.+...+|.+.+++++        ..+++++|+|+++++..++.++     .++|     |.|++..|+|+++...+..
T Consensus        62 Y~~~g~~~lr~aia~~~~~~~~~~~~~~~I~it~G~~~~l~~~~~~~-----~~~g-----d~v~v~~P~y~~~~~~~~~  131 (368)
T PRK03317         62 YPDRDAVALRADLAAYLTAQTGVGLTVENVWAANGSNEILQQLLQAF-----GGPG-----RTALGFVPSYSMHPIIARG  131 (368)
T ss_pred             CCCCchHHHHHHHHHHhhhhccCCCChhhEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCChHHHHHHHHh
Confidence            33434444555555543        3468999999999999999988     5667     9999999999887655443


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      .+.... .   .+...+..    .|+++++++++++  +++++++++++||+|.+.+    .+++.++|+.++++||+||
T Consensus       132 ~g~~~~-~---~~~~~~~~----~d~~~l~~~~~~~--~~~~i~l~~p~NPtG~~~~----~~~l~~l~~~~~~~lI~DE  197 (368)
T PRK03317        132 THTEWV-E---GPRAADFT----LDVDAAVAAIAEH--RPDVVFLTSPNNPTGTALP----LDDVEAILDAAPGIVVVDE  197 (368)
T ss_pred             cCCeeE-E---cccCCCCC----CCHHHHHHHHhcc--CCCEEEEeCCCCCCCCCCC----HHHHHHHHHHCCceEEEeC
Confidence            221110 0   00000111    1789999888743  5667778888999999986    6666666666689999999


Q ss_pred             cccCCcccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      +|++|.+.+........+..++++   ||||.++ +|+ |+||+++++++++.+....  .+++.+++++.++.++++..
T Consensus       198 ~y~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~Gl-RiG~~~~~~~~~~~l~~~~--~~~~~s~~~~~a~~~~l~~~  274 (368)
T PRK03317        198 AYAEFRRSGTPSALTLLPEYPRLVVSRTMSKAFAFAGG-RLGYLAAAPAVVDALRLVR--LPYHLSAVTQAAARAALRHA  274 (368)
T ss_pred             CchhhcccCCcCHHHHHHhCCCEEEEEechhhhccchh-hhhhhhCCHHHHHHHHhcC--CCCCCCHHHHHHHHHHhhCH
Confidence            999886555433333333345655   9999998 799 9999999999998887533  46788899999988888743


Q ss_pred             hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEE-EeccCCCchhHHHHHHHHHHCCeEeccCC-CCEEE
Q 017259          246 RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV-EFDKTALPVSAYDICLKMKERGILAKPTH-DTIVR  322 (374)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~-~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~lR  322 (374)
                      .. .+..++++++.+.+.+.|+..     ++ ....+.+.++++ .++      +..++.+.|.++||.+++.+ ++++|
T Consensus       275 ~~~~~~~~~~~~~~~~l~~~L~~~-----g~-~~~~~~~~~~~~~~~~------~~~~~~~~l~~~Gv~v~~~~~~~~iR  342 (368)
T PRK03317        275 DELLASVAALRAERDRVVAWLREL-----GL-RVAPSDANFVLFGRFA------DRHAVWQGLLDRGVLIRDVGIPGWLR  342 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-----CC-EeCCCCCcEEEEeccC------CHHHHHHHHHHCCEEEEeCCCCCeEE
Confidence            21 122233344444444444332     22 112334555444 222      46789999999999998854 58999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++   .+.++++.++++|+++++
T Consensus       343 i~~---~~~~~~~~~~~~l~~~~~  363 (368)
T PRK03317        343 VTI---GTPEENDAFLAALAEVLA  363 (368)
T ss_pred             Eec---CCHHHHHHHHHHHHHHHH
Confidence            993   477899999999998876

>PRK07366 succinyldiaminopimelate transaminase; Validated

Probab=99.96  E-value=1.4e-27  Score=224.97  Aligned_cols=293  Identities=12%  Similarity=0.144  Sum_probs=192.9

Q ss_pred             CcHHHHHHHHhccc----CCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMF----GYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++++.+.+    ..+ ++++|+|+++++..++.++     ..+|     |+|++.+|+|.++...+...+....
T Consensus        72 ~lr~aia~~~~~~~g~~~~~~~~I~it~Gs~~al~~~~~~l-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~~~  141 (388)
T PRK07366         72 DFREAAAQWYEQRFGLAVDPETEVLPLIGSQEGTAHLPLAV-----LNPG-----DFALLLDPGYPSHAGGVYLAGGQIY  141 (388)
T ss_pred             HHHHHHHHHHHHhhCCcCCCcCeEEECCCcHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHhcCCEEE
Confidence            34445555554432    345 6999999999999998887     5677     9999999999887666555443221


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+...  ..|++++++.+.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.
T Consensus       142 ~v----~~~~~~~~--~~d~~~l~~~~~---~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~~~  211 (388)
T PRK07366        142 PM----PLRAENDF--LPVFADIPTEVL---AQARLMVLSYPHNPTTAIA-PLSFFQEAVAFCQQHDLVLVHDFPYVDLV  211 (388)
T ss_pred             EE----ECCCccCC--CCCHHHHHHhhc---ccceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEecchhhcc
Confidence            11    11110000  125677766654   4678889988999999877 89999999999999999999999999875


Q ss_pred             ccccC--cccccC-CCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          176 RSGRM--LASDWE-EVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       176 ~~g~~--~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +.+..  ...... .....   +-||||.++ +|+ |+||+++++++++.+........++.....+.++.+++..  .+
T Consensus       212 ~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~~Gl-RiG~~v~~~~li~~l~~~~~~~~~~~~~~~~~~a~~~l~~--~~  288 (388)
T PRK07366        212 FDGEVEPPSILQADPEKSVSIEFFTLSKSYNMGGF-RIGFAIGNAQLIQALRQVKAVVDFNQYRGILNGAIAALTG--PQ  288 (388)
T ss_pred             cCCCCCCCChhhCCCCcccEEEEeecccccCCcch-hheehcCCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhC--cH
Confidence            44421  111111 11122   239999997 899 9999999999988887543333343333344455555531  22


Q ss_pred             cH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------
Q 017259          249 KL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------  317 (374)
Q Consensus       249 ~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------  317 (374)
                      ++    ++.++++++.+.+.|++.     +.....+..|.|+|+.+++.. ..+..++++.|+ ++||.+.|+.      
T Consensus       289 ~~l~~~~~~~~~~r~~l~~~L~~~-----~~~~~~p~~g~f~~~~~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~  362 (388)
T PRK07366        289 ATVQQTVQIFRQRRDAFINALHQI-----GWPVPLPEATMYVWAKLPEPW-QGNSVEFCTQLVAQTGVAASPGSGFGKSG  362 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-----CCcccCCCeeEEEEEECCccc-CCCHHHHHHHHHHhCCEEEeCchHhCcCC
Confidence            33    344444444454444432     222223456888898886521 013577888875 6799999862      


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .+++||++.  .+++++++++++|+++
T Consensus       363 ~~~iRi~~~--~~~~~l~~~l~rl~~~  387 (388)
T PRK07366        363 EGYVRFALV--HDPDILEEAVERIAAF  387 (388)
T ss_pred             CCeEEEEec--CCHHHHHHHHHHHHHh
Confidence            479999954  5789999999999865

>PRK07179 hypothetical protein; Provisional

Probab=99.96  E-value=1.5e-27  Score=226.05  Aligned_cols=302  Identities=16%  Similarity=0.192  Sum_probs=213.0

Q ss_pred             hHHHHHHHhcc---ccCcCCC--CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLT---LSSRAFY--NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~---~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++++..   +.++.+.  .+...+|+++|++++|.+.+++++||++|++.+++.+     ..+|     +.|++.
T Consensus        75 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~le~~la~~~g~~~~~~~~sG~~An~~~l~~l-----~~~g-----~~v~~~  144 (407)
T PRK07179         75 KAQIAALQEEGDSLVMSAVFLHDDSPKPQFEKKLAAFTGFESCLLCQSGWAANVGLLQTI-----ADPN-----TPVYID  144 (407)
T ss_pred             HHHHHHHHHhCCCCCccccccCCchHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh-----CCCC-----CEEEEE
Confidence            57777776642   2233322  3578899999999999999999999999999999988     4456     888887


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      ...+.... ......+            ..+..++++|++++++.++++  .++++++++++|++|.+.+    +++|.+
T Consensus       145 ~~~h~s~~-~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~--~~~lV~v~~v~n~tG~i~p----l~~I~~  205 (407)
T PRK07179        145 FFAHMSLW-EGVRAAG------------AQAHPFRHNDVDHLRRQIERH--GPGIIVVDSVYSTTGTIAP----LADIVD  205 (407)
T ss_pred             CCcCHHHH-HHHHHCC------------CeEEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCCcccc----HHHHHH
Confidence            66543322 1111111            123334446999999999742  4788999999999999998    999999


Q ss_pred             HHHhcCCEEEEeccccC--CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC--CCC
Q 017259          157 LCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--STF  228 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~~  228 (374)
                      +|++||+++|+||+|+.  ++..|..+ ...++.  .+|++  |+||+++  . ++|++++++++++.+......  .+.
T Consensus       206 l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~vdi~~~S~sK~~g--~-~~G~l~~~~~~~~~~~~~~~~~~~~~  281 (407)
T PRK07179        206 IAEEFGCVLVVDESHSLGTHGPQGAGL-VAELGLTSRVHFITASLAKAFA--G-RAGIITCPRELAEYVPFVSYPAIFSS  281 (407)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCch-HHhcCCCCCCCEEEeechHhhh--c-cCeEEEeCHHHHHHHHHhCcCeeeCC
Confidence            99999999999999983  33344332 223343  23664  6789986  3 678899988887766532111  122


Q ss_pred             CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.++...+++.++++.+... +..++++++.+++++.|++++  + .+    .+.+.++++.++...   ....+.+.|.
T Consensus       282 t~~~~~~aa~~aal~~~~~~~~~~~~l~~~~~~l~~~L~~~g--~-~v----~~~~~i~~l~~~~~~---~~~~~~~~L~  351 (407)
T PRK07179        282 TLLPHEIAGLEATLEVIESADDRRARLHANARFLREGLSELG--Y-NI----RSESQIIALETGSER---NTEVLRDALE  351 (407)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--C-CC----CCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence            22445555566777776544 467888899999999888762  1 11    134677777665432   4577888999


Q ss_pred             HCCeEe----ccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILA----KPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v----~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||.+    .+.   ..+.+||+++..+|++|+++++++|+++++
T Consensus       352 ~~GI~~~~~~~p~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~~~  397 (407)
T PRK07179        352 ERNVFGAVFCAPATPKNRNLIRLSLNADLTASDLDRVLEVCREARD  397 (407)
T ss_pred             HCCceEeeecCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH
Confidence            999974    332   257999999999999999999999999988

>COG0079 HisC Histidinol-phosphate/aromatic aminotransferase and cobyric acid decarboxylase [Amino acid transport and metabolism]

Probab=99.96  E-value=1.1e-27  Score=219.61  Aligned_cols=285  Identities=20%  Similarity=0.255  Sum_probs=215.7

Q ss_pred             CCCCCcHHHHHHHHhcccC-C--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           17 AFYNDKFPVFAERLTSMFG-Y--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~-~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .|+.+...++.+.++++++ .  ++|+.++|+++.+...++++     ..+|     |.|++..|+|..+...+...+..
T Consensus        53 rYPd~~~~~l~~a~a~~~~~~~~~~V~~gnGsde~i~~l~~~~-----~~~g-----d~vl~~~Ptf~~Y~~~a~~~g~~  122 (356)
T COG0079          53 RYPDPDYRELRAALAEYYGVVDPENVLVGNGSDELIELLVRAF-----VEPG-----DTVLIPEPTFSMYEIAAQLAGAE  122 (356)
T ss_pred             cCCCCcHHHHHHHHHHHhCCCCcceEEEcCChHHHHHHHHHHh-----hcCC-----CEEEEcCCChHHHHHHHHhcCCe
Confidence            4677789999999999987 3  58899999999999999998     4566     99999999997776666655432


Q ss_pred             ccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           94 NEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                   +..++.    .|++.+.+++.   ++++++++.+++||||... +.+.++++.+.+.+ +.+||+||
T Consensus       123 -------------~~~v~~~~~~~d~~~~~~~~~---~~~~lv~i~nPNNPTG~~~-~~~~l~~l~~~~~~-~~~vVvDE  184 (356)
T COG0079         123 -------------VVKVPLKEFRLDLDAILAAIR---DKTKLVFLCNPNNPTGTLL-PREELRALLEALPE-GGLVVIDE  184 (356)
T ss_pred             -------------EEEecccccccCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEeC
Confidence                         222222    26788877777   4789999999999999998 68888888888888 99999999


Q ss_pred             cccCCcccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      +|.+|..  .. ........++++   ||||.+| +|+ |+||+++++++++.+..  ....|+.+.++++++.++++.-
T Consensus       185 AY~eF~~--~~-~~~l~~~~~nlivlRTfSKa~gLAGl-RlGy~ia~~~~i~~l~~--vr~p~~v~~~a~~aa~aal~~~  258 (356)
T COG0079         185 AYIEFSP--ES-SLELLKYPPNLIVLRTFSKAFGLAGL-RVGYAIANPELIAALNK--VRPPFNVSSPALAAAIAALRDA  258 (356)
T ss_pred             chhhcCC--ch-hhhhccCCCCEEEEEecHHhhhcchh-ceeeccCCHHHHHHHHH--hcCCCCCCHHHHHHHHHHcccH
Confidence            9998854  21 222222233344   9999999 799 99999999999999885  5668888999999999988753


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCE
Q 017259          246 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTI  320 (374)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~  320 (374)
                         ++.+...+....-+++|.+....+ +.....++..+|+.+.+++.    ....+.+.|.++||+++...     +++
T Consensus       259 ---~~~~~~~~~~~~~r~rl~~~l~~~-~~~~v~pS~aNFvlv~~~~~----~~~~l~~~L~~~giivR~~~~~~~~~~~  330 (356)
T COG0079         259 ---DYLEESVERIREERERLYAALKAL-GLFGVFPSQANFVLVRVPDA----EAAALAEALLKKGILVRDCSSVGLLPGY  330 (356)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHhC-CCCeecCCCCcEEEEECCCc----cHHHHHHHHHHCCEEEEeCCCCCCCCCe
Confidence               344444444444444444444333 22223445588888877642    35689999999999999874     369


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||+   ..++++.++++++|+++++
T Consensus       331 lRit---vgt~een~~ll~AL~~~~~  353 (356)
T COG0079         331 LRIT---VGTPEENDRLLAALREVLK  353 (356)
T ss_pred             EEEE---eCCHHHHHHHHHHHHHHHh
Confidence            9999   6788999999999999886

>PRK06225 aspartate aminotransferase; Provisional

Probab=99.96  E-value=1.4e-27  Score=224.42  Aligned_cols=301  Identities=15%  Similarity=0.198  Sum_probs=206.2

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ....++++.++++++.  +++++++|+++++..++..+     ..+|     ++|++.+|+|+.....+...+...... 
T Consensus        66 ~g~~~lr~~ia~~l~~~~~~v~~~~g~t~al~~~~~~~-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~~~~v-  134 (380)
T PRK06225         66 EGFPELRELILKDLGLDDDEALITAGATESLYLVMRAF-----LSPG-----DNAVTPDPGYLIIDNFASRFGAEVIEV-  134 (380)
T ss_pred             cchHHHHHHHHHhcCCCCCcEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCCcchHHHHHHhCceEEee-
Confidence            3467899999998754  58999999999999999887     4566     899999999976543332222211110 


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                         +....-... ..|++++++.+.   ++++++++.+++|++|.+. +.+.+++|.++|++||+++|+||+|.+|.. +
T Consensus       135 ---~~~~~~~~~-~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~-~  205 (380)
T PRK06225        135 ---PIYSEECNY-KLTPELVKENMD---ENTRLIYLIDPLNPLGSSY-TEEEIKEFAEIARDNDAFLLHDCTYRDFAR-E  205 (380)
T ss_pred             ---ccccccCCc-cCCHHHHHhhcC---CCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCcEEEEehhHHHHhc-c
Confidence               100000000 126888888776   4688888778888898877 799999999999999999999999987632 2


Q ss_pred             cCccccc-CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHH
Q 017259          179 RMLASDW-EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH  256 (374)
Q Consensus       179 ~~~~~~~-~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~  256 (374)
                      ....... ......+.||||.++ +|+ |+||+++++++++.+.... ..+++.+.+++.++.++++..  +++.+++++
T Consensus       206 ~~~~~~~~~~~~i~~~s~SK~~g~~G~-RiG~i~~~~~l~~~~~~~~-~~~~~~~~~~~~~a~~~l~~~--~~~~~~~~~  281 (380)
T PRK06225        206 HTLAAEYAPEHTVTSYSFSKIFGMAGL-RIGAVVATPDLIEVVKSIV-INDLGTNVIAQEAAIAGLKVK--DEWIDRIRR  281 (380)
T ss_pred             CCchhhcCCCCEEEEeechhhcCCccc-eeEEEecCHHHHHHHHHHH-hcccCCCHHHHHHHHHHHhcc--hHHHHHHHH
Confidence            2111111 112223559999998 798 9999999999988877532 235677888888887777642  344455544


Q ss_pred             HHHHHHHHHHHHHHhCCCc-eeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC-------CCCEEEEecCCC
Q 017259          257 LGEELRQHLFKIQQQFPNY-VKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLS  328 (374)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~-~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~~~~lRi~~~~~  328 (374)
                      ..++.++.+.+....+++. ....++.+.++|+.++...  .+..++.+.|.++||.++++       +.+++|+++  .
T Consensus       282 ~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~l~~~gi~v~~g~~~~~~~~~~~iR~s~--~  357 (380)
T PRK06225        282 TTFKNQKLIKEAVDEIEGVFLPVYPSHGNMMVIDISEAG--IDPEDLVEYLLERKIFVRQGTYTSKRFGDRYIRVSF--S  357 (380)
T ss_pred             HHHHHHHHHHHHHHhCcCCccccCCCCCeEEEEEccccc--CCHHHHHHHHHHCCEEEcCCcccCcCCCCceEEEEe--C
Confidence            4444444444443333222 1223345778888875421  15788999999999999875       246899995  4


Q ss_pred             CCHHHHHHHHHHHHHHHhccCC
Q 017259          329 ISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       329 ~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .+++++++++++|+++++ .++
T Consensus       358 ~~~e~l~~~~~~l~~~~~-~~~  378 (380)
T PRK06225        358 IPREQVEVFCEEFPDVVE-TLR  378 (380)
T ss_pred             CCHHHHHHHHHHHHHHHH-Hhh
Confidence            578999999999999998 654

>KOG1405 consensus 4-aminobutyrate aminotransferase [Amino acid transport and metabolism]

Probab=99.96  E-value=9.5e-28  Score=207.67  Aligned_cols=314  Identities=23%  Similarity=0.369  Sum_probs=246.5

Q ss_pred             cHHHHHHHHhc----cc--CCCeEEecCChHHHHHHHHHHHH-HcccccccCCCC------------------ccEEEEe
Q 017259           22 KFPVFAERLTS----MF--GYDMVLPMNTGAEGVETALKLAR-KWGYVKKKFSID------------------EAIIVSC   76 (374)
Q Consensus        22 ~~~~l~~~l~~----~~--~~~~~~~~~~gs~a~~~al~~~~-~~~~~~~G~~~~------------------~~~vi~~   76 (374)
                      +..++++.|..    ..  |.+.+++.-+|+.|++.|++++- .|...++| ..+                  .-.|+.+
T Consensus       120 P~kd~~~~l~~~ll~~APKG~~~v~tm~cGs~aNEnA~K~afiwy~~k~rg-~~~~s~~e~eScm~n~aPg~P~lsvlsF  198 (484)
T KOG1405|consen  120 PPKDFAEKLRQSLLSIAPKGQKQVITMLCGSCANENAYKTAFIWYRAKERG-QAGFSAEELESCMINQAPGAPDLSVLSF  198 (484)
T ss_pred             ChhhHHHHHHHHHHhhCcchHHHHHHHhccccccHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHhcCCCCCCceeeeee
Confidence            33444444444    33  77789999999999999998874 33222222 111                  2569999


Q ss_pred             ccCCCCcccccccccCCccccc-cCCC--CC-CCceeccCC--------------CHHHHHHHHHhcC---CcEEEEEEc
Q 017259           77 CGCFHGRTLAAISMSCDNEAIR-GFGP--LL-PGHLKVDFG--------------DITALEKIFKESG---DQIAGFLFE  135 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~-~~~~--~~-~~~~~~~~~--------------d~~~le~~l~~~~---~~~~~vi~~  135 (374)
                      .++|||.+..+.+.+..-.++. .+..  |+ .+.....|+              -++++|+.|..+.   ..++++|+|
T Consensus       199 ~gaFHGR~~g~lstT~SKpIHKldiPaFdWPiA~fP~ykYPLdenv~~N~ked~~Cl~~Ve~li~~~~~k~~pVaaiIvE  278 (484)
T KOG1405|consen  199 KGAFHGRTFGSLSTTHSKPIHKLDIPAFDWPIAPFPRYKYPLDENVAENKKEDQGCLAEVEDLIVKYRKKKKPVAAIIVE  278 (484)
T ss_pred             ccccccccccccccccCccccccCCCCCCCCCCCCccccCChhhhhhhhhhhhhhHHHHHHHHHHHHhhcCCCeEEEEee
Confidence            9999999999888776433221 1111  10 111111111              1677888888654   468999999


Q ss_pred             cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCC--CCcEEEeccccc-CCccchhhheeC
Q 017259          136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV--RPDMVILGKALG-GGVIPVSAVLAD  212 (374)
Q Consensus       136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~--~~d~~s~sK~~~-~G~~~~G~~~~~  212 (374)
                      |+++.+|.-..|+++++.|.++|++||+.+|+||+|+|.|.+|..|+.+++++  .||+++|||-+- ||+      .-.
T Consensus       279 PIQsEGGDnhaSp~Ff~kLrdi~~Kh~v~fivDEVQTGgGaTGk~WaHehw~l~~PpD~vTFSKK~q~gGf------fh~  352 (484)
T KOG1405|consen  279 PIQSEGGDNHASPDFFRKLRDITKKHGVAFIVDEVQTGGGATGKFWAHEHWNLDSPPDVVTFSKKFQTGGF------FHD  352 (484)
T ss_pred             chhccCCCccCCHHHHHHHHHHHHhcCeEEEeeeeecCCCccCceeeehhcCCCCCccceehhhhhhcCcc------ccC
Confidence            99999999999999999999999999999999999999999999999999876  579999998765 555      222


Q ss_pred             HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259          213 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK  292 (374)
Q Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  292 (374)
                      +++. .=.+.....||.+.+.-...+.++++.++++++.......++.+..+|.++...+|+.+...+++|.|+.+++++
T Consensus       353 ~~fr-pn~pYrifNTWmGdP~k~lll~~vv~~I~~~~Ll~n~~~vG~~l~~gL~~Lq~~~p~~~~~~RGrGTF~a~d~ps  431 (484)
T KOG1405|consen  353 EEFR-PNEPYRIFNTWMGDPSKNLLLEEVVQEIKREDLLNNVAHVGKALLKGLLELQAKYPGKINNLRGRGTFIAWDCPS  431 (484)
T ss_pred             cccC-CCchHHHhhhhcCChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhCchhhhcccccceEEEEeCCC
Confidence            2221 111223556888888888888899999999999999999999999999999999988888899999999999988


Q ss_pred             CCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          293 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       293 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.   ..++++..++.+|+.+..++...+|+.|++..++-+.+-+++++++++.
T Consensus       432 ~~---~Rdk~i~~~~~nGv~~GGCg~~siRfRPsLvf~~~Ha~i~l~~~~k~l~  482 (484)
T KOG1405|consen  432 GS---IRDKLILIARLNGVNLGGCGDKSIRFRPSLVFRKHHADIFLDIFDKILA  482 (484)
T ss_pred             hH---HHHHHHHHHHHcCceecccccceeeeccceeehhhhHHHHHHHHHHHhc
Confidence            76   7889999999999999999999999999999999999999999999886

>PRK08960 hypothetical protein; Provisional

Probab=99.96  E-value=2e-27  Score=223.82  Aligned_cols=278  Identities=15%  Similarity=0.125  Sum_probs=192.3

Q ss_pred             CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC
Q 017259           35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD  114 (374)
Q Consensus        35 ~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  114 (374)
                      ..+++++|+|+++++..++.++     ..+|     |+|++.+|+|..+...+...+......    +...+...  -.|
T Consensus        91 ~~~~i~it~G~~~al~~~~~~~-----~~~g-----d~vlv~~p~y~~~~~~~~~~g~~~~~v----~~~~~~~~--~~d  154 (387)
T PRK08960         91 DPERILVTPGGSGALLLASSLL-----VDPG-----KHWLLADPGYPCNRHFLRLVEGAAQLV----PVGPDSRY--QLT  154 (387)
T ss_pred             ChhhEEEccCcHHHHHHHHHHh-----cCCC-----CEEEEcCCCCcchHHHHHhcCCeEEEE----ecCcccCC--CCC
Confidence            4568999999999999999877     5677     999999999987765554433211111    11010000  026


Q ss_pred             HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEE-
Q 017259          115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV-  193 (374)
Q Consensus       115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~-  193 (374)
                      ++++++.++   ++++++++.+++||+|.+. +.+.+++|+++|++||++||+||+|.++.+.+....  .....++++ 
T Consensus       155 ~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~Y~~~~~~~~~~~--~~~~~~~vi~  228 (387)
T PRK08960        155 PALVERHWN---ADTVGALVASPANPTGTLL-SRDELAALSQALRARGGHLVVDEIYHGLTYGVDAAS--VLEVDDDAFV  228 (387)
T ss_pred             HHHHHHHhC---ccceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccccccCCCCCC--hhhccCCEEE
Confidence            888888776   4567777777889999888 899999999999999999999999998744332211  122334543 


Q ss_pred             --Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH----HHHHHHHHHHHHHHH
Q 017259          194 --ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA----ERSAHLGEELRQHLF  266 (374)
Q Consensus       194 --s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~----~~~~~~~~~~~~~l~  266 (374)
                        ||||.++ +|+ |+||+++++++++.+.......+.+.+.+.+.++.++++. ..+++.    +.++++.+.+.+.|+
T Consensus       229 ~~S~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~-~~~~~l~~~~~~~~~~~~~l~~~L~  306 (387)
T PRK08960        229 LNSFSKYFGMTGW-RLGWLVAPPAAVPELEKLAQNLYISASTPAQHAALACFEP-ETLAILEARRAEFARRRDFLLPALR  306 (387)
T ss_pred             EeecccccCCccc-EEEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhhc-CcHHHHHHHHHHHHHHHHHHHHHHH
Confidence              8999997 799 9999999999888877554445567788898888887752 112233    334444444444444


Q ss_pred             HHHHhCCCcee-eEEEEeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccCC-------CCEEEEecCCCCCHHHHHH
Q 017259          267 KIQQQFPNYVK-EVRGRGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQE  336 (374)
Q Consensus       267 ~~~~~~~~~~~-~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~  336 (374)
                      .    + +... ..+..+.++|+.+++ ..   +..++++.|+ ++||.+.|+.       .+++||+++  .+.+.+.+
T Consensus       307 ~----~-~~~~~~~p~g~~f~~~~~~~~~~---~~~~~~~~ll~~~gi~v~pg~~f~~~~~~~~iRi~~~--~~~~~l~~  376 (387)
T PRK08960        307 E----L-GFGIAVEPQGAFYLYADISAFGG---DAFAFCRHFLETEHVAFTPGLDFGRHQAGQHVRFAYT--QSLPRLQE  376 (387)
T ss_pred             h----c-CCcCCcCCCeeEEEEEeccccCC---CHHHHHHHHHHhCCEEEcCchHhCCCCCCCeEEEEec--CCHHHHHH
Confidence            3    2 2221 123457788888764 22   5678998876 5799998851       469999966  36788999


Q ss_pred             HHHHHHHHHh
Q 017259          337 GSKALHDVLE  346 (374)
Q Consensus       337 ~~~~l~~~~~  346 (374)
                      ++++|+++++
T Consensus       377 al~~l~~~~~  386 (387)
T PRK08960        377 AVERIARGLR  386 (387)
T ss_pred             HHHHHHHHHh
Confidence            9998887764

>PRK05957 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.5e-27  Score=223.23  Aligned_cols=300  Identities=13%  Similarity=0.170  Sum_probs=205.6

Q ss_pred             CCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++.+++.+|     .+++++|+|+++++..++..+     ..+|     |+|++.+|+|..+.......+.
T Consensus        66 G~~~lr~~~~~~l~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~  135 (389)
T PRK05957         66 GIPPLLEAITQKLQQDNGIELNNEQAIVVTAGSNMAFMNAILAI-----TDPG-----DEIILNTPYYFNHEMAITMAGC  135 (389)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCeEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCCcCHHHHHHhcCC
Confidence            344567778888887765     347999999999999888877     4567     9999999999665443332221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...    +.+...+..    -|++++++.++   ++++++++.+++|++|.+. +++.+++|+++|++||++||+||+|.
T Consensus       136 ~~~----~v~~~~~~~----~d~~~l~~~i~---~~~klv~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~li~De~y~  203 (389)
T PRK05957        136 QPI----LVPTDDNYQ----LQPEAIEQAIT---PKTRAIVTISPNNPTGVVY-PEALLRAVNQICAEHGIYHISDEAYE  203 (389)
T ss_pred             EEE----EeecCCCCC----cCHHHHHHhcC---cCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEeccch
Confidence            111    111111111    27899998886   4788888888899999888 79999999999999999999999999


Q ss_pred             CCcccccC-ccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          173 GLARSGRM-LAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       173 ~~~~~g~~-~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      ++.+.+.. ... ...+....   +.||||.++ +|+ |+||+++++++++.+.........+.+.+++.++..+++...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  282 (389)
T PRK05957        204 YFTYDGVKHFSPGSIPGSGNHTISLYSLSKAYGFASW-RIGYMVIPIHLLEAIKKIQDTILICPPVVSQYAALGALQVGK  282 (389)
T ss_pred             hccCCCCCccChhhCCCccCcEEEEecchhhccCccc-eeEEEecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCCh
Confidence            77544322 111 11122222   348999998 799 999999999999888765444455667788888877775311


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC-----
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-----  317 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----  317 (374)
                      .  ++..+.++++++.+.+.|+.    +++.... ....|.++|+.++...   +..++++.|+ ++||.+.|+.     
T Consensus       283 ~~~~~~~~~~~~~r~~l~~~L~~----~~~~~~~~~~~gg~~~~~~~~~~~---~~~~~~~~l~~~~gv~v~pg~~f~~~  355 (389)
T PRK05957        283 SYCQQHLPEIAQVRQILLKSLGQ----LQDRCTLHPANGAFYCFLKVNTDL---NDFELVKQLIREYRVAVIPGTTFGMK  355 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh----cCCCccccCCCeeEEEEEeCCCCC---ChHHHHHHHHHHCCEEEccchhhCCC
Confidence            0  12334444444444444443    2222121 2334677888876543   6789999987 5799999863     


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       .+++||+++. .+++++++++++|.+.++ .+
T Consensus       356 ~~~~iRis~~~-~~~~~l~~~~~~l~~~~~-~~  386 (389)
T PRK05957        356 NGCYLRIAYGA-LQKATAKEGIERLVQGLK-TI  386 (389)
T ss_pred             CCCEEEEEEec-CCHHHHHHHHHHHHHHHH-hh
Confidence             4699999653 478899999999998887 43

>PRK07309 aromatic amino acid aminotransferase; Validated

Probab=99.96  E-value=2.3e-27  Score=223.59  Aligned_cols=285  Identities=15%  Similarity=0.177  Sum_probs=196.0

Q ss_pred             CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHH
Q 017259           37 DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDIT  116 (374)
Q Consensus        37 ~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~  116 (374)
                      +++++|+|+++|++.++..+     ..+|     |+|++.+|+|.++.......+......    +.  +..... .|++
T Consensus        92 ~~i~it~G~~~al~~~~~~~-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~~~~~----~~--~~~~~~-~d~~  154 (391)
T PRK07309         92 NEILVTIGATEALSASLTAI-----LEPG-----DKVLLPAPAYPGYEPIVNLVGAEIVEI----DT--TENDFV-LTPE  154 (391)
T ss_pred             CcEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCCcchHHHHHHcCCEEEEE----ec--CCcCCc-CCHH
Confidence            57999999999999998877     5567     999999999988765544433221111    11  000000 2789


Q ss_pred             HHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC-cccccCCCC--CcEE
Q 017259          117 ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVR--PDMV  193 (374)
Q Consensus       117 ~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~~~--~d~~  193 (374)
                      ++++++++.+++++++++++++||+|.+. +.+.+++|.++|++||+++|+||+|.++...+.. .........  .-+.
T Consensus       155 ~l~~~~~~~~~~~~~i~l~~P~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~D~~y~~~~~~~~~~~~~~~~~~~~~i~~~  233 (391)
T PRK07309        155 MLEKAILEQGDKLKAVILNYPANPTGVTY-SREQIKALADVLKKYDIFVISDEVYSELTYTGEPHVSIAEYLPDQTILIN  233 (391)
T ss_pred             HHHHHhhccCCCeEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEccccceeeCCCCCCCHHHhccCCEEEEe
Confidence            99999876545788999988888999777 7999999999999999999999999987543422 111111111  1133


Q ss_pred             Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHH
Q 017259          194 ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQ  270 (374)
Q Consensus       194 s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~  270 (374)
                      ||||.++ +|+ |+||+++++++++.+.........+.+.+++.++.++++....  ....++++++++++.+.|+..  
T Consensus       234 S~SK~~g~~Gl-RvG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--  310 (391)
T PRK07309        234 GLSKSHAMTGW-RIGLIFAPAEFTAQLIKSHQYLVTAATTMAQFAAVEALTNGKDDALPMKKEYIKRRDYIIEKMTDL--  310 (391)
T ss_pred             cChhhccCccc-eeEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHC--
Confidence            8999998 899 9999999999988887543333446678888888877764211  123455555666666655543  


Q ss_pred             hCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH-HHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          271 QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM-KERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       271 ~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                         ++....+..+.++|+.++... ..+..++++.+ .++||.+.|+.      +++|||+++  .+.+++++++++|++
T Consensus       311 ---~~~~~~p~gg~~~~~~l~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~~~--~~~~~l~~~i~~l~~  384 (391)
T PRK07309        311 ---GFKIIKPDGAFYIFAKIPAGY-NQDSFKFLQDFARKKAVAFIPGAAFGPYGEGYVRLSYA--ASMETIKEAMKRLKE  384 (391)
T ss_pred             ---CCeecCCCeeEEEEEECCCCC-CCCHHHHHHHHHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHH
Confidence               222112234566677776431 11456788775 46899998763      579999955  478899999999999


Q ss_pred             HHhccC
Q 017259          344 VLELDL  349 (374)
Q Consensus       344 ~~~~~~  349 (374)
                      +++ ++
T Consensus       385 ~~~-~~  389 (391)
T PRK07309        385 YME-EH  389 (391)
T ss_pred             HHH-hh
Confidence            987 54

>PRK06348 aspartate aminotransferase; Provisional

Probab=99.96  E-value=2.4e-27  Score=223.04  Aligned_cols=293  Identities=13%  Similarity=0.189  Sum_probs=200.3

Q ss_pred             CcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+++.+++++.+.+    ..+++++|+|+++|+..++.++     ..+|     |+|++..|+|.++...+...+.....
T Consensus        70 ~lr~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~~-----~~~g-----d~vlv~~p~y~~~~~~~~~~g~~~~~  139 (384)
T PRK06348         70 ELIEEIIKYYSKNYDLSFKRNEIMATVGACHGMYLALQSI-----LDPG-----DEVIIHEPYFTPYKDQIEMVGGKPII  139 (384)
T ss_pred             HHHHHHHHHHHHHhCCCCChhhEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCCcchHHHHHHcCCEEEE
Confidence            34445555554432    4578999999999999999988     5667     99999999998776655544332111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                      .    +...+...  ..|++++++.++   ++++++++++++||+|.+. |.+.+++|.++|++||++||+||+|.++.+
T Consensus       140 ~----~~~~~~~~--~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~  209 (384)
T PRK06348        140 L----ETYEEDGF--QINVKKLEALIT---SKTKAIILNSPNNPTGAVF-SKETLEEIAKIAIEYDLFIISDEVYDGFSF  209 (384)
T ss_pred             e----cCCcCcCC--cCCHHHHHHhhC---cCccEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEeccccccee
Confidence            1    11000000  027899988876   4678888888888999877 899999999999999999999999998754


Q ss_pred             cccCccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--hc
Q 017259          177 SGRMLAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EK  249 (374)
Q Consensus       177 ~g~~~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~~  249 (374)
                      .+..... ...+....   +.||||.++ +|+ |+||+++++++.+.+........++.+.+++.++..+++..+.  +.
T Consensus       210 ~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiG~~v~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  288 (384)
T PRK06348        210 YEDFVPMATLAGMPERTITFGSFSKDFAMTGW-RIGYVIAPDYIIETAKIINEGICFSAPTISQRAAIYALKHRDTIVPL  288 (384)
T ss_pred             CCCccchhhcCCCcCcEEEEecchhccCCccc-cceeeecCHHHHHHHHHHHHhccCCCCHHHHHHHHHHHhCcHHHHHH
Confidence            3322111 11122223   338999999 899 9999999999888877554555677889999988888763211  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccCC------CCE
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPTH------DTI  320 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~  320 (374)
                      +.+.++++.+.+.+.|+.    +++ .....+ .|.++|+.++. ..   +..++++.|+ +.||.+.|+.      .++
T Consensus       289 ~~~~~~~r~~~~~~~L~~----~~~-~~~~~p~gg~~~~~~~~~~~~---~~~~l~~~l~~~~gv~v~pg~~f~~~~~~~  360 (384)
T PRK06348        289 IKEEFQKRLEYAYKRIES----IPN-LSLHPPKGSIYAFINIKKTGL---SSVEFCEKLLKEAHVLVIPGKAFGESGEGY  360 (384)
T ss_pred             HHHHHHHHHHHHHHHHhc----CCC-ceeccCCeeEEEEEecccCCC---CHHHHHHHHHHhCCEEEcCchhhccCCCCe
Confidence            333344444444444433    222 222233 45667888763 22   5788999987 5699998853      479


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +|+++  ..+++++++++++|++.
T Consensus       361 iRi~~--~~~~~~l~~al~~l~~~  382 (384)
T PRK06348        361 IRLAC--TVGIEVLEEAFNRIEKM  382 (384)
T ss_pred             EEEEe--cCCHHHHHHHHHHHHhh
Confidence            99995  46888999999988753

>KOG0257 consensus Kynurenine aminotransferase, glutamine transaminase K [Amino acid transport and metabolism]

Probab=99.96  E-value=1.2e-28  Score=219.20  Aligned_cols=318  Identities=15%  Similarity=0.180  Sum_probs=220.9

Q ss_pred             hHHHHHHHhc-cc--cCcCCCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKL-TL--SSRAFYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~-~~--~~~~~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +++++.+... .+  +..++..++...|++.+++++|     .++|++|.|+.+++..++..+     +.+|     |+|
T Consensus        51 ea~~~~~~~~~~~qYt~~~G~p~L~~aL~k~~se~~~~~~~~~~eVlVT~GA~~ai~~~~~~l-----~~~G-----DeV  120 (420)
T KOG0257|consen   51 EAAKNAAKEPSTNQYTRGYGLPQLRKALAKAYSEFYGGLLDPDDEVLVTAGANEAISSALLGL-----LNPG-----DEV  120 (420)
T ss_pred             HHHHHHhccchhccccccCCchHHHHHHHHHHHHHhccccCCcccEEEecCchHHHHHHHHHH-----cCCC-----CEE
Confidence            4555555442 22  2234667777789999998663     357999999999999999988     6777     999


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      |+++|.|..+......+++.+.+...- +..-++..-.+ .|.+++|.+++   ++|+++++++++||+|.+. ++++|+
T Consensus       121 ii~eP~fd~Y~~~~~maG~tpv~v~~~-~~~g~~~s~~~~~D~~~le~~~t---~kTk~Ii~ntPhNPtGkvf-sReeLe  195 (420)
T KOG0257|consen  121 IVFEPFFDCYIPQVVMAGGTPVFVPLK-PKEGNVSSSDWTLDPEELESKIT---EKTKAIILNTPHNPTGKVF-SREELE  195 (420)
T ss_pred             EEecCcchhhhhHHhhcCCcceeeccc-cccccccCccccCChHHHHhhcc---CCccEEEEeCCCCCcCccc-CHHHHH
Confidence            999999999988888888776655322 11111111111 28999999998   7899999999999999998 899999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccC---cccc--cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRM---LASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGS  226 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~---~~~~--~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~  226 (374)
                      +|+++|++||+++|.||+|..+.+.|..   ++..  .++....+.|+||.++ .|| |+||+++++.+...+.+.....
T Consensus       196 ~ia~l~~k~~~lvisDevYe~~v~d~~~h~r~aslPgm~ertitvgS~gKtf~~TGW-rlGW~igp~~L~~~~~~vh~~~  274 (420)
T KOG0257|consen  196 RIAELCKKHGLLVISDEVYEWLVYDGNKHIRIASLPGMYERTITVGSFGKTFGVTGW-RLGWAIGPKHLYSALFPVHQNF  274 (420)
T ss_pred             HHHHHHHHCCEEEEEhhHhHHHhhCCCcceeeecCCchhheEEEeccccceeeeeee-eeeeeechHHhhhhHHHHhhcc
Confidence            9999999999999999999876666642   1211  1222334558999999 699 9999999999998888877777


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh----------hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-
Q 017259          227 TFGGNPLASAVAIASLDVIRD----------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-  295 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~----------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-  295 (374)
                      ++..++..+.|..+++..-..          .++.+.++++++.+.+.|.+++     +....+..+.|.|.+++.... 
T Consensus       275 ~~~~~Tp~q~A~a~a~~~~~~~~~p~~~y~~~~~~~~y~~krdil~k~L~~lg-----~~v~~p~gayyl~adfs~~~~~  349 (420)
T KOG0257|consen  275 VFTCPTPIQEASAAAFALELACLQPGGSYFITELVKEYKEKRDILAKALEELG-----LKVTGPEGAYYLWADFSLAKSW  349 (420)
T ss_pred             ccccCcHHHHHHHHHHhhhhhccCCcchhHHHHHHHHHHHHHHHHHHHHHhcC-----CccccCCCceEEEEeccccccC
Confidence            887788888887777665331          1355667777777777777763     222223345566666651110 


Q ss_pred             ----c----hhHHHHHHHHHHC-CeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          296 ----P----VSAYDICLKMKER-GILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       296 ----~----~~~~~~~~~l~~~-Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                          +    .+...++..|.++ |+.+-|..           .+.+|++  ..-+++.++.+.+.|+
T Consensus       350 ~~~~~~~~~~~d~~~~~wl~~~~Gv~~IP~saF~s~~~~~~~~~~~r~~--~~k~~~~L~~a~e~l~  414 (420)
T KOG0257|consen  350 PFFEEILEKPDDFKFVRWLIKEGGVVVIPPSAFGSREHIKVAERLVRFC--FCKADETLRKAIERLK  414 (420)
T ss_pred             CcchhhccCCCceeeehhhhccCcEEEeCchhcCCchhhHHHHHHHHHH--HHhhHHHHHHHHHHHh
Confidence                0    1233567777654 77776642           2344554  4445556666666655

>PLN02187 rooty/superroot1

Probab=99.96  E-value=3e-27  Score=226.11  Aligned_cols=305  Identities=13%  Similarity=0.118  Sum_probs=194.8

Q ss_pred             CCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           20 NDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .....++++.+++++        ..+++++|+|+++++..++.++     .++|     |+|++.+|+|.++...+...+
T Consensus       107 ~~G~~~lR~aiA~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~pG-----d~Vlv~~P~y~~y~~~~~~~g  176 (462)
T PLN02187        107 GAGILPARRAVADYMNRDLPHKLTPEDIFLTAGCNQGIEIVFESL-----ARPN-----ANILLPRPGFPHYDARAAYSG  176 (462)
T ss_pred             CCChHHHHHHHHHHHHHhcCCCCCcccEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCCccHHHHHHHcC
Confidence            444444555555543        4568999999999999999988     5677     999999999987654443333


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...... ...+. .+..    .|+++++++++   ++++++++.+++||+|.+. +++.+++|.++|++||++||+||+|
T Consensus       177 ~~~~~~-~l~~~-~~~~----~d~~~l~~~~~---~~~~~v~i~nP~NPTG~v~-s~e~l~~i~~~a~~~~i~iI~DE~Y  246 (462)
T PLN02187        177 LEVRKF-DLLPE-KEWE----IDLEGIEAIAD---ENTVAMVVINPNNPCGNVY-SHDHLKKVAETARKLGIMVISDEVY  246 (462)
T ss_pred             CEEEEE-eCccc-cCCc----cCHHHHHHhcC---CCcEEEEEeCCCCCCCCcc-CHHHHHHHHHHHHHCCCEEEEeccc
Confidence            211111 00000 0011    17889988776   4677788877889999877 8999999999999999999999999


Q ss_pred             cCCcccccCc-ccccCCCCCcE---EEeccccc-CCccchhhheeC-H-HH---HhhcCCCCCCCCC--CCCHHHHHHHH
Q 017259          172 SGLARSGRML-ASDWEEVRPDM---VILGKALG-GGVIPVSAVLAD-K-EV---MLCIQPGEHGSTF--GGNPLASAVAI  239 (374)
Q Consensus       172 ~~~~~~g~~~-~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~-~-~~---~~~~~~~~~~~~~--~~~~~~~~aa~  239 (374)
                      .++.+.+..+ ....+.-...+   -||||.++ +|+ |+||++++ + .+   .+.+........+  +.+.+.+.++.
T Consensus       247 ~~l~f~~~~~~s~~~~~~~~~vi~l~SfSK~f~~pGl-RiG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~~  325 (462)
T PLN02187        247 DRTIFGDNPFVSMGKFASIVPVLTLAGISKGWVVPGW-KIGWIALNDPEGVFETTKVLQSIKQNLDVTPDPATIIQAALP  325 (462)
T ss_pred             cccccCCCCceeHHHhccCCcEEEEecchhhcCCccc-eeEEEEecCchhHHHHHHHHHHHHHhccccCCCCHHHHHHHH
Confidence            9865444322 22111111122   38999977 799 99998873 3 22   2233322122222  45788898888


Q ss_pred             HHHHHHhhhcHH----HHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCC-Cc-hhHHHHHHH-HHHCCe
Q 017259          240 ASLDVIRDEKLA----ERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTA-LP-VSAYDICLK-MKERGI  311 (374)
Q Consensus       240 ~al~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~-~~-~~~~~~~~~-l~~~Gi  311 (374)
                      ++++.. .+++.    +.++++++.+.+.|++    ++..... .+..+.|+|+.++... .+ .+..+++.. +.++||
T Consensus       326 ~~L~~~-~~~~l~~~~~~l~~~r~~l~~~L~~----~~~~~~~~~P~gg~fl~~~l~~~~~~~~~~~~~~~~~ll~~~gV  400 (462)
T PLN02187        326 AILEKA-DKNFFAKKNKILKHNVDLVCDRLKD----IPCVVCPKKPESCTYLLTKLELSLMDNIKDDIDFCVKLAREENL  400 (462)
T ss_pred             HHHhcC-cHHHHHHHHHHHHHHHHHHHHHHhh----CCCCcCCCCCCEeEEEEeecChhhCCCCCCHHHHHHHHHhhCCE
Confidence            888631 12333    4444445555555543    3222211 2345688887664210 00 024455554 578899


Q ss_pred             EeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          312 LAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       312 ~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      .+.|+.    .+++||++.  ..++.+++++++|.++++ ...+..
T Consensus       401 ~v~pG~~fg~~~~iRis~~--~~~e~l~~al~rL~~~l~-~~~~~~  443 (462)
T PLN02187        401 VFLPGDALGLKNWMRITIG--VEAHMLEDALERLKGFCT-RHAKKT  443 (462)
T ss_pred             EEECccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH-Hhhhcc
Confidence            999863    689999954  578999999999999997 664443

>COG0156 BioF 7-keto-8-aminopelargonate synthetase and related enzymes [Coenzyme metabolism]

Probab=99.96  E-value=2.7e-27  Score=216.41  Aligned_cols=303  Identities=22%  Similarity=0.284  Sum_probs=228.0

Q ss_pred             hHHHHHHHhc-ccc-Cc---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKL-TLS-SR---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~-~~~-~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++. ... .+   .+..+.+.+||++|++++|.+.+++.+||-.|+..++..+     .++|     |.|+..
T Consensus        60 ~a~~~~~~~~g~g~~gsR~i~G~~~~h~~LE~~lA~f~g~e~al~f~SGy~AN~~~i~~l-----~~~~-----dli~~D  129 (388)
T COG0156          60 EAAKAAIRRYGVGAGGSRLISGTSDLHVELEEELADFLGAEAALLFSSGFVANLGLLSAL-----LKKG-----DLIFSD  129 (388)
T ss_pred             HHHHHHHHHhCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEEcccchhHHHHHHHh-----cCCC-----cEEEEe
Confidence            5677777763 222 22   2778999999999999999999999999999999999999     4445     666655


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC--C-cEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--D-QIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~-~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      .-. |........++.            .....+.++|+++||+.|++..  . +.+.|+++.++++.|.+.|    |++
T Consensus       130 ~ln-HASiidG~rls~------------a~~~~f~HnD~~~Le~~l~~~~~~~~~~~~IvtegVfSMdGdiAp----L~~  192 (388)
T COG0156         130 ELN-HASIIDGIRLSR------------AEVRRFKHNDLDHLEALLEEARENGARRKLIVTEGVFSMDGDIAP----LPE  192 (388)
T ss_pred             chh-hhhHHHHHHhCC------------CcEEEecCCCHHHHHHHHHhhhccCCCceEEEEeccccCCCCcCC----HHH
Confidence            554 665555444443            4567778899999999998732  1 4789999999999999999    999


Q ss_pred             HHHHHHhcCCEEEEecccc-C-CcccccCcccccCCCCC---cE--EEecccccCCccchhhheeCHHHHhhcCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRP---DM--VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS  226 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~~~---d~--~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~  226 (374)
                      |++++++|+.++++||+|+ | +|..|..+. .+.+..+   |+  .||||++|+   -.|++.++..+.+.+.......
T Consensus       193 l~~L~~ky~a~L~VDEAHa~Gv~G~~GrG~~-e~~g~~~~~vdi~~gTlsKAlGs---~Gg~v~g~~~~~d~L~~~ar~~  268 (388)
T COG0156         193 LVELAEKYGALLYVDEAHAVGVLGPNGRGLA-EHFGLEPEEVDIIVGTLGKALGS---SGGYIAGSAALIDYLRNRARPF  268 (388)
T ss_pred             HHHHHHHhCcEEEEEccccccccCCCCccHH-HHhCCCCccceEEEEEchhhhcc---cCceeeCcHHHHHHHHHhCCce
Confidence            9999999999999999998 4 465666543 3344432   33  399999992   2345889999999888755544


Q ss_pred             CC--CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          227 TF--GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       227 ~~--~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      .|  +.+|...+++.++++.+.+. +.+++++++..++++.++...     +.. ......++.+.+.+..   .+.++.
T Consensus       269 ifStalpP~~aaa~~~al~~l~~~~~~r~~L~~~~~~~~~~~~~~~-----~~~-~~s~s~I~pv~~gd~~---~a~~~s  339 (388)
T COG0156         269 IFSTALPPAVAAAALAALRILEEGPERRERLQELAAFFRSLLKALG-----LVL-LPSESPIIPVILGDEE---RALEAS  339 (388)
T ss_pred             eccCCCCHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC-----Ccc-CCCCCCeeeeEeCCHH---HHHHHH
Confidence            44  55777778899999998764 678888888888885555432     211 2334455656565543   688999


Q ss_pred             HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ..|+++||.+.+-       +...+|++++..+|++|++.++++|.++
T Consensus       340 ~~l~~~Gi~v~~i~~PTVp~gtarlRi~lta~ht~~~I~~l~~~l~~~  387 (388)
T COG0156         340 RALLEEGIYVSAIRPPTVPKGTARLRITLTAAHTEEDIDRLAEALSEV  387 (388)
T ss_pred             HHHHHCCeeEeeecCCCCCCCcceEEEEecCCCCHHHHHHHHHHHHhh
Confidence            9999999998642       3478999999999999999999998764

>PRK12414 putative aminotransferase; Provisional

Probab=99.96  E-value=1.6e-27  Score=224.05  Aligned_cols=294  Identities=16%  Similarity=0.179  Sum_probs=198.3

Q ss_pred             CCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++++.+|.     +++++|+|+++++..++..+     ..+|     |+|++..|+|..+.......+.
T Consensus        67 G~~~lr~~ia~~l~~~~g~~~~~~~~i~it~g~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~  136 (384)
T PRK12414         67 GIAALREALAEKTERLYGARYDPASEVTVIASASEGLYAAISAL-----VHPG-----DEVIYFEPSFDSYAPIVRLQGA  136 (384)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEECChHHHHHHHHHHh-----cCCC-----CEEEEeCCCccchHHHHHHcCC
Confidence            3445666777777776654     47999999999999999887     5667     9999999999765544443322


Q ss_pred             CccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .....    +...    -.+ -|++.++++++   ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|
T Consensus       137 ~~~~v----~~~~----~~~~~d~~~l~~~l~---~~~~~v~i~~p~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~Y  204 (384)
T PRK12414        137 TPVAI----KLSP----EDFRVNWDEVAAAIT---PRTRMIIVNTPHNPSATVF-SAADLARLAQLTRNTDIVILSDEVY  204 (384)
T ss_pred             EEEEE----ecCc----cccccCHHHHHhhcC---cccEEEEEcCCCCCCCcCC-CHHHHHHHHHHHHHCCeEEEEhhhh
Confidence            11110    1100    011 27888888886   4788899988899999877 7999999999999999999999999


Q ss_pred             cCCcccccCc-cc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          172 SGLARSGRML-AS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       172 ~~~~~~g~~~-~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ..+.+.+... .. ...+....   +.||||.++ +|+ |+||+++++++++.+........++.+.+++.++..+++.-
T Consensus       205 ~~~~~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~pGl-RiG~~v~~~~l~~~l~~~~~~~~~~~s~~~q~a~~~~l~~~  283 (384)
T PRK12414        205 EHVVFDGARHHSMARHRELAERSVIVSSFGKSYHVTGW-RVGYCLAPAELMDEIRKVHQFMVFSADTPMQHAFAEALAEP  283 (384)
T ss_pred             hhccCCCCCccCcccCcCccCcEEEEecccccccCccc-eEEEEecCHHHHHHHHHHHhheecCCCcHHHHHHHHHhcCC
Confidence            9765444221 11 11122222   238999997 899 99999999998888876544456778888988887777531


Q ss_pred             hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHH-HHHHHCCeEeccCC-----
Q 017259          246 RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDIC-LKMKERGILAKPTH-----  317 (374)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~v~~~~-----  317 (374)
                      .. ....+.++++++.+.+.|++.     ++. ..++ .+.++|+.++... .....+++ +.|.++||.+.|+.     
T Consensus       284 ~~~~~~~~~~~~~r~~l~~~L~~~-----g~~-~~~~~gg~~~~~~~~~~~-~~~~~~~~~~~l~~~gV~v~pg~~f~~~  356 (384)
T PRK12414        284 ASYLGLGAFYQRKRDLLARELAGS-----RFE-LLPSEGSFFMLARFRHFS-DESDSDFVLRLIRDARVATIPLSAFYTD  356 (384)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHhC-----CCe-ecCCCcceEEEEcccccC-CCCHHHHHHHHHHhCCEEEecchhhcCC
Confidence            10 123445555555555555543     221 1223 3456665664310 00244566 55667899998852     


Q ss_pred             ---CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          318 ---DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       318 ---~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                         .+++||+++  .+++++++++++|.+
T Consensus       357 ~~~~~~iRis~~--~~~~~~~~~~~rl~~  383 (384)
T PRK12414        357 GTDTGLIRLSFS--KDDATLVEGARRLCS  383 (384)
T ss_pred             CCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence               468999955  478999999998864

>PRK09082 methionine aminotransferase; Validated

Probab=99.96  E-value=2.3e-27  Score=223.30  Aligned_cols=294  Identities=14%  Similarity=0.149  Sum_probs=201.6

Q ss_pred             CCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++.+.++.     +++++|+|+++|+..++..+     ..+|     |+|++.+|+|.++.......+.
T Consensus        68 G~~~lr~~~a~~l~~~~~~~~~~~~~i~~t~G~~~al~~~~~~~-----~~~g-----d~Vli~~p~y~~~~~~~~~~g~  137 (386)
T PRK09082         68 GVAALREAIAAKTARLYGRQYDADSEITVTAGATEALFAAILAL-----VRPG-----DEVIVFDPSYDSYAPAIELAGG  137 (386)
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCHHHHHHHHHHHH-----cCCC-----CEEEEeCCCchhhHHHHHHcCC
Confidence            3344566777777776553     26999999999999999887     4567     9999999999776555444332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +.  +.... ..|++++++.++   ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|.
T Consensus       138 ~~~~~----~~--~~~~~-~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~li~De~y~  206 (386)
T PRK09082        138 RAVRV----AL--QPPDF-RVDWQRFAAAIS---PRTRLIILNTPHNPSGTVW-SAADMRALWQLIAGTDIYVLSDEVYE  206 (386)
T ss_pred             EEEEE----ec--Ccccc-cCCHHHHHHhcC---ccceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHCCEEEEEehhhh
Confidence            21111    10  00000 027888988886   4688888888889999877 79999999999999999999999998


Q ss_pred             CCcccccC-ccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          173 GLARSGRM-LAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       173 ~~~~~g~~-~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      ++.+.+.. ... ...+....   +.||||.++ +|+ |+||+++++++++.++.......++.+.+++.++.+.++...
T Consensus       207 ~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~iv~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  285 (386)
T PRK09082        207 HIVFDGAGHASVLRHPELRERAFVVSSFGKTYHVTGW-KVGYCVAPAALSAEFRKVHQYNTFTVNTPAQLALADYLRAEP  285 (386)
T ss_pred             hhccCCCCCCChhhCcCccCcEEEEeechhhccchhh-hhhhhhCCHHHHHHHHHHHhhhcCCCChHHHHHHHHHHhCCh
Confidence            76443321 111 12222223   238999997 799 999999999998888765445567788888887776664211


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc--CCCchhHHHHHHHHH-HCCeEeccCC----
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSAYDICLKMK-ERGILAKPTH----  317 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~l~-~~Gi~v~~~~----  317 (374)
                      .  +++.+.++++.+.+.+.|+..     ++.......+.++|+.+++  ..   +..++++.|. ++||.+.|+.    
T Consensus       286 ~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~~l~~~~~v~v~pg~~f~~  357 (386)
T PRK09082        286 EHYLELPAFYQAKRDRFRAALANS-----RFKLLPCEGTYFQLVDYSAISDL---DDVEFCQWLTREHGVAAIPLSVFYA  357 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCeeEEEEEeccccCCC---CHHHHHHHHHHhCCEEEeCcHHhCC
Confidence            1  123344455555555555542     2221123346677878763  22   5788999874 6799998752    


Q ss_pred             ----CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          318 ----DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                          .+++||+++  .+++++++++++|++
T Consensus       358 ~~~~~~~~Ri~~~--~~~~~l~~~~~rl~~  385 (386)
T PRK09082        358 DPFPHRLVRLCFA--KQEETLDAAAERLCQ  385 (386)
T ss_pred             CCCCCCEEEEEec--CCHHHHHHHHHHHhh
Confidence                478999954  578899999998864

>PRK08636 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.9e-27  Score=222.87  Aligned_cols=306  Identities=14%  Similarity=0.122  Sum_probs=201.8

Q ss_pred             CCCCcHHHHHHHHhccc----CCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMF----GYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +...+++.+++++.+.+    ..+ ++++|+|+++++..++.++     ..+|     |.|++.+|+|.++...+...+.
T Consensus        72 G~~~lR~~ia~~l~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~  141 (403)
T PRK08636         72 GIYKLRLAICNWYKRKYNVDLDPETEVVATMGSKEGYVHLVQAI-----TNPG-----DVAIVPDPAYPIHSQAFILAGG  141 (403)
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCCeEEECCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHhcCC
Confidence            33345666777765543    345 6999999999999999988     5667     9999999999887655554443


Q ss_pred             CccccccCCCCCCCceeccCCCHH----HHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDIT----ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~----~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      .....    +...+-. .. -|++    .++++++++.++++++++++++||+|.+. |.+.+++|.++|++|+++||+|
T Consensus       142 ~~~~v----~~~~~~~-~~-~d~~~l~~~l~~~~~~~~~~~~~i~~~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~II~D  214 (403)
T PRK08636        142 NVHKM----PLEYNED-FE-LDEDQFFENLEKALRESSPKPKYVVVNFPHNPTTATV-EKSFYERLVALAKKERFYIISD  214 (403)
T ss_pred             EEEEE----ecccccc-Cc-cChhhhhhHHHHHHhhccCCceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEe
Confidence            21111    0000000 00 1444    45666766556788999988899999887 8999999999999999999999


Q ss_pred             ccccCCcccccC-cccccCCCCCc----EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRM-LASDWEEVRPD----MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASL  242 (374)
Q Consensus       169 ea~~~~~~~g~~-~~~~~~~~~~d----~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al  242 (374)
                      |+|.++.+.+.. .........++    +.||||.++ +|+ |+||+++++++++.+........++.+.+.+.++..++
T Consensus       215 e~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~iv~~~~li~~~~~~~~~~~~~~~~~~q~~~~~~~  293 (403)
T PRK08636        215 IAYADITFDGYKTPSILEVEGAKDVAVESYTLSKSYNMAGW-RVGFVVGNKKLVGALKKIKSWLDYGMFTPIQVAATIAL  293 (403)
T ss_pred             ccchhhccCCCCCCChhcCCCccccEEEEEecccccCCccc-eeeeeeCCHHHHHHHHHHHHHhcccCChHHHHHHHHHH
Confidence            999987544422 11111111112    237999996 899 99999999999888775433334566677777666554


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC----
Q 017259          243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----  317 (374)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----  317 (374)
                      +.  .+++.+++++.....++.+.+..... ++....+..|.++|+.+++.....+..++++.++ +.||.+.|+.    
T Consensus       294 ~~--~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~p~~g~~~~~~l~~~~~~~~~~~l~~~ll~~~gV~v~pg~~f~~  370 (403)
T PRK08636        294 DG--DQSCVEEIRETYRKRRDVLIESFANA-GWELQKPRASMFVWAKIPEPARHLGSLEFSKQLLTEAKVAVSPGIGFGE  370 (403)
T ss_pred             hC--cHHHHHHHHHHHHHHHHHHHHHHHHC-CCcccCCCcceEEEEECCCccCCCCHHHHHHHHHHhCCEEEecchhhCc
Confidence            31  12334333333333333333333222 2211223468888988875321113578888766 6799998862    


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+++||++.  .+++++++++++|+++++
T Consensus       371 ~~~~~iRi~~~--~~~~~l~~~~~rl~~~l~  399 (403)
T PRK08636        371 YGDEYVRIALI--ENENRIRQAARNIKKFLK  399 (403)
T ss_pred             CCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence              479999964  688999999999999987

>PRK09148 aminotransferase; Validated

Probab=99.96  E-value=2.4e-27  Score=224.26  Aligned_cols=296  Identities=12%  Similarity=0.136  Sum_probs=200.1

Q ss_pred             CcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++.+.+.+|    .+ ++++|+|+++++..++..+     ..+|     |.|++.+|+|.++...+...+....
T Consensus        72 ~lr~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~Vl~~~P~y~~~~~~~~~~g~~v~  141 (405)
T PRK09148         72 GLRRAQAAYYARRFGVKLNPDTQVVATLGSKEGFANMAQAI-----TAPG-----DVILCPNPSYPIHAFGFIMAGGVIR  141 (405)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCCcccHHHHHhcCCEEE
Confidence            444455555544323    45 7999999999999999888     5567     9999999999887555443322111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+.     .+++++++.++.+.++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.
T Consensus       142 ~v----~~~~~~-----~~~~~l~~~~~~~~~~~~~v~l~~P~NPtG~~~-s~~~l~~l~~~a~~~~~~ii~De~Y~~~~  211 (405)
T PRK09148        142 SV----PAEPDE-----EFFPALERAVRHSIPKPIALIVNYPSNPTAYVA-DLDFYKDVVAFAKKHDIIILSDLAYSEIY  211 (405)
T ss_pred             EE----eCCCCC-----CCccCHHHHHhhccccceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccchhhh
Confidence            00    110100     124456666655445788898888899999887 89999999999999999999999999764


Q ss_pred             ccccCcc-cccC-CCC---CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          176 RSGRMLA-SDWE-EVR---PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       176 ~~g~~~~-~~~~-~~~---~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      +.+..+. .... +..   ..+-||||.++ +|+ |+||+++++++++.+.......+++.+.+++.++..+++.  .++
T Consensus       212 ~~~~~~~s~~~~~~~~~~~i~~~SfSK~~~~pGl-R~G~~v~~~~~i~~l~~~~~~~~~~~~~~~q~~~~~~L~~--~~~  288 (405)
T PRK09148        212 FDGNPPPSVLQVPGAKDVTVEFTSMSKTFSMAGW-RMGFAVGNERLIAALTRVKSYLDYGAFTPIQVAATAALNG--PQD  288 (405)
T ss_pred             cCCCCCCChhhCCCccCcEEEEeccccccCCcch-heeeeeCCHHHHHHHHHHHHHhccCCChHHHHHHHHHHhC--cHH
Confidence            4332211 1111 111   12348999999 899 9999999999988887544444567788888888877752  123


Q ss_pred             H----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------C
Q 017259          250 L----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------D  318 (374)
Q Consensus       250 ~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~  318 (374)
                      +    ++.++++.+.+.+.|+..     ++....+..|.++|+.++.........++++.|+ ++||.+.|+.      .
T Consensus       289 ~~~~~~~~~~~~r~~l~~~L~~~-----~~~~~~p~~g~f~~~~l~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~  363 (405)
T PRK09148        289 CIAEMRELYKKRRDVLVESFGRA-----GWDIPPPAASMFAWAPIPEAFRHLGSLEFSKLLVEKADVAVAPGVGFGEHGD  363 (405)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc-----CCccCCCCeeEEEEEECCCccCCCCHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence            3    344444455554444432     2221223457788888865321113578888876 6899999852      4


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++||++.  .+.+++++++++|.++++
T Consensus       364 ~~~Ri~~~--~~~~~l~~al~~l~~~l~  389 (405)
T PRK09148        364 GYVRIALV--ENEQRIRQAARNIKRFLS  389 (405)
T ss_pred             CeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            79999954  678999999999998887

>TIGR01822 2am3keto_CoA 2-amino-3-ketobutyrate coenzyme A ligase

Probab=99.96  E-value=3.5e-27  Score=222.98  Aligned_cols=308  Identities=19%  Similarity=0.228  Sum_probs=215.5

Q ss_pred             hHHHHHHHhc-cc-cCcC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKL-TL-SSRA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~-~~-~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+. .. ..+.   +..+.+.++++.+++++|.+++++++||++|+..++..+     .++|     |+|++.
T Consensus        59 ~~~~~~~~~~~~~~~~s~~~~G~~~~~~~le~~ia~~~g~~~~ii~~~~~~a~~~~~~~l-----~~~g-----d~vi~~  128 (393)
T TIGR01822        59 QAAKDALDEHGFGMSSVRFICGTQDIHKELEAKIAAFLGTEDTILYASCFDANGGLFETL-----LGAE-----DAIISD  128 (393)
T ss_pred             HHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHh-----CCCC-----CEEEEe
Confidence            4566666652 22 2233   335567889999999999998988999999999888776     5677     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ++.|++...........             ...+...|++++++.+++.   +.++++++++++++++|.+.+    +++
T Consensus       129 ~~~~~s~~~~~~~~~~~-------------~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~tG~~~~----l~~  191 (393)
T TIGR01822       129 ALNHASIIDGVRLCKAK-------------RYRYANNDMADLEAQLKEARAAGARHRLIATDGVFSMDGVIAP----LDE  191 (393)
T ss_pred             ccccHHHHHHHHhcCCc-------------eEEeCCCCHHHHHHHHHhhhhcCCCceEEEEeCCccCCCCcCC----HHH
Confidence            99876654433222211             1122346899999998852   227889999989999999988    999


Q ss_pred             HHHHHHhcCCEEEEecccc-CC-cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      |.++|++||++||+||+|+ |+ +..|.. .....+.  .+|++  |+||+++ |+ ++||+++++++.+.+........
T Consensus       192 i~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~di~~~s~sK~l~-g~-r~G~~~~~~~~~~~l~~~~~~~~  268 (393)
T TIGR01822       192 ICDLADKYDALVMVDECHATGFLGPTGRG-SHELCGVMGRVDIITGTLGKALG-GA-SGGFTTARKEVVELLRQRSRPYL  268 (393)
T ss_pred             HHHHHHHcCCEEEEECCccccCcCCCCCc-hHHhcCCCCCCeEEEEEChHHhh-CC-CcEEEEeCHHHHHHHHHhCccce
Confidence            9999999999999999996 32 222221 1112222  34555  8899987 46 88999999988887765322222


Q ss_pred             C--CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          228 F--GGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       228 ~--~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +  +.++..++++.++++.+.. ++..++++++.+++.+.|++....   ..   .+.+.++.+.+++..   ...++++
T Consensus       269 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~---~~~~~~~~i~~~~~~---~~~~l~~  339 (393)
T TIGR01822       269 FSNSLPPAVVGASIKVLEMLEASNELRDRLWANTRYFRERMEAAGFD---IK---PADHPIIPVMLYDAV---LAQRFAR  339 (393)
T ss_pred             ecCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC---CC---CCCCCEEEEEeCCHH---HHHHHHH
Confidence            3  3355556677778876643 356788888888888888764211   11   112345555444322   5778999


Q ss_pred             HHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|.++||.+...       +...+|++++..++++|+++++++|+++++ ++
T Consensus       340 ~L~~~gI~v~~~~~~~~~~~~~~iRis~~~~~t~edi~~~~~~l~~~~~-~~  390 (393)
T TIGR01822       340 RLLEEGIYVTGFFYPVVPKGQARIRVQISAAHTEEQLDRAVEAFTRIGR-EL  390 (393)
T ss_pred             HHHHCCeeEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            999999988631       235799999999999999999999999887 44

This model represents a narrowly defined clade of animal and bacterial (almost exclusively Proteobacterial) 2-amino-3-ketobutyrate--CoA ligase. This enzyme can act in threonine catabolism. The closest homolog from Bacillus subtilis, and sequences like it, may be functionally equivalent but were not included in the model because of difficulty in finding reports of function.

>PRK08361 aspartate aminotransferase; Provisional

Probab=99.96  E-value=3.7e-27  Score=222.33  Aligned_cols=301  Identities=16%  Similarity=0.139  Sum_probs=197.3

Q ss_pred             CCcHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           20 NDKFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .....++++.+++++    |    .+++++|+|+++++..++..+     ..+|     ++|++.+|+|.+....+...+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----~~Vlv~~p~y~~~~~~~~~~g  138 (391)
T PRK08361         69 NAGIPELREAIAEYYKKFYGVDVDVDNVIVTAGAYEATYLAFESL-----LEEG-----DEVIIPDPAFVCYVEDAKIAE  138 (391)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCCcccHHHHHHcC
Confidence            334455555555543    3    468999999999999998877     5567     999999999977654433322


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .... ..   +...+...  ..|++++++.++   ++++++++++++|++|.+. +.+.+++|.++|+++++++|+||+|
T Consensus       139 ~~~~-~v---~~~~~~~~--~~d~~~l~~~i~---~~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y  208 (391)
T PRK08361        139 AKPI-RI---PLREENEF--QPDPDELLELIT---KRTRMIVINYPNNPTGATL-DKEVAKAIADIAEDYNIYILSDEPY  208 (391)
T ss_pred             CEEE-EE---ecCCccCC--CCCHHHHHHhcc---cccEEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEEccc
Confidence            1111 10   11010000  027889988887   4678888888889999877 7899999999999999999999999


Q ss_pred             cCCcccccC-cccccCCCCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          172 SGLARSGRM-LASDWEEVRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       172 ~~~~~~g~~-~~~~~~~~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .++.+.+.. ...........  +.||||.++ +|+ |+||+++++++++.+........++.+.+.+.++..+++....
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~  287 (391)
T PRK08361        209 EHFLYEGAKHYPMIKYAPDNTILANSFSKTFAMTGW-RLGFVIAPEQVIKDMIKLHAYIIGNVASFVQIAGIEALRSKES  287 (391)
T ss_pred             ccceeCCCCCCCHhhcCCCCEEEEecCchhcCCcHh-hhhhhccCHHHHHHHHHHHhhhccCCChHHHHHHHHHhcCCcc
Confidence            976443321 11111111112  238999998 799 9999999988888775433334456677888888777753211


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHH-CCeEeccCC------CC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKE-RGILAKPTH------DT  319 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~  319 (374)
                      +++.++.++..+..++.+.+....++++....+..+.++|+.++. ..   +..++++.|++ +||.+.|+.      ++
T Consensus       288 ~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~~~p~g~~~~~~~l~~~~~---~~~~l~~~l~~~~gv~v~pg~~f~~~~~~  364 (391)
T PRK08361        288 WKAVEEMRKEYNERRKLVLKRLKEMPHIKVFEPKGAFYVFANIDETGM---SSEDFAEWLLEKARVVVIPGTAFGKAGEG  364 (391)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhCCCCeecCCCEEEEEEEECCCCCC---CHHHHHHHHHHhCCEEEcCchhhCCCCCC
Confidence            123334333333333333333333333221122335677777764 22   57789998875 799998852      47


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||+++  .+++++++++++|+++++
T Consensus       365 ~iRi~~~--~~~~~l~~al~~l~~~l~  389 (391)
T PRK08361        365 YIRISYA--TSKEKLIEAMERMEKALE  389 (391)
T ss_pred             EEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            9999955  578899999999999887

>PRK06425 histidinol-phosphate aminotransferase; Validated

Probab=99.96  E-value=1.6e-27  Score=219.80  Aligned_cols=283  Identities=13%  Similarity=0.073  Sum_probs=191.3

Q ss_pred             CCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           17 AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .|+.+.+.+|.+.++++++.  ++|++|+|+++++..++.++      .+      +++++.+|+|..+...+...+.. 
T Consensus        36 ~Yp~~~~~~lr~~ia~~~~~~~~~I~it~Gs~~~l~~~~~~~------~~------~~vv~~~P~y~~y~~~~~~~G~~-  102 (332)
T PRK06425         36 IYPEISYTDIEDQIKIYTQGLKIKVLIGPGLTHFIYRLLSYI------NV------GNIIIVEPNFNEYKGYAFTHGIR-  102 (332)
T ss_pred             cCcCcCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh------CC------CcEEEeCCChHHHHHHHHHcCCe-
Confidence            46777899999999998854  57999999999999888643      12      34666699998776666555432 


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                                  +..++.++.+...+.++.  .+++++++++++||||.+. +.+.+++|.++|++||++||+||+|.+|
T Consensus       103 ------------v~~vp~~~~~~~~~~l~~--~~~k~v~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~DE~Y~~~  167 (332)
T PRK06425        103 ------------ISALPFNLINNNPEILNN--YNFDLIFIVSPDNPLGNLI-SRDSLLTISEICRKKGALLFIDEAFIDF  167 (332)
T ss_pred             ------------EEEEeCCcccCcHHHHhh--cCCCEEEEeCCCCCcCCcc-CHHHHHHHHHHHHHcCCEEEEecchhcc
Confidence                        222222210000223332  2677888888999999887 8999999999999999999999999988


Q ss_pred             cccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH-hhhc
Q 017259          175 ARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI-RDEK  249 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~-~~~~  249 (374)
                      ...+...........++++   ||||.++ +|+ |+||+++++++++.+...  ..++..+.+++.++. ..+.- ..+.
T Consensus       168 ~~~~~~~~~~~~~~~~~vi~~~SfSK~~~l~Gl-RiGy~v~~~~li~~l~~~--~~~~~~~~~~~~~l~-~~~~~~~~~~  243 (332)
T PRK06425        168 VPNRAEEDVLLNRSYGNVIIGRSLTKILGIPSL-RIGYIATDDYNMKISRKI--TEPWSVCDPAIDFIR-SIDLDYVAKH  243 (332)
T ss_pred             ccccchhHHHHhccCCCEEEEeecHHhcCCchh-hheeeecCHHHHHHHHHc--CCCCccCHHHHHHHH-HhhhHHHHHH
Confidence            5433211111112223333   9999999 899 999999999998888753  233444444433222 11110 0013


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEE
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRL  323 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi  323 (374)
                      ..+.++++++++.+.|++.     ++....++.|+|+|+.++      +..++++.|+++||.++++.      .+++||
T Consensus       244 ~~~~~~~~r~~l~~~L~~~-----g~~~~~~~~g~f~~~~~~------~~~~~~~~l~~~gi~v~~~~~f~~~~~~~iRi  312 (332)
T PRK06425        244 SLDIMENERSYLINNLEAM-----GFRAAGDPSANFITFMIP------DAHDFYSYLLKNGILVRLLDDYECLGEQYIRI  312 (332)
T ss_pred             HHHHHHHHHHHHHHHHHHC-----CCEECCCCCceEEEEEcC------CHHHHHHHHHHCCeEEEECCCCCCCCCCEEEE
Confidence            3455555666666666543     222112346788888775      35789999999999998862      469999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 017259          324 TPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +   ..+.+++++++++|++++
T Consensus       313 s---~~~~~~~~~l~~al~~~~  331 (332)
T PRK06425        313 A---IRRRSFNIKLVNALRNFL  331 (332)
T ss_pred             E---eCCHHHHHHHHHHHHHHh
Confidence            9   557889999999998876

>PRK06290 aspartate aminotransferase; Provisional

Probab=99.96  E-value=4.3e-27  Score=222.20  Aligned_cols=302  Identities=15%  Similarity=0.167  Sum_probs=199.2

Q ss_pred             CcHHHHHHHHhcccC-----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           21 DKFPVFAERLTSMFG-----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~-----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .+++.+++++.+.+|     .+ ++++|+|+++++..++.++     ..+|     |.|++..|+|.++...+...+...
T Consensus        85 ~lr~aia~~~~~~~g~~~~~~~~~I~it~Gs~~al~~~~~~~-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~v  154 (410)
T PRK06290         85 EFKEAAARYMEKVFGVKDIDPVTEVIHSIGSKPALAMLPSCF-----INPG-----DVTLMTVPGYPVTGTHTKYYGGEV  154 (410)
T ss_pred             HHHHHHHHHHHHHcCCCcCCCcceEEEccCHHHHHHHHHHHh-----CCCC-----CEEEEeCCCCccHHHHHHHcCCEE
Confidence            334445555444333     34 6999999999999998887     5677     999999999988765554443321


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+...  ..|++++++++.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++
T Consensus       155 ~~v----~~~~~~~~--~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~v~-s~e~l~~l~~la~~~~~~iI~DEaY~~~  224 (410)
T PRK06290        155 YNL----PLLEENNF--LPDLDSIPKDIK---EKAKLLYLNYPNNPTGAVA-TKEFYEEVVDFAKENNIIVVQDAAYAAL  224 (410)
T ss_pred             EEE----ecCCCcCC--cCCHHHHHHhhc---ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEecchhhc
Confidence            111    11111011  127888888775   4688999988889999888 8999999999999999999999999976


Q ss_pred             cccccCccc-ccCCCC---CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hh
Q 017259          175 ARSGRMLAS-DWEEVR---PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DE  248 (374)
Q Consensus       175 ~~~g~~~~~-~~~~~~---~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~  248 (374)
                      .+.+....+ ...+..   ..+.||||.++ +|+ |+||+++++++++.+.........+.+.+++.++..+++... .+
T Consensus       225 ~~~~~~~s~~~~~~~~~~~I~i~SfSK~~g~~Gl-RiG~ii~~~~l~~~l~~~~~~~~~~~~~~~q~aa~~~l~~~~~~~  303 (410)
T PRK06290        225 TFDGKPLSFLSVPGAKEVGVEIHSLSKAYNMTGW-RLAFVVGNELIVKAFATVKDNNDSGQFIAIQKAGIYALDHPEITE  303 (410)
T ss_pred             eeCCCCcChhcCCCccccEEEEeechhhcCCchh-heEeEEeCHHHHHHHHHHHhccccCCcHHHHHHHHHHhhCcHHHH
Confidence            443322121 111111   12349999997 799 999999999988888754434444556677777777775311 01


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----chhHHHHHHHHHHCC-eEeccCC--CCEE
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAYDICLKMKERG-ILAKPTH--DTIV  321 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~~~~~~l~~~G-i~v~~~~--~~~l  321 (374)
                      +..++++++.+.+.+.|++.     ++.......+.++|+.+++...    ..+..+++++|+++| +.+.|+.  ++++
T Consensus       304 ~~~~~~~~~~~~l~~~L~~~-----g~~~~~p~g~f~l~v~lp~~~~~~~~~~~~~~~~~~Ll~~~~v~~~p~~~~~~~l  378 (410)
T PRK06290        304 KIREKYSRRLDKLVKILNEV-----GFKAEMPGGTFYLYVKAPKGTKSGIKFENAEEFSQYLIKEKLISTVPWDDAGHFL  378 (410)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-----CCeecCCCeeeEEEEECCCccccCCCCCCHHHHHHHHHHhCCEEEECCccccCeE
Confidence            33444555555555555443     2221112235566777764310    015678999999886 4555542  4699


Q ss_pred             EEecCC-CCCHHHHHHHHHHHHHHHhccC
Q 017259          322 RLTPPL-SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       322 Ri~~~~-~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||+++. ..++++.++++++|++.+. ++
T Consensus       379 Ri~~~~~~~~~~~~~~~~~~l~~~~~-~~  406 (410)
T PRK06290        379 RFSVTFEAKDEEEEDRILEEIKRRLS-DV  406 (410)
T ss_pred             EEEEEcccccccchhHHHHHHHHHHh-hc
Confidence            999542 3488899999999999987 54

>PRK07505 hypothetical protein; Provisional

Probab=99.96  E-value=3e-27  Score=223.64  Aligned_cols=309  Identities=18%  Similarity=0.215  Sum_probs=206.4

Q ss_pred             hHHHHHHHhcc---ccCc--CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLT---LSSR--AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~---~~~~--~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++..   ..++  .+..+..++++++|+++++. +.++++||++|++.+++++.... ..+    ++..++++
T Consensus        67 ~A~~~~l~~~g~~~~~~~~~~~~~~~~~~l~~~la~~~~~-~~~~~~sG~~a~~~ai~~~~~~~-~~~----~~~~vi~~  140 (402)
T PRK07505         67 EGAVDALKRTGSLHLSSSRTRVRSQILKDLEEALSELFGA-SVLTFTSCSAAHLGILPLLASGH-LTG----GVPPHMVF  140 (402)
T ss_pred             HHHHHHHHHhCCCCCCccchhhhhHHHHHHHHHHHHHhCC-CEEEECChHHHHHHHHHHHHhcc-cCC----CCCCEEEE
Confidence            67888887643   2222  14467889999999999887 77777789999999999875321 111    23568889


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      +.+||+.......      ....    ..++..++++|+++++++++.+  ...+++++|+ +++|.+.+    +++|.+
T Consensus       141 ~~~~H~s~~~~~~------~~~~----~~~v~~~~~~d~~~l~~~~~~~--~~~~vl~~p~-~~~G~~~~----~~~i~~  203 (402)
T PRK07505        141 DKNAHASLNILKG------ICAD----ETEVETIDHNDLDALEDICKTN--KTVAYVADGV-YSMGGIAP----VKELLR  203 (402)
T ss_pred             chhhhHhHHhhhh------hhhc----CCeEEEeCCCCHHHHHHHHhcC--CCEEEEEecc-cccCCcCC----HHHHHH
Confidence            9999984322111      1110    1356677888999999988632  3455555554 56787887    999999


Q ss_pred             HHHhcCCEEEEecccc--CCcccccCcccccCCC-CCcE-E---EecccccCCccchhhhe-eCHHHHhhcCCCCCCCCC
Q 017259          157 LCSKYNILMIADEIQS--GLARSGRMLASDWEEV-RPDM-V---ILGKALGGGVIPVSAVL-ADKEVMLCIQPGEHGSTF  228 (374)
Q Consensus       157 l~~~~~i~li~Dea~~--~~~~~g~~~~~~~~~~-~~d~-~---s~sK~~~~G~~~~G~~~-~~~~~~~~~~~~~~~~~~  228 (374)
                      +|++||++||+||+|+  ++++.|..+....++. .+|. +   |+||+++++   +|+++ .++++.+.+.......+|
T Consensus       204 l~~~~~~~li~DEa~~~~~~g~~g~~~~~~~~~~~~~d~~i~~~s~sK~~~~~---Gg~~~~~~~~~~~~~~~~~~~~t~  280 (402)
T PRK07505        204 LQEKYGLFLYIDDAHGLSIYGKNGEGYVRSELDYRLNERTIIAASLGKAFGAS---GGVIMLGDAEQIELILRYAGPLAF  280 (402)
T ss_pred             HHHHcCCEEEEECcccccCcCCCCCchHHHHcCCCCCCCeEEEEechhhhhcc---CeEEEeCCHHHHHHHHHhCCCcee
Confidence            9999999999999994  5777776555555554 4553 3   899998843   25555 467888877665555566


Q ss_pred             CC--CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEeccCCCchhHHHHHHH
Q 017259          229 GG--NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       229 ~~--~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~  305 (374)
                      ++  ++++++++.++++.+.++.+.+..    +++++.++.+....   ....++.+.++ ++.+++..   ...++.+.
T Consensus       281 ~~~~~~~a~aa~~a~l~~~~~~~~~~~~----~~l~~~~~~~~~~~---~~~~~g~~~~i~~~~~~~~~---~~~~~~~~  350 (402)
T PRK07505        281 SQSLNVAALGAILASAEIHLSEELDQLQ----QKLQNNIALFDSLI---PTEQSGSFLPIRLIYIGDED---TAIKAAKQ  350 (402)
T ss_pred             CCCCCHHHHHHHHHHHHHHhccCcHHHH----HHHHHHHHHHHHHH---HhcCCCCCCCEEEEEeCCHH---HHHHHHHH
Confidence            44  567888888888865544333222    22333322221110   01123333333 22233211   46789999


Q ss_pred             HHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++||++++.       +.+++|+++++.++++|+++++++|+++++
T Consensus       351 l~~~Gi~v~~~~~p~~~~~~~~lRi~~~~~~t~eei~~~~~~l~~~l~  398 (402)
T PRK07505        351 LLDRGFYTSPVFFPVVAKGRAGLRIMFRASHTNDEIKRLCSLLKEILD  398 (402)
T ss_pred             HHHCCCeEeeecCCCCCCCCceEEEecCccCCHHHHHHHHHHHHHHHH
Confidence            99999999864       236999999999999999999999999886

>PRK09147 succinyldiaminopimelate transaminase; Provisional

Probab=99.96  E-value=4.9e-27  Score=221.88  Aligned_cols=292  Identities=14%  Similarity=0.103  Sum_probs=197.6

Q ss_pred             CCCCcHHHHHHHHhcccC-----CC-eEEecCChHHHHHHHHHHHHHcccccc---cCCCCccEEEEeccCCCCcccccc
Q 017259           18 FYNDKFPVFAERLTSMFG-----YD-MVLPMNTGAEGVETALKLARKWGYVKK---KFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~-----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~---G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +..++++.+++++.+.+|     .+ ++++|+|+++++..+++++     ..+   |     |.|++..|+|.++...+.
T Consensus        66 G~~~lr~~ia~~~~~~~g~~~~~~~~~i~it~G~~~al~~~~~~l-----~~~~~~g-----d~vlv~~P~y~~~~~~~~  135 (396)
T PRK09147         66 GLPALREAIAAWLERRYGLPALDPATQVLPVNGSREALFAFAQTV-----IDRDGPG-----PLVVCPNPFYQIYEGAAL  135 (396)
T ss_pred             CCHHHHHHHHHHHHHHhCCCcCCccceEEECCChHHHHHHHHHHH-----cCCCCCC-----CEEEEcCCCccchHHHHH
Confidence            334456666666655444     23 7999999999999999988     445   5     899999999987765544


Q ss_pred             cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      ..+......    |...+..+  ..|++++++.+.   ++++++++++++||+|.+. +++.+++|.++|++||++||+|
T Consensus       136 ~~g~~~~~v----p~~~~~~~--~~d~~~l~~~~~---~~~k~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~D  205 (396)
T PRK09147        136 LAGAEPYFL----NCDPANNF--APDFDAVPAEVW---ARTQLLFVCSPGNPTGAVL-PLDDWKKLFALSDRYGFVIASD  205 (396)
T ss_pred             hcCCEEEEe----ccCccccC--ccCHHHHHHHHh---hccEEEEEcCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEee
Confidence            433221111    11110000  026888887775   3688888888899999877 8999999999999999999999


Q ss_pred             ccccCCccccc--Ccc-cc---cCCC--CCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259          169 EIQSGLARSGR--MLA-SD---WEEV--RPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       169 ea~~~~~~~g~--~~~-~~---~~~~--~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (374)
                      |+|.++.+.+.  ... ..   ..+.  .+.+   .||||.++ +|+ |+||+++++++++.+.......+++.+.+.+.
T Consensus       206 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~Gl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~  284 (396)
T PRK09147        206 ECYSEIYFDEAAPPLGLLEAAAELGRDDFKRLVVFHSLSKRSNVPGL-RSGFVAGDAALLKKFLLYRTYHGCAMPPAVQA  284 (396)
T ss_pred             ccccccccCCCCCCchhhhhccccCccccccEEEEeccccccCCccc-eeeeecCCHHHHHHHHHHhhhcccCCCHHHHH
Confidence            99998644332  111 10   0111  1223   38999876 699 99999999998888765433345677888888


Q ss_pred             HHHHHHHHHhhhcH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCe
Q 017259          237 VAIASLDVIRDEKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGI  311 (374)
Q Consensus       237 aa~~al~~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi  311 (374)
                      ++.+++.   .+++    ++.++++.+.+.+.|+..   +   ....+..|.++|++++ .    +..++++.|+ ++||
T Consensus       285 a~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~~~---~---~~~~p~~g~f~~~~~~-~----~~~~~~~~ll~~~gv  350 (396)
T PRK09147        285 ASIAAWN---DEAHVRENRALYREKFDAVTPILAPV---L---DVQLPDAGFYLWAKVP-G----DDTEFARRLYADYNV  350 (396)
T ss_pred             HHHHHhc---chhHHHHHHHHHHHHHHHHHHHHHHh---c---CCCCCCeeEEEEEECC-C----CHHHHHHHHHHhCCE
Confidence            7776653   2222    334444444444444432   1   1113456888998887 2    4578888886 6799


Q ss_pred             EeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          312 LAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       312 ~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.|+.            .+++||++.  .+++++++++++|+++++
T Consensus       351 ~v~pg~~f~~~~~~~~~~~~~iRi~~~--~~~~~l~~~l~rl~~~~~  395 (396)
T PRK09147        351 TVLPGSYLAREAHGVNPGAGRVRIALV--APLAECVEAAERIVDFCR  395 (396)
T ss_pred             EEeCCccccccccCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHhc
Confidence            997752            478999954  568899999999988764

>PRK08153 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=2.6e-27  Score=221.44  Aligned_cols=290  Identities=17%  Similarity=0.204  Sum_probs=204.1

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+|++.++++++.  +++++++|+++++..++.++     .++|     |.|++.+|+|.+....+...+..  
T Consensus        64 Y~~~~~~~Lr~~ia~~~~~~~~~I~it~G~~~~l~~~~~~~-----~~~g-----d~vlv~~p~y~~~~~~~~~~g~~--  131 (369)
T PRK08153         64 YGDPENHDLRHALAAHHGVAPENIMVGEGIDGLLGLIVRLY-----VEPG-----DPVVTSLGAYPTFNYHVAGFGGR--  131 (369)
T ss_pred             CCCCccHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEECCCcchHHHHHHHHcCCe--
Confidence            3344477899999998854  58999999999999998887     5567     99999999997765443333221  


Q ss_pred             ccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           96 AIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                                 +..+++    .|++++++.+..  ++++++++++++||+|.+. +.+.+++|.++|+ ++++||+||+|
T Consensus       132 -----------~~~vp~~~~~~~~~~l~~~~~~--~~~~~i~l~~P~NPtG~~~-~~~~l~~l~~~~~-~~~~lI~DE~y  196 (369)
T PRK08153        132 -----------LVTVPYRDDREDLDALLDAARR--ENAPLVYLANPDNPMGSWH-PAADIVAFIEALP-ETTLLVLDEAY  196 (369)
T ss_pred             -----------EEEeeCCCCCCCHHHHHHHhcc--cCCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEeCch
Confidence                       112221    256776655542  4678888888899999887 7888888888877 49999999999


Q ss_pred             cCCcccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          172 SGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .++.+.+......  ...+++   .||||.++ +|+ |+||+++++++++.+....  .+++.+.+++.++.++++   +
T Consensus       197 ~~~~~~~~~~~~~--~~~~~~i~~~SfSK~~g~~Gl-RiG~~v~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~  268 (369)
T PRK08153        197 CETAPAGAAPPID--TDDPNVIRMRTFSKAYGLAGA-RVGYAIGAPGTIKAFDKVR--NHFGMNRIAQAAALAALK---D  268 (369)
T ss_pred             hhhcCcccchhhh--hcCCCEEEEecchHhccCcch-heeeeecCHHHHHHHHHhh--cCCCCCHHHHHHHHHHhc---C
Confidence            9876544321111  123343   39999998 899 9999999999888876532  346789999999988885   2


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec-cC---CCCEEEE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-PT---HDTIVRL  323 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-~~---~~~~lRi  323 (374)
                      +++.++.++..++.++.+.+..... ++. ..+..+.++++.++...  ..+.++.++|.++||.++ ++   ..+++||
T Consensus       269 ~~~~~~~~~~~~~~r~~~~~~L~~~-g~~-~~p~~~~f~~~~~~~~~--~~a~~l~~~l~~~Gi~v~~p~~~~~~~~iRi  344 (369)
T PRK08153        269 QAYLAEVVGKIAAARDRIAAIARAN-GLT-PLPSATNFVAIDCGRDG--AFARAVLDGLIARDIFVRMPGVAPLDRCIRV  344 (369)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHC-CCc-cCCCcCcEEEEECCCCc--ccHHHHHHHHHHCCeEEeeCCCCCCCCeEEE
Confidence            3445555555555555544444332 222 22455777777764211  157899999999999996 43   2479999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          324 TPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ++   .+++++++++++|++++. ..+
T Consensus       345 s~---~~~~~~~~~~~al~~~~~-~~~  367 (369)
T PRK08153        345 SC---GPDEELDLFAEALPEALE-AAR  367 (369)
T ss_pred             ec---CCHHHHHHHHHHHHHHHH-Hhh
Confidence            93   378999999999999987 553

>TIGR03537 DapC succinyldiaminopimelate transaminase

Probab=99.96  E-value=7.2e-27  Score=217.12  Aligned_cols=294  Identities=15%  Similarity=0.129  Sum_probs=193.8

Q ss_pred             CcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++.+.+..|    .+ ++++|+|+++++..++..+.     .+| + +.|+|++..|+|.++...+...+....
T Consensus        40 ~lr~aia~~~~~~~g~~~~~~~~Iiit~Gs~~ai~~~~~~~~-----~~g-~-~~d~Vl~~~p~y~~~~~~~~~~g~~~~  112 (350)
T TIGR03537        40 ALREAISGWFERRFGVKLDPDAQVLPSAGSKEAIFHFPLVFI-----DPE-E-DRRRVIFGTPGYPVYERGALFAGGEPT  112 (350)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCcEEEcCChHHHHHHHHHHHc-----CCC-C-CCceEEEcCCCCcchHHHHHhcCCEEE
Confidence            344445555544333    45 89999999999999888773     333 0 116999999999887766655443322


Q ss_pred             ccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    +...+   -.+ -|+++++++++   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|..+
T Consensus       113 ~v----~~~~~---~~~~~d~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~  181 (350)
T TIGR03537       113 AV----KLKKE---DGFLLRLEKVEKSIL---EETKIVWINYPHNPTGATA-PRSYLKETIAMCREHGIILCSDECYTEI  181 (350)
T ss_pred             Ec----ccCcc---cCCccCHHHHHHhhh---hccEEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCcEEEEecccccc
Confidence            11    11000   001 27899988886   4688898888889999777 8999999999999999999999999865


Q ss_pred             cccccCcccccCCCC--CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhcH
Q 017259          175 ARSGRMLASDWEEVR--PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKL  250 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~--~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~~  250 (374)
                      ...+........+..  .-+.|+||.++ +|+ |+||+++++++.+.+.......+.+.+.+++.++.+++..-. ..+.
T Consensus       182 ~~~~~~~~~~~~~~~~~i~~~s~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  260 (350)
T TIGR03537       182 YFGEPPHSALEVGIENVLAFHSLSKRSGMTGY-RSGFVAGDEKLISFLRKLRANFGVASPDFVQAAAKAAWSDDNHVLER  260 (350)
T ss_pred             ccCCCCCchhhcCcCCEEEEeecccccCCccc-cceeeecCHHHHHHHHHHHHhhccCCCHHHHHHHHHHhCCcHHHHHH
Confidence            332222111111111  11338899997 699 999999998888877754333444556667777766654100 0123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEe
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLT  324 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~  324 (374)
                      +++++++.+.+.+.|+..     +.....+..+.++|+.+++..   +..++++.|.++||.+.++.      .+++||+
T Consensus       261 r~~l~~~~~~~~~~l~~~-----g~~~~~~~g~~~~~~~~~~~~---~~~~l~~~L~~~gv~v~~g~~f~~~~~~~~Ri~  332 (350)
T TIGR03537       261 RKIFKRKRDLFIEFFNKV-----GLEYLYPDATFYLWVKVPSGI---DAKDYALRLLENGIVVAPGENFGSGEEGYVRVA  332 (350)
T ss_pred             HHHHHHHHHHHHHHHHHC-----CCcccCCCeEEEEEEECCCCC---CHHHHHHHHHHCCEEEcCchhhCCCCCCEEEEE
Confidence            344444555554444433     221112234667788887543   57899999999999998752      5899999


Q ss_pred             cCCCCCHHHHHHHHHHHHH
Q 017259          325 PPLSISSNELQEGSKALHD  343 (374)
Q Consensus       325 ~~~~~~~e~i~~~~~~l~~  343 (374)
                      +  ..+++++++++++|++
T Consensus       333 ~--~~~~~~~~~~l~~~~~  349 (350)
T TIGR03537       333 L--VPTLEECEEALRLWER  349 (350)
T ss_pred             e--cCCHHHHHHHHHHHhc
Confidence            4  4678899999988764

Note: the detailed information included in the EC:2.6.1.17 record includes the assertions that the enzyme uses the pyridoxal pyrophosphate cofactor, which is consistent with the pfam00155 family, and the assertion that the amino group donor is L-glutamate, which is undetermined for the sequences in this clade.

>PRK13392 5-aminolevulinate synthase; Provisional

Probab=99.96  E-value=4.3e-27  Score=223.24  Aligned_cols=309  Identities=20%  Similarity=0.261  Sum_probs=214.0

Q ss_pred             hHHHHHHHhccccC--c--CC-CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS--R--AF-YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~--~--~~-~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++.....  +  .+ ..+.+.+|+++|++++|.+..++++||++|+..++..+..   ..+|     +.|++.
T Consensus        67 ~a~~~~~~~~~~~~~~s~~~~~~~~~~~~Le~~la~~~g~~~~i~~~sG~~a~~~~i~~l~~---~~~g-----~~vi~~  138 (410)
T PRK13392         67 GAMVDALDRYGAGAGGTRNISGTSHPHVLLERELADLHGKESALLFTSGYVSNDAALSTLGK---LLPG-----CVILSD  138 (410)
T ss_pred             HHHHHHHHHcCCCCchhhhcccChHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHHhc---CCCC-----CEEEEe
Confidence            56667776643321  1  12 3446889999999999888888888999999999987632   2245     666654


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      . .+|+.........+            ..+..++++|.+++++.+++.. ++++++++++++|++|.+.+    +++|.
T Consensus       139 ~-~~h~s~~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~t~~v~i~~~~n~tG~~~~----l~~i~  201 (410)
T PRK13392        139 A-LNHASMIEGIRRSG------------AEKQVFRHNDLADLEEQLASVDPDRPKLIAFESVYSMDGDIAP----IEAIC  201 (410)
T ss_pred             h-hhhHHHHHHHHHcC------------CeEEEEeCCCHHHHHHHHHhccCCCCEEEEEeCCCCCCccccc----HHHHH
Confidence            4 45665443333222            1223344567888888887543 57899999999999999998    99999


Q ss_pred             HHHHhcCCEEEEecccc-CC-cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC--CC
Q 017259          156 DLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--ST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~  227 (374)
                      ++|++||+++|+||+|+ |+ +..|..+ ....+.  .+|++  |+||+++.   ..||+++++++++.++.....  .+
T Consensus       202 ~l~~~~~~~livDea~~~g~~g~~g~g~-~~~~~~~~~~div~~tlsK~~g~---~GG~~~~~~~~~~~l~~~~~~~~~s  277 (410)
T PRK13392        202 DLADRYNALTYVDEVHAVGLYGARGGGI-AERDGLMDRIDMIQGTLAKAFGC---LGGYIAASADLIDFVRSFAPGFIFT  277 (410)
T ss_pred             HHHHHcCCEEEEECCccccCcCCCCCch-hhhccCCCCCcEEEEEChHhhhc---ccchhhcCHHHHHHHHHhCcchhcc
Confidence            99999999999999998 43 4444332 222222  34555  99999972   236788888888866543322  24


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.++++++++.++++.+... ...++++++.+++++.|++++..   .   ..+.+.++.+.++...   ...+++++|
T Consensus       278 ~~~~~~~~~a~~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~---~~~~~~~~~i~~~~~~---~~~~~~~~L  348 (410)
T PRK13392        278 TALPPAVAAGATAAIRHLKTSQTERDAHQDRVAALKAKLNANGIP---V---MPSPSHIVPVMVGDPT---LCKAISDRL  348 (410)
T ss_pred             CcCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC---C---CCCCCCEEEEEeCCHH---HHHHHHHHH
Confidence            455778888899999876543 34456777788888877765311   1   1234555555454321   467899999


Q ss_pred             H-HCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 K-ERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~-~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      + ++||++.+.       +..++||+++..++++|+++++++|+++++ ++
T Consensus       349 ~~~~GI~v~~~~~p~~~~~~~~lRis~~~~~t~edid~l~~aL~~~~~-~~  398 (410)
T PRK13392        349 MSEHGIYIQPINYPTVPRGTERLRITPTPLHDDEDIDALVAALVAIWD-RL  398 (410)
T ss_pred             HHhCCEEEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            7 579999763       236899999999999999999999999988 54

>PTZ00433 tyrosine aminotransferase; Provisional

Probab=99.96  E-value=8.5e-27  Score=221.14  Aligned_cols=290  Identities=14%  Similarity=0.113  Sum_probs=190.9

Q ss_pred             CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC
Q 017259           35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD  114 (374)
Q Consensus        35 ~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  114 (374)
                      ..+++++|+|+++++..++.++     ..+|     |+|++..|+|..+...+...+......    +...+...  -.|
T Consensus       103 ~~~~i~it~G~~~al~~~~~~~-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~~~~~i----~~~~~~~~--~~d  166 (412)
T PTZ00433        103 KKDNVVLCSGVSHAILMALTAL-----CDEG-----DNILVPAPGFPHYETVCKAYGIEMRFY----NCRPEKDW--EAD  166 (412)
T ss_pred             ChhhEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEccCCcccHHHHHHHcCCEEEEE----ecCccccC--cCC
Confidence            3568999999999999999988     5667     999999999987655544443221111    11000000  016


Q ss_pred             HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCc-ccccCC-CCCcE
Q 017259          115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEE-VRPDM  192 (374)
Q Consensus       115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~-~~~d~  192 (374)
                      ++++++.++   ++++++++++++||+|.+. +++.+++|.++|++||++||+||+|.++.+.+..+ ....+. ..+.+
T Consensus       167 ~~~l~~~~~---~~~~~i~~~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~i  242 (412)
T PTZ00433        167 LDEIRRLVD---DRTKALIMTNPSNPCGSNF-SRKHVEDIIRLCEELRLPLISDEIYAGMVFNGATFTSVADFDTTVPRV  242 (412)
T ss_pred             HHHHHHHhc---cCceEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCeEEEeccccccccCCCCccchhhccCCCceE
Confidence            888888776   4688888888899999777 89999999999999999999999999875444321 111111 11122


Q ss_pred             --EEeccccc-CCccchhhhee------CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHH
Q 017259          193 --VILGKALG-GGVIPVSAVLA------DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQ  263 (374)
Q Consensus       193 --~s~sK~~~-~G~~~~G~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~  263 (374)
                        -||||.++ +|+ |+||+++      .+++.+.+.... ...++.+.+++.++.+++... .+.+.++.++..+..++
T Consensus       243 ~~~SfSK~~~~pGl-RlG~~i~~~p~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~~l~~~-~~~~~~~~~~~~~~~r~  319 (412)
T PTZ00433        243 ILGGTAKNLVVPGW-RLGWLLLVDPHGNGGDFLDGMKRLG-MLVCGPCSVVQAALGEALLNT-PQEHLEQIVAKLEEGAM  319 (412)
T ss_pred             EEccchhhcCCCCe-eEEEEEEeCCcccHHHHHHHHHHHh-hccCCCChHHHHHHHHHHhcC-cHHHHHHHHHHHHHHHH
Confidence              28999996 799 9999886      245666655321 224567888888888777531 12334333333333333


Q ss_pred             HHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHH-CCeEeccCC----CCEEEEecCCCCCHHHHHH
Q 017259          264 HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKE-RGILAKPTH----DTIVRLTPPLSISSNELQE  336 (374)
Q Consensus       264 ~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~-~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~  336 (374)
                      .+.+....+.++....+..|.|+|+.++....  ..+..++++.|++ +||.+.++.    .+++||+++  ..++++++
T Consensus       320 ~l~~~L~~~~~~~~~~p~gg~f~~~~l~~~~~~~~~~~~~~~~~ll~~~gV~v~pg~~f~~~~~iRis~~--~~~e~l~~  397 (412)
T PTZ00433        320 VLYNHIGECIGLSPTMPRGSMFLMSRLDLEKFRDIKSDVEFYEKLLEEENVQVLPGEIFHMPGFTRLTIS--RPVEVLRE  397 (412)
T ss_pred             HHHHHHhcCCCCcccCCCeeEEEEEEechhhcCCCCCHHHHHHHHHHhcCEEEeCccccCCCCeEEEEec--CCHHHHHH
Confidence            33333322212211223357788888764100  0135789999985 799999863    589999965  46889999


Q ss_pred             HHHHHHHHHhccCC
Q 017259          337 GSKALHDVLELDLP  350 (374)
Q Consensus       337 ~~~~l~~~~~~~~~  350 (374)
                      ++++|.++++ ...
T Consensus       398 al~~l~~~~~-~~~  410 (412)
T PTZ00433        398 AVERIKAFCE-RHK  410 (412)
T ss_pred             HHHHHHHHHH-Hhc
Confidence            9999999987 543

>PLN02955 8-amino-7-oxononanoate synthase

Probab=99.96  E-value=5.3e-27  Score=219.31  Aligned_cols=314  Identities=14%  Similarity=0.114  Sum_probs=220.3

Q ss_pred             hHHHHHHHhcccc--Cc---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccc-c-ccCC-CCccEE
Q 017259            2 KALQEQAEKLTLS--SR---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV-K-KKFS-IDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~-~-~G~~-~~~~~v   73 (374)
                      +++.+++++....  .+   .+..+.+++||++|++++|.+.+++++||..|+..++..+..-... . .+.+ .+++.+
T Consensus       123 ~a~~~ai~~yG~g~~gSrl~~G~~~~h~~LE~~LA~f~g~e~all~sSGy~AN~~~i~aL~~~~~~~~~~~~~~~~~~d~  202 (476)
T PLN02955        123 NAAANAAKEYGMGPKGSALICGYTTYHRLLESSLADLKKKEDCLVCPTGFAANMAAMVAIGSVASLLAASGKPLKNEKVA  202 (476)
T ss_pred             HHHHHHHHHcCCCCCCcCccccChHHHHHHHHHHHHHHCCCcEEEECChHHHHHHHHHHHhhccccccccccccCCCCcE
Confidence            4566666664321  12   2556778999999999999999999999999999999887321000 0 0000 112445


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ++.+..-|........++...        -...+..++++|+++|+++|++.+++.++|++++++++.|.+.|    +++
T Consensus       203 i~~D~~~HaSI~dG~~ls~~~--------~~a~~~~f~HND~~~Le~~L~~~~~~~~~Vv~EgV~SmdGdiap----L~e  270 (476)
T PLN02955        203 IFSDALNHASIIDGVRLAERQ--------GNVEVFVYRHCDMYHLNSLLSSCKMKRKVVVTDSLFSMDGDFAP----MEE  270 (476)
T ss_pred             EEEeccchHHHHHHHHhcccc--------CCceEEEeCCCCHHHHHHHHHhCCCCceEEEEeCCCCCCCCcCC----HHH
Confidence            555655577655554433110        00235567889999999999877667789999999999999999    999


Q ss_pred             HHHHHHhcCCEEEEeccccC--CcccccCcccccCCCCCcE----EEecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDM----VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~~~d~----~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      |.++|++||.+||+||+|+.  +|..|.. ....+++.+++    .||||++|  . +.|++++++++++.++.......
T Consensus       271 L~~L~~~~ga~LiVDEAH~~Gv~G~~G~G-~~e~~g~~~di~ii~~TLsKA~G--~-~GGfi~gs~~~~~~l~~~~~~~i  346 (476)
T PLN02955        271 LSQLRKKYGFLLVIDDAHGTFVCGENGGG-VAEEFNCEADVDLCVGTLSKAAG--C-HGGFIACSKKWKQLIQSRGRSFI  346 (476)
T ss_pred             HHHHHHHcCcEEEEcccccCceecCCCCc-HHHHhCCCCCCcEEEEeCccchh--c-cCceeecHHHHHHHHHHhCCCCe
Confidence            99999999999999999983  3444444 33455554443    59999987  1 34558888888888875444444


Q ss_pred             C--CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          228 F--GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       228 ~--~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      |  +.++...++++++++.+..+ ..+++++++.+++++.   +     ++..    .+.++.+.+.+..   ...++++
T Consensus       347 fStalpp~~aaa~laal~l~~~~~~~r~~L~~n~~~fr~~---~-----G~~~----~sPI~pI~ig~~~---~a~~~~~  411 (476)
T PLN02955        347 FSTAIPVPMAAAAYAAVVVARKEKWRRKAIWERVKEFKAL---S-----GVDI----SSPIISLVVGNQE---KALKASR  411 (476)
T ss_pred             ecccccHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh---c-----CCCC----CCCEEEEEeCCHH---HHHHHHH
Confidence            4  33556677788888887544 4456677777766652   1     1211    2455555565443   6778999


Q ss_pred             HHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+++||++.+.       +...+||+++..++++|+++++++|.++.+
T Consensus       412 ~L~~~Gi~v~~i~yPtVP~g~~rLRi~lsA~Ht~edId~lv~~L~~~~~  460 (476)
T PLN02955        412 YLLKSGFHVMAIRPPTVPPNSCRLRVTLSAAHTTEDVKKLITALSSCLD  460 (476)
T ss_pred             HHHHCCCEEEEECCCCCCCCCceEEEeeCCCCCHHHHHHHHHHHHHHHh
Confidence            999999998642       345799999999999999999999999887

>PRK02610 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=3.8e-27  Score=220.79  Aligned_cols=294  Identities=15%  Similarity=0.157  Sum_probs=197.5

Q ss_pred             CCCcHHHHHHHHhccc----------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259           19 YNDKFPVFAERLTSMF----------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~----------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +.+...+|.+.+++++          ..+++++|+|+++++..++.++     ..+|    .++|++..|+|.++...+.
T Consensus        64 ~~~G~~~Lr~aia~~~~~~~~~~~~v~~~~I~it~Ga~~al~~~~~~~-----~~~g----~~~Vlv~~P~y~~~~~~~~  134 (374)
T PRK02610         64 PDGGHEALKQAIAEYVNESAAGSSQITPANISVGNGSDELIRSLLIAT-----CLGG----EGSILVAEPTFSMYGILAQ  134 (374)
T ss_pred             CCCchHHHHHHHHHHhCccccccCCCCHHHEEEcCChHHHHHHHHHHH-----cCCC----CCeEEEcCCChHHHHHHHH
Confidence            3344455555555544          3357999999999998777765     3344    1489999999987766655


Q ss_pred             cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc-CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                      ..+......    +...+.  . -.|++++++++++. .++++++++++++||||.+. +++.+++|.++|  ++++||+
T Consensus       135 ~~g~~~~~~----~~~~~~--~-~~d~~~l~~~~~~~~~~~~k~i~l~~P~NPTG~~~-s~~~l~~l~~~~--~~~~iI~  204 (374)
T PRK02610        135 TLGIPVVRV----GRDPET--F-EIDLAAAQSAIEQTQNPPVRVVFVVHPNSPTGNPL-TAAELEWLRSLP--EDILVVI  204 (374)
T ss_pred             HcCCEEEEe----cCCccc--C-CCCHHHHHHHHHhhcCCCceEEEEeCCCCCCCCCC-CHHHHHHHHhcc--CCcEEEE
Confidence            444322111    110000  0 02789999888642 13788998888899999888 788899999887  4999999


Q ss_pred             eccccCCcccccCcccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          168 DEIQSGLARSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      ||+|.+|.....   .......++   +-||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++..+++
T Consensus       205 De~Y~~~~~~~~---~~~~~~~~~~ivi~SfSK~~g~~Gl-RiG~~v~~~~l~~~l~~~~--~~~~~~~~~q~a~~~~l~  278 (374)
T PRK02610        205 DEAYFEFSQTTL---VGELAQHPNWVILRTFSKAFRLAAH-RVGYAIGHPELIAVLEKVR--LPYNLPSFSQLAAQLALE  278 (374)
T ss_pred             eccccccCccch---HHHHhcCCCEEEEEecchhccCccc-ceeeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhc
Confidence            999998742111   111111223   338999996 799 9999999999988886543  345668888888877775


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEE
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRL  323 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi  323 (374)
                      ..  +.+.+.++...+. ++.+.+....++++ ...+..+.|+|+.++...   +..++++.|.++||.+++. .+++||
T Consensus       279 ~~--~~~~~~~~~~~~~-r~~l~~~L~~~~~~-~~~p~~g~f~~~~l~~~~---~~~~~~~~l~~~gi~v~~~-~~~lRl  350 (374)
T PRK02610        279 HR--QELLAAIPEILQE-RDRLYQALQELPQL-RVWPSAANFLYLRLSQDA---ALAALHQALKAQGTLVRHT-GGGLRI  350 (374)
T ss_pred             CH--HHHHHHHHHHHHH-HHHHHHHHHhCCCc-EeCCCcceEEEEeCCCCC---CHHHHHHHHHHCCEEEEeC-CCeEEE
Confidence            32  2334444443333 23333333333332 223456888898887543   6788999999999999876 679999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          324 TPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.   +.+++++++++|+++++ .+
T Consensus       351 s~~---~~~~~~~~l~~l~~~l~-~~  372 (374)
T PRK02610        351 TIG---TPEENQRTLERLQAALT-QL  372 (374)
T ss_pred             eCC---CHHHHHHHHHHHHHHHh-hc
Confidence            943   46788999999999987 55

>TIGR03540 DapC_direct LL-diaminopimelate aminotransferase

Probab=99.96  E-value=6.3e-27  Score=220.31  Aligned_cols=292  Identities=15%  Similarity=0.180  Sum_probs=194.0

Q ss_pred             CcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++.+.+.++    .+ ++++|+|+++++..+++.+     ..+|     |.|++.+|+|..+...+...+....
T Consensus        71 ~lr~~ia~~~~~~~~~~~~~~~~vi~t~G~~~~l~~~~~~~-----~~~g-----d~vlv~~P~y~~~~~~~~~~G~~v~  140 (383)
T TIGR03540        71 AYRQAVADWYKRRFGVELDPETEVLSLIGSKEGIAHIPLAF-----VNPG-----DIVLVPDPGYPVYRIGTLFAGGEPY  140 (383)
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCeEEECCCcHHHHHHHHHHh-----CCCC-----CEEEEeCCCCcchHHHHHhcCCEEE
Confidence            344455555554333    34 5889999999999998887     5677     9999999999887665544443211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+...  ..|++++++.+.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.
T Consensus       141 ~v----~~~~~~g~--~~d~~~l~~~~~---~~~~~v~i~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~l~  210 (383)
T TIGR03540       141 EM----PLKEENGF--LPDFDAIPEDIA---KKAKLMFINYPNNPTGAVA-PLKFFKELVEFAKEYNIIVCHDNAYSEIT  210 (383)
T ss_pred             EE----ecCcccCC--ccCHHHHHhhcc---ccceEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCEEEEEecchhhhc
Confidence            11    11100000  026888887775   4688899888888999777 89999999999999999999999999765


Q ss_pred             ccccC-cccccC-CCC---CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          176 RSGRM-LASDWE-EVR---PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       176 ~~g~~-~~~~~~-~~~---~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      +.+.. ...... +..   ..+.||||.++ +|+ |+||+++++++.+.+.........+.+.+.+.++.++++....  
T Consensus       211 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~g~~Gl-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  289 (383)
T TIGR03540       211 FDGYKAPSFLEVDGAKDVGIEFHSLSKTYNMTGW-RIGMAVGNADLIAGLGKVKTNVDSGVFQAIQYAAIAALNGPQDVV  289 (383)
T ss_pred             cCCCCCcCcccCCCcccCEEEEEecccccCCccc-eeeEEeCCHHHHHHHHHHHHhcccCCChHHHHHHHHHHhCCHHHH
Confidence            43321 111111 111   22449999997 799 9999999999888876543333445566777777777753211  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------CCE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTI  320 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~  320 (374)
                      ++..+.++++.+.+.+.|++.     ++.......+.++|+.+++..   +..++++.|+ ++||.+.++.      +++
T Consensus       290 ~~~~~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~ll~~~gi~v~~g~~f~~~~~~~  361 (383)
T TIGR03540       290 KEIRKIYQRRRDLLLEALKKI-----GIDVEKPKATFYVWVPVPEGY---TSAEFAARLLEETGVVVTPGVGFGEYGEGY  361 (383)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC-----CCEecCCCcceEEEEECCCCC---CHHHHHHHHHHHCCEEEecchhhCccCCCe
Confidence            123344444455555555443     222112234667888887543   6788999986 6799999852      479


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +||+++  .+++++.+++++|++
T Consensus       362 ~Ris~~--~~~~~l~~~l~~l~~  382 (383)
T TIGR03540       362 IRISLT--VPDERLEEAVARIKK  382 (383)
T ss_pred             EEEEec--CCHHHHHHHHHHHhh
Confidence            999964  567888888887754

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known aminotransferases, succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh). Although there is no experimental characterization of any of the sequences in this clade, a direct pathway is known in plants and Chlamydia, so it seems quite reasonable that these enzymes catalyze the same transformation.

>PRK08068 transaminase; Reviewed

Probab=99.96  E-value=8.5e-27  Score=219.75  Aligned_cols=292  Identities=13%  Similarity=0.109  Sum_probs=190.9

Q ss_pred             CcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++++.+.+|    .+ ++++|+|+++++..++.++     ..+|     |+|++.+|+|..+...+...+....
T Consensus        74 ~lr~aia~~~~~~~g~~~~~~~~i~it~G~~~~l~~~~~~~-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~~~~  143 (389)
T PRK08068         74 FLKEAAADFYKREYGVTLDPETEVAILFGGKAGLVELPQCL-----MNPG-----DTILVPDPGYPDYLSGVALARAQFE  143 (389)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHhcCCEEE
Confidence            334444444433223    35 6999999999999888877     5677     9999999999776655444332211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+...  ..|++++++.+.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.
T Consensus       144 ~i----~~~~~~~~--~~d~~~l~~~~~---~~~~~v~l~~P~NPTG~~~-s~~~~~~l~~la~~~~~~ii~Deay~~~~  213 (389)
T PRK08068        144 TM----PLIAENNF--LPDYTKIPEEVA---EKAKLMYLNYPNNPTGAVA-TKAFFEETVAFAKKHNIGVVHDFAYGAIG  213 (389)
T ss_pred             Ee----ecccccCC--CCCHHHHHHhcc---ccceEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEehhhhhhc
Confidence            11    11110000  026788887775   3678888887789999877 89999999999999999999999998765


Q ss_pred             cccc-Ccc-cccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          176 RSGR-MLA-SDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       176 ~~g~-~~~-~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      +.+. ... ....+....   +.||||.++ +|+ |+||+++++++++.+.........+.+++.+.++.+++.....  
T Consensus       214 ~~~~~~~s~~~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  292 (389)
T PRK08068        214 FDGQKPVSFLQTPGAKDVGIELYTLSKTFNMAGW-RVAFAVGNESVIEAINLLQDHLFVSLFGAIQDAAIEALLSDQSCV  292 (389)
T ss_pred             cCCCCCcChhhCCCccCCEEEEecchhccCCccc-eeEeEecCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCcHHHH
Confidence            5442 211 111222222   339999997 799 9999999999988886543333344455566666666542111  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC------CCE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTI  320 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~  320 (374)
                      +..++.++++++.+.+.|+..     +........+.++|+.+++..   +..++++.|++ +||.+.++.      .++
T Consensus       293 ~~~~~~~~~~r~~~~~~L~~~-----g~~~~~~~g~~~~~v~~~~~~---~~~~~~~~l~~~~gi~v~pg~~f~~~~~~~  364 (389)
T PRK08068        293 AELVARYESRRNAFISACREI-----GWEVDAPKGSFFAWMPVPKGY---TSEQFADLLLEKAHVAVAPGNGFGEHGEGY  364 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CCcccCCCeeEEEEEECCCCC---CHHHHHHHHHHhCCEEEecchHhCccCCCe
Confidence            133455555555555555443     221112233566788886543   67899999986 599998852      579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +||++.  .+++.+..++++|++
T Consensus       365 iRi~~~--~~~~~l~~al~~l~~  385 (389)
T PRK08068        365 VRVGLL--TDEERLREAVERIGK  385 (389)
T ss_pred             EEEEEc--CCHHHHHHHHHHHHH
Confidence            999964  466777777777765

>TIGR01264 tyr_amTase_E tyrosine aminotransferase, eukaryotic

Probab=99.96  E-value=9.6e-27  Score=220.25  Aligned_cols=301  Identities=13%  Similarity=0.130  Sum_probs=195.6

Q ss_pred             CCcHHHHHHHHhccc-------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           20 NDKFPVFAERLTSMF-------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      .....++.+.+++++       ..+++++|+|+++++..++.++     .++|     |+|++.+|+|..+...+...+.
T Consensus        72 ~~g~~~lr~aia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~v~i~~P~y~~~~~~~~~~g~  141 (401)
T TIGR01264        72 TVGALSAREAIASYYHNPDGPIEADDVVLCSGCSHAIEMCIAAL-----ANAG-----QNILVPRPGFPLYETLAESMGI  141 (401)
T ss_pred             CCCCHHHHHHHHHHHhhcCCCCCHHHEEECcChHHHHHHHHHHh-----CCCC-----CEEEEeCCCChhHHHHHHHcCC
Confidence            444455666666554       3468999999999999999888     4567     9999999999766544443332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +...+...  -.|++.+++.++   ++++++++++++||+|.+. +.+.+++|.++|+++|++||+||+|.
T Consensus       142 ~v~~~----~~~~~~~~--~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~  211 (401)
T TIGR01264       142 EVKLY----NLLPDKSW--EIDLKQLESLID---EKTAALIVNNPSNPCGSVF-SRQHLEEILAVAERQCLPIIADEIYG  211 (401)
T ss_pred             EEEEe----ecCCccCC--CCCHHHHHHHhc---cCceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEhhhh
Confidence            11110    10000000  027888888776   3578888888899999877 89999999999999999999999999


Q ss_pred             CCcccccCcccccCCCCC--cE---EEeccccc-CCccchhhheeCH------HHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          173 GLARSGRMLASDWEEVRP--DM---VILGKALG-GGVIPVSAVLADK------EVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~--d~---~s~sK~~~-~G~~~~G~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      +|.+.+..+. ......+  .+   -||||.++ +|+ |+||+++++      ++++.+.... ...++.+.+++.++.+
T Consensus       212 ~~~~~~~~~~-~~~~~~~~~~vi~~~SfSK~~~~~Gl-RiG~iv~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~q~a~~~  288 (401)
T TIGR01264       212 DMVFSGATFE-PLASLSSTVPILSCGGLAKRWLVPGW-RLGWIIIHDRRGILRDIRDGLVKLS-QRILGPCTIVQGALPS  288 (401)
T ss_pred             hhccCCcccc-cHHHcCCCCcEEEEccCcccCCCccc-eEEEEEecCcchhHHHHHHHHHHHh-hccCCCCcHHHHHHHH
Confidence            8755443211 1111222  23   38999966 799 999998763      3444443221 1235567888888877


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC--CCchhHHHHHHHHH-HCCeEeccCC
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT--ALPVSAYDICLKMK-ERGILAKPTH  317 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~--~~~~~~~~~~~~l~-~~Gi~v~~~~  317 (374)
                      +++.. .+++.++.++..+..++.+.+....+++.....+..|+|+|+.++..  ....+..++++.|+ ++||.+.|+.
T Consensus       289 ~l~~~-~~~~l~~~~~~~~~~r~~l~~~L~~~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gI~v~pg~  367 (401)
T TIGR01264       289 ILLRT-PQEYFDGTLSVLESNAMLCYGALAAVPGLRPVMPSGAMYMMVGIEMEHFPEFKNDVEFTERLVAEQSVFCLPGS  367 (401)
T ss_pred             HHHhC-cHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccCCCeeeEEEEEecccccCCCCCHHHHHHHHHHhCCEEEeCch
Confidence            77531 12333333333333333343333333332222345688999887531  00014577888886 6899998853


Q ss_pred             ----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 ----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                          .+++||+++  .+++++++++++|.++++
T Consensus       368 ~f~~~~~iRis~~--~~~~~l~~~l~rl~~~~~  398 (401)
T TIGR01264       368 CFEYPGFFRVVLT--VPVVMMEEACSRIQEFCE  398 (401)
T ss_pred             hcCCCCeEEEEEc--CCHHHHHHHHHHHHHHHh
Confidence                689999954  568999999999999887

This model describes tyrosine aminotransferase as found in animals and Trypanosoma cruzi. It is the first enzyme of a pathway of tyrosine degradation via homogentisate. Several plant enzyme designated as probable tyrosine aminotransferases are very closely related to an experimentally demonstrated nicotianamine aminotransferase, an enzyme in a siderophore (iron uptake chelator) biosynthesis pathway. These plant sequences are excluded from the model seed and score between the trusted an noise cutoffs.

>PRK07683 aminotransferase A; Validated

Probab=99.96  E-value=1e-26  Score=218.89  Aligned_cols=294  Identities=16%  Similarity=0.181  Sum_probs=195.7

Q ss_pred             CcHHHHHHHHhccc--------CCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           21 DKFPVFAERLTSMF--------GYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      ....++++.+++++        ..+ ++++|+|+++|+..++..+     .++|     |+|++..|+|.++.......+
T Consensus        65 ~g~~~lr~~ia~~l~~~~g~~~~~~~~I~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g  134 (387)
T PRK07683         65 AGLLELRKAACNFVKDKYDLHYSPESEIIVTIGASEAIDIAFRTI-----LEPG-----TEVILPAPIYPGYEPIIRLCG  134 (387)
T ss_pred             CCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCccchHHHHHHcC
Confidence            33444555555443        345 8999999999999998877     5567     999999999987655554433


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ......    +.  +..... .|.+++++.++   ++++++++.+++|++|.+. +.+.+++|.++|+++|++||+||+|
T Consensus       135 ~~~~~~----~~--~~~~~~-~~~~~l~~~~~---~~~~~i~i~~p~NPtG~~~-s~~~~~~l~~~~~~~~~~ii~De~y  203 (387)
T PRK07683        135 AKPVFI----DT--RSTGFR-LTAEALENAIT---EKTRCVVLPYPSNPTGVTL-SKEELQDIADVLKDKNIFVLSDEIY  203 (387)
T ss_pred             CEEEEe----ec--CcccCC-CCHHHHHHhcC---cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCeEEEEeccc
Confidence            221111    11  000011 15788888776   4678888888899999877 8999999999999999999999999


Q ss_pred             cCCcccccCcccccC-CCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGRMLASDWE-EVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      .++.+.+.......+ +...+   +.||||.++ +|+ |+||+++++++++.+.........+.+.+++.++.+.++...
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~pGl-RiG~i~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~  282 (387)
T PRK07683        204 SELVYEQPHTSIAHFPEMREKTIVINGLSKSHSMTGW-RIGFLFAPSYLAKHILKVHQYNVTCASSISQYAALEALTAGK  282 (387)
T ss_pred             ccceeCCCcCChhhccCCcCCeEEEeeccccccCccc-eeEEEEcCHHHHHHHHHHHHhccCCCChHHHHHHHHHHhCCh
Confidence            977443332221111 22222   338999999 899 999999999988887643222234456778877777775321


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHH-HHCCeEeccCC-----
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKM-KERGILAKPTH-----  317 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l-~~~Gi~v~~~~-----  317 (374)
                      .  +..+++++++.+.+.+.|++.     ++....+..+.++|..++. ..   +..+++..+ .++||.+.|+.     
T Consensus       283 ~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~gI~v~pg~~f~~~  354 (387)
T PRK07683        283 DDAKMMRHQYKKRRDYVYNRLISM-----GLDVEKPTGAFYLFPSIGHFTM---SSFDFALDLVEEAGLAVVPGSAFSEY  354 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCeeEEEEEecccCCC---CHHHHHHHHHHhCCEEEcCchhhCCC
Confidence            1  123444455555555555443     2221122345566655553 22   456777665 56799998852     


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .+++||++.  .+++++.+++++|.++++
T Consensus       355 ~~~~~Ri~~~--~~~~~~~~al~~l~~~l~  382 (387)
T PRK07683        355 GEGYVRLSYA--YSIETLKEGLDRLEAFLQ  382 (387)
T ss_pred             CCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence             589999955  478999999999999887

>PRK05958 8-amino-7-oxononanoate synthase; Reviewed

Probab=99.96  E-value=6.9e-27  Score=220.39  Aligned_cols=305  Identities=22%  Similarity=0.242  Sum_probs=215.2

Q ss_pred             hHHHHHHHhcccc-----CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLS-----SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~-----~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+....     ...+..+..++++++++++++.++.+++++|++++..+++.+     .++|     |+|++.
T Consensus        60 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~g~~~~~~~l~~~-----~~~g-----d~V~~~  129 (385)
T PRK05958         60 AAAQQAARRYGAGSGGSRLVTGNSPAHEALEEELAEWFGAERALLFSSGYAANLAVLTAL-----AGKG-----DLIVSD  129 (385)
T ss_pred             HHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHh-----CCCC-----CEEEEe
Confidence            4566666553211     112446678899999999998788888889999988877665     5677     999998


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      ++.| +.......+.+            ..+..++..|++++++.++..++++++++++++++++|...+    +++|.+
T Consensus       130 ~~~~-~~~~~~~~~~g------------~~~~~~~~~d~~~l~~~i~~~~~~~~lvi~~~~~~~~G~~~~----l~~i~~  192 (385)
T PRK05958        130 KLNH-ASLIDGARLSR------------ARVRRYPHNDVDALEALLAKWRAGRALIVTESVFSMDGDLAP----LAELVA  192 (385)
T ss_pred             CccC-HHHHHHHHhcC------------CceEEeCCCCHHHHHHHHHhccCCCeEEEEEecccCCCCcCC----HHHHHH
Confidence            8875 43333222221            223345556899999998754345788888889888998877    999999


Q ss_pred             HHHhcCCEEEEeccccC--CcccccCccc-ccCCCCCc---EEEecccccCCccchhhheeCHHHHhhcCCCC--CCCCC
Q 017259          157 LCSKYNILMIADEIQSG--LARSGRMLAS-DWEEVRPD---MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTF  228 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~--~~~~g~~~~~-~~~~~~~d---~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~  228 (374)
                      +|++||++||+||+|+.  ++..|..+.. ......++   +.|+||++++   ++||+++++++.+.+....  ...+.
T Consensus       193 ia~~~~~~li~De~~~~g~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~---~Gg~~~~~~~~~~~~~~~~~~~~~~~  269 (385)
T PRK05958        193 LARRHGAWLLVDEAHGTGVLGPQGRGLAAEAGLAGEPDVILVGTLGKALGS---SGAAVLGSETLIDYLINRARPFIFTT  269 (385)
T ss_pred             HHHHhCCEEEEECcccccccCCCCCchHHhhCCCCCCceEEEEechhhccc---CCcEEEcCHHHHHHHHHhCccceecC
Confidence            99999999999999973  3333332211 11222345   4589999963   3467888888877664321  22334


Q ss_pred             CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.+++.++++.++++.+... ++.++++++.+++.+.|+++.  + .+   ..+.+.++++.+++..   +..++.+.|.
T Consensus       270 ~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~---~~~~~~~~~~~~~~~~---~~~~~~~~l~  340 (385)
T PRK05958        270 ALPPAQAAAARAALRILRREPERRERLAALIARLRAGLRALG--F-QL---MDSQSAIQPLIVGDNE---RALALAAALQ  340 (385)
T ss_pred             CCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--C-Cc---CCCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence            56777878888888877553 577888888888888887652  1 11   2345677888776432   5678999999


Q ss_pred             HCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          308 ERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       308 ~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++||.+.+.       +.+++||+++..++++++++++++|++++
T Consensus       341 ~~gI~v~~~~~~~~~~~~~~lRis~~~~~~~~~i~~~l~~l~~~~  385 (385)
T PRK05958        341 EQGFWVGAIRPPTVPAGTSRLRITLTAAHTEADIDRLLEALAEAL  385 (385)
T ss_pred             HCCceEecccCCCCCCCCceEEEEecCCCCHHHHHHHHHHHHhcC
Confidence            999999752       24689999998899999999999998753

>PRK06939 2-amino-3-ketobutyrate coenzyme A ligase; Provisional

Probab=99.96  E-value=9.2e-27  Score=220.46  Aligned_cols=308  Identities=19%  Similarity=0.235  Sum_probs=212.5

Q ss_pred             hHHHHHHHhccccC-c----CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS-R----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+..+.. +    .+..+++++++++++++++.++.+++++|++++..+++++     .++|     |.|++.
T Consensus        63 ~a~~~~~~~~~~~~~~~~~~~G~~~l~~~l~~~la~~~g~~~~i~~tsG~~a~~~~~~~l-----~~~g-----d~vi~~  132 (397)
T PRK06939         63 AAAKAALDSHGFGMASVRFICGTQDLHKELEEKLAKFLGTEDAILYSSCFDANGGLFETL-----LGKE-----DAIISD  132 (397)
T ss_pred             HHHHHHHHHcCCCCcccccccCCcHHHHHHHHHHHHHhCCCcEEEEcChHHHHHHHHHHh-----CCCC-----CEEEEE
Confidence            45566665533221 1    2445678889999999987776666666789999888776     5677     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      +|+|.+.........             ..+..+++.|++++++.++++   ..++++++++++++++|...+    +++
T Consensus       133 ~~~~~~~~~~~~~~~-------------~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~v~~~~v~~~~G~~~~----~~~  195 (397)
T PRK06939        133 ALNHASIIDGVRLCK-------------AKRYRYANNDMADLEAQLKEAKEAGARHKLIATDGVFSMDGDIAP----LPE  195 (397)
T ss_pred             hhhhHHHHHHHHhcC-------------CceEEeCCCCHHHHHHHHHhhhccCCCCeEEEEecCcCCCCCcCC----HHH
Confidence            999876544333222             122333446899999888742   236888888888888898776    999


Q ss_pred             HHHHHHhcCCEEEEecccc-CC-cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      |.++|++||++||+||+|+ ++ +..+.. .....+.  .+|++  |+||+++ |+ |+||+++++++++.+........
T Consensus       196 l~~la~~~~~~li~De~~~~g~~~~~~~~-~~~~~~~~~~~~i~~~S~sK~~~-g~-r~G~v~~~~~~~~~l~~~~~~~~  272 (397)
T PRK06939        196 ICDLADKYDALVMVDDSHAVGFVGENGRG-TVEHFGVMDRVDIITGTLGKALG-GA-SGGYTAGRKEVIDWLRQRSRPYL  272 (397)
T ss_pred             HHHHHHHhCCEEEEECcccccCcCCCCCC-HHHHcCCCCCCcEEEEECHHHhC-cc-CceEEEeCHHHHHHHHHhCcccc
Confidence            9999999999999999996 33 222221 1122222  34555  8999995 56 88999999988888764322222


Q ss_pred             C--CCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          228 F--GGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       228 ~--~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +  +.++..++++.++++.+.. +++.++++++.+++.+.|+.....   .   ..+.+.++++.++...   +..++++
T Consensus       273 ~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~---~---~~~~~~~~~~~~~~~~---~~~~~~~  343 (397)
T PRK06939        273 FSNSLAPAIVAASIKVLELLEESDELRDRLWENARYFREGMTAAGFT---L---GPGEHPIIPVMLGDAK---LAQEFAD  343 (397)
T ss_pred             ccCCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC---c---CCCCCCEEEEEECCHH---HHHHHHH
Confidence            2  3345556677777777643 356778888888888888765211   1   1123445544444322   5678999


Q ss_pred             HHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|.++||.+.+.       +.+++|++++..++++++++++++|+++++ ++
T Consensus       344 ~L~~~gI~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~l~~L~~~~~-~~  394 (397)
T PRK06939        344 RLLEEGVYVIGFSFPVVPKGQARIRTQMSAAHTKEQLDRAIDAFEKVGK-EL  394 (397)
T ss_pred             HHHHCCceEeeeCCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            999999988642       236899998888999999999999999987 53

>PRK09276 LL-diaminopimelate aminotransferase; Provisional

Probab=99.96  E-value=9.9e-27  Score=219.13  Aligned_cols=291  Identities=14%  Similarity=0.174  Sum_probs=191.6

Q ss_pred             cHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           22 KFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        22 ~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      +++.+++.+.+.+|    .+ .+++|+|+++++..++.++     .++|     |+|++.+|+|..+...+...+.....
T Consensus        74 lr~aia~~~~~~~g~~~~~~~~ii~t~G~~~~i~~~~~~~-----~~~g-----d~Vl~~~P~y~~~~~~~~~~g~~~~~  143 (385)
T PRK09276         74 FRKAVADWYKRRFGVELDPETEVISLIGSKEGIAHIPLAF-----VNPG-----DVVLVPDPGYPVYKIGTIFAGGEPYF  143 (385)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcChHHHHHHcCCEEEE
Confidence            34445555543333    34 4888999999999998887     5677     99999999998766554443322111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                      .    +...+...  ..|++++++.+.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.+
T Consensus       144 v----~~~~~~g~--~~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~ii~De~y~~~~~  213 (385)
T PRK09276        144 M----PLKEENGF--LPDLDAIPEDVA---KKAKLMFINYPNNPTGAVA-DLEFFEEVVDFAKKYDIIVCHDAAYSEIAY  213 (385)
T ss_pred             E----ecCCCCCC--cCCHHHHHHhcc---ccceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEEecchhheec
Confidence            1    11110000  026788877765   4688899888889999877 899999999999999999999999997644


Q ss_pred             cccCc-cc-ccCC---CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--h
Q 017259          177 SGRML-AS-DWEE---VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--E  248 (374)
Q Consensus       177 ~g~~~-~~-~~~~---~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~  248 (374)
                      .+... .. ...+   ....+.||||.++ +|+ |+||+++++++++.+.........+.+.+.+.++..+++....  +
T Consensus       214 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  292 (385)
T PRK09276        214 DGYKPPSFLEVPGAKDVGIEFHSLSKTYNMTGW-RIGFAVGNADLIAGLGKVKSNVDSGVFQAIQEAGIAALNGPQEVVE  292 (385)
T ss_pred             CCCCCCChhccCCCcCCEEEEecchhhcCCcch-hheeeeCCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHcCcHHHHH
Confidence            33211 11 1111   1123449999997 799 9999999999888876543333344566777777777653111  1


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------CCEE
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIV  321 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~l  321 (374)
                      +..++++++++++.+.|++.     ++.......+.++|+.++...   +..+++++|+ ++||.+.++.      .+++
T Consensus       293 ~~~~~~~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~v~~~~~~---~~~~l~~~ll~~~gi~v~~g~~f~~~~~~~~  364 (385)
T PRK09276        293 ELRKIYQERRDILVEGLRKL-----GLEVEPPKATFYVWAPVPKGY---TSAEFATLLLDKAGVVVTPGNGFGEYGEGYF  364 (385)
T ss_pred             HHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEECCCCC---CHHHHHHHHHHhCCEEECCchhhCCCCCCeE
Confidence            23344444455555555443     221112233566788776543   6788999987 4799999862      4799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 017259          322 RLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ||+++  .+++++.+++++|++
T Consensus       365 Ris~~--~~~~~l~~~l~~l~~  384 (385)
T PRK09276        365 RIALT--VPDERIEEAVERIKK  384 (385)
T ss_pred             EEEeC--CCHHHHHHHHHHHhh
Confidence            99954  577888888887753

>PLN00145 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.96  E-value=1.8e-26  Score=219.32  Aligned_cols=300  Identities=14%  Similarity=0.133  Sum_probs=192.0

Q ss_pred             CcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ++++.+++.+...+    ..+++++|+|+++|+..++..+     ..+|     |+|++.+|+|+.+...+...+.....
T Consensus        98 ~lr~aia~~~~~~~~~~~~~~~v~it~G~~~al~l~~~~l-----~~~G-----d~Vlv~~P~y~~y~~~~~~~g~~~~~  167 (430)
T PLN00145         98 PARRAIAEYLSRDLPYELSTDDIYLTAGCAQAIEIIMSVL-----AQPG-----ANILLPRPGYPLYEARAVFSGLEVRH  167 (430)
T ss_pred             HHHHHHHHHHhhccCCCCChhhEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCCccHHHHHHHcCCEEEE
Confidence            34444555444322    3468999999999999999988     4667     99999999998765444333322111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                      .. ..+. .++.    -|++++++.++   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.+
T Consensus       168 ~~-~~~~-~~~~----~d~~~l~~~~~---~~~~~i~i~~P~NPtG~v~-~~~~l~~i~~~a~~~~i~ii~De~Y~~~~~  237 (430)
T PLN00145        168 FD-LLPE-RGWE----VDLEGVEALAD---ENTVAMVIINPNNPCGSVY-SYEHLAKIAETARKLGILVIADEVYDHLTF  237 (430)
T ss_pred             ee-CCcc-cCCc----CCHHHHHHHhC---cCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEeccchhhcc
Confidence            10 0000 0111    17889988776   4678888888889999877 899999999999999999999999998754


Q ss_pred             cccCc-ccccCCCCCcE---EEeccccc-CCccchhhhee--CHHHHh------hcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          177 SGRML-ASDWEEVRPDM---VILGKALG-GGVIPVSAVLA--DKEVML------CIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       177 ~g~~~-~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~--~~~~~~------~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      .+..+ .....+....+   -||||.++ +|+ |+||+++  ++.+++      .+... .....+.+.+.|.++..+++
T Consensus       238 ~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pG~-RlG~iv~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~Q~a~~~~l~  315 (430)
T PLN00145        238 GSKPFVPMGVFGEVAPVLTLGSISKRWVVPGW-RLGWIATCDPNGILKETKVVDSIRNY-LNISTDPATFVQGAIPQIIA  315 (430)
T ss_pred             CCCCccchhhhcccCcEEEEeccccccCCCCe-eEEEEEEecchhhhhhhHHHHHHHHH-hcccCCCCHHHHHHHHHHHh
Confidence            44221 21111112223   38999966 799 9999886  333322      22221 22233557888888887776


Q ss_pred             HHhhhcH----HHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCC-c-hhHHHHHHHHH-HCCeEecc
Q 017259          244 VIRDEKL----AERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTAL-P-VSAYDICLKMK-ERGILAKP  315 (374)
Q Consensus       244 ~~~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~-~-~~~~~~~~~l~-~~Gi~v~~  315 (374)
                      .. .+++    .+.++++++.+.+.|+.    ++++... .+..+.|+|+.++.... + .+..+++..|+ ++||.+.|
T Consensus       316 ~~-~~~~~~~~~~~~~~~~~~~~~~L~~----~~g~~~~~~P~ga~y~~v~l~~~~~~~~~~~~~~~~~ll~~~gV~v~p  390 (430)
T PLN00145        316 NT-KEEFFTKTLGLLKETADICYEKIKE----IKCITCPHKPEGSMFVMVKLDLSCLSGIKDDMDFCCKLAKEESVVVLP  390 (430)
T ss_pred             cC-HHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCcCCCeeeEEEeccChhhcCCCCCHHHHHHHHHHhCCEEEeC
Confidence            31 1233    33444444444444433    3322212 24456777777653100 0 13566777665 56999988


Q ss_pred             C----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          316 T----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       316 ~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      +    ..+++||++.  .+.+++++++++|++++. ...
T Consensus       391 G~~fg~~~~lRis~~--~~~~~l~~al~rl~~~~~-~~~  426 (430)
T PLN00145        391 GSALGMKNWLRITFA--IDPPSLEDGLERLKSFCL-RHA  426 (430)
T ss_pred             ccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH-Hhc
Confidence            6    3689999955  578999999999999998 554

>PRK03158 histidinol-phosphate aminotransferase; Provisional

Probab=99.96  E-value=5.9e-27  Score=218.64  Aligned_cols=287  Identities=15%  Similarity=0.139  Sum_probs=195.5

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++.....++++.++++++  .+++++|+|+++++..++..+     .++|     |+|++.+|+|+++...+...+....
T Consensus        61 ~p~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~-----~~~g-----d~v~~~~p~y~~~~~~~~~~g~~~~  130 (359)
T PRK03158         61 YPDGYAPELRTKVAKHLGVDEEQLLFGAGLDEVIQMISRAL-----LNPG-----TNTVMAEPTFSQYRHNAIIEGAEVR  130 (359)
T ss_pred             CCCCcHHHHHHHHHHHhCCCHHHEEECCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCHHHHHHHHHHcCCeEE
Confidence            445567788888888875  458999999999999888877     4566     9999999999876554443322111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    .+.. +.    ..|++++++.++   ++++++++++++|++|.+. +.+.+.++++.|+ +|++||+||+|.++.
T Consensus       131 ~----~~~~-~~----~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~l~~~~~~~~-~~~~ii~De~y~~~~  196 (359)
T PRK03158        131 E----VPLK-DG----GHDLEAMLKAID---EQTKIVWICNPNNPTGTYV-NHEELLSFLESVP-SHVLVVLDEAYYEYV  196 (359)
T ss_pred             E----EecC-CC----CcCHHHHHHhcC---CCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCcEEEEECchHhhc
Confidence            1    0110 00    126888887775   4678888888899999888 5555555555553 699999999998764


Q ss_pred             cccc-CcccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259          176 RSGR-MLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL  250 (374)
Q Consensus       176 ~~g~-~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~  250 (374)
                      ..+. .......+..+.   +.||||.++ +|+ |+||+++++++++.+....  .+++.+.+++.++.++++.   .++
T Consensus       197 ~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~v~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~  270 (359)
T PRK03158        197 TAEDYPDTLPLLEKYENLIVLRTFSKAYGLAAL-RVGYGIASEELIEKLNIAR--PPFNTTRIAQYAAIAALED---QAF  270 (359)
T ss_pred             CCcccccHHHHHHhcCCEEEEEechHhhcCcch-hhehhcCCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhcC---HHH
Confidence            3322 111111111122   239999999 799 9999999999888886532  3477899999999888852   334


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----CCCEEEEecC
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----HDTIVRLTPP  326 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~~~~lRi~~~  326 (374)
                      .+++++..++.++.+.+....+ ++ ...++.|.++|+.++.     +..++++.|.++||.+.++    .++++||+  
T Consensus       271 ~~~~~~~~~~~~~~~~~~l~~~-~~-~~~~~~g~~i~~~~~~-----~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~--  341 (359)
T PRK03158        271 LKECVEKNAEGLEQYYAFCKEY-GL-FYYPSQTNFIFVDTGR-----DANELFEALLKKGYIVRSGAALGFPTGVRIT--  341 (359)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHC-CC-eeCCCcCcEEEEECCC-----CHHHHHHHHHHCCeEEeeCCCCCCCCeEEEe--
Confidence            4444333333333333333332 22 1234457788877642     4678999999999999985    36899999  


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDV  344 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~  344 (374)
                       ..+++++++++++|+++
T Consensus       342 -~~~~~~~~~l~~al~~~  358 (359)
T PRK03158        342 -IGLKEQNDKIIELLKEL  358 (359)
T ss_pred             -cCCHHHHHHHHHHHHHh
Confidence             44889999999999875

>COG1168 MalY Bifunctional PLP-dependent enzyme with beta-cystathionase and maltose regulon repressor activities [Amino acid transport and metabolism]

Probab=99.96  E-value=3.2e-26  Score=201.84  Aligned_cols=321  Identities=16%  Similarity=0.189  Sum_probs=227.3

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      ++|++++++.+.+.++....+....+..+.++.+    ..+++.++++.--++..+++.+     .++|     |.|++.
T Consensus        44 ~~Al~~rvdhGvfGY~~~~~~~~~ai~~w~~~r~~~~i~~e~i~~~p~VVpgi~~~I~~~-----T~~g-----d~Vvi~  113 (388)
T COG1168          44 IEALRERVDHGVFGYPYGSDELYAAIAHWFKQRHQWEIKPEWIVFVPGVVPGISLAIRAL-----TKPG-----DGVVIQ  113 (388)
T ss_pred             HHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEcCcchHhHHHHHHHh-----CcCC-----CeeEec
Confidence            3677788877777666454557777888888866    4468999999999999999999     6778     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      .|.|+........-    +......|+..+...... |.++||+++.+  ++++++++++++||+|.+- ++++|.+|.+
T Consensus       114 tPvY~PF~~~i~~n----~R~~i~~pL~~~~~~y~i-D~~~LE~~~~~--~~vkl~iLCnPHNP~Grvw-t~eeL~~i~e  185 (388)
T COG1168         114 TPVYPPFYNAIKLN----GRKVIENPLVEDDGRYEI-DFDALEKAFVD--ERVKLFILCNPHNPTGRVW-TKEELRKIAE  185 (388)
T ss_pred             CCCchHHHHHHhhc----CcEEEeccccccCCcEEe-cHHHHHHHHhc--CCccEEEEeCCCCCCCccc-cHHHHHHHHH
Confidence            99997654332221    222222222211111111 89999999985  4678999999999998655 9999999999


Q ss_pred             HHHhcCCEEEEeccccCCcccc-cCcccccC--CCCCcE---EEeccccc-CCccchhhhe-eCHHHHhhcCC-CCCCCC
Q 017259          157 LCSKYNILMIADEIQSGLARSG-RMLASDWE--EVRPDM---VILGKALG-GGVIPVSAVL-ADKEVMLCIQP-GEHGST  227 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~~~~g-~~~~~~~~--~~~~d~---~s~sK~~~-~G~~~~G~~~-~~~~~~~~~~~-~~~~~~  227 (374)
                      +|.+||+.||+||+|+++...| +.+.+...  ......   .+-||++. +|+ .+++++ .++++..++.. ......
T Consensus       186 lc~kh~v~VISDEIHaDlv~~g~~h~~~a~ls~~~a~~~it~~saSKtFNlaGL-~~a~~Ii~n~~lr~~~~~~l~~~~~  264 (388)
T COG1168         186 LCLRHGVRVISDEIHADLVLGGHKHIPFASLSERFADNSITLTSASKTFNLAGL-KCAYIIISNRELRAKFLKRLKRNGL  264 (388)
T ss_pred             HHHHcCCEEEeecccccccccCCCccchhhcChhhhcceEEEeeccccccchhh-hheeEEecCHHHHHHHHHHHHHhcC
Confidence            9999999999999999987667 33332211  111122   24479998 788 888855 56665444432 223445


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEeccCCCchhHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICL  304 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~  304 (374)
                      ..+|.+++.|..++.+..+..  ++.+.++++.+++.+.+.+.   +| .+..+.++|.|. |+++...  +.+..++.+
T Consensus       265 ~~~n~lg~~A~~aAY~~G~~WLd~L~~yl~~N~~~~~~~l~~~---~P-~v~v~~p~gTYL~WLD~r~l--~l~d~~l~~  338 (388)
T COG1168         265 HGPSALGIIATEAAYNQGEPWLDELLEYLKDNRDYVADFLNKH---LP-GVKVTEPQGTYLAWLDCREL--GLDDSELAE  338 (388)
T ss_pred             CCCchHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHhh---CC-CcEEecCCCceeeeeecccc--CCChHHHHH
Confidence            577999999999999875442  56667777777777766655   34 455555665554 5566443  235578888


Q ss_pred             HHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|+++ +|.+.++      +.+++|++  +.++.+.+++++++|+++++ .+
T Consensus       339 ~ll~~akVal~~G~~FG~~g~gf~RlN--~acpr~~L~eal~ri~~al~-~~  387 (388)
T COG1168         339 FLLEEAKVALSPGSTFGEEGSGFVRLN--FACPRAILEEALERLKRALK-KR  387 (388)
T ss_pred             HHHHhhcEeccCCCccCcCCCceEEEe--cCCCHHHHHHHHHHHHHHHh-cc
Confidence            88865 7777665      46999999  78999999999999999987 53

>PLN02483 serine palmitoyltransferase

Probab=99.95  E-value=2.8e-26  Score=220.41  Aligned_cols=327  Identities=16%  Similarity=0.154  Sum_probs=223.5

Q ss_pred             hHHHHHHHhcccc--CcC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLS--SRA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+....  ++.   +..+.++++++.+++++|.+..++.++|+.++..++.++     .++|     |.|++.
T Consensus       122 ~~~~~ai~~~g~~~~~sr~~~g~~~~~~ele~~lA~~~g~~~ai~~~~G~~an~~~i~al-----~~~G-----d~Vi~d  191 (489)
T PLN02483        122 PRVIESLKKYSASTCSSRVDGGTTKLHRELEELVARFVGKPAAIVFGMGYATNSTIIPAL-----IGKG-----GLIISD  191 (489)
T ss_pred             HHHHHHHHHhCCCCCccccccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh-----CCCC-----CEEEEc
Confidence            4566666663321  222   457889999999999999888888888888888777776     6677     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc----CC------cEEEEEEccccCCCCcccC
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES----GD------QIAGFLFEPIQGEAGVIIP  146 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~----~~------~~~~vi~~~~~~~~g~~~~  146 (374)
                      +++|++....+...+             ..+..++++|++++++.+++.    .+      +..+++++++.++.|.+.+
T Consensus       192 ~~~h~s~~~~~~~~G-------------a~v~~~~~~d~~~le~~l~~~i~~~~p~t~~p~~k~livve~v~s~~G~~~~  258 (489)
T PLN02483        192 SLNHNSIVNGARGSG-------------ATIRVFQHNTPSHLEEVLREQIAEGQPRTHRPWKKIIVIVEGIYSMEGELCK  258 (489)
T ss_pred             chhhHHHHHHHHHcC-------------CeEEEEeCCCHHHHHHHHHhhhhccccccccCCceEEEEECCCCCCCCcccC
Confidence            999876544432221             345566677888888877631    01      1347778888899999988


Q ss_pred             ChhHHHHHHHHHHhcCCEEEEecccc-C-CcccccCcccccCCCC---CcEE--EecccccCCccchhhheeCHHHHhhc
Q 017259          147 PDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVR---PDMV--ILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       147 ~~~~l~~l~~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~~---~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                          +++|.++|++||++||+||+|+ + ++..|.. .....+..   .|++  ||||++++   .+||+++++++++.+
T Consensus       259 ----l~~I~~la~~~~~~livDEa~s~g~~G~~G~g-~~~~~~v~~~~~dI~~~SfSKs~g~---~GG~i~~~~~li~~l  330 (489)
T PLN02483        259 ----LPEIVAVCKKYKAYVYLDEAHSIGAVGKTGRG-VCELLGVDPADVDIMMGTFTKSFGS---CGGYIAGSKELIQYL  330 (489)
T ss_pred             ----HHHHHHHHHHcCCEEEEECcCccCccCCCCCc-hHHhcCCCcccCcEEEEecchhccc---CceEEEcCHHHHHHH
Confidence                9999999999999999999998 2 3444433 22333332   3454  99999973   347788999999988


Q ss_pred             CCCCCCCCC--CCCHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          220 QPGEHGSTF--GGNPLASAVAIASLDVIRDE-------KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       220 ~~~~~~~~~--~~~~~~~~aa~~al~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      +.......+  +.++..++++.++++.+..+       +..++++++.+++++.|++++..   +..  ...+.++++.+
T Consensus       331 ~~~~~~~~~~~~~~p~~~~~~~aaL~~l~~~~g~~~~~~~~~~l~~~~~~l~~~L~~~G~~---v~~--~~~sp~~~l~l  405 (489)
T PLN02483        331 KRTCPAHLYATSMSPPAVQQVISAIKVILGEDGTNRGAQKLAQIRENSNFFRSELQKMGFE---VLG--DNDSPVMPIML  405 (489)
T ss_pred             HHhCccccccCCcCHHHHHHHHHHHHHHHhCccccchHHHHHHHHHHHHHHHHHHHHCCCc---ccC--CCCCCEEEEEE
Confidence            765443333  34666666777888765421       34567777888888888775211   111  11234555544


Q ss_pred             ccCCCchhHHHHHHHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCCC
Q 017259          291 DKTALPVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPAT  363 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  363 (374)
                      ....   ...++++.|+++||.+.+.       ..+.+||+++..++++++++++++|+++++ .+ ... +.+...++.
T Consensus       406 ~~~~---~~~~~~~~Ll~~GI~v~~~~fp~~p~~~~~vRi~isa~~t~edId~~l~~L~~~~~-~~-~~~-~~~~~~~~~  479 (489)
T PLN02483        406 YNPA---KIPAFSRECLKQNVAVVVVGFPATPLLLARARICISASHSREDLIKALEVISEVGD-LV-GIK-YFPAEPKKQ  479 (489)
T ss_pred             CCHH---HHHHHHHHHHHCCcEEeeeCCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHHHHH-Hh-Cce-eccCCCCcc
Confidence            3322   5668999999999999742       236899999999999999999999999988 54 222 333444444


Q ss_pred             CCccccc
Q 017259          364 PCHRCGR  370 (374)
Q Consensus       364 ~~~~~~~  370 (374)
                      .-+.|.+
T Consensus       480 ~~~~~~~  486 (489)
T PLN02483        480 EQVKKFI  486 (489)
T ss_pred             hhhhhcc
Confidence            3334433

>PRK05942 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.2e-26  Score=218.95  Aligned_cols=292  Identities=15%  Similarity=0.189  Sum_probs=192.7

Q ss_pred             CcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++++.+.++    .+ .+++|+|+++++..++.++     ..+|     |+|++.+|+|.++...+...+....
T Consensus        77 ~lr~aia~~~~~~~~~~~~~~~~i~vt~G~~~al~~~~~~~-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~~~  146 (394)
T PRK05942         77 SFRQAITDWYHRRYGVELDPDSEALPLLGSKEGLTHLALAY-----VNPG-----DVVLVPSPAYPAHFRGPLIAGAQIY  146 (394)
T ss_pred             HHHHHHHHHHHHHHCCCcCCCCeEEEccChHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHHcCCEEE
Confidence            344445555544323    44 4889999999999998877     5677     9999999999876554433322111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    .++..+.. . ..|++++++.+.   ++++++++++++||+|.+. +++.+++|.++|++||++||+||+|.++.
T Consensus       147 ~----v~~~~~~~-~-~~d~~~l~~~~~---~~~k~i~l~~P~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~~~  216 (394)
T PRK05942        147 P----IILKPEND-W-LIDLSSIPEEVA---QQAKILYFNYPSNPTTATA-PREFFEEIVAFARKYEIMLVHDLCYAELA  216 (394)
T ss_pred             E----eecCCccC-C-ccCHHHHHHhcc---ccceEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHcCeEEEEeccchhhc
Confidence            1    01110000 0 026888888776   4789999988899999877 89999999999999999999999999775


Q ss_pred             ccccC-cccc-cC---CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          176 RSGRM-LASD-WE---EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       176 ~~g~~-~~~~-~~---~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      +.+.. .... ..   +....+.||||.++ +|+ |+||+++++++++.++.......++.+.+++.++.++++...+  
T Consensus       217 ~~~~~~~~~~~~~~~~~~~i~~~SfSK~~~~~Gl-RiG~i~~~~~l~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~  295 (394)
T PRK05942        217 FDGYQPTSLLEIPGAKDIGVEFHTLSKTYNMAGW-RVGFVVGNRHIIQGLRTLKTNLDYGIFSALQKAAETALQLPDSYL  295 (394)
T ss_pred             cCCCCCCChhhCCCccccEEEEecchhccCChhh-heeeeecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCcHHHH
Confidence            44421 1111 11   11223458999997 799 9999999999998887654445667778888888888763221  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------CCE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTI  320 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~  320 (374)
                      ++..++++++.+.+.+.|+..     ++.......+.++|+.++...   +..++..+++ ++||.+.++.      .++
T Consensus       296 ~~~~~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~f~~~~~~~~~---~~~~~~~~~l~~~gV~v~~g~~f~~~~~~~  367 (394)
T PRK05942        296 QQVQERYRTRRDFLIQGLGEL-----GWNIPPTKATMYLWVPCPVGM---GSTDFALNVLQKTGVVVTPGNAFGEGGEGY  367 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CCeecCCCeeeEEEEECCCCC---CHHHHHHHHHHHCCEEEeCChhhCcCCCCe
Confidence            133444555555555555432     222112234568888886543   4667777655 6899998752      579


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +|++++  .+.+.+.+++++|.+
T Consensus       368 iRis~~--~~~~~l~~~l~~l~~  388 (394)
T PRK05942        368 VRISLI--ADCDRLGEALDRLKQ  388 (394)
T ss_pred             EEEEec--CCHHHHHHHHHHHHH
Confidence            999964  445556666665543

>PRK08912 hypothetical protein; Provisional

Probab=99.95  E-value=2.3e-26  Score=216.71  Aligned_cols=297  Identities=19%  Similarity=0.201  Sum_probs=197.7

Q ss_pred             CCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           20 NDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++++.+++++.+.+|    .+ ++++|+|+++++..++..+     .++|     |+|++..|+|..+...+...+...
T Consensus        66 ~~lr~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~  135 (387)
T PRK08912         66 PELRQAVAAHYARFQGLDLDPETEVMVTSGATEALAAALLAL-----VEPG-----DEVVLFQPLYDAYLPLIRRAGGVP  135 (387)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcccEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhhHHHHHHcCCEE
Confidence            3444555555554333    45 8999999999999888877     5567     999999999977665544333221


Q ss_pred             cccccCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...    +... +..    .|++++++.+.   ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|.+
T Consensus       136 ~~~----~~~~~~~~----~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-s~~~~~~i~~~~~~~~~~ii~De~y~~  203 (387)
T PRK08912        136 RLV----RLEPPHWR----LPRAALAAAFS---PRTKAVLLNNPLNPAGKVF-PREELALLAEFCQRHDAVAICDEVWEH  203 (387)
T ss_pred             EEE----ecCcccCc----CCHHHHHHHhC---ccceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCeEEEEhhhhhh
Confidence            111    1100 000    16888888876   4678888888899999877 799999999999999999999999987


Q ss_pred             CcccccCc-c-cccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          174 LARSGRML-A-SDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       174 ~~~~g~~~-~-~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      +.+.+..+ . ....+....   +.||||.++ +|+ |+||+++++++++.+........++.++..+.++.+++....+
T Consensus       204 ~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~l~~~~~  282 (387)
T PRK08912        204 VVFDGRRHIPLMTLPGMRERTVKIGSAGKIFSLTGW-KVGFVCAAPPLLRVLAKAHQFLTFTTPPNLQAAVAYGLGKPDD  282 (387)
T ss_pred             cccCCCCCcChhhCCCccCceEEEeechhhccCcCc-eeEEEecCHHHHHHHHHHHhhccccCChHHHHHHHHHHhCCHH
Confidence            64433211 1 111122122   338999999 899 9999999999888876543444566666677777666642111


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC-------
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH-------  317 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-------  317 (374)
                        ++..++++++.+.+.+.|+..     ++.......+.++|+.++......+..++++.|+ ++||.+.|+.       
T Consensus       283 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~g~~~l~~~l~~~~~~~~~~~~~~~l~~~~gV~v~pg~~f~~~~~  357 (387)
T PRK08912        283 YFEGMRADLARSRDRLAAGLRRI-----GFPVLPSQGTYFLTVDLAPLGLAEDDVAFCRRLVEEAGVAAIPVSAFYEEDP  357 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEecccccCCCCCHHHHHHHHHhcCCEEEecchhhCCCCC
Confidence              133445555555555555443     2211112235667777764110115678999986 5799998842       


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .+++|++++  ..++++++++++|+++++
T Consensus       358 ~~~~iRl~~~--~~~~~l~~~l~rl~~~l~  385 (387)
T PRK08912        358 VTSVVRFCFA--KRDATLDEAVERLAAARR  385 (387)
T ss_pred             CCCEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence             479999955  468999999999998876

>PRK05664 threonine-phosphate decarboxylase; Reviewed

Probab=99.95  E-value=1.8e-26  Score=212.48  Aligned_cols=270  Identities=15%  Similarity=0.159  Sum_probs=192.6

Q ss_pred             HHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCC
Q 017259           24 PVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL  103 (374)
Q Consensus        24 ~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  103 (374)
                      .+|.+.++++++.+++++|+|+++++..++.       ..+|     |+|++.+|+|.++...+...+.           
T Consensus        52 ~~Lr~~ia~~~~~~~I~it~Gs~~al~~~~~-------~~~g-----d~v~v~~P~y~~~~~~~~~~g~-----------  108 (330)
T PRK05664         52 DGLEAAARAYYGAPQLLPVAGSQAAIQALPR-------LRAP-----GRVGVLSPCYAEHAHAWRRAGH-----------  108 (330)
T ss_pred             HHHHHHHHHHhCCCCEEECcCHHHHHHHHHH-------ccCC-----CEEEEcCCChHHHHHHHHHcCC-----------
Confidence            7899999999999999999999999987642       3567     9999999999877665554432           


Q ss_pred             CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCccc
Q 017259          104 LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS  183 (374)
Q Consensus       104 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~  183 (374)
                        ++..++   ++++++.++    +++++++++++||||.+. +.+.+++|.++|+++|++||+||+|.++......  .
T Consensus       109 --~~~~v~---~~~~~~~~~----~~~~v~l~nP~NPTG~~~-s~~~l~~l~~~~~~~~~~iI~DE~y~~~~~~~s~--~  176 (330)
T PRK05664        109 --QVRELD---EAEVEAALD----SLDVLVVVNPNNPTGRRF-DPARLLAWHARLAARGGWLVVDEAFMDNTPQHSL--A  176 (330)
T ss_pred             --eEEEec---hhhHhhhhc----CCCEEEEeCCcCCCCCcc-CHHHHHHHHHHHHhcCCEEEEECCcccCCCcccc--c
Confidence              222333   345666654    455666666678999887 8999999999999999999999999876321111  1


Q ss_pred             ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHH
Q 017259          184 DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLG  258 (374)
Q Consensus       184 ~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~  258 (374)
                      .. .-.++   +-||||.++ +|+ |+||+++++++.+.+...  ..++..+.+++.++.++++.... +..++.+++++
T Consensus       177 ~~-~~~~~vi~~~SfSK~~gl~Gl-RiG~~v~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~r  252 (330)
T PRK05664        177 AC-AHRPGLIVLRSFGKFFGLAGA-RLGFVLAEPALLRALAEL--LGPWTVSGPTRWLAQAALADTPWQRRQRERLLAAS  252 (330)
T ss_pred             cc-ccCCCEEEEeeccccccCCCc-ceEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            11 11233   339999999 899 999999999998888753  23456678888888888763211 23445555555


Q ss_pred             HHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC-CCCEEEEecCCCCCHHHHHHH
Q 017259          259 EELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEG  337 (374)
Q Consensus       259 ~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-~~~~lRi~~~~~~~~e~i~~~  337 (374)
                      +++.+.|++.     ++. ...+.+.++|+.++      +..++.+.|.++||.++.. ..+++||+++  .+.++++++
T Consensus       253 ~~l~~~L~~~-----~~~-~~~~~~~f~~~~~~------~~~~~~~~l~~~gi~v~~f~~~~~iRis~~--~~~~~~~~l  318 (330)
T PRK05664        253 QRLAALLRRH-----GLT-PAGGCALFQWVRTE------DAAALHEFLARRGILTRLFEQPASLRFGLP--ADEADWARL  318 (330)
T ss_pred             HHHHHHHHHC-----CCc-ccCCcceEEEEecC------CHHHHHHHHHHCCeEEEECCCCCeEEEECC--CCHHHHHHH
Confidence            6666655543     221 12233466676543      4688999999999999875 3689999944  367889999


Q ss_pred             HHHHHHHHh
Q 017259          338 SKALHDVLE  346 (374)
Q Consensus       338 ~~~l~~~~~  346 (374)
                      .++|+++.+
T Consensus       319 ~~al~~~~~  327 (330)
T PRK05664        319 DQALLAYRK  327 (330)
T ss_pred             HHHHHHHHh
Confidence            999988776

>PLN00143 tyrosine/nicotianamine aminotransferase; Provisional

Probab=99.95  E-value=3.1e-26  Score=216.90  Aligned_cols=304  Identities=16%  Similarity=0.148  Sum_probs=192.9

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+.+    ..+++++|+|+++++..+++++     ..+|     |.|++..|+|+++...+...+..
T Consensus        75 G~~~lr~aia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~v~v~~P~y~~~~~~~~~~g~~  144 (409)
T PLN00143         75 GILPARRAIADYLSNDLPYQLSPDDVYLTLGCKHAAEIIIKVL-----ARPE-----ANILLPRPGFPDVETYAIFHHLE  144 (409)
T ss_pred             CCHHHHHHHHHHHHhhcCCCCCHhhEEEecChHHHHHHHHHHH-----cCCC-----CEEEEcCCCCcCHHHHHHHcCCE
Confidence            44445555666665533    4468999999999999999988     5667     99999999998775544433321


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ....    +....- ... .|+++++++++   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.+
T Consensus       145 ~~~~----~~~~~~-~~~-~d~~~l~~~~~---~~~~~~~~~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y~~  214 (409)
T PLN00143        145 IRHF----DLLPEK-GWE-VDLDAVEAIAD---ENTIAMVIINPGNPCGSVY-SYEHLNKIAETARKLGILVIADEVYGH  214 (409)
T ss_pred             EEEE----eccCCC-CCc-CCHHHHHHhcc---cCCEEEEEECCCCCCCCcc-CHHHHHHHHHHHHHcCCeEEEEccccc
Confidence            1111    110000 000 27899988775   3567777777789999887 899999999999999999999999998


Q ss_pred             CcccccCc-ccccCCCCCcE---EEeccccc-CCccchhhheeC--HHHH------hhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          174 LARSGRML-ASDWEEVRPDM---VILGKALG-GGVIPVSAVLAD--KEVM------LCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       174 ~~~~g~~~-~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~--~~~~------~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      +.+.+..+ ......-...+   .||||.++ +|+ |+||++++  +.+.      +.+........+ .+.+++.++.+
T Consensus       215 l~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGl-RvG~~v~~~p~~~~~~~~~~~~~~~~~~~~~~-~~~~~q~a~~~  292 (409)
T PLN00143        215 IVFGSKPFVPMGLFASIVPVITLGSISKRWMIPGW-GLGWLVTCDPSGLLQICEIADSIKKALNPAPF-PPTFIQAAIPE  292 (409)
T ss_pred             cccCCCCCcchhhhcccCcEEEEccchhhcCCCcc-ceEEEEeeCchhhhhhHHHHHHHHHHHhccCC-CCchHHHHHHH
Confidence            75544321 11112112222   38999966 799 99999873  3332      222221111222 46778888877


Q ss_pred             HHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCC-c-hhHHHHHHHH-HHCCeEe
Q 017259          241 SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTAL-P-VSAYDICLKM-KERGILA  313 (374)
Q Consensus       241 al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~-~-~~~~~~~~~l-~~~Gi~v  313 (374)
                      +++....   ++..+++++..+++.+.|++    ++..... .+..|.|+|+.++.... + .+..+++..+ .++||.+
T Consensus       293 ~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~----~~~~~~~~~p~gg~f~w~~l~~~~~~~~~~~~~~~~~ll~~~gV~v  368 (409)
T PLN00143        293 ILEKTTEDFFSKTINILRAALAFCYDKLKE----IPCIMCPQKAEGAFFALVKLNLLLLEDIEDDMEFCLKLAKEESLII  368 (409)
T ss_pred             HHhcChHHHHHHHHHHHHHHHHHHHHHHhc----CCCCCCCCCCCeeEEEEEecchhhcCCCCCHHHHHHHHHHhCCEEE
Confidence            7753111   12334444444444444433    2212211 23357888888863100 0 0345666554 6789999


Q ss_pred             ccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          314 KPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       314 ~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .|+.    .+++||+++  .+++++++++++|+++++ ...
T Consensus       369 ~pg~~f~~~~~iRi~~~--~~~~~l~~al~rl~~~l~-~~~  406 (409)
T PLN00143        369 LPGVTVGLKNWLRITFA--VEQSSLEDGLGRLKSFCG-RHA  406 (409)
T ss_pred             eCccccCCCCeEEEEEc--CCHHHHHHHHHHHHHHHH-Hhc
Confidence            9863    689999955  578999999999999987 543

>PLN02656 tyrosine transaminase

Probab=99.95  E-value=3.8e-26  Score=216.36  Aligned_cols=300  Identities=15%  Similarity=0.120  Sum_probs=192.2

Q ss_pred             CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ....++++.+++++        ..+++++|+|+++|+..++.++     ..+|     |+|++.+|+|..+.......+.
T Consensus        73 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~  142 (409)
T PLN02656         73 VGLPQARRAIAEYLSRDLPYKLSLDDVFITSGCTQAIDVALSML-----ARPG-----ANILLPRPGFPIYELCAAFRHL  142 (409)
T ss_pred             CCCHHHHHHHHHHHHHhcCCCCCcccEEEeCChHHHHHHHHHHH-----hCCC-----CeEEEeCCCCCcHHHHHHHcCC
Confidence            33444555555543        3468999999999999999887     4567     9999999999665433332222


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +...+- .. ..|+++++++++   ++++++++++++|++|.+. +++.+++|+++|++||++||+||+|.
T Consensus       143 ~~~~i----~~~~~~-~~-~~d~~~l~~~~~---~~~~~v~l~~P~NPtG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~  212 (409)
T PLN02656        143 EVRYV----DLLPEK-GW-EVDLDAVEALAD---QNTVALVIINPGNPCGNVY-SYQHLKKIAETAEKLKILVIADEVYG  212 (409)
T ss_pred             EEEEE----eCCCcC-CC-CCCHHHHHHHhc---cCceEEEEECCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEehhhh
Confidence            11111    110000 00 027888888776   4577777777888999887 89999999999999999999999999


Q ss_pred             CCcccccCc-ccccCCCCCc---EEEeccccc-CCccchhhheeC--------HHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          173 GLARSGRML-ASDWEEVRPD---MVILGKALG-GGVIPVSAVLAD--------KEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       173 ~~~~~g~~~-~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      ++.+.+..+ .....+....   +-||||.++ +|+ |+||++++        +++++.+..... ...+.+.+++.++.
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~f~~pGl-RiG~~i~~~~~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~a~~  290 (409)
T PLN02656        213 HLAFGSNPFVPMGVFGSIVPVLTLGSLSKRWIVPGW-RLGWFVTTDPSGSFRDPKIVERIKKYFD-ILGGPATFIQAAVP  290 (409)
T ss_pred             hcccCCCCcccHHHhcccCcEEEEcccchhccCcce-eEEEEEEeCcccccccHHHHHHHHHHHh-hhcCCCHHHHHHHH
Confidence            875544321 1111111112   338999966 799 99999873        467666653212 12356788888888


Q ss_pred             HHHHHHhhhcHH----HHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCC-c-hhHHHH-HHHHHHCCe
Q 017259          240 ASLDVIRDEKLA----ERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTAL-P-VSAYDI-CLKMKERGI  311 (374)
Q Consensus       240 ~al~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~-~-~~~~~~-~~~l~~~Gi  311 (374)
                      ++++... +++.    ++++++++.+.+.|+.    ++..... .+..|.++|+.++.... . .+..++ .+.|.++||
T Consensus       291 ~~l~~~~-~~~~~~~~~~~~~~r~~~~~~L~~----~~~~~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~l~~~gV  365 (409)
T PLN02656        291 TILEQTD-ESFFKKTINILKQSSDICCDRIKE----IPCITCPHKPEGSMAVMVKLNLSLLEDISDDIDFCFKLAREESV  365 (409)
T ss_pred             HHHhcCc-HHHHHHHHHHHHHHHHHHHHHHhh----CCCCcCCcCCCeEEEEEEecchhhcCCCCCHHHHHHHHHHhCCE
Confidence            8886321 2233    3344444444444433    3222111 23346778887752100 0 023344 466678899


Q ss_pred             EeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          312 LAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       312 ~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .+.|+.    .+++||++.  .+++++++++++|++++. ...
T Consensus       366 ~v~pg~~fg~~~~iRi~~~--~~~e~l~eal~rl~~~~~-~~~  405 (409)
T PLN02656        366 IILPGTAVGLKNWLRITFA--ADPSSLEEALGRIKSFYL-RHS  405 (409)
T ss_pred             EEecchhcCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH-Hhc
Confidence            999863    589999965  478999999999999887 544

>PRK08175 aminotransferase; Validated

Probab=99.95  E-value=3.8e-26  Score=215.68  Aligned_cols=295  Identities=12%  Similarity=0.175  Sum_probs=201.1

Q ss_pred             CCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           20 NDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++++.+++.+.+.+|    .+ ++++|+|+++++..++..+     .++|     |+|++.+|+|..+...+...+.. 
T Consensus        70 ~~lr~aia~~~~~~~g~~~~~~~~i~~t~G~~~~l~~~~~~~-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~-  138 (395)
T PRK08175         70 PRLRRAISRWYQDRYDVDIDPESEAIVTIGSKEGLAHLMLAT-----LDHG-----DTVLVPNPSYPIHIYGAVIAGAQ-  138 (395)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCCCcEEEccCcHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHHcCCe-
Confidence            3344455555554332    34 6999999999999888777     5677     99999999997765544433221 


Q ss_pred             cccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           95 EAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                                  +..++.    .+.+++++++++..++++++++++++|++|.+. +.+.+++|.++|++||++||+||+
T Consensus       139 ------------~~~v~~~~~~~~~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~i~ii~De~  205 (395)
T PRK08175        139 ------------VRSVPLVEGVDFFNELERAIRESYPKPKMMILGFPSNPTAQCV-ELEFFEKVVALAKRYDVLVVHDLA  205 (395)
T ss_pred             ------------EEEEecccCCCcHHHHHHHHhhccCCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCcEEEEecc
Confidence                        112221    147888888876555788999888888999777 899999999999999999999999


Q ss_pred             ccCCcccccCc-cc-ccCCCC---CcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRML-AS-DWEEVR---PDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       171 ~~~~~~~g~~~-~~-~~~~~~---~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |.++.+.+... .. ...+..   ..+.||||.++ +|+ |+||+++++++++.+........++.+.+.+.++..+++.
T Consensus       206 y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~pGl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  284 (395)
T PRK08175        206 YADIVYDGWKAPSIMQVPGAKDVAVEFFTLSKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG  284 (395)
T ss_pred             hHhhccCCCCCcchhcCCCcccCEEEEeeccccccCcch-hheeeeCCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhC
Confidence            99765443221 11 111111   12348999997 799 9999999999988887544444566677777777777753


Q ss_pred             Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC----
Q 017259          245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----  317 (374)
Q Consensus       245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----  317 (374)
                      ...  +.+.+.++++.+++.+.|+..     +.....+..|.++|+.+++.....+..+++..|+ ++||.+.++.    
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~~p~~g~~i~i~l~~~~~~~~~~~~~~~l~~~~gv~v~p~~~f~~  359 (395)
T PRK08175        285 DQQCVRDIAEQYKRRRDVLVKGLHEA-----GWMVEMPKASMYVWAKIPEPYAAMGSLEFAKKLLNEAKVCVSPGIGFGD  359 (395)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCEEEEEEEECCcccCCCCHHHHHHHHHHhCCEEEeCchhhCc
Confidence            111  123344444455555555443     2222223468899998875421113678888776 6799998862    


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+++||++.  .+++.+.+++++|.++++
T Consensus       360 ~~~~~lRis~~--~~~~~~~~al~~l~~~l~  388 (395)
T PRK08175        360 YGDTHVRFALI--ENRDRIRQAIRGIKAMFR  388 (395)
T ss_pred             CCCCeEEEEeC--CCHHHHHHHHHHHHHHHH
Confidence              468999954  578999999999999887

>TIGR00858 bioF 8-amino-7-oxononanoate synthase

Probab=99.95  E-value=3.6e-26  Score=213.54  Aligned_cols=301  Identities=19%  Similarity=0.217  Sum_probs=207.5

Q ss_pred             hHHHHHHHhccccC-----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS-----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+.....     ..+..+...++++.++++++.+..+++++|++++..+++.+     .++|     |+|++.
T Consensus        37 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~~G~~~~~~~l~~~-----~~~g-----d~v~~~  106 (360)
T TIGR00858        37 QAAQQGAEQYGAGSTASRLVSGNSPLHEELEEELAEWKGTEAALLFSSGYLANVGVISAL-----VGKG-----DLILSD  106 (360)
T ss_pred             HHHHHHHHhcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCCEEEECchHHHHHHHHHHh-----CCCC-----CEEEEE
Confidence            45666665522211     12335678889999999887777777777788888777665     4567     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +++|........ ..+            ..+..++..|++++++.++.+. ++++++++.++++++|...+    +++|.
T Consensus       107 ~~~~~~~~~~~~-~~g------------~~~~~~~~~d~~~l~~~~~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~  169 (360)
T TIGR00858       107 ALNHASLIDGCR-LSG------------ARVRRYRHNDVEHLERLLEKNRGERRKLIVTDGVFSMDGDIAP----LPQLV  169 (360)
T ss_pred             ccccHHHHHHHH-hcC------------CceEEecCCCHHHHHHHHHHcccCCCeEEEEeCCccCCCCCcC----HHHHH
Confidence            888754433322 211            2233344568999999987643 35788888888888998887    99999


Q ss_pred             HHHHhcCCEEEEeccccCC--cccccCcccccCCCCCc-----EEEecccccCCccchhhheeCHHHHhhcCCCCCC--C
Q 017259          156 DLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPD-----MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--S  226 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~~~d-----~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~  226 (374)
                      ++|+++|++||+||+|+.+  +..+.. .....++.++     +.|+||++++   ++||+++++++.+.+......  .
T Consensus       170 ~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~~~i~i~s~sK~~~~---~gG~~~~~~~~~~~~~~~~~~~~~  245 (360)
T TIGR00858       170 ALAERYGAWLMVDDAHGTGVLGEDGRG-TLEHFGLKPEPVDIQVGTLSKALGS---YGAYVAGSQALIDYLINRARTLIF  245 (360)
T ss_pred             HHHHHcCcEEEEECcccccCcCCCCCc-hHHhcCCCccCCcEEEEechhhhhc---cCcEEEcCHHHHHHHHHhCcccee
Confidence            9999999999999999732  111111 1122233222     4589999874   337788888887776532222  2


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          227 TFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +.+.++..++++.++++.... ++..++++++.+++.+.|+++.  + ..   ..+.+.++|+.++...   +..++.+.
T Consensus       246 ~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~---~~~~~~~~~~~~~~~~---~~~~~~~~  316 (360)
T TIGR00858       246 STALPPAVAAAALAALELIQEEPWRREKLLALIARLRAGLEALG--F-TL---MPSCTPIVPVIIGDNA---SALALAEE  316 (360)
T ss_pred             cCCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHcC--C-cc---CCCCCCEEEEEeCCHH---HHHHHHHH
Confidence            334566667777888876543 2567888888888888887752  1 11   1235678888775432   57789999


Q ss_pred             HHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          306 MKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       306 l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      |.++||.+.+.       +.+++|++++..++++++++++++|+
T Consensus       317 l~~~gI~v~~~~~~~~~~~~~~iRis~~~~~~~~~i~~~l~~l~  360 (360)
T TIGR00858       317 LQQQGIFVGAIRPPTVPAGTSRLRLTLSAAHTPGDIDRLAEALK  360 (360)
T ss_pred             HHHCCeeEeeeCCCCCCCCCceEEEEEcCCCCHHHHHHHHHhhC
Confidence            99999999642       24689999998899999999999873

This model represents 8-amino-7-oxononanoate synthase, the BioF protein of biotin biosynthesis. This model is based on a careful phylogenetic analysis to separate members of this family from 2-amino-3-ketobutyrate and other related pyridoxal phosphate-dependent enzymes. In several species, including Staphylococcus and Coxiella, a candidate 8-amino-7-oxononanoate synthase is confirmed by location in the midst of a biotin biosynthesis operon but scores below the trusted cutoff of this model.

>TIGR01825 gly_Cac_T_rel pyridoxal phosphate-dependent acyltransferase, putative

Probab=99.95  E-value=4.7e-26  Score=214.68  Aligned_cols=305  Identities=15%  Similarity=0.186  Sum_probs=210.3

Q ss_pred             hHHHHHHHhccc-cC----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL-SS----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+... ..    ..+..+++++++++++++++.+..++.++|++++..++..+     ..+|     |.|++.
T Consensus        54 ~a~~~~~~~~~~~~~~~~~~~g~~~l~~~l~~~l~~~~g~~~~i~~~sG~~a~~~a~~~~-----~~~g-----d~vi~~  123 (385)
T TIGR01825        54 EAAAQAIQQYGVGAGAVRTIAGTLRLHEELEEKLAKFKKTEAALVFQSGFNTNQGVLSAL-----LRKG-----DIVLSD  123 (385)
T ss_pred             HHHHHHHHHcCCCCCccCcccCCcHHHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHh-----CCCC-----CEEEEE
Confidence            456666654322 11    23556789999999999888777677778899999888877     5567     899988


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .++|.... ......+            .....++..|++++++.++++. +++++++++++++++|.+.+    +++|.
T Consensus       124 ~~~~~~~~-~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~v~~~~v~~~tG~~~~----~~~i~  186 (385)
T TIGR01825       124 ELNHASII-DGLRLTK------------ATKKIYKHADMDDLDRVLRENPSYGKKLIVTDGVFSMDGDVAP----LPEIV  186 (385)
T ss_pred             ccccHHHH-HHHHhcC------------CceEEeCCCCHHHHHHHHHhhccCCCeEEEEecCCcCCCCccC----HHHHH
Confidence            88764432 2222211            1122233458888988887543 46889999999999999888    99999


Q ss_pred             HHHHhcCCEEEEeccccC--CcccccCcccccCCCCCc----EEEecccccCCccchhhheeCHHHHhhcCCCCCC--CC
Q 017259          156 DLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--ST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~~~d----~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~  227 (374)
                      ++|++||+++|+||+|+.  +++.+.. ....++..++    +.||||+++  . +.||+++++++.+.+......  .+
T Consensus       187 ~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~~i~~~s~sK~~~--~-~gG~~~~~~~~~~~~~~~~~~~~~~  262 (385)
T TIGR01825       187 ELAERYGAVTYVDDAHGSGVMGEAGRG-TVHHFGLEDKVDIQVGTLSKAIG--V-VGGYAAGHKELIEYLKNRARPFLFS  262 (385)
T ss_pred             HHHHHhCCEEEEECcccccCcCCCCCc-cHhhcCCCcCCcEEEEeccHHhh--c-CCCEEecCHHHHHHHHHhCcccccc
Confidence            999999999999999974  3322321 1122222233    459999996  2 457788888888877543221  12


Q ss_pred             CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      ...++..++++.++++.+.+ .+..++++++++++.+.|+++...   +.   .+.+.++.+.++...   +..++++.|
T Consensus       263 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~---~~~~~~~~~~~~~~~---~~~~~~~~L  333 (385)
T TIGR01825       263 TAQPPAVVAALAAAVDELQRSPELMERLWDNTRFFKAGLGKLGYD---TG---GSETPITPVVIGDEK---AAQEFSRRL  333 (385)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcCCC---CC---CCCCCEEEEEECCHH---HHHHHHHHH
Confidence            23466778888888886643 356778888888888888765211   11   122345555443321   467899999


Q ss_pred             HHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          307 KERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       307 ~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++||.++..       +...+|+++++.++++++++++++|+++++
T Consensus       334 ~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~~~  380 (385)
T TIGR01825       334 FDEGIFAQSIVFPTVPRGTARIRNIPTAEHTKDDLDQALDAYEKVGK  380 (385)
T ss_pred             HHCCcEEcccCCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHHHHH
Confidence            9999988531       237899999999999999999999999987

This model represents an enzyme subfamily related to three known enzymes; it appears closest to glycine C-acteyltransferase, shows no overlap with it in species distribution, and may share that function. The three closely related enzymes are glycine C-acetyltransferase (2-amino-3-ketobutyrate coenzyme A ligase), 5-aminolevulinic acid synthase, and 8-amino-7-oxononanoate synthase. All transfer the R-group (acetyl, succinyl, or 6-carboxyhexanoyl) from coenzyme A to an amino acid (Gly, Gly, Ala, respectively), with release of CO2 for the latter two reactions.

>PRK13355 bifunctional HTH-domain containing protein/aminotransferase; Provisional

Probab=99.95  E-value=1.9e-26  Score=224.33  Aligned_cols=296  Identities=13%  Similarity=0.108  Sum_probs=189.6

Q ss_pred             CCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .++++.+++++.+..    ..++|++|+|+++++..++.++     .++|     |+|+++.|+|..+...+...++...
T Consensus       188 ~~lReaia~~~~~~~~~~~~~~~I~it~G~~eal~~~~~~l-----~~~G-----d~Vli~~P~y~~y~~~~~~~g~~~v  257 (517)
T PRK13355        188 FSARKAIMQYAQLKGLPNVDVDDIYTGNGVSELINLSMSAL-----LDDG-----DEVLIPSPDYPLWTACVNLAGGTAV  257 (517)
T ss_pred             HHHHHHHHHHHHhcCCCCCChhHEEEeCcHHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcCHHHHHHHCCCEEE
Confidence            334444555554322    3468999999999999999887     5677     9999999999887665554443322


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ...    ...+..+  ..|++++++++.   ++++++++++++||+|.+. +++.+++|.++|++||++||+||+|.++.
T Consensus       258 ~~~----~~~~~~~--~~d~~~l~~~~~---~~~k~i~i~nP~NPTG~v~-~~~~l~~i~~~a~~~~~~ii~DE~Y~~~~  327 (517)
T PRK13355        258 HYR----CDEQSEW--YPDIDDIRSKIT---SRTKAIVIINPNNPTGALY-PREVLQQIVDIAREHQLIIFSDEIYDRLV  327 (517)
T ss_pred             Eee----cCcccCC--CCCHHHHHHhcC---cCceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEehhhhhhc
Confidence            111    0010000  027899988876   5788888888899999888 79999999999999999999999999875


Q ss_pred             ccccCc-ccccCCCCCc--E---EEeccccc-CCccchhhhee--CHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHH
Q 017259          176 RSGRML-ASDWEEVRPD--M---VILGKALG-GGVIPVSAVLA--DKE----VMLCIQPGEHGSTFGGNPLASAVAIASL  242 (374)
Q Consensus       176 ~~g~~~-~~~~~~~~~d--~---~s~sK~~~-~G~~~~G~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~al  242 (374)
                      +.+..+ ...  ...++  +   .||||.++ +|+ |+||+++  +++    +.+.+... ....++.+.+++.++.+++
T Consensus       328 ~~~~~~~s~~--~~~~~~~vi~~~S~SK~~~~~G~-RiG~~i~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~q~a~~~aL  403 (517)
T PRK13355        328 MDGLEHTSIA--SLAPDLFCVTFSGLSKSHMIAGY-RIGWMILSGNKRIAKDYIEGLNML-ANMRLCSNVPAQSIVQTAL  403 (517)
T ss_pred             CCCCCcccHH--HhCCCCeEEEEecchhhccCccc-ceEEEEeeCchhhHHHHHHHHHHH-hcCcCCcChHHHHHHHHHh
Confidence            544321 111  11223  2   37899987 799 9999884  343    33333211 2233567888888888887


Q ss_pred             HHHhh-hcHHHH---HHHHHHHHHHHHHHHHHhCCCceeeEEEEeee-EEEEeccCCC-chhHHHHHH-HHHHCCeEecc
Q 017259          243 DVIRD-EKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF-NAVEFDKTAL-PVSAYDICL-KMKERGILAKP  315 (374)
Q Consensus       243 ~~~~~-~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~-~~~~~~~~~~-~~~~~~~~~-~l~~~Gi~v~~  315 (374)
                      +.... +++.+.   +.++++.+.+.|    ..+|++ ....+.|.| +|+.++.... ..+..+++. .|.++||.+.|
T Consensus       404 ~~~~~~~~~~~~~~~~~~~r~~l~~~L----~~~~g~-~~~~p~g~fy~~~~l~~~~~~~~~~~~~~~~ll~~~gV~v~p  478 (517)
T PRK13355        404 GGHQSVKDYLVPGGRVYEQRELVYNAL----NAIPGI-SAVKPKAAFYIFPKIDVKKFNIHDDEQFALDLLHDKKVLIVQ  478 (517)
T ss_pred             cCCccHHHHHHHHHHHHHHHHHHHHHH----hcCCCc-ccCCCCeeeEEEeecCcccCCCCCHHHHHHHHHHhCCEEEeC
Confidence            52110 122222   222233333333    333332 223344444 5546653210 012345554 56678999988


Q ss_pred             C------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 T------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 ~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +      ..+++||++  ..+++++++++++|+++++
T Consensus       479 g~~F~~~~~~~~Ris~--~~~~~~l~~a~~rl~~~~~  513 (517)
T PRK13355        479 GTGFNWDKPDHFRVVY--LPRLEDLEDAMDRLADFFS  513 (517)
T ss_pred             cchhCCCCcCEEEEEe--CCCHHHHHHHHHHHHHHHH
Confidence            5      258999994  5789999999999999987

>PRK02731 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=3.4e-26  Score=214.18  Aligned_cols=286  Identities=20%  Similarity=0.205  Sum_probs=196.3

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++|+|+++++..++..+     .++|     |+|++.+|+|..+.......+..  
T Consensus        64 y~~~~~~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~--  131 (367)
T PRK02731         64 YPDGSGFELKAALAEKFGVDPERIILGNGSDEILELLARAY-----LGPG-----DEVIYSEHGFAVYPIAAQAVGAK--  131 (367)
T ss_pred             CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEecCCHHHHHHHHHHcCCe--
Confidence            4444567899999998864  58999999999988887776     4567     99999999986554433322211  


Q ss_pred             ccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           96 AIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                                 +..++.    .|++++++.++   ++++++++++++|++|.+.+ .+.+.+|++.|+ +|+++|+||+|
T Consensus       132 -----------~~~~~~~~~~~~~~~l~~~~~---~~~~~v~l~~p~nptG~~~~-~~~l~~l~~~~~-~~~~li~De~y  195 (367)
T PRK02731        132 -----------PVEVPAKDYGHDLDAMLAAVT---PRTRLVFIANPNNPTGTYLP-AEEVERFLAGVP-PDVLVVLDEAY  195 (367)
T ss_pred             -----------EEEecccCCCCCHHHHHHHhC---CCCcEEEEeCCCCCCCcCCC-HHHHHHHHHhCC-CCcEEEEECcH
Confidence                       111111    27888988886   47888888889999998884 555555555543 59999999999


Q ss_pred             cCCccccc-CcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGR-MLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~-~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      .++.+.+. .......+..++++   ||||.++ +|+ |+||+++++++.+.+....  .++..+.+++.++.++++...
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~~~~~l~~~~--~~~~~~~~~~~~a~~~l~~~~  272 (367)
T PRK02731        196 AEYVRRKDYEDGLELVAKFPNVVVTRTFSKAYGLAGL-RVGYGIAPPEIIDALNRVR--QPFNVNSLALAAAVAALDDDA  272 (367)
T ss_pred             HHhccCcCcccHHHHHhhcCCEEEEeeehHhhcCccc-ceeeeeCCHHHHHHHHHcc--CCCCCCHHHHHHHHHHhCCHH
Confidence            87644332 11222222234444   8999997 799 9999999999888876532  345667888888877775211


Q ss_pred             h-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEE
Q 017259          247 D-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIV  321 (374)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~l  321 (374)
                      . ++..++++++.+.+.+.|++.     ++.. .++.+.++|+.+++..   +..++++.|.++||.++++.    ++++
T Consensus       273 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~-~~~~g~~~~i~~~~~~---~~~~~~~~L~~~gI~v~~~~~~~~~~~i  343 (367)
T PRK02731        273 FVEKSRALNAEGMAWLTEFLAEL-----GLEY-IPSVGNFILVDFDDGK---DAAEAYQALLKRGVIVRPVAGYGLPNAL  343 (367)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-----CCcc-CCCCceEEEEECCCCC---CHHHHHHHHHHCCEEEEeCCCCCCCCeE
Confidence            0 123334444444444444443     2221 2345888998885443   67899999999999998863    4799


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++   .+.+++++++++|+++++
T Consensus       344 Ris~---~~~~e~~~l~~aL~~~~~  365 (367)
T PRK02731        344 RITI---GTEEENRRFLAALKEFLA  365 (367)
T ss_pred             EEec---CCHHHHHHHHHHHHHHHh
Confidence            9994   378899999999998875

>PRK06107 aspartate aminotransferase; Provisional

Probab=99.95  E-value=5.6e-26  Score=214.96  Aligned_cols=302  Identities=13%  Similarity=0.098  Sum_probs=203.1

Q ss_pred             CCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+..|    .+++++|+|+++|+..++..+     ..+|     |.|++++|+|.++........+.
T Consensus        71 G~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~~~al~~~~~~~-----~~~g-----d~vl~~~p~y~~y~~~~~~~~~~  140 (402)
T PRK06107         71 GTPALRKAIIAKLERRNGLHYADNEITVGGGAKQAIFLALMAT-----LEAG-----DEVIIPAPYWVSYPDMVLANDGT  140 (402)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEecCCCcCHHHHHHHcCCE
Confidence            444566778888876653    457999999999999998766     5667     99999999987765443333222


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc-CCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~-~i~li~Dea~~  172 (374)
                      ....    +...+.. .. .|++++++++.   ++++++++++++|++|... +.+.+++|+++|++| ++++|+||+|+
T Consensus       141 ~~~v----~~~~~~~-~~-~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~~iI~De~y~  210 (402)
T PRK06107        141 PVIV----ACPEEQG-FK-LTPEALEAAIT---PRTRWLILNAPSNPTGAVY-SRAELRALADVLLRHPHVLVLTDDIYD  210 (402)
T ss_pred             EEEe----cCCcccC-CC-CCHHHHHhhcC---cCceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCCeEEEEehhcc
Confidence            1111    1100000 00 26788888776   4677888887888999777 899999999999998 99999999999


Q ss_pred             CCcccccCcc-c-cc-CCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          173 GLARSGRMLA-S-DW-EEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       173 ~~~~~g~~~~-~-~~-~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ++.+.+..+. . .. .+....+   .||||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++..+++. 
T Consensus       211 ~l~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGl-RiG~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~-  288 (402)
T PRK06107        211 HIRFDDEPTPHLLAAAPELRDRVLVTNGVSKTYAMTGW-RIGYAAGPADLIAAINKLQSQSSSCPSSISQAAAAAALNG-  288 (402)
T ss_pred             ccccCCCCCCCHHHhCcCccCCEEEEeccchhhcCccc-ceeeeecCHHHHHHHHHHHHhcccCCChHHHHHHHHHhcC-
Confidence            7644443211 1 11 1112233   37899998 899 9999999999998887655555677888999988887752 


Q ss_pred             hhhcH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-----CCc---hhHHHHHHHHH-HCCeE
Q 017259          246 RDEKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-----ALP---VSAYDICLKMK-ERGIL  312 (374)
Q Consensus       246 ~~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~---~~~~~~~~~l~-~~Gi~  312 (374)
                       .+.+    .+.++++.+.+.+.|+.    +++.....+..|.++|+.++..     +.+   .+..++++.|+ ++||.
T Consensus       289 -~~~~~~~~~~~~~~~~~~~~~~L~~----~~g~~~~~p~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~  363 (402)
T PRK06107        289 -DQSFVTESVAVYKQRRDYALALLNA----IPGLSCLVPDGAFYLYVNCAGLIGKTTPEGKVLETDQDVVLYLLDSAGVA  363 (402)
T ss_pred             -ChHHHHHHHHHHHHHHHHHHHHHhc----CCCCcccCCCcceEEeeecccccccccccccCCCCHHHHHHHHHHhCCEE
Confidence             1223    33344444444444443    2222222233467777766321     000   13457776665 67999


Q ss_pred             eccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          313 AKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       313 v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.|+.    .+++||++.  .+++++++++++|+++++ ++
T Consensus       364 v~pg~~Fg~~~~iRis~~--~~~e~l~~~l~~l~~~l~-~~  401 (402)
T PRK06107        364 VVQGTAYGLSPYFRLSIA--TSLETLEEACARIERAVA-AL  401 (402)
T ss_pred             EeCccccCCCCeEEEEeC--CCHHHHHHHHHHHHHHHH-hc
Confidence            99863    589999955  579999999999999987 54

>PRK06855 aminotransferase; Validated

Probab=99.95  E-value=5.5e-26  Score=216.51  Aligned_cols=306  Identities=15%  Similarity=0.169  Sum_probs=190.9

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~   92 (374)
                      +..++++.+++++.+..    ..+++++|+|+++++..++. +     ..+|     |.|++.+|+|+++....... +.
T Consensus        74 G~~~LReaia~~~~~~~g~~~~~~~I~it~G~~~al~~~~~-l-----~~~G-----d~Vlv~~P~Y~~~~~~~~~~~g~  142 (433)
T PRK06855         74 GVLETREFLAELNNKRGGAQITPDDIIFFNGLGDAIAKIYG-L-----LRRE-----ARVIGPSPAYSTHSSAEAAHAGY  142 (433)
T ss_pred             CCHHHHHHHHHHHHhccCCCCCHhHEEEcCcHHHHHHHHHH-h-----cCCC-----CeEEEeCCCCchHHHHHHHhcCC
Confidence            33455666777666543    45689999999999988874 4     4567     99999999998854322211 21


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +...+..+  ..|+++|+++++++ ++++++++++++||||.+. +++.+++|.++|++||++||+||+|.
T Consensus       143 ~~v~v----~~~~~~~~--~~d~~~l~~~~~~~-~~~~~i~l~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~II~De~Y~  214 (433)
T PRK06855        143 PPVTY----RLDPENNW--YPDLDDLENKVKYN-PSIAGILLINPDNPTGAVY-PKEILREIVDIAREYDLFIICDEIYN  214 (433)
T ss_pred             eEEEE----ecccccCC--CCCHHHHHHHHhcC-CCceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEecccc
Confidence            11110    11000000  02789999988643 3567777778889999877 89999999999999999999999999


Q ss_pred             CCcccccCc-cc-ccC-C-CCCcEEEeccccc-CCccchhhheeC-----H---HHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          173 GLARSGRML-AS-DWE-E-VRPDMVILGKALG-GGVIPVSAVLAD-----K---EVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       173 ~~~~~g~~~-~~-~~~-~-~~~d~~s~sK~~~-~G~~~~G~~~~~-----~---~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      ++.+.+..+ .. ... + ....+.||||.++ +|+ |+||++++     +   .+.+.+..... ...+.+.++|.++.
T Consensus       215 ~l~~~~~~~~sl~~~~~~~~~I~~~S~SK~~~~pGl-RiG~ii~p~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~Q~a~~  292 (433)
T PRK06855        215 NIVYNGKKTVPLSEVIGDVPGIALKGISKELPWPGS-RCGWIEVYNADKDEVFKKYINSILNAKM-IEVCSTTLPQMAIP  292 (433)
T ss_pred             ccccCCCCCCCHHHHcCcCCeEEEecCccccCCCcc-eEEEEEEeCCchhhHHHHHHHHHHHhhc-cccCCChHHHHHHH
Confidence            875544321 11 111 1 1122349999997 899 99999862     2   23333332211 23456788888888


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCC------c----------------
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTAL------P----------------  296 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~------~----------------  296 (374)
                      ++++...-+++.++.+...++.++.+.+....+++ ....++ .|.++|+.++....      +                
T Consensus       293 ~~l~~~~~~~~~~~~~~~~~~r~~~~~~~L~~~~~-~~~~~p~gg~~~w~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  371 (433)
T PRK06855        293 RIMSHPEYKNYLKERNKRYEKRSNIAYEKLKDVPG-LKVNRTNGAFYMTVVFEDGVLNNKQSLPIENPEVKEYVEGLVKG  371 (433)
T ss_pred             HhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhcCCC-eeccCCCeeEEEeeccccccccccccCCcchhhhHHHHHHHHhc
Confidence            77753211223333333333333333333333322 222233 46788888864310      0                


Q ss_pred             --hhHHHHHHH-HHHCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          297 --VSAYDICLK-MKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       297 --~~~~~~~~~-l~~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+..+++.. +.++||.+.|+.     .+++||++.. .+++++++++++|+++++
T Consensus       372 ~~~~~~~~~~~l~~~~gV~v~PG~~F~~~~~~~Rls~~~-~~~~~i~~~~~~l~~~~~  428 (433)
T PRK06855        372 PVSPDKRFVYYLLASTGICVVPLSSFCTELNGFRVTLLE-RDEEKFEWIYQTLAEKIE  428 (433)
T ss_pred             CCCchHHHHHHHHHHcCEEEecCCcCCCCCCceEEEECC-CcHHHHHHHHHHHHHHHH
Confidence              024456655 457799998863     3569999654 478999999999999987

>PRK07337 aminotransferase; Validated

Probab=99.95  E-value=4.4e-26  Score=214.90  Aligned_cols=281  Identities=12%  Similarity=0.126  Sum_probs=190.8

Q ss_pred             CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC
Q 017259           35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD  114 (374)
Q Consensus        35 ~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  114 (374)
                      ..+++++|+|+++|+..++..+     .++|     |+|++.+|+|.+...............    +...+...  -.|
T Consensus        89 ~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~~----~~~~~~~~--~~~  152 (388)
T PRK07337         89 APERIVVTAGASAALLLACLAL-----VERG-----DEVLMPDPSYPCNRHFVAAAEGRPVLV----PSGPAERF--QLT  152 (388)
T ss_pred             ChHhEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhhHHHHHHcCCEEEEe----ecCCccCC--cCC
Confidence            3468999999999999988877     5667     999999999987654443333221111    11100000  026


Q ss_pred             HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEE-
Q 017259          115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV-  193 (374)
Q Consensus       115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~-  193 (374)
                      ++++++.+.   ++++++++.+++|++|.+. +.+.+++|+++|++|++++|+||+|.++.+.+.....  ....++++ 
T Consensus       153 ~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~--~~~~~~vi~  226 (388)
T PRK07337        153 AADVEAAWG---ERTRGVLLASPSNPTGTSI-APDELRRIVEAVRARGGFTIVDEIYQGLSYDAAPVSA--LSLGDDVIT  226 (388)
T ss_pred             HHHHHhhcC---ccceEEEEECCCCCCCcCc-CHHHHHHHHHHHHHCCCEEEEeccccccccCCCCcCh--hhccCCEEE
Confidence            888888776   5778888888889999777 8999999999999999999999999987554432111  12234443 


Q ss_pred             --Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHH
Q 017259          194 --ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       194 --s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~  267 (374)
                        ||||.++ +|+ |+||+++++++.+.+.........+.+.+++.++..+++.-..+   +.++.++++++.+.+.|++
T Consensus       227 ~~S~SK~~~~~G~-RiG~~~~~~~l~~~l~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~L~~  305 (388)
T PRK07337        227 INSFSKYFNMTGW-RLGWLVVPEALVGTFEKLAQNLFICASALAQHAALACFEPDTLAIYERRRAEFKRRRDFIVPALES  305 (388)
T ss_pred             EEechhhcCCchh-heeeeecCHHHHHHHHHHHHHhccCCChHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHh
Confidence              8899997 799 99999999988888775433444566888888887776421111   2233444444444444444


Q ss_pred             HHHhCCCcee-eEEEEeeeEEEEeccCC--CchhHHHHHHHHH-HCCeEeccCC-------CCEEEEecCCCCCHHHHHH
Q 017259          268 IQQQFPNYVK-EVRGRGLFNAVEFDKTA--LPVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQE  336 (374)
Q Consensus       268 ~~~~~~~~~~-~~~~~g~~~~~~~~~~~--~~~~~~~~~~~l~-~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~  336 (374)
                      .     +... ..+..|.++|+.++...  ...+..++++.|+ ++||.+.|+.       .+++|++++  .+++++++
T Consensus       306 ~-----~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~ll~~~gv~v~pg~~f~~~~~~~~~Ri~~~--~~~~~l~~  378 (388)
T PRK07337        306 L-----GFKVPVMPDGAFYVYADCRGVAHPAAGDSAALTQAMLHDAGVVLVPGRDFGPHAPRDYIRLSYA--TSMSRLEE  378 (388)
T ss_pred             c-----CCccccCCCeeEEEEEecccccCCCCCCHHHHHHHHHHhCCEEEeCchhhCCCCCCCEEEEEec--CCHHHHHH
Confidence            2     2221 12346889999886420  0014678888765 6799998742       479999965  46889999


Q ss_pred             HHHHHHHHH
Q 017259          337 GSKALHDVL  345 (374)
Q Consensus       337 ~~~~l~~~~  345 (374)
                      ++++|.+++
T Consensus       379 ~l~rl~~~l  387 (388)
T PRK07337        379 AVARLGKLF  387 (388)
T ss_pred             HHHHHHHHh
Confidence            999998765

>PLN02376 1-aminocyclopropane-1-carboxylate synthase

Probab=99.95  E-value=5.9e-26  Score=218.35  Aligned_cols=295  Identities=13%  Similarity=0.125  Sum_probs=194.2

Q ss_pred             CCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++++.+++.+.+..      ..++|++|+|+++|++.++..+     ..+|     |.|++..|+|.++........+.
T Consensus        97 ~~LR~aiA~~l~~~~g~~v~v~pe~Ivit~Ga~~al~~l~~~l-----~~pG-----D~Vlv~~P~Y~~~~~~~~~~~G~  166 (496)
T PLN02376         97 KKFRQAIAHFMGKARGGKVTFDPERVVMSGGATGANETIMFCL-----ADPG-----DVFLIPSPYYAAFDRDLRWRTGV  166 (496)
T ss_pred             HHHHHHHHHHHHHHhCCCCcCChhhEEEccchHHHHHHHHHHh-----CCCC-----CEEEECCCCccchHHHHHhhCCC
Confidence            445566666666542      3568999999999999999988     5677     99999999998876543322221


Q ss_pred             ccccccCCCCCCCceeccC-------CCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259           94 NEAIRGFGPLLPGHLKVDF-------GDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI  163 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i  163 (374)
                                  .+..+++       .|+++++++++.   .+.+++++++++++||+|.+. +++.+++|+++|++||+
T Consensus       167 ------------~vv~v~~~~~~~~~~~~~~le~a~~~a~~~~~~~k~l~l~nP~NPTG~~~-s~e~l~~L~~~a~~~~i  233 (496)
T PLN02376        167 ------------EIIPVPCSSSDNFKLTVDAADWAYKKAQESNKKVKGLILTNPSNPLGTML-DKDTLTNLVRFVTRKNI  233 (496)
T ss_pred             ------------EEEEEeCCCCccCcCCHHHHHHHHHHHHhcCCCeeEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCC
Confidence                        1111111       167888766542   235789888888999999887 89999999999999999


Q ss_pred             EEEEeccccCCcccccCc-ccc-cC---C---CCCc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCC
Q 017259          164 LMIADEIQSGLARSGRML-ASD-WE---E---VRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFG  229 (374)
Q Consensus       164 ~li~Dea~~~~~~~g~~~-~~~-~~---~---~~~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~  229 (374)
                      +||+||+|.++.+.+..+ +.. ..   .   ..++    +.||||.++ +|+ |+||+++ ++.+.+.++..  .....
T Consensus       234 ~lI~DEiY~~~~f~~~~~~si~~l~~~~~~~~~~~~~v~vv~S~SK~~glpGl-RvG~li~~~~~l~~~~~~~--~~~~~  310 (496)
T PLN02376        234 HLVVDEIYAATVFAGGDFVSVAEVVNDVDISEVNVDLIHIVYSLSKDMGLPGF-RVGIVYSFNDSVVSCARKM--SSFGL  310 (496)
T ss_pred             EEEEEcCccccccCCCCcccHHHhhccccccccCCCeEEEEEeccccCCCCcc-eEEEEEECCHHHHHHHHHH--hhcCC
Confidence            999999999865444322 111 10   1   1223    238999998 899 9999988 45555554321  12224


Q ss_pred             CCHHHHHHHHHHHHHHhh-hcH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----chhHH
Q 017259          230 GNPLASAVAIASLDVIRD-EKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----PVSAY  300 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~-~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----~~~~~  300 (374)
                      .+.+++.++.+.++.-.- +++    .++++++.+.+.+.|++.     ++.......|.|+|++++....    .....
T Consensus       311 vs~~~Q~a~~~~L~d~~~~~~~l~~~r~~l~~r~~~l~~~L~~~-----gi~~~~~~aG~flwi~l~~~~~~~~~~~~e~  385 (496)
T PLN02376        311 VSSQTQLMLASMLSDDQFVDNFLMESSRRLGIRHKVFTTGIKKA-----DIACLTSNAGLFAWMDLRHLLRDRNSFESEI  385 (496)
T ss_pred             CCHHHHHHHHHHhCChhHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CCcccCCCceEEEEEEchhhhccCCchhHHH
Confidence            577777777666642110 122    222333333333333332     2222223457999998864210    11236


Q ss_pred             HHHHHHHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          301 DICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       301 ~~~~~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++.++++ ||.+.|+.      ++++||++.. .++++++.++++|++++.
T Consensus       386 ~l~~~ll~~~gV~v~pGs~F~~~~~g~~Ri~fa~-~~~~~l~~al~rl~~~l~  437 (496)
T PLN02376        386 ELWHIIIDKVKLNVSPGSSFRCTEPGWFRICFAN-MDDDTLHVALGRIQDFVS  437 (496)
T ss_pred             HHHHHHHHcCCEEEeCccccCCCCCCEEEEEeeC-CCHHHHHHHHHHHHHHHH
Confidence            788888875 99999862      5799999552 467999999999999986

>PRK07777 aminotransferase; Validated

Probab=99.95  E-value=6e-26  Score=213.89  Aligned_cols=296  Identities=15%  Similarity=0.196  Sum_probs=193.7

Q ss_pred             HHHHHHHHhcccCC----C-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           23 FPVFAERLTSMFGY----D-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        23 ~~~l~~~l~~~~~~----~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ++.+++++.+.+|.    + ++++|+|+++|+..++..+     ..+|     |+|++..|+|+++...+...+......
T Consensus        67 r~~ia~~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~~-----~~~g-----d~vli~~p~y~~~~~~~~~~g~~~~~~  136 (387)
T PRK07777         67 RAAIAAQRRRRYGLEYDPDTEVLVTVGATEAIAAAVLGL-----VEPG-----DEVLLIEPYYDSYAAVIAMAGAHRVPV  136 (387)
T ss_pred             HHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhhHHHHHHCCCEEEEe
Confidence            33444444443443    3 6999999999999988876     4567     999999999987654433332211111


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                          +....-.... .|++++++.+.   ++++++++++++|++|... +.+.+++|.++|++|++++|+||+|.++.+.
T Consensus       137 ----~~~~~~~~~~-~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~~~~~li~De~y~~~~~~  207 (387)
T PRK07777        137 ----PLVPDGRGFA-LDLDALRAAVT---PRTRALIVNSPHNPTGTVL-TAAELAAIAELAVEHDLLVITDEVYEHLVFD  207 (387)
T ss_pred             ----ecCCccCCCc-CCHHHHHHhcC---cccEEEEEcCCCCCCCccC-CHHHHHHHHHHHHhcCcEEEEeccchhcccC
Confidence                1111000000 27888888776   4688889988889999877 8999999999999999999999999976543


Q ss_pred             ccC-cccccC-CCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--hc
Q 017259          178 GRM-LASDWE-EVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EK  249 (374)
Q Consensus       178 g~~-~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~~  249 (374)
                      +.. .....+ +...+   +.||||.++ +|+ |+||+++++++.+.+.......++..+.+.+.++..++.....  ..
T Consensus       208 ~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~l~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~  286 (387)
T PRK07777        208 GARHLPLATLPGMRERTVTISSAAKTFNVTGW-KIGWACGPAPLIAAVRAAKQYLTYVGGAPFQPAVAHALDHEDAWVAA  286 (387)
T ss_pred             CCCcccHhhCCCCcCcEEEEeechhhccCcCc-eeEEEecCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHhCCcHHHHH
Confidence            331 121111 11112   348999998 799 9999999998888777544444566666677666666542111  13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC---------CC
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH---------DT  319 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~---------~~  319 (374)
                      +.+.++++.+.+.+.|+..     +........+.++|+.++... ..+..++++.|+ ++||.+.|+.         .+
T Consensus       287 ~~~~~~~~~~~l~~~L~~~-----~~~~~~~~g~~~~~~~~~~~~-~~~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~~~  360 (387)
T PRK07777        287 LRDSLQAKRDRLAAGLAEA-----GFEVHDSAGTYFLCADPRPLG-YDDGTEFCRALPERVGVAAIPMSVFYDPADAWNH  360 (387)
T ss_pred             HHHHHHHHHHHHHHHHHhC-----CCCccCCCcceEEEecccccC-CCCHHHHHHHHHHhCCEEEeCchHhCCCCcCCCC
Confidence            3455555555565555543     121112224566676664210 015689999997 5799998752         35


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||+++  .+++++++++++|+++..
T Consensus       361 ~~Ri~~~--~~~~~l~~~l~~l~~~~~  385 (387)
T PRK07777        361 LVRFAFC--KRDDTLDEAIRRLRALRG  385 (387)
T ss_pred             eEEEEec--CCHHHHHHHHHHHHHHhc
Confidence            8999954  578999999999987653

>PRK07550 hypothetical protein; Provisional

Probab=99.95  E-value=4.2e-26  Score=214.91  Aligned_cols=296  Identities=14%  Similarity=0.158  Sum_probs=196.6

Q ss_pred             CCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           19 YNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++.+..    ..+++++|+|+++|+..++.++     .++|     |+|++.+|+|.++.......+...
T Consensus        69 ~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~  138 (386)
T PRK07550         69 LPELREAYAAHYSRLYGAAISPEQVHITSGCNQAFWAAMVTL-----AGAG-----DEVILPLPWYFNHKMWLDMLGIRP  138 (386)
T ss_pred             CHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEcCCCCcchHHHHHhcCCEE
Confidence            3344555666665543    3468999999999999998887     4567     999999999976644333222211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+. .. ..|++++++.++   ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|++|
T Consensus       139 ~~v----~~~~~~-~~-~~~~~~l~~~~~---~~~~~v~~~~P~NPtG~~~-~~~~~~~i~~~~~~~~~~iI~Dd~y~~~  208 (386)
T PRK07550        139 VYL----PCDEGP-GL-LPDPAAAEALIT---PRTRAIALVTPNNPTGVVY-PPELLHELYDLARRHGIALILDETYRDF  208 (386)
T ss_pred             EEE----ecCCCc-CC-CCCHHHHHHHhc---ccCcEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCeEEEEeccchhh
Confidence            111    110000 00 016888998887   3577777777788888877 7999999999999999999999999977


Q ss_pred             ccccc-Cc-ccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-
Q 017259          175 ARSGR-ML-ASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-  247 (374)
Q Consensus       175 ~~~g~-~~-~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-  247 (374)
                      ...+. .. .....+...+   +.||||.++ +|+ |+||+++++++++.+.......+.+.+.+++.++..+++.+.+ 
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~i~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~  287 (386)
T PRK07550        209 DSGGGAPHDLFADPDWDDTLVHLYSFSKSYALTGH-RVGAVVASPARIAEIEKFMDTVAICAPRIGQIAVAWGLPNLADW  287 (386)
T ss_pred             ccCCCCCcchhhCCCccccEEEEecchhhccCccc-ceEeeecCHHHHHHHHHHHhhcccCCCcHHHHHHHHHhccHHHH
Confidence            43221 11 1111111222   349999998 799 9999999998888877554445566788888888777764321 


Q ss_pred             -hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccC------CC
Q 017259          248 -EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPT------HD  318 (374)
Q Consensus       248 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~------~~  318 (374)
                       ++.+++++++.+++.+.|+..    +.+ ...+..+.++|+.++. ..   +..+++++|+ ++||.+.|+      ..
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~g~~~~~~~~~~~~~---~~~~l~~~l~~~~gv~v~pg~~f~~~~~  359 (386)
T PRK07550        288 RAGNRAEIARRRDAFRAVFARL----PGW-ELLASGAYFAYVRHPFPDR---PSREVARRLAKEAGILCLPGTMFGPGQE  359 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhC----CCc-eeCCCceEEEEecCCCCCC---CHHHHHHHHHHhcCEEEeCchhhCCCCC
Confidence             123344444555555544432    122 1123346777877764 32   6788999876 579999885      25


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +++||+++. .+++++++++++|++.
T Consensus       360 ~~iRis~~~-~~~~~~~~~~~~l~~~  384 (386)
T PRK07550        360 GYLRLAFAN-ADVAGIGELVERLRAF  384 (386)
T ss_pred             CEEEEEeec-CCHHHHHHHHHHHHhh
Confidence            799999653 4688999999998764

>PRK06358 threonine-phosphate decarboxylase; Provisional

Probab=99.95  E-value=7.4e-26  Score=210.44  Aligned_cols=281  Identities=17%  Similarity=0.200  Sum_probs=193.1

Q ss_pred             CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+|++.+++++  ..+++++|+|+++++..+++++.       +     ++|++.+|+|+.+...+...+..  
T Consensus        51 Y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~~~-------~-----~~v~i~~P~y~~~~~~~~~~g~~--  116 (354)
T PRK06358         51 YPDPDYLELRKRIASFEQLDLENVILGNGATELIFNIVKVTK-------P-----KKVLILAPTFAEYERALKAFDAE--  116 (354)
T ss_pred             CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHhC-------C-----CcEEEecCChHHHHHHHHHcCCe--
Confidence            44445677888888877  55689999999999998887651       1     67999999998766554433321  


Q ss_pred             ccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           96 AIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                                 +..++.       .| +++.+.+.   ++++++++.+++||+|... +++.+++|.++|++||++||+|
T Consensus       117 -----------~~~~~~~~~~~~~~d-~~~~~~~~---~~~~~v~~~~P~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~D  180 (354)
T PRK06358        117 -----------IEYAELTEETNFAAN-EIVLEEIK---EEIDLVFLCNPNNPTGQLI-SKEEMKKILDKCEKRNIYLIID  180 (354)
T ss_pred             -----------eEEEeCccccCCCcc-HHHHHhhc---cCCCEEEEeCCCCCCCCcc-CHHHHHHHHHHHHhcCCEEEEe
Confidence                       111111       13 34444443   3577777777789999877 8999999999999999999999


Q ss_pred             ccccCCcccccCcc-cccCCCCCcE---EEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLA-SDWEEVRPDM---VILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASL  242 (374)
Q Consensus       169 ea~~~~~~~g~~~~-~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al  242 (374)
                      |+|.+|...+.... .......+.+   -||||.++ +|+ |+||+++ ++.+.+.+....  ..++.+.+++.++.+++
T Consensus       181 e~Y~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~gl~G~-RiG~lv~~~~~~~~~~~~~~--~~~~~~~~~q~~~~~~l  257 (354)
T PRK06358        181 EAFMDFLEENETISMINYLENFKNLIIIRAFTKFFAIPGL-RLGYGLTSNKNLAEKLLQMR--EPWSINTFADLAGQTLL  257 (354)
T ss_pred             CcccccCCCccchhHHHhccCCCCEEEEEechhhccCcch-hheeeecCCHHHHHHHHHhC--CCCcchHHHHHHHHHHh
Confidence            99998755443211 1112222333   39999999 899 9999987 467777776432  35677888888888877


Q ss_pred             HHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----
Q 017259          243 DVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----  317 (374)
Q Consensus       243 ~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----  317 (374)
                      +.-.- .+..+.++++++++.+.|++    +++ .....+.|.|+|+.+++      ..++++.|.++||.++++.    
T Consensus       258 ~~~~~~~~~~~~~~~~r~~l~~~L~~----~~~-~~~~~~~g~f~~~~~~~------~~~~~~~l~~~gI~v~~~~~f~~  326 (354)
T PRK06358        258 DDKEYIKKTIQWIKEEKDFLYNGLSE----FKG-IKVYKPSVNFIFFKLEK------PIDLRKELLKKGILIRSCSNYRG  326 (354)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHhc----CCC-cEEcCCcceEEEEEcCc------hHHHHHHHHHCCeEEEECCCCCC
Confidence            52100 12234444444444444433    322 22234467788887763      3689999999999998852    


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                        .+++|++   ..++++.++++++|++++
T Consensus       327 ~~~~~iRls---~~~~~~~~~l~~~l~~~~  353 (354)
T PRK06358        327 LDENYYRVA---VKSREDNKKLLKALEVIL  353 (354)
T ss_pred             CCCCEEEEE---eCCHHHHHHHHHHHHHHh
Confidence              4689999   668899999999998765

>PRK07865 N-succinyldiaminopimelate aminotransferase; Reviewed

Probab=99.95  E-value=4.4e-26  Score=213.06  Aligned_cols=281  Identities=16%  Similarity=0.107  Sum_probs=189.5

Q ss_pred             CCCCcHHHHHHHHhccc-----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~-----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +...+++.+++++.+.+     ..+++++|+|+++++..++.++.    ..+|     |.|++.+|+|.++...+...+.
T Consensus        63 G~~~lr~~ia~~l~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~  133 (364)
T PRK07865         63 GTPELREAIVGWLARRRGVTGLDPAAVLPVIGSKELVAWLPTLLG----LGPG-----DVVVIPELAYPTYEVGARLAGA  133 (364)
T ss_pred             CCHHHHHHHHHHHHHHcCCCCCCcccEEEccChHHHHHHHHHHHc----CCCC-----CEEEECCCCcccHHHHHHhcCC
Confidence            33455666777776543     35689999999999988776662    3567     9999999999776544433321


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                                     ..+.++++++++.      ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.
T Consensus       134 ---------------~~~~~~~~~~l~~------~~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~  191 (364)
T PRK07865        134 ---------------TVVRADSLTELGP------QRPALIWLNSPSNPTGRVL-GVDHLRKVVAWARERGAVVASDECYL  191 (364)
T ss_pred             ---------------EEEecCChhhCCc------ccceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEecchh
Confidence                           1222234444332      4678888888899999888 79999999999999999999999999


Q ss_pred             CCcccccCccc-ccC--C-CCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          173 GLARSGRMLAS-DWE--E-VRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       173 ~~~~~g~~~~~-~~~--~-~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      ++...+..... ...  + ....   +.||||.++ +|+ |+||+++++++.+.+........++.+.+.+.++.++++.
T Consensus       192 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  270 (364)
T PRK07865        192 ELGWDAEPVSILDPRVCGGDHTGLLAVHSLSKQSNLAGY-RAGFVAGDPALVAELLEVRKHAGMMVPAPVQAAMVAALGD  270 (364)
T ss_pred             hhccCCCCCccccccccCCccceEEEEeechhccCCCce-eeEEEecCHHHHHHHHHHHHhcCCCcCHHHHHHHHHHhCC
Confidence            77554432211 110  1 1122   338999996 799 9999999999888877544444566788888877776653


Q ss_pred             Hhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC------C
Q 017259          245 IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------H  317 (374)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~------~  317 (374)
                      ... +..++.++++.+.+.+.|+..     ++.......+.++|+.++.     +..++.+.|.++||.+.|+      .
T Consensus       271 ~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gv~v~pg~~f~~~~  340 (364)
T PRK07865        271 DAHVREQRERYARRRAVLRPALEAA-----GFRVDHSEAGLYLWATRGE-----DCWDTVAWLAERGILVAPGDFYGPAG  340 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCccEEEEEeCCC-----CHHHHHHHHHHCCEEEeCccccCcCC
Confidence            110 123344445555555555443     2221112235566766532     4567889999999999874      2


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      ++++||++.  .+++++++++++|+
T Consensus       341 ~~~iRi~~~--~~~~~~~~~~~~l~  363 (364)
T PRK07865        341 AQHVRVALT--ATDERIAAAVERLA  363 (364)
T ss_pred             CCEEEEEec--CCHHHHHHHHHHhh
Confidence            579999954  47899999999885

>PRK14807 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=6e-26  Score=210.98  Aligned_cols=284  Identities=17%  Similarity=0.181  Sum_probs=196.2

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++|+|+++++..++.++     .++|     |+|++.+|+|..+...+...+....
T Consensus        56 y~~~~~~~lr~~ia~~~~~~~~~i~it~G~~~~l~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~  125 (351)
T PRK14807         56 YPDPTAEKLREELARYCSVVPTNIFVGNGSDEIIHLIMLAF-----INKG-----DVVIYPHPSFAMYSVYSKIAGAVEI  125 (351)
T ss_pred             CCCccHHHHHHHHHHHhCCCcccEEEecCHHHHHHHHHHHh-----cCCC-----CEEEEeCCChHHHHHHHHHcCCeEE
Confidence            4455678899999998754  68999999999999988877     5677     9999999999765443333322211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+..    .|+++++++++.  .+++++++++++|++|...+    .+++.++|++++.++|+||+|.++.
T Consensus       126 ~v----~~~~~~~----~d~~~l~~~~~~--~~~k~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~ivDe~y~~~~  191 (351)
T PRK14807        126 PV----KLKEDYT----YDVGSFIKVIEK--YQPKLVFLCNPNNPTGSVIE----REDIIKIIEKSRGIVVVDEAYFEFY  191 (351)
T ss_pred             Ee----ecCCCCC----CCHHHHHHHhhc--cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCCEEEEeCcchhhc
Confidence            11    1100000    268899888863  26888888889999999987    7888888888888999999998763


Q ss_pred             ccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259          176 RSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA  251 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~  251 (374)
                        +.... ......+++   -||||.++ +|+ |+||+++++++.+.+.....  .++.+.+++.++..+++...-++..
T Consensus       192 --~~~~~-~~~~~~~~vi~~~S~SK~~~~~Gl-RiG~~v~~~~~~~~~~~~~~--~~~~~~~~q~~~~~~l~~~~~~~~~  265 (351)
T PRK14807        192 --GNTIV-DVINEFENLIVLRTLSKAFGLAGL-RVGYAVANENILKYLNLVKS--PYNINSLSQVIALKVLRTGVLKERV  265 (351)
T ss_pred             --ccchH-HHhhhCCCEEEEecchHhcccchh-ceeeeecCHHHHHHHHHccC--CCCcCHHHHHHHHHHHhHHHHHHHH
Confidence              22111 111112233   38999998 899 99999999999888875322  3566888888888877642112333


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEEEecC
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTPP  326 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~~~  326 (374)
                      +.++++++++.+.|++    +++. ...++.+.++|+.++      +..++++.|.++||.+++..     .+++||++ 
T Consensus       266 ~~~~~~r~~l~~~l~~----~~g~-~~~~~~~~~~~i~~~------~~~~~~~~l~~~gV~v~~~~~~~~~~~~iRis~-  333 (351)
T PRK14807        266 NYILNERERLIKELSK----IPGI-KVYPSKTNFILVKFK------DADYVYQGLLERGILVRDFSKVEGLEGALRITV-  333 (351)
T ss_pred             HHHHHHHHHHHHHHHh----CCCc-EECcCCccEEEEEcC------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEc-
Confidence            4444455555554433    2332 223445778887765      35789999999999997642     57999993 


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDVL  345 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~  345 (374)
                        .+.++.+++++.|++++
T Consensus       334 --~~~~~~~~l~~~l~~~~  350 (351)
T PRK14807        334 --SSCEANDYLINGLKELL  350 (351)
T ss_pred             --CCHHHHHHHHHHHHHhh
Confidence              46788899999998764

>PRK05764 aspartate aminotransferase; Provisional

Probab=99.95  E-value=6.4e-26  Score=214.31  Aligned_cols=296  Identities=16%  Similarity=0.168  Sum_probs=196.0

Q ss_pred             cHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           22 KFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ...+|++.+++++    +    .+++++|+|+++|+..++..+     ..+|     ++|++.+|+|.++...+...+..
T Consensus        69 g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~  138 (393)
T PRK05764         69 GIPELREAIAAKLKRDNGLDYDPSQVIVTTGAKQALYNAFMAL-----LDPG-----DEVIIPAPYWVSYPEMVKLAGGV  138 (393)
T ss_pred             ChHHHHHHHHHHHHHHhCCCCCHHHEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEecCCCCcchHHHHHHcCCE
Confidence            3455555555543    3    357999999999999998887     4566     99999999997765444333221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ....    +...+. .. ..|+++++++++   ++++++++++++|++|.+. +.+.+++|.++|++||+++|+||+|.+
T Consensus       139 ~~~~----~~~~~~-~~-~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~  208 (393)
T PRK05764        139 PVFV----PTGEEN-GF-KLTVEQLEAAIT---PKTKALILNSPSNPTGAVY-SPEELEAIADVAVEHDIWVLSDEIYEK  208 (393)
T ss_pred             EEEE----ecCccc-CC-cCCHHHHHHhhC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEeccccc
Confidence            1111    110000 00 016788988886   4678888888888898877 789999999999999999999999987


Q ss_pred             CcccccC-ccccc--CCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          174 LARSGRM-LASDW--EEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       174 ~~~~g~~-~~~~~--~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +...+.. .....  .+....   +.||||.++ +|+ |+||+++++++.+.+...........+.+++.++..+++.  
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~i~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~--  285 (393)
T PRK05764        209 LVYDGAEFTSIASLSPELRDRTITVNGFSKAYAMTGW-RLGYAAGPKELIKAMSKLQSHSTSNPTSIAQYAAVAALNG--  285 (393)
T ss_pred             eeeCCCCcccHHHcCCCCcCCEEEEecCcccccCccc-eeEEEecCHHHHHHHHHHHhhcccCCChHHHHHHHHHHcC--
Confidence            6443321 11111  111122   337999999 799 9999999999988886543344556788888888777752  


Q ss_pred             hhc----HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHH-CCeEeccCC--
Q 017259          247 DEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKE-RGILAKPTH--  317 (374)
Q Consensus       247 ~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~-~Gi~v~~~~--  317 (374)
                      .++    ..++++++.+.+.+.|++    ++++.......+.++|+.++....  +.+..++.+.|++ +||.+.++.  
T Consensus       286 ~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f  361 (393)
T PRK05764        286 PQDEVEEMRQAFEERRDLMVDGLNE----IPGLECPKPEGAFYVFPNVSKLLGKSITDSLEFAEALLEEAGVAVVPGIAF  361 (393)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHhh----CCCCcccCCCcceEEEEecccccccccCCHHHHHHHHHHhCCEEEcccccc
Confidence            122    333444444444444443    222221122234566777754310  1124788888864 699998863  


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+++||++  ..+++++++++++|.++++
T Consensus       362 ~~~~~vRis~--~~~~~~~~~~i~~l~~~~~  390 (393)
T PRK05764        362 GAPGYVRLSY--ATSLEDLEEGLERIERFLE  390 (393)
T ss_pred             CCCCEEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence              48999994  4689999999999999887

>TIGR03539 DapC_actino succinyldiaminopimelate transaminase

Probab=99.95  E-value=2.3e-26  Score=214.24  Aligned_cols=280  Identities=17%  Similarity=0.112  Sum_probs=190.6

Q ss_pred             CCCCcHHHHHHHHhccc-----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~-----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++++++++.+.+     ..+++++|+|+++++..++.++.    .++|     |.|++.+|+|.++...+...+.
T Consensus        57 G~~~lr~~ia~~~~~~~~~~~~~~~~I~it~G~~~~i~~~~~~l~----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~  127 (357)
T TIGR03539        57 GTPELREAIVDWLERRRGVPGLDPTAVLPVIGTKELVAWLPTLLG----LGPG-----DTVVIPELAYPTYEVGALLAGA  127 (357)
T ss_pred             CCHHHHHHHHHHHHHhcCCCCCCcCeEEEccChHHHHHHHHHHHc----CCCC-----CEEEECCCCcHHHHHHHHhcCC
Confidence            44566677777776653     34689999999999998877663    4567     9999999999776544333221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                                     ..+.+++++.++    .  ++++++++++++||+|... +.+.+++|.++|++||++||+||+|.
T Consensus       128 ---------------~~~~v~~~~~l~----~--~~~~~v~~~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~  185 (357)
T TIGR03539       128 ---------------TPVAADDPTELD----P--VGPDLIWLNSPGNPTGRVL-SVDELRAIVAWARERGAVVASDECYL  185 (357)
T ss_pred             ---------------EEeccCChhhcC----c--cCccEEEEeCCCCCcCccC-CHHHHHHHHHHHHHcCeEEEEecchh
Confidence                           122223443332    1  4788999999999999888 89999999999999999999999998


Q ss_pred             CCcccccCccc-cc--C-CCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          173 GLARSGRMLAS-DW--E-EVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       173 ~~~~~g~~~~~-~~--~-~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      ++.+.+..... ..  . +....   +-||||.++ +|+ |+||+++++++.+.+........++.+.+++.++.++++.
T Consensus       186 ~~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~G~-R~G~~i~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~  264 (357)
T TIGR03539       186 ELGWEGRPVSILDPRVCGGDHTGLLAVHSLSKRSNLAGY-RAGFVAGDPALVAELLTVRKHAGLMVPAPVQAAMVAALGD  264 (357)
T ss_pred             hhccCCCCccceecccCCCccccEEEEeccccccCCCce-eEEEEecCHHHHHHHHHHHhhcccCCCHHHHHHHHHHcCC
Confidence            77554432111 10  0 01112   238999986 799 9999999999888876543444567788888888777743


Q ss_pred             Hh-hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------
Q 017259          245 IR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------  317 (374)
Q Consensus       245 ~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------  317 (374)
                      .. .....+.++++.+.+.+.|++.     ++.......+.++|+.++.     +..++.+.|.++||.+.|+.      
T Consensus       265 ~~~~~~~~~~~~~~~~~~~~~L~~~-----g~~~~~p~~~~~~~~~~~~-----~~~~~~~~l~~~gV~v~pg~~f~~~~  334 (357)
T TIGR03539       265 DGHVAEQKARYAARRAQLKPALEKA-----GFRIDHSEAGLYLWATRGE-----DAWDTVDRLAELGILVAPGDFYGPAG  334 (357)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHc-----CCCCcCCCccEEEEEECCC-----CHHHHHHHHHhCCEEECCccccCCCC
Confidence            11 0123444555555555555443     2211122245566665543     46789999999999998853      


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHH
Q 017259          318 DTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      .+++||+++  .+++++++++++|
T Consensus       335 ~~~iRis~~--~~~~~i~~~~~~l  356 (357)
T TIGR03539       335 SQHVRVALT--ATDERIAAAVARL  356 (357)
T ss_pred             CCeEEEEec--CCHHHHHHHHHhh
Confidence            579999954  4788999998876

This family of actinobacterial succinyldiaminopimelate transaminase enzymes (DapC) are members of the pfam00155 superfamily. Many of these genes appear adjacent to other genes encoding enzymes of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK07568 aspartate aminotransferase; Provisional

Probab=99.95  E-value=1.3e-25  Score=212.41  Aligned_cols=297  Identities=15%  Similarity=0.209  Sum_probs=196.0

Q ss_pred             CcHHHHHHHHhccc-------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           21 DKFPVFAERLTSMF-------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        21 ~~~~~l~~~l~~~~-------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ....++.+.+++++       ..+++++|+|+++|+..++..+     ..+|     |+|++.+|+|..+.......+..
T Consensus        66 ~g~~~lr~~ia~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~~  135 (397)
T PRK07568         66 QGIPELREAFAKYYKKWGIDVEPDEILITNGGSEAILFAMMAI-----CDPG-----DEILVPEPFYANYNGFATSAGVK  135 (397)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCcceEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEecCCCccHHHHHHHcCCE
Confidence            34555666666653       4568999999999999998877     4567     99999999987654333222211


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...    .+...+ ......++++++++++   ++++++++++++|++|.+. +.+.+++|.++|+++|++||+||+|.+
T Consensus       136 ~~~----v~~~~~-~g~~~~~~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~ii~De~y~~  206 (397)
T PRK07568        136 IVP----VTTKIE-EGFHLPSKEEIEKLIT---PKTKAILISNPGNPTGVVY-TKEELEMLAEIAKKHDLFLISDEVYRE  206 (397)
T ss_pred             EEE----eecCcc-cCCCCCCHHHHHHhcC---ccceEEEEECCCCCCCccC-CHHHHHHHHHHHHHCCcEEEEeccchh
Confidence            110    011000 0011125688888776   4688888888888899777 899999999999999999999999998


Q ss_pred             CcccccCc-cc-ccCCCCCcEE---Eeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          174 LARSGRML-AS-DWEEVRPDMV---ILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       174 ~~~~g~~~-~~-~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +.+.+..+ .. ...+..+.++   ||||.++ +|+ |+||++++ +++.+.+..... ..++.+.+.+.++..+++...
T Consensus       207 ~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~~G~-R~G~~~~~~~~~~~~~~~~~~-~~~~~s~~~q~~~~~~l~~~~  284 (397)
T PRK07568        207 FVYDGLKYTSALSLEGLEDRVIIIDSVSKRYSACGA-RIGCLISKNKELIAAAMKLCQ-ARLSPPTLEQIGAAALLDTPE  284 (397)
T ss_pred             cccCCCCccChhhcCCCcCCEEEEecchhhccCCCc-ceEEEecCCHHHHHHHHHHhh-ccCCCCcHHHHHHHHHhhCCH
Confidence            86554321 11 1112233333   8999999 599 99998874 677766543222 246778888888877775321


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHHHHHHH------CCeEeccCC
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKE------RGILAKPTH  317 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~------~Gi~v~~~~  317 (374)
                      .  +++.+.++++.+.+.+.|++    +++ +....+ .+.++|+.++..    +..++++.|.+      +||.+.|+.
T Consensus       285 ~~~~~~~~~~~~~~~~l~~~L~~----~~~-~~~~~p~g~~~~~~~l~~~----~~~~~~~~l~~~~~~~~~gv~v~pg~  355 (397)
T PRK07568        285 SYFDEVREEYKKRRDILYEELNK----IPG-VVCEKPKGAFYIIAKLPVD----DAEDFAKWLLTDFNYNGETVMVAPAS  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc----CCC-ceecCCCcceEEEEecCCC----CHHHHHHHHHhhcccccceEEEeCch
Confidence            1  12333444444445444433    222 222223 355678877653    56788898876      599998741


Q ss_pred             ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          318 ---------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       318 ---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                               .+++|+++.  .+++++++++++|+++++ +..
T Consensus       356 ~f~~~~~~~~~~iRls~~--~~~~~~~~~~~~l~~~l~-~~~  394 (397)
T PRK07568        356 GFYATPGLGKNEIRIAYV--LNEEDLKRAMEILKEALE-KYN  394 (397)
T ss_pred             HhcCCCCCCCCeEEEEEe--CCHHHHHHHHHHHHHHHH-Hhh
Confidence                     369999954  568999999999999998 653

>TIGR03538 DapC_gpp succinyldiaminopimelate transaminase

Probab=99.95  E-value=6.2e-26  Score=214.19  Aligned_cols=291  Identities=13%  Similarity=0.076  Sum_probs=192.1

Q ss_pred             CCcHHHHHHHHhccc------CCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCcc--EEEEeccCCCCcccccccc
Q 017259           20 NDKFPVFAERLTSMF------GYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~------~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~--~vi~~~~~yhg~~~~~~~~   90 (374)
                      .++++.+++++.+.+      ..+ ++++|+|+++++..+++++     ..+|     |  .|++..|+|.++...+...
T Consensus        67 ~~lr~aia~~~~~~~~~~~~~~~~~~i~it~Ga~~al~~~~~~l-----~~~g-----d~~~vlv~~P~y~~~~~~~~~~  136 (393)
T TIGR03538        67 PELRQAIARWLERRFDLPTGVDPERHVLPVNGTREALFAFAQAV-----INPG-----QAPLVVMPNPFYQIYEGAALLA  136 (393)
T ss_pred             HHHHHHHHHHHHHhhCCcccCCCCceEEECCCcHHHHHHHHHHH-----cCCC-----CcceEEecCCCCcchHHHHHhc
Confidence            445555666665542      233 6899999999999999988     4556     5  4999999997765544333


Q ss_pred             cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      +......    +...+..+  ..|++++++++.   ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+
T Consensus       137 g~~~~~v----~~~~~~~~--~~d~~~l~~~~~---~~~k~i~l~~p~NPtG~~~-s~~~~~~l~~~a~~~~~~ii~De~  206 (393)
T TIGR03538       137 GAEPYFL----NCTAENGF--LPDFDAVPESVW---RRCQLLFVCSPGNPTGAVL-SLDTLKKLIELADQYGFIIASDEC  206 (393)
T ss_pred             CCeEEEe----eccccCCC--CCCHHHHHHHHh---hcceEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCEEEEECcc
Confidence            3221111    11000000  016888888776   3688888888899999877 899999999999999999999999


Q ss_pred             ccCCccccc--Cccc----ccCC--CCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          171 QSGLARSGR--MLAS----DWEE--VRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       171 ~~~~~~~g~--~~~~----~~~~--~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      |.++.+.+.  ....    ...+  ..+.+   .||||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++
T Consensus       207 Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~vi~i~S~SK~~~~~Gl-RvG~~i~~~~l~~~~~~~~~~~~~~~~~~~q~~~  285 (393)
T TIGR03538       207 YSELYFDEGNPPAGLLQAAAQLGRDDFRRCLVFHSLSKRSNLPGL-RSGFVAGDAEILKAFLRYRTYHGCAMPIPTQLAS  285 (393)
T ss_pred             hhhcccCCCCCCcCHHHhcccccccccccEEEEecchhhcCCccc-ceEEEecCHHHHHHHHHHHHhhccCcCHHHHHHH
Confidence            997644321  1110    0111  11223   38999876 799 9999999998888876543334556677888877


Q ss_pred             HHHHHHHh-hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC
Q 017259          239 IASLDVIR-DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT  316 (374)
Q Consensus       239 ~~al~~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~  316 (374)
                      .+++..-. -....+.++++.+.+.+.|+..   + .+  ..+..|.++|+.++ .    +..++++.|+ ++||.+.|+
T Consensus       286 ~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~~---~-~~--~~p~gg~f~~~~~~-~----~~~~~~~~l~~~~gV~v~pg  354 (393)
T TIGR03538       286 IAAWNDEQHVRENRALYREKFAAVLEILGQV---L-DL--ELPDAGFYLWPKVP-G----DDEAFARALYEEENVTVLPG  354 (393)
T ss_pred             HHHhcChHHHHHHHHHHHHHHHHHHHHHHhh---C-cc--cCCCeeEEEEEECC-C----CHHHHHHHHHHHCCEEEeCC
Confidence            76663200 0122334444444555544432   1 11  13456888898887 2    4578998886 579999765


Q ss_pred             C------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          317 H------------DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       317 ~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .            .+++||++.  .+++++++++++|++.
T Consensus       355 ~~f~~~~~~~~~~~~~~Ris~~--~~~~~l~~~l~~l~~~  392 (393)
T TIGR03538       355 RFLAREAEGVNPGEGRVRIALV--APLEECVEAAERIRSF  392 (393)
T ss_pred             ccccccccCCCCCCCEEEEEec--CCHHHHHHHHHHHHHh
Confidence            2            368999944  5789999999998764

This family of succinyldiaminopimelate transaminases (DapC) includes the experimentally characterized enzyme from Bordatella pertussis. The majority of genes in this family are proximal to genes encoding components of the lysine biosynthesis via diaminopimelate pathway (GenProp0125).

>PRK14809 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4.8e-26  Score=212.25  Aligned_cols=287  Identities=16%  Similarity=0.194  Sum_probs=194.2

Q ss_pred             CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.....+|.+.+++++  ..+++++|+|+++++..+++++     .++|     |.|++.+|+|..+.......+....
T Consensus        62 Y~~~~~~~lr~~ia~~~~~~~~~I~it~G~~~al~~~~~~~-----~~~g-----d~V~v~~P~y~~~~~~~~~~g~~~~  131 (357)
T PRK14809         62 YPKASHADLTAALADRWDVSPEQVWLANGGDGALDYLARAM-----LDPG-----DTVLVPDPGFAYYGMSARYHHGEVR  131 (357)
T ss_pred             CCCCCHHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCChHHHHHHHHHcCCeEE
Confidence            33445667888888877  4568999999999999998887     5677     9999999998644433222221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+. ... .+.+++++..    ++++++++++++||+|.+. +.+.+++|+++|++ +++||+||+|.+|.
T Consensus       132 ~~----~l~~~~-~~~-~~~~~~~~~~----~~~k~i~l~~p~NPTG~~~-s~~~~~~l~~~~~~-~~~iI~De~y~~~~  199 (357)
T PRK14809        132 EY----PVSKAD-DFE-QTADTVLDAY----DGERIVYLTSPHNPTGSEI-PLDEVEALAERTDE-ETLVVVDEAYGEFA  199 (357)
T ss_pred             EE----ecccCc-CCC-cCHHHHHHhh----cCCcEEEEeCCCCCCCcCC-CHHHHHHHHHhCcc-CcEEEEechhhhcc
Confidence            00    110000 000 1455555443    2567888888999999888 78888888888865 78999999999875


Q ss_pred             ccccCccc-ccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHH
Q 017259          176 RSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER  253 (374)
Q Consensus       176 ~~g~~~~~-~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~  253 (374)
                      ..+..... ...+....+.||||.++ +|+ |+||+++++++++.+...  ..+++.+.+++.++.++++   ++++.++
T Consensus       200 ~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~~  273 (357)
T PRK14809        200 ERPSAVALVEERDDVAVLRTFSKAYGLAGL-RLGYAVVPEEWADAYARV--NTPFAASELACRAGLAALD---DDEHVER  273 (357)
T ss_pred             CCchhHHHHhhCCCEEEEecchhHhcCcch-hheeeecCHHHHHHHHHh--CCCCCCCHHHHHHHHHHhC---CHHHHHH
Confidence            43321111 11111122349999998 799 999999999998888753  2466778888888887774   2344444


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEecCCCC
Q 017259          254 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSI  329 (374)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~~  329 (374)
                      .++..+..++.+.+.....     ..++.|+++|+.++      +..++++.|.++||.+.++.    .+++|+++   .
T Consensus       274 ~~~~~~~~r~~l~~~L~~~-----~~~~~g~f~~~~~~------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRls~---~  339 (357)
T PRK14809        274 TVETARWAREYIREELDAP-----TWESAGNFVLAEVG------DASAVAEAAQERGVIVRDCTSFGLPECIRITC---G  339 (357)
T ss_pred             HHHHHHHHHHHHHHHhcCc-----cCCCCCCEEEEECC------CHHHHHHHHHHCCEEEEECccCCCCCeEEEec---C
Confidence            4444444444444433221     12356788888764      35789999999999999864    57999994   3


Q ss_pred             CHHHHHHHHHHHHHHHh
Q 017259          330 SSNELQEGSKALHDVLE  346 (374)
Q Consensus       330 ~~e~i~~~~~~l~~~~~  346 (374)
                      +++++++++++|+++++
T Consensus       340 ~~~~~~~~l~~L~~~l~  356 (357)
T PRK14809        340 TREETERAVEVLNEVLA  356 (357)
T ss_pred             CHHHHHHHHHHHHHHhc
Confidence            57899999999998875

>PRK08363 alanine aminotransferase; Validated

Probab=99.95  E-value=1.3e-25  Score=212.33  Aligned_cols=298  Identities=13%  Similarity=0.090  Sum_probs=191.9

Q ss_pred             CCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           20 NDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+...+|++.+++++        ..+++++|+|+++|+..++.++     .++|     |.|++..|+|.++...+...+
T Consensus        69 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g  138 (398)
T PRK08363         69 SEGLPELREAIVKREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-----LDPG-----DEILIPGPSYPPYTGLVKFYG  138 (398)
T ss_pred             CCCcHHHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHHcC
Confidence            344455555555543        3458999999999999999887     5677     999999999987765554443


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .......   +...+  ... .|++++++.+.   ++++++++++++|++|.+. +.+.+++|.++|+++|++||+||+|
T Consensus       139 ~~~v~~~---~~~~~--~~~-~d~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~li~Deay  208 (398)
T PRK08363        139 GVPVEYR---TIEEE--GWQ-PDIDDIRKKIT---EKTKAIAVINPNNPTGALY-EKKTLKEILDIAGEHDLPVISDEIY  208 (398)
T ss_pred             CEEEEec---ccccc--CCc-CCHHHHHhhCC---cceEEEEEECCCCCCCcCc-CHHHHHHHHHHHHHcCeEEEEhhhh
Confidence            3222110   10000  000 26888888775   4688888888899999887 7999999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcE---EEeccccc-CCccchhhhee--CHHHHhhcCCCC---CCCCCCCCHHHHHHHHHHH
Q 017259          172 SGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLA--DKEVMLCIQPGE---HGSTFGGNPLASAVAIASL  242 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~--~~~~~~~~~~~~---~~~~~~~~~~~~~aa~~al  242 (374)
                      .++...+.............+   .||||.++ +|+ |+||+++  ++++.+.+....   ....++.+.+++.++.+++
T Consensus       209 ~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~l~~~~~~~~~~~~~~s~~~q~~~~~~l  287 (398)
T PRK08363        209 DLMTYEGKHVSPGSLTKDVPVIVMNGLSKVYFATGW-RLGYIYFVDPEGKLAEVREAIDKLARIRLCPNTPAQFAAIAGL  287 (398)
T ss_pred             hhhccCCcccCHHHcCcCCcEEEEecchhccCCccc-eEEEEEEeCcHHHHHHHHHHHHHHhcccccCChHHHHHHHHHH
Confidence            976444432121111112223   38999966 799 9999887  665555443211   1224567888888888777


Q ss_pred             HHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHH-HHHHHCCeEeccCC-
Q 017259          243 DVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDIC-LKMKERGILAKPTH-  317 (374)
Q Consensus       243 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~-~~l~~~Gi~v~~~~-  317 (374)
                      ....+  .+..++++++.+.+.+.|++    +++. ....+ .+.++|+.++.... .+..+++ +.|.++||.+.++. 
T Consensus       288 ~~~~~~l~~~~~~~~~~~~~l~~~L~~----~~~~-~~~~p~g~~~~~~~l~~~~~-~~~~~~~~~~l~~~gV~v~~g~~  361 (398)
T PRK08363        288 TGPMDYLEEYMKKLKERRDYIYKRLNE----IPGI-STTKPQGAFYIFPRIEEGPW-KDDKEFVLDVLHEAHVLFVHGSG  361 (398)
T ss_pred             hCChHHHHHHHHHHHHHHHHHHHHHhc----CCCC-EecCCCeEEEEEEEeccCCC-CCHHHHHHHHHHhCCEEEeCchh
Confidence            53111  12334444444444444433    3222 22233 34555556654100 0234554 45678899998852 


Q ss_pred             -----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                           ++++||++  ..+++++++++++|++++.
T Consensus       362 f~~~~~~~iRis~--~~~~~~l~~~l~~l~~~~~  393 (398)
T PRK08363        362 FGEYGAGHFRLVF--LPPVEILEEAMDRFEEFMR  393 (398)
T ss_pred             hCCCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence                 47999995  4678999999999999887

>PLN03026 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=1.1e-25  Score=211.10  Aligned_cols=286  Identities=13%  Similarity=0.158  Sum_probs=195.4

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+|++.++++++  .+++++|+|+++++..++.++     .++|     |+|++.+|+|..+...+...+....
T Consensus        83 Yp~~~~~~lr~~ia~~~~~~~~~I~~t~Ga~~~i~~~~~~~-----~~~g-----d~Vlv~~P~y~~y~~~~~~~g~~~~  152 (380)
T PLN03026         83 YPDPESRRLRAALAEDSGLESENILVGCGADELIDLLMRCV-----LDPG-----DKIIDCPPTFGMYVFDAAVNGAEVI  152 (380)
T ss_pred             CCCCCHHHHHHHHHHHhCcChhhEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCChHHHHHHHHHcCCEEE
Confidence            555667889999999885  458999999999999998877     5667     9999999999654433332222111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+..    .|++++++++..  ++++++++++++|++|.+.+    .+++.++++.. ++||+||+|.+|.
T Consensus       153 ~v----~~~~~~~----~d~~~l~~~~~~--~~~~~v~l~~P~NPTG~~~~----~~~l~~l~~~~-~~vi~DeaY~~~~  217 (380)
T PLN03026        153 KV----PRTPDFS----LDVPRIVEAVET--HKPKLLFLTSPNNPDGSIIS----DDDLLKILELP-ILVVLDEAYIEFS  217 (380)
T ss_pred             Ee----ecCCCCC----cCHHHHHHHHhc--cCCcEEEEeCCCCCCCCCCC----HHHHHHHHhcC-CEEEEECcchhhc
Confidence            10    1100100    278899888842  47889999999999999986    66666666544 9999999999775


Q ss_pred             ccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcH
Q 017259          176 RSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKL  250 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~  250 (374)
                      ..+...  ......+.+   -||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++.++++.... ++.
T Consensus       218 ~~~~~~--~~~~~~~~viv~~SfSK~~glaGl-RiGy~~~~~~~i~~l~~~~--~~~~~~~~~q~aa~~aL~~~~~~~~~  292 (380)
T PLN03026        218 TQESRM--KWVKKYDNLIVLRTFSKRAGLAGL-RVGYGAFPLSIIEYLWRAK--QPYNVSVAAEVAACAALSNPKYLEDV  292 (380)
T ss_pred             CCcchH--HHHHhCCCEEEEecchHhhcCccc-cceeeecCHHHHHHHHHhc--CCCCCCHHHHHHHHHHhhCHHHHHHH
Confidence            433211  111112333   38999999 899 9999999999888876432  3467788888888888753110 123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEecC
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPP  326 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~  326 (374)
                      .+.++++++++.+.|+.+     +.....+..++|+|+.++...   +..+++++|.++||.++++.    .+++||++.
T Consensus       293 ~~~~~~~r~~l~~~L~~~-----~~~~~~p~~~~f~~~~~~~~~---~~~~~~~~l~~~gI~v~~~~~~~~~~~lRis~~  364 (380)
T PLN03026        293 KNALVEERERLFGLLKEV-----PFLEPYPSDANFILCRVTSGR---DAKKLKEDLAKMGVMVRHYNSKELKGYIRVSVG  364 (380)
T ss_pred             HHHHHHHHHHHHHHHHHC-----CCCeECCCCCeEEEEECCCCC---CHHHHHHHHHHCCeEEEECCCCCCCCEEEEecC
Confidence            444445555555555443     222223456788888876432   57889999999999998753    579999933


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDV  344 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~  344 (374)
                         +.+++++++++|+++
T Consensus       365 ---~~~~~~~l~~al~~~  379 (380)
T PLN03026        365 ---KPEHTDALMEALKQL  379 (380)
T ss_pred             ---CHHHHHHHHHHHHHh
Confidence               778889999888754

>TIGR01265 tyr_nico_aTase tyrosine/nicotianamine aminotransferases

Probab=99.95  E-value=1.9e-25  Score=211.37  Aligned_cols=298  Identities=15%  Similarity=0.133  Sum_probs=193.5

Q ss_pred             CCcHHHHHHHHhcccC--------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           20 NDKFPVFAERLTSMFG--------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~--------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .....++++.++++++        .+++++|+|+++|+..++.++     ..+|     |+|++.+|+|..+...+...+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~ii~t~G~t~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g  141 (403)
T TIGR01265        72 SVGALAAREAVAEYLSSDLPGKLTADDVVLTSGCSQAIEICIEAL-----ANPG-----ANILVPRPGFPLYDTRAAFSG  141 (403)
T ss_pred             CCCCHHHHHHHHHHHHhhcCCCCCHHHEEEecChHHHHHHHHHHh-----CCCC-----CEEEEeCCCchhHHHHHHHcC
Confidence            4445566666666553        358999999999999999988     4567     999999999866544333222


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .....    .+...+.. . -.|++++++.+.   ++++++++++++|++|.+. +.+.+++|.++|+++|++||+||+|
T Consensus       142 ~~~~~----~~~~~~~~-~-~~d~~~l~~~~~---~~~~~v~i~~p~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y  211 (403)
T TIGR01265       142 LEVRL----YDLLPEKD-W-EIDLDGLEALAD---EKTVAIVVINPSNPCGSVF-SRDHLQKIAEVARKLGIPIIADEIY  211 (403)
T ss_pred             CEEEE----ecCCcccC-C-ccCHHHHHHHhC---cCccEEEEecCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEEccc
Confidence            11111    01100000 0 016888888775   4678888888889999777 7899999999999999999999999


Q ss_pred             cCCcccccCc-ccccCCCCCcE---EEeccccc-CCccchhhheeC--HH-----HHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          172 SGLARSGRML-ASDWEEVRPDM---VILGKALG-GGVIPVSAVLAD--KE-----VMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       172 ~~~~~~g~~~-~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~--~~-----~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      .++.+.+..+ ....+.-...+   -||||.++ +|+ |+||++++  ++     +.+.+... ...+++.+.+++.++.
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~pGl-RiG~~v~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~  289 (403)
T TIGR01265       212 GHMVFGDAPFIPMASFASIVPVLSLGGISKRWVVPGW-RLGWIIIHDPHGIFRDTVLQGLKNL-LQRILGPATIVQGALP  289 (403)
T ss_pred             cccccCCCCccchhhhccCCcEEEEeecccccCCCcc-eEEEEEEeCchhhhHHHHHHHHHHH-hhhhcCCChHHHHHHH
Confidence            9876554321 21111111223   38999966 799 99998873  22     33333321 1124566888888888


Q ss_pred             HHHHHHhhhcHH----HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHH-HCCeE
Q 017259          240 ASLDVIRDEKLA----ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMK-ERGIL  312 (374)
Q Consensus       240 ~al~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~-~~Gi~  312 (374)
                      .+++.. .+.+.    ++++++++.+.+.|+.    ++++....+..|.|+|+.++....  ..+..++++.|+ ++||.
T Consensus       290 ~~l~~~-~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~~g~f~~~~~~~~~~~~~~~~~~~~~~l~~~~gv~  364 (403)
T TIGR01265       290 DILENT-PQEFFDGKISVLKSNAELCYEELKD----IPGLVCPKPEGAMYLMVKLELELFPEIKDDVDFCEKLVREESVI  364 (403)
T ss_pred             HHHHhC-hHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecCCCceeEEEEeccccccCCCCCHHHHHHHHHHhCCEE
Confidence            887641 22333    3344444444444432    222221234468889988864210  014678888864 77999


Q ss_pred             eccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|+.    .+++||++.  ..++.+++++++|+++++
T Consensus       365 v~pg~~f~~~~~iRis~~--~~~~~l~~~l~~l~~~~~  400 (403)
T TIGR01265       365 CLPGSAFGLPNWVRITIT--VPESMLEEACSRIKEFCE  400 (403)
T ss_pred             EeCccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            98863    689999955  568899999999999887

This subfamily of pyridoxal phosphate-dependent enzymes includes known examples of both tyrosine aminotransferase from animals and nicotianamine aminotransferase from barley.

>PRK01688 histidinol-phosphate aminotransferase; Provisional

Probab=99.95  E-value=4e-26  Score=211.97  Aligned_cols=285  Identities=16%  Similarity=0.209  Sum_probs=196.2

Q ss_pred             CCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           17 AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .|+.+...++++.+++++|.  +++++|+|+++++..+++++.     ++|    .++|++..|+|..+...+...+...
T Consensus        53 ~Yp~~~~~~l~~~~a~~~g~~~~~I~~~~Gs~e~i~~~~~~~~-----~~g----~~~vli~~P~y~~y~~~~~~~G~~~  123 (351)
T PRK01688         53 RYPECQPKAVIENYAAYAGVKPEQVLVSRGADEGIELLIRAFC-----EPG----KDAILYCPPTYGMYSVSAETIGVEI  123 (351)
T ss_pred             cCCCCChHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHhc-----CCC----CCEEEEcCCCHHHHHHHHHHcCCEE
Confidence            36677778999999998864  589999999999999998873     332    2789999999976654443333211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+..    .|++++++++.    +++++++++++||+|.+. +.+.+++|.+.|++ +++||+||+|.+|
T Consensus       124 ~~v----~~~~~~~----~d~~~l~~~~~----~~~lv~l~nPnNPTG~~~-~~~~l~~l~~~~~~-~~~vivDEay~~f  189 (351)
T PRK01688        124 RTV----PTLDNWQ----LDLPAIADNLD----GVKVVYVCSPNNPTGNLI-NPQDLRTLLELTRG-KAIVVADEAYIEF  189 (351)
T ss_pred             EEe----ecCCCCC----CCHHHHHHhcc----CCcEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECchhhc
Confidence            110    1111111    17888877763    678888989999999888 78888888888876 6889999999987


Q ss_pred             cccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh--
Q 017259          175 ARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE--  248 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~--  248 (374)
                      .....  ........++++   ||||.+| +|+ |+||+++++++++.+...  ...|+.+.+++.++.++++....+  
T Consensus       190 ~~~~s--~~~~~~~~~n~iv~rSfSK~~glaGl-RiGy~i~~~~~i~~l~~~--~~~~~v~~~~~~~a~~~L~~~~~~~~  264 (351)
T PRK01688        190 CPQAS--LAGWLAEYPHLVILRTLSKAFALAGL-RCGFTLANEEVINLLLKV--IAPYPLSTPVADIAAQALSPQGIAAM  264 (351)
T ss_pred             CCCCC--hHHHHhhCCCEEEEecchHhhcCHHH-HHhHHhCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcchHHHH
Confidence            42211  111122234543   8999999 799 999999999998888753  335667778888777777531111  


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEE
Q 017259          249 -KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVR  322 (374)
Q Consensus       249 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lR  322 (374)
                       +..+.+++.++++.+.|+.+    +++....++.++|+++.++      +..++.+.|+++||.++++.     .+++|
T Consensus       265 ~~~~~~~~~~r~~l~~~L~~~----~~~~~~~ps~~nfi~~~~~------~~~~l~~~L~~~gi~vr~~~~~~~~~~~iR  334 (351)
T PRK01688        265 RERVAEINANRQWLIAALKEI----PCVEQVFDSETNYILARFT------ASSAVFKSLWDQGIILRDQNKQPGLSNCLR  334 (351)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCCCeECCCCCcEEEEEcC------CHHHHHHHHHHCCeEEEECCCcCCCCCeEE
Confidence             22334444455555555433    2221223456778887664      36789999999999998642     57999


Q ss_pred             EecCCCCCHHHHHHHHHHHH
Q 017259          323 LTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~  342 (374)
                      |+++   +.+++++++++|+
T Consensus       335 is~~---~~~e~~~l~~al~  351 (351)
T PRK01688        335 ITIG---TREECQRVIDALR  351 (351)
T ss_pred             EeCC---CHHHHHHHHHhhC
Confidence            9944   7899999998873

>PRK05839 hypothetical protein; Provisional

Probab=99.95  E-value=8.3e-26  Score=211.66  Aligned_cols=288  Identities=13%  Similarity=0.061  Sum_probs=189.9

Q ss_pred             CCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .++++.+++.+.+.+    ..+++++|+|+++++..++.++..   .++|     +.|++..|+|..+...+...+....
T Consensus        63 ~~lr~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~~~~---~~~g-----d~vlv~~P~y~~~~~~~~~~g~~v~  134 (374)
T PRK05839         63 ESLREAQRGFFKRRFKIELKENELIPTFGTREVLFNFPQFVLF---DKQN-----PTIAYPNPFYQIYEGAAIASRAKVL  134 (374)
T ss_pred             HHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHHhc---CCCC-----CEEEECCCCchhhHHHHHhcCCEEE
Confidence            455566777776654    456899999999999888776631   1345     9999999999877666554332211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+..+ . .|+++  ..+    ++++++++++++||+|.+. +++.+++|.++|++||++||+||+|.++.
T Consensus       135 ~v----~~~~~~~~-~-~d~~~--~~~----~~~k~v~i~nP~NPTG~~~-s~~~l~~i~~~~~~~~~~ii~DE~Y~~~~  201 (374)
T PRK05839        135 LM----PLTKENDF-T-PSLNE--KEL----QEVDLVILNSPNNPTGRTL-SLEELIEWVKLALKHDFILINDECYSEIY  201 (374)
T ss_pred             Ee----ecccccCC-c-CCcch--hhh----ccccEEEEeCCCCCcCccc-CHHHHHHHHHHHHHcCCEEEeccchhhcc
Confidence            11    11000000 0 02222  222    2588888888899999888 89999999999999999999999999874


Q ss_pred             ccccCcccccC------CCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          176 RSGRMLASDWE------EVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       176 ~~g~~~~~~~~------~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ..+........      ...+.+   .||||.++ +|+ |+||+++++++.+.+........++.+.+.+.++.+++.  
T Consensus       202 ~~~~~~s~~~~~~~~~~~~~~~vi~~~SfSK~~~~~Gl-RiG~ii~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~--  278 (374)
T PRK05839        202 ENTPPPSLLEASILVGNESFKNVLVINSISKRSSAPGL-RSGFIAGDASILKKYKAYRTYLGCASPLPLQKAAAVAWL--  278 (374)
T ss_pred             cCCCCCCHhhhhcccCccccCcEEEEeccccccCCccc-eeEEEecCHHHHHHHHHHHhhcCCCCChHHHHHHHHHhc--
Confidence            32221111100      011233   38999986 799 999999999888887654333445667777777766553  


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC-------
Q 017259          246 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH-------  317 (374)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~-------  317 (374)
                       ++++.++.++..++.++.+.+..    +..  .+..|.|+|+.+++      ..++++.|.+ +||.+.|+.       
T Consensus       279 -~~~~~~~~~~~~~~~~~~~~~~l----~~~--~p~gg~fi~~~~~~------~~~~~~~l~~~~gi~v~pg~~f~~~~~  345 (374)
T PRK05839        279 -DDEHAEFFRNIYAKNLKLAREIL----GIT--IPPATFYVWLPVDN------DEEFTKKLYQNEGIKVLPGSFLGRNGI  345 (374)
T ss_pred             -cchHHHHHHHHHHHHHHHHHHhc----CCC--CCCeeEEEEEeCCC------hHHHHHHHHHHCCEEEeCchhhCCCCC
Confidence             23344443333333333333322    121  34468888887752      4688899875 899998852       


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .+++||++.  .+++++.+++++|+++++
T Consensus       346 ~~~~iRis~~--~~~~~~~~~l~~l~~~l~  373 (374)
T PRK05839        346 GKGYVRIALV--YDTPKLEKALEIIKTYLE  373 (374)
T ss_pred             CCCeEEEEec--CCHHHHHHHHHHHHHHhh
Confidence             489999954  578999999999998875

>TIGR02539 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.95  E-value=1.9e-25  Score=208.90  Aligned_cols=291  Identities=14%  Similarity=0.105  Sum_probs=195.5

Q ss_pred             CcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           21 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      +...++++.+++++|.+.+++++|+++++..++..+     .++|     |+|++..+.|++....+ ...+        
T Consensus        51 ~~~~~~~e~lA~~~g~~~~~i~~g~~~a~~~~~~~l-----~~~g-----d~Vl~~~~~h~s~~~~~-~~~g--------  111 (370)
T TIGR02539        51 PPIHDFLEDLAEFLGMDEARVTHGAREGKFAVMHAL-----CKEG-----DWVVLDGLAHYTSYVAA-ERAG--------  111 (370)
T ss_pred             hHHHHHHHHHHHHhCCCceEEECChHHHHHHHHHHh-----hCCC-----CEEEECCcccHHHHHHH-HHcC--------
Confidence            367788888999999999999999999999999888     4566     89999887765443222 2221        


Q ss_pred             CCCCCCceeccCC-------CHHHHHHHHHhc----CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259          101 GPLLPGHLKVDFG-------DITALEKIFKES----GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus       101 ~~~~~~~~~~~~~-------d~~~le~~l~~~----~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                          ..+..++++       |++++++++++.    .+++++++++++.+++|.+.+    +++|.++|++||+++|+||
T Consensus       112 ----~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lv~~~~p~~~~G~~~~----l~~i~~la~~~~~~livDe  183 (370)
T TIGR02539       112 ----LNVKEVPHTGHPEYKVDPEGYGEVIEEVEDESGKPPVLALLTHVDGEYGNLPD----AGKVAKVCREKGVPLLLNC  183 (370)
T ss_pred             ----CEEEEEecCCcccCCcCHHHHHHHHHHhhhccCCCcEEEEEECCCCCCccccC----HHHHHHHHHHcCCeEEEEC
Confidence                112223322       899999998742    136788999889999999988    9999999999999999999


Q ss_pred             cccCCcccccCcccccCCCCCcE--EEecccccCCccchhhheeCHHHHhhcCCCCCCCCC--------CCCHHHHHHHH
Q 017259          170 IQSGLARSGRMLASDWEEVRPDM--VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF--------GGNPLASAVAI  239 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~--~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~aa~  239 (374)
                      +|+.. ..+..    ......|+  .|+||++++|. |+||+++++++++.++.......+        .....++.++.
T Consensus       184 a~~~g-~~~~~----~~~~~~di~v~s~sK~~~~~g-~~G~l~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  257 (370)
T TIGR02539       184 AYTVG-RMPVS----AKEIGADFIVGSGHKSMAASG-PCGVLGMSEEWEDIVLRKSRYSPVKEVELLGCTSRGAPIVTMM  257 (370)
T ss_pred             ccccC-CcCCC----HHHcCCCEEEeeCcccccCCC-CEEEEEECHHHHhhhcccccCCccceeeeecccccccHHHHHH
Confidence            99832 11111    11223454  48899999777 899999999998888754322111        11112455556


Q ss_pred             HHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhHHHHHHHHHHCCeE-
Q 017259          240 ASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGIL-  312 (374)
Q Consensus       240 ~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~-  312 (374)
                      ++++...+. +...+..++.+++++.|++++..   +....++.++++.+.++...     .......+.+.|.++||. 
T Consensus       258 ~al~~~~~~l~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~s~t~~v~~~~~~~~~~~~~~~~~~~~~~~~L~e~GI~~  334 (370)
T TIGR02539       258 ASFPHVVERVKRWDEEVKKTRWFVAELEDIGFI---QLGQKPKEHDLVKFETPGFHEIAQKHKRRGYFLYEELKKRGIHG  334 (370)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcE---EEccCCCcCceEEEECCchhHHhhhhccccHHHHHHHHhCCCcc
Confidence            666542221 11222233355677777765311   11112345667766654210     001245799999999997 


Q ss_pred             eccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          313 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       313 v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++++..+++|++.. ..+++++++++++|+++++ ++
T Consensus       335 ir~~~~~~iRis~~-~~t~e~i~~l~~~L~~~~~-~~  369 (370)
T TIGR02539       335 IRSGQTKYFKLSVY-GLTKEQVEYVVDSFEEIVE-EY  369 (370)
T ss_pred             ccCCcceEEEEEec-CCCHHHHHHHHHHHHHHHH-hc
Confidence            77766679999963 5799999999999999887 53

Aminoacylation of tRNA(Cys) with Cys, and cysteine biosynthesis in the process, happens in Methanocaldococcus jannaschii and several other archaea by misacylation of tRNA(Cys) with O-phosphoserine (Sep), followed by modification of the phosphoserine to cysteine. In some species, direct tRNA-cys aminoacylation also occurs but this pathway is required for Cys biosynthesis. Members of this protein catalyze the second step in this two step pathway, using pyridoxal phosphate and a sulfur donor to synthesize Cys from Sep while attached to the tRNA.

>PTZ00377 alanine aminotransferase; Provisional

Probab=99.95  E-value=2.5e-25  Score=214.73  Aligned_cols=303  Identities=15%  Similarity=0.127  Sum_probs=194.7

Q ss_pred             CCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           19 YNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++.+..    ..++|++|+|+++++..++.++.    ..+|     |.|+++.|+|.++...+...+...
T Consensus       117 ~~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~----~~~g-----D~Vlv~~P~y~~y~~~~~~~g~~~  187 (481)
T PTZ00377        117 YPFVRKAVAAFIERRDGVPKDPSDIFLTDGASSGIKLLLQLLI----GDPS-----DGVMIPIPQYPLYSAAITLLGGKQ  187 (481)
T ss_pred             CHHHHHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHhc----cCCC-----CEEEECCCCchhHHHHHHHcCCEE
Confidence            3344555555555432    45689999999999999999883    1467     999999999988766655554332


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...    +...+.. .. .|+++|+++++..   ..+++++++++++||+|.+. +++.+++|+++|++||++||+||+|
T Consensus       188 v~v----~~~~~~~-~~-~d~~~l~~~l~~~~~~~~~~k~l~l~~P~NPTG~~~-s~e~~~~i~~~a~~~~~~iI~De~Y  260 (481)
T PTZ00377        188 VPY----YLDEEKG-WS-LDQEELEEAYEQAVRNGITPRALVVINPGNPTGQVL-TRDVMEEIIKFCYEKGIVLMADEVY  260 (481)
T ss_pred             EEE----EeccccC-CC-CCHHHHHHHHHHHHhcCCCeeEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhh
Confidence            221    1100000 00 1789999988742   13688888878889999887 8999999999999999999999999


Q ss_pred             cCCcccc-cCc-ccc-c-CCCC------CcEE---Eecccc-c-CCccchhhhee---CHHHHhhcCCCCCCCCCCCCHH
Q 017259          172 SGLARSG-RML-ASD-W-EEVR------PDMV---ILGKAL-G-GGVIPVSAVLA---DKEVMLCIQPGEHGSTFGGNPL  233 (374)
Q Consensus       172 ~~~~~~g-~~~-~~~-~-~~~~------~d~~---s~sK~~-~-~G~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~  233 (374)
                      ..+.+.+ ..+ ++. . .+..      ..++   ||||.+ + +|+ |+||+++   ++++++.+.... ...++.+.+
T Consensus       261 ~~l~~~~~~~~~s~~~~~~~l~~~~~~~~~vi~~~S~SK~~~~~~Gl-RiG~~~~~~~p~~li~~l~~~~-~~~~~~~~~  338 (481)
T PTZ00377        261 QENIYDGEKPFISFRKVLLELPAEYNTDVELVSFHSTSKGIIGECGR-RGGYFELTNIPPEVREQIYKLA-SINLCSNVV  338 (481)
T ss_pred             HhhccCCCCCcccHHHHHHhhcccccCCeEEEEEecCCcccccCCcC-ceEEEEEeCCCHHHHHHHHHHh-heecCCChH
Confidence            9765432 221 110 0 0111      1233   899986 5 699 9999886   788888886543 234467889


Q ss_pred             HHHHHHHHHHHHh--h---hcHHHH-------HHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEec--cCCCc--
Q 017259          234 ASAVAIASLDVIR--D---EKLAER-------SAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFD--KTALP--  296 (374)
Q Consensus       234 ~~~aa~~al~~~~--~---~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~--~~~~~--  296 (374)
                      ++.++.++++...  +   +.+.++       ++++++.+.+.|+.    +++ +....+ .|.|+|+.++  .....  
T Consensus       339 ~Q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~----~~g-~~~~~p~gg~fl~~~~~l~~~~~~~~  413 (481)
T PTZ00377        339 GQLMTGLMCNPPREGDASYPLYKRERDAIFTSLKRRAELLTDELNK----IEG-VSCQPVEGAMYAFPRIELPEKAIQEA  413 (481)
T ss_pred             HHHHHHHHhCCCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-cEeecCCeeEEEEeeccCchhhHHHH
Confidence            9999888874210  0   112222       33334444444433    332 222333 4566665543  11000  


Q ss_pred             -----hhHHHHHHH-HHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          297 -----VSAYDICLK-MKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       297 -----~~~~~~~~~-l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                           .+..+++.. |.++||.+.|+.       .+++|+++.  .+++++++++++|+++++
T Consensus       414 ~~~~~~~~~~~~~~ll~~~gV~v~pG~~F~~~~~~~~~Rls~~--~~~e~l~~~l~rl~~~~~  474 (481)
T PTZ00377        414 KERGLAPDVLYCLELLESTGIVVVPGSGFGQKPGTYHFRITIL--PPEEQIEEMVKKIKEFHE  474 (481)
T ss_pred             HhcCCCcHHHHHHHHHHHcCEEEeCCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH
Confidence                 012344444 456799998863       358999954  678899999999999887

>PRK00950 histidinol-phosphate aminotransferase; Validated

Probab=99.95  E-value=1.9e-25  Score=208.74  Aligned_cols=285  Identities=16%  Similarity=0.196  Sum_probs=192.7

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      |+.+...++++.++++++.  +++++ ++|+++++..+++++     .++|     |+|++..|+|..+.......+...
T Consensus        66 y~~~~~~~lr~~ia~~~~~~~~~i~~~~~Ga~~~i~~~~~~~-----~~~g-----d~vlv~~p~y~~~~~~~~~~g~~~  135 (361)
T PRK00950         66 YPEPDAPELREALSKYTGVPVENIIVGGDGMDEVIDTLMRTF-----IDPG-----DEVIIPTPTFSYYEISAKAHGAKP  135 (361)
T ss_pred             CCCCCHHHHHHHHHHHhCCCHHHEEEeCCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCChHHHHHHHHHcCCEE
Confidence            4455668899999998865  57888 677778888887766     4567     999999999866544333222211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+.    ..|++++++.+.   ++++++++++++|++|.+.+    .+++.++|+++|+++|+||+|.++
T Consensus       136 ~~~----~~~~~~----~~~~~~l~~~~~---~~~~~v~~~~p~nptG~~~~----~~~l~~l~~~~~~~li~De~y~~~  200 (361)
T PRK00950        136 VYA----KREEDF----SLDVDSVLNAIT---EKTKVIFLCTPNNPTGNLIP----EEDIRKILESTDALVFVDEAYVEF  200 (361)
T ss_pred             EEe----ecCCCC----CcCHHHHHHHhc---cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCcEEEEECchhhh
Confidence            110    100110    126888888775   46788888888999999998    888999999999999999999877


Q ss_pred             cccccCccc-ccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHH
Q 017259          175 ARSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE  252 (374)
Q Consensus       175 ~~~g~~~~~-~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~  252 (374)
                      . .+..... ...+....+.||||.++ +|+ |+||+++++++.+.++..  ...++.+.+++.++.++++   +.++.+
T Consensus       201 ~-~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a~~~l~---~~~~~~  273 (361)
T PRK00950        201 A-EYDYTPLALEYDNLIIGRTFSKVFGLAGL-RIGYGFVPEWLIDYYMRA--KTPFSLTRLSQAAAIAALS---DKEYIE  273 (361)
T ss_pred             C-ccchHHHHHhcCCEEEEEeehHhhcCchh-hcchhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhc---CHHHHH
Confidence            4 1111111 11111111239999998 799 999999999988877653  2345567888887777765   233444


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEecC
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPP  326 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~  326 (374)
                      +..+..+..++.+.+... +    ...++.+.++|+.++..    +..++++.|.++||.++++.      .+++|++++
T Consensus       274 ~~~~~~~~~r~~l~~~l~-~----~~~~~~~~~i~~~~~~~----~~~~~~~~l~~~gv~v~~~~~f~~~~~~~lRis~~  344 (361)
T PRK00950        274 KSIEHGIKSREYLYNELP-F----KVYPSEANFVLVDVTPM----TAKEFCEELLKRGVIVRDCTSFRGLGDYYIRVSIG  344 (361)
T ss_pred             HHHHHHHHHHHHHHhhcC-e----eECCCcceEEEEECCCC----CHHHHHHHHHHCCEEEeeCCccCCCCCCeEEEECC
Confidence            444444444444332221 1    11234567888877432    67899999999999998742      468999944


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 017259          327 LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~~  346 (374)
                         +.+++++++++|+++++
T Consensus       345 ---~~~~~~~l~~~L~~il~  361 (361)
T PRK00950        345 ---TFEENERFLEILKEIVE  361 (361)
T ss_pred             ---CHHHHHHHHHHHHHHhC
Confidence               78899999999998763

>PLN02450 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=2.2e-25  Score=213.64  Aligned_cols=305  Identities=17%  Similarity=0.082  Sum_probs=195.6

Q ss_pred             CCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++++.+++.+.+..      ..++|++|+|+++++..++.++     ..+|     |.|++..|+|.++........+.
T Consensus        89 ~~LR~aiA~~l~~~~~~~~~v~~~~Iiit~Ga~~al~~l~~~l-----~~pG-----d~Vlv~~P~Y~~~~~~~~~~~g~  158 (468)
T PLN02450         89 PAFKNALAEFMSEIRGNKVTFDPNKLVLTAGATSANETLMFCL-----AEPG-----DAFLLPTPYYPGFDRDLKWRTGV  158 (468)
T ss_pred             HHHHHHHHHHHHHhhCCCCCcChHHeEEccChHHHHHHHHHHh-----CCCC-----CEEEECCCCCCchHHHHhhcCCc
Confidence            345555666665432      4568999999999999998888     5677     99999999998775544322221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      .....   +...+ .... .|++++++++++   .+.+++++++++++||+|.+. +++.+++|.++|++||++||+||+
T Consensus       159 ~~v~v---~~~~~-~~~~-~~~~~le~~~~~~~~~~~~~k~v~l~nP~NPTG~~~-s~e~l~~ll~~a~~~~~~iI~DE~  232 (468)
T PLN02450        159 EIVPI---HCSSS-NGFQ-ITESALEEAYQQAQKLNLKVKGVLITNPSNPLGTTT-TRTELNLLVDFITAKNIHLISDEI  232 (468)
T ss_pred             EEEEE---ecCCc-cCCc-CCHHHHHHHHHHHHhcCCCeeEEEEecCCCCCCccc-CHHHHHHHHHHHHHCCcEEEEEcc
Confidence            11100   10000 0001 167888888764   234788888888899999887 899999999999999999999999


Q ss_pred             ccCCcccccCccc--ccC------C--CCCc---EEEeccccc-CCccchhhheeCHH-HHhhcCCCCCCCCCCCCHHHH
Q 017259          171 QSGLARSGRMLAS--DWE------E--VRPD---MVILGKALG-GGVIPVSAVLADKE-VMLCIQPGEHGSTFGGNPLAS  235 (374)
Q Consensus       171 ~~~~~~~g~~~~~--~~~------~--~~~d---~~s~sK~~~-~G~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~  235 (374)
                      |+++.+.+..+..  ...      +  ....   +.||||.++ +|+ |+||++++++ +.+.+...  ......+.+++
T Consensus       233 Y~~~~f~~~~~~s~l~~~~~~~~~~~~~~~~vi~l~S~SK~~~l~Gl-RiG~li~~~~~l~~~~~~~--~~~~~~s~~~Q  309 (468)
T PLN02450        233 YSGTVFDSPGFVSVMEVLKDRKLENTDVSNRVHIVYSLSKDLGLPGF-RVGAIYSNDEMVVSAATKM--SSFGLVSSQTQ  309 (468)
T ss_pred             ccccccCCCCcccHHHHhhhcccccCCCCCcEEEEEeccccCCCCCc-cEEEEEECCHHHHHHHHHH--hhcCCCCHHHH
Confidence            9976444432211  111      0  1122   339999998 899 9999998744 45554432  11223577888


Q ss_pred             HHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---chhHHHHHHHHH
Q 017259          236 AVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKMK  307 (374)
Q Consensus       236 ~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~  307 (374)
                      .++.++++...-     ++.+++++++++.+.+.|++.     ++.......|.|+|+.++....   -....++.+.|+
T Consensus       310 ~a~~~~L~~~~~~~~~l~~~~~~l~~rr~~l~~~L~~~-----gi~~~~~~~g~flwi~l~~~~~~~~~~~~~~l~~~ll  384 (468)
T PLN02450        310 YLLSALLSDKKFTKNYLEENQKRLKQRQKKLVSGLEAA-----GIKCLKSNAGLFCWVDMRHLLKSNTFEAEMELWKKIV  384 (468)
T ss_pred             HHHHHHhCCchhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCcccCCCceEEEEEEchHhcCcCCchHHHHHHHHHH
Confidence            887777653110     112333334444444444332     2322223356788888753210   012345777776


Q ss_pred             H-CCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          308 E-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       308 ~-~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      + .||.+.|+.      .+++||+++. .+++++++++++|+++++ ...
T Consensus       385 ~~~gV~v~PG~~f~~~~~g~~Rl~f~~-~~~~~l~~~l~ri~~~l~-~~~  432 (468)
T PLN02450        385 YEVKLNISPGSSCHCTEPGWFRVCFAN-MSEETLDLAMKRLKSFVE-SDS  432 (468)
T ss_pred             HhCCEEEeCccccCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH-hcc
Confidence            5 699998863      5799999443 478999999999999998 554

>KOG0259 consensus Tyrosine aminotransferase [Amino acid transport and metabolism]

Probab=99.94  E-value=5.3e-25  Score=192.77  Aligned_cols=320  Identities=15%  Similarity=0.135  Sum_probs=211.1

Q ss_pred             hHHHHHHHhccc--cC-cCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTL--SS-RAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +||.+++..+..  +. +.+....++.+++++-.-.    ..+.+++|+|+++|++.++.++     .++|     -+|+
T Consensus        85 ~Av~~al~Sgk~N~Yaps~G~~~AR~AVAeYl~~~l~~kl~a~DV~ltsGC~qAIe~~i~~L-----A~p~-----aNIL  154 (447)
T KOG0259|consen   85 QAVVDALRSGKGNGYAPSVGILPARRAVAEYLNRDLPNKLTADDVVLTSGCSQAIELAISSL-----ANPG-----ANIL  154 (447)
T ss_pred             HHHHHHHhcCCCCCcCCccccHHHHHHHHHHhhcCCCCccCcCceEEeccchHHHHHHHHHh-----cCCC-----Ccee
Confidence            677777765322  22 2344555566666654432    5679999999999999999999     5677     9999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      +++|+|.-+...+.. .+-...+..+-|. .++..    |++.+|..++   ++|.++++.+++||.|+++ |++.|++|
T Consensus       155 lPrPGfp~Y~~~a~~-~~lEVR~ydlLPe-~~weI----DL~~veal~D---ENT~AivviNP~NPcGnVy-s~~HL~ki  224 (447)
T KOG0259|consen  155 LPRPGFPLYDTRAIY-SGLEVRYYDLLPE-KDWEI----DLDGVEALAD---ENTVAIVVINPNNPCGNVY-SEDHLKKI  224 (447)
T ss_pred             cCCCCCchHHHhhhh-cCceeEeecccCc-cccee----chHHHHHhhc---cCeeEEEEeCCCCCCcccc-cHHHHHHH
Confidence            999999544333222 2222222222111 12333    8999998887   6899999999999999988 99999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCcc-cc-cCCCCCcEE--Eeccc-ccCCccchhhheeCHH--------HHhhcCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLA-SD-WEEVRPDMV--ILGKA-LGGGVIPVSAVLADKE--------VMLCIQP  221 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~-~~-~~~~~~d~~--s~sK~-~~~G~~~~G~~~~~~~--------~~~~~~~  221 (374)
                      +++|+++++++|.||+|..+.+.+.+|. .. ...+.|-+.  ++||. +-+|| |+||++..+.        +.+.+..
T Consensus       225 ae~A~klgi~vIaDEVY~~~vfg~~pfvpmg~fssiVPVitlggisKrW~VPGW-RlGWi~~hD~~gvf~~~~~~q~~~~  303 (447)
T KOG0259|consen  225 AETAKKLGIMVIADEVYGHTVFGDKPFVPMGKFSSIVPVITLGGISKRWIVPGW-RLGWIALHDPRGVFRDTKVVQGIKN  303 (447)
T ss_pred             HHHHHHhCCeEEehhhcceeecCCCCccchhhccccCceEeecccccccccCCc-eeeeEEEecccccccchHHHHHHHH
Confidence            9999999999999999997655555432 22 234555333  67785 55999 9999877542        1112221


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEeccCC--C
Q 017259          222 GEHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTA--L  295 (374)
Q Consensus       222 ~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~--~  295 (374)
                       ....+..++++.|+|.-..|+.-.++   .-..-++.+.+...++|+++    |.......+.|.++ ++.+.-..  .
T Consensus       304 -~~~~~~~p~TiiQ~AlP~IL~kTp~efF~k~~~~lk~na~l~y~~Lk~I----P~l~cp~kPeg~mylmv~l~~s~~~~  378 (447)
T KOG0259|consen  304 -FLDIIPGPATIIQGALPDILEKTPEEFFDKKLSFLKSNADLCYSRLKDI----PCLTCPVKPEGCMYLMVKLNLSLFPD  378 (447)
T ss_pred             -HHhccCCccHhHHHHhHHHHHhChHHHHHHHHHHHHhhHHHHHHHHhcC----CCcccCcCCCcceEEEeccchhhhcc
Confidence             12334566778888777766654332   22344555566666666554    43332444444433 33331110  0


Q ss_pred             chhHHHHHHHHH-HCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          296 PVSAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       296 ~~~~~~~~~~l~-~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      -.+..+|++.|. |+.+++-|+    .++|+|++  .....+.+++++++|++..+ +..
T Consensus       379 ~~dD~dFc~kL~~Eesv~~LPG~af~~~nw~Ri~--i~~~~~~leea~~Rik~Fc~-RH~  435 (447)
T KOG0259|consen  379 IEDDVDFCQKLAREESVICLPGQAFGLKNWLRIV--ITVEEEMLEEAFSRIKEFCD-RHS  435 (447)
T ss_pred             ccccHHHHHHHhhhcceEEeccccccCCCeEEEE--EccChHHHHHHHHHHHHHHH-hhh
Confidence            114567888886 668999886    38999999  66788999999999999998 654

>PRK09105 putative aminotransferase; Provisional

Probab=99.94  E-value=1.9e-25  Score=208.57  Aligned_cols=285  Identities=15%  Similarity=0.119  Sum_probs=193.5

Q ss_pred             CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+|.+.+++++  ..++|++|+|+++++..++..+     ..+|     |+|++.+|+|.++...+...+....
T Consensus        75 Y~~~~~~~Lr~aia~~~~v~~e~I~it~Gs~~ai~~~~~~l-----~~~g-----d~Vli~~P~y~~~~~~~~~~g~~~~  144 (370)
T PRK09105         75 YDLELEDDLRTLFAAQEGLPADHVMAYAGSSEPLNYAVLAF-----TSPT-----AGLVTADPTYEAGWRAADAQGAPVA  144 (370)
T ss_pred             CCCchHHHHHHHHHHHhCcChhhEEEcCChHHHHHHHHHHH-----cCCC-----CEEEEeCCChHHHHHHHHHcCCeEE
Confidence            44445778889999887  4568999999999999999888     4567     9999999999776554443332111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+..    .|++++++. .   ++++++++++++||+|.+. +.++++++.+.|+ ++++||+||+|.+|.
T Consensus       145 ~v----~~~~~~~----~d~~~l~~~-~---~~~~~v~l~nP~NPTG~~~-~~~~l~~l~~~~~-~~~~lIvDEaY~~f~  210 (370)
T PRK09105        145 KV----PLRADGA----HDVKAMLAA-D---PNAGLIYICNPNNPTGTVT-PRADIEWLLANKP-AGSVLLVDEAYIHFS  210 (370)
T ss_pred             Ee----cCCCCCC----CCHHHHHhc-C---CCCCEEEEeCCCCCCCcCc-CHHHHHHHHHhCC-CCcEEEEECchHHhc
Confidence            11    1111110    267777654 2   4678888888899999887 7888888888754 599999999998764


Q ss_pred             ccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhcH
Q 017259          176 RSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKL  250 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~~  250 (374)
                      ..  .......+..++++   ||||.++ .|+ |+||+++++++++.+...   ..+..+.+++.++.++++... .+..
T Consensus       211 ~~--~s~~~~~~~~~~vi~~~SfSK~~g~~Gl-RiG~~v~~~~~i~~l~~~---~~~~~~~~~~~aa~~~L~~~~~~~~~  284 (370)
T PRK09105        211 DA--PSVVDLVAQRKDLIVLRTFSKLYGMAGM-RLGLAAARPDLLAKLARF---GHNPLPVPAAAAGLASLRDPKLVPQR  284 (370)
T ss_pred             cC--cchHHHHhhCCCEEEEecccHhhcCCcc-ceeeeecCHHHHHHHHhc---CCCCcCHHHHHHHHHHHhCHHHHHHH
Confidence            21  11112222234433   8999998 799 999999999998888754   344567778778777775310 0123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---CCCEEEEecCC
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPL  327 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~~~~lRi~~~~  327 (374)
                      .++++++++++.+.|+..     ++. ..++.+.++++.++.     +..++++.|.++||.++..   .++++||++  
T Consensus       285 ~~~~~~~r~~l~~~L~~~-----g~~-~~~~~~~f~~~~~~~-----~~~~l~~~L~~~gI~v~~~~~~~~~~~Ris~--  351 (370)
T PRK09105        285 RAENAAVREDTIAWLKKK-----GYK-CTPSQANCFMVDVKR-----PAKAVADAMAKQGVFIGRSWPIWPNWVRVTV--  351 (370)
T ss_pred             HHHHHHHHHHHHHHHHHC-----CCC-cCCCCCcEEEEeCCC-----CHHHHHHHHHHCCcEEecCCCCCCCeEEEEc--
Confidence            344555555555555543     221 123456677665542     5688999999999999432   268999993  


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 017259          328 SISSNELQEGSKALHDVLE  346 (374)
Q Consensus       328 ~~~~e~i~~~~~~l~~~~~  346 (374)
                       .+++++++++++|+++++
T Consensus       352 -~~~~~~~~l~~al~~~~~  369 (370)
T PRK09105        352 -GSEEEMAAFRSAFAKVMR  369 (370)
T ss_pred             -CCHHHHHHHHHHHHHHhh
Confidence             368889999999987764

>PRK08056 threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=2.6e-25  Score=207.05  Aligned_cols=290  Identities=14%  Similarity=0.139  Sum_probs=189.5

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++.+.++++++  .+++++|+|+++++..++..+.      +|     + +++..|+|..+...+...+....
T Consensus        52 y~~~~~~~lr~~ia~~~~~~~~~i~it~Ga~~~l~~~~~~l~------~g-----~-viv~~P~y~~~~~~~~~~g~~~~  119 (356)
T PRK08056         52 YPDVEYRHLHQALARHHQVPASWILAGNGETESIFAVVSGLK------PR-----R-AMIVTPGFAEYRRALQQVGCEIR  119 (356)
T ss_pred             CcCccHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHhC------CC-----C-EEEeCCCcHHHHHHHHHcCCeEE
Confidence            444457788888988874  4689999999999998887651      23     5 67778998665544333322111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+... . .| +++.+.+.   ++++++++++++||+|.+. +++.+++|+++|++|+++||+||+|.+|.
T Consensus       120 ~v----~~~~~~~~-~-~~-~~~~~~~~---~~~k~v~l~~p~NPTG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~  188 (356)
T PRK08056        120 RY----SLREADGW-Q-LT-DAILEALT---PDLDCLFLCTPNNPTGLLP-ERQLLQAIAERCKSLNIALILDEAFIDFI  188 (356)
T ss_pred             EE----ecccccCC-C-cc-HHHHHhcc---CCCCEEEEeCCcCCCCCCC-CHHHHHHHHHHHHhcCCEEEEecchhccC
Confidence            11    00000000 0 02 34444443   5788899988999999866 89999999999999999999999999875


Q ss_pred             ccccCc-c-cccCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhcH
Q 017259          176 RSGRML-A-SDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKL  250 (374)
Q Consensus       176 ~~g~~~-~-~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~~  250 (374)
                      ..+..+ . ........-+.||||.++ +|+ |+||+++ ++++.+.+...  ...++.+.+++.++..+++.-. ....
T Consensus       189 ~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~v~~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~  265 (356)
T PRK08056        189 PDETGFIPQLADNPHLWVLRSLTKFYAIPGL-RLGYLVNSDDAAVARMRRQ--QMPWSINAFAALAGEVILQDRAYQQAT  265 (356)
T ss_pred             CcchHHHHHhccCCCEEEEEechhhccCcch-hheeeecCCHHHHHHHHHh--CCCCchhHHHHHHHHHHhCCHHHHHHH
Confidence            443211 1 111111111338999999 899 9999987 45676766542  3346667777777776664100 0123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEe
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLT  324 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~  324 (374)
                      .+.++++++++.+.|+.    +++. ...++.+.|+|+.++.     +..++++.|.++||.++++.      ++++||+
T Consensus       266 ~~~~~~~r~~l~~~L~~----~~~~-~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis  335 (356)
T PRK08056        266 WQWLAEEGARFYQALCA----LPLL-TVWPGRANYLFLRCER-----PDIDLQRALLTQRILIRSCANYPGLDSRYYRVA  335 (356)
T ss_pred             HHHHHHHHHHHHHHHhc----CCCc-EEcCCCCcEEEEEcCC-----ChHHHHHHHHHCCeEEEECCCCCCCCCCEEEEE
Confidence            34444555555555543    3222 2234467888887763     35689999999999998753      3699999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 017259          325 PPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       325 ~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         ..+.++.+.++++|+++++
T Consensus       336 ---~~~~~~~~~l~~~l~~~~~  354 (356)
T PRK08056        336 ---IRSAAENERLLAALRNVLT  354 (356)
T ss_pred             ---EcCHHHHHHHHHHHHHHHc
Confidence               4478899999999988765

>PRK03321 putative aminotransferase; Provisional

Probab=99.94  E-value=1.6e-25  Score=208.47  Aligned_cols=285  Identities=18%  Similarity=0.210  Sum_probs=195.0

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++++|+++++..++..+     .++|     |+|++..|+|..+.......+....
T Consensus        54 y~~~g~~~lr~~ia~~~~~~~~~I~~~~G~~~~l~~~~~~~-----~~~g-----d~Vli~~p~y~~~~~~~~~~g~~~~  123 (352)
T PRK03321         54 YPDMGAVELRAALAEHLGVPPEHVAVGCGSVALCQQLVQAT-----AGPG-----DEVIFAWRSFEAYPILVQVAGATPV  123 (352)
T ss_pred             CCCCcHHHHHHHHHHHhCcCHHHEEECCCHHHHHHHHHHHh-----cCCC-----CEEEeCCCCHHHHHHHHHHcCCEEE
Confidence            4456788899999998754  47999999998888887766     5667     9999999988543322222211100


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh--cCCEEEEeccccC
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIADEIQSG  173 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~--~~i~li~Dea~~~  173 (374)
                          ..+...+.    ..|++++++.++   ++++++++++++|++|.+.+    .++|.++|+.  ++++||+||+|.+
T Consensus       124 ----~v~~~~~~----~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~~----~~~l~~l~~~~~~~~~ii~De~y~~  188 (352)
T PRK03321        124 ----QVPLTPDH----THDLDAMAAAIT---DRTRLIFVCNPNNPTGTVVT----PAELARFLDAVPADVLVVLDEAYVE  188 (352)
T ss_pred             ----EccCCCCC----CCCHHHHHHhhc---cCCCEEEEeCCCCCcCCCcC----HHHHHHHHHhCCCCeEEEEechHHH
Confidence                11111110    127888888886   46788888888999999886    5566666655  6999999999997


Q ss_pred             CcccccC-cccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 LARSGRM-LASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 ~~~~g~~-~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +.+.+.. .........++++   ||||.++ +|+ |+||+++++++++.+...  ...++.+.+++.++.++++..  +
T Consensus       189 ~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RiG~~v~~~~~~~~~~~~--~~~~~~s~~~q~~a~~~l~~~--~  263 (352)
T PRK03321        189 YVRDDDVPDGLELVRDHPNVVVLRTFSKAYGLAGL-RVGYAVGHPEVIAALRKV--AVPFSVNSLAQAAAIASLAAE--D  263 (352)
T ss_pred             hccCcCCCcHHHHHhhCCCEEEEecchHHhhhHHH-hhhhhcCCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCH--H
Confidence            7544321 1111122234444   8999998 799 999999999999888753  346778899998888877532  2


Q ss_pred             cHHHHHHHH---HHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEec
Q 017259          249 KLAERSAHL---GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP  325 (374)
Q Consensus       249 ~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~  325 (374)
                      .+.++.+..   .+++.+.|+..     +... .++.|.++|+.++.     +..++++.|.++||.+.+.+.+++||+ 
T Consensus       264 ~~~~~~~~~~~~r~~~~~~L~~~-----~~~~-~~~~g~~i~i~l~~-----~~~~~~~~l~~~gI~v~~~~~~~iRi~-  331 (352)
T PRK03321        264 ELLERVDAVVAERDRVRAALRAA-----GWTV-PPSQANFVWLPLGE-----RTADFAAAAAEAGVVVRPFAGEGVRVT-  331 (352)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHC-----CCcc-CCCCCCEEEEeCCC-----CHHHHHHHHHHCCEEEEccCCCcEEEe-
Confidence            333333333   33333333332     2211 23457888887743     467899999999999998767789999 


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 017259          326 PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        ..+.+++++++++|+++++
T Consensus       332 --~~~~~~~~~~~~al~~~~~  350 (352)
T PRK03321        332 --IGAPEENDAFLRAARAWRA  350 (352)
T ss_pred             --eCCHHHHHHHHHHHHHHhc
Confidence              4688999999999998875

>TIGR03392 FeS_syn_CsdA cysteine desulfurase, catalytic subunit CsdA

Probab=99.94  E-value=8.6e-25  Score=206.88  Aligned_cols=295  Identities=14%  Similarity=0.155  Sum_probs=196.3

Q ss_pred             cHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           22 KFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+++++.+++++|.   +++++|+|++++++.++..+.... .++|     |+|++.++.|++............+...
T Consensus        61 ~~~~~r~~la~~~g~~~~~~i~~t~g~t~~l~~~~~~~~~~~-~~~g-----d~Vl~~~~~~~s~~~~~~~~~~~~g~~v  134 (398)
T TIGR03392        61 RYELARQQVARFLNAPDAENIVWTRGTTESINLVAQSYARPR-LQPG-----DEIIVSEAEHHANLIPWLMVAQQTGAKV  134 (398)
T ss_pred             HHHHHHHHHHHHhCCCCCCeEEEeCChHHHHHHHHHHhhhcc-CCCC-----CEEEECCcchhHHHHHHHHHHHHcCcEE
Confidence            456788889988764   479999999999999988773111 3566     9999999998764222211110001110


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                      .+.+...+.    ..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++++|++|+.. .. 
T Consensus       135 ~~v~~~~~~----~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~~-~~-  201 (398)
T TIGR03392       135 VKLPIGADL----LPDIRQLPELLT---PRTRILALGQMSNVTGGCPD----LARAITLAHQYGAVVVVDGAQGVV-HG-  201 (398)
T ss_pred             EEEecCCCC----CcCHHHHHHHhc---cCceEEEEECccccccccCC----HHHHHHHHHHcCCEEEEEhhhhcC-CC-
Confidence            011110110    026889998886   57899999999999999998    999999999999999999999722 11 


Q ss_pred             cCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC------------------C---CCCCHHHH
Q 017259          179 RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS------------------T---FGGNPLAS  235 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~------------------~---~~~~~~~~  235 (374)
                         ..+.....+|+.++|  |.++ .. ++|+++.++++.+.+.+...+.                  .   .+.+..+.
T Consensus       202 ---~~~~~~~~~d~~~~s~~K~~g-p~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~GT~~~~~~  276 (398)
T TIGR03392       202 ---PPDVQALDIDFYAFSGHKLYG-PT-GIGVLYGKTELLEAMPPWQGGGKMLSHVSFDGFIPQAVPHRFEAGTPNIAGV  276 (398)
T ss_pred             ---CCChhhcCCCEEEEecccccC-CC-ceEEEEEcHHHHhhCCCeecCCceEeeccccccccCCChhhccCCCCCHHHH
Confidence               112223456887777  9665 33 5788989988877775432110                  0   13455677


Q ss_pred             HHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          236 AVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       236 ~aa~~al~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      .++.++++.+.+.+   ..++.++..+++++.|++    +|++.......+.++.|.++..    +..++.+.|.++||.
T Consensus       277 ~a~~~al~~l~~~g~~~i~~~~~~l~~~l~~~l~~----l~g~~~~~~~~~~i~~~~~~~~----~~~~l~~~L~~~gI~  348 (398)
T TIGR03392       277 IGLSAALEWLTDIDIAAAEAWSVSLADLAEERLAQ----LPGFRSFRCPGSSLLAFDFAGV----HHSDLAALLAESGIA  348 (398)
T ss_pred             HHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCCCCcEEEEEeCCc----CHHHHHHHHHhCCEE
Confidence            77778887765543   334444444444444433    3333211112345666666543    567899999999999


Q ss_pred             eccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          313 AKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       313 v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.+.            .+++|++++..+|++|++++++.|+++++ .+
T Consensus       349 v~~g~~~~~~~~~~~g~~~~iRvS~~~~~t~~ei~~l~~~l~~~~~-~~  396 (398)
T TIGR03392       349 LRAGQHCAQPLMAALGVSGTLRASFAPYNTQQDVDALVDAVGAALE-LL  396 (398)
T ss_pred             EecCccchHHHHHHhCCCCEEEEEeeccCCHHHHHHHHHHHHHHHH-Hh
Confidence            98653            46899999999999999999999999887 53

Members of this protein family are CsdS. This protein, found Escherichia coli, Yersinia pestis, Photorhabdus luminescens, and related species, and related to SufS, works together with and physically interacts with CsdE (a paralog of SufE). CsdA has cysteine desulfurase activity that is enhanced by CsdE, a sulfur acceptor protein. This gene pair, although involved in FeS cluster biosynthesis, is not found next to other such genes as are its paralogs from the Suf or Isc systems.

>PRK09440 avtA valine--pyruvate transaminase; Provisional

Probab=99.94  E-value=1.4e-25  Score=213.33  Aligned_cols=305  Identities=14%  Similarity=0.110  Sum_probs=195.2

Q ss_pred             CCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE-eccCCCCcccccccccCCc
Q 017259           20 NDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS-CCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~-~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++++.+++++.+.+    ..++|++|+|+++++..++.++....--.+|     |.|++ ..|+|+++...+.......
T Consensus        77 ~~LR~aia~~~~~~~g~~v~~~~I~it~Ga~~al~~~~~~l~~~~~~~~g-----d~v~i~~~P~y~~y~~~~~~~~~~~  151 (416)
T PRK09440         77 DELIEALAALLNERYGWNISPQNIALTNGSQSAFFYLFNLFAGRRADGSL-----KKILFPLAPEYIGYADAGLEEDLFV  151 (416)
T ss_pred             HHHHHHHHHHHHHHhCCCCChhhEEEccChHHHHHHHHHHHhccccCCCC-----CeEEEecCCCchhhHHHhhccCcee
Confidence            345556666665543    4468999999999999999888421000234     88999 7999988765332111000


Q ss_pred             cccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      .......+.  +.....+ .|+++++  +.   ++++++++++++||||.+. +.+.+++|.++|++||++||+||+|..
T Consensus       152 ~~~~~~~~~--~~~~~~~~~d~~~l~--~~---~~~~~i~l~~P~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~  223 (416)
T PRK09440        152 SYRPNIELL--PEGQFKYHVDFEHLH--ID---EDTGAICVSRPTNPTGNVL-TDEELEKLDALARQHNIPLLIDNAYGP  223 (416)
T ss_pred             ecccccccc--cccccccCCCHHHcc--cC---CCceEEEEecCCCCCCccC-CHHHHHHHHHHHHHcCCcEEEeCCccc
Confidence            000001111  0000011 1677776  22   4678888888899999888 899999999999999999999999974


Q ss_pred             CcccccCcccccCCCCCc---EEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc-
Q 017259          174 LARSGRMLASDWEEVRPD---MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK-  249 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d---~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~-  249 (374)
                      +........... ...+.   +.||||...+|+ |+||+++++++++.+........++.+.+++.++.++++...-.. 
T Consensus       224 ~~~~~~~~~~~~-~~~~~vI~~~SfSK~~~pGl-RiG~~i~~~~l~~~~~~~~~~~~~~~s~~~q~~~~~~l~~~~~~~~  301 (416)
T PRK09440        224 PFPGIIFSEATP-LWNPNIILCMSLSKLGLPGV-RCGIVIADEEIIEALSNMNGIISLAPGRLGPAIAAEMIESGDLLRL  301 (416)
T ss_pred             cCCCcchhhcCc-cccCCeEEEecccccCCCcc-eEEEEeCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHhccchHHHH
Confidence            311100000000 11223   348999755799 999999999998888765444456678889888888775321111 


Q ss_pred             ----HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEecc-CCCchhHHHHHHHHHHCCeEeccCC------
Q 017259          250 ----LAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDK-TALPVSAYDICLKMKERGILAKPTH------  317 (374)
Q Consensus       250 ----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~~~~------  317 (374)
                          +.+.++++.+.+++.|++..... + .....+ .|.++|+.++. ..   +..++++.|.++||.+.|+.      
T Consensus       302 ~~~~~~~~~~~r~~~~~~~L~~~l~~~-~-~~~~~p~gg~fiw~~~~~~~~---~~~~~~~~l~~~gV~v~pg~~F~~~~  376 (416)
T PRK09440        302 SETVIRPFYRQKVQLAIALLRRYLPDE-P-CLIHKPEGAIFLWLWFKDLPI---TTEELYQRLKARGVLVVPGHYFFPGL  376 (416)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcccC-C-eEEecCCCceEEEEECCCCCC---CHHHHHHHHHHCCEEEechHhhCCCC
Confidence                22333444444555554432111 1 122233 47888888865 22   56789999999999998851      


Q ss_pred             -------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                             .+++||+++  .+++++++++++|+++++
T Consensus       377 ~~~~~~~~~~iRis~~--~~~~~l~~~i~~l~~~~~  410 (416)
T PRK09440        377 DEDWPHAHQCIRMNYV--QDDEEIEKGIAILAEEVE  410 (416)
T ss_pred             ccccCCcCceEEEEec--CCHHHHHHHHHHHHHHHH
Confidence                   148999954  478999999999999987

>cd06454 KBL_like KBL_like; this family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I)

Probab=99.94  E-value=5.7e-25  Score=204.60  Aligned_cols=305  Identities=21%  Similarity=0.221  Sum_probs=208.6

Q ss_pred             hHHHHHHHhcccc-Cc----CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLS-SR----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~-~~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+++++++..+. ++    .+..+.++++++.|+++++.+..+++++|++++..+++.+     .++|     |+|++.
T Consensus        22 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~iv~~sg~~a~~~~~~~~-----~~~g-----d~Vl~~   91 (349)
T cd06454          22 EAAKEALDKYGVGAGGSRLISGTSDLHEELEEELAEFHGKEAALVFSSGYAANDGVLSTL-----AGKG-----DLIISD   91 (349)
T ss_pred             HHHHHHHHHhCCCCCCcCeecCCchHHHHHHHHHHHHhCCCCEEEeccHHHHHHHHHHHh-----cCCC-----CEEEEe
Confidence            5777777764332 11    1457888999999999998888888899999999888776     4567     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc--CCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      ++.|..........+             ..+..++..|.+++++.+++.  ++++++++++++++++|...+    +++|
T Consensus        92 ~~~~~~~~~~~~~~g-------------~~~~~~~~~~~~~le~~i~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i  154 (349)
T cd06454          92 SLNHASIIDGIRLSG-------------AKKRIFKHNDMEDLEKLLREARRPYGKKLIVTEGVYSMDGDIAP----LPEL  154 (349)
T ss_pred             hhhhHHHHHHHHHcC-------------CceEEecCCCHHHHHHHHHHhhccCCCeEEEEeccccCCCCccC----HHHH
Confidence            888644332221111             122233334788899888854  256788999899999998887    9999


Q ss_pred             HHHHHhcCCEEEEecccc-CC-cccccCcc-cccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--CCC
Q 017259          155 RDLCSKYNILMIADEIQS-GL-ARSGRMLA-SDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GST  227 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~-~~-~~~g~~~~-~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~  227 (374)
                      .++|++||+++|+|++|+ |. ...+.... ........|++  |++|.+++   +.|+++.++++.+.+.....  ..+
T Consensus       155 ~~~~~~~~~~livD~a~~~g~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~---~gG~i~~~~~~~~~~~~~~~~~~~~  231 (349)
T cd06454         155 VDLAKKYGAILFVDEAHSVGVYGPHGRGVEEFGGLTDDVDIIMGTLGKAFGA---VGGYIAGSKELIDYLRSYARGFIFS  231 (349)
T ss_pred             HHHHHHcCCEEEEEccccccccCCCCCChhhhccccccCcEEEeechhhhcc---cCCEEECCHHHHHHHHHhchhhhcc
Confidence            999999999999999997 32 11121110 11111234544  78898873   44678888888777654322  122


Q ss_pred             CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.++..++++.++++.+.. ++..++++++.+++.+.|++....   ..  ..+.+.+.++.+++..   +..++.+.|
T Consensus       232 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~g~~---~~--~~~~~~~~~~~~~~~~---~~~~~~~~L  303 (349)
T cd06454         232 TSLPPAVAAAALAALEVLQGGPERRERLQENVRYLRRGLKELGFP---VG--GSPSHIIPPLIGDDPA---KAVAFSDAL  303 (349)
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhcCCc---cc--CCCCCcEEEEeCCChH---HHHHHHHHH
Confidence            35677778888888887654 456777777888888877665211   11  1112333333333222   578899999


Q ss_pred             HHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          307 KERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       307 ~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .++||.+.+.       ..+++|++++...+++++++++++|+++
T Consensus       304 ~~~gI~~~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~  348 (349)
T cd06454         304 LERGIYVQAIRYPTVPRGTARLRISLSAAHTKEDIDRLLEALKEV  348 (349)
T ss_pred             HhCCceEEEecCCccCCCCCeEEEEEeCCCCHHHHHHHHHHHHHh
Confidence            9999999752       1478999998889999999999999764

The major groups in this CD corresponds to serine palmitoyltransferase (SPT), 5-aminolevulinate synthase (ALAS), 8-amino-7-oxononanoate synthase (AONS), and 2-amino-3-ketobutyrate CoA ligase (KBL). SPT is responsible for the condensation of L-serine with palmitoyl-CoA to produce 3-ketodihydrospingosine, the reaction of the first step in sphingolipid biosynthesis. ALAS is involved in heme biosynthesis; it catalyzes the synthesis of 5-aminolevulinic acid from glycine and succinyl-coenzyme A. AONS catalyses the decarboxylative condensation of l-alanine and pimeloyl-CoA in the first committed step of biotin biosynthesis. KBL catalyzes the second reaction step of the metabolic degradation pathway for threonine converting 2-amino-3-ketobutyrate, to glycine and acetyl-CoA. The members of this CD are widely found in all three forms of life.

>PLN02607 1-aminocyclopropane-1-carboxylate synthase

Probab=99.94  E-value=4e-25  Score=210.33  Aligned_cols=298  Identities=16%  Similarity=0.143  Sum_probs=192.7

Q ss_pred             CCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++++.+++.+.+.+      ..+++++|+|+++|++.++..+     ..+|     |.|++..|.|.++........+.
T Consensus        98 ~~LR~aiA~~l~~~~~~~~~v~p~~Ivit~G~t~al~~l~~~l-----~~pG-----D~Vlv~~P~Y~~f~~~~~~~~g~  167 (447)
T PLN02607         98 KSFRQAMASFMEQIRGGKARFDPDRIVLTAGATAANELLTFIL-----ADPG-----DALLVPTPYYPGFDRDLRWRTGV  167 (447)
T ss_pred             HHHHHHHHHHHHHhcCCCCCcCHHHeEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCCcchHHHHHhcCCc
Confidence            445556666666543      3458999999999999988877     5677     99999999998775443321221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ........   .... .. .|++++++++++   .+.+++++++.+++||+|.+. +++.+++|.++|++||+.||+||+
T Consensus       168 ~vv~v~~~---~~~~-f~-~~~~~le~a~~~a~~~~~~vk~lll~nP~NPtG~~~-s~e~l~~l~~~~~~~~i~lI~DEi  241 (447)
T PLN02607        168 KIVPIHCD---SSNN-FQ-VTPQALEAAYQEAEAANIRVRGVLITNPSNPLGATV-QRSVLEDILDFVVRKNIHLVSDEI  241 (447)
T ss_pred             EEEEEeCC---CCCC-Cc-CCHHHHHHHHHHHHHhCCCeeEEEEeCCCCCcCccc-CHHHHHHHHHHHHHCCCEEEEecc
Confidence            11110000   0000 00 278899888874   235789999988999999877 899999999999999999999999


Q ss_pred             ccCCcccccCcc-c-cc---CC-CC-Cc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCC-CCCHHHHH
Q 017259          171 QSGLARSGRMLA-S-DW---EE-VR-PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTF-GGNPLASA  236 (374)
Q Consensus       171 ~~~~~~~g~~~~-~-~~---~~-~~-~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~~  236 (374)
                      |.+..+.+..+. . ..   .+ .. ++    +.+|||.++ +|+ |+||+++ ++++...++..   ..+ ..+.+++.
T Consensus       242 Ya~~~f~~~~f~S~~s~~~~~~~~~~~~~v~vi~s~SK~fg~~Gl-RvG~ivs~n~~l~~~~~~~---~~~~~~s~~~q~  317 (447)
T PLN02607        242 YSGSVFSASEFVSVAEIVEARGYKGVAERVHIVYSLSKDLGLPGF-RVGTIYSYNDKVVTTARRM---SSFTLVSSQTQH  317 (447)
T ss_pred             ccccccCCCCcccHHHHHhhcCCCCCcCcEEEEEcchhcCCCCcc-eEEEEEEcCHHHHHHHHHH---hhcCCCCHHHHH
Confidence            987433332221 1 10   11 01 22    238999998 799 9999887 66776666532   122 34666776


Q ss_pred             HHHHHHHHHhhhcHH--------HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---chhHHHHHHH
Q 017259          237 VAIASLDVIRDEKLA--------ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLK  305 (374)
Q Consensus       237 aa~~al~~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~  305 (374)
                      ++...++   +.++.        ++++++.+.+.+.|++.     ++.......|.|+|++++....   .....++.++
T Consensus       318 ~~~~~L~---d~~~~~~~l~~~r~~l~~~~~~~~~~L~~~-----gi~~~~~~ag~fvw~~L~~~~~~~~~~~e~~l~~~  389 (447)
T PLN02607        318 LLASMLS---DEEFTENYIRTNRERLRKRYEMIVQGLRRA-----GIECLKGNAGLFCWMNLSPLLETPTREGELALWDS  389 (447)
T ss_pred             HHHHHhC---CchhHHHHHHHHHHHHHHHHHHHHHHHHhC-----CCCcccCCeeEEEEEEchHhhcCCCchhHHHHHHH
Confidence            6665554   32222        22233333333333332     2322223458899998864210   0124578878


Q ss_pred             HHH-CCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKE-RGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~-~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++ .||.+.|+.      ++|+||+++. .+++++++++++|.++++
T Consensus       390 ll~~~gV~v~pG~~f~~~~~g~fRi~fa~-~~~~~l~~gl~Ri~~~l~  436 (447)
T PLN02607        390 ILREVKLNISPGSSCHCSEPGWFRVCFAN-MSEDTLEVALKRIHRFMD  436 (447)
T ss_pred             HHHhCCEEEcCccccCCCCCCEEEEEecc-CCHHHHHHHHHHHHHHHH
Confidence            775 699998863      6899999442 378999999999999987

>PRK04870 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=3.8e-25  Score=206.17  Aligned_cols=286  Identities=17%  Similarity=0.141  Sum_probs=192.9

Q ss_pred             CCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           18 FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      |+.+...++++.++++++.   +++++|+|+++++..++.++     ..+|     |+|++.+|+|.++...+...+...
T Consensus        60 Y~~~~~~~lr~~ia~~~~~~~~~~I~~t~G~~~~i~~~~~~~-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~~~  129 (356)
T PRK04870         60 YPDPRAAALKAALRAAMGVPAGADVLLGNGSDELIQLLALAC-----AKPG-----ATVLAPEPGFVMYRMSAKLAGLEF  129 (356)
T ss_pred             CCCCCHHHHHHHHHHHhCcCCCCcEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEECCCCHHHHHHHHHHcCCEE
Confidence            4445567888889988764   37999999999999988877     5667     999999999977654443333221


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    .+...+.    ..|++++++++..  .+++++++++++||+|.+. +.+.+++|+++|   ++++|+||+|.+|
T Consensus       130 ~~----i~~~~~~----~~d~~~l~~~~~~--~~~~~v~l~~p~NPtG~~~-~~~~~~~i~~~~---~~~ii~De~y~~~  195 (356)
T PRK04870        130 VG----VPLTADF----TLDLPAMLAAIAE--HRPALVFLAYPNNPTGNLF-DDADVERIIEAA---PGLVVVDEAYQPF  195 (356)
T ss_pred             EE----ecCCCCC----CCCHHHHHHHhhc--CCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHC---CCEEEEECCchhh
Confidence            11    1111110    1278999988864  3678888888899999888 677777777777   7899999999877


Q ss_pred             cccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHHH
Q 017259          175 ARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAE  252 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~~  252 (374)
                      ............+...-+.|||| ++ +|+ |+||+++++++++.+....  ..++.+.+++.++..+++.... ++..+
T Consensus       196 ~~~~~~~~~~~~~~vi~~~S~SK-~~~~Gl-RiG~~i~~~~~i~~~~~~~--~~~~~~~~~q~~a~~~l~~~~~~~~~~~  271 (356)
T PRK04870        196 AGDSWLPRLARFPNLLVMRTVSK-LGLAGL-RLGYLAGHPAWIAELDKVR--PPYNVNVLTQATALFALEHVDVLDAQAA  271 (356)
T ss_pred             cCcchHHHHhhCCCEEEEecchh-hhhHHH-hhhhhhCCHHHHHHHHHcc--CCCcCCHHHHHHHHHHHhCHHHHHHHHH
Confidence            43211101111111112338999 66 699 9999999999888887532  3456778888877777653211 12344


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEecC
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPP  326 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~  326 (374)
                      +++++++++.+.|+.    ++++ ...+..+.++|+.++      +..++.+.|.++||.++++.      .+++||++ 
T Consensus       272 ~~~~~~~~l~~~L~~----~~~~-~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~v~~~~~f~~~~~~~iRis~-  339 (356)
T PRK04870        272 QLRAERTRLAAALAA----LPGV-TVFPSAANFILVRVP------DAAAVFDGLKTRGVLVKNLSGMHPLLANCLRVTV-  339 (356)
T ss_pred             HHHHHHHHHHHHHHh----CCCc-EECCCCCeEEEEECC------CHHHHHHHHHHCCEEEEECCCCCCCCCCeEEEeC-
Confidence            455555555555543    3332 223455778888765      24678999999999998752      57999993 


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDVL  345 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~  345 (374)
                        .+.+++++++++|++++
T Consensus       340 --~~~~~~~~l~~al~~~~  356 (356)
T PRK04870        340 --GTPEENAQFLAALKAAL  356 (356)
T ss_pred             --CCHHHHHHHHHHHHHhC
Confidence              37889999999998753

>PRK04781 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4.8e-25  Score=205.63  Aligned_cols=293  Identities=14%  Similarity=0.152  Sum_probs=195.4

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++|+|+++++..++.++.     .+|    +++|++.+|+|..+...+...+....
T Consensus        56 Y~~~~~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~~-----~~g----~~~vlv~~p~y~~~~~~~~~~g~~~~  126 (364)
T PRK04781         56 YPDPQPPGLRSALAALYGCAPEQLLIGRGSDEAIDLLVRALC-----VPG----RDAVLVTPPVFGMYAVCARLQNAPLV  126 (364)
T ss_pred             CCCCCHHHHHHHHHHHhCcChHHEEEeCCHHHHHHHHHHHhc-----CCC----CCeEEEcCCChHHHHHHHHHcCCEEE
Confidence            5555577899999998754  589999999999999998773     333    26899999987544333222221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    .+...+..... .|++++.+.+..  ++++++++++++||+|.+. +.+.+++|.+.|+ ++++||+||+|.+|.
T Consensus       127 ~----v~~~~~~~~~~-~d~~~l~~~~~~--~~~~lv~l~~p~NPTG~~~-~~~~~~~l~~~~~-~~~~iI~Deay~~f~  197 (364)
T PRK04781        127 E----VPLVDGADGFH-ADVPAIVAAALA--SNAKLVFLCSPSNPAGSAI-ALDQIERALQALQ-GKALVVVDEAYGEFS  197 (364)
T ss_pred             E----EecCCCccCCC-cCHHHHHHHHhc--cCCeEEEEcCCCCCCCCCc-CHHHHHHHHHhCC-CCcEEEEeCcchhhc
Confidence            0    01100000000 156776554432  4688888888999999888 6777788877775 489999999999875


Q ss_pred             ccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---
Q 017259          176 RSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---  248 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---  248 (374)
                      .....  ....+..++++   ||||.++ +|+ |+||+++++++++.+...  ...++.+.+++.++..+++....+   
T Consensus       198 ~~~~~--~~~~~~~~~vi~~~SfSK~~gl~Gl-RvGy~v~~~~l~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~  272 (364)
T PRK04781        198 DVPSA--VGLLARYDNLAVLRTLSKAHALAAA-RIGSLIANAELIAVLRRC--QAPYPVPTPCAALAEQALSAPALAVTA  272 (364)
T ss_pred             CCcch--HHHHhhCCCEEEEecChhhcccccc-eeeeeeCCHHHHHHHHhc--cCCCCCCHHHHHHHHHHHhcccHHHHH
Confidence            32111  11122234443   8999999 899 999999999999888754  235677888888877777532111   


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEEE
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRL  323 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi  323 (374)
                      +..+.++++++++.+.|+.    ++++....++.|+|+|+.++      +..++.+.|.++||.++++.     .+++||
T Consensus       273 ~~~~~~~~~r~~l~~~L~~----~~~~~~~~p~~g~f~~~~~~------~~~~~~~~l~~~gI~v~~~~~~~~~~~~~Ri  342 (364)
T PRK04781        273 RRVAEVRAERERLHAALAQ----LPGVRRVYPSQGNFLLVRFD------DAEAAFQALLAAGVVVRDQRAAPRLSDALRI  342 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHh----CCCCCeECCCCCcEEEEEcC------CHHHHHHHHHHCCeEEeeCCCCCCCCCeEEE
Confidence            2233344445555555543    33332234566899998775      35689999999999998863     579999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 017259          324 TPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +   ..++++.++++++|+++..
T Consensus       343 s---~~~~~~~~~l~~al~~~~~  362 (364)
T PRK04781        343 T---LGTPEQNDRVLAALQRTQA  362 (364)
T ss_pred             e---CCCHHHHHHHHHHHHHHHh
Confidence            9   4478899999999987653

>PRK07590 L,L-diaminopimelate aminotransferase; Validated

Probab=99.94  E-value=3.7e-25  Score=209.82  Aligned_cols=283  Identities=13%  Similarity=0.090  Sum_probs=179.4

Q ss_pred             CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC
Q 017259           35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD  114 (374)
Q Consensus        35 ~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  114 (374)
                      ..+++++|+|+++++...+. +     ..+|     |+|++.+|+|.++...+...+...... ... ...++..++.+.
T Consensus        98 ~~~~I~it~Ga~~al~~l~~-~-----~~~g-----d~V~v~~P~Y~~~~~~~~~~g~~~~~~-~~~-~~~~~~~v~~~~  164 (409)
T PRK07590         98 SADEIFISDGAKCDTGNILD-I-----FGPD-----NTIAVTDPVYPVYVDTNVMAGRTGEAN-EDG-RYSGIVYLPCTA  164 (409)
T ss_pred             ChhhEEECCCHHHHHHHHHH-h-----cCCC-----CEEEEeCCCCcchHHHHHHcCCccccc-ccc-cccceeEeeccc
Confidence            45689999999999887432 2     3467     999999999988766555444321000 000 000122222210


Q ss_pred             HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC-cccccC-CCCCc-
Q 017259          115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE-EVRPD-  191 (374)
Q Consensus       115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~-~~~~d-  191 (374)
                      -+.+..-+.+  ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.++.+.+.. ...... +.... 
T Consensus       165 ~~~~~~d~~~--~~~k~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~Y~~~~~~~~~~~~~~~~~~~~~~v  241 (409)
T PRK07590        165 ENNFVPELPE--EKVDIIYLCFPNNPTGTVL-TKEQLKAWVDYAKENGSLILFDAAYEAFISDPSLPHSIYEIEGARECA  241 (409)
T ss_pred             ccCCcccCcc--cCceEEEEeCCCCCcCCcC-CHHHHHHHHHHHHHcCeEEEEEccchhhccCCCCCcchhhCCCcccce
Confidence            0001000111  4688888888889999877 8999999999999999999999999987544321 111111 11112 


Q ss_pred             --EEEeccccc-CCccchhhheeCHHHHhhcCC-----------CCCCCCC-CCCHHHHHHHHHHHHHHhh---hcHHHH
Q 017259          192 --MVILGKALG-GGVIPVSAVLADKEVMLCIQP-----------GEHGSTF-GGNPLASAVAIASLDVIRD---EKLAER  253 (374)
Q Consensus       192 --~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~-----------~~~~~~~-~~~~~~~~aa~~al~~~~~---~~~~~~  253 (374)
                        +-||||.++ +|+ |+||+++++++++.+..           ......+ +.+.+++.++.++++.-..   +++.+.
T Consensus       242 i~~~SfSK~~~~pGl-RiG~~i~~~~li~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~q~a~~~~l~~~~~~~~~~~~~~  320 (409)
T PRK07590        242 IEFRSFSKTAGFTGT-RCAYTVVPKELKGKTSDGEGVSLNSLWNRRQSTKFNGVSYIVQRAAEAVYSPEGKAQIKELIDY  320 (409)
T ss_pred             EEEecCccccCCcCc-eeEEEEcCHHHhhhccccchhhhHHHHHHHHhhcccCcCHHHHHHHHHHhcCCcHHHHHHHHHH
Confidence              338999998 899 99999999888763210           0112222 4677888887776642111   123445


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC------CCEEEEecC
Q 017259          254 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRLTPP  326 (374)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~lRi~~~  326 (374)
                      ++++++++.+.|+..     ++.......+.++|+.+++..   +..++++.|++ .||.+.|+.      .+++||+  
T Consensus       321 ~~~~r~~l~~~L~~~-----~~~~~~~~g~~f~wi~~~~~~---~~~~~~~~l~~~~gv~v~pg~~f~~~~~~~iRi~--  390 (409)
T PRK07590        321 YMENAKIIREGLESA-----GFEVYGGVNAPYIWVKTPDGM---SSWDFFDKLLQEANVVGTPGSGFGPSGEGYFRLS--  390 (409)
T ss_pred             HHHHHHHHHHHHHhc-----CCceecCCcceEEEEECCCCC---CHHHHHHHHHHHCCEEEeChhHhCCCCCCEEEEE--
Confidence            555555555555543     221111235778898887643   56788888875 699998862      4799999  


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDV  344 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~  344 (374)
                      +..+++++++++++|+++
T Consensus       391 ~~~~~~~l~~~l~rl~~~  408 (409)
T PRK07590        391 AFGSRENVLEAMERIKKA  408 (409)
T ss_pred             ccCCHHHHHHHHHHHHhh
Confidence            456889999999999875

>PRK05166 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=6.4e-25  Score=205.61  Aligned_cols=289  Identities=20%  Similarity=0.184  Sum_probs=193.1

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.....++++.++++++.  +++++|+|+++++..++.++     .++|     |+|++..|+|......+...+....
T Consensus        68 Y~~~~g~~lr~~ia~~~~~~~~~i~~t~G~~~~l~~~~~~~-----~~~g-----d~vli~~P~y~~~~~~~~~~g~~~~  137 (371)
T PRK05166         68 YPDPQGRALREAIAARTGVPADRIILGNGSEDLIAVICRAV-----LRPG-----DRVVTLYPSFPLHEDYPTMMGARVE  137 (371)
T ss_pred             CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCChHHHHHHHHHcCCeEE
Confidence            3344445788888887754  58999999999999888877     5667     9999999999765443332221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    .+...+.    .-|++++++.++   ++++++++.+++|++|.+. +.+.+++|+++|++ +++||+||+|.++.
T Consensus       138 ~----v~~~~~~----~~~~~~l~~~~~---~~~~~v~l~~p~NPtG~~~-~~~~~~~l~~~~~~-~~~ii~De~y~~~~  204 (371)
T PRK05166        138 R----VTVTPDL----GFDLDALCAAVA---RAPRMLMFSNPSNPVGSWL-TADQLARVLDATPP-ETLIVVDEAYAEYA  204 (371)
T ss_pred             E----eecCCCC----CCCHHHHHHhhh---cCCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCCC-CcEEEEECcHHHhc
Confidence            0    0110100    016888988886   3567888888899999888 78888888888864 89999999999775


Q ss_pred             ccccCcc-cccC-CCCCcE---EEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-h
Q 017259          176 RSGRMLA-SDWE-EVRPDM---VILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-D  247 (374)
Q Consensus       176 ~~g~~~~-~~~~-~~~~d~---~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~  247 (374)
                      ..+.... .... ...+++   .||||.++ +|+ |+||++. ++++.+.+...  ...++.+.+++.++.+++..-. -
T Consensus       205 ~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~l~Gl-RiG~~i~~~~~l~~~~~~~--~~~~~~~~~~q~~~~~~l~~~~~~  281 (371)
T PRK05166        205 AGDDYPSALTLLKARGLPWIVLRTFSKAYGLAGL-RVGYGLVSDPELVGLLDRV--RTPFNVNGAAQAAALAALDDEEHL  281 (371)
T ss_pred             CCcCcccHHHHHhhcCCCEEEEeechHhhhcchh-heeeeecCCHHHHHHHHHh--ccCCCCCHHHHHHHHHHhcCHHHH
Confidence            3222111 1111 122233   38999999 899 9999765 67777777542  2345678888877777765210 0


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRL  323 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi  323 (374)
                      ++..+.++++++++.+.|+..     ++. ..++.|.|+|+.++.     +..++++.|.++||.+.++.    .+++||
T Consensus       282 ~~~~~~~~~~r~~l~~~L~~~-----g~~-~~p~~g~fl~~~~~~-----~~~~l~~~l~~~gi~v~p~~~~~~~~~iRi  350 (371)
T PRK05166        282 AKGVALALAERERLKKELAEM-----GYR-IAPSRANFLFFDARR-----PASAVAEALLRQGVIVKPWKQPGFETFIRV  350 (371)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----cCe-eCCCcCCEEEEeCCC-----CHHHHHHHHHHCCeEEecCCCCCCCCeEEE
Confidence            123344444555555555543     222 134457888877543     46789999999999998863    689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 017259          324 TPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++   .+.++.+++.++|+.++.
T Consensus       351 ~~---~~~~~~~~l~~~l~~i~~  370 (371)
T PRK05166        351 SI---GSPEENDHFVAALDKVLE  370 (371)
T ss_pred             Ec---CCHHHHHHHHHHHHHHhh
Confidence            93   367778888888887653

>PLN02721 threonine aldolase

Probab=99.94  E-value=1.9e-24  Score=201.36  Aligned_cols=302  Identities=15%  Similarity=0.133  Sum_probs=191.0

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHccccc-ccCCCCccEEEEeccCCCCcccc--cccccCC
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK-KKFSIDEAIIVSCCGCFHGRTLA--AISMSCD   93 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~-~G~~~~~~~vi~~~~~yhg~~~~--~~~~~~~   93 (374)
                      .++++...++++.++++++.+.+++++||++++..++.++     .. +|     |+|++.+++|......  .....+ 
T Consensus        36 ~~~~~~~~~l~~~la~~~~~~~~~~~~~Gs~a~~~~l~~~-----~~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g-  104 (353)
T PLN02721         36 LGYDPTALRLEEEMAKIFGKEAALFVPSGTMGNLISVLVH-----CDVRG-----SEVILGDNSHIHLYENGGISTLGG-  104 (353)
T ss_pred             cCCCHHHHHHHHHHHHHhCCceeEEecCccHHHHHHHHHH-----ccCCC-----CeEEEcCccceehhcccchhhhcC-
Confidence            3557778899999999999998999999999988887776     33 67     9999999987433221  111111 


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcC----CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESG----DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                        ....+.+...+.    ..|+++++++++++.    +++++++++++++++|+...+.+.+++|.++|++||++||+||
T Consensus       105 --~~~~~v~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~~v~l~~~~~np~G~~~~~~~l~~l~~l~~~~g~~livD~  178 (353)
T PLN02721        105 --VHPRTVKNNEDG----TMDLDAIEAAIRPKGDDHFPTTRLICLENTHANCGGRCLSVEYTDKVGELAKRHGLKLHIDG  178 (353)
T ss_pred             --ceeEecCCCcCC----CcCHHHHHHHHHhccCCCCCcceEEEEeccccccCCccccHHHHHHHHHHHHHcCCEEEEEc
Confidence              100001110000    027999999987421    4788999988766655555589999999999999999999999


Q ss_pred             cccCCcccc-cCcccccCCCCCc--EEEecccccCCccchhh-heeCHHHHhhcCCCCCCCCCCCCHH--HHHHHHHHHH
Q 017259          170 IQSGLARSG-RMLASDWEEVRPD--MVILGKALGGGVIPVSA-VLADKEVMLCIQPGEHGSTFGGNPL--ASAVAIASLD  243 (374)
Q Consensus       170 a~~~~~~~g-~~~~~~~~~~~~d--~~s~sK~~~~G~~~~G~-~~~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~~al~  243 (374)
                      +|. ++... ............|  +.++||++++   ++|+ ++.++++++.+...........+..  ..+++..+++
T Consensus       179 a~~-~~~~~~~~~~~~~~~~~~d~~~~s~sK~l~~---~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  254 (353)
T PLN02721        179 ARI-FNASVALGVPVHRLVKAADSVSVCLSKGLGA---PVGSVIVGSKSFIRKAKRLRKTLGGGMRQVGVLAAAALVALQ  254 (353)
T ss_pred             hhh-hcchhhhCCCHHHHhhhCCEEEEecccccCC---ceeeEEecCHHHHHhHHHHHHhcCCCeehhHHHHHHHHHHHH
Confidence            986 21100 0001111111233  4478899873   3454 5677887776543211111111112  2223333343


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEE
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVR  322 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR  322 (374)
                      ...  +..++..++.+++.+.|+++    +++.. ...+.+.++++.++.. .+.+..+++++|.++||.+++...+++|
T Consensus       255 ~~~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~L~~~gi~v~~~~~~~lR  327 (353)
T PLN02721        255 ENV--PKLEDDHKKAKLLAEGLNQI----KGLRVNVAAVETNIVYFDITDG-SRITAEKLCKSLEEHGVLLMPGNSSRIR  327 (353)
T ss_pred             HHH--HHHHHHHHHHHHHHHHHHhC----CCcEEecCCccceEEEEEccCC-ccccHHHHHHHHHhCCcEEecCCCceEE
Confidence            221  12333345556666666554    22211 1233456788777642 0015788999999999999999889999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++++..+++|+++++++|++++.
T Consensus       328 ~~~~~~~~~~~i~~~~~~l~~~~~  351 (353)
T PLN02721        328 VVTHHQISDSDVQYTLSCFQQAAL  351 (353)
T ss_pred             EEecCcCCHHHHHHHHHHHHHHhh
Confidence            999888999999999999998876

>PLN02231 alanine transaminase

Probab=99.94  E-value=9.4e-25  Score=211.24  Aligned_cols=304  Identities=11%  Similarity=0.073  Sum_probs=193.8

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+..    ..++|++|+|+++|+..+++++.    ..+|     |.|+++.|+|..+.......+..
T Consensus       169 G~~~lReaIA~~~~~r~g~~~~pe~I~iT~Ga~~ai~~~~~~l~----~~~g-----d~Vli~~P~Y~~y~~~~~~~g~~  239 (534)
T PLN02231        169 GIKGLRDAIAAGIEARDGFPADPNDIFLTDGASPAVHMMMQLLI----RSEK-----DGILCPIPQYPLYSASIALHGGT  239 (534)
T ss_pred             CcHHHHHHHHHHHHhccCCCCCcccEEEeCCHHHHHHHHHHHhc----cCCC-----CEEEEeCCCChhHHHHHHHcCCE
Confidence            33444555666665543    35789999999999999999884    2356     99999999998876655544433


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ....    ++..+.. . -.|+++|++++++..   .+++++++.+++||||.+. +++.+++|.++|++||++||+||+
T Consensus       240 ~v~~----~l~~~~~-~-~~d~~~Le~~l~~~~~~~~~~k~ivl~nP~NPTG~vl-s~e~l~~Iv~~a~~~~l~lI~DEv  312 (534)
T PLN02231        240 LVPY----YLDEATG-W-GLEISELKKQLEDARSKGITVRALVVINPGNPTGQVL-AEENQRDIVEFCKQEGLVLLADEV  312 (534)
T ss_pred             EEEE----ecCcccC-C-CCCHHHHHHHHHHHhhcCCCeEEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEcc
Confidence            2111    1111000 0 027899999887521   2688888888899999877 899999999999999999999999


Q ss_pred             ccCCccc-ccCc-ccccC----CC---CCcEE---Eeccccc--CCccchhhhee---CHHHHhhcCCCCCCCCCCCCHH
Q 017259          171 QSGLARS-GRML-ASDWE----EV---RPDMV---ILGKALG--GGVIPVSAVLA---DKEVMLCIQPGEHGSTFGGNPL  233 (374)
Q Consensus       171 ~~~~~~~-g~~~-~~~~~----~~---~~d~~---s~sK~~~--~G~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~~  233 (374)
                      |.++.+. +..+ .+...    +.   ...++   ||||.+.  .|+ |+||+++   ++++.+.+..... .+.+.+.+
T Consensus       313 Y~~l~y~~~~~~~s~~~~~~~~g~~~~~~~vi~l~S~SK~~~g~pGl-RiGy~~~~~~~~~l~~~l~k~~~-~~~~s~~~  390 (534)
T PLN02231        313 YQENVYVPDKKFHSFKKVARSMGYGEKDISLVSFQSVSKGYYGECGK-RGGYMEVTGFTSDVREQIYKVAS-VNLCSNIS  390 (534)
T ss_pred             chhcccCCCCCcccHHHHHhhhccccCCceEEEEeccCcccccCCcc-ceEEEEEecCCHHHHHHHHHHHh-hhcCCChH
Confidence            9987553 2222 21110    11   12233   8899874  599 9999875   6778777754322 34455677


Q ss_pred             HHHHHHHHHHH-------Hh-----hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEe--ccCCC---
Q 017259          234 ASAVAIASLDV-------IR-----DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEF--DKTAL---  295 (374)
Q Consensus       234 ~~~aa~~al~~-------~~-----~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~--~~~~~---  295 (374)
                      ++.++..+++.       ..     .+++.+.++++.+.+.+.|+++    ++ +....+. +.|+|..+  +....   
T Consensus       391 ~Q~~~~~~l~~p~~~~~~y~~~~~~~~~i~~~~~~r~~~l~~~L~~~----~g-i~~~~p~Ggfylw~~l~lp~~~~~~~  465 (534)
T PLN02231        391 GQILASLVMSPPKPGDESYESYMAEKDGILSSLARRAKTLEDALNSL----EG-VTCNKAEGAMYLFPRIHLPQKAIKAA  465 (534)
T ss_pred             HHHHHHHHhCCCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CC-ceecCCCeeeEEeccccCcHHHHHHH
Confidence            77777666631       10     0122344555555555555433    22 2233344 44445233  22100   


Q ss_pred             ----chhHHHHHHHHH-HCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 ----PVSAYDICLKMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ----~~~~~~~~~~l~-~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                          ......++..|+ +.||.+.|+.       ..++|++  +..+++++++++++|+++++
T Consensus       466 ~~~~~~~d~~~~~~Ll~~~GV~vvPGs~Fg~~~g~~~~Rit--~~~~~e~l~eal~RL~~~~~  526 (534)
T PLN02231        466 EAAKTAPDAFYCKRLLNATGIVVVPGSGFGQVPGTWHFRCT--ILPQEDKIPAIVSRLTEFHK  526 (534)
T ss_pred             hhcCCCcHHHHHHHHHHhcCEEEeCCcccCCCCCCCeEEEE--eCCCHHHHHHHHHHHHHHHH
Confidence                001234567676 5699999863       2469999  45788999999999998887

>PRK09275 aspartate aminotransferase; Provisional

Probab=99.94  E-value=4.6e-25  Score=210.65  Aligned_cols=310  Identities=13%  Similarity=0.138  Sum_probs=189.4

Q ss_pred             cCCCCCcHHHHHHHHhc-c-cC------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc
Q 017259           16 RAFYNDKFPVFAERLTS-M-FG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA   87 (374)
Q Consensus        16 ~~~~~~~~~~l~~~l~~-~-~~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~   87 (374)
                      +.+..++++.+++++.+ . .+      .+++++|+|+++|+..++.++......++|     |+|++.+|+|..+...+
T Consensus       133 ~~g~~~lreaia~~~~~~~~~~~~~~~~~~~I~vT~Ga~~al~~~~~aL~~~~ll~pG-----D~Vlv~~P~y~~Y~~~~  207 (527)
T PRK09275        133 PDRMLKHTEKIVKDYLRQEMCGGRPPKGEFDLFAVEGGTAAMCYIFDSLKENGLLKAG-----DKIALMTPIFTPYLEIP  207 (527)
T ss_pred             CCCCHHHHHHHHHHHHHhhccCCCCCCCcCeEEEeCCHHHHHHHHHHHHhhhhcCCCC-----CEEEEeCCChHHHHHHH
Confidence            33445556666654432 1 11      238999999999999999875332336788     99999999998775544


Q ss_pred             ccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh--cCCEE
Q 017259           88 ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILM  165 (374)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~--~~i~l  165 (374)
                      ........... . +...+.. .. .|+++++++++   ++++++++++++||+|.+. +++.+++|+++|++  +|++|
T Consensus       208 ~l~g~~~~~v~-v-~~~~~~~-f~-~d~~~l~~~~~---~~tkai~l~nP~NPTG~v~-s~e~l~~I~~ia~~~~~~l~I  279 (527)
T PRK09275        208 ELPRYDLEVVH-I-NADEENE-WQ-YPDSELEKLRD---PSIKALFLVNPSNPPSVAM-SDESLEKIADIVNEKRPDLMI  279 (527)
T ss_pred             HHcCCCeEEEE-e-ecCcccC-CC-CCHHHHHhhcC---CCCCEEEEeCCcCCcCCCC-CHHHHHHHHHHHHhcCCCcEE
Confidence            33322111110 0 0000000 00 26788888765   6899999989999999877 89999999999964  59999


Q ss_pred             EEeccccCCcccccCcccccC-CCCCcEEEeccccc-CCccchhhheeCHH-----HHhhc-------------------
Q 017259          166 IADEIQSGLARSGRMLASDWE-EVRPDMVILGKALG-GGVIPVSAVLADKE-----VMLCI-------------------  219 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~~~~-~~~~d~~s~sK~~~-~G~~~~G~~~~~~~-----~~~~~-------------------  219 (374)
                      |+||+|..|...... ..... .....+.||||.++ +|| |+||++++++     +++.+                   
T Consensus       280 I~DEvY~~f~~~~~s-~~~~~~~~~I~v~SfSK~f~mtG~-RlG~i~~~~~~v~~~~i~~l~~~~~~~~~~ry~~~~~~p  357 (527)
T PRK09275        280 ITDDVYGTFVDDFRS-LFAVLPYNTILVYSFSKYFGATGW-RLGVIALHEDNVFDKLIAKLPEEKKKELDKRYSSLTTDP  357 (527)
T ss_pred             EECCCChhhcccccC-HHHhCCCCEEEEeehhhhccCcHh-HHhhhhcCchhHHHHHHHhccHHHHHHHHhhhhhccCCc
Confidence            999999977431111 11111 11112339999998 799 9999998875     43333                   


Q ss_pred             -------------CCCCCCCCCCCCHHHHHH-H----HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE
Q 017259          220 -------------QPGEHGSTFGGNPLASAV-A----IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG  281 (374)
Q Consensus       220 -------------~~~~~~~~~~~~~~~~~a-a----~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  281 (374)
                                   +.....++.+.+.+.|.+ +    .++++.  .+++.+..++..++.++.+-+....  +.....+.
T Consensus       358 ~~~~fidrlvad~~~v~~~~t~~~s~p~Q~a~al~~~~all~~--~~~~~~~~~~~~~~Rr~~l~~~Lg~--~~~~~~p~  433 (527)
T PRK09275        358 EKLKFIDRLVADSRQVALNHTAGLSTPQQVQMALFSLFALLDE--EDAYKKAMKDIIRRRYKALYEGLGL--PEPEDPNN  433 (527)
T ss_pred             chhhhHHHHHHHHHHHHHhhccCCCCHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHHHcCC--CCcCCCCC
Confidence                         122344566777777775 3    222321  1233333333333333333222111  12111233


Q ss_pred             EeeeEEEEeccCCC-------------chhHHHHHHHHHHC-CeEeccCC-----CCEEEEecCCC-CCHHHHHHHHHHH
Q 017259          282 RGLFNAVEFDKTAL-------------PVSAYDICLKMKER-GILAKPTH-----DTIVRLTPPLS-ISSNELQEGSKAL  341 (374)
Q Consensus       282 ~g~~~~~~~~~~~~-------------~~~~~~~~~~l~~~-Gi~v~~~~-----~~~lRi~~~~~-~~~e~i~~~~~~l  341 (374)
                      .+.|++++++....             ..+..+++.+|+++ ||++.|+.     .+++||+  ++ .+++++.++.++|
T Consensus       434 g~fY~~~di~~~~~~~~g~~f~~~l~~~~~~~~f~~~Ll~e~gV~v~PG~~Fg~~~~~vRis--~a~~~~~~~~~~~~rl  511 (527)
T PRK09275        434 AAYYTLIDLEEWAEKNYGKEFADYLKKNYSPVDLLFRLAEETGVVLLPGGGFGGPEWSVRVS--LANLNEEDYAKIGKAI  511 (527)
T ss_pred             eeEEEEEEhHHhhhhccCchhhhhhhccCCHHHHHHHHHhcCCEEEeCchhhCCCCCeEEEE--EecCCHHHHHHHHHHH
Confidence            45666666643110             11467788888755 99998863     4689999  45 5789999999999


Q ss_pred             HHHHh
Q 017259          342 HDVLE  346 (374)
Q Consensus       342 ~~~~~  346 (374)
                      +++++
T Consensus       512 ~~~l~  516 (527)
T PRK09275        512 RKLLD  516 (527)
T ss_pred             HHHHH
Confidence            99987

>PRK06959 putative threonine-phosphate decarboxylase; Provisional

Probab=99.94  E-value=6.3e-25  Score=202.70  Aligned_cols=275  Identities=17%  Similarity=0.168  Sum_probs=189.3

Q ss_pred             CCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           18 FYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      |+.+. .+|.+.+++++|.   +++++|+|+++++..... +     ..+|     + |++..|+|.++...+...+.  
T Consensus        51 Yp~~~-~~L~~~ia~~~~~~~~~~I~i~~Gs~e~i~~l~~-~-----~~~g-----~-v~v~~P~y~~y~~~~~~~g~--  115 (339)
T PRK06959         51 LPEDD-DGLAACAARYYGAPDAAHVLPVAGSQAAIRALPA-L-----LPRG-----R-VGIAPLAYSEYAPAFARHGH--  115 (339)
T ss_pred             CCCch-HHHHHHHHHHhCCCCcccEEECcCHHHHHHHHHH-h-----cCCC-----e-EEEcCCCcHHHHHHHHHCCC--
Confidence            55544 7899999998855   589999999999875543 2     2334     5 88899999877655544332  


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                                 .+..++.++ +    .+.   +.++.+++.+++||||.+. +++.+++|++.|+++++++|+||+|.+|
T Consensus       116 -----------~~~~v~~~~-~----~~~---~~~~~v~l~nPnNPTG~~~-s~~~l~~l~~~~~~~~~~vI~DEay~~~  175 (339)
T PRK06959        116 -----------RVVPLDEAA-D----TLP---AALTHLIVVNPNNPTAERL-PAARLLRWHAQLAARGGTLIVDEAFADT  175 (339)
T ss_pred             -----------EEEeecccc-h----hcc---ccCCEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEECCCccC
Confidence                       122223222 2    222   2345666767789999887 7888999999999999999999999987


Q ss_pred             cccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hc
Q 017259          175 ARSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EK  249 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~  249 (374)
                      ... .. ...... .++++   ||||.++ +|+ |+||+++++++++.+...  ...++.+.+++.++.++++...- +.
T Consensus       176 ~~~-~s-~~~~~~-~~~vi~l~SfSK~~gl~Gl-RiGy~v~~~~li~~l~~~--~~~~~vs~~~q~a~~~~L~~~~~~~~  249 (339)
T PRK06959        176 LPA-AS-LAAHTD-RPGLVVLRSVGKFFGLAGV-RAGFVLAAPALLAALRDA--LGAWTVSGPARHAVRAAFADAAWQAA  249 (339)
T ss_pred             CCc-cc-chhccC-CCCEEEEecChhhcCCcch-heEEEecCHHHHHHHHHh--cCCCCCcHHHHHHHHHHhCcHHHHHH
Confidence            422 11 111111 23333   9999999 899 999999999999888754  23566788898888888753111 13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-CCEEEEecCCC
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLS  328 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~~~lRi~~~~~  328 (374)
                      ..+.++++++++.+.|++++     +.  ..+.+.++|+.++      +..++.+.|.++||.++... .+++||+  ..
T Consensus       250 ~~~~~~~~r~~l~~~L~~~g-----~~--~~~~~~f~~~~~~------~~~~l~~~l~~~GI~vr~~~~~~~lRis--i~  314 (339)
T PRK06959        250 MRERLAADGARLAALLRAHG-----FA--VHATPLFSWTDDP------RAAALHAALARRGIWTRYFAPPPSVRFG--LP  314 (339)
T ss_pred             HHHHHHHHHHHHHHHHHHCC-----CC--ccCcceEEEEeCC------CHHHHHHHHHhCCeEEEECCCCCeEEEE--CC
Confidence            34555555555555555442     21  1124567777654      35789999999999998753 5799999  33


Q ss_pred             CCHHHHHHHHHHHHHHHhccC
Q 017259          329 ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       329 ~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+++++++++|+++++ .+
T Consensus       315 ~~~~e~~~l~~al~~~~~-~~  334 (339)
T PRK06959        315 ADEAEWQRLEDALAECVP-TL  334 (339)
T ss_pred             CCHHHHHHHHHHHHHHHH-HH
Confidence            578899999999998887 54

>PTZ00376 aspartate aminotransferase; Provisional

Probab=99.94  E-value=3.2e-25  Score=209.80  Aligned_cols=299  Identities=13%  Similarity=0.119  Sum_probs=191.3

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEE--ecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVL--PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~--~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..++++.+++++....    ..++++  .|.|+++|+..++.++...  ..+|     |+|++.+|+|+++...+...+
T Consensus        73 G~~~lR~aia~~~~~~~~~~~~~~~v~~~~t~G~~~al~~~~~~l~~~--~~~G-----d~Vlv~~P~y~~~~~~~~~~G  145 (404)
T PTZ00376         73 GLQSFIEAAQKLLFGEASYALAEKRIATVQALSGTGALRLGFEFLKRF--LPAG-----TTVYVSNPTWPNHVNIFKSAG  145 (404)
T ss_pred             CCHHHHHHHHHHhcCCCccccccCeEEEeeccCcchHHHHHHHHHHHh--cCCC-----CEEEEcCCCchhHHHHHHHcC
Confidence            33444555555554332    345777  4899999999888755432  5678     999999999998877666554


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ......    ++..+.. . -.|++.++++++++.++++++++++++||||.+. +++.+++|.++|++||++||+||+|
T Consensus       146 ~~~~~v----~l~~~~~-~-~~d~~~l~~~~~~~~~~~~~~~~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y  218 (404)
T PTZ00376        146 LNVKEY----RYYDPKT-K-GLDFDGMLEDLRTAPNGSVVLLHACAHNPTGVDP-TEEQWKEIADVMKRKNLIPFFDMAY  218 (404)
T ss_pred             Cceeec----cccCccc-C-CcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEehhh
Confidence            332211    1100000 0 0178899998876444567888888999999888 8999999999999999999999999


Q ss_pred             cCCccccc---Ccccc-cCCCCCc---EEEeccccc-CCccchhhh---eeCHHHHhhcCCC---CCCCCC-CCCHHHHH
Q 017259          172 SGLARSGR---MLASD-WEEVRPD---MVILGKALG-GGVIPVSAV---LADKEVMLCIQPG---EHGSTF-GGNPLASA  236 (374)
Q Consensus       172 ~~~~~~g~---~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~---~~~~~~~~~~~~~---~~~~~~-~~~~~~~~  236 (374)
                      .++.+.+.   ..... .....++   +.||||.++ +|+ |+||+   .+++++.+.+...   ....++ +.+.+++.
T Consensus       219 ~~~~~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RvG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~q~  297 (404)
T PTZ00376        219 QGFASGDLDKDAYAIRLFAERGVEFLVAQSFSKNMGLYGE-RIGALHIVCANKEEAANVLSQLKLIIRPMYSSPPIHGAR  297 (404)
T ss_pred             cCccCCCHHHHHHHHHHHHhcCCcEEEEEeCCCccccccc-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCchHHHH
Confidence            98754321   10111 1111122   349999999 899 99997   4677654443211   012233 44677888


Q ss_pred             HHHHHHHHHhh-h-------cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          237 VAIASLDVIRD-E-------KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       237 aa~~al~~~~~-~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ++..+++.-.. +       +..++++++++.+.+.|++..  .+..... .+..|.|+|+.+        ..+++++|.
T Consensus       298 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~p~gg~f~~~~~--------~~~~~~~L~  367 (404)
T PTZ00376        298 IADRILSDPELRAEWLSELKEMSGRIQNMRQLLYDELKALG--SPGDWEHIINQIGMFSFTGL--------TKEQVERLI  367 (404)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCcccccccCceEEEecCC--------CHHHHHHHH
Confidence            88777753210 1       223445556666666665542  1101111 223355566543        257888888


Q ss_pred             HC-CeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ER-GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~-Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++ ||.+.|++    ||+++. .+.++++.++++|++++.
T Consensus       368 ~~~~v~v~p~~----Ris~~~-~~~~~~~~~~~~l~~~~~  402 (404)
T PTZ00376        368 EKYHIYLLDNG----RISVAG-LTSKNVDYVAEAIHDVVR  402 (404)
T ss_pred             HhCCEeecCCC----eEEEec-cCHHhHHHHHHHHHHHHh
Confidence            77 99998873    999532 789999999999998875

>PRK05387 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=5.1e-25  Score=205.21  Aligned_cols=284  Identities=16%  Similarity=0.205  Sum_probs=188.8

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++.+.++++++  .+++++|+|+++++..+++++     ..+|     |+|++.+|+|..+.......+....
T Consensus        57 y~~~~~~~lr~aia~~~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~~~~  126 (353)
T PRK05387         57 YPDPNADALRQAIAAYYGLDPEQVFVGNGSDEVLAHAFLAF-----FNHD-----RPLLFPDITYSFYPVYAGLYGIPYE  126 (353)
T ss_pred             CCCCcHHHHHHHHHHHhCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCHHHHHHHHHHcCCEEE
Confidence            444556788888888874  568999999999999999988     5667     9999999998555433332221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                       .   .+...+..    -|++++++       .++++++.+++||+|.+.+ .+.+++|++.+  +++++|+||+|.+|+
T Consensus       127 -~---v~~~~~~~----~d~~~l~~-------~~~~v~~~~P~NPtG~~~~-~~~~~~l~~~~--~~~~livDe~y~~~~  188 (353)
T PRK05387        127 -E---IPLDDDFS----IDVEDYLR-------PNGGIIFPNPNAPTGIALP-LAEIERILAAN--PDSVVVIDEAYVDFG  188 (353)
T ss_pred             -E---eecCCCCC----CCHHHHHh-------cCCEEEEeCCCCCCCCCCC-HHHHHHHHHhC--CCcEEEEeCcccccC
Confidence             0   01101100    15666642       3456777778999999885 55555554433  299999999998774


Q ss_pred             ccccCcccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHh-hhc
Q 017259          176 RSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHG-STFGGNPLASAVAIASLDVIR-DEK  249 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~aa~~al~~~~-~~~  249 (374)
                      .  .. .....+..++   +.||||.++ +|+ |+||+++++++.+.+...... .+++.+.+++.++.++++..+ .++
T Consensus       189 ~--~~-~~~~~~~~~~~i~~~S~SK~~~~~Gl-R~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~  264 (353)
T PRK05387        189 G--ES-AIPLIDRYPNLLVVQTFSKSRSLAGL-RVGFAIGHPELIEALNRVKNSFNSYPLDRLAQAGAIAAIEDEAYFEE  264 (353)
T ss_pred             C--cc-hHHHHhhCCCEEEEEehhHhhcchhh-hceeeecCHHHHHHHHHhhccCCCCCcCHHHHHHHHHHhcCHHHHHH
Confidence            2  11 1111111222   238999998 899 999999999988887654332 356778888888877775211 123


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEec
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTP  325 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~  325 (374)
                      ..++++++++++.+.|++.     ++. ..++.+.++|+.++..    +..+++++|.++||.+++..    .+++|+++
T Consensus       265 ~~~~~~~~~~~l~~~L~~~-----g~~-~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~~~~~~~~~~iRis~  334 (353)
T PRK05387        265 TRAKVIATRERLVEELEAL-----GFE-VLPSKANFVFARHPSH----DAAELAAKLRERGIIVRHFNKPRIDQFLRITI  334 (353)
T ss_pred             HHHHHHHHHHHHHHHHHHC-----CCe-ECCCcCcEEEEECCCC----CHHHHHHHHHHCCEEEEECCCCCCCCeEEEEe
Confidence            4455555666666666543     221 1234567777776643    57899999999999996542    47999994


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 017259          326 PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +   +.+++++++++|++++.
T Consensus       335 ~---~~~~~~~~~~~L~~~~~  352 (353)
T PRK05387        335 G---TDEEMEALVDALKEILA  352 (353)
T ss_pred             C---CHHHHHHHHHHHHHHhh
Confidence            4   67999999999998875

>PRK06836 aspartate aminotransferase; Provisional

Probab=99.94  E-value=1.5e-24  Score=204.63  Aligned_cols=293  Identities=15%  Similarity=0.169  Sum_probs=195.0

Q ss_pred             CCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           20 NDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .....++.+.+++++        ..+++++|+|+++++..++..+     ..+|     |.|++.+|+|.++.......+
T Consensus        72 ~~g~~~lr~~ia~~l~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vli~~p~~~~~~~~~~~~g  141 (394)
T PRK06836         72 NAGYPEVREAIAESLNRRFGTPLTADHIVMTCGAAGALNVALKAI-----LNPG-----DEVIVFAPYFVEYRFYVDNHG  141 (394)
T ss_pred             CCCCHHHHHHHHHHHHHHhCCCCCcCcEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCCccHHHHHHHcC
Confidence            344445555555543        4578999999999999999887     4567     999999999987654433322


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh------cCCEE
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILM  165 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~------~~i~l  165 (374)
                      ......    +...+  .. -.|+++++++++   ++++++++++++|++|.+. +.+.+++|.++|++      ||++|
T Consensus       142 ~~v~~v----~~~~~--~~-~~d~~~l~~~~~---~~~~~v~~~~p~NPtG~~~-~~~~~~~l~~la~~~~~~~~~~~~i  210 (394)
T PRK06836        142 GKLVVV----PTDTD--TF-QPDLDALEAAIT---PKTKAVIINSPNNPTGVVY-SEETLKALAALLEEKSKEYGRPIYL  210 (394)
T ss_pred             CEEEEE----ecCCc--cC-cCCHHHHHhhcC---cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHhhhccCCCeEE
Confidence            111111    11010  00 027889988886   4788899888899999888 79999999999999      89999


Q ss_pred             EEeccccCCcccccCcc--cccCCCCCcEEEeccccc-CCccchhhheeCHHHHhh------cCCCCC-CCCCCCCHHHH
Q 017259          166 IADEIQSGLARSGRMLA--SDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLC------IQPGEH-GSTFGGNPLAS  235 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~--~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~------~~~~~~-~~~~~~~~~~~  235 (374)
                      |+||+|.++.+.+....  ....+...-+.||||.++ +|+ |+||+++++++.+.      +..... ......+.+.+
T Consensus       211 i~De~y~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pGl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q  289 (394)
T PRK06836        211 ISDEPYREIVYDGAEVPYIFKYYDNSIVVYSFSKSLSLPGE-RIGYIAVNPEMEDADDLVAALVFANRILGFVNAPALMQ  289 (394)
T ss_pred             EEeccccccccCCCCCCChHHccCcEEEEecchhhccCcce-eeEEEecCHHHhhhHHHHHHHHHHhhccccccCCHHHH
Confidence            99999998754432211  111111111338999998 899 99999998765322      111111 11234566777


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      .++...++.   ....+.++++.+.+.+.|+..     +.....+..|.++|+.++..    +..++++.|.++||.+.+
T Consensus       290 ~~~~~~l~~---~~~~~~~~~~r~~l~~~L~~~-----g~~~~~~~gg~~~~~~~~~~----~~~~~~~~l~~~gv~v~~  357 (394)
T PRK06836        290 RVVAKCLDA---TVDVSIYKRNRDLLYDGLTEL-----GFECVKPQGAFYLFPKSPEE----DDVAFCEKAKKHNLLLVP  357 (394)
T ss_pred             HHHHHHhCC---hHHHHHHHHHHHHHHHHHHhC-----CCEeecCCceEEEEEeCCCC----CHHHHHHHHHhCCEEEEC
Confidence            766655542   222345555566666655543     22222233467777767653    577889999999999998


Q ss_pred             CC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 TH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.    .+++||++.  .+++++++++++|+++++ ..
T Consensus       358 g~~f~~~~~iRi~~~--~~~~~~~~~i~~l~~~l~-~~  392 (394)
T PRK06836        358 GSGFGCPGYFRLSYC--VDTETIERSLPAFEKLAK-EY  392 (394)
T ss_pred             chhcCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence            73    589999965  589999999999999987 53

>TIGR01141 hisC histidinol-phosphate aminotransferase

Probab=99.94  E-value=3.2e-25  Score=206.05  Aligned_cols=283  Identities=19%  Similarity=0.205  Sum_probs=190.0

Q ss_pred             CCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           19 YNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      +.+...++++.++++++  .+++++++|+++++..+++.+     ..+|     |+|++++|+|..+.......+.... 
T Consensus        52 ~~~~~~~lr~~ia~~~~~~~~~i~~~~G~~~~l~~~~~~l-----~~~g-----d~v~~~~p~y~~~~~~~~~~g~~~~-  120 (346)
T TIGR01141        52 PDPDPAELKQALADYYGVDPEQILLGNGSDEIIELLIRAF-----LEPG-----DAVLVPPPTYSMYEISAKIHGAEVV-  120 (346)
T ss_pred             CCCCHHHHHHHHHHHhCcChHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCHHHHHHHHHHcCCeEE-
Confidence            34455789999999876  468999999999998888877     4566     9999999998543322222221110 


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                         ..+...+.    ..|++++++.+.   ++++++++++++|++|.+.+ .+.+.++++.|+ +|+++|+||+|+++..
T Consensus       121 ---~~~~~~~~----~~d~~~l~~~~~---~~~~~v~l~~p~NptG~~~~-~~~~~~l~~~~~-~~~~ii~D~~y~~~~~  188 (346)
T TIGR01141       121 ---KVPLDEDG----QLDLEDILVAID---DKPKLVFLCSPNNPTGNLLS-RSDIEAVLERTP-EDALVVVDEAYGEFSG  188 (346)
T ss_pred             ---EeccCCCC----CCCHHHHHHhcC---CCCCEEEEeCCCCCCCCCCC-HHHHHHHHHhCC-CCcEEEEECchhhhcC
Confidence               11111110    137888888764   57888999888999998885 444445554444 5999999999997643


Q ss_pred             cccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhcHH
Q 017259          177 SGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEKLA  251 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~~~  251 (374)
                      .+....  .....++++   |+||.++ +|+ |+||++.++++.+.++..  ..+++.+++++.++.++++... -....
T Consensus       189 ~~~~~~--~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~  263 (346)
T TIGR01141       189 EPSTLP--LLAEYPNLIVLRTLSKAFGLAGL-RIGYAIANAEIIDALNKV--RAPFNLSRLAQAAAIAALRDDDFIEKTV  263 (346)
T ss_pred             CccHHH--HHhhCCCEEEEehhhHhhhchhh-hceeeecCHHHHHHHHhc--cCCCCCCHHHHHHHHHHhCCHHHHHHHH
Confidence            222111  111123433   8899996 688 999999999988888753  2346678888888877775432 11334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEEEecC
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTPP  326 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~~~  326 (374)
                      ++++++.+++++.|+..    +++. ..++.+.++|+.++.     +..++.++|.++||.+.++.     .+++|++++
T Consensus       264 ~~~~~~~~~l~~~L~~~----~g~~-~~~~~g~~~~~~~~~-----~~~~~~~~L~~~gI~v~~g~~f~~~~~~iRls~~  333 (346)
T TIGR01141       264 EEINAERERLYDGLKKL----PGLE-VYPSDANFVLIRFPR-----DADALFEALLEKGIIVRDLNSYPGLPNCLRITVG  333 (346)
T ss_pred             HHHHHHHHHHHHHHHhc----CCCE-ECCCcCCEEEEecCC-----CHHHHHHHHHHCCeEEEeCCCcCCCCCeEEEecC
Confidence            44555555555555433    2222 223357888887764     36789999999999998864     589999944


Q ss_pred             CCCCHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALH  342 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~  342 (374)
                         ++++++++++.|+
T Consensus       334 ---~~~~i~~~~~~l~  346 (346)
T TIGR01141       334 ---TREENDRFLAALR  346 (346)
T ss_pred             ---CHHHHHHHHHHhC
Confidence               7899999998763

Histidinol-phosphate aminotransferase is a pyridoxal-phosphate dependent enzyme.

>PRK08637 hypothetical protein; Provisional

Probab=99.94  E-value=1.4e-24  Score=204.48  Aligned_cols=303  Identities=11%  Similarity=0.097  Sum_probs=193.3

Q ss_pred             CCcHHHHHHHHhccc---C---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMF---G---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~---~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++++.+++++.+..   .   .+++++|+|+++++..++.++     .++|     |+|++.+|+|..+........+.
T Consensus        47 ~~lr~~ia~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~Vlv~~P~y~~~~~~~~~~~g~  116 (388)
T PRK08637         47 PELRDLWQEKMLRENPSLSGKKMSLPIVTNALTHGLSLVADLF-----VDQG-----DTVLLPDHNWGNYKLTFNTRRGA  116 (388)
T ss_pred             HHHHHHHHHHHhccCccccccccceeeEccchHHHHHHHHHHh-----cCCC-----CEEEEcCCCCccHHHHHHHhcCC
Confidence            334445555554432   1   146899999999999999888     5667     99999999997776543222221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHh-cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-----cCCEEEE
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILMIA  167 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-----~~i~li~  167 (374)
                      ...   ..++..+-..   -|+++++++++. ..+.++++++++++||||.+. +++.+++|+++|++     ||++||+
T Consensus       117 ~vv---~v~~~~~~~~---~d~~~l~~~~~~~~~~~~~~~~~~~P~NPTG~~~-s~~~~~~l~~~~~~~~~~~~~~~iI~  189 (388)
T PRK08637        117 EIV---TYPIFDEDGG---FDTDALKEALQAAYNKGKVIVILNFPNNPTGYTP-TEKEATAIVEAIKELADAGTKVVAVV  189 (388)
T ss_pred             EEE---EecccCCCCc---CCHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHHHhcCCcEEEEe
Confidence            111   1111000000   178999888862 223455677777899999777 89999999999886     9999999


Q ss_pred             eccccCCcccccCc-c-c-ccCCCCCc--EE---Eeccccc-CCccchhhheeC------HHHHhhcCCC----CCCCCC
Q 017259          168 DEIQSGLARSGRML-A-S-DWEEVRPD--MV---ILGKALG-GGVIPVSAVLAD------KEVMLCIQPG----EHGSTF  228 (374)
Q Consensus       168 Dea~~~~~~~g~~~-~-~-~~~~~~~d--~~---s~sK~~~-~G~~~~G~~~~~------~~~~~~~~~~----~~~~~~  228 (374)
                      ||+|.++.+.+... . . ...+...+  ++   |+||.++ +|+ |+||++.+      +++.+.+...    .....+
T Consensus       190 De~Y~~l~~~~~~~~~~~~~~~~~~~~vi~i~~~s~SK~~~~pGl-RlG~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  268 (388)
T PRK08637        190 DDAYFGLFYEDSYKESLFAALANLHSNILAVKLDGATKEEFVWGF-RVGFITFGTKAGSSQTVKEALEKKVKGLIRSNIS  268 (388)
T ss_pred             cccchhcccCCccchhhHHHhhcccccceEEEeccccccCCCccc-ceEEEEEccccCCcHHHHHHHHHHHHHHhhcccC
Confidence            99999875544321 1 1 11122223  22   7899866 799 99998743      5666666421    112234


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH---HHHHhC--CCceee-EEEEeeeEEEEeccCCCchhHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF---KIQQQF--PNYVKE-VRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~---~~~~~~--~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      +.+.+++.++.++++   +..+.+++++....++++..   +.....  ++.... .+..|.++|+.++..    +..++
T Consensus       269 ~~s~~~q~a~~~~l~---~~~~~~~~~~~~~~~~~r~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~l~~~----~~~~l  341 (388)
T PRK08637        269 NGPHPSQSAVLRALN---SPEFDKEKQEKFQILKERYEKTKEVLYDGKYDDAWQAYPFNSGYFMCLKLKGV----DAEEL  341 (388)
T ss_pred             CCCcHHHHHHHHHhC---CHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCcccccccceEEEEecCChH----HHHHH
Confidence            678888888887775   23344444443333333322   222111  111122 234577888777632    57889


Q ss_pred             HHHHH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +++|+ ++||.+.+...+++||+++. .+.+++++++++|+++++ ++
T Consensus       342 ~~~l~~~~gv~~~~~~~~~iRi~~~~-~~~~~i~~~~~~l~~~~~-~~  387 (388)
T PRK08637        342 RVHLLEKYGIGTIALNETDLRIAFSC-VEEEDIPELFDSIYKAIK-DL  387 (388)
T ss_pred             HHHHhhhcceEEEeccCCceEEEeec-CCHHHHHHHHHHHHHHHH-hc
Confidence            99996 56998877667899999664 578999999999999988 65

>TIGR03542 DAPAT_plant LL-diaminopimelate aminotransferase

Probab=99.94  E-value=5.2e-25  Score=208.36  Aligned_cols=300  Identities=10%  Similarity=0.030  Sum_probs=186.6

Q ss_pred             CCCcHHHHHHHHhcc-----cCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           19 YNDKFPVFAERLTSM-----FGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~-----~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +.....++.+.++++     ...+++++|+|+++++...+ .+     ..+|     |+|++..|+|.++...+...+..
T Consensus        73 p~~g~~~lr~aia~~~~~~~~~~d~I~it~Ga~~al~~l~-~l-----~~~g-----d~Vlv~~P~y~~~~~~~~~~g~~  141 (402)
T TIGR03542        73 PEQGYPFLREAIAENDYRGRIDPEEIFISDGAKCDVFRLQ-SL-----FGSD-----NTVAVQDPVYPAYVDSNVMAGRA  141 (402)
T ss_pred             CCCCCHHHHHHHHHHHHhcCCCHHHEEECCCcHHHHHHHH-Hh-----cCCC-----CEEEEeCCCCcchHHHHHHcCCc
Confidence            344555666666653     25679999999999998753 33     3456     89999999998876655544331


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ..... - -.+..+..++.+.-+.+...+.+. ++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.+
T Consensus       142 ~~~~~-~-~~~~~~~~v~~~~~~~~~~~~~~~-~~~~~i~l~nP~NPTG~~~-s~~~~~~l~~~a~~~~~~iI~De~y~~  217 (402)
T TIGR03542       142 GVLDD-D-GRYSKITYLPCTKENNFIPDLPEE-PKIDIIYLCSPNNPTGTVL-TKEQLKELVDYANEHGSLILFDAAYSA  217 (402)
T ss_pred             ccccc-c-cccceEEEeecchhhCCCCCcccc-CCceEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCeEEEEEchhhh
Confidence            11000 0 000122222321100110001111 3678888888899999877 899999999999999999999999998


Q ss_pred             Cccccc-Ccccc-cCCCCCc---EEEeccccc-CCccchhhheeCHHHH--------hhcCCCCCCCCCCCCHHHHHHHH
Q 017259          174 LARSGR-MLASD-WEEVRPD---MVILGKALG-GGVIPVSAVLADKEVM--------LCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       174 ~~~~g~-~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      |...+. ..... ..+....   +-||||.++ +|+ |+||++++++++        ..+.........+.+.+++.++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~vi~~~SfSK~~g~pGl-RiG~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~s~~~q~~~~  296 (402)
T TIGR03542       218 FISDPSLPHSIFEIPGAKECAIEFRSFSKTAGFTGV-RLGWTVVPKELTYADGHSVIQDWERRQCTKFNGASYPVQRAAE  296 (402)
T ss_pred             hccCCCCCcchhhCCCCcccEEEEecCccccCCCCc-ceEEEEecHHHhhcchhhHHHHHHHHhhhcccCCCHHHHHHHH
Confidence            754332 11111 1111112   338999997 899 999999998775        22211111122246778887776


Q ss_pred             HHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEecc
Q 017259          240 ASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKP  315 (374)
Q Consensus       240 ~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~  315 (374)
                      .++.....   .+..+.++++.+.+.+.|+..     +........+.++|+.++...   +..++++.|+ +.||.+.+
T Consensus       297 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~~~-----~~~~~~~~~~~f~~v~l~~~~---~~~~l~~~l~~~~gv~v~p  368 (402)
T TIGR03542       297 AAYAGEGLQPILEAISYYMENARILRKALEAA-----GFKVYGGEHAPYLWVKTPEGI---SSWDFFDFLLYQYHVVGTP  368 (402)
T ss_pred             HHHcCcchhHHHHHHHHHHHHHHHHHHHHHhc-----CceecCCCceeEEEEECCCCC---CHHHHHHHHHHhCCEEEeC
Confidence            66642111   122344445555555555443     221111225778999887643   5678999988 46999988


Q ss_pred             CC------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          316 TH------DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       316 ~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +.      ++++||+  +..+++++++++++|+++
T Consensus       369 g~~f~~~~~~~iRis--~~~~~~~l~~~l~~l~~~  401 (402)
T TIGR03542       369 GSGFGPSGEGFVRFS--AFGKRENIVEACERIKEA  401 (402)
T ss_pred             chhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHhh
Confidence            62      5799999  445889999999999875

This clade of the pfam00155 superfamily of aminotransferases includes several which are adjacent to elements of the lysine biosynthesis via diaminopimelate pathway (GenProp0125). This clade includes characterized species in plants and Chlamydia. Every member of this clade is from a genome which possesses most of the lysine biosynthesis pathway but lacks any of the known succinylases, desuccinylases, acetylases or deacetylases typical of the acylated versions of this pathway nor do they have the direct, NADPH-dependent enzyme (ddh).

>TIGR03576 pyridox_MJ0158 pyridoxal phosphate enzyme, MJ0158 family

Probab=99.94  E-value=1.4e-24  Score=200.03  Aligned_cols=280  Identities=11%  Similarity=0.016  Sum_probs=187.9

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec---cCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC---GCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~---~~yhg~~~~~~~~~~   92 (374)
                      ++.+.+++|+++|++++|.  +++++++||++|+..++.++     .++|     |+|++..   |+|......+ .+.+
T Consensus        51 g~~~~~~~Le~~lA~~~g~~~e~ilv~~gg~~a~~~~~~al-----~~~g-----d~Vli~~~d~p~~~s~~~~~-~l~g  119 (346)
T TIGR03576        51 GPAIFEEKVQELGREHLGGPEEKILVFNRTSSAILATILAL-----EPPG-----RKVVHYLPEKPAHPSIPRSC-KLAG  119 (346)
T ss_pred             CCHHHHHHHHHHHHHHcCCCcceEEEECCHHHHHHHHHHHh-----CCCC-----CEEEECCCCCCCchhHHHHH-HHcC
Confidence            4578899999999999988  89999999999999999988     5667     8888753   4543322222 2221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                                    ...+.++++++++.    . ++++++++++ .+++|.+. +++.+++|+++|++||++||+||+|+
T Consensus       120 --------------a~~~~~~~l~~l~~----~-~~~~lIiitg-~s~~G~v~-~~~~L~~i~~la~~~~~~livDEAy~  178 (346)
T TIGR03576       120 --------------AEYFESDELSELKK----I-DGTSLVVITG-STMDLKVV-SEEDLKRVIKQAKSKEAIVLVDDASG  178 (346)
T ss_pred             --------------CEEeccCCHHHHhh----C-cCceEEEEEC-CCCCCccc-CHHHHHHHHHHHHHcCCEEEEECCcc
Confidence                          11122345655432    1 3577777765 46778776 57889999999999999999999998


Q ss_pred             CCc--ccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259          173 GLA--RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL  250 (374)
Q Consensus       173 ~~~--~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~  250 (374)
                      .+.  ..+.... ...+.+.-+.||||++ +|+ ++||+++++++++.+........++.+++.++++.++|+....+..
T Consensus       179 ~~~~~~~~~~~~-~~~~~divv~s~SKal-aG~-r~G~v~~~~~li~~l~~~~~~~~~s~~~~~~~aa~~aL~~~~~~~~  255 (346)
T TIGR03576       179 ARVRRLYGQPPA-LDLGADLVVTSTDKLM-DGP-RGGLLAGRKELVDKIKSVGEQFGLEAQAPLLAAVVRALEEFELSRI  255 (346)
T ss_pred             ccccccCCCCCH-HHcCCcEEEeccchhc-ccc-ceEEEEeCHHHHHHHHHhhcCcccCccHHHHHHHHHHHhhccHHHH
Confidence            431  1222211 1122222234889965 356 8999999999999888765555666788899999999976543445


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEEEec
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVRLTP  325 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~~  325 (374)
                      .+.++++.+.+.+.++.    + .+.   +...+|+++.++...   +.+.+.+.|.++||.++|+.     ++++||++
T Consensus       256 ~~~l~~r~~~~~~~l~~----~-~~~---~~~~~f~~~~~~~~~---~~~~~~~ll~~~gV~v~~~~~f~~~~~~vRis~  324 (346)
T TIGR03576       256 RDAFKRKEEVYLRLFDK----L-NVE---RTPTGFVIKGVEEEK---LIEIGLDLLRNYGIITITAVGMPGASKTLRFDL  324 (346)
T ss_pred             HHHHHHHHHHHHHHHHh----C-CCC---cCCCeEEEEeCCCCC---HHHHHHHHHHhCCEEEeCCcccCCCCCeEEEEE
Confidence            56666666666665553    2 121   123347777665321   23445555667899999853     57999993


Q ss_pred             CCCCCHH---HHHHHHHHHHHHH
Q 017259          326 PLSISSN---ELQEGSKALHDVL  345 (374)
Q Consensus       326 ~~~~~~e---~i~~~~~~l~~~~  345 (374)
                        ...++   ++++++++|++.+
T Consensus       325 --~~~~~~~~~~~~~~~al~~~~  345 (346)
T TIGR03576       325 --AAKDAERIGDDYLVEAVKDSL  345 (346)
T ss_pred             --ecChHHhcCHHHHHHHHHhcc
Confidence              33443   7999999988654

Members of this archaeal protein family are pyridoxal phosphate enzymes of unknown function. Sequence similarity to SelA, a bacterial enzyme of selenocysteine biosynthesis, has led to some members being misannotated as functionally equivalent, but selenocysteine is made on tRNA in Archaea by a two-step process that does not involve a SelA homolog.

>TIGR01140 L_thr_O3P_dcar L-threonine-O-3-phosphate decarboxylase

Probab=99.94  E-value=8.7e-25  Score=201.37  Aligned_cols=274  Identities=18%  Similarity=0.228  Sum_probs=187.6

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+++...++++.++++++.  +++++|+|+++++..+..++      .+      .+|++.+|+|+.+.......+    
T Consensus        44 y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~i~~~~~~l------~~------g~vl~~~p~y~~~~~~~~~~g----  107 (330)
T TIGR01140        44 YPDPEYDELRAAAAAYYGLPAASVLPVNGAQEAIYLLPRLL------AP------GRVLVLAPTYSEYARAWRAAG----  107 (330)
T ss_pred             CCCccHHHHHHHHHHHhCCChhhEEECCCHHHHHHHHHHHh------CC------CeEEEeCCCcHHHHHHHHHcC----
Confidence            4455568899999998864  68999999999988865543      12      358889999977654433221    


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                                 ...++++|++++++.++    ++++++++.++|++|.+. +.+.+++|+++|++||++||+||+|.++.
T Consensus       108 -----------~~~~~~~d~~~l~~~~~----~~~~v~i~~p~NPtG~~~-~~~~~~~l~~~a~~~~~~ii~De~y~~~~  171 (330)
T TIGR01140       108 -----------HEVVELPDLDRLPAALE----ELDVLVLCNPNNPTGRLI-PPETLLALAARLRARGGWLVVDEAFIDFT  171 (330)
T ss_pred             -----------CEEEEeCCHHHHHhhcc----cCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhHhcCCEEEEECcccccC
Confidence                       22222338898888774    355677777788899877 89999999999999999999999998775


Q ss_pred             ccccCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259          176 RSGRMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA  251 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~  251 (374)
                      .....  ....+..++++   ||||.++ +|+ |+||+++++++++.+....  ..+..+.+++.++...++   +.++.
T Consensus       172 ~~~~~--~~~~~~~~~~i~~~S~SK~~g~~G~-R~G~i~~~~~~~~~l~~~~--~~~~~s~~~q~~~~~~l~---~~~~~  243 (330)
T TIGR01140       172 PDASL--APQAARFPGLVVLRSLTKFFGLAGL-RLGFVVAHPALLARLREAL--GPWTVNGPARAAGRAALA---DTAWQ  243 (330)
T ss_pred             Cccch--hhHhccCCCEEEEEecchhhcCchh-hhhheeCCHHHHHHHHhcC--CCCCchHHHHHHHHHHHh---chHHH
Confidence            33111  11111122333   9999999 799 9999999999888887542  345667788777776665   33444


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEec
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTP  325 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~  325 (374)
                      ++.+++.+..++.+.+....++ .+...++.+.|+|+.++      +..+++++|.++||.+.++.      .+++||++
T Consensus       244 ~~~~~~~~~~~~~l~~~L~~~~-~~~~~~~~~~f~~~~~~------~~~~l~~~l~~~gi~v~pg~~f~~~~~~~iRi~~  316 (330)
T TIGR01140       244 AATRARLAAERARLAALLARLG-GLEVVGGTALFLLVRTP------DAAALHEALARRGILIRDFDNFPGLDPRYLRFAL  316 (330)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-CceECCCCCeEEEEEcC------CHHHHHHHHHHCCEEEEECCCCCCCCCCEEEEEe
Confidence            4444444444454444444432 22223446788887765      35689999999999998852      37999994


Q ss_pred             CCCCCHHHHHHHHHHH
Q 017259          326 PLSISSNELQEGSKAL  341 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l  341 (374)
                      +  ...++ ++++.+|
T Consensus       317 ~--~~~~~-~~~~~~l  329 (330)
T TIGR01140       317 P--TDEEN-DRLEEAL  329 (330)
T ss_pred             c--CHHHH-HHHHHhh
Confidence            3  33344 7777665

This family contains pyridoxal phosphate-binding class II aminotransferases (see PFAM:PF00222) closely related to, yet distinct from, histidinol-phosphate aminotransferase (HisC). It is found in cobalamin biosynthesis operons in Salmonella typhimurium and Bacillus halodurans (each of which also has HisC) and has been shown to have L-threonine-O-3-phosphate decarboxylase activity in Salmonella. Although the gene symbol cobD was assigned in Salmonella, cobD in other contexts refers to a different cobalamin biosynthesis enzyme, modeled by pfam03186 and called cbiB in Salmonella.

>PRK08354 putative aminotransferase; Provisional

Probab=99.94  E-value=2.5e-24  Score=196.70  Aligned_cols=265  Identities=15%  Similarity=0.124  Sum_probs=179.2

Q ss_pred             cHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCC
Q 017259           22 KFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG  101 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  101 (374)
                      ....+.++++++++ +++++|+|+++++..++.++      .+|     |+|++..|+|.++...+...+.+.       
T Consensus        41 ~~~~l~~~ia~~~~-~~I~vt~G~~~al~~~~~~~------~~g-----d~vlv~~P~y~~~~~~~~~~g~~~-------  101 (311)
T PRK08354         41 YYEWLEEEFSKLFG-EPIVITAGITEALYLIGILA------LRD-----RKVIIPRHTYGEYERVARFFAARI-------  101 (311)
T ss_pred             ChHHHHHHHHHHHC-CCEEECCCHHHHHHHHHHhh------CCC-----CeEEEeCCCcHHHHHHHHHcCCEE-------
Confidence            35778999999887 57999999999998776433      357     999999999988766655444221       


Q ss_pred             CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCc
Q 017259          102 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML  181 (374)
Q Consensus       102 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~  181 (374)
                            ..++ .|++.+++.++    +++++++++++||+|.+. +.+.+++|.++|++||+++|+||+|.+|...+...
T Consensus       102 ------~~~~-~d~~~l~~~~~----~~~~vi~~~P~NPTG~~~-~~~~l~~l~~~a~~~~~~li~De~y~~f~~~~~~~  169 (311)
T PRK08354        102 ------IKGP-NDPEKLEELVE----RNSVVFFCNPNNPDGKFY-NFKELKPLLDAVEDRNALLILDEAFIDFVKKPESP  169 (311)
T ss_pred             ------eecC-CCHHHHHHhhc----CCCEEEEecCCCCCCCcc-CHHHHHHHHHHhhhcCcEEEEeCcchhcccccccc
Confidence                  1112 27888887775    344566666688999877 89999999999999999999999999875433211


Q ss_pred             ccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHH
Q 017259          182 ASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE  260 (374)
Q Consensus       182 ~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~  260 (374)
                        . .....-+-||||.++ +|+ |+||+++.   .+.++...  ..+..+..+++++.+.++    +. .+++++..+.
T Consensus       170 --~-~~~vi~~~S~SK~~~l~Gl-RiG~~v~~---~~~l~~~~--~~~~~~~~~~~~~~~~~~----~~-~~~~~~~~~~  235 (311)
T PRK08354        170 --E-GENIIKLRTFTKSYGLPGI-RVGYVKGF---EEAFRSVR--MPWSIGSTGYAFLEFLIE----DD-FEHLRKTMPL  235 (311)
T ss_pred             --C-CCcEEEEeccHhhcCCccc-eeeeeeeh---HHHHHHcC--CCccCCHHHHHHHHHHHH----hH-HHHHHHHHHH
Confidence              1 111112338999999 899 99998883   33443321  234455555555544433    11 2344444555


Q ss_pred             HHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEecCCCCCHHHHHH
Q 017259          261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQE  336 (374)
Q Consensus       261 ~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~  336 (374)
                      +++..+.+...+.     .++.+.++++.++      +..++++.|.++||.++++.    ++++||+   ....++.++
T Consensus       236 ~~~~~~~l~~~l~-----~~~~~~~~~~~~~------~~~~~~~~l~~~gv~v~~g~~f~~~~~iRi~---~~~~~~~~~  301 (311)
T PRK08354        236 IWREKERFEKALY-----VKSDANFFIKDVG------DAEKFVEFLKRNGILVRDCTSFGLPGYIRFS---VRDREENEK  301 (311)
T ss_pred             HHHHHHHHHHhcC-----CCCCCcEEEEECC------CHHHHHHHHHHCCeEEEecccCCCCCeEEEE---eCCHHHHHH
Confidence            5554444332221     2345667766543      45789999999999999874    4899999   446677888


Q ss_pred             HHHHHHHHH
Q 017259          337 GSKALHDVL  345 (374)
Q Consensus       337 ~~~~l~~~~  345 (374)
                      ++++|++++
T Consensus       302 l~~al~~~~  310 (311)
T PRK08354        302 LIRALREWR  310 (311)
T ss_pred             HHHHHHHhh
Confidence            888887653

>PRK09265 aminotransferase AlaT; Validated

Probab=99.94  E-value=4.2e-24  Score=202.37  Aligned_cols=284  Identities=13%  Similarity=0.067  Sum_probs=183.8

Q ss_pred             CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC
Q 017259           35 GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD  114 (374)
Q Consensus        35 ~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d  114 (374)
                      ..+++++++|+++++..++..+     .++|     |+|++.+|+|..+...+...+......    +...+.. . ..|
T Consensus        94 ~~~~i~~t~G~~~~l~~~~~~~-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~v~~----~~~~~~~-~-~~d  157 (404)
T PRK09265         94 DVDDIYIGNGVSELIVMAMQAL-----LNNG-----DEVLVPAPDYPLWTAAVSLSGGKPVHY----LCDEEAG-W-FPD  157 (404)
T ss_pred             CcccEEEeCChHHHHHHHHHHh-----CCCC-----CEEEEeCCCCcChHHHHHHcCCEEEEE----ecccccC-C-CCC
Confidence            3468999999999999998877     5667     999999999976655444333221111    0000000 0 026


Q ss_pred             HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC-cccccCCCCCcE-
Q 017259          115 ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVRPDM-  192 (374)
Q Consensus       115 ~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~~~~d~-  192 (374)
                      ++++++.++   ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|.++.+.+.. .......-...+ 
T Consensus       158 ~~~l~~~~~---~~~~~v~l~~P~NPtG~~~-~~~~~~~i~~~a~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~vi  233 (404)
T PRK09265        158 LDDIRSKIT---PRTKAIVIINPNNPTGAVY-SKELLEEIVEIARQHNLIIFADEIYDKILYDGAVHISIASLAPDLLCV  233 (404)
T ss_pred             HHHHHHhcc---ccceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHCCCEEEEehhhhhccCCCCCcCCHHHcCCCceEE
Confidence            888888775   4688888888889999877 7999999999999999999999999987544422 111111111122 


Q ss_pred             --EEeccccc-CCccchhhhee--CHH----HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHH---HHHHHHHH
Q 017259          193 --VILGKALG-GGVIPVSAVLA--DKE----VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLA---ERSAHLGE  259 (374)
Q Consensus       193 --~s~sK~~~-~G~~~~G~~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~---~~~~~~~~  259 (374)
                        -||||.++ +|+ |+||+++  ++.    +.+.+... ....++.+.+++.++.+++...+. ..+.   ++++++++
T Consensus       234 ~~~S~SK~~~~pGl-RiG~~v~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~r~  311 (404)
T PRK09265        234 TFNGLSKAYRVAGF-RVGWMVLSGPKKHAKGYIEGLDML-ASMRLCANVPAQHAIQTALGGYQSINELILPGGRLYEQRD  311 (404)
T ss_pred             EEecchhhccCccc-ceEEEEEeCchHHHHHHHHHHHHH-hccccCCCcHHHHHHHHHhcCchhHHHHHHHHHHHHHHHH
Confidence              37899996 799 9999885  333    33333211 123456788888888887742111 1122   23334444


Q ss_pred             HHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCH
Q 017259          260 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISS  331 (374)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~  331 (374)
                      .+.+.|+.    ++++....+..|.++|+.++....  ..+...+.+.|.++||.+.|+.      ++++|+++  ..++
T Consensus       312 ~~~~~L~~----~~~~~~~~p~~g~~l~~~~~~~~~~~~~~~~~~~~~l~~~gv~v~pg~~F~~~~~~~~Ri~~--~~~~  385 (404)
T PRK09265        312 RAWELLNA----IPGVSCVKPKGALYAFPKLDPKVYPIHDDEQFVLDLLLQEKVLLVQGTGFNWPEPDHFRIVT--LPRV  385 (404)
T ss_pred             HHHHHHhc----CCCCcccCCCcceEEEEEecccccCCCCHHHHHHHHHHhCCEEEECchhhCCCCCCeEEEEe--CCCH
Confidence            44444433    322222223457788887764210  0134557778889999998752      57999995  4688


Q ss_pred             HHHHHHHHHHHHHHh
Q 017259          332 NELQEGSKALHDVLE  346 (374)
Q Consensus       332 e~i~~~~~~l~~~~~  346 (374)
                      +++++++++|+++++
T Consensus       386 e~l~~~l~rl~~~l~  400 (404)
T PRK09265        386 DDLEEAIGRIGRFLS  400 (404)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999999999887

>PRK14808 histidinol-phosphate aminotransferase; Provisional

Probab=99.94  E-value=4.1e-25  Score=203.73  Aligned_cols=271  Identities=14%  Similarity=0.132  Sum_probs=183.6

Q ss_pred             CCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      |+.+...+|.+.++++++     .+++++|+|+++++..++..+              ++|++.+|+|.++...+...+.
T Consensus        53 Y~~~~~~~Lr~aia~~~~~~~~~~~~i~it~Ga~~~i~~~~~~~--------------d~v~v~~P~y~~~~~~~~~~g~  118 (335)
T PRK14808         53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--------------DRSVFFPPTYSCYRIFAKAVGA  118 (335)
T ss_pred             CCCCChHHHHHHHHHHhCCCCCCcceEEEcCCHHHHHHHHHHHh--------------CcEEECCCCHHHHHHHHHHcCC
Confidence            444556777777777765     678999999999999998876              7799999999887776665543


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      +....    |...+     + .++..  .+    .+++++++.+++||+|.+. +++.+++   ++ +++++||+||+|.
T Consensus       119 ~~~~v----~~~~~-----~-~~~~~--~~----~~~~~i~i~nP~NPTG~~~-s~~~l~~---l~-~~~~~ii~DE~Y~  177 (335)
T PRK14808        119 KFLEV----PLTKD-----L-RIPEV--NV----GEGDVVFIPNPNNPTGHVF-EREEIER---IL-KTGAFVALDEAYY  177 (335)
T ss_pred             eEEEe----cCCCc-----C-CCChh--Hc----cCCCEEEEeCCCCCCCCCc-CHHHHHH---HH-hcCCEEEEECchh
Confidence            22111    11110     0 11111  12    2467888888999999988 5555544   44 5899999999999


Q ss_pred             CCcccccCcccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-
Q 017259          173 GLARSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-  247 (374)
                      +|.  +..+. ......+.   +.||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++.++++.... 
T Consensus       178 ~f~--~~~~~-~~~~~~~~vi~~~S~SK~~~l~Gl-RvG~~v~~~~~~~~l~~~~--~~~~~~~~~q~a~~~~l~~~~~~  251 (335)
T PRK14808        178 EFH--GESYV-DLLKKYENLAVIRTFSKAFSLAAQ-RIGYVVSSEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIF  251 (335)
T ss_pred             hhc--CCchH-HHHHhCCCEEEEEechhhccCccc-ceEEEEeCHHHHHHHHHhc--CCCCCCHHHHHHHHHHHhCHHHH
Confidence            873  21111 11111123   338999999 899 9999999999988886533  3467788888888777763211 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPL  327 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~  327 (374)
                      .+..+.++++++++.+.|+..     +. ...++.|.|+|+.++..    +..++.++|.++||.++.. .+++||+   
T Consensus       252 ~~~~~~~~~~r~~l~~~L~~~-----g~-~~~~~~g~f~~~~l~~~----~~~~~~~~l~~~Gi~V~~~-~~~~Ris---  317 (335)
T PRK14808        252 EERTKFIVEERERMKSALREM-----GY-RITDSRGNFVFIFMEKE----EKERLLEHLRAKNIAVRSF-REGVRIT---  317 (335)
T ss_pred             HHHHHHHHHHHHHHHHHHHHC-----CC-EECCCCCeEEEEeCCCc----cHHHHHHHHHHCCeEEEEC-CCCeEEe---
Confidence            122333444444444444433     22 22345788999888743    4578999999999999976 5789999   


Q ss_pred             CCCHHHHHHHHHHHHH
Q 017259          328 SISSNELQEGSKALHD  343 (374)
Q Consensus       328 ~~~~e~i~~~~~~l~~  343 (374)
                      ..+.++.++++++|++
T Consensus       318 i~~~~~~~~~~~~l~~  333 (335)
T PRK14808        318 IGKREENDMILKELEV  333 (335)
T ss_pred             cCCHHHHHHHHHHHHh
Confidence            5678999999998864

>PF00155 Aminotran_1_2: Aminotransferase class I and II 1-aminocyclopropane-1-carboxylate synthase signature aspartate aminotransferase signature; InterPro: IPR004839 Aminotransferases share certain mechanistic features with other pyridoxal-phosphate dependent enzymes, such as the covalent binding of the pyridoxal-phosphate group to a lysine residue

Probab=99.94  E-value=6e-25  Score=205.55  Aligned_cols=286  Identities=22%  Similarity=0.274  Sum_probs=196.7

Q ss_pred             CCcHHHHHHHHhcccC--------CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259           20 NDKFPVFAERLTSMFG--------YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~--------~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~   90 (374)
                      .....++++.++++++        .+ ++++++|..+++..++.++.    ..+|     ++|++..|+|.+....+...
T Consensus        43 ~~g~~~lr~~ia~~~~~~~~~~~~~~~~i~~~~G~~~~~~~~~~~~~----~~~~-----~~vlv~~P~y~~~~~~~~~~  113 (363)
T PF00155_consen   43 PQGYPELREAIADFLGRRYGVPVDPEANILVTSGAQAALFLLLRLLK----INPG-----DTVLVPDPCYPSYIEAARLL  113 (363)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTHHTTGGEGEEEESHHHHHHHHHHHHHH----SSTT-----SEEEEEESSSTHHHHHHHHT
T ss_pred             chhhHHHHHHHHHHhhhccCcccccceEEEEecccccchhhhhhccc----cccc-----ccceecCCcccccccccccc
Confidence            3447888899988776        66 78888777777776666663    3456     99999999997766555544


Q ss_pred             cCCccccccCCCCCCCceecc-------CCCHHHHHHHHHhcC-C--cEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           91 SCDNEAIRGFGPLLPGHLKVD-------FGDITALEKIFKESG-D--QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~-------~~d~~~le~~l~~~~-~--~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +..             +..++       ..|+++|++.+++.+ +  +++++++++++||+|... +.+.+++|+++|++
T Consensus       114 g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~p~nPtG~~~-~~~~l~~l~~~~~~  179 (363)
T PF00155_consen  114 GAE-------------VIPVPLDSENDFHLDPEALEEALDELPSKGPRPKAVLICNPNNPTGSVL-SLEELRELAELARE  179 (363)
T ss_dssp             TSE-------------EEEEEEEETTTTEETHHHHHHHHHTSHTTTETEEEEEEESSBTTTTBB---HHHHHHHHHHHHH
T ss_pred             Cce-------------eeeccccccccccccccccccccccccccccccceeeeccccccccccc-ccccccchhhhhcc
Confidence            322             12222       128999999999631 2  468888988999999877 89999999999999


Q ss_pred             cCCEEEEeccccCCcccccCc-c-cccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHH
Q 017259          161 YNILMIADEIQSGLARSGRML-A-SDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~-~-~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      ||++||+||+|.++......+ . .......++   +.|+||.++ .|+ |+||+++++++.+.++....  .+..+.+.
T Consensus       180 ~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~g~~Gl-RvG~i~~~~~~~~~l~~~~~--~~~~~~~~  256 (363)
T PF00155_consen  180 YNIIIIVDEAYSDLIFGDPDFGPIRSLLDEDDNVIVVGSLSKSFGLPGL-RVGYIVAPPELIERLRRFQR--SGLSSSPM  256 (363)
T ss_dssp             TTSEEEEEETTTTGBSSSSHTHHHHGHHTTTSTEEEEEESTTTTTSGGG-TEEEEEEEHHHHHHHHHHHH--HTTSSHHH
T ss_pred             cccceeeeeceeccccCCCccCcccccccccccceeeeecccccccccc-ccccccchhhhhhhhhhccc--cccccchh
Confidence            999999999999764432211 1 111222333   338999998 799 99999999988888875332  22227777


Q ss_pred             HHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          235 SAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       235 ~~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      +.++.+.+.....     ++..++++++.+++.+.|++.     +........+.++|..++..    +..+++++|+++
T Consensus       257 ~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~-----~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~  327 (363)
T PF00155_consen  257 QAAAAAALSDPELVEKWLEELRERLRENRDLLREALEEI-----GITVLPPEAGFFLWVRLDPN----DAEELAQELLEE  327 (363)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TSEEEHHSBSSEEEEEESHH----HHHHHHHHHHHH
T ss_pred             hHHHHHhhhcccccccccccchhhHHHHHHHHHHHHHHh-----hhheeeccCccEEEEEcccc----hHHHHHHHHHHh
Confidence            7776666655432     123344444444444444433     23322233566667666543    568999999998


Q ss_pred             -CeEeccC----CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          310 -GILAKPT----HDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       310 -Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                       ||.+.|+    ..+++|+++ ...+++++++++++|
T Consensus       328 ~gi~v~pg~~~~~~~~iRi~~-a~~~~e~~~~~~~~l  363 (363)
T PF00155_consen  328 YGILVRPGSYFGVPGYIRISL-ASHSEEDLEEALERL  363 (363)
T ss_dssp             HTEEEEEGGGGTSTTEEEEEG-GCSCHHHHHHHHHHH
T ss_pred             CCEEEEecCCCCCCCEEEEEe-ccCCHHHHHHHHhhC
Confidence             9999884    378999996 578999999999886

On the basis of sequence similarity, these various enzymes can be grouped [] into class I and class II. This entry includes proteins from both subfamilies.; GO: 0016769 transferase activity, transferring nitrogenous groups, 0030170 pyridoxal phosphate binding, 0009058 biosynthetic process; PDB: 3NRA_B 3P6K_B 3OP7_A 3ASB_A 3ASA_A 1W7M_A 3FVX_A 1W7N_A 3FVU_B 3FVS_A ....

>PRK10874 cysteine sulfinate desulfinase; Provisional

Probab=99.94  E-value=3.6e-24  Score=202.81  Aligned_cols=296  Identities=14%  Similarity=0.136  Sum_probs=197.2

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +.++++++.+++++|.   +++++++|++++++.++..+.... .++|     |+|++.++.|++.......+....+..
T Consensus        63 ~~~~~~r~~la~~~g~~~~~~i~~~~~~t~~i~~~~~~~~~~~-~~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g~~  136 (401)
T PRK10874         63 ARYEAAREQVAQLLNAPDAKNIVWTRGTTESINLVAQSYARPR-LQPG-----DEIIVSEAEHHANLVPWLMVAQQTGAK  136 (401)
T ss_pred             HHHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHhhhcc-CCCc-----CEEEECCcchHHHHHHHHHHHHHhCCE
Confidence            3466788899998875   479999999999999988873211 3567     999999999876432221111100111


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ....+...+.    ..|++++++.++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+ ++..
T Consensus       137 v~~v~~~~~~----~~d~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~i~~l~~~~g~~~ivD~a~~-~g~~  204 (401)
T PRK10874        137 VVKLPLGADR----LPDVDLLPELIT---PRTRILALGQMSNVTGGCPD----LARAITLAHQAGMVVMVDGAQG-AVHF  204 (401)
T ss_pred             EEEEecCCCC----cCCHHHHHHhcC---cCcEEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEECCcc-cccc
Confidence            0000110000    127899998886   57899999999999999998    9999999999999999999996 2111


Q ss_pred             ccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHhhcCCCCCC------------------C---CCCCCHHH
Q 017259          178 GRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVMLCIQPGEHG------------------S---TFGGNPLA  234 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~------------------~---~~~~~~~~  234 (374)
                          ..+...+.+|+.++  +|.++ .. ++|+++.++++.+.+.+...+                  .   ..+.+..+
T Consensus       205 ----~~~~~~~~~d~~~~s~~K~~g-p~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~Gt~~~~~  278 (401)
T PRK10874        205 ----PADVQALDIDFYAFSGHKLYG-PT-GIGVLYGKSELLEAMSPWQGGGKMLTEVSFDGFTPQSAPWRFEAGTPNVAG  278 (401)
T ss_pred             ----cCCchhcCCCEEEEecccccC-CC-ccEEEEEchHHHhcCCCeecCCcceEeeccCccCCCCChhhccCCCcCHHH
Confidence                11222344676654  49654 33 568888998888776543211                  0   11346667


Q ss_pred             HHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          235 SAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       235 ~~aa~~al~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      ..+..++++.+.+.+   ..++.+...+++.+.|++    +|++.....+.+.++.|.++..    +..++.+.|.++||
T Consensus       279 ~~al~~al~~l~~~g~~~~~~~~~~l~~~l~~~l~~----~~g~~~~~~~~~~i~~~~~~~~----~~~~~~~~L~~~gI  350 (401)
T PRK10874        279 VIGLSAALEWLADIDINQAESWSRSLATLAEDALAK----LPGFRSFRCQDSSLLAFDFAGV----HHSDLVTLLAEYGI  350 (401)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCCCCCcEEEEEECCc----CHHHHHHHHHHCCc
Confidence            777888887765443   344444455555555443    3333221122345666666543    56789999999999


Q ss_pred             EeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          312 LAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       312 ~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++++.            .+++|++++..+|++|+++++++|+++++ .+
T Consensus       351 ~v~~g~~~~~~~~~~~g~~~~iRiS~~~~nt~edid~ll~al~~~~~-~~  399 (401)
T PRK10874        351 ALRAGQHCAQPLLAALGVTGTLRASFAPYNTQSDVDALVNAVDRALE-LL  399 (401)
T ss_pred             EEeccccchHHHHHHhCCCCEEEEEecccCCHHHHHHHHHHHHHHHH-Hh
Confidence            998742            47899999999999999999999999887 54

>PRK07392 threonine-phosphate decarboxylase; Validated

Probab=99.93  E-value=3.4e-24  Score=199.95  Aligned_cols=290  Identities=18%  Similarity=0.157  Sum_probs=185.3

Q ss_pred             CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+|.+.+++++  ..+++++|+|+++++..+++++     . +|     +.|++.+|+|.++...+...+....
T Consensus        54 Y~~~~~~~Lr~aia~~~~v~~~~I~it~G~~~~i~~~~~~l-----~-~g-----~~vlv~~P~y~~~~~~~~~~g~~~~  122 (360)
T PRK07392         54 YPDPDYRELRLALAQHHQLPPEWILPGNGAAELLTWAGREL-----A-QL-----RAVYLITPAFGDYRRALRAFGATVK  122 (360)
T ss_pred             CCCcCHHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHHHh-----C-CC-----CeEEEECCCcHHHHHHHHHcCCeEE
Confidence            33344567888888876  5568999999999999888765     2 35     7999999999887666555443211


Q ss_pred             ccccCCCCCCCcee-ccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLK-VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    +...+... ....+++++++.   . ++++++++.+++||+|.+.+    .++|.++++++++ +|+||+|.+|
T Consensus       123 ~v----~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~l~nP~NPTG~~~~----~~~l~~l~~~~~~-~IiDE~y~~~  189 (360)
T PRK07392        123 EL----PLPLDQPSPGLTLRLQTLPPQ---L-TPNDGLLLNNPHNPTGKLWS----REAILPLLEQFAL-VVVDEAFMDF  189 (360)
T ss_pred             EE----ecccccCCcccccCHHHHHHh---c-cCCCEEEEeCCCCCCCCCcC----HHHHHHHHHHCCE-EEEECchhhh
Confidence            11    11000000 001134444332   2 36788888889999999886    6677888888986 6669999988


Q ss_pred             cccccCcc-cccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          175 ARSGRMLA-SDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       175 ~~~g~~~~-~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      .+.+.... .......+.+   -||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++.++++.   ..
T Consensus       190 ~~~~~~~s~~~~~~~~~~vi~i~S~SK~~~l~Gl-RiG~~v~~~~~~~~~~~~~--~~~~~s~~~q~~~~~~l~~---~~  263 (360)
T PRK07392        190 LPPDAEQSLIPCLAEYPNLIILRSLTKFYSLPGL-RLGYAIAHPDRLQRWQQWR--DPWPVNGLAAAAAIAALAD---RD  263 (360)
T ss_pred             ccCccccchHHHhhcCCCEEEEEechhhhcCCch-heeeeeCCHHHHHHHHhhC--CCCCCCHHHHHHHHHHhcc---HH
Confidence            55442211 1111222333   38999999 899 9999999998888876432  3467889999888888763   23


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------CCEEE
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------DTIVR  322 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~~~lR  322 (374)
                      +.++.++..+..++.+.+....++++. ...+.++|+|+.++.     +..++++.++ ++||.+.++.      .+++|
T Consensus       264 ~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~~~fl~~~~~~-----~~~~l~~~ll~~~gv~v~pg~~f~~~~~~~iR  337 (360)
T PRK07392        264 FQQQTWAWLPPAREALFQGLASLPGLT-PLPSAANFLLVQSQG-----SALQLQEKLLQQHRILIRDCLSFPELGDRYFR  337 (360)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCcE-ECCCCCCEEEEEcCC-----CHHHHHHHHHhhCCEEEEeCCCCCCCCCCEEE
Confidence            444333333333333333333333322 233457777776653     4678888865 5799998863      47999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+   ..+.++.+++.+.|++++.
T Consensus       338 i~---~~~~~~~~~l~~al~~~~~  358 (360)
T PRK07392        338 VA---VRTEAENQRLLEALAAILA  358 (360)
T ss_pred             EE---eCCHHHHHHHHHHHHHHhh
Confidence            99   3345566777777776654

>TIGR03301 PhnW-AepZ 2-aminoethylphosphonate aminotransferase

Probab=99.93  E-value=4.8e-24  Score=198.83  Aligned_cols=313  Identities=16%  Similarity=0.149  Sum_probs=203.7

Q ss_pred             hHHHHHHHhc-cccCcCCCCCcHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKL-TLSSRAFYNDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~-~~~~~~~~~~~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++... .+..+.+ .+.++++++.+++++|.+    .+++++||+++++.++..+     ..+|     +++++.
T Consensus        12 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~~la~~~~~~~~~~~i~~~~~gt~~l~~~~~~~-----~~~~-----~~vi~~   80 (355)
T TIGR03301        12 ATVRDAMLVDWCHWDSEF-NDVTDQVRDRLLALAGGDDNHTCVLLQGSGTFAVEATIGSL-----VPRD-----GKLLVL   80 (355)
T ss_pred             HHHHHHhhhhccCCCHHH-HHHHHHHHHHHHHHhcCCCCCcEEEEeCCcHHHHHHHHHhc-----cCCC-----CeEEEE
Confidence            3455555442 2211122 467888999999988754    5778999999999999887     3444     666666


Q ss_pred             ccCCCCccc-ccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTL-AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .+.+++... ......+......   +...+    ...|+++++++++++ ++++.+++.++++++|.+.+    +++|.
T Consensus        81 ~~~~~~~~~~~~a~~~g~~~~~i---~~~~~----~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~~G~~~~----~~~i~  148 (355)
T TIGR03301        81 INGAYGERLAKICEYLGIPHTDL---NFSEY----EPPDLNRIEEALAAD-PDITHVATVHHETTTGILNP----LEAIA  148 (355)
T ss_pred             CCCchhhHHHHHHHHcCCceEEE---ecCCC----CCCCHHHHHHHHHhC-CCceEEEEEecCCcccchhH----HHHHH
Confidence            665555421 1111111111100   00000    012789999998764 45667777677788898887    99999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCC------------
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------------  223 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------  223 (374)
                      ++|++||+++|+|++++ ++.  .++....++.+.-+.+++|+++|+. ++|++++++++++.+....            
T Consensus       149 ~l~~~~~~~livD~~~s-~g~--~~~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  224 (355)
T TIGR03301       149 KVARSHGAVLIVDAMSS-FGA--IPIDIEELDVDALIASANKCLEGVP-GFGFVIARRDLLEASAGNARSLYLDLYDQWA  224 (355)
T ss_pred             HHHHHcCCEEEEEeccc-cCC--cccchhhcCccEEEecCCcccccCC-ceeEEEECHHHHHHhhCCCCCceeeHHHHHH
Confidence            99999999999999876 321  2222232333222347789998766 7799999998887765210            


Q ss_pred             -----CCCCCCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccC
Q 017259          224 -----HGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKT  293 (374)
Q Consensus       224 -----~~~~~~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~  293 (374)
                           ....+..+...+.++.++++.+.++    +..++++++.+++.+.|+++...   .... ....+.++++.++..
T Consensus       225 ~~~~~~~~~~t~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~~~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~  301 (355)
T TIGR03301       225 YMEKTGKWRFTPPTHTVYAFAQALEELEAEGGVPARIARYRRNRELLVDGLRALGFQ---PLLPERWQSPIIVSFLYPDD  301 (355)
T ss_pred             HhhhcCCCCCCCcHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcCCe---eecCCCCCCCcEEEEECCCC
Confidence                 1124566778888888888877543    34556677777777777664211   1111 123355667766542


Q ss_pred             CCchhHHHHHHHHHHCCeEeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          294 ALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       294 ~~~~~~~~~~~~l~~~Gi~v~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      . ..+..++.+.|.++||.+.++.   .+++||+++..+++++++++++.|++++
T Consensus       302 ~-~~~~~~~~~~l~~~gi~i~~~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~  355 (355)
T TIGR03301       302 P-DFDFDDFYQELKERGFVIYPGKLTLADTFRIGTIGEIDAADIERLLEAIKDAL  355 (355)
T ss_pred             C-cchHHHHHHHHHHCCEEEECCccccccEEEEecCCCCCHHHHHHHHHHHHhhC
Confidence            1 0145789999999999998874   3799999877889999999999998753

This family includes a number of 2-aminoethylphosphonate aminotransferases, some of which are indicated to operate in the catabolism of 2-aminoethylphosphonate (AEP) and others which are involved in the biosynthesis of the same compound. The catabolic enzyme (PhnW, ) is known to use pyruvate:alanine as the transfer partner and is modeled by the equivalog-level alignment (TIGR02326). The PhnW family is apparently a branch of a larger tree including genes (AepZ) adjacent to others responsible for the biosynthesis of phosphonoacetaldehyde. The identity of the transfer partner is unknown for these enzymes and considering the reversed flux compared to PhnW, it may very well be different.

>COG0520 csdA Selenocysteine lyase/Cysteine desulfurase [Posttranslational modification, protein turnover, chaperones]

Probab=99.93  E-value=1.6e-24  Score=201.93  Aligned_cols=290  Identities=19%  Similarity=0.229  Sum_probs=214.5

Q ss_pred             CCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ...+++.++.++++.+.   ++|+||+|.|++++.+...+...  .++|     |+|++.+-.||+....+..+....+.
T Consensus        65 t~~~e~aRe~va~~~~a~~~~eIvft~~tT~aln~va~~l~~~--~~~g-----deIv~s~~EH~sn~~pw~~~~~~~Ga  137 (405)
T COG0520          65 TDLYEAAREAVARFLNADSSDEIVFTRGTTEALNLVARGLGRS--LKPG-----DEIVVSDLEHHSNIVPWQELAKRTGA  137 (405)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEeCChhHHHHHHHHHhhhh--hcCC-----CEEEEccCcchhhHHHHHHHHHhcCc
Confidence            44677888889988853   56999999999999988877422  3455     99999999999987777766643222


Q ss_pred             cccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .         +..++.+     +.+++++.++   ++|+++.++.++|.+|.+.|    +++|.++||++|+++++|.+|
T Consensus       138 ~---------v~~i~~~~~g~~~~~~~~~~i~---~~Tklvais~vSn~tG~~~p----v~~I~~la~~~ga~v~VDaaq  201 (405)
T COG0520         138 K---------VRVIPLDDDGLLDLDALEKLIT---PKTKLVALSHVSNVTGTVNP----VKEIAELAHEHGALVLVDAAQ  201 (405)
T ss_pred             E---------EEEEecCCCCCcCHHHHHHhcC---CCceEEEEECccccccccch----HHHHHHHHHHcCCEEEEECcc
Confidence            2         2233322     5788888666   78999999999999999999    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCC------------CCC---------
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG------------STF---------  228 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~------------~~~---------  228 (374)
                      + .+    ....+...+..|+..||  |++.|+. ++|.+.+++++.+.+.+...+            .++         
T Consensus       202 ~-~~----h~~idv~~l~~Df~afsgHKwl~gP~-GiGvLy~r~~~l~~l~P~~~gg~~~~~~~~~~~~~~~~~p~rfe~  275 (405)
T COG0520         202 A-AG----HLPIDVQELGCDFLAFSGHKWLLGPT-GIGVLYVRKELLEELEPFLGGGGMIEYVSRDEGVTLAELPLRFEA  275 (405)
T ss_pred             c-cC----ccCCCchhcCCCEEEEcccccccCCC-ceEEEEEchHHHhhcCCcccCCCceeeecccccccccCcchhhcc
Confidence            7 21    12334455678999888  9888776 889999999999988654211            111         


Q ss_pred             -CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEE--EEeeeEEEEeccCCCchhHHH
Q 017259          229 -GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-EVR--GRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       229 -~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~--~~g~~~~~~~~~~~~~~~~~~  301 (374)
                       .++.....+..++++.++..   ++.++.+.+.+++.+.|+++    |++.. ...  .+..++.|.++..    ...+
T Consensus       276 gTpn~~~~i~l~aAl~~~~~ig~~~i~~~e~~L~~~~~~~L~~~----~~v~i~g~~~~~r~~~vsF~v~~~----~~~d  347 (405)
T COG0520         276 GTPNIAGAIGLAAALDYLLEIGMEAIEAHERELTEYLLEGLSEL----PGVEIYGPPDADRGGIVSFNVKGI----HPHD  347 (405)
T ss_pred             CCchHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCcccCceEEEEEeCCC----CHHH
Confidence             22444555556666665543   45566666666666666554    22221 122  3677888888765    6899


Q ss_pred             HHHHHHHCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          302 ICLKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++..|.++||.++.++            ...+|+|+++.+|++|++++++.|+++.+
T Consensus       348 v~~~L~~~gI~vr~g~~ca~p~~~~~~~~~~iR~S~~~YNt~edid~l~~aL~~~~~  404 (405)
T COG0520         348 VATLLDEKGIAVRAGHHCAQPLHRLLGVDATIRASLHLYNTEEDVDRLLEALKKALA  404 (405)
T ss_pred             HHHHHHhCCeEEEeccccccHHHHhcCCCCceEEEEeecCCHHHHHHHHHHHHHHhh
Confidence            9999999999888763            23399999999999999999999998753

>PRK04635 histidinol-phosphate aminotransferase; Provisional

Probab=99.93  E-value=1.8e-24  Score=201.32  Aligned_cols=283  Identities=14%  Similarity=0.175  Sum_probs=187.7

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.....+|.+.+++++|  .+++++|+|+++++..++.++.     ++|    .|+|++..|+|..+...+...+....
T Consensus        57 Yp~~~~~~Lr~aia~~~~~~~~~I~it~Gs~~~i~~~~~~~~-----~~g----~d~vlv~~P~y~~y~~~~~~~g~~v~  127 (354)
T PRK04635         57 YPECQPPELINAYSAYAGVAPEQILTSRGADEAIELLIRAFC-----EPG----QDSIACFGPTYGMYAISAETFNVGVK  127 (354)
T ss_pred             CCCCCHHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHHhc-----CCC----CCeEEEcCCChHHHHHHHHHcCCEEE
Confidence            555567889999999885  4589999999999999998873     333    27899999999765443333222111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    |...+..    .|++.++ .+    ++++++++++++||+|.+. +.+.+++|.+.|+  +++||+||+|.+|.
T Consensus       128 ~v----~~~~~~~----~~~~~l~-~~----~~~~li~i~nP~NPTG~~~-~~~~l~~l~~~~~--~~~vivDeay~~~~  191 (354)
T PRK04635        128 AL----PLTADYQ----LPLDYIE-QL----DGAKLVFICNPNNPTGTVI-DRADIEQLIEMTP--DAIVVVDEAYIEFC  191 (354)
T ss_pred             EE----ecCCCCC----CCHHHHH-hc----cCCCEEEEeCCCCCCCccC-CHHHHHHHHHhCC--CcEEEEeCchHhhc
Confidence            10    1111100    1566665 22    3788999999999999988 5666666666554  59999999998774


Q ss_pred             ccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---
Q 017259          176 RSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---  248 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---  248 (374)
                      ....  ........+++   -||||.++ +|+ |+||+++++++.+.+...  ...++.+.+.+.++.++++....+   
T Consensus       192 ~~~s--~~~~~~~~~~~iv~~S~SK~~~l~Gl-RlG~~i~~~~~~~~l~~~--~~~~~~~~~~~~~a~~~l~~~~~~~~~  266 (354)
T PRK04635        192 PEYS--VADLLASYPNLVVLRTLSKAFALAGA-RCGFTLANEELIEILMRV--IAPYPVPLPVSEIATQALSEAGLARMK  266 (354)
T ss_pred             cCcc--hHHHHhhCCCEEEEechHHHhhhhHH-HHhhhhCCHHHHHHHHhh--cCCCCCCHHHHHHHHHHHhcccHHHHH
Confidence            2211  11111222333   38999998 899 999999999988887642  234666777777777777531111   


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEe
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLT  324 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~  324 (374)
                      +..+.++++++++.+.|+++    +. +...++.|.|+|+.++      +..++.+.|.++||.++...    ++++||+
T Consensus       267 ~~~~~~~~~r~~l~~~L~~~----~~-~~~~~~~g~f~~~~~~------~~~~~~~~l~~~gv~v~~~~~~~~~~~lRis  335 (354)
T PRK04635        267 FQVLDLNAQGARLQAALSMY----GG-AKVLEGNGNYVLAKFD------DVDAVFKALWDAGIVARAYKDPRLANCIRFS  335 (354)
T ss_pred             HHHHHHHHHHHHHHHHHHhC----CC-ceECCCCCcEEEEECC------CHHHHHHHHHHCCEEEEECCCCCCCCeEEEE
Confidence            22334444555555555543    21 2223345778887765      35678889999999997653    5799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHH
Q 017259          325 PPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       325 ~~~~~~~e~i~~~~~~l~~~  344 (374)
                         ..+.+++++++++|++.
T Consensus       336 ---~~~~e~~~~l~~al~~~  352 (354)
T PRK04635        336 ---FSNRAETDKLIGLIRNQ  352 (354)
T ss_pred             ---eCCHHHHHHHHHHHHHh
Confidence               45889999999998754

>PRK09257 aromatic amino acid aminotransferase; Provisional

Probab=99.93  E-value=3.8e-24  Score=202.15  Aligned_cols=299  Identities=13%  Similarity=0.099  Sum_probs=185.7

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..++++.+++++.+..    ..+++  ++|+|+++|+..+++++..   ..+|     |+|++.+|+|.++...+...+
T Consensus        70 G~~~lR~aia~~~~~~~~~~~~~~~i~v~iT~Ga~~al~~~~~~l~~---~~pG-----d~Vlv~~P~y~~~~~~~~~~g  141 (396)
T PRK09257         70 GLAAYRQAVQELLFGADSPALAAGRVATVQTPGGTGALRVGADFLKR---AFPD-----AKVWVSDPTWPNHRAIFEAAG  141 (396)
T ss_pred             CCHHHHHHHHHHhcCCCCcccccCeEEEEecCCccHHHHHHHHHHHH---hCCC-----CeEEECCCCcccHHHHHHHcC
Confidence            33444555555554433    34566  9999999999999876631   3577     999999999988877666554


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..........   .+..   -.|++++++++++++++++++++.+++||||.+. +++.+++|+++|++||++||+||+|
T Consensus       142 ~~~v~v~~~~---~~~~---~~d~~~l~~~~~~~~~~~~~~i~~~p~NPTG~~~-s~~~~~~l~~~a~~~~~~ii~De~Y  214 (396)
T PRK09257        142 LEVKTYPYYD---AATK---GLDFDAMLADLSQAPAGDVVLLHGCCHNPTGADL-TPEQWDELAELLKERGLIPFLDIAY  214 (396)
T ss_pred             CcEEEEeccc---cccC---ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEeccc
Confidence            4322111000   0000   0278999988876545567777788899999877 8999999999999999999999999


Q ss_pred             cCCccc-cc-Cccc-ccCCCCCc---EEEecccccC-Cccchhhhee---CHH----HHhhcCCCCCCCCCCCCHHHHHH
Q 017259          172 SGLARS-GR-MLAS-DWEEVRPD---MVILGKALGG-GVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASAV  237 (374)
Q Consensus       172 ~~~~~~-g~-~~~~-~~~~~~~d---~~s~sK~~~~-G~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~a  237 (374)
                      .++.+. +. .... ...+..++   +.||||.++. |+ |+||+++   +++    +...+.........+.+.+++.+
T Consensus       215 ~~l~~~~~~~~~~~~~~~~~~~~vi~i~SfSK~~~~~Gl-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~  293 (396)
T PRK09257        215 QGFGDGLEEDAYGLRAFAAAGLELLVASSFSKNFGLYGE-RVGALSVVAEDAEEADRVLSQLKATIRTNYSNPPAHGAAI  293 (396)
T ss_pred             cccccchHHHHHHHHHHHhcCCcEEEEEEcCCcCccccc-cceeEEEEeCCHHHHHHHHHHHHHHhhhhcCCCcHHHHHH
Confidence            987542 11 1111 11111222   3499999995 99 9999863   333    33333322222333457777776


Q ss_pred             HHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          238 AIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       238 a~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      +...++...      .  ++.+++++++++.+.+.|++.... .......+..|.++|+.++       ...+.+.+.++
T Consensus       294 ~~~~l~~~~~~~~~~~~~~~~r~~~~~rr~~l~~~L~~~~~~-~~~~~~~p~gg~~~w~~l~-------~~~~~~l~~~~  365 (396)
T PRK09257        294 VATILNDPELRAEWEAELEEMRERIKAMRQLLVEALKAKGPS-RDFDFIARQRGMFSYSGLT-------PEQVDRLREEF  365 (396)
T ss_pred             HHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCcccccccceEEEecCCC-------HHHHHHHHHcC
Confidence            666654211      0  123445555555555555544210 0011122345677776542       23334444567


Q ss_pred             CeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          310 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       310 Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ||.+.|.+    ||+++ ..+++++++++++|++++
T Consensus       366 ~V~~~p~~----ri~~~-~~~~~~i~~~~~~i~~~~  396 (396)
T PRK09257        366 GVYAVGSG----RINVA-GLNESNIDYVAEAIAAVL  396 (396)
T ss_pred             CEEEcCCC----eEEEe-eCCHHHHHHHHHHHHhhC
Confidence            99998752    99853 378999999999998753

>cd00609 AAT_like Aspartate aminotransferase family

Probab=99.93  E-value=4.9e-24  Score=198.11  Aligned_cols=289  Identities=19%  Similarity=0.231  Sum_probs=201.0

Q ss_pred             CCCCCcHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259           17 AFYNDKFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +.+.+...++++.+++++    +    .+++++++|+++++..++..+     .++|     ++|++..++|++....+.
T Consensus        32 ~~~~~~~~~l~~~l~~~l~~~~~~~~~~~~~~~~~~~t~a~~~~~~~~-----~~~g-----~~vl~~~~~~~~~~~~~~  101 (350)
T cd00609          32 YYPDPGLPELREAIAEWLGRRGGVDVPPEEIVVTNGAQEALSLLLRAL-----LNPG-----DEVLVPDPTYPGYEAAAR  101 (350)
T ss_pred             CCCCCCcHHHHHHHHHHHHHHhCCCCCcceEEEecCcHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHH
Confidence            344556666666666655    2    558999999999999999888     4556     999999999877655544


Q ss_pred             cccCCccccccCCCCCCCceeccCC-----C--HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDFG-----D--ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~-----d--~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      .....             +..++.+     +  .+.+++...   +++++++++++++++|.+. +.+.+++|.++|+++
T Consensus       102 ~~~~~-------------~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~v~i~~~~~~tG~~~-~~~~l~~l~~~~~~~  164 (350)
T cd00609         102 LAGAE-------------VVPVPLDEEGGFLLDLELLEAAKT---PKTKLLYLNNPNNPTGAVL-SEEELEELAELAKKH  164 (350)
T ss_pred             HCCCE-------------EEEEecccccCCccCHHHHHhhcC---ccceEEEEECCCCCCCccc-CHHHHHHHHHHHHhC
Confidence            33211             1111111     1  244444332   6789999999888899776 688899999999999


Q ss_pred             CCEEEEeccccCCcccccCcc--cccCCCCCcE--EEeccccc-CCccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLA--SDWEEVRPDM--VILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLAS  235 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~--~~~~~~~~d~--~s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~  235 (374)
                      |+++|+|++|+++...+....  ........++  .|++|.++ +|. ++|+++.++ ++.+.+.......++..+..++
T Consensus       165 ~~~~ivD~a~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~K~~~~~g~-~~G~i~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (350)
T cd00609         165 GILIISDEAYAELVYDGEPPPALALLDAYERVIVLRSFSKTFGLPGL-RIGYLIAPPEELLERLKKLLPYTTSGPSTLSQ  243 (350)
T ss_pred             CeEEEEecchhhceeCCcccccccCcCccCcEEEEeecccccCCccc-ceEEEecCHHHHHHHHHHHHHhcccCCChHHH
Confidence            999999999997654443321  1111112233  38899999 788 999999988 7888887655555677788888


Q ss_pred             HHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          236 AVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       236 ~aa~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      .++..+++...  .+...++++++.+++.+.|+.....    .......+.++++.++...   ....+.+.|.+.||.+
T Consensus       244 ~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~----~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~gi~i  316 (350)
T cd00609         244 AAAAAALDDGEEHLEELRERYRRRRDALLEALKELGPL----VVVKPSGGFFLWLDLPEGD---DEEFLERLLLEAGVVV  316 (350)
T ss_pred             HHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHhcCCc----cccCCCccEEEEEecCCCC---hHHHHHHHHHhCCEEE
Confidence            88888877652  2344556666666666666554221    1123455778887776542   4556677777789999


Q ss_pred             ccC------CCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          314 KPT------HDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       314 ~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      .+.      ...++|++++..  ++|+++++++|+
T Consensus       317 ~~~~~~~~~~~~~iRi~~~~~--~~~i~~~~~al~  349 (350)
T cd00609         317 RPGSAFGEGGEGFVRLSFATP--EEELEEALERLA  349 (350)
T ss_pred             ecccccccCCCCeEEEEeeCC--HHHHHHHHHHhh
Confidence            876      568999998766  999999999885

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Pyridoxal phosphate combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary hi

>TIGR03801 asp_4_decarbox aspartate 4-decarboxylase

Probab=99.93  E-value=5.2e-24  Score=203.19  Aligned_cols=290  Identities=13%  Similarity=0.182  Sum_probs=176.8

Q ss_pred             eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc-ccccCCCCCCC-ceeccCCCH
Q 017259           38 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-AIRGFGPLLPG-HLKVDFGDI  115 (374)
Q Consensus        38 ~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~-~~~~~~~d~  115 (374)
                      ++++|+|+++|+..++.++.......+|     |+|++..|+|..+...+........ ......+...+ ..... .|.
T Consensus       157 ~V~it~Gat~al~~~~~~l~~~~ll~pG-----D~Vlv~~P~y~~y~~~~~l~~~g~~vv~i~~~~~~~~g~~~~~-~d~  230 (521)
T TIGR03801       157 DLFAVEGGTAAMCYIFDSLKANELLKKG-----DKIALMTPIFTPYLEIPELPRYDFEVVRIKADEMTEDGTHTWQ-YPD  230 (521)
T ss_pred             eEEEeCCHHHHHHHHHHHHhHhhcCCCC-----CEEEEeCCCcHHHHHHHHHhcCCcEEEEeecccccccccccCC-CCH
Confidence            7999999999999998874322236788     9999999999776554333211111 11000000000 00011 167


Q ss_pred             HHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEeccccCCcccccCcccccCCCCC-c-
Q 017259          116 TALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSGRMLASDWEEVRP-D-  191 (374)
Q Consensus       116 ~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea~~~~~~~g~~~~~~~~~~~~-d-  191 (374)
                      ++++++++   ++++++++++++||+|.+. +++.+++|.++|++|  |++||+||+|..|...  ..+.  ....+ . 
T Consensus       231 ~~l~~~~~---~~~kai~l~nP~NPTG~vl-s~e~l~~I~~ia~~~~~~l~II~DEvY~~f~~~--~~sl--~~~~~~~v  302 (521)
T TIGR03801       231 KELEKLRD---PSIKALFVVNPSNPPSVAM-SDESIEKIVDIVANDRPDLMILTDDVYGTFVDD--FRSL--FAELPYNT  302 (521)
T ss_pred             HHHHHhcC---CCCcEEEEeCCCCCCCCCC-CHHHHHHHHHHHHhcCCCeEEEECCCchhhccc--ccch--hhhCCCCE
Confidence            88887654   5889999888899999877 899999999999987  9999999999977431  1111  11122 2 


Q ss_pred             --EEEeccccc-CCccchhhheeCHH-----HHhh--------c------------------------CCCCCCCCCCCC
Q 017259          192 --MVILGKALG-GGVIPVSAVLADKE-----VMLC--------I------------------------QPGEHGSTFGGN  231 (374)
Q Consensus       192 --~~s~sK~~~-~G~~~~G~~~~~~~-----~~~~--------~------------------------~~~~~~~~~~~~  231 (374)
                        +.||||.++ +|| |+||++++++     +++.        +                        +.....++.+.+
T Consensus       303 I~v~SfSK~fg~~G~-RlG~i~~~~~~v~d~li~~lp~~~~~~l~~ry~~~~~~p~~~~fidr~vadsr~v~~~~~~g~s  381 (521)
T TIGR03801       303 IGVYSFSKYFGATGW-RLGTIALHKDNIFDKLIAELPEEKKKELDKRYSSLTTEPRKLKFIDRLVADSRQVALNHTAGLS  381 (521)
T ss_pred             EEEEcchhhccCchh-hhhhhhcCchHHHHHHHHhccHHHHHHHhhhhccccCChhhhhhHHHHHHHHHHHHHhccCCCC
Confidence              338999998 799 9999988754     2211        1                        111233445556


Q ss_pred             HHHHH--HHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-------------
Q 017259          232 PLASA--VAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-------------  295 (374)
Q Consensus       232 ~~~~~--aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-------------  295 (374)
                      .+.|.  ++.++...+.. +.+.+..++..++.++.+-+... + .........+.|++++++....             
T Consensus       382 ~p~Q~q~al~a~~all~~~~~y~~~~~~~~~~R~~~l~~~Lg-~-~~~~~~~~g~~Y~~~di~~~~~~~~~~~f~~~l~~  459 (521)
T TIGR03801       382 TPQQVQMALFSLFALMDKENAYKAETKDICRRREKLLFRGLG-L-PLQEDPNDVAYYTLIDLEEWAEKNYGEEFSSYLKK  459 (521)
T ss_pred             cHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHhcC-C-CCcCCCCCeEEEEEeehHHHHHHhcchHHHHHHhc
Confidence            66554  32122222222 23444444333333333322211 1 1111223346777777753110             


Q ss_pred             chhHHHHHHHHHHC-CeEeccCC-----CCEEEEecCCC-CCHHHHHHHHHHHHHHHh
Q 017259          296 PVSAYDICLKMKER-GILAKPTH-----DTIVRLTPPLS-ISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ~~~~~~~~~~l~~~-Gi~v~~~~-----~~~lRi~~~~~-~~~e~i~~~~~~l~~~~~  346 (374)
                      ..+..+++.+|+++ ||.+.|+.     .+++||+  ++ .+++++.++.++|+++++
T Consensus       460 ~~~~~~~~~~L~~e~gV~v~PG~~Fg~~~~~vRis--la~l~~~~~~~~~~rl~~~~~  515 (521)
T TIGR03801       460 NYSPVDVLFRLAEETGIVLLPGGGFGGPEWSVRVS--LANLNEYDYAEIGRAIRKILD  515 (521)
T ss_pred             cCCHHHHHHHHHHhCCEEEeCchhcCCCCCeEEEE--ecCCCHHHHHHHHHHHHHHHH
Confidence            01356788888754 99998863     4689999  44 688899999999999887

This enzyme, aspartate 4-decarboxylase (EC 4.1.1.12), removes the side-chain carboxylate from L-aspartate, converting it to L-alanine plus carbon dioxide. It is a PLP-dependent enzyme, homologous to aspartate aminotransferase (EC 2.6.1.1).

>TIGR02326 transamin_PhnW 2-aminoethylphosphonate--pyruvate transaminase

Probab=99.93  E-value=1.7e-23  Score=195.65  Aligned_cols=291  Identities=15%  Similarity=0.153  Sum_probs=198.5

Q ss_pred             CCcHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc-ccccccCCc
Q 017259           20 NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~   94 (374)
                      ...++++++.|+++++.+    .+++|+||+++++.++..+     ..+|     +++++..+++++... ......+  
T Consensus        34 ~~~~~~~r~~la~l~~~~~~~~~i~~t~~~t~al~~~~~~l-----~~~~-----~~vlv~~~~~~~~~~~~~a~~~g--  101 (363)
T TIGR02326        34 NIVVEQIRQQLLALATAEEGYTSVLLQGSGTFAVEAVIGSA-----VPKD-----GKLLVVINGAYGARIVQIAEYLG--  101 (363)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCCHHHHHHHHHhc-----CCCC-----CeEEEEeCChhhHHHHHHHHHcC--
Confidence            445667888899888653    5899999999999999887     3445     666666666655431 1111111  


Q ss_pred             cccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           95 EAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                ..+..++.     .|+++++++++++ ++++++.+..+.+++|.+.+    +++|.++|++||+++|+|+
T Consensus       102 ----------~~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~----i~~I~~l~~~~g~~livD~  166 (363)
T TIGR02326       102 ----------IPHHVVDTGEVEPPDVVEVEAILAAD-PAITHIALVHCETTTGILNP----IEAVAKLAHRHGKVTIVDA  166 (363)
T ss_pred             ----------CceEEEeCCCCCCCCHHHHHHHHhhC-CCccEEEEEeecCCccccCc----HHHHHHHHHHcCCEEEEEc
Confidence                      11222222     2789999998864 34667777778889999998    9999999999999999999


Q ss_pred             cccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC------------------CCCCCC
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------------HGSTFG  229 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------------~~~~~~  229 (374)
                      +|+ ++.  .++...  .+.+|++  +++|+++|+. ++|+++.+++..+.+.+..                  ....|.
T Consensus       167 ~~~-~g~--~~~~~~--~~~~D~~~~s~~K~l~~p~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ft  240 (363)
T TIGR02326       167 MSS-FGG--IPIDIA--ELHIDYLISSANKCIQGVP-GFGFVIARQAELAACKGNARSLSLDLYDQWRCMEDNHGKWRFT  240 (363)
T ss_pred             ccc-ccC--cccchh--hcCccEEEecCccccccCC-cceEEEECHHHHHHhhcCCCceeecHHHHHHHHhccCCCCCCC
Confidence            886 432  222222  3345655  6669998777 7899999888776653210                  112456


Q ss_pred             CCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          230 GNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      .+...+.+..++++.+.++    +..++++.+.+++++.|++++..+  ........+.+.++.+++.. ..+..++.+.
T Consensus       241 ~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~v~~~  317 (363)
T TIGR02326       241 SPTHVVHAFAQALLELEKEGGVAARHQRYQQNQKTLVAGMRALGFEP--LLDDEIQSPIITSFYSPEDP-DYRFADFYQR  317 (363)
T ss_pred             CcHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCee--ccCcccCCceEEEEECCCCC-CCCHHHHHHH
Confidence            6777888888888776443    355677777778888776653111  11111123445666665420 0156789999


Q ss_pred             HHHCCeEeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~Gi~v~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |.++||.++++.   .+.+||++....+.+++++++++|++++.
T Consensus       318 L~~~gi~v~~g~~~~~~~iRi~~~~~~~~edv~~~l~~l~~~l~  361 (363)
T TIGR02326       318 LKEQGFVIYPGKVSQVDCFRIGNIGEVDAADITRLLTAIGKAMY  361 (363)
T ss_pred             HHHCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence            999999998873   47899997666899999999999998875

Members of this family are 2-aminoethylphosphonate--pyruvate transaminase. This enzyme acts on the most common type of naturally occurring phosphonate. It interconverts 2-aminoethylphosphonate plus pyruvate with 2-phosphonoacetaldehyde plus alanine. The enzyme phosphonoacetaldehyde hydrolase (EC 3.11.1.1), usually encoded by an adjacent gene, then cleaves the C-P bond of phosphonoacetaldehyde, adding water to yield acetaldehyde plus inorganic phosphate. Species with this pathway generally have an identified phosphonate ABC transporter but do not also have the multisubunit C-P lysase complex as found in Escherichia coli.

>cd06451 AGAT_like Alanine-glyoxylate aminotransferase (AGAT) family

Probab=99.93  E-value=1.2e-23  Score=196.29  Aligned_cols=291  Identities=17%  Similarity=0.166  Sum_probs=196.5

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~   94 (374)
                      .+..+++++.+++++|.+   .+++++||++++..++..+     ..+|     ++|++..++|++...  .+...+...
T Consensus        31 ~~~~~~~~~~la~~~g~~~~~~~~~~~~~t~al~~~~~~~-----~~~g-----~~vl~~~~~~~~~~~~~~~~~~g~~~  100 (356)
T cd06451          31 LALMDEILEGLRYVFQTENGLTFLLSGSGTGAMEAALSNL-----LEPG-----DKVLVGVNGVFGDRWADMAERYGADV  100 (356)
T ss_pred             HHHHHHHHHHHHHHhcCCCCCEEEEecCcHHHHHHHHHHh-----CCCC-----CEEEEecCCchhHHHHHHHHHhCCCe
Confidence            344678999999988762   4789999999999999877     4567     899998877655321  111111111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    .+...+    ...|++++++.+++  .++++++++++++++|.+.+    +++|.++|+++|+++++|++|+ +
T Consensus       101 ~~----v~~~~~----~~~~~~~l~~~i~~--~~~~~v~i~~~~~~~G~~~~----~~~i~~~a~~~~~~li~D~~~~-~  165 (356)
T cd06451         101 DV----VEKPWG----EAVSPEEIAEALEQ--HDIKAVTLTHNETSTGVLNP----LEGIGALAKKHDALLIVDAVSS-L  165 (356)
T ss_pred             EE----eecCCC----CCCCHHHHHHHHhc--cCCCEEEEeccCCCcccccC----HHHHHHHHHhcCCEEEEeeehh-c
Confidence            10    011000    11278999998873  26788888888888999988    9999999999999999999986 3


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC--CCC-----------------CCCCCCCHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP--GEH-----------------GSTFGGNPL  233 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~--~~~-----------------~~~~~~~~~  233 (374)
                      +.  ..+...  ....|++  +.+|.++++. ++|+++.++++.+.+..  ...                 ....+.+..
T Consensus       166 g~--~~~~~~--~~~~d~~~~s~~K~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~  240 (356)
T cd06451         166 GG--EPFRMD--EWGVDVAYTGSQKALGAPP-GLGPIAFSERALERIKKKTKPKGFYFDLLLLLKYWGEGYSYPHTPPVN  240 (356)
T ss_pred             cC--cccccc--ccCccEEEecCchhccCCC-CcceeEECHHHHHHHHhcCCCCceeecHHHHHhhhcccCCCCCCChHH
Confidence            21  112222  2234555  5569999877 78999999888777652  110                 112234555


Q ss_pred             HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          234 ASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       234 ~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      .+.++.++++.+...   .+.++.+++.+++.+.|+.....   ....... .+.+.++.++...   +..++++.|.++
T Consensus       241 ~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~g~~---~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L~~~  314 (356)
T cd06451         241 LLYALREALDLILEEGLENRWARHRRLAKALREGLEALGLK---LLAKPELRSPTVTAVLVPEGV---DGDEVVRRLMKR  314 (356)
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCcccCCCceEEEECCCCC---CHHHHHHHHHHh
Confidence            566777777776543   45667777777787877765311   2111111 2334455454332   578999999998


Q ss_pred             -CeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          310 -GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       310 -Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       ||.++++    .++++|++++..++++|+++++++|+++++
T Consensus       315 ~gI~~~~g~~~~~~~~iRis~~~~~~~e~v~~~~~~l~~~~~  356 (356)
T cd06451         315 YNIEIAGGLGPTAGKVFRIGHMGEATREDVLGVLSALEEALK  356 (356)
T ss_pred             CCEEEecccccccCCEEEEecCCCCCHHHHHHHHHHHHHHhC
Confidence             9999864    257999999989999999999999998764

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to alanine-glyoxylate aminotransferase (AGAT), serine-glyoxylate aminotransferase (SGAT), and 3-hydroxykynurenine transaminase (HKT). AGAT is a homodimeric protein, which catalyses the transamination of glyoxylate to glycine, and SGAT converts serine and glyoxylate to hydroxypyruvate and glycine. HKT catalyzes the PLP-dependent transamination of 3-hydroxykynurenine, a potentially toxic metabolite of the kynurenine pathway.

>cd06453 SufS_like Cysteine desulfurase (SufS)-like

Probab=99.93  E-value=1e-23  Score=197.92  Aligned_cols=285  Identities=16%  Similarity=0.179  Sum_probs=192.9

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..+.++.+.++++++.+   ++++++|++++++.++.++...  ..+|     ++|++.+++|.+.......+....+  
T Consensus        43 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~l~~~--~~~g-----~~vl~~~~~~~~~~~~~~~~~~~~g--  113 (373)
T cd06453          43 DAYEAAREKVARFINAPSPDEIIFTRNTTEAINLVAYGLGRA--NKPG-----DEIVTSVMEHHSNIVPWQQLAERTG--  113 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEeCCHHHHHHHHHHHhhhc--CCCC-----CEEEECcchhHHHHHHHHHHHhhcC--
Confidence            33567888889888755   8999999999999999888520  0156     8999999887653222111110001  


Q ss_pred             ccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                             ..+..++.     -|++++++.+.   ++++++++..+.+++|.+.+    +++|.++|++||++|++|++|+
T Consensus       114 -------~~~~~v~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~li~D~a~~  179 (373)
T cd06453         114 -------AKLKVVPVDDDGQLDLEALEKLLT---ERTKLVAVTHVSNVLGTINP----VKEIGEIAHEAGVPVLVDGAQS  179 (373)
T ss_pred             -------cEEEEeecCCCCCcCHHHHHHHhc---CCceEEEEeCcccccCCcCC----HHHHHHHHHHcCCEEEEEhhhh
Confidence                   11112221     17899999887   47889999889999999988    9999999999999999999987


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCC
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFG  229 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~  229 (374)
                      .. ..    ........+|++++|  |.+++ . ++|+++.++++.+.+.+...+.                     ..+
T Consensus       180 ~~-~~----~~~~~~~~~d~~~~s~~K~~~~-~-g~g~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~t  252 (373)
T cd06453         180 AG-HM----PVDVQDLGCDFLAFSGHKMLGP-T-GIGVLYGKEELLEEMPPYGGGGEMIEEVSFEETTYADLPHKFEAGT  252 (373)
T ss_pred             cC-ce----eeeccccCCCEEEeccccccCC-C-CcEEEEEchHHhhcCCCeecCCCccccccccccccCCCccccCCCC
Confidence            21 11    112223456888777  99887 5 7899989988888776532110                     113


Q ss_pred             CCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          230 GNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      ++..+..+..++++.+.+.+   +.++.+++.+++++.++++.. + .........+.++.+.++..    +..++.++|
T Consensus       253 ~~~~~~~al~~al~~l~~~g~~~~~~~~~~~~~~l~~~l~~~~~-~-~~~~~~~~~~~~~~~~~~~~----~~~~i~~~l  326 (373)
T cd06453         253 PNIAGAIGLGAAIDYLEKIGMEAIAAHEHELTAYALERLSEIPG-V-RVYGDAEDRAGVVSFNLEGI----HPHDVATIL  326 (373)
T ss_pred             CCHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcCCC-e-EEeCCccccCCeEEEEECCc----CHHHHHHHH
Confidence            45556667777788776543   344445555555555544311 0 01111223466777776543    578999999


Q ss_pred             HHCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHH
Q 017259          307 KERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       307 ~~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      .++||.++++.            .+++|++++..+|++|+++++++|
T Consensus       327 ~~~gi~i~~g~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~~~~~l  373 (373)
T cd06453         327 DQYGIAVRAGHHCAQPLMRRLGVPGTVRASFGLYNTEEEIDALVEAL  373 (373)
T ss_pred             HHCCEEeccCccchhHHHHHhCCCCeEEEEecCCCCHHHHHHHHhhC
Confidence            99999986532            579999999999999999998864

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to cysteine desulfurase (SufS) and selenocysteine lyase. SufS catalyzes the removal of elemental sulfur and selenium atoms from L-cysteine, L-cystine, L-selenocysteine, and L-selenocystine to produce L-alanine; and selenocysteine lyase catalyzes the decomposition of L-selenocysteine.

>PRK05937 8-amino-7-oxononanoate synthase; Provisional

Probab=99.92  E-value=5.4e-23  Score=192.41  Aligned_cols=283  Identities=18%  Similarity=0.186  Sum_probs=191.9

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+.+++++++|+++++.+..++.++|+.++...+..+     .++      +.+|+.+..+|+.+........  ..  
T Consensus        54 ~~~~~~~~e~~la~~~~~~~~l~~~sG~~a~~~~~~~~-----~~~------~d~ii~d~~~H~sv~~~~~~~~--~~--  118 (370)
T PRK05937         54 PSSLLDDLEHKIAHFHGAPEAFIVPSGYMANLGLCAHL-----SSV------TDYVLWDEQVHISVVYSLSVIS--GW--  118 (370)
T ss_pred             ChHHHHHHHHHHHHHhCCCeEEEECChHHHHHHHHHHh-----CCC------CCEEEEEhhhhHHHHHHHHHcC--Cc--
Confidence            56789999999999999888888889988886544433     223      3566677777887766554421  11  


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-C-
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G-  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~-  173 (374)
                              ...++++|+++|++.++...   +++++++++++++++|.+.|    +++|.++|+++|+++++||+|+ | 
T Consensus       119 --------~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~v~~v~s~~G~i~p----l~eI~~l~~~~~~~livDea~~~G~  186 (370)
T PRK05937        119 --------HQSFRHNDLDHLESLLESCRQRSFGRIFIFVCSVYSFKGTLAP----LEQIIALSKKYHAHLIVDEAHAMGI  186 (370)
T ss_pred             --------eEEecCCCHHHHHHHHHhhhccCCCcEEEEEecCCCCCCCccC----HHHHHHHHHHcCCEEEEECCccccc
Confidence                    12235679999999998531   34667888999999999999    9999999999999999999998 4 


Q ss_pred             CcccccCcccc--cCCCCCcEEEecccccC-CccchhhheeCHHHHhhcCC--CCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 LARSGRMLASD--WEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 ~~~~g~~~~~~--~~~~~~d~~s~sK~~~~-G~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ++..+..+...  .....+++.|+||.+|+ |.    +++..+++...+..  .....+.+.++++.+++.++++.+.+.
T Consensus       187 ~g~~g~g~~~~~~~~~~~~~~~tlsK~~g~~G~----~vl~~~~~~~~~~~~~~~~~~s~~~~~~~~~a~~aal~~l~~~  262 (370)
T PRK05937        187 FGDDGKGFCHSLGYENFYAVLVTYSKALGSMGA----ALLSSSEVKQDLMLNSPPLRYSTGLPPHLLISIQVAYDFLSQE  262 (370)
T ss_pred             cCCCCCchHHhhCCCCCcEEEEechhhhhcCce----EEEcCHHHHHHHHHhCCCCeecCCCCHHHHHHHHHHHHHHHhC
Confidence            44444332211  11223567799999874 33    34555554444331  112333456777888888888887543


Q ss_pred             --cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---CCCEEEE
Q 017259          249 --KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---HDTIVRL  323 (374)
Q Consensus       249 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---~~~~lRi  323 (374)
                        ...++++++.+++++.+...   .+         +....+.++..    ...++.+.|.++||.++..   ..+++|+
T Consensus       263 ~~~~~~~l~~l~~~l~~~l~~~---~~---------~~~~~i~~~~~----~~~~~~~~L~~~gi~v~~~~~~~~~~iRi  326 (370)
T PRK05937        263 GELARKQLFRLKEYFAQKFSSA---AP---------GCVQPIFLPGI----SEQELYSKLVETGIRVGVVCFPTGPFLRV  326 (370)
T ss_pred             cHHHHHHHHHHHHHHHHhcCCC---CC---------CCEEEEEeCCh----hHHHHHHHHHHCCeeEEeeCCCCCCEEEE
Confidence              23445555555555444221   00         11112334433    4678999999999988742   2568999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          324 TPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +++..+|++|++++++.|+++++ ++
T Consensus       327 s~~~~~t~edid~l~~~L~~~~~-~~  351 (370)
T PRK05937        327 NLHAFNTEDEVDILVSVLATYLE-KY  351 (370)
T ss_pred             EcCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            99999999999999999999998 55

>PLN02672 methionine S-methyltransferase

Probab=99.92  E-value=2.8e-23  Score=210.10  Aligned_cols=299  Identities=13%  Similarity=0.138  Sum_probs=189.6

Q ss_pred             CCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           19 YNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..+.+..+++++++.+|.     +++++++|+++++..++.++     .++|     |.|++..|+|..+...+...+..
T Consensus       732 ~pdlr~aLa~~la~~~Gv~~d~~e~IIvt~Gs~elL~lll~aL-----l~pG-----D~VLVp~PtY~~Y~~~a~~~Ga~  801 (1082)
T PLN02672        732 ETDPRPSILQFIKSNYGFPTDSCTEFVYGDTSLALFNKLVLCC-----VQEG-----GTLCFPAGSNGTYVSAAKFLKAN  801 (1082)
T ss_pred             ChHHHHHHHHHHHHHhCcCCCCCCEEEEeCCHHHHHHHHHHHH-----cCCC-----CEEEEeCCChHHHHHHHHHcCCE
Confidence            355678899999987643     27899999988888888877     5677     99999999998776666555432


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ....    |...+. .+. .|.++++++++.. .+..+++++|.+||||.+. +++.+++|.++|++||++||+||+|++
T Consensus       802 vv~V----pl~~e~-gf~-lD~d~Le~al~~~-~~~~I~L~nPnhNPTG~v~-S~eeLe~Llela~k~di~VIsDEaYsd  873 (1082)
T PLN02672        802 FRRI----PTKSSD-GFK-LTAKTLASTLETV-KKPWVYISGPTINPTGLLY-SNSEIEEILSVCAKYGARVIIDTSFSG  873 (1082)
T ss_pred             EEEE----eccccc-CCC-CCHHHHHHHhccC-CCCEEEEECcCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEeCCCCc
Confidence            2111    111000 000 1678899888632 1234555555558899777 899999999999999999999999997


Q ss_pred             CcccccCc---ccc----cC-CCCC--cE---EEeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          174 LARSGRML---ASD----WE-EVRP--DM---VILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       174 ~~~~g~~~---~~~----~~-~~~~--d~---~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      +.+.+...   ...    .+ ...+  .+   -||||.++ +|+ |+||++++ +++++.+......  .......+.++
T Consensus       874 L~Fd~~~~s~~sl~s~l~~~~~~sks~nVIvL~SfSKkf~lpGL-RIGylIap~~eLi~~l~~~~~~--s~~~~~~q~Aa  950 (1082)
T PLN02672        874 LEYDTSGWGGWDLKSILSRLKSSNPSFAVALLGGLSTELLSGGH-EFGFLALNDSVLIDAFHSAPGL--SRPHSTLKYTI  950 (1082)
T ss_pred             cccCCCCCcccchhhHHHHhccccCCceEEEEeCcHHhhccHHH-HheeEEeCCHHHHHHHHHhhhh--cCCCcHHHHHH
Confidence            65544321   110    11 1111  22   28999888 699 99999986 4477877643111  11122233333


Q ss_pred             HHHHHHHh--hh-------cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccC--------------C
Q 017259          239 IASLDVIR--DE-------KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKT--------------A  294 (374)
Q Consensus       239 ~~al~~~~--~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~--------------~  294 (374)
                      .+++....  ..       +.++.++++++++.+.|+..     +. ...++. +.++|+.++..              .
T Consensus       951 aaalall~~~~~~~~~~l~e~r~~Lk~rRd~L~e~L~~~-----Gi-~v~~PeGGFfLwl~l~~~l~~~~~~~~~~~~~~ 1024 (1082)
T PLN02672        951 KKLLGLKNQKSSDLLDGVAEQKKILKSRAERLKETLEAC-----GW-DVLEPQGGISMVAKPSAYLGKTVKLKSIDGDTG 1024 (1082)
T ss_pred             HHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHC-----CC-eEecCCcEEEEEEEccccccccccccccccccc
Confidence            33332221  11       23344555566666655543     22 223333 45555543210              0


Q ss_pred             CchhHHHHHHHHHHC-CeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 LPVSAYDICLKMKER-GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~-Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+..++++.|+++ ||.+.|+.    ++++||++  ..+++++++++++|+++.+
T Consensus      1025 ~~lds~efae~LLee~GVaV~PGs~FG~~g~~RIsf--a~~~e~LeeALerL~kf~~ 1079 (1082)
T PLN02672       1025 IKLDSSNIREAILKSTGLCINSSSWTGIPGYCRFSF--ALEDSEFDRALKAIARFKE 1079 (1082)
T ss_pred             cCCCHHHHHHHHHHcCCEEEecCcccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH
Confidence            012578899999976 99999863    58999994  4688899999999998765

>PRK09295 bifunctional cysteine desulfurase/selenocysteine lyase; Validated

Probab=99.92  E-value=1e-22  Score=193.09  Aligned_cols=289  Identities=14%  Similarity=0.147  Sum_probs=197.2

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +..+++++.++++++.   +++++|+|++++++.++..+... ..++|     |+|++.++.|++.......+....+  
T Consensus        67 ~~~~~~r~~la~~~~~~~~~~v~~t~g~t~~l~~~~~~~~~~-~~~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g--  138 (406)
T PRK09295         67 EKMENVRKQAALFINARSAEELVFVRGTTEGINLVANSWGNS-NVRAG-----DNIIISEMEHHANIVPWQMLCARVG--  138 (406)
T ss_pred             HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHhhhh-cCCCc-----CEEEECcchhhHHHHHHHHHHHHcC--
Confidence            3466788889988864   48999999999999888765211 14567     9999999888765333222211101  


Q ss_pred             ccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                             ..+..++.     .|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++++|++|+
T Consensus       139 -------~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~l~~~~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~  204 (406)
T PRK09295        139 -------AELRVIPLNPDGTLQLETLPALFD---ERTRLLAITHVSNVLGTENP----LAEMIALAHQHGAKVLVDGAQA  204 (406)
T ss_pred             -------cEEEEEecCCCCCCCHHHHHHhcC---CCcEEEEEecchhcccccCC----HHHHHHHHHHcCCEEEEEcccc
Confidence                   11111211     27889988886   57899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHhhcCCCCCC----------------------CCC
Q 017259          173 GLARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVMLCIQPGEHG----------------------STF  228 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~----------------------~~~  228 (374)
                       ++..  .+..  ....+|++++  +|.++ +. ++|+++.++++.+.+.+...+                      ...
T Consensus       205 -~g~~--~~~~--~~~~~D~~~~s~~K~~g-p~-G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~r~e~G  277 (406)
T PRK09295        205 -VMHH--PVDV--QALDCDFYVFSGHKLYG-PT-GIGILYVKEALLQEMPPWEGGGSMIATVSLTEGTTWAKAPWRFEAG  277 (406)
T ss_pred             -cCcc--ccCc--hhcCCCEEEeehhhccC-CC-CcEEEEEchHhHhhCCCcccCCceeeeeecCCccccCCchhhcCCC
Confidence             3211  2222  2345676644  59554 44 578898888877665432111                      111


Q ss_pred             CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +.+..+..++.++++.+.+.   .+.++.+.+.+++++.|+++    +++.... ..+..++.|.++..    ...++.+
T Consensus       278 T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~----~~~~~~~~~~~~~iv~~~~~~~----~~~~~~~  349 (406)
T PRK09295        278 TPNTGGIIGLGAALDYVSALGLNNIAEYEQNLMHYALSQLESV----PDLTLYGPQNRLGVIAFNLGKH----HAYDVGS  349 (406)
T ss_pred             CccHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCCceEEEEEECCc----CHHHHHH
Confidence            45777888888888887653   44566666666666666543    2221111 12345666666643    5678889


Q ss_pred             HHHHCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|.++||.++.+.            ++.+|++++..+|++|+++++++|+++..
T Consensus       350 ~L~~~gI~v~~g~~c~~~~~~~~~~~~~iRiS~~~ynt~~did~l~~~l~~i~~  403 (406)
T PRK09295        350 FLDNYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVAGLQRIHR  403 (406)
T ss_pred             HHHhCCeEEeccccchHHHHHHHCCCCEEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            9999999997542            36799999999999999999999988764

>PRK09331 Sep-tRNA:Cys-tRNA synthetase; Provisional

Probab=99.92  E-value=9.6e-23  Score=191.75  Aligned_cols=294  Identities=15%  Similarity=0.095  Sum_probs=192.6

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .+..+++++.+++++|.+++++++|+++++..++..+     ..+|     |+|++..++|.+....+...+..      
T Consensus        62 ~~~~~~l~~~lA~~~g~~~~~~~~g~t~a~~~al~~l-----~~~g-----d~Vlv~~~~h~s~~~~~~~~G~~------  125 (387)
T PRK09331         62 KPPIADFHEDLAEFLGMDEARVTHGAREGKFAVMHSL-----CKKG-----DYVVLDGLAHYTSYVAAERAGLN------  125 (387)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEECCCchHHHHHHHHHcCCE------
Confidence            4568899999999999999999999999999999888     4567     99999988865544332221111      


Q ss_pred             CCCCCCCceeccC-------CCHHHHHHHHHhc----CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259          100 FGPLLPGHLKVDF-------GDITALEKIFKES----GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus       100 ~~~~~~~~~~~~~-------~d~~~le~~l~~~----~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                             +..++.       .|+++++++++++    .+++++++++++++++|.+.+    +++|.++|++||+++|+|
T Consensus       126 -------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~lV~l~~~~~~tG~~~~----l~~I~~la~~~g~~livD  194 (387)
T PRK09331        126 -------VREVPKTGYPEYKITPEAYAEKIEEVKEETGKPPALALLTHVDGNYGNLAD----AKKVAKVAHEYGIPFLLN  194 (387)
T ss_pred             -------EEEEeCccCcCCCcCHHHHHHHHHHhhhccCCCCEEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEE
Confidence                   111111       2799999998753    246899999999889999988    999999999999999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCC------C--CCCHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST------F--GGNPLASAVAIA  240 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~------~--~~~~~~~~aa~~  240 (374)
                      ++|+ .+..  ++....++.+..+.|++|+++++. ++|++++++++++.+......+.      +  +.......++++
T Consensus       195 ~a~~-~g~~--~~~~~~~g~D~~~~s~~K~l~~~~-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  270 (387)
T PRK09331        195 GAYT-VGRM--PVDGKKLGADFIVGSGHKSMAASA-PSGVLATTEEYADKVFRTSRKFGVKEVELLGCTLRGAPLVTLMA  270 (387)
T ss_pred             CCcc-cCCc--CCCHHHcCCCEEEeeCcccccCCC-CEEEEEECHHHHhhcccccCCCcccceeeeceecCchHHHHHHH
Confidence            9997 2111  112222333333447789999877 89999999988887654311110      1  112223444455


Q ss_pred             HHHHHhhh-cHHHHHHHHHHHHHHHHHHH-HHhCCCceeeEEEEeeeEEEEeccC-----CCchhHHHHHHHHHHCCeEe
Q 017259          241 SLDVIRDE-KLAERSAHLGEELRQHLFKI-QQQFPNYVKEVRGRGLFNAVEFDKT-----ALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       241 al~~~~~~-~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      +++.+.+. +..++..++.+++++.|+++ +..   +.........++.++.+..     ....++.++.+.|.++||..
T Consensus       271 al~~~~~~~~~~~~~~~~~~~l~~~L~~l~g~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~  347 (387)
T PRK09331        271 SFPHVVERVKRWDEEVKKARWFVDELEKIEGFK---QLGEKPRNHDLMKFETPSFDEIAKKHKRRGFFLYEELKKRGIHG  347 (387)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCEE---EeccCcCcCCeEEEeCCchhHHhhhccccchhHHHHHHHcCceE
Confidence            55544332 23444455666777766655 211   1110012344454443311     00113467999999999985


Q ss_pred             cc-CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          314 KP-THDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       314 ~~-~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+ +....+|+.. ...+++++++++++|+++++ ++
T Consensus       348 ~~~~~~~i~ri~~-~g~t~~di~~l~~aL~~i~~-~~  382 (387)
T PRK09331        348 IKPGATKEFKLST-YGLTWEQVEYVADAFKEIAE-KY  382 (387)
T ss_pred             EccCCceEEEEEe-ccCCHHHHHHHHHHHHHHHH-hc
Confidence            44 4445566653 34799999999999999987 53

>PRK13520 L-tyrosine decarboxylase; Provisional

Probab=99.92  E-value=1.8e-22  Score=189.35  Aligned_cols=286  Identities=16%  Similarity=0.129  Sum_probs=187.9

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      .++++++|++++|.+  .+++++||++++..+++.++... ..+|     ++|++.+++|..+...+... +        
T Consensus        61 ~~~~~~~la~~~g~~~~~~~~~~ggt~a~~~a~~~~~~~~-~~~~-----~~vl~~~~~h~s~~~~~~~~-g--------  125 (371)
T PRK13520         61 EEEAVEMLGELLHLPDAYGYITSGGTEANIQAVRAARNLA-KAEK-----PNIVVPESAHFSFDKAADML-G--------  125 (371)
T ss_pred             HHHHHHHHHHHhCCCCCCeEEecCcHHHHHHHHHHHHhhc-cCCC-----ceEEecCcchHHHHHHHHHc-C--------
Confidence            367889999988764  57899999999999998886431 1234     88999888764432222111 1        


Q ss_pred             CCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259          101 GPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus       101 ~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                          ..+..++.     .|+++++++++   ++++.+++..+.+++|.+.+    +++|.++|+++|+++++|++|+++.
T Consensus       126 ----~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~vi~~~~~~~tG~~~~----l~~I~~l~~~~g~~livD~a~~~~~  194 (371)
T PRK13520        126 ----VELRRAPLDDDYRVDVKAVEDLID---DNTIGIVGIAGTTELGQVDP----IPELSKIALENGIFLHVDAAFGGFV  194 (371)
T ss_pred             ----ceEEEecCCCCCcCCHHHHHHHHh---hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHcCCCEEEEecchhHH
Confidence                11112221     27999999997   35666666666678899998    9999999999999999999998542


Q ss_pred             cc--ccCcccccCCCCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCCCCC----C----CCCCCHHHHHHHHHHH
Q 017259          176 RS--GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHG----S----TFGGNPLASAVAIASL  242 (374)
Q Consensus       176 ~~--g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~~~~----~----~~~~~~~~~~aa~~al  242 (374)
                      ..  .............|.+++|  |...+|. |+|+++. ++++.+.+......    .    ..+.+...++++.+++
T Consensus       195 ~~~~~~~~~~~~~~~~vd~~~~s~~K~~~a~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~~~~~al  273 (371)
T PRK13520        195 IPFLDDPPNFDFSLPGVDSITIDPHKMGLAPI-PAGGILFRDESYLDALAVDTPYLTSKKQATLTGTRSGAGVAATYAVM  273 (371)
T ss_pred             HHhhcCCCCccccCCCCceEEECCccccCccC-CceEEEEcCHHHHHhhcccCccccCCCCcceEeeccChHHHHHHHHH
Confidence            10  1110111111234555544  6545577 8888665 55566665421000    0    0112345567777788


Q ss_pred             HHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-C
Q 017259          243 DVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-D  318 (374)
Q Consensus       243 ~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-~  318 (374)
                      +.+..+   +..++..++.+++.+.|+++.     +.....+...++.+.++      +..++.+.|.++||.++.+. +
T Consensus       274 ~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~v~~~~~------~~~~v~~~L~~~gi~v~~~~~~  342 (371)
T PRK13520        274 KYLGREGYRKVVERCMENTRWLAEELKERG-----FEPVIEPVLNIVAFDDP------NPDEVREKLRERGWRVSVTRCP  342 (371)
T ss_pred             hhhcHhHHHHHHHHHHHHHHHHHHHHHhCC-----CEEecCCCceEEEEecC------CHHHHHHHHHHCCceeccCCCC
Confidence            766544   356777777777777776642     21111223445555554      46789999999999998764 5


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++|++++..+|++|++++++.|+++++
T Consensus       343 ~~iRis~~~~~t~edi~~~~~~l~~~~~  370 (371)
T PRK13520        343 EALRIVCMPHVTREHIENFLEDLKEVKK  370 (371)
T ss_pred             CEEEEEEECCCCHHHHHHHHHHHHHHhh
Confidence            6899998888999999999999998875

>PLN02397 aspartate transaminase

Probab=99.91  E-value=6.9e-23  Score=194.55  Aligned_cols=253  Identities=16%  Similarity=0.116  Sum_probs=160.2

Q ss_pred             cEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhH
Q 017259           71 AIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGY  150 (374)
Q Consensus        71 ~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~  150 (374)
                      |+|++++|+|..+...+...+..........+  .+.    -.|++.+++.+.++.++++++++++++||||.+. +++.
T Consensus       143 d~Vlv~~P~y~~y~~~~~~~g~~~~~v~l~~~--~~~----~~d~~~l~~~l~~~~~~~~~i~~~~P~NPTG~v~-s~e~  215 (423)
T PLN02397        143 STIYIPNPTWGNHHNIFRDAGVPVRTYRYYDP--KTR----GLDFDGLLEDLKAAPDGSFVLLHACAHNPTGVDP-TPEQ  215 (423)
T ss_pred             CEEEEeCCCchhHHHHHHHcCCeEEEeecccC--cCC----ccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHH
Confidence            99999999998876666555443222110000  000    1278888888875545678888888999999888 8999


Q ss_pred             HHHHHHHHHhcCCEEEEeccccCCccccc--C-ccc-ccCCCCCcE---EEeccccc-CCccchhhhe--e-CHHHHh--
Q 017259          151 LKAVRDLCSKYNILMIADEIQSGLARSGR--M-LAS-DWEEVRPDM---VILGKALG-GGVIPVSAVL--A-DKEVML--  217 (374)
Q Consensus       151 l~~l~~l~~~~~i~li~Dea~~~~~~~g~--~-~~~-~~~~~~~d~---~s~sK~~~-~G~~~~G~~~--~-~~~~~~--  217 (374)
                      +++|+++|++||++||+||+|.+|.+.+.  . ... .......++   -||||.++ .|+ |+||++  . ++++++  
T Consensus       216 l~~i~~~a~~~~~~vI~De~Y~~l~~~~~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~G~-RvG~~v~~~~~~~~~~~~  294 (423)
T PLN02397        216 WEQISDLIKSKNHLPFFDSAYQGFASGDLDADAQSVRMFVEDGHEILVAQSYAKNMGLYGE-RVGALSVVCKSADVAVRV  294 (423)
T ss_pred             HHHHHHHHHhCCcEEEEecccCCccCCchhhhhHHHHHHHhcCCcEEEEEECcccCCCccc-cceEEEEEeCCHHHHHHH
Confidence            99999999999999999999998865331  1 111 111111223   38999999 799 999974  3 555433  


Q ss_pred             --hcCCCCCCCCCCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeE
Q 017259          218 --CIQPGEHGSTFGGNPLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFN  286 (374)
Q Consensus       218 --~~~~~~~~~~~~~~~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~  286 (374)
                        .+........++.+.+++.++..+++.-.        -+++.++++++++.+.+.|+++..  +..... .+..|.|.
T Consensus       295 ~~~~~~~~~~~~~~~~~~~q~~~~~~L~~~~~~~~~~~~~~~~~~~~~~rr~~l~~~L~~~~~--~~~~~~~~p~gg~fl  372 (423)
T PLN02397        295 KSQLKLIARPMYSNPPIHGASIVATILGDPELFSEWTKELKGMADRIISMRQKLYDALEARGS--PGDWSHITKQIGMFS  372 (423)
T ss_pred             HHHHHHHHhcccCCCcHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCCcccCCceEEE
Confidence              33222122233556777777766664311        012344556666666666665421  000111 23345555


Q ss_pred             EEEeccCCCchhHHHHHHHHHH-CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          287 AVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+.++        .+++++|++ .||.+.+.+    ||++. ..+++.+++++++|+++++
T Consensus       373 ~~~l~--------~~~~~~Ll~~~~V~v~~~~----Ri~~~-~~~~~~i~~~~~~i~~~~~  420 (423)
T PLN02397        373 FTGLN--------KEQVDRMTKEYHIYMTRDG----RISMA-GLSSKNVPYLADAIHAVVT  420 (423)
T ss_pred             ecCCC--------HHHHHHHHHhCCEEECCCC----eEEEe-eCCHHHHHHHHHHHHHHHh
Confidence            55432        358888865 599997443    99842 2788999999999999875

>TIGR01979 sufS cysteine desulfurases, SufS subfamily

Probab=99.91  E-value=2.7e-22  Score=190.22  Aligned_cols=288  Identities=14%  Similarity=0.132  Sum_probs=194.8

Q ss_pred             cHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           22 KFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+++.+.+++++|.   +++++++|++++++.++..+... ...+|     ++|++.++.|++.......+....+.  
T Consensus        63 ~~~~~r~~ia~~~~~~~~~~v~~~~g~t~~l~~~~~~~~~~-~~~~g-----~~vl~~~~~~~s~~~~~~~~~~~~g~--  134 (403)
T TIGR01979        63 AYEAVREKVAKFINAASDEEIVFTRGTTESINLVAYSWGDS-NLKAG-----DEIVISEMEHHANIVPWQLLAERTGA--  134 (403)
T ss_pred             HHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHHhhhh-cCCCC-----CEEEECcchhhHHHHHHHHHHHhcCc--
Confidence            456788889988864   47999999999999888776311 13566     89999999876643222111110011  


Q ss_pred             cCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                             .+..++.     .|++++++.+.   ++++++++..+++++|.+.+    +++|.++|++||+++|+|++|+.
T Consensus       135 -------~~~~v~~~~~~~~~~~~l~~~i~---~~~~lv~~~~~~~~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~~  200 (403)
T TIGR01979       135 -------TLKFIPLDDDGTLDLDDLEKLLT---EKTKLVAITHVSNVLGTVNP----VEEIAKLAHQVGAKVLVDGAQAV  200 (403)
T ss_pred             -------EEEEEecCCCCCCCHHHHHHHhc---cCCeEEEEEcccccccccCC----HHHHHHHHHHcCCEEEEEchhhc
Confidence                   1111111     26888988886   57899999999999999998    99999999999999999999972


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCCC
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFGG  230 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~  230 (374)
                      . .  ..  .+.....+|++  +++|.++ +. ++|+++.++++.+.+.+...+.                     ..+.
T Consensus       201 g-~--~~--~~~~~~~~d~~~~s~~K~~g-p~-G~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~gt~  273 (403)
T TIGR01979       201 P-H--MP--VDVQALDCDFYVFSGHKMYG-PT-GIGVLYGKEELLEQMPPFLGGGEMIAEVSFEETTYNEAPHKFEAGTP  273 (403)
T ss_pred             C-c--cc--cCccccCCCEEEEecccccC-CC-CceEEEEchHHHhcCCCeecCCCceeecccCccccCCChhhcCCCCc
Confidence            1 1  11  12223345665  6669764 44 5788888888777665321110                     0134


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee----EEEEeeeEEEEeccCCCchhHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE----VRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~----~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      +..+++++.++++.+.+.   .+.++..++.+++++.|+.+    +++...    ...++.++.|.++..    +..++.
T Consensus       274 ~~~~~~al~~al~~~~~~g~~~~~~~~~~l~~~l~~~l~~~----~g~~~~~~~~~~~~~~~v~~~~~~~----~~~~~~  345 (403)
T TIGR01979       274 NIAGVIGLGAAIDYLEAIGLENIEAHEHELTAYALERLGEI----PGLRIYGPRDAEDRGGIISFNVEGV----HPHDVG  345 (403)
T ss_pred             cHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCccccCceEEEEeCCc----CHHHHH
Confidence            556667777777776542   44566666666666666543    222111    112356777777543    467889


Q ss_pred             HHHHHCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          304 LKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       304 ~~l~~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|.++||.++.+.            .+++||+++..++++|+++++++|+++++
T Consensus       346 ~~L~~~gI~v~~g~~~~~~~~~~~~~~~~iRiS~~~~~t~~di~~l~~~l~~~~~  400 (403)
T TIGR01979       346 TILDEEGIAVRSGHHCAQPLMRRFGVPATCRASFYIYNTEEDIDALVEALKKVRK  400 (403)
T ss_pred             HHHhhCCEEEcchhhhhHHHHHHhCCCCEEEEEeccCCCHHHHHHHHHHHHHHHH
Confidence            99999999997532            57899999999999999999999999887

This model represents a subfamily of NifS-related cysteine desulfurases involved in FeS cluster formation needed for nitrogen fixation among other vital functions. Many cysteine desulfurases are also active as selenocysteine lyase and/or cysteine sulfinate desulfinase. This subfamily is associated with the six-gene SUF system described in E. coli and Erwinia as an FeS cluster formation system during oxidative stress. The active site Cys is this subfamily resembles GHHC with one or both His conserved.

>cd00613 GDC-P Glycine cleavage system P-protein, alpha- and beta-subunits

Probab=99.91  E-value=7.1e-23  Score=193.95  Aligned_cols=287  Identities=17%  Similarity=0.144  Sum_probs=186.2

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC-ccc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~   96 (374)
                      .++++++++++++++|.+  ++++++||+++.+.++..+...  ..+|     |+|++.++. |+.+.......+. .+.
T Consensus        63 ~~~~~~~~~~la~~~g~~~~~v~~~~~g~~~~~~~~~~~~~~--~~~g-----d~Vl~~~~~-h~~~~~~~~~~~~~~g~  134 (398)
T cd00613          63 LQALFELQTMLCELTGMDVANASLQDEATAAAEAAGLAAIRA--YHKR-----NKVLVPDSA-HPTNPAVARTRGEPLGI  134 (398)
T ss_pred             HHHHHHHHHHHHHHHCCCccceeccCchHHHHHHHHHHHHhc--ccCC-----CEEEEcCcc-CcchHHHHHHhcccCCc
Confidence            346778999999988766  7888887877777776666421  1135     889888776 4554444433321 111


Q ss_pred             cccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                               .+..+++     .|++++++++.   ++++++++++++ ++|.+.   +++++|.++|++||+++|+|++|
T Consensus       135 ---------~~~~v~~~~~~~~d~~~l~~~i~---~~t~~viv~~~~-~~G~~~---~~l~~i~~la~~~g~~livD~~~  198 (398)
T cd00613         135 ---------EVVEVPSDEGGTVDLEALKEEVS---EEVAALMVQYPN-TLGVFE---DLIKEIADIAHSAGALVYVDGDN  198 (398)
T ss_pred             ---------EEEEeccCCCCCcCHHHHHHhcC---CCeEEEEEECCC-CCceec---chHHHHHHHHHhcCCEEEEEecc
Confidence                     1112222     26888888886   579999998874 677764   34699999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--Eeccccc----CCccchhhheeCHHHHhhcCCC-----------------------
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALG----GGVIPVSAVLADKEVMLCIQPG-----------------------  222 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~----~G~~~~G~~~~~~~~~~~~~~~-----------------------  222 (374)
                      +......   ...  ...+|++  +++|.+.    ||+ ++|+++.++++.+.+...                       
T Consensus       199 ~~~~~~~---~~~--~~~~d~~~~s~~K~~~p~g~Ggp-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  272 (398)
T cd00613         199 LNLTGLK---PPG--EYGADIVVGNLQKTGVPHGGGGP-GAGFFAVKKELVRFLPGRLVGVTKDAEGNRAFRLALQTREQ  272 (398)
T ss_pred             ccccCCC---ChH--HcCCCEEEeeccccCCCCCCCCC-ceeEEEEhhhhHhhCCCCeeccccccCCCcceEEecccchh
Confidence            6321111   111  1245665  6678763    367 888898888877765321                       


Q ss_pred             ------CCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          223 ------EHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       223 ------~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                            ....+++.+.+.++++..+++.+.++   ++.++.+++.++++++|+++....  ...  ......+++.++..
T Consensus       273 ~~r~e~~~~~~~~~~~~~~~~a~~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~~~~--~~~--~~~~~~v~~~~~~~  348 (398)
T cd00613         273 HIRREKATSNICTGQALLALMAAMYIVYLGPEGLKEIAERAHLNANYLAKRLKEVGGVL--PFN--GPFFHEFVLRLPPL  348 (398)
T ss_pred             hcccccccccceecHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhcCCcc--cCC--CCeeEEEEEEcCCc
Confidence                  01123444556666666666665443   456788888888888887753221  011  11222334555431


Q ss_pred             CCchhHHHHHHHHHHCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          294 ALPVSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       294 ~~~~~~~~~~~~l~~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                       .+.+..++++.|.++||.+...   ..+.+|++|+..+|++|++++++.|
T Consensus       349 -~~~~~~~~~~~L~~~gi~~~~~~~~~~~~lRis~~~~~t~edid~~~~~L  398 (398)
T cd00613         349 -YGIRAEDLAKALIDGGFHAPTMYLPVDGTLMIEPTETETKEELDALLEAL  398 (398)
T ss_pred             -chHHHHHHHHhhhhcCccccccccCCCCeEEEEcCCCCCHHHHHHHHHhC
Confidence             0125788999999999988653   4689999999999999999998864

This family consists of Glycine cleavage system P-proteins EC:1.4.4.2 from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex EC:2.1.2.10 (GDC) also annotated as glycine cleavage system or glycine synthase. GDC consists of four proteins P, H, L and T. The reaction catalysed by this protein is: Glycine + lipoylprotein <= S-aminomethyldihydrolipoylprotein + CO2. Alpha-beta-type dimers associate to form an alpha(2)beta(2) tetramer, where the alpha- and beta-subunits are structurally similar and appear to have arisen by gene duplication and subsequent divergence with a loss of one active site. The members of this CD are widely dispersed among all three forms of cellular life.

>cd06502 TA_like Low-specificity threonine aldolase (TA)

Probab=99.91  E-value=8.3e-23  Score=189.23  Aligned_cols=294  Identities=15%  Similarity=0.102  Sum_probs=190.5

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc--ccccCCc
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDN   94 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~   94 (374)
                      +++.+.+.++++.+++++|.+++++++||++++..++..+     ..+|     |+|++.+++|.......  ..+.+..
T Consensus        28 ~~~~~~~~~l~~~~a~~~g~~~~~~~~~gt~a~~~~~~~l-----~~~g-----d~v~~~~~~~~~~~~~~~~~~~~g~~   97 (338)
T cd06502          28 YGEDPTTAKLEARAAELFGKEAALFVPSGTAANQLALAAH-----TQPG-----GSVICHETAHIYTDEAGAPEFLSGVK   97 (338)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCeEEEecCchHHHHHHHHHh-----cCCC-----CeEEEecCcceeeecCCcHHHHcCce
Confidence            3457788999999999999778999999999999998877     4566     99999888864332211  1111111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcC----CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESG----DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ...   .+  .+  . ...|++++++++++..    ++++++++++++|+ |.+. +.+.+++|.++|++||+++|+||+
T Consensus        98 ~~~---v~--~~--~-~~~d~~~l~~~i~~~~~~~~~~~~~v~l~~p~n~-g~~~-~~~~l~~i~~~~~~~~~~livDea  167 (338)
T cd06502          98 LLP---VP--GE--N-GKLTPEDLEAAIRPRDDIHFPPPSLVSLENTTEG-GTVY-PLDELKAISALAKENGLPLHLDGA  167 (338)
T ss_pred             EEe---ec--CC--C-CcCCHHHHHHHhhccCCCcCCcceEEEEEeecCC-cccc-CHHHHHHHHHHHHHcCCeEeechH
Confidence            110   01  00  0 0137899999887421    36788888887775 5555 788899999999999999999999


Q ss_pred             ccCC--cccccCcccccCCCCCcEE--EecccccCCccchhh-heeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHH
Q 017259          171 QSGL--ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA-VLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       171 ~~~~--~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~  243 (374)
                      |..+  ...|.  ........+|++  ++||+++.   +.|+ ++.++++.+.+....  .+.++..+.++++++.++++
T Consensus       168 ~~~~~~~~~~~--~~~~~~~~~d~~~~s~sK~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~L~  242 (338)
T cd06502         168 RLANAAAALGV--ALKTYKSGVDSVSFCLSKGGGA---PVGAVVVGNRDFIARARRRRKQAGGGMRQSGFLAAAGLAALE  242 (338)
T ss_pred             HHHHHHHhcCC--CHHHHHhcCCEEEEeccccCCC---ccceEEECCHHHHHHHHHHHHHhCCChhhHHHHHHHHHHHhc
Confidence            8522  11121  111111234444  78899873   2344 456888877776432  22344556677777777665


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH---HCCeEeccCCCCE
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK---ERGILAKPTHDTI  320 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~---~~Gi~v~~~~~~~  320 (374)
                      .....+..+++.++.+++.+.|+++...    +  ..+.++++.+.++...  ....++.+.+.   ++|+.+.+...++
T Consensus       243 ~~~~~~~~~~~~~~~~~l~~~L~~~~~~----~--~~~~~~~~~v~~~~~~--~~~~~l~~~l~~~~~~gi~~~~~~~~~  314 (338)
T cd06502         243 NDLWLRRLRHDHEMARRLAEALEELGGL----E--SEVQTNIVLLDPVEAN--AVFVELSKEAIERRGEGVLFYAWGEGG  314 (338)
T ss_pred             CchHHHHHHHHHHHHHHHHHHHHhcCCC----c--ccccCCeEEEecCCcc--HHHHHHHHHHHHhhhCCEEEEecCCCe
Confidence            3211234566666777777777665321    1  2234555555553221  12334455544   6799998876699


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +|+++++.++++|++++++++++
T Consensus       315 lRi~~~~~~~~~~i~~~~~~l~~  337 (338)
T cd06502         315 VRFVTHWDTTEEDVDELLSALKA  337 (338)
T ss_pred             EEEEeecCCCHHHHHHHHHHHhc
Confidence            99999999999999999998864

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). TA catalyzes the conversion of L-threonine or L-allo-threonine to glycine and acetaldehyde in a secondary glycine biosynthetic pathway.

>TIGR03402 FeS_nifS cysteine desulfurase NifS

Probab=99.91  E-value=3.7e-22  Score=187.71  Aligned_cols=293  Identities=17%  Similarity=0.168  Sum_probs=191.1

Q ss_pred             cHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           22 KFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .++++++++++++|.  +++++++|++++++.++..+...  ..+|     ++|++....|++.......+... +....
T Consensus        43 ~~~~~r~~la~~~g~~~~~i~~t~~~t~a~~~al~~~~~~--~~~~-----~~vv~~~~~~~s~~~~~~~~~~~-G~~v~  114 (379)
T TIGR03402        43 AVEEAREQVAKLLGAEPDEIIFTSGGTESDNTAIKSALAA--QPEK-----RHIITTAVEHPAVLSLCQHLEKQ-GYKVT  114 (379)
T ss_pred             HHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHh--cCCC-----CeEEEcccccHHHHHHHHHHHHc-CCEEE
Confidence            456778889998864  47999999999999999877421  1233     78888887776543322222111 11111


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR  179 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~  179 (374)
                      ..+...+..    .|+++++++++   +++++++++.++|++|.+.+    +++|.++|++||+++++|++|+ ++   .
T Consensus       115 ~v~~~~~g~----~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~~~~-~g---~  179 (379)
T TIGR03402       115 YLPVDEEGR----LDLEELRAAIT---DDTALVSVMWANNETGTIFP----IEEIGEIAKERGALFHTDAVQA-VG---K  179 (379)
T ss_pred             EEccCCCCc----CCHHHHHHhcC---CCcEEEEEEcccCCeeeccc----HHHHHHHHHHcCCEEEEECccc-cc---c
Confidence            111111110    27899998886   57889999999999999998    9999999999999999999997 32   1


Q ss_pred             CcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHHHHhhh--
Q 017259          180 MLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRDE--  248 (374)
Q Consensus       180 ~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~~~~~~--  248 (374)
                       ...+......|++++|  | +.|+. ++|+++.+++.  .+.+...       ......+..+..+..++++.+.+.  
T Consensus       180 -~~~~~~~~~~D~~~~s~~K-~~gp~-G~g~l~v~~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~~  254 (379)
T TIGR03402       180 -IPIDLKEMNIDMLSLSGHK-LHGPK-GVGALYIRKGT--RFRPLLRGGHQERGRRAGTENVPGIVGLGKAAELATEHLE  254 (379)
T ss_pred             -cccCcccCCCCEEEEcHHH-cCCCC-ceEEEEECCCC--CCCCcccCCccCCCcCCCCccHHHHHHHHHHHHHHHHhHH
Confidence             1223334567888888  9 65555 67887777653  2222211       112345667777777777776442  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC--------
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--------  317 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--------  317 (374)
                      +..++.+++.+++++.|++   .+|++.....   ..+..+.+.++..    +..++.+.|.++||.++.+.        
T Consensus       255 ~~~~~~~~l~~~l~~~l~~---~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gI~v~~g~~c~~~~~~  327 (379)
T TIGR03402       255 EENTRVRALRDRLEAGLLA---RIPDARLNGDPTKRLPNTVNISFEYI----EGEAILLLLDMEGICASSGSACTSGSLE  327 (379)
T ss_pred             HHHHHHHHHHHHHHHHHHh---hCCCEEEeCCCccCCCCEEEEEecCC----CHHHHHHhhccCCEEEEchhhcCCCCCC
Confidence            3335555555566555543   1222221111   1122344444433    57789999989999997642        


Q ss_pred             ---------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          318 ---------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       318 ---------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                                     .+.+|++++..+|++|++++++.|+++++ ++.
T Consensus       328 ~~~~~~~lg~~~~~~~~~vR~S~~~~~t~~di~~~~~~l~~~~~-~~~  374 (379)
T TIGR03402       328 PSHVLRAMGVPHTAAHGSIRFSLSRYNTEEDIDYVLEVLPPIIA-RLR  374 (379)
T ss_pred             cCHHHHHcCCChhhcCceEEEEcCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence                           36899999999999999999999999998 653

Members of this protein family are NifS, one of several related families of cysteine desulfurase involved in iron-sulfur (FeS) cluster biosynthesis. NifS is part of the NIF system, usually associated with other nif genes involved in nitrogenase expression and nitrogen fixation. The protein family is given a fairly broad interpretation here. It includes a clade nearly always found in extended nitrogen fixation genomic regions, plus a second clade more closely related to the first than to IscS and also part of NifS-like/NifU-like systems. This model does not extend to a more distantly clade found in the epsilon proteobacteria such as Helicobacter pylori, also named NifS in the literature, built instead in TIGR03403.

>cd06452 SepCysS Sep-tRNA:Cys-tRNA synthase

Probab=99.91  E-value=2.2e-22  Score=187.90  Aligned_cols=297  Identities=12%  Similarity=0.086  Sum_probs=186.7

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      ++...++++++++++|.+++++++|+++++..++..+     .++|     |+|++..++|++....+...+......  
T Consensus        43 ~~~~~~l~~~la~~~g~~~i~~~~g~t~al~~~l~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~v--  110 (361)
T cd06452          43 KPPIKDFHHDLAEFLGMDEARVTPGAREGKFAVMHSL-----CEKG-----DWVVVDGLAHYTSYVAAERAGLNVREV--  110 (361)
T ss_pred             CchHHHHHHHHHHHcCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCcchHHHHHHHhcCCEEEEE--
Confidence            4668899999999999999999999999999999887     5667     999999888655443222222111110  


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcC----CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESG----DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~----~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                        +...+.. . ..|++++++++++..    ++++++++++++|++|...+    +++|.++|+++|+++|+|++|+ ++
T Consensus       111 --~~~~~~~-~-~~d~~~l~~~l~~~~~~~~~~~~lv~l~~p~n~tG~~~~----~~~i~~~~~~~~~~vivD~a~~-~g  181 (361)
T cd06452         111 --PNTGHPE-Y-HITPEGYAEVIEEVKDEFGKPPALALLTHVDGNYGNLHD----AKKIAKVCHEYGVPLLLNGAYT-VG  181 (361)
T ss_pred             --ecCCCCC-c-ccCHHHHHHHHHHHhhccCCCceEEEEECCCCCCeeecc----HHHHHHHHHHcCCeEEEECCcc-cC
Confidence              1000000 0 127899998887421    36889999888888998887    9999999999999999999997 21


Q ss_pred             ccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCC-----CC---CCCHHHHHHHHHHHHHHhh
Q 017259          176 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TF---GGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~-----~~---~~~~~~~~aa~~al~~~~~  247 (374)
                      .  ..+....++.+..+.|++|+++++. |+|++++++++.+.+.......     ++   ......+.++.++++.+.+
T Consensus       182 ~--~~~~~~~~~~d~~~~s~~K~l~~~~-~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~  258 (361)
T cd06452         182 R--MPVSGKELGADFIVGSGHKSMAASA-PIGVLATTEEWADIVFRTSQMFKIKEVELLGCTLRGAPLVTLMASFPHVKE  258 (361)
T ss_pred             C--cCCCHHHcCCCEEEecCCccccCCC-CeEEEEECHHHHHHHhccccccccceeeeeccccCchHHHHHHHHHHHHHH
Confidence            1  1122222233223447889998877 9999999998888875432110     10   1111234444555554322


Q ss_pred             h-cHHHHHHHHHHHHHHHHHHHHHhCCCceee--EEEEeeeEEEEeccCC-----CchhHHHHHHHHHHCCeEecc-CCC
Q 017259          248 E-KLAERSAHLGEELRQHLFKIQQQFPNYVKE--VRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGILAKP-THD  318 (374)
Q Consensus       248 ~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~v~~-~~~  318 (374)
                      . +...+..++.+++++.|+++    +++...  ..+..+++.+..+...     ......++.++|+++||.+.. +..
T Consensus       259 ~~~~~~~~~~~~~~l~~~L~~l----~g~~v~~~~~~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gI~~~~~~~~  334 (361)
T cd06452         259 RVKRWDEEVEKARWFVAELEKI----EGIKQLGEKPKNHDLMFFETPSFDEIAKKHKRRGYFLYSELKKRGIHGIKPGLT  334 (361)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCCCCCceEEEEcCCcchhhhhccccchhHHHHHHHcCceEEcCCCc
Confidence            1 11222223345666666544    222110  1234445555443110     001234799999999999754 335


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ..+|++.. ..++++++.++++|+++.
T Consensus       335 ~~~ri~~~-g~~~e~~~~l~~al~~~~  360 (361)
T cd06452         335 RYFKLSTY-GLTWEQVEYVVDAFKEIA  360 (361)
T ss_pred             eEEEEEec-CCCHHHHHHHHHHHHHHh
Confidence            68899842 369999999999998765

This family belongs to the pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). Cys-tRNA(Cys) is produced by O-phosphoseryl-tRNA synthetase which ligates O-phosphoserine (Sep) to tRNA(Cys), and Sep-tRNA:Cys-tRNA synthase (SepCysS) converts Sep-tRNA(Cys) to Cys-tRNA(Cys), in methanogenic archaea. SepCysS forms a dimer, each monomer is composed of a large and small domain; the larger, a typical pyridoxal 5'-phosphate (PLP)-dependent-like enzyme fold. In the active site of each monomer, PLP is covalently bound to a conserved Lys residue near the dimer interface.

>PRK13479 2-aminoethylphosphonate--pyruvate transaminase; Provisional

Probab=99.91  E-value=4.7e-22  Score=186.30  Aligned_cols=296  Identities=13%  Similarity=0.105  Sum_probs=195.8

Q ss_pred             CcHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCc
Q 017259           21 DKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~   94 (374)
                      +.++++++.+++++|.+    .+++++||+++++.++..+     ..+|     +++++..++|++...  .+...+...
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~~i~~~~~gt~~l~~~~~~l-----~~~~-----~~vlv~~~~~~~~~~~~~~~~~g~~~  106 (368)
T PRK13479         37 ALTASVRAKLVAIATGEEGYTCVPLQGSGTFSVEAAIGSL-----VPRD-----GKVLVPDNGAYGARIAQIAEYLGIAH  106 (368)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCcHHHHHHHHHhc-----cCCC-----CeEEEEeCCchHHHHHHHHHHcCCcE
Confidence            46778888899888653    4789999999999999988     3455     788887777666531  111111111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    .+...+    ...|+++++++++++ ++++++++.++++++|...+    +++|.++|+++|+++|+|++++ +
T Consensus       107 ~~----i~~~~~----~~~d~~~l~~~l~~~-~~~~~v~~~~~~~~tG~~~~----~~~i~~l~~~~~~~livDa~~~-~  172 (368)
T PRK13479        107 VV----LDTGED----EPPDAAEVEAALAAD-PRITHVALVHCETTTGILNP----LDEIAAVAKRHGKRLIVDAMSS-F  172 (368)
T ss_pred             EE----EECCCC----CCCCHHHHHHHHHhC-CCCcEEEEEcccCccccccC----HHHHHHHHHHcCCEEEEEcccc-c
Confidence            10    010000    012789999988754 45677888888889999998    9999999999999999997764 5


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-----------------CCCCCCCCHHHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-----------------HGSTFGGNPLAS  235 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~  235 (374)
                      +.  ..+..  ..+.+|++  +++|++.|+. ++|++++++++.+.+....                 ....|+.+..++
T Consensus       173 g~--~~~~~--~~~~~d~~v~s~~K~l~g~~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~  247 (368)
T PRK13479        173 GA--IPIDI--AELGIDALISSANKCIEGVP-GFGFVIARRSELEACKGNSRSLSLDLYDQWAYMEKTGQWRFTPPTHVV  247 (368)
T ss_pred             CC--ccccc--cccCceEEEecCccccccCC-CceEEEECHHHHHHhhcCCCCeeecHHHHHhhhcccCCCCCCCcHHHH
Confidence            32  12222  22345654  6669988766 6799999998877765431                 111246677777


Q ss_pred             HHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          236 AVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       236 ~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      .++.++++.+.++    +..++++++++++++.|++++...  ........+....+.++... ..+..++.+.|.++||
T Consensus       248 ~~l~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~L~~~gi  324 (368)
T PRK13479        248 AAFYQALLELEEEGGVPARGARYANNQRTLVAGMRALGFEP--LLDAEIQSPIIVTFHAPADP-AYDFKEFYERLKEQGF  324 (368)
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHHcCCcc--cCCchhcCceEEEEECCCCC-CcCHHHHHHHHHHCCE
Confidence            7777788766443    344566667777777776653211  11111112223444343321 0146789999999999


Q ss_pred             EeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          312 LAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       312 ~v~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++++.   .+++|++....++++|+++++++|+++++ ++
T Consensus       325 ~v~~g~~~~~~~iRis~~~~~t~edi~~~l~~L~~~l~-~~  364 (368)
T PRK13479        325 VIYPGKLTQVDTFRIGCIGDVDAADIRRLVAAIAEALY-WM  364 (368)
T ss_pred             EEecCCCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            998753   35899986556799999999999999998 54

>PRK10534 L-threonine aldolase; Provisional

Probab=99.91  E-value=8.6e-23  Score=188.65  Aligned_cols=290  Identities=15%  Similarity=0.133  Sum_probs=187.9

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-ccccCCcccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEAI   97 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~~   97 (374)
                      +.+.+.+|++.|++++|.+.+++++||++++..++.++     ..+|     |+|++..++|....... ....+.  ..
T Consensus        32 ~~~~~~~L~~~la~~~g~~~~~v~~~g~~a~~~~l~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~~~--~~   99 (333)
T PRK10534         32 DDPTVNALQDYAAELSGKEAALFLPTGTQANLVALLSH-----CERG-----EEYIVGQAAHNYLYEAGGAAVLGS--IQ   99 (333)
T ss_pred             CCHHHHHHHHHHHHHhCCCeEEEeCchHHHHHHHHHHh-----cCCC-----CeeEEechhhhhHhcCCchHHhcC--ce
Confidence            67889999999999999999999999999988888766     5567     88888877753221110 111110  00


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ....+...+.    ..|++++++++.++.   .+++++++++++  +|.+. +.+.+++|.++|++|+++|++||+|. +
T Consensus       100 ~~~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~lv~l~np~--~G~v~-~~~~l~~i~~~~~~~~~~lvvDEA~~-~  171 (333)
T PRK10534        100 PQPIDAAADG----TLPLDKVAAKIKPDDIHFARTRLLSLENTH--NGKVL-PREYLKQAWEFTRERNLALHVDGARI-F  171 (333)
T ss_pred             EEeecCCCCC----CCCHHHHHHhhcccCcCcccceEEEEecCC--CCeec-CHHHHHHHHHHHHHcCCeEEeeHHHH-H
Confidence            0000100111    127899988886310   157888887543  47777 78899999999999999999999987 3


Q ss_pred             ccc---ccCcccccCCCCC-cEEEecccccCCccchh-hheeCHHHHhhcCCCCCCC--CCCCCHHHHHHHHHHHHHHhh
Q 017259          175 ARS---GRMLASDWEEVRP-DMVILGKALGGGVIPVS-AVLADKEVMLCIQPGEHGS--TFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       175 ~~~---g~~~~~~~~~~~~-d~~s~sK~~~~G~~~~G-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ...   +.... ......+ -+++|||+++  + ++| |+++++++++.++......  .+..+.++++++.++++..  
T Consensus       172 ~~~~~~~~~~~-~~~~~~~~~~~s~SK~~~--~-~~G~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~a~~~~~l~~~--  245 (333)
T PRK10534        172 NAVVAYGCELK-EITQYCDSFTICLSKGLG--T-PVGSLLVGNRDYIKRARRWRKMTGGGMRQAGILAAAGLYALKHN--  245 (333)
T ss_pred             HHHHHcCCCHH-HHHhcCCEEEEEeEcCCC--C-cccceEEcCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHhh--
Confidence            111   11110 1111112 2458999876  3 467 4778888888876432211  2233445666666666532  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPL  327 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~  327 (374)
                      .+..++..+.++++.+.|++++     +. ..++.++|+++.++..    ...++.+.|.++||.++++.  .+|++...
T Consensus       246 ~~~~~~~~~~r~~l~~~L~~~g-----~~-~~~~~~nfv~~~~~~~----~~~~~~~~l~~~gi~v~~~~--~~rl~~~~  313 (333)
T PRK10534        246 VARLQEDHDNAAWLAEQLREAG-----AD-VMRQDTNMLFVRVGEE----QAAALGEYMRERNVLINASP--IVRLVTHL  313 (333)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCC-----Cc-cCCCCceEEEEECCch----hHHHHHHHHHHcCeeecCCc--eEEEEEEe
Confidence            2334444455667777777652     21 1223577888777532    46788999999999998873  68998655


Q ss_pred             CCCHHHHHHHHHHHHHHHh
Q 017259          328 SISSNELQEGSKALHDVLE  346 (374)
Q Consensus       328 ~~~~e~i~~~~~~l~~~~~  346 (374)
                      -.|++++++++++|++++.
T Consensus       314 r~t~e~~~~~~~~l~~~~~  332 (333)
T PRK10534        314 DVSREQLAEVVAHWRAFLA  332 (333)
T ss_pred             CCCHHHHHHHHHHHHHHhc
Confidence            6799999999999997764

>PRK03967 histidinol-phosphate aminotransferase; Provisional

Probab=99.91  E-value=1.2e-22  Score=187.65  Aligned_cols=273  Identities=16%  Similarity=0.170  Sum_probs=177.0

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++  .+++++|+|+++++..++..+       +|     |+|++..|+|..+...+...+....
T Consensus        52 Y~~~g~~~lr~~ia~~~~~~~~~I~~t~G~~~~l~~~~~~~-------~g-----d~V~v~~P~y~~~~~~~~~~g~~~~  119 (337)
T PRK03967         52 YPHITSDPLREAIAEFYGLDAENIAVGNGSDELISYLVKLF-------EG-----KHIVITPPTFGMYSFYAKLNGIPVI  119 (337)
T ss_pred             CCCCCHHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHh-------CC-----CeEEEeCCChHHHHHHHHHcCCeEE
Confidence            455567788888888774  568999999999998766543       36     9999999999654433222221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+..    .|++++++.+    ++++++++.+++||+|.+.+    .++|.++++ +++++|+||+|.+|.
T Consensus       120 ~v----~~~~~~~----~d~~~l~~~~----~~~~~v~~~~P~NPtG~~~~----~~~l~~i~~-~~~~ii~De~y~~~~  182 (337)
T PRK03967        120 DV----PLKEDFT----IDGERIAEKA----KNASAVFICSPNNPTGNLQP----EEEILKVLE-TGKPVVLDEAYAEFS  182 (337)
T ss_pred             Ee----ecCCCCC----cCHHHHHHhc----cCCCEEEEeCCCCCCCCCCC----HHHHHHHHh-cCCEEEEECchhhhc
Confidence            00    1100000    2677777654    35677778788999999886    667777774 799999999999774


Q ss_pred             ccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259          176 RSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA  251 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~  251 (374)
                      .. .. . ......+++   .||||.++ +|+ |+||+++++++++.+....  ..++.+.+++.++..+++.   .++.
T Consensus       183 ~~-~~-~-~~~~~~~~vi~l~S~SK~~~l~Gl-RiG~iv~~~~~i~~~~~~~--~~~~~~~~~q~~~~~~l~~---~~~~  253 (337)
T PRK03967        183 GK-SL-I-GLIDEYPNLILLRTFSKAFGLAGI-RAGYAIANEEIIDALYRIK--PPFSLNILTMKIVRLALDH---YDLI  253 (337)
T ss_pred             cc-ch-H-HHHhhCCCEEEEecchHhhcchhh-hheeeecCHHHHHHHHhhc--CCCCCCHHHHHHHHHHHhC---HHHH
Confidence            21 11 1 111122333   38999999 899 9999999999888887543  3456788888888877752   1122


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---CCEEEEecCCC
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVRLTPPLS  328 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~lRi~~~~~  328 (374)
                      .+..+.....++.+.+.....     ..++.+.++|+.+          .+.+.|.++||.+++..   .+++||+   .
T Consensus       254 ~~~~~~~~~~r~~l~~~L~~~-----~~~~~~~~~~~~~----------~~~~~l~~~gi~v~~~~~~~~~~~Ri~---~  315 (337)
T PRK03967        254 EERIDYIIKERERVRRELGEY-----AYPSDANFLLLKL----------DAYDYLLENGIVVRKLSGRLEGHIRVT---V  315 (337)
T ss_pred             HHHHHHHHHHHHHHHHHhccC-----cCCCCCcEEEEhH----------HHHHHHHHCCEEEEeCCCCCCCeEEEe---c
Confidence            211111122222232222221     1234567777532          26788999999997652   5799999   4


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 017259          329 ISSNELQEGSKALHDVLE  346 (374)
Q Consensus       329 ~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.++.++++++|+.+.+
T Consensus       316 ~~~~~~~~l~~~l~~~~~  333 (337)
T PRK03967        316 GKREENDEFIKALKEIKE  333 (337)
T ss_pred             CCHHHHHHHHHHHHHHHH
Confidence            467888999999988876

>PLN02409 serine--glyoxylate aminotransaminase

Probab=99.91  E-value=3.9e-22  Score=188.32  Aligned_cols=309  Identities=17%  Similarity=0.123  Sum_probs=213.4

Q ss_pred             hHHHHHHHhcc-ccCcCCCCCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~-~~~~~~~~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +++.+++.+.. +..+....+.+++++++++++++.+   .+++++||+++++.++..+     .++|     |+|++.+
T Consensus        22 ~~V~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~~vi~~~~gt~a~~~a~~~~-----~~~G-----d~Vlv~~   91 (401)
T PLN02409         22 ERVLRAMNRPNEDHRSPAFPALTKELLEDVKYIFKTKSGTPFIFPTTGTGAWESALTNT-----LSPG-----DKVVSFR   91 (401)
T ss_pred             HHHHHHhcCCCCCCCCHHHHHHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhc-----CCCC-----CEEEEeC
Confidence            34555554422 2122233566778888888887543   5899999999999888776     5677     9999999


Q ss_pred             cCCCCcccccc-cccCCccccccCCCCCCCceeccC-----CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhH
Q 017259           78 GCFHGRTLAAI-SMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGY  150 (374)
Q Consensus        78 ~~yhg~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~  150 (374)
                      +.|++...... ...+            ..+..++.     .|+++++++++..+ +++++++++++.+++|.+.+    
T Consensus        92 ~~~~~~~~~~~~~~~g------------~~v~~v~~~~~~~~~~~~l~~~l~~~~~~~~k~v~~~~~~~~tG~~~~----  155 (401)
T PLN02409         92 IGQFSLLWIDQMQRLN------------FDVDVVESPWGQGADLDILKSKLRQDTNHKIKAVCVVHNETSTGVTND----  155 (401)
T ss_pred             CCchhHHHHHHHHHcC------------CceEEEECCCCCCCCHHHHHHHHhhCcCCCccEEEEEeecccccccCC----
Confidence            88766432111 1111            11111111     26899999998532 37899999999999999998    


Q ss_pred             HHHHHHH--HHhcCCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC---
Q 017259          151 LKAVRDL--CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE---  223 (374)
Q Consensus       151 l~~l~~l--~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~---  223 (374)
                      +++|.++  |+++|+++|+|++++ ++   . ...+...+..|++  +.+|+++++. ++|+++.++++.+.+.+..   
T Consensus       156 ~~~i~~l~~~~~~g~~~vvD~v~s-~g---~-~~id~~~~~~D~~~~s~~K~l~~P~-G~G~l~~~~~~~~~~~~~~~~~  229 (401)
T PLN02409        156 LAGVRKLLDCAQHPALLLVDGVSS-IG---A-LDFRMDEWGVDVALTGSQKALSLPT-GLGIVCASPKALEASKTAKSPR  229 (401)
T ss_pred             HHHHHHHHhhhccCcEEEEEcccc-cC---C-ccccccccCccEEEEcCccccCcCC-CcceeEECHHHHHHHhcCCCCC
Confidence            9999999  999999999999997 32   1 1222223345655  5569999877 8899999988877765321   


Q ss_pred             -------------CC-C-CCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEEEEe
Q 017259          224 -------------HG-S-TFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRG  283 (374)
Q Consensus       224 -------------~~-~-~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g  283 (374)
                                   .+ . .++++...+.+..++++.+.+.   ++.++.+++.+++++.|++++..   ...  .....+
T Consensus       230 ~~~~~~~~~~~~~~g~~~~~Tp~~~~~~al~~al~~~~~~G~e~i~~~~~~l~~~l~~~L~~~g~~---~~~~~~~~~s~  306 (401)
T PLN02409        230 VFFDWADYLKFYKLGTYWPYTPSIQLLYGLRAALDLIFEEGLENVIARHARLGEATRLAVEAWGLK---LCTKKPEWRSD  306 (401)
T ss_pred             eecCHHHHHHHHhcCCCCCCCccHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCe---eccCChhhccc
Confidence                         00 1 3456777788888888886543   56677777888888877765322   111  112234


Q ss_pred             eeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          284 LFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       284 ~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.++.++...   +..++.+.|. +.||.+..+    .+..|||+....++.+++..++++|.++++ ++
T Consensus       307 ~v~~~~~p~~~---~~~~l~~~l~~~~~i~i~~G~~~~~~~~~Rig~~g~~~~~~~~~~~~~~~~~l~-~~  373 (401)
T PLN02409        307 TVTAVVVPEGI---DSAEIVKNAWKKYNLSLGLGLNKVAGKVFRIGHLGNVNELQLLGALAGVEMVLK-DV  373 (401)
T ss_pred             ceEEEeCCCCC---CHHHHHHHHHHhCCEEEEcCCCcccCCEEEEcCCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            55667666544   6778888886 559999875    257899998888999999999999999998 65

>COG0399 WecE Predicted pyridoxal phosphate-dependent enzyme apparently involved in regulation of cell wall biogenesis [Cell envelope biogenesis, outer membrane]

Probab=99.91  E-value=2.3e-22  Score=182.67  Aligned_cols=303  Identities=17%  Similarity=0.227  Sum_probs=214.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++.++.+.    .+...+++++++++.|..+++.++|||.|+.++++++.    +.+|     |+||+++-+|.
T Consensus        19 ~~v~~vl~sg~i~~----G~~v~~FE~~~ae~~G~k~ava~~sgT~AL~laL~al~----ig~G-----DeVI~ps~Tfv   85 (374)
T COG0399          19 AAVQEVLKSGWLTG----GPFVRRFEQAFAEYLGVKYAVAVSSGTAALHLALLALA----IGPG-----DEVIVPSFTFV   85 (374)
T ss_pred             HHHHHHHHcCCeec----ChHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhcC----CCCC-----CEEEecCCchH
Confidence            56667777666654    67888999999999999999999999999999999885    6788     99999988874


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ..        .+.....+..|++.|+....++ |++.+|++|+   ++|++|+..+..   |..++    +++|.++|++
T Consensus        86 AT--------an~i~~~Ga~PVFvDid~~T~nid~~~ie~aIt---~~tKAIipVhl~---G~~~d----m~~i~~la~~  147 (374)
T COG0399          86 AT--------ANAVLLVGAKPVFVDIDPDTLNIDPDLIEAAIT---PRTKAIIPVHLA---GQPCD----MDAIMALAKR  147 (374)
T ss_pred             HH--------HHHHHHcCCeEEEEecCCcccCCCHHHHHHHcc---cCCeEEEEehhc---cCCCC----HHHHHHHHHH
Confidence            33        3334445555666677766665 8999999999   569999998887   44455    9999999999


Q ss_pred             cCCEEEEecccc-CCcccccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCCC------------
Q 017259          161 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG------------  222 (374)
Q Consensus       161 ~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~~------------  222 (374)
                      ||++||+|.+|+ |-.+.|+     ..|-..|+.+||    |.++.|-  +|.++.+ +++.++++..            
T Consensus       148 ~~l~vIEDaAqa~Ga~y~gk-----~vGt~Gd~~~fSF~~~K~ittgE--GGav~tnd~ela~k~~~lr~hG~~~~~~~~  220 (374)
T COG0399         148 HGLPVIEDAAQAHGATYKGK-----KVGSFGDIGAFSFHATKNLTTGE--GGAVVTNDEELAEKARSLRNHGLSRDAVFK  220 (374)
T ss_pred             cCCeEEEEcchhccCeecCc-----ccccccceEEEEecCCCCccccC--ceEEEeCCHHHHHHHHHHHHhCcCCCcccc
Confidence            999999999998 3333333     223344666666    8888553  3445554 5666665421            


Q ss_pred             ----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHH-HhCCCceeeEEEEeeeEEEEeccCCCch
Q 017259          223 ----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ-QQFPNYVKEVRGRGLFNAVEFDKTALPV  297 (374)
Q Consensus       223 ----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~  297 (374)
                          ..+++|-.+.+.++.+++.|+.+  +++.++.++..+++.+.|+.+. ..+|.........-.++.+.++..  +.
T Consensus       221 y~~~~~G~N~rm~~iqAAigl~QL~~l--~~~~~~R~~~a~~Y~~~l~~~~~~~~p~~~~~~~~~~~~~~i~~~~~--~~  296 (374)
T COG0399         221 YLHEELGYNYRLTEIQAAIGLAQLERL--DEINERRREIAQIYAEALKGLPGITLPPEPDGAVHAWHLYTILVDEE--GI  296 (374)
T ss_pred             ceeeecccccCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCccccCCCCCceeeeeeeEEEecCC--CC
Confidence                13445666777777788777765  4567778888888888887653 222211222222233444444443  22


Q ss_pred             hHHHHHHHHHHCCe----EeccCC-----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          298 SAYDICLKMKERGI----LAKPTH-----------------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       298 ~~~~~~~~l~~~Gi----~v~~~~-----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+.+.+.|.++||    +.+|.+                       ...+++-+...++++++++++++|++++.
T Consensus       297 ~R~~l~~~L~~~gi~~~~~~~P~~~~~~~~~~~~~~~~~lp~ae~~~~r~l~LP~~p~l~~~~~~~V~~~l~~~~~  372 (374)
T COG0399         297 SRDALMESLKEAGVGAVVYFRPLHLQPAYRQLGYFPEGDLPNAEDLSERILSLPLHPNLSEEDVDRVIEALKEVLG  372 (374)
T ss_pred             CHHHHHHHHHhCCCCceEEeeccccchhhhcccccccCCCchHHHHhhCeEEccCCCCCCHHHHHHHHHHHHHHhc
Confidence            68899999999954    444411                       35677777778999999999999999886

>PLN02855 Bifunctional selenocysteine lyase/cysteine desulfurase

Probab=99.91  E-value=1.4e-22  Score=193.14  Aligned_cols=290  Identities=13%  Similarity=0.156  Sum_probs=197.1

Q ss_pred             HHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           23 FPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        23 ~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      ++++.+.++++++.   +++++++|++++++.++..+... ..++|     ++|++..+.|++.......+....+    
T Consensus        78 ~~~~r~~la~~~~~~~~~~v~~t~g~t~al~~i~~~~~~~-~~~~g-----d~vl~~~~~~~s~~~~~~~~a~~~g----  147 (424)
T PLN02855         78 YELARKKVAAFINASTSREIVFTRNATEAINLVAYTWGLA-NLKPG-----DEVILSVAEHHSNIVPWQLVAQKTG----  147 (424)
T ss_pred             HHHHHHHHHHHcCCCCCCEEEEeCCHHHHHHHHHHHhhhh-cCCCc-----CEEEECCCccHHHHHHHHHHHHHcC----
Confidence            56788899998864   48999999999999888764210 14566     8999999887654333222111001    


Q ss_pred             CCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259          100 FGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus       100 ~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                           ..+..++.     .|++++++.++   +++++++++.++|++|.+.+    +++|.++|+++|+++++|++|+ +
T Consensus       148 -----~~v~~v~~~~~~~~~~~~l~~~i~---~~t~lv~i~~~~n~tG~~~~----~~~I~~l~~~~g~~vivD~a~~-~  214 (424)
T PLN02855        148 -----AVLKFVGLTPDEVLDVEQLKELLS---EKTKLVATHHVSNVLGSILP----VEDIVHWAHAVGAKVLVDACQS-V  214 (424)
T ss_pred             -----CEEEEEecCCCCCcCHHHHHHHhc---cCceEEEEeCccccccccCC----HHHHHHHHHHcCCEEEEEhhhh-c
Confidence                 11111111     27889998886   57899999999999999998    9999999999999999999996 2


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCCCC
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFGGN  231 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~  231 (374)
                      +..    .++.....+|++  +++| +.|+. ++|+++.++++.+.+.+...+.                     ..+.+
T Consensus       215 g~~----~~~~~~~~~d~~~~s~~K-~~gp~-G~G~l~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~GT~~  288 (424)
T PLN02855        215 PHM----PVDVQTLGADFLVASSHK-MCGPT-GIGFLWGKSDLLESMPPFLGGGEMISDVFLDHSTYAPPPSRFEAGTPA  288 (424)
T ss_pred             CCc----CCCchhcCCCEEEeeccc-ccCCC-ccEEEEEchhhhhcCCCEecCCCceeeeecCccccCCChhhccCCChH
Confidence            211    122223445765  6669 44444 6789999988877765431110                     11235


Q ss_pred             HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee------EEEEeeeEEEEeccCCCchhHHHH
Q 017259          232 PLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE------VRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      ..+.+++.++++.+.+.   .+.++.++..+++++.|+++    +++...      ...++.++.|.++..    ...++
T Consensus       289 ~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~L~~~----~g~~i~~~~~~~~~~r~~~v~~~~~~~----~~~~v  360 (424)
T PLN02855        289 IGEAIGLGAAIDYLSEIGMDRIHEYEVELGTYLYEKLSSV----PGVRIYGPKPSEGVGRAALCAFNVEGI----HPTDL  360 (424)
T ss_pred             HHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCcccccCcccEEEEEECCc----CHHHH
Confidence            55666677777766442   45566666666666666543    222111      112356777777643    57789


Q ss_pred             HHHHHHC-CeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          303 CLKMKER-GILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       303 ~~~l~~~-Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .+.|.++ ||.++.+.            ++++|++++..+|++|++++++.|+++++ .++
T Consensus       361 ~~~L~~~~gI~v~~g~~c~~~~~~~~g~~~~iRiS~~~ynt~~di~~l~~~l~~~~~-~~~  420 (424)
T PLN02855        361 STFLDQQHGVAIRSGHHCAQPLHRYLGVNASARASLYFYNTKEEVDAFIHALKDTIA-FFS  420 (424)
T ss_pred             HHHhcccCCEEEechhhhhHHHHHHhCCCCeEEEEeccCCCHHHHHHHHHHHHHHHH-HHH
Confidence            9999887 99998542            46899999999999999999999999987 653

>KOG1360 consensus 5-aminolevulinate synthase [Coenzyme transport and metabolism]

Probab=99.91  E-value=5.4e-22  Score=174.71  Aligned_cols=307  Identities=19%  Similarity=0.266  Sum_probs=224.9

Q ss_pred             hHHHHHHHhccc-cC---c-CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL-SS---R-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~---~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +||.+.+++... .+   + .+.+....+|+++|+++.+.+..++.+|+--|++..+..+.+   ..+|     .+|...
T Consensus       192 ~A~~~tl~~hG~GAGGTRNIsG~s~~hv~LE~eLA~LHqK~aALlFsSCfVANDstLftLak---~lpg-----cei~SD  263 (570)
T KOG1360|consen  192 DAMHDTLDRHGAGAGGTRNISGHSKHHVRLEAELADLHQKEAALLFSSCFVANDSTLFTLAK---KLPG-----CEIFSD  263 (570)
T ss_pred             HHHHHHHHHcCCCcCCccccCCCCchhhhHHHHHHHHhcCcceeeeeeeeeccchHHHHHHH---HCCC-----cEEecc
Confidence            577777776322 11   1 266788999999999999999999999999999999988854   4456     666655


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      ++. |..-...+-            --...-..+.+||++.|++.|++.+ +.++.|-+|+++++.|.++|    +++|+
T Consensus       264 ~gN-HASMI~GIr------------ns~v~K~IFrHND~~hL~~lL~~~~~svPKivAFEtVhSM~Gavcp----leelc  326 (570)
T KOG1360|consen  264 EGN-HASMIQGIR------------NSRVPKHIFRHNDLDHLEQLLQSSPKSVPKIVAFETVHSMDGAVCP----LEELC  326 (570)
T ss_pred             ccc-hHHHHHHhh------------hcCCcceeeccCCHHHHHHHHHhCCCCCCceEEEeeeeccCCCcCC----HHHHH
Confidence            554 433211111            1112344567789999999999865 45899999999999999999    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCcEE--Eeccccc--CCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALG--GGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d~~--s~sK~~~--~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      +++++||.+-.+||+|+ | +|..|.. ..+..|+  ..|++  +++|++|  ||     |+.+...+.+.++....+..
T Consensus       327 Dvah~yGAiTFlDEVHAVGlYG~rGaG-vgerdGvm~kvDiIsGTLgKafGcVGG-----YIAat~~LvDmiRSyAaGFI  400 (570)
T KOG1360|consen  327 DVAHKYGAITFLDEVHAVGLYGPRGAG-VGERDGVMHKVDIISGTLGKAFGCVGG-----YIAATRKLVDMIRSYAAGFI  400 (570)
T ss_pred             HHHHHhCceeeeehhhhhccccCCCCC-ccccCCcchhhhhcccchhhhcccccc-----eehhhhhHHHHHHHhcCceE
Confidence            99999999999999998 5 3444443 2233444  33555  7889998  44     48888899999887766655


Q ss_pred             C--CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          228 F--GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       228 ~--~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      |  +.++..++.++++.+++..+   .+++..+++.+++++.|.+++  +| +   .+...+++-+.+.+..   ...++
T Consensus       401 FTTSLPP~vl~GAleaVr~lk~~eg~~lR~~hqrnv~~~kq~l~~~G--iP-V---i~~pSHIiPv~vgda~---l~~~~  471 (570)
T KOG1360|consen  401 FTTSLPPMVLAGALEAVRILKSEEGRVLRRQHQRNVKYVKQLLMELG--IP-V---IPNPSHIIPVRVGDAA---LAKQA  471 (570)
T ss_pred             EecCCChHHHHhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHcC--Cc-c---cCCCcceeeeeccCHH---HHHHH
Confidence            4  66888899999999988664   455666667777777777664  22 2   1223455555554433   57788


Q ss_pred             HHHHHH-CCeEecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMKE-RGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~~-~Gi~v~~-------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.|++ .||++..       .+..-+||+|...+|++-++.+++.|..+++ ++
T Consensus       472 sd~Li~~h~iYvQaINyPTV~rG~E~LRiaPTP~HT~~mm~~lv~~l~~vw~-~v  525 (570)
T KOG1360|consen  472 SDILISKHNIYVQAINYPTVARGTERLRIAPTPHHTPQMMNILVNALLDVWN-EV  525 (570)
T ss_pred             HHHHHHhcCeEEEeccCCcccccceeeecCCCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            998885 4898842       3567899999999999999999999999998 54

>KOG0634 consensus Aromatic amino acid aminotransferase and related proteins [Amino acid transport and metabolism]

Probab=99.91  E-value=1.5e-21  Score=174.05  Aligned_cols=304  Identities=15%  Similarity=0.170  Sum_probs=209.0

Q ss_pred             CCCcHHHHHHHHhcccC--------CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           19 YNDKFPVFAERLTSMFG--------YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~--------~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .+...-+|...+.+..+        .+ .++.|+|.+.+++.+++++     +++|     |.|++..++|.+......+
T Consensus        98 ~s~G~peLl~fik~h~~~~ih~p~~~~wdiiit~G~t~~l~~~l~~~-----~N~g-----d~vlie~~ty~~AL~s~~a  167 (472)
T KOG0634|consen   98 QSSGIPELLLFIKDHNRPTIHAPPYKNWDIIITNGNTDGLFKVLRTL-----INRG-----DHVLIEEYTYPSALQSMEA  167 (472)
T ss_pred             cccCcHHHHHHHHHhccccccCCCCCCceEEEecCCchHHHHHHHHh-----hcCC-----CceEEecccchHHHHhccc
Confidence            34444455555555432        12 6899999999999999999     6777     9999999999765544443


Q ss_pred             ccCCccccccCCCCCCCceeccCC----CHHHHHHHHHhcC------CcEEEEEEcc-ccCCCCcccCChhHHHHHHHHH
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKESG------DQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~~------~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      .+             ..+..++.+    ++|.|++.+....      +++.++.+-| .+||||+.. +.+..++|.+||
T Consensus       168 ~g-------------v~~ipv~md~~Gi~pE~l~~il~~w~~~~~k~~~p~vlYTIPTgqNPTG~tl-s~errk~iy~LA  233 (472)
T KOG0634|consen  168 LG-------------VKIIPVKMDQDGIDPESLEEILSNWKPGSYKKPKPHVLYTIPTGQNPTGNTL-SLERRKKIYQLA  233 (472)
T ss_pred             cC-------------ceEEeccccCCCCCHHHHHHHHhcCCcccccCCCCeEEEeCcCCCCCCCCcc-CHHHHHHHHHHH
Confidence            33             122222222    6899999988532      4478888887 588888888 899999999999


Q ss_pred             HhcCCEEEEeccccCCcccc---c------Ccc---------cccC--CCCCcEE---EecccccCCccchhhheeCHHH
Q 017259          159 SKYNILMIADEIQSGLARSG---R------MLA---------SDWE--EVRPDMV---ILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g---~------~~~---------~~~~--~~~~d~~---s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      ++||++||+||.|.-+.+..   .      .+.         -...  +....++   ||||-+++|+ |+||+.+++.+
T Consensus       234 rKyDfLIVeDdpYy~Lq~~~y~~~~~~~~p~~s~~~f~k~l~~sflslDtdGrVIr~dSFSKiiaPGl-RlG~it~~~~~  312 (472)
T KOG0634|consen  234 RKYDFLIVEDDPYYFLQMNTYNPSLELESPAHSSSMFLKSLVPSFLSLDTDGRVIRNDSFSKIIAPGL-RLGWITGNSLF  312 (472)
T ss_pred             HHcCEEEEecCccceeeccccCCCccccCccccHHHHHHhhcCCcccccccccEEeccchhhhhcCcc-eeEEeecCHHH
Confidence            99999999999997432221   0      001         0111  1122233   9999999999 99999999988


Q ss_pred             HhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHH----HHHHHHhCCCcee--eEEEEeeeEEEE
Q 017259          216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH----LFKIQQQFPNYVK--EVRGRGLFNAVE  289 (374)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~~~~~~--~~~~~g~~~~~~  289 (374)
                      ++++.......+.+++.+.+...-+.++.+..+++.+.+++.+..+.++    +..+...+|..+.  ..+..|.|+|+.
T Consensus       313 l~ril~~ae~~t~~pSg~sq~iv~a~l~~wgqeG~~~wi~~l~~~Yt~Rrn~~l~Al~kylp~~~~~~~~P~aGmFiwv~  392 (472)
T KOG0634|consen  313 LKRILDLAEVATSGPSGFSQGIVYAMLKRWGQEGFLRWIQHLRSSYTERRNALLSALDKYLPKSVCEYHPPKAGMFIWVE  392 (472)
T ss_pred             HHHHhhhcceeecCcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCeeEEecCCcceEEEEE
Confidence            8888766666677788899998888898888775555555544433333    2333334454322  345569999999


Q ss_pred             ec-------cCCCchhHHHHHHHHHHCCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          290 FD-------KTALPVSAYDICLKMKERGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       290 ~~-------~~~~~~~~~~~~~~l~~~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ++       +.- .+-.+.+...+.++||.+.++.           +-++|+++++. +.|+++++++++..+++ +..
T Consensus       393 i~~~~~~~~~~i-~q~~e~i~~~~vk~gV~~v~G~~F~v~p~~s~~kiffRls~a~a-~~e~l~~g~~rf~~~ik-e~f  468 (472)
T KOG0634|consen  393 IPYINFDTKKSI-NQIEEIIFIKAVKNGVKLVCGSWFMVDPESSWSKIFFRLSIAFA-EPEKLDEGIERFGSVIK-EHF  468 (472)
T ss_pred             ecccccccccch-HHHHHHHHHHHHHCCeEEecCceeEEcCccCCCcceEEEEeecC-CHHHHHHHHHHHHHHHH-HHh
Confidence            86       211 1123345556778899887752           23999997755 67799999999999998 543

>PRK13238 tnaA tryptophanase/L-cysteine desulfhydrase, PLP-dependent; Provisional

Probab=99.90  E-value=4.2e-21  Score=182.76  Aligned_cols=316  Identities=16%  Similarity=0.145  Sum_probs=203.0

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..++...+|++.++++++.+++++|+||++|+..++.++     +++|     | |++.+|+|..+.......++.+...
T Consensus        75 ~~~~g~~~Lreaia~~~~~~~vv~t~ggt~A~~~~~~al-----l~pG-----D-Vii~~p~~~~~~~~i~~~G~~~v~v  143 (460)
T PRK13238         75 AGSRSYYRLEDAVKDIFGYPYTIPTHQGRAAEQILFPVL-----IKKG-----D-VVPSNYHFDTTRAHIELNGATAVDL  143 (460)
T ss_pred             CCCCCHHHHHHHHHHHhCCCcEEECCCHHHHHHHHHHHh-----CCCC-----C-EEccCCcccchHHHHHHcCCEEEEE
Confidence            346788999999999999999999999999999998877     6777     8 8888888765543333333333222


Q ss_pred             ccCCCCCCCceeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           98 RGFGPLLPGHLKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ..-...... ..-++   -|+++|++.++.++ ++++++++++++|++|+.+.+.+.+++|.++|++||++||+|+++..
T Consensus       144 ~~~~~~~~~-~~~~f~g~id~e~Le~~i~~~~~~~tk~Ivl~~p~NptGG~v~s~~~l~~I~~ia~~~gi~li~Daa~~~  222 (460)
T PRK13238        144 VIDEALDTG-SRHPFKGNFDLEKLEALIEEVGAENVPFIVMTITNNSAGGQPVSMANLRAVYEIAKKYGIPVVIDAARFA  222 (460)
T ss_pred             ecccccccc-ccccccCCcCHHHHHHHHhhcCCCceeEEEEecCCCCCCCcCCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence            110000000 00011   28999999998653 47999999999999886666899999999999999999999998851


Q ss_pred             ----Cccc---cc-Ccccc-c---CCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCC---C-CCCCCCCHHH
Q 017259          174 ----LARS---GR-MLASD-W---EEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGE---H-GSTFGGNPLA  234 (374)
Q Consensus       174 ----~~~~---g~-~~~~~-~---~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~---~-~~~~~~~~~~  234 (374)
                          |...   +. ..... .   ..-..|+.++|  |...++.  +|+++.+ +++++.++...   . ..+|++....
T Consensus       223 e~a~f~~~~e~g~~~~si~~i~~~~~s~~D~~~~Sg~K~g~~~~--GG~i~~~d~~l~~~~~~~~~~~~g~~t~~g~~~~  300 (460)
T PRK13238        223 ENAYFIKQREPGYKDKSIKEIAREMFSYADGLTMSAKKDAMVNI--GGLLCFRDEDLFTECRTLCILYEGFPTYGGLAGR  300 (460)
T ss_pred             hhhhhhhhccccccCCCHHHHhhhhcccCcEEEEecccCCCCcc--eeEEEcChHHHHHHhhhcccccCCcccccCcHHH
Confidence                1110   10 10100 0   01124666666  3222211  2445556 57888876542   2 3367775555


Q ss_pred             -HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHHHH-
Q 017259          235 -SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMK-  307 (374)
Q Consensus       235 -~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~-  307 (374)
                       +.|+..+++...++++.+...++++++.+.|++.+     +....+..|+++++++.....     +....+++..|. 
T Consensus       301 ~~~Ala~~l~e~~~~~~~~~~~~~~~~l~~~L~~~G-----~~~~~p~Gg~~v~~d~~~~~~~~~~~~~~~~~~a~~L~~  375 (460)
T PRK13238        301 DMEALAVGLYEGMDEDYLAYRIGQVEYLGEGLEEAG-----VPIQTPAGGHAVFVDAGKFLPHIPAEQFPAQALACELYL  375 (460)
T ss_pred             HHHHHHhhHHHhhChHHHHHHHHHHHHHHHHHHHCC-----CCeEccCCceEEEEEchhcCCCCCCCCCchHHHHHHHHH
Confidence             55555566654455566666666788888887642     222233445666666643210     113467888877 


Q ss_pred             HCCeEeccCC-----------------CCEEEEecCC-CCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          308 ERGILAKPTH-----------------DTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       308 ~~Gi~v~~~~-----------------~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      +.||.+.|.+                 .+.+|++++. ..+.++++.+.++|+.+.+ ....+.
T Consensus       376 e~GV~~~~~~~f~~~~~~~~~~~~~~~~~~~Rla~~rr~~~~~~~~~~~~~l~~~~~-~~~~~~  438 (460)
T PRK13238        376 EAGIRGVEIGSLLLGRDPKTGEQLPAPAELLRLAIPRRVYTQSHMDYVAEALKAVKE-NRESIK  438 (460)
T ss_pred             HcCeeeecccceecccCCCCccccCCccceEEEecccccCCHHHHHHHHHHHHHHHH-hHhhcC
Confidence            5599886632                 4799998663 4499999999999999886 444433

>KOG0256 consensus 1-aminocyclopropane-1-carboxylate synthase, and related proteins [Signal transduction mechanisms]

Probab=99.90  E-value=1.1e-21  Score=173.50  Aligned_cols=292  Identities=16%  Similarity=0.142  Sum_probs=199.5

Q ss_pred             CCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ....+++++-+.++.      .+++++.++|++.|++..+..+     ..+|     |..+++.|.|.|.......-++ 
T Consensus       124 ~~frqa~A~Fm~~~r~~~v~fdP~~~Vv~~G~T~ane~l~fcL-----adpg-----dafLvPtPyY~gfdrdl~~rTg-  192 (471)
T KOG0256|consen  124 PSFRQAVAEFMERARGNRVKFDPERVVVTNGATSANETLMFCL-----ADPG-----DAFLVPTPYYPGFDRDLRWRTG-  192 (471)
T ss_pred             hHHHHHHHHHHHHHhCCCCccCccceEEecccchhhHHHHHHh-----cCCC-----ceeeecCCCCCcccccceeccC-
Confidence            444555666555543      4678999999999999888877     5677     9999999999887555444433 


Q ss_pred             ccccccCCCCCCCceeccC--C-------CHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           94 NEAIRGFGPLLPGHLKVDF--G-------DITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~--~-------d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                                   +..+|+  .       +.+++|+++++   .+.+++++++.+++||-|... +++.+..+.+++.++
T Consensus       193 -------------veivpv~c~Ss~~f~itv~alE~A~~~A~~~~~kVkGvlitNPsNPLG~~~-~~e~L~~ll~Fa~~k  258 (471)
T KOG0256|consen  193 -------------VEIVPVHCSSSNGFQITVEALEAALNQARKLGLKVKGVLITNPSNPLGTTL-SPEELISLLNFASRK  258 (471)
T ss_pred             -------------ceEEEEEeecCCCccccHHHHHHHHHHHHHhCCceeEEEEeCCCCCCCCcc-CHHHHHHHHHHHhhc
Confidence                         222222  1       58889988885   346899999999999999888 899999999999999


Q ss_pred             CCEEEEeccccCCcccccCccc--cc---CCCCCc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCC
Q 017259          162 NILMIADEIQSGLARSGRMLAS--DW---EEVRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGG  230 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~--~~---~~~~~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~  230 (374)
                      +|.+|+||+|++-.+....|..  +.   ....+|    +.++||-+| +|+ |.|.+.. ++.+..+.+....  -+..
T Consensus       259 niHvI~DEIya~sVF~~~~F~Sv~ev~~~~~~~~~rvHivyslSKD~GlpGf-RvGviYS~ne~VvsaA~kmss--f~~v  335 (471)
T KOG0256|consen  259 NIHVISDEIYAGSVFDKSEFRSVLEVRKDPHLDPDRVHIVYSLSKDFGLPGF-RVGVIYSNNEDVVSAATKMSS--FGLV  335 (471)
T ss_pred             ceEEEeehhhcccccCccCceEHHHHhhccccCCCcEEEEEEeccccCCCce-EEEEEEecChHHHHHHHHHhh--ccCC
Confidence            9999999999962222222221  11   112444    349999999 799 9999886 5566666654222  2233


Q ss_pred             CHHHHHHHHHHHHH--Hhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---chhHHHH
Q 017259          231 NPLASAVAIASLDV--IRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDI  302 (374)
Q Consensus       231 ~~~~~~aa~~al~~--~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~  302 (374)
                      ++..|.-+...|..  +.+.   +-.++++.+.+++.+.|+++     ++..-....|.|+|+++..--.   .+...++
T Consensus       336 Ss~tQ~~la~LLSD~~f~~~yl~en~~Rl~~rh~~~~~gLk~l-----gI~cl~s~AGlF~wvDlr~lL~s~tfe~El~L  410 (471)
T KOG0256|consen  336 SSQTQYLLASLLSDEEFTREYLRENNKRLRIRHRYIVEGLKAL-----GIPCLKSNAGLFCWVDLRKLLTSLTFEGELEL  410 (471)
T ss_pred             cHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhhHHhc-----CCceeecCCeeEEEEEhHHhcCcCChHHHHHH
Confidence            55555544444332  1111   23456666667777777766     3444456679999998744211   1234567


Q ss_pred             HHHHHHC-CeEeccCC------CCEEEEecCCCCCHH-HHHHHHHHHHHHHh
Q 017259          303 CLKMKER-GILAKPTH------DTIVRLTPPLSISSN-ELQEGSKALHDVLE  346 (374)
Q Consensus       303 ~~~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e-~i~~~~~~l~~~~~  346 (374)
                      .+.++++ ++.++|+.      ++|+|++  +++..+ .++-++++|+..+.
T Consensus       411 w~~i~~~vklnlSpG~s~~C~EpGWFRvc--FAn~~~~t~~~am~Ri~~~~~  460 (471)
T KOG0256|consen  411 WERILDNVKLNLSPGSSCHCHEPGWFRVC--FANMSEETLEVAMRRLKQFLD  460 (471)
T ss_pred             HHHHHHhhccccCCCCcceecCCCeEEEE--eccCCHHHHHHHHHHHHHHHH
Confidence            7777777 99999873      8999999  445444 45559999998886

>COG1104 NifS Cysteine sulfinate desulfinase/cysteine desulfurase and related enzymes [Amino acid transport and metabolism]

Probab=99.90  E-value=3.2e-22  Score=180.05  Aligned_cols=298  Identities=17%  Similarity=0.216  Sum_probs=207.1

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcc-cccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWG-YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~-~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ...++-++++++..|.  ++|+||+||||++++|++.+.... ..++|     .+||+..-..+.....+..+ ...++.
T Consensus        44 ~~ve~AR~~iA~llga~~~eIiFTSG~TEsnNlaI~g~~~a~~~~~~~-----~HIIts~iEH~aVl~~~~~L-e~~g~~  117 (386)
T COG1104          44 KAVEEAREQIAKLLGADPEEIIFTSGATESNNLAIKGAALAYRNAQKG-----KHIITSAIEHPAVLNTCRYL-ERQGFE  117 (386)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEecCCcHHHHHHHHhhHHhhhcccCC-----CeEEEcccccHHHHHHHHHH-HhcCCe
Confidence            3455677788887754  589999999999999999753221 12234     88888877755544444444 222222


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ..+-|...+...    |+++|+++|+   ++|.+|-+...+|.+|.+.|    +++|.++|+++++++++|.+|+ +|+ 
T Consensus       118 Vtyl~V~~~G~v----~~e~L~~al~---~~T~LVSim~aNnE~G~IQp----I~ei~~i~k~~~i~fHvDAvQa-~Gk-  184 (386)
T COG1104         118 VTYLPVDSNGLV----DLEQLEEALR---PDTILVSIMHANNETGTIQP----IAEIGEICKERGILFHVDAVQA-VGK-  184 (386)
T ss_pred             EEEeCCCCCCeE----cHHHHHHhcC---CCceEEEEEecccCeeeccc----HHHHHHHHHHcCCeEEEehhhh-cCc-
Confidence            222222222222    8999999998   68999999999999999999    9999999999999999999997 432 


Q ss_pred             ccCcccccCCCCCcEEEecc-cccCCccchhhheeCHHHHhhcCCCCCCCC-------CCCCHHHHHHHHHHHHHHhhh-
Q 017259          178 GRMLASDWEEVRPDMVILGK-ALGGGVIPVSAVLADKEVMLCIQPGEHGST-------FGGNPLASAVAIASLDVIRDE-  248 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~sK-~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~aa~~al~~~~~~-  248 (374)
                         ...+......|++|||- .++|.- ++|+++.++.+  .+.+..++..       -+.|..+.++...|++...++ 
T Consensus       185 ---ipi~~~~~~vD~ls~SaHK~~Gpk-GiGaLyv~~~~--~~~p~i~GGgQE~g~RsGTenv~~Ivg~~~A~~~a~~~~  258 (386)
T COG1104         185 ---IPIDLEELGVDLLSFSAHKFGGPK-GIGALYVRPGV--RLEPLIHGGGQERGLRSGTENVPGIVGFGKAAEIAVEEL  258 (386)
T ss_pred             ---eeccccccCcceEEeehhhccCCC-ceEEEEECCCC--ccCceeccCcCCCCCCCCCccHHHHHHHHHHHHHHHHHH
Confidence               23344444579999983 355544 67888776543  3333222221       233666666666666654332 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCce--ee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------
Q 017259          249 -KLAERSAHLGEELRQHLFKIQQQFPNYV--KE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------  317 (374)
Q Consensus       249 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------  317 (374)
                       ....+++..++++.+.|++..   |.+.  .. .+..++.+.+.++.-    .++.+.-.|..+||.++.+.       
T Consensus       259 ~~~~~~~~~lr~~l~~~l~~~~---p~~~~~g~~~~rlP~~~~~~f~gv----~gE~ll~~L~~~gI~vStGSACsS~~~  331 (386)
T COG1104         259 EEENARLRKLRDRLEDGLLEII---PDVYLNGDDEPRLPNILNFSFPGV----EGESLLLALDLAGIAVSTGSACSSGSL  331 (386)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcC---CcEEEcCCcccCCCCeEEEEeCCC----cHHHHHHhccccCeEEeccccccCCCC
Confidence             456777777888888777652   2221  11 244577777777765    68888888888999997641       


Q ss_pred             ----------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          318 ----------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       318 ----------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                                      .+.+||+++..++++|++++++.|.++++ .++.
T Consensus       332 ~pShVL~AmG~~~e~a~~siR~S~g~~tt~eei~~~~~~l~~~i~-~lr~  380 (386)
T COG1104         332 EPSHVLRAMGISEELAHGSIRFSLGRFTTEEEIDAAAEALKEIIK-RLRE  380 (386)
T ss_pred             CccHHHHHcCCChHHhCccEEEEcCCCCCHHHHHHHHHHHHHHHH-HHhh
Confidence                            48999999999999999999999999998 7644

>TIGR01976 am_tr_V_VC1184 cysteine desulfurase family protein, VC1184 subfamily

Probab=99.90  E-value=5.1e-22  Score=187.98  Aligned_cols=291  Identities=11%  Similarity=0.043  Sum_probs=184.4

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +..+++++.+++++|.+  ++++++|+++++..++..+...  .++|     |+|++.++.|++............+...
T Consensus        60 ~~~~~l~~~ia~~~~~~~~~v~~~~~~t~~l~~~~~~~~~~--~~~g-----d~vl~~~~~~~s~~~~~~~~~~~~g~~~  132 (397)
T TIGR01976        60 QVVDDAREAVADLLNADPPEVVFGANATSLTFLLSRAISRR--WGPG-----DEVIVTRLDHEANISPWLQAAERAGAKV  132 (397)
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCCHHHHHHHHHHHHHhc--CCCC-----CEEEEcCCchHhHHHHHHHHHHhcCCEE
Confidence            34678999999988653  6999999999998777766321  4567     9999999887654322211100001100


Q ss_pred             cCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           99 GFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        99 ~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      .+.+... +.    ..|+++++++++   +++++++++.++|++|.+.+    +++|.++|++||+++|+|++|+ .+  
T Consensus       133 ~~~~~~~~~~----~~~~~~l~~~i~---~~~~lv~i~~~~n~tG~~~~----~~~i~~~~~~~~~~~ivD~a~~-~~--  198 (397)
T TIGR01976       133 KWARVDEATG----ELHPDDLASLLS---PRTRLVAVTAASNTLGSIVD----LAAITELVHAAGALVVVDAVHY-AP--  198 (397)
T ss_pred             EEEeccccCC----CcCHHHHHHhcC---CCceEEEEeCCCCCCCccCC----HHHHHHHHHHcCCEEEEehhhh-cc--
Confidence            0001100 00    026889988886   57899999999999999998    9999999999999999999986 21  


Q ss_pred             ccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCC----------CCCCHHHHHHHHHHHHHH
Q 017259          178 GRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST----------FGGNPLASAVAIASLDVI  245 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~aa~~al~~~  245 (374)
                       .. ..+.....+|++  |++|.+|  . ++|++++++++.+.+.+......          .+.+....++..++++.+
T Consensus       199 -~~-~~~~~~~~~d~~~~s~~K~~g--~-~~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~gt~~~~~~~~l~~al~~~  273 (397)
T TIGR01976       199 -HG-LIDVQATGADFLTCSAYKFFG--P-HMGILWGRPELLMNLPPYKLTFSYDTGPERFELGTPQYELLAGVVAAVDYL  273 (397)
T ss_pred             -cc-CCCHHHcCCCEEEEechhhcC--C-ceEEEEEcHHHHhhCCCccccCccCCCcchhcCCCCCHHHHHHHHHHHHHH
Confidence             11 112222345655  6679874  5 78899999888877765322111          123444555666666665


Q ss_pred             hhhc-------------HHHHHHHHHHHHHHHHHHHHHhCCCcee--e--EEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          246 RDEK-------------LAERSAHLGEELRQHLFKIQQQFPNYVK--E--VRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       246 ~~~~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      .+.+             ..+.++++...+.+.+.+....++++..  .  ....+.++.+.++..    +..++.++|.+
T Consensus       274 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~  349 (397)
T TIGR01976       274 AGLGESANGSRRERLVASFQAIDAYENRLAEYLLVGLSDLPGVTLYGVARLAARVPTVSFTVHGL----PPQRVVRRLAD  349 (397)
T ss_pred             HHhCcccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhcCCCEEEeCCCCccCCCceEEEEeCCc----CHHHHHHHHHH
Confidence            4322             1233333333333333332222221111  1  112455666655432    57789999999


Q ss_pred             CCeEeccC---------------CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          309 RGILAKPT---------------HDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       309 ~Gi~v~~~---------------~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      +||.++.+               ..+++||+++..+|++|+++++++|
T Consensus       350 ~gI~v~~~~~~~~~~~~~~~~~~~~~~iRis~~~~~t~~di~~l~~~l  397 (397)
T TIGR01976       350 QGIDAWAGHFYAVRLLRRLGLNDEGGVVRVGLAHYNTAEEVDRLLEAL  397 (397)
T ss_pred             CCeEEEeCccchHHHHHHhCCCCCCCeEEEEeeccCCHHHHHHHHHhC
Confidence            99999864               2468999999999999999999864

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family (pfam00266). The most closely related characterized proteins are active as cysteine desulfurases, selenocysteine lyases, or both; some are involved in FeS cofactor biosynthesis and are designated NifS. An active site Cys residue present in those sequences, in motifs resembling GHHC or GSAC, is not found in this family. The function of members of this family is unknown, but seems unlike to be as an aminotransferase.

>PRK07908 hypothetical protein; Provisional

Probab=99.90  E-value=3.9e-22  Score=185.39  Aligned_cols=274  Identities=18%  Similarity=0.136  Sum_probs=177.0

Q ss_pred             CcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ....++.+.+++++  ..+++++|+|+++++..+++ +.      +      +.+++..|+|......+...+.....  
T Consensus        58 ~g~~~lr~aia~~~~~~~~~I~it~Ga~~al~~~~~-l~------~------~~viv~~P~y~~~~~~~~~~G~~i~~--  122 (349)
T PRK07908         58 EDERRARAAVAARHGRTPDEVLLLAGAAEGFALLAR-LR------P------RRAAVVHPSFTEPEAALRAAGIPVHR--  122 (349)
T ss_pred             cchHHHHHHHHHHhCcChhhEEECCCHHHHHHHHHh-cC------C------CeEEEeCCCChHHHHHHHHcCCEEEe--
Confidence            35667888888876  45689999999999988776 31      1      45667889987655433332211110  


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                        .+...+..    .|+++    ++   ++++++++.+++||+|.+.+    .++|.++|++ +.++|+||+|+++. .+
T Consensus       123 --v~~~~~~~----~d~~~----l~---~~~~~i~l~np~NPTG~~~~----~~~l~~l~~~-~~~iIvDe~y~~~~-~~  183 (349)
T PRK07908        123 --VVLDPPFR----LDPAA----VP---DDADLVVIGNPTNPTSVLHP----AEQLLALRRP-GRILVVDEAFADAV-PG  183 (349)
T ss_pred             --eccCcccC----cChhH----hc---cCCCEEEEcCCCCCCCCCcC----HHHHHHHHhc-CCEEEEECcchhhc-cC
Confidence              01100000    13443    33   36788888888999999996    6677888864 78888999998763 23


Q ss_pred             cCcccccCCCCCcEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hhcHH
Q 017259          179 RMLASDWEEVRPDMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---DEKLA  251 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~---~~~~~  251 (374)
                      .......... ++++   ||||.++ +|+ |+||+++++++++.+.....  .+..+++.+.++.+.++...   -.+.+
T Consensus       184 ~~~~l~~~~~-~~~i~i~S~SK~~~l~Gl-RiG~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~  259 (349)
T PRK07908        184 EPESLAGDDL-PGVLVLRSLTKTWSLAGL-RVGYALGAPDVLARLTRGRA--HWPVGTLQLEAIAACCAPRAVAEAAADA  259 (349)
T ss_pred             CccccccccC-CCEEEEeecccccCCccc-eeeeeecCHHHHHHHHhcCC--CCCccHHHHHHHHHHhcccchHHHHHHH
Confidence            3222211111 2332   8899998 899 99999999998888875322  34556666665544443100   01234


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEec
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTP  325 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~  325 (374)
                      ++++++++++.+.|++.     ++....+..+.++|+.+++      ..++.+.|.++||.+.++.      .+++||++
T Consensus       260 ~~~~~~r~~l~~~L~~~-----~~~~~~p~~g~~~~~~~~~------~~~~~~~l~~~gI~v~~g~~f~~~~~~~vRis~  328 (349)
T PRK07908        260 ARLAADRAEMVAGLRAV-----GARVVDPAAAPFVLVRVPD------AELLRKRLRERGIAVRRGDTFPGLDPDYLRLAV  328 (349)
T ss_pred             HHHHHHHHHHHHHHHhC-----CcEeccCCCceEEEEECCc------HHHHHHHHHhCCEEEEECCCCCCCCCCeEEEEe
Confidence            45555555555555543     2222223568888887763      4688889999999998752      57999994


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 017259          326 PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         .+++++++++++|++++.
T Consensus       329 ---~~~~~~~~l~~al~~~~~  346 (349)
T PRK07908        329 ---RPRAEVPVLVQALAEILK  346 (349)
T ss_pred             ---CCCccHHHHHHHHHHHHh
Confidence               578899999999998875

>TIGR02379 ECA_wecE TDP-4-keto-6-deoxy-D-glucose transaminase

Probab=99.90  E-value=6.5e-22  Score=184.50  Aligned_cols=303  Identities=16%  Similarity=0.137  Sum_probs=201.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.+..++.+.   ..+...+++++++++++.+++++++||++|+..++.++.    .++|     |+|+++.++|.
T Consensus        15 ~a~~~~~~~~~~~~---~g~~~~~~e~~la~~~g~~~~v~~~sgt~aL~~~l~al~----~~pG-----d~Viv~~~t~~   82 (376)
T TIGR02379        15 EYIAEAISEGKLSG---DGPFSRRCETWLENRTGTKKALLTPSCTAALEMAALLLD----IQPG-----DEVIMPSYTFV   82 (376)
T ss_pred             HHHHHHHHcCCccC---CcHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCCcH
Confidence            45555555544422   356789999999999999999999999999998887662    5677     99999999987


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +........+..+.+.        ++..-.+ .|+++++++++   +++++++.+   +++|...+    +++|.++|++
T Consensus        83 ~~~~~~~~~G~~~v~v--------d~d~~~~~~d~~~le~~i~---~~tk~Iip~---~~~G~~~d----~~~I~~la~~  144 (376)
T TIGR02379        83 STANAFVLRGAKIVFV--------DIRPDTMNIDETLIESAIT---HRTKAIVPV---HYAGVACD----MDTIMALANK  144 (376)
T ss_pred             HHHHHHHHcCCEEEEE--------ecCCCcCCCCHHHHHHhcC---cCceEEEEe---CCCCCccC----HHHHHHHHHH
Confidence            6654444333222211        1111111 27888998887   478887643   34677776    9999999999


Q ss_pred             cCCEEEEeccccCCc-ccccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCCCC-----------
Q 017259          161 YNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPGE-----------  223 (374)
Q Consensus       161 ~~i~li~Dea~~~~~-~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~~~-----------  223 (374)
                      ||++||+|++|+... +.|..     .+...|+.+||    |.+..|. ++|+++.+ +++.++++...           
T Consensus       145 ~~i~vIeDaa~~~g~~~~~~~-----~g~~~~~~~fSf~~~K~l~~g~-~gG~v~~~~~~~~~~~~~~~~~g~~~~~~~~  218 (376)
T TIGR02379       145 HQLFVIEDAAQGVMSTYKGRA-----LGSIGHLGTFSFHETKNYTSGG-EGGALLINDQAFIERAEIIREKGTNRSQFFR  218 (376)
T ss_pred             CCCEEEEECccccCCccCCcc-----cCCCCCEEEEeCCCCCcCcccC-CceEEEECCHHHHHHHHHHHHhCCCCccccc
Confidence            999999999998321 22221     22333677777    8888776 78887665 67766654211           


Q ss_pred             ----------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCceeeEEEEeeeEEEE
Q 017259          224 ----------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKEVRGRGLFNAVE  289 (374)
Q Consensus       224 ----------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~g~~~~~~  289 (374)
                                .+.++-++.+.++.+++.|+.+.  ++.++.++..+++.+.|+.+..    .+|...........++++.
T Consensus       219 ~~~~~~~~~~~g~n~~~~~~~Aa~g~~qL~~l~--~~~~~r~~~~~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~i~  296 (376)
T TIGR02379       219 GEVDKYTWRDIGSSYLPSELQAAYLWAQLEQAD--RINQDRLATWQLYQDALKPLEEKGIIELPSIPNGCQHNAHMFYIK  296 (376)
T ss_pred             cCCCcceeeeecccCCccHHHHHHHHHHHHHhH--HHHHHHHHHHHHHHHHhccCCcCCeeeCCCCCCCCeeeeEEEEEE
Confidence                      23345557777777777777653  4567777777777787765421    1221111222222344555


Q ss_pred             eccCCCchhHHHHHHHHHHCCeEeccC----C----------------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          290 FDKTALPVSAYDICLKMKERGILAKPT----H----------------------DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++...   +.+++.+.|.++||.++..    +                      ...+.+-++...+++|+++++++|++
T Consensus       297 ~~~~~---~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~~~~~~~~~l~LP~~~~l~~~~~~~i~~~i~~  373 (376)
T TIGR02379       297 LKDED---DRNELIKYLKEQEIMAVFHYVPLHSSPAGRYFGRFHGEDIYTTKESERLVRLPLYYGLSKEDQARVIQTICD  373 (376)
T ss_pred             ECCcC---CHHHHHHHHHHCCCCccccCcCCCcchhHHhhCCCCCCChHHHHHHhceEEccCCCCCCHHHHHHHHHHHHH
Confidence            55432   5889999999999987621    1                      23466666667899999999999987


Q ss_pred             HH
Q 017259          344 VL  345 (374)
Q Consensus       344 ~~  345 (374)
                      ++
T Consensus       374 ~~  375 (376)
T TIGR02379       374 YL  375 (376)
T ss_pred             Hh
Confidence            65

This family consists of TDP-4-keto-6-deoxy-D-glucose transaminases, the WecE (formerly RffA) protein of enterobacterial common antigen (ECA) biosynthesis, from enterobacteria. It also includes closely matching sequence from species not expected to make ECA, but which contain other genes for the biosynthesis of TDP-4-keto-6-deoxy-D-Glc, an intermediate in the biosynthesis of other compounds as well and the substrate of WecA. This family belongs to the DegT/DnrJ/EryC1/StrS aminotransferase family (pfam01041).

>TIGR01977 am_tr_V_EF2568 cysteine desulfurase family protein

Probab=99.90  E-value=1.3e-21  Score=183.87  Aligned_cols=290  Identities=15%  Similarity=0.153  Sum_probs=189.2

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +...++++.++++++.+   ++++++|++++++.++..+     ..+|     ++|++..++|.+.......+....+..
T Consensus        44 ~~~~~~~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~~~g~~  113 (376)
T TIGR01977        44 REVEETRQLLAKLFNAPSSAHVVFTNNATTALNIALKGL-----LKEG-----DHVITTPMEHNSVARPLECLKEQIGVE  113 (376)
T ss_pred             HHHHHHHHHHHHHhCcCCCCeEEEeCCHHHHHHHHHHhc-----cCCC-----CEEEECcchhhHHHHHHHHHHHHcCcE
Confidence            55678999999988653   7899999999999888765     5567     999998888655432211111000000


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ....+...+    -..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+ ++..
T Consensus       114 ~~~v~~~~~----~~~d~~~l~~~~~---~~~~~v~~~~~~n~tG~~~~----~~~i~~l~~~~~~~livD~a~~-~g~~  181 (376)
T TIGR01977       114 ITIVKCDNE----GLISPERIKRAIK---TNTKLIVVSHASNVTGTILP----IEEIGELAQENGIFFILDAAQT-AGVI  181 (376)
T ss_pred             EEEEecCCC----CCcCHHHHHHhcC---CCCeEEEEECCCCCccccCC----HHHHHHHHHHcCCEEEEEhhhc-cCcc
Confidence            000000000    1127899998886   57889999999999999998    9999999999999999999997 2211


Q ss_pred             ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHH-HhhcCCCCCC----------------CCCCCCHHHHHHH
Q 017259          178 GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEV-MLCIQPGEHG----------------STFGGNPLASAVA  238 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~-~~~~~~~~~~----------------~~~~~~~~~~~aa  238 (374)
                        .+  +.....+|++++|  |+++++. +.|+++.+++. ...+......                ...+.+.....+.
T Consensus       182 --~~--~~~~~~~D~~~~s~~K~l~~p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~t~~~~~~~a~  256 (376)
T TIGR01977       182 --PI--DMTELAIDMLAFTGHKGLLGPQ-GTGGLYIREGIKLKPLKSGGTGSHSALIDQPSELPDRFESGTLNTPGIAGL  256 (376)
T ss_pred             --CC--CchhcCCCEEEecccccccCCC-CceEEEEcCCcCcCceecCCCccccccccccccchhhccCCCCCHHHHHHH
Confidence              11  1122456776554  9988654 55666655442 2222211000                0113456667777


Q ss_pred             HHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEEEEeeeEEEEeccCCCchhHHHHHHHHHHC-CeE
Q 017259          239 IASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GIL  312 (374)
Q Consensus       239 ~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~  312 (374)
                      .++++++.+.   .+.++.+++.+++++.+++....  .+..  +....+.++++.++..    +..++.+.|.++ ||.
T Consensus       257 ~~al~~~~~~g~~~~~~~~~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~~v~~~~~~~----~~~~~~~~L~~~~gi~  330 (376)
T TIGR01977       257 NAGIKFIEKIGIANIAKKECMLTEKLLNGLREINKV--KIYGPADPANRVGVVSFTVEGI----DSEEVADILDEKFDIA  330 (376)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHhcCCCe--EEeCCCCccccCCeEEEEECCC----CHHHHHHHHhccCCEE
Confidence            7788887654   45566667777777766543211  0111  1112356677777543    678899999988 998


Q ss_pred             eccC--------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          313 AKPT--------------HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       313 v~~~--------------~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++.+              ..+.+|++++..+|++|++.++++|++
T Consensus       331 v~~g~~~~~~~~~~~g~~~~~~iRis~~~~~t~~dv~~~~~~l~~  375 (376)
T TIGR01977       331 TRTGLHCAPLAHKTIGTFATGTIRLSLGYFNTEEEIEKLLEALSE  375 (376)
T ss_pred             EEcccccchHHHHHhCCCCCCeEEEecCCCCCHHHHHHHHHHHhh
Confidence            8653              247899999999999999999999875

This model describes a subfamily of probable pyridoxal phosphate-dependent enzymes in the aminotransferase class V family. Related families contain members active as cysteine desulfurases, selenocysteine lyases, or both. The members of this family form a distinct clade and all are shorter at the N-terminus. The function of this subfamily is unknown.

>PLN02368 alanine transaminase

Probab=99.90  E-value=1.2e-22  Score=190.84  Aligned_cols=246  Identities=10%  Similarity=0.046  Sum_probs=163.5

Q ss_pred             CCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .++++.+++++.+..    ..++|++|+|+++++..++.++.    ..+|     |+|+++.|+|..+...+...+....
T Consensus       110 ~~LR~aia~~~~~~~g~~~~~~~I~it~Ga~~al~~~~~~l~----~~pG-----d~Vli~~P~Y~~y~~~~~~~g~~~v  180 (407)
T PLN02368        110 PGVRKEVAEFIERRDGYPSDPELIFLTDGASKGVMQILNAVI----RGEK-----DGVLVPVPQYPLYSATISLLGGTLV  180 (407)
T ss_pred             HHHHHHHHHHHHHhcCCCCChhhEEEcccHHHHHHHHHHHHc----CCCC-----CEEEEeCCCCccHHHHHHHcCCEEE
Confidence            345566666665543    35689999999999999998873    2567     9999999999887766555443322


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...    ...+..+  ..|++++++.++..   ..+++++++++++||||.+. +++.+++|.++|++||++||+||+|.
T Consensus       181 ~v~----~~~~~~~--~~d~~~le~~i~~~~~~~~~~k~l~l~nP~NPTG~v~-s~e~l~~l~~~a~~~~~~II~DE~Y~  253 (407)
T PLN02368        181 PYY----LEESENW--GLDVNNLRQSVAQARSKGITVRAMVIINPGNPTGQCL-SEANLREILKFCYQERLVLLGDEVYQ  253 (407)
T ss_pred             EEe----cccccCC--CCCHHHHHHHHHHHhhcCCCeEEEEEECCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            111    1000000  02789999988742   12688888888899999877 89999999999999999999999999


Q ss_pred             CCccccc-Cc-cc-ccC-CC------CCcE---EEecccc-c-CCccchhhhe---eCHHHHhhcCCCCCCCCCCCCHHH
Q 017259          173 GLARSGR-ML-AS-DWE-EV------RPDM---VILGKAL-G-GGVIPVSAVL---ADKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       173 ~~~~~g~-~~-~~-~~~-~~------~~d~---~s~sK~~-~-~G~~~~G~~~---~~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      ++.+.+. .+ +. ... +.      ...+   .||||.+ + .|+ |+||++   +++++++.+... ....++.+.++
T Consensus       254 ~l~y~~~~~~~s~~~~~~~~~~~~~~~~~vI~~~SfSK~~~~~~Gl-RiGy~i~~~~~~~li~~~~~~-~~~~~~~~~~~  331 (407)
T PLN02368        254 QNIYQDERPFISAKKVLMDMGPPISKEVQLVSFHTVSKGYWGECGQ-RGGYFEMTNIPPKTVEEIYKV-ASIALSPNVSG  331 (407)
T ss_pred             ccccCCCCCcccHHHHHhhhcccccccceEEEEecCCcccccCCcc-ceEEEEEeCCCHHHHHHHHHH-hcccCCCCcHH
Confidence            8755442 21 11 110 11      1233   3889998 4 799 999988   478888887764 23466788899


Q ss_pred             HHHHHHHHHHHh----------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEE
Q 017259          235 SAVAIASLDVIR----------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV  288 (374)
Q Consensus       235 ~~aa~~al~~~~----------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~  288 (374)
                      +.++.++++.-.          .  .++.+.++++++.+.+.|+++    |+ +....+.|.|+.|
T Consensus       332 Q~aa~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~rr~~~~~~L~~~----~g-~~~~~P~Gafy~~  392 (407)
T PLN02368        332 QIFMGLMVNPPKPGDISYDQFVRESKGILESLRRRARMMTDGFNSC----KN-VVCNFTEGAMYSF  392 (407)
T ss_pred             HHHHHHHhCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CC-eEeCCCCeeeEec
Confidence            999988885210          0  123455555666665655543    22 2223345555543

>PRK02948 cysteine desulfurase; Provisional

Probab=99.89  E-value=1.5e-21  Score=183.75  Aligned_cols=296  Identities=16%  Similarity=0.117  Sum_probs=192.0

Q ss_pred             CcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ...+++++.+++++|  .+++++++|+++++..++..+.... .++|     ++|++....|++.......+... +...
T Consensus        43 ~~~~~~r~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~~~~~-~~~g-----~~vv~~~~~h~s~~~~~~~~~~~-g~~v  115 (381)
T PRK02948         43 SLLQVCRKTFAEMIGGEEQGIYFTSGGTESNYLAIQSLLNAL-PQNK-----KHIITTPMEHASIHSYFQSLESQ-GYTV  115 (381)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCcHHHHHHHHHHHHHHhc-cCCC-----CEEEECCcccHHHHHHHHHHHhC-CCEE
Confidence            456778889999885  4589999999999999988875321 2345     88888776654433322221111 1110


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                      ...+...+.    ..|++++++.++   ++++++++++++|++|.+.+    +++|.++|+++|+++++|++++ ++.. 
T Consensus       116 ~~v~~~~~~----~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~vivD~~~~-~g~~-  182 (381)
T PRK02948        116 TEIPVDKSG----LIRLVDLERAIT---PDTVLASIQHANSEIGTIQP----IAEIGALLKKYNVLFHSDCVQT-FGKL-  182 (381)
T ss_pred             EEEeeCCCC----CCCHHHHHHhcC---CCCEEEEEECCcCCcEeehh----HHHHHHHHHHcCCEEEEEChhh-cccc-
Confidence            000110000    127899988886   46889999999999999998    9999999999999999998876 4321 


Q ss_pred             cCcccccCCCCCcEE--EecccccCCccchhhheeCHHH-HhhcCCC----CCCCCCCCCHHHHHHHHHHHHHHhh--hc
Q 017259          179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPG----EHGSTFGGNPLASAVAIASLDVIRD--EK  249 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~-~~~~~~~----~~~~~~~~~~~~~~aa~~al~~~~~--~~  249 (374)
                       ++...  ....|++  +++|.++ .. ++|+++.++++ ...+...    .....++.+.+++.++.++++.+.+  ++
T Consensus       183 -~~~~~--~~~~d~~~~s~~K~~g-p~-G~G~l~~~~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~al~~~~~~~~~  257 (381)
T PRK02948        183 -PIDVF--EMGIDSLSVSAHKIYG-PK-GVGAVYINPQVRWKPVFPGTTHEKGFRPGTVNVPGIAAFLTAAENILKNMQE  257 (381)
T ss_pred             -ccCcc--cCCCCEEEecHHhcCC-CC-cEEEEEEcCCCCCCCcccCCCCCCCcCCCCccHHHHHHHHHHHHHHHHHHHH
Confidence             11222  2345655  6679765 22 45777777654 1111110    0112456788888888888886533  24


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceee--E-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---------
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKE--V-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---------  317 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---------  317 (374)
                      ..++++++++++++.|+++...   +...  . ...+.++.+.++.-    +..++...|.++||.++.+.         
T Consensus       258 ~~~~~~~~~~~l~~~L~~~~~~---v~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~l~~~gI~v~~g~~c~~~~~~p  330 (381)
T PRK02948        258 ESLRFKELRSYFLEQIQTLPLP---IEVEGHSTSCLPHIIGVTIKGI----EGQYTMLECNRRGIAISTGSACQVGKQEP  330 (381)
T ss_pred             HHHHHHHHHHHHHHHHhcCCCC---EEEeCCCccCcCCEEEEEeCCC----CHHHHHHhcccCCEEEEchHhcCCCCCCC
Confidence            5677777777777777665311   1111  0 01123444444432    46778888889999998532         


Q ss_pred             --------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 --------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 --------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                                    .+++|++++..+|++|++++++.|+++++ .+
T Consensus       331 ~~~~~~~~~~~~~~~~~lRis~~~~~t~~di~~l~~~l~~~~~-~~  375 (381)
T PRK02948        331 SKTMLAIGKTYEEAKQFVRFSFGQQTTKDQIDTTIHALETIGN-QF  375 (381)
T ss_pred             CHHHHHcCCChHHhCceEEEEcCCCCCHHHHHHHHHHHHHHHH-HH
Confidence                          36899999999999999999999999887 54

>PLN02242 methionine gamma-lyase

Probab=99.89  E-value=2.8e-22  Score=188.88  Aligned_cols=298  Identities=12%  Similarity=0.114  Sum_probs=192.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+|+++|++++|.+.+++++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        68 ~~Y~r~~~Pt~~~LE~~lA~l~g~~~~l~~~sG~~Ai~~al~al-----~~~G-----D~Vl~~~~~Y~~~~~~~~~~~~  137 (418)
T PLN02242         68 YIYSRHFNPTVLNLGRQMAALEGTEAAYCTASGMSAISSVLLQL-----CSSG-----GHVVASNTLYGGTHALLAHFLP  137 (418)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHH-----hCCC-----CEEEEcCCcHHHHHHHHHHhhh
Confidence            34555678999999999999999999999999999999999988     4567     9999999988554322211100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .        .....+.+++..|+++++++++.  ++++++++++++|++|.+.+    +++|.++|++||++||+|++|+
T Consensus       138 ~--------~~G~~~~~~d~~d~e~l~~~i~~--~~tklV~lesp~NPtG~v~d----l~~I~~la~~~gi~livDea~~  203 (418)
T PLN02242        138 R--------KCNITTTFVDITDLEAVKKAVVP--GKTKVLYFESISNPTLTVAD----IPELARIAHEKGVTVVVDNTFA  203 (418)
T ss_pred             h--------ccCceEEEcCCCCHHHHHHhcCc--CCCEEEEEecCCCCCCcccC----HHHHHHHHHHhCCEEEEECCCC
Confidence            0        01122334445589999988862  15899999999999999987    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEEEecccccC-Cccc-hhhheeCHHHHhhcCCCCCC--CCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMVILGKALGG-GVIP-VSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~-~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .+...  .   ..++.+.-+.|+||.+++ |+ + +|++++++++++.++.....  ..++.....+.|++.+...-...
T Consensus       204 ~~~~~--~---~~~g~divv~S~SK~l~g~g~-~~gG~iv~~~~li~~l~~~~~~~~~~~g~~~~~~~A~l~~~~l~tl~  277 (418)
T PLN02242        204 PMVLS--P---ARLGADVVVHSISKFISGGAD-IIAGAVCGPAELVNSMMDLHHGALMLLGPTMNPKVAFELSERLPHLS  277 (418)
T ss_pred             ccCCC--H---HHcCCcEEEEeCccccCCCCC-ceEEEEEcCHHHHHHHHHHhhhhhhccCCCCCHHHHHHHHcCCCcHH
Confidence            54211  1   112222223488999985 66 5 58888888888877644222  12233333444444333211112


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHh--CCCcee---------eE---EEEeeeEEEEeccCCCchhHHHHHHHHHHC----C
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQ--FPNYVK---------EV---RGRGLFNAVEFDKTALPVSAYDICLKMKER----G  310 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~---------~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----G  310 (374)
                      ...++.+++++++.+.|++....  +|+...         ..   .+.|.++.|++...   ..+..|++.|.--    .
T Consensus       278 ~r~~~~~~~a~~la~~L~~~~~~V~yP~l~~~p~~~~~~~~~~~~~g~g~~~sf~l~~~---~~~~~f~~~l~~~~~~~~  354 (418)
T PLN02242        278 LRMKEHCRRAMEYAKRMKELGLKVIYPGLEDHPQHALLKSMANKGYGFGGLLCLDMDTE---ERANRLMRYLQNSTQFGF  354 (418)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCEEECCCCCCCccHHHHHHhcccCCCceeEEEEEECCH---HHHHHHHHHhhcccccce
Confidence            34567778888888888775311  121111         01   25678888888532   2466777776522    1


Q ss_pred             eEec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          311 ILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       311 i~v~----------~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.++          |.                 ..+.+|++.++-.   +.+.+++-|+++++
T Consensus       355 ~~~slG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGlE~---~~~dli~dl~~al~  414 (418)
T PLN02242        355 MAVSLGYYETLMSCSGSSTSSELDPEEKAAAGISPGLVRMSVGYTG---TLEQRWSQFEKALS  414 (418)
T ss_pred             eeecCCCCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEecCCC---CHHHHHHHHHHHHH
Confidence            1121          10                 1468999944321   25667777777776

>cd00614 CGS_like CGS_like: Cystathionine gamma-synthase is a PLP dependent enzyme and catalyzes the committed step of methionine biosynthesis

Probab=99.89  E-value=1.9e-22  Score=188.40  Aligned_cols=292  Identities=17%  Similarity=0.165  Sum_probs=196.4

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+.++.++...+|+++++++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        32 ~~y~r~~~p~~~~le~~la~l~g~~~a~~~~sG~~Ai~~~l~~l-----~~~g-----d~Vl~~~~~y~~~~~~~~~~~~  101 (369)
T cd00614          32 YIYSRIGNPTVDALEKKLAALEGGEAALAFSSGMAAISTVLLAL-----LKAG-----DHVVASDDLYGGTYRLFERLLP  101 (369)
T ss_pred             ceeECCCChhHHHHHHHHHHHHCCCCEEEEcCHHHHHHHHHHHH-----cCCC-----CEEEECCCCcchHHHHHHHHHh
Confidence            34455778999999999999999899999999999999999988     4567     9999999998775432221111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   +++++++++++.|++|.+.+    +++|.++|++||+++|+|++|+
T Consensus       102 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~g~~~d----l~~i~~la~~~g~~livD~t~~  165 (369)
T cd00614         102 K---------LGIEVTFVDPDDPEALEAAIK---PETKLVYVESPTNPTLKVVD----IEAIAELAHEHGALLVVDNTFA  165 (369)
T ss_pred             h---------cCeEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         113355566678899998886   47899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-C-ccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G-~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .... .     .......|++  |++|.++| | . ++|++++++ ++.+.++..........+++.+.++...++.+. 
T Consensus       166 ~~~~-~-----~~~~~g~Divv~S~tK~l~g~~~~-~gG~v~~~~~~l~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~-  237 (369)
T cd00614         166 TPYL-Q-----RPLELGADIVVHSATKYIGGHSDV-IAGVVVGSGEALIQRLRFLRLALGTILSPFDAWLLLRGLKTLP-  237 (369)
T ss_pred             chhc-C-----ChhhhCCcEEEeccceeccCCCCc-eEEEEEeCcHHHHHHHHHHHHhhCCCCCHHHHHHHHcCCCCHH-
Confidence            3211 1     1122345655  78899985 4 5 788888876 777777643333344567777666666665332 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHh----CCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe-
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQ----FPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-  313 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-  313 (374)
                       ...++..++..++.+.|++....    +|+...         ...+.|.++.|.++.+.  ....+|.+.|.--.+.+ 
T Consensus       238 -~r~~~~~~na~~la~~L~~~~~v~~V~~p~l~~~~~~~~~~~~~~g~g~i~s~~l~~~~--~~~~~f~~~l~~~~~~~s  314 (369)
T cd00614         238 -LRMERHSENALKVAEFLEKHPKVERVYYPGLPSHPQHELAKKQMSGYGGVFSFELKGGL--EAAKKFLNALKLFSLAVS  314 (369)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCchHHHHHHhcCCCceEEEEEeCCCH--HHHHHHHHcCCcceEccc
Confidence             34566677777787777654211    121100         01245888888886321  13444554443221111 


Q ss_pred             ---------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          314 ---------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       314 ---------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                               .+.                 .++.+|+++++    |+.+.+++.|.+++
T Consensus       315 ~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~liR~svGl----E~~~dl~~dl~~al  368 (369)
T cd00614         315 LGGVESLVEHPASMTHSQLPPEERAAAGITPGLVRLSVGI----EDVEDLIADLEQAL  368 (369)
T ss_pred             CCCCceeeeCCcccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence                     110                 14689999664    56777777777765

This pathway is unique to microorganisms and plants, rendering the enzyme an attractive target for the development of antimicrobials and herbicides. This subgroup also includes cystathionine gamma-lyases (CGL), O-acetylhomoserine sulfhydrylases and O-acetylhomoserine thiol lyases. CGL's are very similar to CGS's. Members of this group are widely distributed among all three forms of life.

>TIGR03812 tyr_de_CO2_Arch tyrosine decarboxylase MnfA

Probab=99.89  E-value=9.9e-21  Score=177.74  Aligned_cols=286  Identities=15%  Similarity=0.129  Sum_probs=184.8

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHccc-ccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY-VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~-~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +..+++++.|++++|.+  ++++++|+++++..++.++..... ..+|     ++|++.+++|+++...+...+.     
T Consensus        59 ~~~~~~~~~la~~~g~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~g-----~~vl~~~~~h~~~~~~~~~~G~-----  128 (373)
T TIGR03812        59 KIEEEVVGSLGNLLHLPDAYGYIVSGGTEANIQAVRAAKNLAREEKRT-----PNIIVPESAHFSFEKAAEMLGL-----  128 (373)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeccHHHHHHHHHHHHHHHHhccCCC-----cEEEECCcchHHHHHHHHHcCC-----
Confidence            34577889999988864  678899999999988877643110 1234     8899999887553332222211     


Q ss_pred             ccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                              .+..+++     .|+++++++++++  ..+++++. +.+++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       129 --------~~~~v~~~~~~~~d~~~l~~~l~~~--~~~vv~~~-~~~~tG~~~~----~~~i~~l~~~~~~~livD~a~~  193 (373)
T TIGR03812       129 --------ELRYAPLDEDYTVDVKDVEDLIDDN--TIGIVGIA-GTTELGQIDD----IEELSKIALENGIYLHVDAAFG  193 (373)
T ss_pred             --------eEEEEeeCCCCCcCHHHHHHHHhhC--cEEEEEEC-CCCCCCccCC----HHHHHHHHHHcCCeEEEEcCch
Confidence                    1122221     2789999988742  23445554 4678898888    9999999999999999999998


Q ss_pred             CCccc----ccC-cccccCCCCCcEEEec--ccccCCccchhhhe-eCHHHHhhcCCCCCC--C------CCCCCHHHHH
Q 017259          173 GLARS----GRM-LASDWEEVRPDMVILG--KALGGGVIPVSAVL-ADKEVMLCIQPGEHG--S------TFGGNPLASA  236 (374)
Q Consensus       173 ~~~~~----g~~-~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~-~~~~~~~~~~~~~~~--~------~~~~~~~~~~  236 (374)
                      ++...    |.. ...+......|.+++|  |...++. |.|+++ .++++.+.+......  .      ..+.+....+
T Consensus       194 ~~~~~~~~~~~~~~~~d~~~~~~d~~~~s~~K~~~~~~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~gt~~~~~~~  272 (373)
T TIGR03812       194 GFVIPFLKKGYNPPPFDFSLPGVQSITIDPHKMGLSPI-PAGGILFRSKSYLKYLSVDAPYLTVKKQATITGTRSGASAA  272 (373)
T ss_pred             hHHHHHHhcCCCCCCccccCCCCCEEEECccccCCCcC-CceEEEEeCHHHHhhhcccCcccCCCCCcceEeechhHHHH
Confidence            54110    000 0111111134555554  7444566 777654 577777665421110  0      0133456677


Q ss_pred             HHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          237 VAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       237 aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      ++.++++.+..+   ++.++..++.+++++.|+++.     ......+..+++.+.++      ...++.++|.++||.+
T Consensus       273 ~~~~~l~~l~~~g~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~v~~~~~------~~~~v~~~L~~~gi~v  341 (373)
T TIGR03812       273 ATYAVIKYLGREGYRKIVAECMENTRYLVEELKKIG-----FEPVIEPVLNIVAFEVD------DPEEVRKKLRDRGWYV  341 (373)
T ss_pred             HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhCC-----CeEEcCCCceEEEEEeC------CHHHHHHHHHHCCcee
Confidence            788888876543   456777777888888777652     21111233455555544      2458999999999999


Q ss_pred             ccC-CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          314 KPT-HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       314 ~~~-~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +.. .++++|++++..++++|+++++++|++
T Consensus       342 ~~~~~~~~iRis~~~~~t~edid~l~~~L~~  372 (373)
T TIGR03812       342 SVTRCPKALRIVVMPHVTREHIEEFLEDLKE  372 (373)
T ss_pred             ccCCCCCEEEEEEECCCCHHHHHHHHHHHhh
Confidence            876 467999999888999999999999875

Members of this protein family are the archaeal form, MnfA, of tyrosine decarboxylase, and are involved in methanofuran biosynthesis. Members show clear homology to the Enterococcus form, Tdc, that is involved in tyrosine decarboxylation for resistance to acidic conditions.

>PRK11706 TDP-4-oxo-6-deoxy-D-glucose transaminase; Provisional

Probab=99.89  E-value=4.6e-21  Score=179.54  Aligned_cols=302  Identities=16%  Similarity=0.159  Sum_probs=195.1

Q ss_pred             HHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC
Q 017259            3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG   82 (374)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg   82 (374)
                      ++.+.+..+..+   +..+..++++++++++++.+++++++||++|+..++.++.    .++|     |+|+++.++|.+
T Consensus        16 ~~~~~l~~~~~~---g~~~~~~~~e~~la~~~g~~~~v~~~sgt~al~~~l~~~~----~~~G-----d~Viv~~~t~~~   83 (375)
T PRK11706         16 YIQQAMSSGKLC---GDGGFTRRCQQWLEQRFGSAKVLLTPSCTAALEMAALLLD----IQPG-----DEVIMPSYTFVS   83 (375)
T ss_pred             HHHHHHHcCCcc---CCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHhC----CCCC-----CEEEECCCCcHH
Confidence            445555444332   2256678899999999999999999999999998887663    5677     999999999977


Q ss_pred             cccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           83 RTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      ........+..+.+.        ++..-.+ .|+++++++++   ++++++++.+   ++|...+    +++|.++|++|
T Consensus        84 ~~~~~~~~G~~~v~~--------d~d~~~~~~d~~~le~~i~---~~tk~i~~~~---~~G~~~~----~~~i~~la~~~  145 (375)
T PRK11706         84 TANAFVLRGAKIVFV--------DIRPDTMNIDETLIEAAIT---PKTRAIVPVH---YAGVACE----MDTIMALAKKH  145 (375)
T ss_pred             HHHHHHHcCCEEEEE--------ecCCCcCCcCHHHHHHhcC---CCCeEEEEeC---CCCCccC----HHHHHHHHHHc
Confidence            655544433322211        1111111 27899999887   4678887653   4676666    99999999999


Q ss_pred             CCEEEEeccccCCc-ccccCcccccCCCCCcEEEec----ccccCCccchhhheeCHHHHhhcCCCC-------------
Q 017259          162 NILMIADEIQSGLA-RSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLADKEVMLCIQPGE-------------  223 (374)
Q Consensus       162 ~i~li~Dea~~~~~-~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~~~~~~~~~~~~-------------  223 (374)
                      |++||+|++|+.+. ..|...     +...|+.+||    |.++.|. +++++..++++.++++...             
T Consensus       146 ~i~vIeD~a~a~g~~~~~~~~-----g~~~~~~~~Sf~~~K~l~~g~-gG~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~  219 (375)
T PRK11706        146 NLFVVEDAAQGVMSTYKGRAL-----GTIGHIGCFSFHETKNYTAGE-GGALLINDPALIERAEIIREKGTNRSQFFRGQ  219 (375)
T ss_pred             CCEEEEECccccccccCCeee-----ecCcCEEEEeCCCCccccccC-CeEEEECCHHHHHHHHHHHHcCCCcchhhccC
Confidence            99999999998332 222211     2223666777    9998776 6566666777766443211             


Q ss_pred             --------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCceeeEEEEeeeEEEEec
Q 017259          224 --------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       224 --------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~~~~~g~~~~~~~~  291 (374)
                              .+.++-++.+..+.+++.++.+  +.+.++.+++.+++.+.|..+..    .+|...........++++.++
T Consensus       220 ~~~~~~~~~g~~~~~~~~~aa~~~~ql~~l--~~~~~~R~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  297 (375)
T PRK11706        220 VDKYTWVDIGSSYLPSELQAAYLWAQLEAA--DRINQRRLALWQRYYDALAPLAEAGRIELPSIPDDCKHNAHMFYIKLR  297 (375)
T ss_pred             CCcceeeecccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCcCCeeecCCCCCCCceeeEEEEEEEC
Confidence                    1233344556666666666654  34566666777777777765421    111111111233445666665


Q ss_pred             cCCCchhHHHHHHHHHHCCeEeccC----C----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          292 KTALPVSAYDICLKMKERGILAKPT----H----------------------DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~Gi~v~~~----~----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +..   +.+++.+.|.++||.++..    +                      ...+.+-++...+++|++.+++.|++++
T Consensus       298 ~~~---~r~~l~~~L~~~gI~~~~~~~p~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~  374 (375)
T PRK11706        298 DLE---DRSALINFLKEAGIMAVFHYIPLHSSPAGERFGRFHGEDRYTTKESERLLRLPLFYNLTDVEQRTVIDTILEFF  374 (375)
T ss_pred             CcC---CHHHHHHHHHHCCCCccccCCccCcchhhHhcCCCCCCChHHHHHHhCcEeccCCCCCCHHHHHHHHHHHHHHh
Confidence            433   6899999999999986421    0                      2344554455678999999999998765

>KOG1368 consensus Threonine aldolase [Amino acid transport and metabolism]

Probab=99.88  E-value=2.3e-21  Score=164.78  Aligned_cols=319  Identities=15%  Similarity=0.154  Sum_probs=212.5

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC-
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC-   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~-   79 (374)
                      +.|++++..-..... ++.++...+|+++.++++|.|..+|.+||+.++.++++.-.    -.+|     .+||+-+.+ 
T Consensus        36 deMr~am~eA~vgDdVyGeD~tt~rLE~~vA~l~GKEAgLFv~SGTmgNllaIm~Hc----~~rg-----~eii~gd~~H  106 (384)
T KOG1368|consen   36 DEMRRAMAEASVGDDVYGEDPTTNRLEQRVAELFGKEAGLFVPSGTMGNLLAIMVHC----HQRG-----SEIIVGDRAH  106 (384)
T ss_pred             HHHHHHHhhcccCcccccCCccHHHHHHHHHHHhCccceeeecccccccHHHHHHHh----cCCC-----ceEEeccchh
Confidence            467777766444333 34577788899999999999999999999999999999886    3456     667666554 


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh-----cCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE-----SGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-----~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      -|-+..+..+.-+.-.. ....+. .+...    |++++|+++..     |.+.++.+++|+.+++.|+.+.+-++++++
T Consensus       107 I~~~E~gg~s~l~gv~~-~tv~~e-~dgtm----~ledIe~~ir~~~GD~H~p~T~LIclENT~~~~Gg~vlPle~~~~v  180 (384)
T KOG1368|consen  107 IHRYEQGGISQLAGVHV-RTVKNE-NDGTM----DLEDIEAAIRVPKGDCHMPPTKLICLENTHNNCGGKVLPLEELDRV  180 (384)
T ss_pred             eeehhccChhhhcccee-EeeeeC-CCCee----eHHHHHHhhcCCCCCccCCCceEEEeeccccccCceEeeHHHHHHH
Confidence            23333333322111000 000000 11111    79999999983     446799999999999888777789999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcE--EEecccccCCccchhh-heeCHHHHhhcCCC--CCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM--VILGKALGGGVIPVSA-VLADKEVMLCIQPG--EHGSTFG  229 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~--~s~sK~~~~G~~~~G~-~~~~~~~~~~~~~~--~~~~~~~  229 (374)
                      .++|++||+.|..|.+.-.-...........+.-..|-  +++||++++   |+|- ++++++++++.+-.  ..+..+-
T Consensus       181 ~~lak~~glkLH~DGARi~NAavasgV~vk~i~~~fDSVsiCLSKglgA---PVGSViVG~k~FI~kA~~~RKalGGGmR  257 (384)
T KOG1368|consen  181 KALAKRHGLKLHMDGARIFNAAVASGVPVKKICSAFDSVSICLSKGLGA---PVGSVIVGSKDFIDKARHFRKALGGGMR  257 (384)
T ss_pred             HHHHhccCCeeecchhhhhhHHHHcCCCHHHHHHhhhhhhhhhhccCCC---CcccEEEccHHHHHHHHHHHHHhcCchh
Confidence            99999999999999876411000011111112122333  378899983   5665 66788887765422  2344455


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      .+.+.++|++.+++.  .....+.-+++.+.+.+.+....    .+...+. .+.++..+.+...  +.+++++++.+.+
T Consensus       258 QsGvLaaaaLval~~--~~~~L~~dHk~A~~lAe~~~~~~----~i~v~v~a~etNiv~~~l~q~--~~~~~~l~~~~~k  329 (384)
T KOG1368|consen  258 QSGVLAAAALVALDE--NVPLLRADHKRAKELAEYINTPE----EIRVEVPAVETNIVNMVLCQA--RLTAEELCKFLEK  329 (384)
T ss_pred             HHHHHHHHHHHHhhc--chHHHHHHHHHHHHHHHHhcccc----ceeeecchhhcceeeeecccc--cCCHHHHHHHHHH
Confidence            566777788877763  22345555666666666655331    1323333 4566777666332  2379999999999


Q ss_pred             CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHH-HHHh
Q 017259          309 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALH-DVLE  346 (374)
Q Consensus       309 ~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~-~~~~  346 (374)
                      .||.+-......+||.++...|+++++.+.+.+. .++.
T Consensus       330 ~gi~lm~~~s~r~Rivlh~Qvt~~~ve~~~~~~~k~~~~  368 (384)
T KOG1368|consen  330 NGILLMGGASRRIRIVLHHQVTDEDVEYVKSVLSKKFLK  368 (384)
T ss_pred             CCeEEeeccccceEEEEEEecCHHHHHHHHHHHHHHHHh
Confidence            9999988877779999999999999999999994 4444

>cd00617 Tnase_like Tryptophanase family (Tnase)

Probab=99.88  E-value=6.1e-21  Score=179.23  Aligned_cols=315  Identities=16%  Similarity=0.129  Sum_probs=192.5

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      +..++...+|++.+++++|.+++++++||++|+..+++++     .++|     |.| +.+++|..+.......++.+..
T Consensus        49 Y~~~~g~~~Leeaia~~~g~~~vv~t~~Gt~Al~la~~al-----~~pG-----D~V-~~~~~f~~~~~~i~~~Ga~pv~  117 (431)
T cd00617          49 YAGSKSFYDLEDAVQDLFGFKHIIPTHQGRGAENILFSIL-----LKPG-----RTV-PSNMHFDTTRGHIEANGAVPVD  117 (431)
T ss_pred             cCCCCCHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHHh-----CCCC-----CEE-ccCCcccchHHHHHhCCCEeEE
Confidence            3447778999999999999999999999999999999887     6778     876 5677775544333333333332


Q ss_pred             cccCCCCCCCceeccC---CCHHHHHHHHHhc-CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           97 IRGFGPLLPGHLKVDF---GDITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...-..... -...|+   -|+++|+++|+++ ..++++++++.++|++|+.+.+.+.+++|.++|++||++||.|+++.
T Consensus       118 v~i~~~~~~-~~~~pf~gniD~e~Le~~I~~~~~~~~~~I~v~~p~N~~gG~~~s~~~l~~i~eia~~~gi~li~DaAr~  196 (431)
T cd00617         118 LVIDEAHDA-QELIPFKGNIDVAKLEKLIDEVGAENIPYIVLTITNNTAGGQPVSMANLREVRELAHKYGIPVVLDAARF  196 (431)
T ss_pred             Eeccccccc-ccccCCCCCcCHHHHHHHhCcccCCCccEEEEECCcCCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhh
Confidence            211000000 000112   2899999999854 24588899988888874455589999999999999999999999975


Q ss_pred             C----C------cccccCccccc---CCCCCcEEEec--ccccCCccc-hhhheeCH-HHHhhcCCCC----CCCCCCC-
Q 017259          173 G----L------ARSGRMLASDW---EEVRPDMVILG--KALGGGVIP-VSAVLADK-EVMLCIQPGE----HGSTFGG-  230 (374)
Q Consensus       173 ~----~------~~~g~~~~~~~---~~~~~d~~s~s--K~~~~G~~~-~G~~~~~~-~~~~~~~~~~----~~~~~~~-  230 (374)
                      .    |      ++.+.... +.   ..-..|..++|  |..+  . + +|++++++ +++++++...    ...++++ 
T Consensus       197 ~~na~~i~~r~~g~~~~si~-ei~~e~~s~sd~~~mS~~K~~~--~-~~GG~i~~~d~~l~~~~~~~~~~~~~~~~~gG~  272 (431)
T cd00617         197 AENAYFIKEREEGYRDKSIA-EIAREMFSYADGCTMSAKKDGL--V-NIGGFLALRDDELYEEARQRVVLYEGFVTYGGM  272 (431)
T ss_pred             HhhhhhhhcccccccCCCHH-HHHHHhhccCCEEEEEeecCCC--C-ccceEEEeCcHHHHHHHHHhccccCCccccccc
Confidence            1    1      11111110 00   00122333333  3322  1 3 34678876 5888876421    1123333 


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLK  305 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~  305 (374)
                      +.-.+++...+|+...+.++.++..++++++.+.|++.+     +....+..+++++++++....     ..++.+++..
T Consensus       273 ~~r~~~A~A~gL~e~~~~~~l~~~~~~r~~l~~~L~~~G-----~~v~~P~Ggh~v~~d~~~~~~~~~~~~~~~~~la~~  347 (431)
T cd00617         273 AGRDMEALAQGLREAVEEDYLRHRVEQVRYLGDRLDEAG-----VPIVEPAGGHAVFIDAREFLPHIPQEQFPAQALAAE  347 (431)
T ss_pred             cHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHCC-----CCccCCCcceEEEEEhHHhcCCCCcccCcHHHHHHH
Confidence            222233333255442223344444445577777777663     222234456777877653110     1147788877


Q ss_pred             HH-HCCeEecc-----------C------CCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          306 MK-ERGILAKP-----------T------HDTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       306 l~-~~Gi~v~~-----------~------~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      |. +.||.+..           .      ....+|++++. ..|.++++.+.++|..+++ ....+.
T Consensus       348 L~~e~gV~~~~~g~~~~~~~~~~~~~~~~~~~~~rl~~prr~~t~~~~~~~~~~~~~~~~-~~~~~~  413 (431)
T cd00617         348 LYLEAGVRAVELGIFSAGRDPNTGENKYPELELVRLAIPRRVYTQDHMDYVAAAVIALYE-RREDIR  413 (431)
T ss_pred             HHHHcCeeEEeecceecccCCCCCcccCCccceeEEeccccccCHHHHHHHHHHHHHHHh-hHhhCC
Confidence            66 45787532           0      13789998775 6799999999999999997 554444

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to tryptophanase (Tnase) and tyrosine phenol-lyase (TPL). Tnase and TPL are active as tetramers and catalyze beta-elimination reactions. Tnase catalyzes degradation of L-tryptophan to yield indole, pyruvate and ammonia and TPL catalyzes degradation of L-tyrosine to yield phenol, pyruvate and ammonia.

>TIGR01814 kynureninase kynureninase

Probab=99.88  E-value=2.9e-20  Score=176.18  Aligned_cols=286  Identities=17%  Similarity=0.185  Sum_probs=183.6

Q ss_pred             cccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCcee
Q 017259           32 SMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK  109 (374)
Q Consensus        32 ~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~  109 (374)
                      +++|  .++++|++|+|++++.++..+.     ++|  .++++|++.+..|..............+    .... .....
T Consensus        80 ~l~g~~~~~v~~~~~~t~~l~~~~~~~~-----~~~--~~~~~i~~~~~~~~s~~~~~~~~~~~~g----~~~~-~~~~~  147 (406)
T TIGR01814        80 RLVGAKEDEVVVMNTLTINLHLLLASFY-----KPT--PKRYKILLEAKAFPSDHYAIESQLQLHG----LTVE-ESMVQ  147 (406)
T ss_pred             cccCCCCCcEEEeCCchHHHHHHHHHhc-----CCc--CCccEEEecCCCCChHHHHHHHHHHhcC----CCcc-cceEE
Confidence            5665  4589999999999999888762     222  0124677777776553332221100000    0000 00011


Q ss_pred             ccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccc
Q 017259          110 VDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD  184 (374)
Q Consensus       110 ~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~  184 (374)
                      ++.     .|++++++.+++..+++++++++++++.+|.+.|    +++|.++|+++|+++++|++|+ +|..  ++...
T Consensus       148 ~~~~~~g~~~~~~l~~~~~~~~~~t~lv~~~~v~~~tG~~~~----~~~i~~~~~~~g~~~~vD~aq~-~G~~--~id~~  220 (406)
T TIGR01814       148 IEPREEETLRLEDILDTIEKNGDDIAVILLSGVQYYTGQLFD----MAAITRAAHAKGALVGFDLAHA-VGNV--PLDLH  220 (406)
T ss_pred             eccCCCCccCHHHHHHHHHhcCCCeEEEEEeccccccceecC----HHHHHHHHHHcCCEEEEEcccc-cCCc--ccccc
Confidence            111     1678888888755578999999999999999999    9999999999999999999998 2211  22222


Q ss_pred             cCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCC-------------C----------CCCCCHHHHHHHH
Q 017259          185 WEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG-------------S----------TFGGNPLASAVAI  239 (374)
Q Consensus       185 ~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~-------------~----------~~~~~~~~~~aa~  239 (374)
                        ...+|++++|  |++.||. + |+++..++....+.+...+             .          ..+++..+.+++.
T Consensus       221 --~~gvD~~~~s~hK~l~g~p-G-~~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~GT~~~~~~~~l~  296 (406)
T TIGR01814       221 --DWGVDFACWCTYKYLNAGP-G-AGAFVHEKHAHTERPRLAGWWGHARPTRFKMDNTLGLIPCGFRISNPPILSVAALR  296 (406)
T ss_pred             --cCCCCEEEEcCccccCCCC-C-eEEEEehhhhhhcCCCCCcccCCCCccccccccccCCCccceeeCCccHHHHHHHH
Confidence              3445666554  9998776 5 5554443333333321110             0          1234667777788


Q ss_pred             HHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCc--ee--eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          240 ASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNY--VK--EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       240 ~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      ++++.+.+.   ...++.+.+.+++++.|+++....+++  ..  ....++.++.|.++ .    ...++.+.|.++||.
T Consensus       297 ~al~~~~~~g~~~i~~~~~~l~~~l~~~l~~~~~~~~~~~i~~~~~~~~r~~~v~~~~~-~----~~~~~~~~L~~~gi~  371 (406)
T TIGR01814       297 GSLDIFDQAGMEALRKKSLLLTDYLEELIKARCGGPPVLTIITPRDHAQRGCQLSLTHP-V----PGKAVFQALIKRGVI  371 (406)
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhcCCCCceEEeCCCChhhcCCeEEEEec-C----CHHHHHHHHHHCCEE
Confidence            888887553   556777777777777776642101111  11  11123456666666 2    467899999999999


Q ss_pred             eccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHH
Q 017259          313 AKPTHDTIVRLTP-PLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       313 v~~~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +....++.+|+++ ++.+|++|+++++++|++++
T Consensus       372 v~~~~~~~iRiS~~~~~nt~~did~l~~~l~~~~  405 (406)
T TIGR01814       372 GDKREPSVIRVAPVPLYNTFVDVYDAVNVLEEIL  405 (406)
T ss_pred             EeccCCCeEEEechhccCCHHHHHHHHHHHHHHh
Confidence            8876668999999 68999999999999998875

This model describes kynureninase, a pyridoxal-phosphate enzyme. Kynurinine is a Trp breakdown product and a precursor for NAD. In Chlamydia psittaci, an obligate intracellular pathogen, kynureninase makes anthranilate, a Trp precursor, from kynurenine. This counters the tryptophan hydrolysis that occurs in the host cell in response to the pathogen.

>TIGR01437 selA_rel uncharacterized pyridoxal phosphate-dependent enzyme

Probab=99.88  E-value=1.5e-20  Score=174.89  Aligned_cols=291  Identities=13%  Similarity=0.176  Sum_probs=179.7

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccC----------CCCccEEEEeccCCCCcc---c
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKF----------SIDEAIIVSCCGCFHGRT---L   85 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~----------~~~~~~vi~~~~~yhg~~---~   85 (374)
                      ..+..+++++++++++|.+++++++|+++|+..+++.+.     ++|.          ....++|+++.|.|..+.   .
T Consensus        43 ~~~~~~~~~~~~a~~~g~~~~~~~~g~t~al~~al~al~-----~~Gd~~~~~~~~~s~~~~~eVi~~~~~~~~~~~~~~  117 (363)
T TIGR01437        43 IKELVNKTGEYIANLLGVEDAVIVSSASAGIAQSVAAVI-----TRGNRYLVENLHDSKIEVNEVVLPKGHNVDYGAPVE  117 (363)
T ss_pred             HHHHHHHHHHHHHHhhCCCeEEEEcCHHHHHHHHHHHHh-----cCCCcchhhcccccccccceEEEECccchhcCCchH
Confidence            356788899999999999999999999999999999884     4440          001148888887764332   1


Q ss_pred             ccccccC-CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEE-EccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259           86 AAISMSC-DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYNI  163 (374)
Q Consensus        86 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi-~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i  163 (374)
                      ....+.+ .+.+.        +..  ...|+++++++++   ++|++++ ++++++++|.+.+    +++|.++|++||+
T Consensus       118 ~~~~~~g~~~v~v--------~~~--~~~d~~~le~ai~---~~t~ai~~v~~~~~~~g~~~~----~~~i~~~a~~~gi  180 (363)
T TIGR01437       118 TMVRLGGGKVVEA--------GYA--NECSAEQLEAAIT---EKTAAILYIKSHHCVQKSMLS----VEDAAQVAQEHNL  180 (363)
T ss_pred             HHHHhcCCeEEEE--------cCC--CCCCHHHHHHhcC---hhceEEEEEecCCCCcCCcCC----HHHHHHHHHHcCC
Confidence            1111111 11111        110  1138999999997   5677665 4555677888887    9999999999999


Q ss_pred             EEEEeccccCCcccccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHhhcCCCCCC--CCCCCCHHHHHHHH
Q 017259          164 LMIADEIQSGLARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVMLCIQPGEHG--STFGGNPLASAVAI  239 (374)
Q Consensus       164 ~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~aa~  239 (374)
                      ++|+|++|+.-   ..  ...  ....|++++  +|.++ |+ ++|+++.++++++.+.....+  ..+......+++..
T Consensus       181 ~vivD~a~~~~---~~--~~~--~~g~D~~~~S~~K~l~-gp-~~G~l~~~~~~i~~~~~~~~~~~~~~~~~~~~~~gl~  251 (363)
T TIGR01437       181 PLIVDAAAEED---LQ--KYY--RLGADLVIYSGAKAIE-GP-TSGLVLGKKKYIEWVKLQSKGIGRAMKVGKENILGLT  251 (363)
T ss_pred             eEEEECCCCCc---hH--HHH--HcCCCEEEEeCCcccC-CC-ceEEEEEcHHHHHHHHhccCCCcceeccCHHHHHHHH
Confidence            99999999711   10  001  123466644  59875 55 678888888777766432211  11122223344555


Q ss_pred             HHHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE--EEee---eEEEEeccCCCchhHHHHHHHHHHCC--
Q 017259          240 ASLDVIRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGL---FNAVEFDKTALPVSAYDICLKMKERG--  310 (374)
Q Consensus       240 ~al~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~---~~~~~~~~~~~~~~~~~~~~~l~~~G--  310 (374)
                      ++++.+.+.  +..+...++.++++++|+++    |++....+  ..+.   ...+.++....+.+..++.+.|.++|  
T Consensus       252 aAl~~~~~~~~~~~~~~~~~~~~l~~~L~~i----~g~~~~~~~~~~~~~~~~~~v~~~~~~~g~~~~~l~~~L~~~~~~  327 (363)
T TIGR01437       252 AALEQYLSTGKESGAEMVAKLTPFIEALNTL----KGVSASIVQDEAGRDIARAEIRFDESELGMTAADVVQALRQGEPA  327 (363)
T ss_pred             HHHHHHHccCcccHHHHHHHHHHHHHHHhcC----CCeEEEEecCCCCCcCceEEEEEeccCCCCCHHHHHHHHhcCCCC
Confidence            555554332  33444445566676666654    22211111  1011   11122322111237899999999877  


Q ss_pred             eEecc--CCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          311 ILAKP--THDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       311 i~v~~--~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      |.+++  ...+.+|+.+.. .+++|++.++++|++++
T Consensus       328 I~~r~~~~~~~~~~l~~~~-~~~~e~~~~~~~l~~~~  363 (363)
T TIGR01437       328 IYTRGYKANEGIIEIDPRS-VTGGQLDIIVERIREIV  363 (363)
T ss_pred             EEEeeeeecCCeEEEEeec-CCHHHHHHHHHHHHHhC
Confidence            77775  347789998874 66999999999998763

This model describes a protein related to a number of pyridoxal phosphate-dependent enzymes, and in particular to selenocysteine synthase (SelA), which converts Ser to selenocysteine on its tRNA. While resembling SelA, this protein is found only in species that have a better candidate SelA or else lack the other genes (selB, selC, and selD) required for selenocysteine incorporation.

>cd00616 AHBA_syn 3-amino-5-hydroxybenzoic acid synthase family (AHBA_syn)

Probab=99.87  E-value=1.5e-20  Score=175.18  Aligned_cols=296  Identities=16%  Similarity=0.189  Sum_probs=193.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.+....+    +..+...++++.+++++|.+++++++||++|++.+++.+.    ..+|     ++|+++.++|+
T Consensus         3 ~~~~~~~~~~~~----~~~~~~~~~~~~la~~~~~~~~~~~~sgt~al~~~l~~l~----~~~g-----d~vl~~~~~~~   69 (352)
T cd00616           3 EAVEEVLDSGWL----TLGPKVREFEKAFAEYLGVKYAVAVSSGTAALHLALRALG----IGPG-----DEVIVPSFTFV   69 (352)
T ss_pred             HHHHHHHHcCCc----cCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC----CCCC-----CEEEeCCcchH
Confidence            566776666554    3367899999999999999999999999999999998773    3566     99999999988


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +........+....+.    +    +....+ .|+++++++++   ++++++++++   ++|...+    +++|.++|++
T Consensus        70 ~~~~~~~~~g~~~~~~----~----~~~~~~~~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~  131 (352)
T cd00616          70 ATANAILLLGATPVFV----D----IDPDTYNIDPELIEAAIT---PRTKAIIPVH---LYGNPAD----MDAIMAIAKR  131 (352)
T ss_pred             HHHHHHHHcCCeEEEE----e----cCCCcCCcCHHHHHHhcC---cCCeEEEEEC---CCCCcCC----HHHHHHHHHH
Confidence            7654443332221111    1    110011 27889988885   5788888765   4577777    9999999999


Q ss_pred             cCCEEEEecccc-CCcccccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCCC---C--------
Q 017259          161 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG---E--------  223 (374)
Q Consensus       161 ~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~~---~--------  223 (374)
                      +|+++|+|++|+ |....+.     ..+...|+.++|    |.+++|  ++|+++.+ +++.+.++..   .        
T Consensus       132 ~~i~li~D~a~~~g~~~~~~-----~~~~~~d~~~~S~~~~K~~~~~--~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~  204 (352)
T cd00616         132 HGLPVIEDAAQALGATYKGR-----KVGTFGDAGAFSFHPTKNLTTG--EGGAVVTNDEELAERARLLRNHGRDRDRFKY  204 (352)
T ss_pred             cCCeEEEECCCCCCCeECCE-----EcccCcceeEEcCCCCCCCccc--CceEEEECCHHHHHHHHHHHHcCCCCCCCcc
Confidence            999999999998 2211111     112223555444    988544  45666665 4665544321   0        


Q ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE---EEEeeeEEEEecc--CC
Q 017259          224 ----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDK--TA  294 (374)
Q Consensus       224 ----~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~g~~~~~~~~~--~~  294 (374)
                          .+.++..+.+..+.+...++.+  +++.++.+++.+++++.|.++...  .+....   .....++.+.+++  ..
T Consensus       205 ~~~~~~~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~  280 (352)
T cd00616         205 EHEILGYNYRLSEIQAAIGLAQLEKL--DEIIARRREIAERYKELLADLPGI--RLPDVPPGVKHSYHLYVIRLDPEAGE  280 (352)
T ss_pred             ccceeeeccCcCHHHHHHHHHHHHhh--HHHHHHHHHHHHHHHHHhcCCCCc--cCCCCCCCCceeeEEEEEEECCcCCC
Confidence                1112344566655555555443  345677777888888877764211  111111   1244566666653  22


Q ss_pred             CchhHHHHHHHHHHCCeEeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          295 LPVSAYDICLKMKERGILAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~Gi~v~~~~---------------------------~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                         +..++.+.|.++||.++...                           .+.+|++++..+|++|++.++++|+
T Consensus       281 ---~~~~v~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~l~~~~~~t~~di~~i~~~l~  352 (352)
T cd00616         281 ---SRDELIEALKEAGIETRVHYPPLHHQPPYKKLLGYPPGDLPNAEDLAERVLSLPLHPSLTEEEIDRVIEALR  352 (352)
T ss_pred             ---CHHHHHHHHHHCCCCeeeecCccccCHhhhhccCCCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHhC
Confidence               68899999999999765210                           1589999999999999999999874

AHBA_syn family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The members of this CD are involved in various biosynthetic pathways for secondary metabolites. Some well studied proteins in this CD are AHBA_synthase, protein product of pleiotropic regulatory gene degT, Arnb aminotransferase and pilin glycosylation protein. The prototype of this family, the AHBA_synthase, is a dimeric PLP dependent enzyme. AHBA_syn is the terminal enzyme of 3-amino-5-hydroxybenzoic acid (AHBA) formation which is involved in the biosynthesis of ansamycin antibiotics, including rifamycin B. Some members of this CD are involved in 4-amino-6-deoxy-monosaccharide D-perosamine synthesis. Perosamine is an important element in the glycosylation of several cell products, such as antibiotics and lipopolysaccharides of gram-positive and gram-negative bacteria. The pilin glycosylation protein

>PRK06767 methionine gamma-lyase; Provisional

Probab=99.87  E-value=3e-21  Score=181.08  Aligned_cols=291  Identities=16%  Similarity=0.129  Sum_probs=190.1

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++++++...+|++.+++++|.+..++++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        53 ~~y~r~~~pt~~~Le~~lA~l~G~~~al~~~sG~~Ai~~~l~al-----~~~G-----d~Vv~~~~~y~~~~~~~~~~~~  122 (386)
T PRK06767         53 YIYSRLGNPTVKLFEERMAVLEGGEEALAFGSGMAAISATLIGF-----LKAG-----DHIICSNGLYGCTYGFLEVLEE  122 (386)
T ss_pred             ccccCCCCcchHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCcHHHHHHHHHHHHh
Confidence            44556778999999999999999999999999999999888777     4567     9999999887443322211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...         .++..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       123 ~~g---------i~~~~~~~~d~~~l~~~i~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~g~~vivD~a~a  186 (386)
T PRK06767        123 KFM---------ITHSFCDMETEADIENKIR---PNTKLIFVETPINPTMKLID----LKQVIRVAKRNGLLVIVDNTFC  186 (386)
T ss_pred             hcC---------eEEEEeCCCCHHHHHHhhC---cCceEEEEeCCCCCCceecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            101         1233334457889988886   57899999999999999998    9999999999999999999996


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCHHHHhhcCCC-CCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPG-EHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .. ..+.+.     ....|++  |++|.++| |. ++ |+++++++.++.+... ........+++.+.++..+++.+. 
T Consensus       187 ~~-~~~~pl-----~~g~Div~~S~sK~l~g~g~-~~gG~v~~~~~~i~~~~~~~~~~~g~~~~~~~a~l~~~~L~tl~-  258 (386)
T PRK06767        187 SP-YLQRPL-----ELGCDAVVHSATKYIGGHGD-VVAGVTICKTRALAEKIRPMRKDIGGIMAPFDAWLLLRGLKTLA-  258 (386)
T ss_pred             cc-ccCCch-----hcCCcEEEecCcceecCCCC-ceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH-
Confidence            21 111221     1233554  67799986 66 65 7788887766554311 111111235565555555554332 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC--
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--  316 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~--  316 (374)
                       ...++.+++..++.+.|++....  ..+.         ...+.|.++.|+++..  .....+|.+.|...++.++-+  
T Consensus       259 -~r~~~~~~~a~~la~~L~~~p~v--~~v~~p~~~~~~~~~~~~gg~vsf~l~~~--~~~~~~f~~~l~~~~~~~s~G~~  333 (386)
T PRK06767        259 -VRMDRHCDNAEKIVSFLKNHDAV--EGVWYPEGELASRQMKRGGGVISFSIKGG--KEETQAFINDLHFITIAVSLGDT  333 (386)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCc--cEEECCCcHHHHHhCCCCCceEEEEEcCC--HHHHHHHHHhCCccEEecCCCCc
Confidence             24566677777777777654211  0111         1123467888888632  125677888887766555321  


Q ss_pred             -------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 -------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 -------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                               ..+.+|+++++    |+.+.+++-|.++++
T Consensus       334 ~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~  384 (386)
T PRK06767        334 ETLIQHPATMTHAAIPAELRQEMGIYDNLIRLSVGL----ESWEDIVSDLEQALK  384 (386)
T ss_pred             CccccCCCccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                                     14689999543    456666777776665

>PRK08249 cystathionine gamma-synthase; Provisional

Probab=99.87  E-value=8.3e-21  Score=178.13  Aligned_cols=293  Identities=14%  Similarity=0.138  Sum_probs=193.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++..++++++|+++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        56 ~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssG~~Ai~~~l~al-----l~~G-----D~Vi~~~~~y~~~~~~~~~~~~  125 (398)
T PRK08249         56 HIYSRNTNPTVQAFEEKVRILEGAEAATAFSTGMAAISNTLYTF-----LKPG-----DRVVSIKDTYGGTNKIFTEFLP  125 (398)
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEcCCchHHHHHHHHHHHh
Confidence            44556789999999999999999999999999999999998877     5567     9999999998664322211110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   +++++++++.+.|++|.+.+    +++|.++|++||+++|+|++|+
T Consensus       126 ~---------~Gi~v~~vd~~d~e~l~~~i~---~~tklV~ie~p~NPtg~v~d----l~~I~~la~~~gi~livD~t~a  189 (398)
T PRK08249        126 R---------MGVDVTLCETGDHEQIEAEIA---KGCDLLYLETPTNPTLKIVD----IERLAAAAKKVGALVVVDNTFA  189 (398)
T ss_pred             h---------CCeEEEEcCCCCHHHHHHhcC---CCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCcC
Confidence            0         012233344458999999887   57899999999999999998    9999999999999999999998


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .+.. ..+     .....|++  |+||.++| |- ++ |++++++++.+.+...........+++.+..+...++.+.  
T Consensus       190 ~~~~-~~~-----l~~~~Divv~S~sK~l~g~~~-~~gG~vv~~~~l~~~l~~~~~~~g~~~s~~~a~l~l~~l~tL~--  260 (398)
T PRK08249        190 TPIN-QNP-----LALGADLVIHSATKFLSGHAD-ALGGVVCGSKELMEQVYHYREINGATMDPMSAYLILRGMKTLK--  260 (398)
T ss_pred             cccc-CCc-----hhhCCCEEeccCceecCCCCC-ceEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhCcchHH--
Confidence            4321 111     12234544  77899986 44 44 5567778887776543333445667777777777776553  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe--
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA--  313 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v--  313 (374)
                      ...++.+++..++.+.|+....    .+|+....         ..+.|.++.|+++.+.  ....+|++.|.--.+.+  
T Consensus       261 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~sf~~~~~~--~~~~~f~~~l~l~~~~~s~  338 (398)
T PRK08249        261 LRVRQQQESAMALAKYLQTHPKVEAVYYPGLETHPNHEIAKAQMRGFGGILSFVLKGGM--DTVKRLLPKLRYAHRAANL  338 (398)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEEcCCH--HHHHHHHHhCCcceEccCC
Confidence            2356667777777777765321    12222111         2245788888886421  12344555443211111  


Q ss_pred             --------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 --------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 --------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              .|.                 .++.+|++.++    |+.+.+++-|.++++
T Consensus       339 G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  392 (398)
T PRK08249        339 GAVETIYGPARTTSHVENTLEERAALGIPEGLVRISVGI----EDTEDLIADLEQAFA  392 (398)
T ss_pred             CCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence                    110                 14789999554    455666666666665

>PRK06234 methionine gamma-lyase; Provisional

Probab=99.87  E-value=7.1e-21  Score=179.13  Aligned_cols=294  Identities=14%  Similarity=0.121  Sum_probs=193.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+.+++++...+|++.|++++|.+.+++++||++|+..++..+     .++|     |+|++.++.|.+..........
T Consensus        56 ~~Y~r~~~p~~~~Le~~iA~~~g~~~~l~~~sG~~Ai~~al~~l-----l~~G-----d~Vl~~~~~y~~~~~~~~~~~~  125 (400)
T PRK06234         56 YIYSRLGNPTSTEVENKLALLEGGEAAVVAASGMGAISSSLWSA-----LKAG-----DHVVASDTLYGCTFALLNHGLT  125 (400)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHH-----hCCC-----CEEEEecCccchHHHHHHHHHh
Confidence            34566778999999999999998889999999999999888777     5667     9999999887543322211000


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEecc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEI  170 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea  170 (374)
                               .....+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++  |+++|+||+
T Consensus       126 ---------~~G~~v~~vd~~d~e~l~~~i~---~~tklI~iesP~NPtG~v~d----l~~I~~la~~~~~~i~livDea  189 (400)
T PRK06234        126 ---------RYGVEVTFVDTSNLEEVRNALK---ANTKVVYLETPANPTLKVTD----IKAISNIAHENNKECLVFVDNT  189 (400)
T ss_pred             ---------hCCeEEEEECCCCHHHHHHHhc---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHhcCCCCEEEEECC
Confidence                     0112344455568999999887   57899999999999999988    99999999997  999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      |+... .+.+.     +...|++  |+||.++| |...+|++++++++.+.++...  .......+++.+..++..++.+
T Consensus       190 ~~~~~-~~~~l-----~~g~Divv~S~sK~l~g~g~~~gG~v~~~~~~~~~l~~~~~~~~~g~~l~p~~a~l~~~~l~tl  263 (400)
T PRK06234        190 FCTPY-IQRPL-----QLGADVVVHSATKYLNGHGDVIAGFVVGKEEFINQVKLFGIKDMTGSVIGPFEAFLIIRGMKTL  263 (400)
T ss_pred             CCchh-cCCch-----hhCCcEEEeeccccccCCCCceeEEEEecHHHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcH
Confidence            97431 11211     2234544  77899986 6613488888988877765321  1223456777776666666543


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          246 RDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      .  ...++.+++..++.+.|+....    .+|+...         ...+.|.++.|.++...  ....+|.+.|.-.++.
T Consensus       264 ~--~r~~~~~~na~~~a~~L~~~~~V~~V~~p~l~~~~~~~~~~~~~~~~g~l~s~~l~~~~--~~~~~f~~~l~~~~~~  339 (400)
T PRK06234        264 Q--IRMEKHCKNAMKVAKFLESHPAVEKVYYPGLESFEYYELAKKQMSLPGAMISFELKGGV--EEGKVVMNNVKLATLA  339 (400)
T ss_pred             H--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCCcHHHHHHhCCCCCceEEEEecCcH--HHHHHHHHhCCcceEe
Confidence            2  2455666677777777764211    1121110         01245778888886321  1345666666544433


Q ss_pred             eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++-+                           .++.+|++.++    |+.+.+++.|.++++
T Consensus       340 ~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~l~R~svGl----E~~~dl~~dl~~al~  396 (400)
T PRK06234        340 VSLGDAETLIQHPASMTHSPYTAEERKEAGISDGLVRLSVGL----EDVDDIIADLKQALD  396 (400)
T ss_pred             ccCCCCCceecCCccCCCCCCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH
Confidence            3111                           14789999554    345556666666665

>cd06450 DOPA_deC_like DOPA decarboxylase family

Probab=99.87  E-value=1.9e-20  Score=174.02  Aligned_cols=283  Identities=18%  Similarity=0.121  Sum_probs=168.9

Q ss_pred             cHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccc---cccCCCC-ccEEEEeccCCCCcccccccccCC
Q 017259           22 KFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYV---KKKFSID-EAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~-~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..+++++++++++|.+    ++++|+||++|+..++.+++.....   ..|.+++ ++.|++.+++|+.....+...+..
T Consensus        39 le~~~~~~~~~~~g~~~~~~~~~~t~ggt~a~~~al~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~h~~~~~~~~~~g~~  118 (345)
T cd06450          39 MEAEVVNWLAKLFGLPSEDADGVFTSGGSESNLLALLAARDRARKRLKAGGGRGIDKLVIVCSDQAHVSVEKAAAYLDVK  118 (345)
T ss_pred             HHHHHHHHHHHHhCCCCCCCCEEEeCChhHHHHHHHHHHHHHhhhhhhcccccccCCeEEEEcCcchhHHHHHHHHHhcC
Confidence            3444555566666764    7999999999999999998642100   0000111 245666665644332222222211


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ....    +...+.    ..|+++|++++++   ++.++++++++.+.+++|.+.+    +++|.++|++||+++++|++
T Consensus       119 ~~~v----~~~~~~----~~d~~~l~~~i~~~~~~~~~~~~v~~~~~~~~tG~~~~----~~~i~~~~~~~~~~l~vD~a  186 (345)
T cd06450         119 VRLV----PVDEDG----RMDPEALEAAIDEDKAEGLNPIMVVATAGTTDTGAIDP----LEEIADLAEKYDLWLHVDAA  186 (345)
T ss_pred             eEEe----eeCCCC----CcCHHHHHHHHHHHHHCCCCcEEEEEecccCCCCCCCC----HHHHHHHHHHhCCeEEEech
Confidence            1110    110110    1279999999974   2236777888888888998887    99999999999999999999


Q ss_pred             ccCCcccccCcccccCC-CCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          171 QSGLARSGRMLASDWEE-VRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~-~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      |+++............. ...|.+  +++|.++++. ++|+++.+                   .+++   .++++.+..
T Consensus       187 ~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~l~~p~-g~g~~~~~-------------------~~~~---~~~l~~l~~  243 (345)
T cd06450         187 YGGFLLPFPEPRHLDFGIERVDSISVDPHKYGLVPL-GCSAVLVR-------------------ALKL---WATLRRFGR  243 (345)
T ss_pred             hhHHHhhChhhHHHhcCccccCEEEEchhHhhCCCc-chHHHHHH-------------------HHHH---HHHHHHHhH
Confidence            98542211100000011 134544  5669888877 88887655                   2333   334444433


Q ss_pred             h---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-CchhHHHHHHHHHHCCeEeccC----CCC
Q 017259          248 E---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-LPVSAYDICLKMKERGILAKPT----HDT  319 (374)
Q Consensus       248 ~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~~l~~~Gi~v~~~----~~~  319 (374)
                      +   +..++..++.+++.+.|+++    +++.....+...++.|.++... .+.+..++.++|.++|+++.+.    ...
T Consensus       244 ~g~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~iv~f~~~~~~~~~~~~~~i~~~L~~~g~~~~~~~~~~~~~  319 (345)
T cd06450         244 DGYGEHIDRIVDLAKYLAELIRAD----PGFELLGEPNLSLVCFRLKPSVKLDELNYDLSDRLNERGGWHVPATTLGGPN  319 (345)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEECCcchhhHHHHHHHHHHHhcCCEEEEeeEECCeE
Confidence            3   44555556666666655543    2222112234556666665410 0115678999999996544332    257


Q ss_pred             EEEEecCCCC-CHHHHHHHHHHHHH
Q 017259          320 IVRLTPPLSI-SSNELQEGSKALHD  343 (374)
Q Consensus       320 ~lRi~~~~~~-~~e~i~~~~~~l~~  343 (374)
                      ++|++++... +++|++++++.|++
T Consensus       320 ~lRis~~~~~~t~~di~~l~~~l~~  344 (345)
T cd06450         320 VLRFVVTNPLTTRDDADALLEDIER  344 (345)
T ss_pred             EEEEEecCCCCCHHHHHHHHHHHHh
Confidence            8999998764 99999999999875

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD correspond to DOPA/tyrosine decarboxylase (DDC), histidine decarboxylase (HDC), and glutamate decarboxylase (GDC). DDC is active as a dimer and catalyzes the decarboxylation of tyrosine. GDC catalyzes the decarboxylation of glutamate and HDC catalyzes the decarboxylation of histidine.

>PF00266 Aminotran_5: Aminotransferase class-V; InterPro: IPR000192 Aminotransferases share certain mechanistic features with other pyridoxal- phosphate dependent enzymes, such as the covalent binding of the pyridoxal- phosphate group to a lysine residue

Probab=99.87  E-value=1.4e-20  Score=176.47  Aligned_cols=282  Identities=17%  Similarity=0.241  Sum_probs=198.2

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+..+++++.+++++|.+   +++|++|++++++.++..+...  .++|     ++|++.+..|++.......+....+ 
T Consensus        42 ~~~~~~~r~~la~~lg~~~~~~v~~~~~~t~a~~~~~~~l~~~--~~~g-----~~vl~~~~~~~s~~~~~~~~~~~~g-  113 (371)
T PF00266_consen   42 AEILEEAREALAKLLGAPPDEEVVFTSNGTEALNAVASSLLNP--LKPG-----DEVLVTSNEHPSNRYPWEEIAKRKG-  113 (371)
T ss_dssp             HHHHHHHHHHHHHHHTSSTTEEEEEESSHHHHHHHHHHHHHHH--GTTT-----CEEEEEESSHHHHHHHHHHHHHHTT-
T ss_pred             hHHHHHHHHHHHHhcCCccccccccccccchhhhhhhhccccc--cccc-----cccccccccccccccccccccccch-
Confidence            344567888899888654   5999999999999999988532  4566     8999999988776533333221101 


Q ss_pred             cccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                              .++..++.     .|++++++.|+   ++++++++....+.+|.+.|    +++|.++||++|+++++|.++
T Consensus       114 --------~~v~~i~~~~~~~~~~~~~~~~l~---~~~~lv~~~~~~~~tG~~~p----i~~I~~~~~~~~~~~~vD~~~  178 (371)
T PF00266_consen  114 --------AEVRVIPADPGGSLDLEDLEEALN---PDTRLVSISHVENSTGVRNP----IEEIAKLAHEYGALLVVDAAQ  178 (371)
T ss_dssp             --------EEEEEEEEGTTSSCSHHHHHHHHH---TTESEEEEESBETTTTBBSS----HHHHHHHHHHTTSEEEEE-TT
T ss_pred             --------hhhccccccccchhhhhhhhhhhc---cccceEEeecccccccEEee----eceehhhhhccCCceeEechh
Confidence                    11112211     27899999997   68999999999999999999    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCC------------------C---
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGST------------------F---  228 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~------------------~---  228 (374)
                      + ++.    ..++...+.+|++++|  | ++|+. ++|++..++++.+.+++...+..                  |   
T Consensus       179 ~-~g~----~~id~~~~~~D~~~~s~~K-l~gp~-G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~G  251 (371)
T PF00266_consen  179 S-AGC----VPIDLDELGADFLVFSSHK-LGGPP-GLGFLYVRPEAIERLRPAKPGGGYLDFPSLQEYGLADDARRFEGG  251 (371)
T ss_dssp             T-TTT----SS--TTTTTESEEEEESTS-TTSSS-TEEEEEEEHHHHHHHHTSSSSSSTTTHHHHHHHCHHSTTTGSSSS
T ss_pred             c-ccc----ccccccccccceeeecccc-cCCCC-chhhheehhhhhhccccccccccccccccchhccccccccccccc
Confidence            8 321    1233334567888666  9 88887 88999999988888854322211                  1   


Q ss_pred             CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCce--eeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYV--KEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      ..+.....+...+++.+.+.   .+.++..++.+++++.|+++...  .+.  .....++.++.+.++..    +..++.
T Consensus       252 T~~~~~~~~l~~al~~~~~~g~~~i~~~~~~l~~~~~~~l~~~~~~--~~~~~~~~~~~~~i~~~~~~~~----~~~~~~  325 (371)
T PF00266_consen  252 TPNVPAIYALNEALKLLEEIGIERIRERIRELAEYLREALEELPGI--EVLGPDDEPRRPSIVSFNLPGS----DADDVV  325 (371)
T ss_dssp             S--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTE--EESSSSCGGBGTTEEEEEETTS----SHHHHH
T ss_pred             ceeeehhhhHHHHHhhhhccccccchhhhhhHHHHHHhhhhcCCce--eEeeecccccccceEEEeecCC----CHHHHH
Confidence            35666677777788877442   45566666777777766664321  010  12234567777777554    689999


Q ss_pred             HHHHHCCeEeccCC------------CCEEEEecCCCCCHHHHHHH
Q 017259          304 LKMKERGILAKPTH------------DTIVRLTPPLSISSNELQEG  337 (374)
Q Consensus       304 ~~l~~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~  337 (374)
                      +.|.++||.++.+.            .+.+|++++..+|++|++++
T Consensus       326 ~~L~~~~I~~~~G~~~~~~~~~~~~~~~~iRvS~~~~nt~~dv~~l  371 (371)
T PF00266_consen  326 KYLEERGIAVSTGSACAGPSLDILGMGGVIRVSLHYYNTEEDVDRL  371 (371)
T ss_dssp             HHHHHHTEEEEESTTTCHHHHHHHHTTTEEEEE-GTTSSHHHHHHH
T ss_pred             HHHhhcCEEEeccCcccHHHHHHhCCCCEEEEeccCCCCHHHHhhC
Confidence            99999999998742            38999999999999999975

On the basis of sequence similarity, these various enzymes can be grouped [] into subfamilies. This entry represents the class V aminotransferases and the related, though functionally distinct, cysteine desulfurases.; GO: 0008152 metabolic process; PDB: 3FFR_A 1N2T_B 1ELQ_A 1N31_A 1ELU_B 1QZ9_A 1VJO_A 3ISL_B 1BJO_B 1BJN_B ....

>KOG1359 consensus Glycine C-acetyltransferase/2-amino-3-ketobutyrate-CoA ligase [Amino acid transport and metabolism]

Probab=99.87  E-value=1.8e-20  Score=159.02  Aligned_cols=302  Identities=17%  Similarity=0.211  Sum_probs=208.8

Q ss_pred             hHHHHHHHhccccC-c----CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS-R----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~----~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|-.+++++..... +    .++...+..|+.+++.+.+.|..++.+++..|+..++.+++.+     .     |-|+..
T Consensus        88 ~a~~~aleeyGaGlssvrfIcGtq~iHk~LE~kiAqfh~rED~ilypscfdANag~feail~p-----e-----dAvfSD  157 (417)
T KOG1359|consen   88 NAGQKALEEYGAGLSSVRFICGTQDIHKLLESKIAQFHGREDTILYPSCFDANAGAFEAILTP-----E-----DAVFSD  157 (417)
T ss_pred             HHHHHHHHHhCCCccceeEEecchHHHHHHHHHHHHHhCCCceEEeccccccchHHHHHhcCh-----h-----hhhhcc
Confidence            34455565533321 1    2667788999999999999999999999999999999988532     1     334333


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh-cCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      + --|......+-+.                ....+-|+-+++..+.. .+-+.++++.....++.|.+.|    +++|.
T Consensus       158 e-LNhASIIdGirLc----------------kry~h~dv~~l~~~l~~a~k~r~klv~TDg~FSMDGdiaP----l~ei~  216 (417)
T KOG1359|consen  158 E-LNHASIIDGIRLC----------------KRYRHVDVFDLEHCLISACKMRLKLVVTDGVFSMDGDIAP----LEEIS  216 (417)
T ss_pred             c-cccchhhhhhHHH----------------hhhccchhHHHHHHHHHhhhheEEEEEecceeccCCCccc----HHHHH
Confidence            2 2244433332222                12222367777766653 2246888999999999999999    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCC
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG  229 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~  229 (374)
                      +++++||.++++||+|+ | +|.+|...+ +.++.  ++|++  +++|++||.  ..||+.++++++..+++....+-|+
T Consensus       217 ~La~kYgaLlfiDecHaTgf~G~tGrGt~-E~~~vm~~vdiinsTLgKAlGga--~GGyttgp~~li~llrqr~RpylFS  293 (417)
T KOG1359|consen  217 QLAKKYGALLFIDECHATGFFGETGRGTA-EEFGVMGDVDIINSTLGKALGGA--SGGYTTGPKPLISLLRQRSRPYLFS  293 (417)
T ss_pred             HHHHhcCcEEEEeecccceeecCCCCChH-HHhCCCCcceehhhhhhhhhcCC--CCCCccCChhHHHHHHhcCCceeec
Confidence            99999999999999998 4 465665422 44443  45554  889998854  3577999999998888765544443


Q ss_pred             C--CHHHHHHHHHHHHHH-hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          230 G--NPLASAVAIASLDVI-RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       230 ~--~~~~~~aa~~al~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .  ++-....+..+++.+ .......+.+.+.+++++.++..+..+      ....-++..+.+.+..   .+.+.+++|
T Consensus       294 nslppavV~~a~ka~dllm~s~~~i~~~~a~~qrfr~~me~aGftI------sg~~hPI~pv~lGda~---lA~~~ad~l  364 (417)
T KOG1359|consen  294 NSLPPAVVGMAAKAYDLLMVSSKEIQSRQANTQRFREFMEAAGFTI------SGASHPICPVMLGDAR---LASKMADEL  364 (417)
T ss_pred             CCCChhhhhhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhcCcee------cCCCCCccceecccHH---HHHHHHHHH
Confidence            3  222233344455543 345778899999999999998764321      1111233333343332   678899999


Q ss_pred             HHCCeEec-------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          307 KERGILAK-------PTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       307 ~~~Gi~v~-------~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++.||++-       |.+..-+|+.++..+|+||+|++++++.++.+
T Consensus       365 Lk~Gi~Vigfs~PvVP~gkariRVqiSAaHt~edid~~i~Af~~vgr  411 (417)
T KOG1359|consen  365 LKRGIYVIGFSYPVVPKGKARIRVQISAAHTEEDIDRLIEAFSEVGR  411 (417)
T ss_pred             HhcCceEEeecCCcCCCCceEEEEEEehhcCHHHHHHHHHHHHHHHH
Confidence            99999883       33567899999999999999999999999887

>TIGR01325 O_suc_HS_sulf O-succinylhomoserine sulfhydrylase

Probab=99.87  E-value=3.5e-21  Score=180.20  Aligned_cols=257  Identities=15%  Similarity=0.187  Sum_probs=170.6

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...++++.++++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        46 ~~y~r~~~p~~~~le~~la~l~g~~~~~~~~sG~~Ai~~al~al-----~~~G-----d~Vl~~~~~~~~t~~~~~~~~~  115 (380)
T TIGR01325        46 FVYSRYANPTVAAFEERIAALEGAERAVATATGMSAIQAALMTL-----LQAG-----DHVVASRSLFGSTVGFISEILP  115 (380)
T ss_pred             cceecCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEecCCcchHHHHHHHHHH
Confidence            34456778899999999999999999999999999999999877     4566     8999988776433221111110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               .....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       116 ---------~~g~~v~~v~~~d~~~l~~~i~---~~tklV~le~p~np~g~~~d----l~~I~~la~~~gi~livD~a~~  179 (380)
T TIGR01325       116 ---------RFGIEVSFVDPTDLNAWEAAVK---PNTKLVFVETPSNPLGELVD----IAALAELAHAIGALLVVDNVFA  179 (380)
T ss_pred             ---------HhCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCc
Confidence                     0113355566668899988876   57899999999999999988    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .+.. ..+     ....+|++  |++|.++| |. ++ |++++++++.+.++..........+++.+..++..++.+.. 
T Consensus       180 ~~~~-~~p-----l~~g~Divv~S~sK~l~g~g~-~~gG~vv~~~~~~~~l~~~~~~~g~~~~p~~a~~~l~~l~tl~~-  251 (380)
T TIGR01325       180 TPVL-QQP-----LKLGADVVVYSATKHIDGQGR-VMGGVIAGSEELMAEVAVYLRHTGPAMSPFNAWVLLKGLETLSL-  251 (380)
T ss_pred             cccc-CCc-----hhhCCCEEEeeccceecCCCC-eEEEEEEeCHHHHHHHHHHHHhhCCCCCHHHHHHHHhccCcHHH-
Confidence            3211 111     12345665  67899986 55 55 66777888777766432222233455555555555554432 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------EEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------VRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                       ..++..++..++.+.|++...    .+|+....         ..+.|.++.|++++.   .....|.+.|.
T Consensus       252 -r~~~~~~~a~~la~~L~~~p~v~~V~yp~l~s~~~~~~~~~~~~g~g~~~s~~l~~~---~~~~~f~~~l~  319 (380)
T TIGR01325       252 -RMQKQFDSALAIAEWLQAQPQVQAVYYPGLPDHPQHELARRQQSGGGTVIGFDVADR---AAAWKVLDAVE  319 (380)
T ss_pred             -HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH---HHHHHHHHcCC
Confidence             356666677777777765321    12211111         124578888888621   14555666553

This model describes O-succinylhomoserine sulfhydrylase, one of several related pyridoxal phosphate-dependent enzymes of cysteine and methionine metabolism. This enzyme is part of an alternative pathway of homocysteine biosynthesis, a step in methionine biosynthesis.

>PRK07049 methionine gamma-lyase; Validated

Probab=99.87  E-value=8.5e-21  Score=179.54  Aligned_cols=296  Identities=15%  Similarity=0.172  Sum_probs=192.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++++++....|++.|+++.+.+.+++++||++|+..++..+     .++|     |+|++..|.|.+..........
T Consensus        75 ~~y~R~~~Pt~~~Le~~lA~leg~~~~iv~~sG~~Ai~~~l~al-----~~~G-----d~Vv~~~p~Y~~~~~~~~~~l~  144 (427)
T PRK07049         75 LVYSRFNHPNSEIVEDRLAVYEGAESAALFSSGMSAIATTLLAF-----VRPG-----DVILHSQPLYGGTETLLAKTFR  144 (427)
T ss_pred             ccccCCCCcCHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHH-----hCCC-----CEEEEcCCCcccHHHHHHHHHH
Confidence            34566889999999999999999999999999999999988887     5667     9999999999876544221100


Q ss_pred             CccccccCCCCCCC-ceeccCCCHHHHHHHHHhc--CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh------cCC
Q 017259           93 DNEAIRGFGPLLPG-HLKVDFGDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNI  163 (374)
Q Consensus        93 ~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~--~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~------~~i  163 (374)
                      ..+         .. +.+....|.+++++.+.+.  .++++++++++++||+|.+.+    +++|.+++++      +++
T Consensus       145 ~~G---------i~~v~~~~~~d~~~l~~~l~~~~~~~~tklv~lesP~NPtg~v~d----~~~l~~la~~~~~~~~~~~  211 (427)
T PRK07049        145 NFG---------VGAVGFADGLSEAAIGAAAEAAAAKGRVSLILIETPANPTNSLVD----VAAVRRVADAIEARQGHRP  211 (427)
T ss_pred             hcC---------cEEEEEeCCCCHHHHHHHHHhhccCCCceEEEEECCCCCCCcccC----HHHHHHHHHHhhhcccCCC
Confidence            000         11 1111223678888777532  247899999999999999986    6666666655      899


Q ss_pred             EEEEeccccCCcccccCcccccCCCCCcEE--Eeccccc--CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          164 LMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALG--GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       164 ~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~--~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      ++|+||+|.++.... ++     ....|++  |+||.++  +|+ ++||+++++++.+.+.........+.+++.+.++.
T Consensus       212 ~vvvDety~~~~~~~-pl-----~~g~divv~S~SK~~gG~~gl-r~G~vv~~~~l~~~l~~~~~~~g~~ls~~~a~l~~  284 (427)
T PRK07049        212 IIACDNTLLGPVFQK-PL-----EHGADLSVYSLTKYVGGHSDL-VAGAVLGRKALIRQVRALRSAIGTQLDPHSCWMLG  284 (427)
T ss_pred             EEEEECCccccccCC-cc-----ccCCCEEEEcCceeecCCCCc-EEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHH
Confidence            999999986432111 11     1123544  8999999  488 99999999888887765433334556888888777


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCce--e---------eEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYV--K---------EVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~--~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      ..++.+.  ...++..++..++.+.|++...    .+|+..  .         ...+.|.++.|++....  .....|++
T Consensus       285 r~L~tl~--~R~~~~~~~a~~la~~L~~~p~V~~v~yp~~l~~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~  360 (427)
T PRK07049        285 RSLETLV--LRMERANRNARAVAEFLRDHPKVEKLHYLPFLDPDSAYGAVYKRQCTGAGSTFSFDIKGGQ--AAAFRFLN  360 (427)
T ss_pred             cCCChHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCCCccHHHHHhhCCCCccEEEEEEcCCH--HHHHHHHH
Confidence            7776542  2345556677777777765421    122211  0         01245778888886321  13445555


Q ss_pred             HHHHCCeEe----------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILA----------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v----------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|.--.+.+          .|.                 ..+.+|++.++    |+.+.+++-|.++++
T Consensus       361 ~l~l~~~~~slG~~~sli~~~~~~~h~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  425 (427)
T PRK07049        361 ALQIFKLAVSLGGTESLASHPASMTHSGVPADVRERIGVLESTIRLSIGI----EHPDDLIADLAQALD  425 (427)
T ss_pred             cCcccEEcccCCCCCceeeCCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence            553222111          110                 14689999443    456667777777765

>TIGR03403 nifS_epsilon cysteine desulfurase, NifS family, epsilon proteobacteria type

Probab=99.87  E-value=5.8e-20  Score=172.97  Aligned_cols=288  Identities=14%  Similarity=0.153  Sum_probs=182.0

Q ss_pred             HHHHHHHhccc---C---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           24 PVFAERLTSMF---G---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        24 ~~l~~~l~~~~---~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..+++.++++.   +   .+++++|+|++++++.++..+......++|    +++|++....|++.......+... +  
T Consensus        42 ~~l~~a~~~~~~~~~~~~~~~i~~t~g~teal~~~~~~~~~~~~~~~~----~~~vi~~~~e~ps~~~~~~~~~~~-G--  114 (382)
T TIGR03403        42 PAIAEALDKLYKGINARDLDDIIITSCATESNNWVLKGVYFDEILKGG----KNHIITTEVEHPAVRATCAFLESL-G--  114 (382)
T ss_pred             HHHHHHHHHHHHHcCcCCCCeEEEeCCHHHHHHHHHHHHHHhhcccCC----CCEEEEcCCccHHHHHHHHHHHHC-C--
Confidence            34555544433   3   468999999999999998876311101222    267888876654433222211110 1  


Q ss_pred             ccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                             ..+..++.+     |+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++++|++++
T Consensus       115 -------~~v~~v~~~~~g~~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~~ivD~a~~  180 (382)
T TIGR03403       115 -------VEVTYLPINEQGTITAEQVREAIT---EKTALVSVMWANNETGMIFP----IKEIGEICKERGVLFHTDAVQA  180 (382)
T ss_pred             -------CEEEEEecCCCCCCCHHHHHHhcc---cCCeEEEEEcccCCCccccC----HHHHHHHHHHcCCEEEEechhh
Confidence                   112222221     6888988886   46889999999999999998    9999999999999999999987


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-------CCCCCCCCHHHHHHHHHHHH
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~aa~~al~  243 (374)
                       ++.  .  ..+......|++++|  |.++ +. ++|+++.++..  .+.+..       ....++.+..++.++.++++
T Consensus       181 -~g~--~--~~~~~~~~~D~~~~s~~K~~g-p~-G~g~l~vr~~~--~~~p~~~g~~~~~~~~~gt~~~~~~~al~~al~  251 (382)
T TIGR03403       181 -IGK--I--PVDVQKAGVDFLSFSAHKFHG-PK-GVGGLYIRKGV--ELTPLFHGGEHMGGRRSGTLNVPYIVAMGEAMR  251 (382)
T ss_pred             -cCC--C--ccCccccCCCEEEEcchhhCC-CC-ceEEEEECCCC--CCCCcccCCCCCCCcccCCcChHHHHHHHHHHH
Confidence             211  1  122233456777666  9654 32 45676666543  122211       11234567778878888887


Q ss_pred             HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE---EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259          244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-  317 (374)
Q Consensus       244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-  317 (374)
                      ...+  +...++.+...+++.+.|+++    +++....   ...+.++.+.++..    +..++.+.|.++||.++.+. 
T Consensus       252 ~~~~~~~~~~~~~~~l~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~gI~v~~g~~  323 (382)
T TIGR03403       252 LANEYLDFEKSHVRRLRDRLEDALLEL----PDVFVVGDREHRVPNTILISIKGV----EGEAMLWDLNKAGIAASTGSA  323 (382)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHhcC----CCEEEECCCCCCcCCEEEEEeCCC----CHHHHHHhhccCCEEEEchhc
Confidence            6543  123345555555555555442    2221111   11244556666543    57788888999999998521 


Q ss_pred             ----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          318 ----------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       318 ----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                                            .+.+|++++..+|++|++++++.|+++++ ++.
T Consensus       324 c~~~~~~~~~v~~~~g~~~~~~~~~iR~s~~~~~t~~did~~~~~l~~~~~-~~~  377 (382)
T TIGR03403       324 CASEDLEANPVMVAIGADKELAHTAIRLSLSRFTTEEEIDYTIEVFKKAVQ-RLR  377 (382)
T ss_pred             cCCCCCCcCHHHHHcCCChHHhCeeEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence                                  25799999999999999999999999987 653

Members of this family are the NifS-like cysteine desulfurase of the epsilon division of the Proteobacteria, similar to the NifS protein of nitrogen-fixing bacteria. Like NifS, and unlike IscS, this protein is found as part of a system of just two proteins, a cysteine desulfurase and a scaffold, for iron-sulfur cluster biosynthesis. This protein is called NifS by Olsen, et al. (PubMed:11123951), so we use this designation.

>PRK08247 cystathionine gamma-synthase; Reviewed

Probab=99.86  E-value=1.3e-20  Score=175.62  Aligned_cols=288  Identities=13%  Similarity=0.138  Sum_probs=185.5

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++++++...+|+++|+++.|.+..++++||++|+..++. +     .++|     |+|++.++.|++..........
T Consensus        44 ~~y~r~~~pt~~~le~~la~l~g~~~~~~~~sG~~ai~~~~~-l-----l~~G-----d~Vl~~~~~y~~t~~~~~~~~~  112 (366)
T PRK08247         44 FDYSRTGNPTRGVLEQAIADLEGGDQGFACSSGMAAIQLVMS-L-----FRSG-----DELIVSSDLYGGTYRLFEEHWK  112 (366)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHH-H-----hCCC-----CEEEEecCCcCcHHHHHHHHhh
Confidence            445668899999999999999999989999999999987653 3     3466     9999999999774332221111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   ++++++++++++|+++...+    +++|.++|++||+++|+|++|.
T Consensus       113 ~---------~G~~v~~vd~~d~~~l~~~i~---~~tklv~le~P~NP~~~~~d----l~~I~~la~~~g~~lIvD~t~~  176 (366)
T PRK08247        113 K---------WNVRFVYVNTASLKAIEQAIT---PNTKAIFIETPTNPLMQETD----IAAIAKIAKKHGLLLIVDNTFY  176 (366)
T ss_pred             c---------cCceEEEECCCCHHHHHHhcc---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         113344555568999999887   57899999999888876555    9999999999999999999995


Q ss_pred             -CCcccccCcccccCCCCCcEEEecccccC--CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 -GLARSGRMLASDWEEVRPDMVILGKALGG--GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 -~~~~~g~~~~~~~~~~~~d~~s~sK~~~~--G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                       ++.  ..+.   ..+.+.-+.|+||.++|  +. ..|+++.+ +++.+.+...........+++.+..+...++.+.  
T Consensus       177 ~~~~--~~p~---~~g~di~i~S~sK~~~g~~d~-~~G~iv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~l~tl~--  248 (366)
T PRK08247        177 TPVL--QRPL---EEGADIVIHSATKYLGGHNDV-LAGLVVAKGQELCERLAYYQNAAGAVLSPFDSWLLIRGMKTLA--  248 (366)
T ss_pred             cccc--cCch---hcCCcEEEeecceeccCCCce-eeeEEecChHHHHHHHHHHHHhcCCCCChHHHHHHHhccCcHH--
Confidence             221  1111   11222224488899985  45 67888876 5666666533333344556777766666665432  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHH----------CCeEeccC-
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKE----------RGILAKPT-  316 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~----------~Gi~v~~~-  316 (374)
                      ...++.+++.+.+.+.|++.    |.+... .++.|.++.|.++..   .....|.+.+.-          +.+++.|. 
T Consensus       249 ~r~~~~~~~a~~l~~~L~~~----p~v~~v~~P~~gg~~sf~~~~~---~~~~~~~~~l~~~~~~~slg~~~sl~~~p~~  321 (366)
T PRK08247        249 LRMRQHEENAKAIAAFLNEQ----PGVTDVLYPGRGGMLSFRLQDE---EWVNPFLKSLKLITFAESLGGVESFITYPAT  321 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhC----CCeeEEecCCcCcEEEEEECCH---HHHHHHHHcCCcceEccCCCCCceEEECCcc
Confidence            23445566666666666543    333322 333677888877531   123334443221          12333332 


Q ss_pred             ----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                      ..+.+|++.+    -|+.+.+++-|.++++
T Consensus       322 ~~~~~~~~~~r~~~gi~~~~~R~svG----lE~~~dl~~dl~~al~  363 (366)
T PRK08247        322 QTHADIPEEIRIANGVCNRLLRFSVG----IENVEDLIADLKQAFK  363 (366)
T ss_pred             cccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence                            1468899844    3466667777777776

>COG0075 Serine-pyruvate aminotransferase/archaeal aspartate aminotransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=1.8e-19  Score=163.57  Aligned_cols=296  Identities=19%  Similarity=0.240  Sum_probs=216.0

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ...+.++.+.|...++.+   -.+++.||+.++++++..+     +++|     |+|++...+.+|....-+.-..... 
T Consensus        37 ~~~~~~~~~~L~~v~~t~~~~~~ll~gsGt~amEAav~sl-----~~pg-----dkVLv~~nG~FG~R~~~ia~~~g~~-  105 (383)
T COG0075          37 VGIMKEVLEKLRKVFGTENGDVVLLSGSGTLAMEAAVASL-----VEPG-----DKVLVVVNGKFGERFAEIAERYGAE-  105 (383)
T ss_pred             HHHHHHHHHHHHHHhcCCCCcEEEEcCCcHHHHHHHHHhc-----cCCC-----CeEEEEeCChHHHHHHHHHHHhCCc-
Confidence            556777788888877644   4688899999999999988     6778     9999888888786544332221101 


Q ss_pred             cccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           97 IRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                              ..+...++   -|+++++++|+++ +..+++.+.+.-.+||.+.|    +++|+++|++||.++|+|.+-+ 
T Consensus       106 --------v~~~~~~wg~~v~p~~v~~~L~~~-~~~~~V~~vH~ETSTGvlnp----l~~I~~~~k~~g~l~iVDaVsS-  171 (383)
T COG0075         106 --------VVVLEVEWGEAVDPEEVEEALDKD-PDIKAVAVVHNETSTGVLNP----LKEIAKAAKEHGALLIVDAVSS-  171 (383)
T ss_pred             --------eEEEeCCCCCCCCHHHHHHHHhcC-CCccEEEEEeccCcccccCc----HHHHHHHHHHcCCEEEEEeccc-
Confidence                    11111112   1899999999965 56778888888889999999    9999999999999999999977 


Q ss_pred             CcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC------------------CCCCCCCCCHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------------------EHGSTFGGNPLAS  235 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~  235 (374)
                      +|  |..+..+.|+++.-+...-|++++.- ++|++..+++..+.+...                  ...+.|+++....
T Consensus       172 ~G--g~~~~vd~wgiDv~itgSQK~l~~PP-Gla~v~~S~~a~e~~~~~~~~~~ylDL~~~~~~~~~~~~~p~Tppv~~i  248 (383)
T COG0075         172 LG--GEPLKVDEWGIDVAITGSQKALGAPP-GLAFVAVSERALEAIEERKHPSFYLDLKKWLKYMEKKGSTPYTPPVNLI  248 (383)
T ss_pred             CC--CcccchhhcCccEEEecCchhccCCC-ccceeEECHHHHHHHhcCCCCceeecHHHHHHHHhhcCCCCCCCCHHHH
Confidence            32  44556666666443334459999765 668888888777766532                  1244567788888


Q ss_pred             HHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC-Ce
Q 017259          236 AVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GI  311 (374)
Q Consensus       236 ~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi  311 (374)
                      .+..++++.+.++   +..++.+...+.+++.+++++..+  +............+..|.+.   +..++...++++ |+
T Consensus       249 ~aL~~al~~i~~EGle~r~~RH~~~~~a~r~~~~alGl~~--~~~~~~~s~tvta~~~P~g~---~~~~~~~~~~~~~g~  323 (383)
T COG0075         249 YALREALDLILEEGLEARIARHRRLAEALRAGLEALGLEL--FADPERRSPTVTAIKVPEGV---DDKKVRRALLKEYGV  323 (383)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCcc--ccCcccCCCceEEEECCCCC---CcHHHHHHHHHhCCE
Confidence            8999999998776   567788888889999998886442  23333445677777777654   444555566655 99


Q ss_pred             EeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          312 LAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       312 ~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+..+.    +..+||.-.-..+.+++...+.+|..++. ++
T Consensus       324 ~i~gg~~~l~gkifRIGhMG~~~~~dv~~~l~ale~~L~-~~  364 (383)
T COG0075         324 EIAGGQGPLKGKIFRIGHMGNVRPEDVLAALAALEAALR-EL  364 (383)
T ss_pred             EecccccccCccEEEEecCccCCHHHHHHHHHHHHHHHH-Hc
Confidence            998763    57999976668899999999999999998 65

>PLN02651 cysteine desulfurase

Probab=99.86  E-value=2.2e-20  Score=174.61  Aligned_cols=276  Identities=15%  Similarity=0.144  Sum_probs=184.0

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +.+++++++++++++.  +++++++|+|++++.++..+.... .++|     ++|++.+..|++.......+... +   
T Consensus        43 ~~~~~~r~~la~~~g~~~~~v~~t~~~t~a~~~~l~~~~~~~-~~~g-----~~vl~~~~~h~s~~~~~~~~~~~-g---  112 (364)
T PLN02651         43 DAVEKARAQVAALIGADPKEIIFTSGATESNNLAIKGVMHFY-KDKK-----KHVITTQTEHKCVLDSCRHLQQE-G---  112 (364)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhc-cCCC-----CEEEEcccccHHHHHHHHHHHhc-C---
Confidence            4466788999998865  489999999999999988774321 3456     88998877764432222221110 1   


Q ss_pred             cCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                            ..+..++.     .|+++++++++   ++++++++.++++++|.+.+    +++|.++|++||+++++|.+|+ 
T Consensus       113 ------~~v~~v~~~~~~~~d~~~l~~~i~---~~t~lv~v~~~~n~tG~~~~----l~~I~~~~~~~g~~~~vD~a~~-  178 (364)
T PLN02651        113 ------FEVTYLPVKSDGLVDLDELAAAIR---PDTALVSVMAVNNEIGVIQP----VEEIGELCREKKVLFHTDAAQA-  178 (364)
T ss_pred             ------CEEEEEccCCCCcCCHHHHHHhcC---CCcEEEEEECCCCCceeccc----HHHHHHHHHHcCCEEEEEcchh-
Confidence                  11112221     17899999887   57899999999999999998    9999999999999999999998 


Q ss_pred             CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCC-------CCCCCCHHHHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDV  244 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~aa~~al~~  244 (374)
                      ++   . ..++...+..|++++|  |. +|+. ++|+++.+++....+.+...+       ...+.+..+..++.++++.
T Consensus       179 ~g---~-~~~~~~~~~~D~~~~s~hK~-~gp~-G~g~l~v~~~~~~~l~p~~~g~~~~~~~~~GT~~~~~~~~l~~al~~  252 (364)
T PLN02651        179 VG---K-IPVDVDDLGVDLMSISGHKI-YGPK-GVGALYVRRRPRVRLEPLMSGGGQERGRRSGTENTPLVVGLGAACEL  252 (364)
T ss_pred             hC---C-cccCcccCCCCEEEechhhh-CCCC-ceEEEEEcCCCCCCCCccccCCCccCCccCCCccHHHHHHHHHHHHH
Confidence            21   1 1223334556888766  85 5555 678888888766666543221       1235577777888888887


Q ss_pred             Hhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCc--eee--E-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259          245 IRDE--KLAERSAHLGEELRQHLFKIQQQFPNY--VKE--V-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH  317 (374)
Q Consensus       245 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~--~~~--~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  317 (374)
                      +.+.  ++.++.+.+.+++++.|++.   +|++  ...  . ...+.++.|.++..    +..++.+.|.+  |.++.+.
T Consensus       253 ~~~~~~~i~~~~~~l~~~l~~~l~~~---~~~~~i~~~~~~~~~~~~i~~~~~~~~----~~~~~~~~L~~--i~v~~g~  323 (364)
T PLN02651        253 AMKEMDYDEKHMKALRERLLNGLRAK---LGGVRVNGPRDPEKRYPGTLNLSFAYV----EGESLLMGLKE--VAVSSGS  323 (364)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHhh---CCCEEEECCCCcccCcCCEEEEEeCCC----CHHHHHHHhCC--EEEEchh
Confidence            7542  34556666666666666542   2222  111  1 11245677766543    57788888865  7775331


Q ss_pred             -----------------------CCEEEEecCCCCCHHHHH
Q 017259          318 -----------------------DTIVRLTPPLSISSNELQ  335 (374)
Q Consensus       318 -----------------------~~~lRi~~~~~~~~e~i~  335 (374)
                                             .+.+|+|++..+|++|+|
T Consensus       324 ~c~~~~~~~~~~~~~~g~~~~~~~~~vR~S~~~~~t~~did  364 (364)
T PLN02651        324 ACTSASLEPSYVLRALGVPEEMAHGSLRLGVGRFTTEEEVD  364 (364)
T ss_pred             hcCCCCCCcCHHHHHcCCChHHhCceEEEEcCCCCCHHHcC
Confidence                                   368999999999999975

>COG3977 Alanine-alpha-ketoisovalerate (or valine-pyruvate) aminotransferase [Amino acid transport and metabolism]

Probab=99.86  E-value=1.1e-19  Score=154.73  Aligned_cols=315  Identities=13%  Similarity=0.152  Sum_probs=202.4

Q ss_pred             cCcCCCCCcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           14 SSRAFYNDKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        14 ~~~~~~~~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .++.+...+.+.+++.|.+.+|.    +++.+|+|..++.-.+.-++..+  ...|.  .+..++-..|.|-|+-.....
T Consensus        71 ~~pQG~~~li~ala~~l~~~ygwnit~~NIalTnGSQs~fFYlfNlF~G~--~sdG~--~k~illPLaPeYiGY~d~~l~  146 (417)
T COG3977          71 DGPQGKAVLIDALAKMLRREYGWNITAQNIALTNGSQSAFFYLFNLFAGR--RSDGT--EKKILLPLAPEYIGYADAGLE  146 (417)
T ss_pred             CCCcchhHHHHHHHHHHHHHhCCCCccceeeecCCccchHHHHHHHhcCc--cCCCc--ceeEeeccChhhccccccccC
Confidence            33445566667788888887754    47899999988888888877532  33441  224455667788776544332


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      -..-..++...... +...+.-+.|.+.|.  +.   +++.+++++-+-|+||.+. +.+++.+|.++++.||+++|+|.
T Consensus       147 ~d~fVs~kP~iel~-~~g~FKY~vDF~~l~--i~---e~~g~ic~SRPtNPTGNVl-TdeE~~kldalA~~~giPliIDn  219 (417)
T COG3977         147 EDLFVSAKPNIELL-PAGQFKYHVDFEHLH--IG---ESTGAICVSRPTNPTGNVL-TDEELAKLDALARQHGIPLIIDN  219 (417)
T ss_pred             ccceeeccCCcccc-cccceeeccCHHHcc--cc---cccceEEecCCCCCCCCcc-cHHHHHHHHHHhhhcCCcEEEec
Confidence            11111111111111 111111122666654  22   6899999999999999988 99999999999999999999999


Q ss_pred             cccCCcccccCcccccCCCCCcEE---EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH--
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMV---ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV--  244 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~---s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~--  244 (374)
                      +|+-. +.+-.|.-...-+.++++   |+||.=-+|. |+|.++++++++..+.......+..+..++.+.+...++.  
T Consensus       220 AYg~P-FP~iifsd~~~~w~~NiilC~SLSK~GLPG~-R~GIiIane~viqaitnmn~iisLap~~~G~Aia~~mie~gd  297 (417)
T COG3977         220 AYGVP-FPGIIFSDATPLWNENIILCMSLSKLGLPGS-RCGIIIANEKVIQAITNMNGIISLAPGRMGPAIAAEMIESGD  297 (417)
T ss_pred             ccCCC-CCceecccccccCCCCEEEEeehhhcCCCCc-ceeEEEccHHHHHHHHhccceeeecCCCccHHHHHHHhhcch
Confidence            99721 112111111123455544   6667433688 9999999999999998765556666666666666555443  


Q ss_pred             ---HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----
Q 017259          245 ---IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----  317 (374)
Q Consensus       245 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----  317 (374)
                         +.++-++.-++.+.......|+.....+| .....+....|.|+.+.+.+  .+..++++.|+.+|+++.|++    
T Consensus       298 l~rlseqVIrPFY~~~~q~~~~~l~~~lp~~~-~~iHkpEGAIFlWLWf~dLP--Itt~~LYq~LKa~Gvl~VPG~~FFp  374 (417)
T COG3977         298 LLRLSEQVIRPFYRNRVQTTIAILRRYLPEYR-CLIHKPEGAIFLWLWFKDLP--ITTEELYQRLKARGVLMVPGHYFFP  374 (417)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHHHHhcCccc-eeeecCCcceeehhhhccCC--CCHHHHHHHHHhCeEEEecccccCC
Confidence               11222334444455555555555544432 22222333455565555543  267899999999999998863    


Q ss_pred             ---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 ---------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               ..++|++  +.-+++++++.+.+|.+.++
T Consensus       375 Gl~~ewpH~hqC~Rmn--~~~~~~~ie~Gva~lae~ve  410 (417)
T COG3977         375 GLDKEWPHTHQCMRMN--YVPEPEKIEKGVAILAEEVE  410 (417)
T ss_pred             CCCCCCCCccceEEEe--cCCCHHHHHHHHHHHHHHHH
Confidence                     5799999  88899999999999998887

>PRK11658 UDP-4-amino-4-deoxy-L-arabinose--oxoglutarate aminotransferase; Provisional

Probab=99.86  E-value=6.3e-20  Score=171.93  Aligned_cols=306  Identities=15%  Similarity=0.150  Sum_probs=192.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.+..+..    +..+...+|++++++++|.+++++++||++|+.+++.++.    .++|     |+|++.+++|.
T Consensus        18 ~~~~~~l~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~lal~al~----~~~G-----d~Viv~~~~~~   84 (379)
T PRK11658         18 AAVKEVLRSGWI----TTGPKNQALEQAFCQLTGNQHAIAVSSATAGMHITLMALG----IGPG-----DEVITPSLTWV   84 (379)
T ss_pred             HHHHHHHHcCCc----cCCHhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHcC----CCCC-----CEEEECCCcHH
Confidence            345555554433    3366789999999999999999999999999999998773    4567     99999999987


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +........+..+.+        .++..-.+ .|+++++++++   +++++++..+   ++|...+    +++|.++|++
T Consensus        85 ~~~~~~~~~G~~~v~--------vd~~~~~~~~d~~~l~~~i~---~~tkav~~~~---~~G~~~d----~~~i~~~a~~  146 (379)
T PRK11658         85 STLNMIVLLGATPVM--------VDVDRDTLMVTPEAIEAAIT---PRTKAIIPVH---YAGAPAD----LDAIRAIGER  146 (379)
T ss_pred             HHHHHHHHcCCEEEE--------EecCCCcCCcCHHHHHHhcc---cCCeEEEEeC---CCCCcCC----HHHHHHHHHH
Confidence            664443333222111        11111111 27899999887   5688877433   4677776    9999999999


Q ss_pred             cCCEEEEecccc-CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCC-------------
Q 017259          161 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGE-------------  223 (374)
Q Consensus       161 ~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~-------------  223 (374)
                      ||++||+|++|+ |..+.|...  ...+  .++.||+  |.+.+|  ++|+++.+ +++.+.++...             
T Consensus       147 ~gi~vi~D~a~a~g~~~~~~~~--g~~g--~~~~Sf~~~K~l~~g--~GG~v~~~~~~~~~~~~~~~~~G~~~~~~~~~~  220 (379)
T PRK11658        147 YGIPVIEDAAHAVGTYYKGRHI--GARG--TAIFSFHAIKNITCA--EGGLVVTDDDELADRLRSLKFHGLGVDAFDRQT  220 (379)
T ss_pred             cCCeEEEECCCccCCeECCeec--CCCC--CEEEeCCCCCcCccc--CceEEEECCHHHHHHHHHHHHcCCCcchhhhhc
Confidence            999999999998 433333221  1122  3567777  667654  46666654 66665543210             


Q ss_pred             -----------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEec
Q 017259          224 -----------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFD  291 (374)
Q Consensus       224 -----------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~  291 (374)
                                 .+.++..+.+..+.++..++.+  +++.++.+++.+++++.|+.+.......... .......+.+.++
T Consensus       221 ~~~~~~~~~~~~G~n~~~~~l~AAl~~~ql~~l--~~~~~~r~~~a~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (379)
T PRK11658        221 QGRAPQAEVLTPGYKYNLADINAAIALVQLAKL--EALNARRREIAARYLQALADLPFQPLSLPAWPHQHAWHLFIIRVD  298 (379)
T ss_pred             ccCCCcceeeccccccCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCcCCCCCCceeEEEEEEEEC
Confidence                       1223344555555555555544  3457777777888888776542110001011 1112233334443


Q ss_pred             cCCCchhHHHHHHHHHHCCeEeccC-------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          292 KTALPVSAYDICLKMKERGILAKPT-------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~Gi~v~~~-------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ....+.+.+++.+.|.++||.++..                         ....+.+-++...++++++.++++|++++.
T Consensus       299 ~~~~~~~r~~~~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lP~~~~l~~~~~~~i~~~i~~~~~  378 (379)
T PRK11658        299 EERCGISRDALMEALKERGIGTGLHFRAAHTQKYYRERFPTLSLPNTEWNSERICSLPLFPDMTDADVDRVITALQQIAG  378 (379)
T ss_pred             CccccCCHHHHHHHHHHCCCCCcccCcCcccChhhhccCCCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence            2211225889999999999877521                         024455555667899999999999998764

>TIGR02006 IscS cysteine desulfurase IscS

Probab=99.86  E-value=1.3e-19  Score=171.64  Aligned_cols=288  Identities=12%  Similarity=0.144  Sum_probs=183.3

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +..+++++.+++++|.  ++++|++|++++++.++..+.... ..+|     ++|++..+.|+........+... +.  
T Consensus        47 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~~-~~~g-----~~Vi~~~~~h~s~~~~~~~~~~~-g~--  117 (402)
T TIGR02006        47 EAVENARNQVAELIGADSREIVFTSGATESNNLAIKGIAHFY-KSKG-----NHIITSKTEHKAVLDTCRYLERE-GF--  117 (402)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHhh-cCCC-----CEEEECCCccHHHHHHHHHHHhc-CC--
Confidence            3466788889998865  489999999999999988774321 3456     88999888765433332211110 11  


Q ss_pred             cCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                             .+..++.     .|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++++|++|+ 
T Consensus       118 -------~v~~v~~~~~~~~d~~~l~~~l~---~~~~lv~v~~~~n~tG~~~~----~~~I~~l~~~~g~~livD~a~a-  182 (402)
T TIGR02006       118 -------EVTYLPPKSNGLIDLEELKAAIR---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERKVFFHVDAAQS-  182 (402)
T ss_pred             -------EEEEEccCCCCcCCHHHHHHhcC---CCCEEEEEECCCcCceeccc----HHHHHHHHHHcCCEEEEEcchh-
Confidence                   1112211     27889988886   46889999999999999998    9999999999999999999997 


Q ss_pred             CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCC-------CCCCCCHHHHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDV  244 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~aa~~al~~  244 (374)
                      ++..    .++..+..+|++++|  |.++ +. ++|+++.+++....+.+...+       ...+.+.....+..++++.
T Consensus       183 ~g~~----~~~~~~~~~D~~~~s~~K~~g-p~-G~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~al~~al~~  256 (402)
T TIGR02006       183 VGKI----PINVNELKVDLMSISGHKIYG-PK-GIGALYVRRKPRVRLEALIHGGGHERGMRSGTLPTHQIVGMGEAFRI  256 (402)
T ss_pred             cCCc----ccCccccCCCEEEEehhhhcC-CC-ceEEEEEccCCCCCCCceecCCCccCCccCCCccHHHHHHHHHHHHH
Confidence            2211    222334567888888  9664 44 568887776544444432221       1224466666666677877


Q ss_pred             Hhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEE-EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---
Q 017259          245 IRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVK--EVR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---  316 (374)
Q Consensus       245 ~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---  316 (374)
                      +...  ...++.+.+.+++++.|+.    ++++..  ... ..+..+.+.+...    ..+++...|  +++.++.+   
T Consensus       257 ~~~~~~~~~~~~~~l~~~l~~~l~~----~~~v~~~~~~~~~~p~~~~v~f~~~----~~~~~~~~l--~~i~v~~G~~c  326 (402)
T TIGR02006       257 AKEEMAQDTAHVLALRDRLLNGIKS----IEEVYLNGDLEHRVPGNLNVSFNYV----EGESLIMAL--KDLAVSSGSAC  326 (402)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCCccccCCCeEEEEEeCc----CHHHHHHhc--CCEEEechhhc
Confidence            6542  2344555555555555543    222211  111 1112222333322    345565554  35554321   


Q ss_pred             --------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          317 --------------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       317 --------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                                          ..+++|++++..+|++|++++++.|+++++ .+
T Consensus       327 ~~~~~~~~~~l~~lg~~~~~~~~~vR~S~~~~~t~edid~l~~~l~~~~~-~~  378 (402)
T TIGR02006       327 TSASLEPSYVLRALGINDELAHSSIRFTIGRFTTEEEIDYAVKLVKSAID-KL  378 (402)
T ss_pred             CCCCCCccHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH-HH
Confidence                                137899999999999999999999999987 65

This model represents IscS, one of several cysteine desulfurases from a larger protein family designated (misleadingly, in this case) class V aminotransferases. IscS is one of at least 6 enzymes characteristic of the IscSUA-hscAB-fsx system of iron-sulfur cluster assembly. Scoring almost as well as proteobacterial sequences included in the model are mitochondrial cysteine desulfurases, apparently from an analogous system in eukaryotes. The sulfur, taken from cysteine, may be used in other systems as well, such as tRNA base modification and biosynthesis of other cofactors.

>cd00378 SHMT Serine-glycine hydroxymethyltransferase (SHMT)

Probab=99.86  E-value=1e-19  Score=172.62  Aligned_cols=287  Identities=17%  Similarity=0.157  Sum_probs=175.4

Q ss_pred             HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccccccCCCCC
Q 017259           28 ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEAIRGFGPLL  104 (374)
Q Consensus        28 ~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~~~~~~~~~  104 (374)
                      +.+++++|.+.. ++.+||++|+..++..+     .++|     |+|++.+++|.+.......  +..... .....+..
T Consensus        72 ~~~~~~~g~~~~~v~~~sgt~a~~~~l~~l-----~~~G-----d~Vl~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~  140 (402)
T cd00378          72 ERAKKLFGAEYANVQPHSGSQANLAVYFAL-----LEPG-----DTIMGLDLSHGGHLTHGSFTKVSASGK-LFESVPYG  140 (402)
T ss_pred             HHHHHHhCCCceeeecCCcHHHHHHHHHHh-----cCCC-----CEEEEecCccCccccccccccccccce-eEEEecCC
Confidence            356677776643 44457899999999888     5677     9999999998665332211  110000 00000110


Q ss_pred             CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccccc-Ccc
Q 017259          105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGR-MLA  182 (374)
Q Consensus       105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~-~~~  182 (374)
                      .+.... .-|++++++++.+.  ++++++++++.+  |...+    +++|.++|++||+++|+|++|. |+...|. ...
T Consensus       141 ~~~~~~-~id~~~l~~~i~~~--~~~~v~~~~~~~--~~~~~----~~~I~~l~~~~~~~li~D~a~~~g~~~~g~~~~~  211 (402)
T cd00378         141 VDPETG-LIDYDALEKMALEF--KPKLIVAGASAY--PRPID----FKRFREIADEVGAYLLVDMAHVAGLVAGGVFPNP  211 (402)
T ss_pred             cCcccC-CcCHHHHHHHHHhC--CCCEEEecCccc--CCCcC----HHHHHHHHHhcCCEEEEEccchhhhhhcccCCCc
Confidence            100000 11799999988643  567777755433  44555    9999999999999999999974 4432332 111


Q ss_pred             cccCCCCCcEE--EecccccCCccchhhheeCH-HHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhh---hcHHHHHH
Q 017259          183 SDWEEVRPDMV--ILGKALGGGVIPVSAVLADK-EVMLCIQPGEHGSTFGG-NPLASAVAIASLDVIRD---EKLAERSA  255 (374)
Q Consensus       183 ~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~aa~~al~~~~~---~~~~~~~~  255 (374)
                      ..    ..|++  |+||++ +|. ++|++++++ ++.+.+........++. ....++++..++.....   +++.++++
T Consensus       212 ~~----~~dv~~~s~sK~l-~G~-~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~  285 (402)
T cd00378         212 LP----GADVVTTTTHKTL-RGP-RGGLILTRKGELAKKINSAVFPGLQGGPHLHVIAAKAVALKEALEPEFKAYAKQVV  285 (402)
T ss_pred             cc----CCcEEEeccccCC-CCC-CceEEEeccHHHHHHHHHHhCccccCCchHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence            11    23544  788998 567 889988876 78777754322222222 22333333333433322   24566677


Q ss_pred             HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------CCCEEEEec
Q 017259          256 HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVRLTP  325 (374)
Q Consensus       256 ~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~~~lRi~~  325 (374)
                      ++.+++.+.|++.+  + .... .+..+.++|+.+++..  .+...+.+.|.++||.+.+.          ..+.+|+++
T Consensus       286 ~~~~~l~~~L~~~g--~-~~~~-~~~~~~~v~v~~~~~~--~~~~~~~~~l~~~gI~v~~~~~p~~~~~~~~~~~lRi~~  359 (402)
T cd00378         286 ENAKALAEALKERG--F-KVVS-GGTDNHLVLVDLRPKG--ITGKAAEDALEEAGITVNKNTLPWDPSSPFVPSGIRIGT  359 (402)
T ss_pred             HHHHHHHHHHHhCC--C-eEee-cCCCCeEEEEeCCccC--CCHHHHHHHHHHcCcEEcCCcCCCCCCCCCCCCeeEecC
Confidence            77777777776642  1 1111 1234777888776321  14567778888889999631          346899987


Q ss_pred             CCC----CCHHHHHHHHHHHHHHHh
Q 017259          326 PLS----ISSNELQEGSKALHDVLE  346 (374)
Q Consensus       326 ~~~----~~~e~i~~~~~~l~~~~~  346 (374)
                      +..    .+++|++.+++.|+++++
T Consensus       360 ~~~~~~~~~~~di~~~~~~l~~~~~  384 (402)
T cd00378         360 PAMTTRGMGEEEMEEIADFIARALK  384 (402)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHHHh
Confidence            653    479999999999999887

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). SHMT carries out interconversion of serine and glycine; it catalyzes the transfer of hydroxymethyl group of N5, N10-methylene tetrahydrofolate to glycine resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers; the mammalian enzyme forms a homotetramer comprising four pyridoxal phosphate-bound active sites.

>COG2008 GLY1 Threonine aldolase [Amino acid transport and metabolism]

Probab=99.86  E-value=9.5e-20  Score=160.74  Aligned_cols=316  Identities=17%  Similarity=0.162  Sum_probs=200.7

Q ss_pred             hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      .+|++++..-+.  ...++.++....+++++++.++.+.++|+.|||+|+.++|...     .++|     ..||+...+
T Consensus        14 ~~m~eam~~a~~~~~~~YG~D~~~~~~e~~~ae~~g~~a~~Fv~sGT~aN~lal~~~-----~~~~-----~~vi~~~~a   83 (342)
T COG2008          14 PEMREALAAANAVGDDVYGEDPTTNALEQRIAELFGKEAALFVPSGTQANQLALAAH-----CQPG-----ESVICHETA   83 (342)
T ss_pred             HHHHHHHHhccccCCCCCCCCHHHHHHHHHHHHHhCCceEEEecCccHHHHHHHHHh-----cCCC-----CeEEEeccc
Confidence            467777766542  2334667777789999999999999999999999999999998     5666     788877665


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceecc----CCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----FGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                       |-.+.-+-..    .+..+..+.    ..++    .-++++++..+..   +...+..++.++..+..|.++ +.++|+
T Consensus        84 -Hi~~~E~Ga~----~~~~~~~~~----~~~~g~~Gklt~e~v~~~i~~~d~~~~~~~~~~~e~~~te~GtVy-~l~el~  153 (342)
T COG2008          84 -HIYTDECGAP----EFFGGGQKL----PIVPGADGKLTPEDVEAAIRPDDIHHAPTPLAVLENTATEGGTVY-PLDELE  153 (342)
T ss_pred             -cceecccCcH----HHHcCCcee----ccCCCCCCCcCHHHHHHhhcCCCcccCCCceEEEeeccCCCceec-CHHHHH
Confidence             4433222111    111000010    0111    0179999998884   223456666666666777776 899999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhh-heeCHHHHhhcCCC--CCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA-VLADKEVMLCIQPG--EHGSTFG  229 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~-~~~~~~~~~~~~~~--~~~~~~~  229 (374)
                      +|.++|++||++|+.|.+.-.-.-.........+....|+++|+-+-++|+ ++|. ++++.++.+.++-.  ..+.-++
T Consensus       154 ~i~~~~k~~~l~LHmDGAR~~nA~valg~~~~~~~~~~D~v~~~~tK~g~~-~~gAiv~gn~~~~~~a~~~rK~~Ggl~~  232 (342)
T COG2008         154 AISAVCKEHGLPLHMDGARLANALVALGVALKTIKSYVDSVSFCLTKGGGA-PVGAIVFGNRDFAKRARRWRKRAGGLMR  232 (342)
T ss_pred             HHHHHHHHhCCceeechHHHHHHHHHcCCCHHHHHhhCCEEEEecccCCcc-eeeeEEEcCHHHHHHHHHHHHHhcccHh
Confidence            999999999999999987642100011123333444668776653334455 7776 55788887776532  2445555


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      -..+..++...+|+    ++.........+.+..+|.+.....|++....+...+++++.+++..  .+.......+...
T Consensus       233 k~r~laA~~~~~l~----~~~~~~~~~Han~mA~~La~~~~~~~G~~~~~~~~tN~vf~~l~~~~--i~~l~~~~~~~~~  306 (342)
T COG2008         233 KARFLAAQGLYALE----DDVWRLAADHANAMAARLAEGLEAKPGVKLAFPVETNMVFVRLPESA--IEALRLAGALFYR  306 (342)
T ss_pred             hhhHHHHHHHHHHh----ccHHHHHHHHHHHHHHHHHHhhhhcCCceeccCCcccEEEEECChHH--HHHHHhhchhhee
Confidence            56666666666665    33333333444444444444443333444445567888888877532  1233444455566


Q ss_pred             CeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          310 GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       310 Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      |+.+.+.+ ..+|+..+...+++++++++..+++++
T Consensus       307 ~~~~~~~~-~~vRfvts~a~~~edv~~~~~~~~~~~  341 (342)
T COG2008         307 GVLIGAHG-EIVRFVTSWATSEEDVDELVAAIKALL  341 (342)
T ss_pred             eeeccCCC-ceEEEEeeccCCHHHHHHHHHHHHHhh
Confidence            77766654 679999999999999999999988764

>PRK08045 cystathionine gamma-synthase; Provisional

Probab=99.86  E-value=4.7e-20  Score=172.39  Aligned_cols=293  Identities=16%  Similarity=0.145  Sum_probs=191.4

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++++++...+|+++|+++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|++.......+..
T Consensus        44 ~~Y~R~~~pt~~~L~~~lA~l~g~~~~i~~~sg~~Ai~~~l~~l-----~~~G-----D~Vl~~~~~y~~~~~~~~~~~~  113 (386)
T PRK08045         44 HDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVF-----LKPG-----DLLVAPHDCYGGSYRLFDSLAK  113 (386)
T ss_pred             ceeeCCCCccHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHH-----cCCC-----CEEEEcCCCcHHHHHHHHHHHh
Confidence            44567889999999999999998889999999999999999877     5677     9999999999764433222211


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...         ..+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|.
T Consensus       114 ~~g---------i~v~~vd~~d~e~l~~~l~---~~tklV~l~sP~NPtG~v~d----i~~I~~ia~~~g~~vivDeay~  177 (386)
T PRK08045        114 RGC---------YRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREAGAVSVVDNTFL  177 (386)
T ss_pred             hCC---------eEEEEeCCCCHHHHHHhcc---cCCeEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC
Confidence            111         1122222347889988886   57899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .... ..+     .....|++  |++|.++|  +. ..|+++. ++++.+.+...........+++.+..+..+++-+..
T Consensus       178 ~~~~-~~p-----l~~gaDivv~S~tK~l~G~~d~-~~G~vi~~~~~~~~~l~~~~~~~g~~~~p~~~~l~~rgl~tl~~  250 (386)
T PRK08045        178 SPAL-QNP-----LALGADLVLHSCTKYLNGHSDV-VAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP  250 (386)
T ss_pred             cccc-CCc-----hhhCCCEEEeecceeccCCCCc-eeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhccHHH
Confidence            4311 111     12233544  78899984  44 5777766 566766665332333445677887777777765422


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe-
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-  313 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-  313 (374)
                        ..++..++..++.+.|+.-..    .+|+...         ...+.|.++.|+++.+.  .....|++.|.--.+.+ 
T Consensus       251 --R~~~~~~na~~la~~L~~~p~v~~V~yp~l~~~p~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s  326 (386)
T PRK08045        251 --RMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDGDE--QTLRRFLGGLSLFTLAES  326 (386)
T ss_pred             --HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEecCcH--HHHHHHHHhccceeEecc
Confidence              356666666667666664311    1121111         12345778888886421  12345555554222111 


Q ss_pred             ---------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ---------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ---------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               .|.                 .++.+|++.++    |+.+.+++-|.++++
T Consensus       327 ~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  381 (386)
T PRK08045        327 LGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGI----EDGEDLIADLENGFR  381 (386)
T ss_pred             CCCCceeEeCCCCcccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHH
Confidence                     111                 14789999554    445556666666665

>PRK06460 hypothetical protein; Provisional

Probab=99.86  E-value=2.7e-20  Score=173.75  Aligned_cols=293  Identities=14%  Similarity=0.164  Sum_probs=184.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++...++...+|+++++++.|.+..+.++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        37 ~~y~r~~~p~~~~L~~~lA~l~g~~~~v~~~sG~~ai~~~l~al-----~~~G-----d~Vl~~~~~~~~ty~~~~~~~~  106 (376)
T PRK06460         37 YRYSREANPTVLELTKKIVELENAEMGVAFSSGMGAISTTALAL-----LKPG-----NSVLVHRDMFGRSYRFFTDYLK  106 (376)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEecCCcCcHHHHHHHHHH
Confidence            44555778899999999999998887777888899999888877     5677     9999988766432221111110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.++.+.+++.++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+||+|+
T Consensus       107 ~---------~G~~v~~~~~~~~~~l~~~~~---~~tklV~l~sp~NPtG~v~d----~~~I~~la~~~g~~vivDea~~  170 (376)
T PRK06460        107 N---------WGVNVDASNPGSDNIIEKAKS---KRYDVVFVENITNPLLRVVD----ITELSKVCKENGSILIVDATFS  170 (376)
T ss_pred             h---------hCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcC
Confidence            0         012233344444455554433   57899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .. .....     .....|++  |+||.++|  +. ++|++++++++.+.+.........+.++..+..++..++.+.  
T Consensus       171 ~~-~~~~~-----l~~~~divv~S~sK~l~G~~~~-~~G~~~~~~~l~~~l~~~~~~~g~~~~~~~a~~~l~~~~~l~--  241 (376)
T PRK06460        171 TP-INQKP-----LELGADIVVHSASKFLAGHNDV-IAGLAAGYGKLLNVIDQMRRTLGTSLDPHAAYLTLRGIKTLK--  241 (376)
T ss_pred             cc-ccCCh-----hhcCCCEEEeecceeccCCCCc-eEEEEecCHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHH--
Confidence            42 11111     11223544  88899874  35 689999998888877643323333445555444445555443  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHH--C----
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKE--R----  309 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~----  309 (374)
                      ...++++++++++.+.|++...    .+|+...         ...+.|.++.|+++.+.  .....|++.|.-  .    
T Consensus       242 ~r~~~~~~n~~~l~~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~s~~~~~~~--~~~~~~~~~l~~~~~~~s~  319 (376)
T PRK06460        242 IRMDVINRNAEQIAEFLEGHPKVVKVYYPGLKSHVDYEIARRVLKGFGGVLSFEVNGGQ--ESALKVMKSLKLIIPAQTL  319 (376)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCcH--HHHHHHHHhCCcceeccCC
Confidence            3466777778888777775311    1121111         01356888898886431  134455555431  1    


Q ss_pred             C-e---EeccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          310 G-I---LAKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       310 G-i---~v~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      | +   +..|.                 .++.+|+++++    ||.+.+++.|.++++
T Consensus       320 Gg~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  373 (376)
T PRK06460        320 GGVNSVISHPATMSHRTLSLEERKIVGITDSLLRLSVGI----EDVNDLIEDLDRALS  373 (376)
T ss_pred             CCCceEEeCccccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence            1 1   11110                 15789999553    455666777777665

>PRK08133 O-succinylhomoserine sulfhydrylase; Validated

Probab=99.86  E-value=1.1e-20  Score=177.26  Aligned_cols=293  Identities=17%  Similarity=0.192  Sum_probs=185.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++..++++++++++.|.+.+++++||++|+..++..+     .++|     |+|++.++.|.+..........
T Consensus        53 ~~y~r~~~p~~~~le~~la~l~g~~~~v~~ssG~~Ai~~al~al-----~~~G-----d~Vi~~~~~y~~t~~~~~~~~~  122 (390)
T PRK08133         53 NIYSRFTNPTVTMFQERLAALEGAEACVATASGMAAILAVVMAL-----LQAG-----DHVVSSRSLFGSTVSLFEKIFA  122 (390)
T ss_pred             ceeECCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEccCcchhHHHHHHHHHH
Confidence            34456778889999999999999999999999999999999877     4567     9999998887554322111100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               .....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++|+
T Consensus       123 ---------~~G~~v~~vd~~d~~~l~~~i~---~~tklV~ie~p~NptG~v~d----l~~I~~la~~~gi~livD~t~~  186 (390)
T PRK08133        123 ---------RFGIETTFVDLTDLDAWRAAVR---PNTKLFFLETPSNPLTELAD----IAALAEIAHAAGALLVVDNCFC  186 (390)
T ss_pred             ---------HcCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCCcCC----HHHHHHHHHHcCCEEEEECCCc
Confidence                     0113345556668999998887   57999999999999999988    9999999999999999999986


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .... ..+.     ....|++  |+||.+++ |. ++ |+++.++++++.+...........+++.+..++..++.+.  
T Consensus       187 ~~~~-~~pl-----~~g~Divv~S~sK~~~g~g~-~~GG~vv~~~~~~~~~~~~~~~~g~~~~~~~a~~~l~gl~tl~--  257 (390)
T PRK08133        187 TPAL-QQPL-----KLGADVVIHSATKYLDGQGR-VLGGAVVGSKELMEEVFGFLRTAGPTLSPFNAWVFLKGLETLS--  257 (390)
T ss_pred             cccc-CCch-----hhCCcEEEeecceeecCCcc-eEeEEEEcCHHHHHHHHHHHHHhCCCCCHHHHHHHHcccchHH--
Confidence            3211 1111     1223544  77899986 66 66 4566777766555432222233445555555544444332  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec-
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-  314 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-  314 (374)
                      ...++..++...+.+.|++...    .+|+...         ...+.|.++.|++..+.  .....|.+.|.--.+.++ 
T Consensus       258 ~R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~g~g~~~s~~l~~~~--~~~~~f~~~l~l~~~~~sl  335 (390)
T PRK08133        258 LRMEAHSANALALAEWLEAHPGVERVFYPGLPSHPQHELAKRQQKGGGAIVSFEVKGGR--EAAWRVIDATRLISITANL  335 (390)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceEeccC
Confidence            2345555666666666665311    1111111         12345788888886321  124455555432211111 


Q ss_pred             ---------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 ---------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ---------~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               |.                 .++.+|+++++    |+.+.+++-|.++++
T Consensus       336 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (390)
T PRK08133        336 GDTKTTITHPATTTHGRLSPEARAAAGITEGLIRVAVGL----EDVADIKADLARGLA  389 (390)
T ss_pred             CCcceeeecCCCCCcccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHhh
Confidence                     10                 14789999543    455667777777664

>TIGR02080 O_succ_thio_ly O-succinylhomoserine (thiol)-lyase

Probab=99.86  E-value=2.5e-20  Score=174.11  Aligned_cols=293  Identities=17%  Similarity=0.165  Sum_probs=191.6

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++++++...+|++.|+++.+.+++++++||++|+..++..+     .++|     |+|++..++|.+.......+..
T Consensus        43 ~~Y~R~~~p~~~~le~~lA~l~g~~~v~~~~gg~~Ai~~~l~al-----l~~G-----D~Vl~~~p~y~~~~~~~~~~~~  112 (382)
T TIGR02080        43 YDYSRSGNPTRDLLQQALAELEGGAGAVVTNTGMSAIHLVTTAL-----LGPD-----DLLVAPHDCYGGTYRLLNALAK  112 (382)
T ss_pred             CcccCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHH-----cCCC-----CEEEEcCCCcHHHHHHHHHHHh
Confidence            34566889999999999999998899999999999999999888     5667     9999999999764433222221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ...         ..+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|.
T Consensus       113 ~~~---------~~v~~~d~~d~~~l~~ai~---~~tklV~l~~p~NPtG~~~d----l~~I~~la~~~g~~vvvD~a~~  176 (382)
T TIGR02080       113 KGC---------FRVLFVDQGDEQALRAALA---QKPKLVLIETPSNPLLRVVD----IAKICHLAKAVGAVVVVDNTFL  176 (382)
T ss_pred             hcC---------eEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            111         1122223347889998887   47899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .+... .++     ....|++  |++|.++|  +. +.|+++. ++++.+.+...........+++.+..++..++.+..
T Consensus       177 ~~~~~-~pl-----~~gaDivv~S~sK~l~G~~~~-~~G~i~~~~~~~~~~l~~~~~~~g~~~sp~~a~l~lr~l~tl~~  249 (382)
T TIGR02080       177 SPALQ-NPL-----ALGADLVLHSCTKYLNGHSDV-IAGAVIAKDPQVAEELAWWANNLGVTGGAFDSYLTLRGLRTLVA  249 (382)
T ss_pred             ccccC-Cch-----hhCCCEEEeecceeccCCCCc-eeEEEEeCCHHHHHHHHHHHHccCCCCCHHHHHHHHcccchHHH
Confidence            33111 111     1223544  78899874  55 7888766 566766665433333456677777777666665433


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe-
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-  313 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-  313 (374)
                        ..++..++...+.+.|+.-..    .+|+...         ...+.|.++.|+++.+.  ....+|++.|.--.+.+ 
T Consensus       250 --R~~~~~~na~~~a~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s  325 (382)
T TIGR02080       250 --RMRLQQRNAQAIVEYLQTQPLVKKIYYPGLPDHPGHEIAARQQKGFGAMLSFELKGGE--QTVRRFLGGLSLFTLAES  325 (382)
T ss_pred             --HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCCceEEEEecCcH--HHHHHHHHcCCcceEecc
Confidence              255566677777776664211    1121111         11245778888886321  12334555443222111 


Q ss_pred             ---------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ---------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ---------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               .|.                 ..+.+|++.++    |+.+.+++-|.++++
T Consensus       326 ~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGl----E~~~dl~~dl~~al~  380 (382)
T TIGR02080       326 LGGVESLIAHPATMTHAAMGPEARAEAGISDTLLRLSVGL----EDADDLIADLEQGLR  380 (382)
T ss_pred             CCCCcceeECCCccCcccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                     110                 14689999543    456667777777765

This family consists of O-succinylhomoserine (thiol)-lyase, one of three different enzymes designated cystathionine gamma-synthase and involved in methionine biosynthesis. In all three cases, sulfur is added by transsulfuration from Cys to yield cystathionine rather than by a sulfhydrylation step that uses H2S directly and bypasses cystathionine.

>PF01041 DegT_DnrJ_EryC1: DegT/DnrJ/EryC1/StrS aminotransferase family; InterPro: IPR000653 This entry represents a family that are probably all pyridoxal-phosphate-dependent aminotransferase enzymes with a variety of molecular functions

Probab=99.86  E-value=4.3e-20  Score=172.22  Aligned_cols=301  Identities=19%  Similarity=0.234  Sum_probs=193.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++..+.+..   .+...+|++++++++|.++++.++||+.|+.++++++.    .++|     |+|+++..+|.
T Consensus         9 ~~v~~~l~s~~~~~~---g~~~~~fE~~~a~~~g~~~~~~~~sgt~Al~~al~~l~----~~~g-----deVi~p~~t~~   76 (363)
T PF01041_consen    9 DAVLEVLRSGWLSTY---GPYVEEFEKEFAEYFGVKYAVAVSSGTSALHLALRALG----LGPG-----DEVIVPAYTFP   76 (363)
T ss_dssp             HHHHHHHHHTCCSSS---SHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHTT----GGTT-----SEEEEESSS-T
T ss_pred             HHHHHHHHhCCccCC---CHHHHHHHHHHHHHhCCCeEEEeCChhHHHHHHHHhcC----CCcC-----ceEecCCCcch
Confidence            455666666544321   67889999999999999999999999999999999975    6778     99999999987


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +........+..+.        +.++..-.++ |+++++++++   +++++|++.+..+   ...+    +++|.++|++
T Consensus        77 ~~~~ai~~~G~~pv--------~~Di~~~~~~id~~~~~~~i~---~~t~ai~~~h~~G---~~~d----~~~i~~~~~~  138 (363)
T PF01041_consen   77 ATASAILWAGAEPV--------FVDIDPETLNIDPEALEKAIT---PKTKAILVVHLFG---NPAD----MDAIRAIARK  138 (363)
T ss_dssp             HHHHHHHHTT-EEE--------EE-BETTTSSB-HHHHHHHHH---TTEEEEEEE-GGG---B-------HHHHHHHHHH
T ss_pred             HHHHHHHHhccEEE--------EEeccCCcCCcCHHHHHHHhc---cCccEEEEecCCC---Cccc----HHHHHHHHHH
Confidence            66655555544333        3344433333 8999999999   6889999988874   3344    9999999999


Q ss_pred             cCCEEEEecccc-CCcccccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCC---CC--------
Q 017259          161 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQP---GE--------  223 (374)
Q Consensus       161 ~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~---~~--------  223 (374)
                      ||++||.|.+|+ |-.+.|.     ..|..-|+.+||    |.+..|-  +|.++.+ +++.++++.   ..        
T Consensus       139 ~~i~lIeD~a~a~g~~~~g~-----~~G~~gd~~~fSf~~~K~i~~ge--GG~v~~~~~~~~~~~~~~~~~g~~~~~~~~  211 (363)
T PF01041_consen  139 HGIPLIEDAAQAFGARYKGR-----PVGSFGDIAIFSFHPTKIITTGE--GGAVVTNDPELAERARALRNHGRSRDAFRR  211 (363)
T ss_dssp             TT-EEEEE-TTTTT-EETTE-----ETTSSSSEEEEESSTTSSS-SSS---EEEEESTHHHHHHHHHHTBTTEETSECST
T ss_pred             cCCcEEEccccccCceeCCE-----eccCCCCceEecCCCCCCCcCCC--CeeEEecHHHHHHHhhhhhccCcCcccccc
Confidence            999999999998 2211221     222334666555    8887554  4556665 455554432   11        


Q ss_pred             ------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceeeE-EEEeeeEEEEeccCCC
Q 017259          224 ------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKEV-RGRGLFNAVEFDKTAL  295 (374)
Q Consensus       224 ------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~-~~~g~~~~~~~~~~~~  295 (374)
                            .+.++.++.+.++.+++.|+.+  +.+.++.+++.+++.+.|....... +...... ......+.+.+++...
T Consensus       212 ~~~~~~~g~n~rm~~~~AAigl~QL~~L--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~f~i~~~~~~~  289 (363)
T PF01041_consen  212 YRHELPPGYNFRMSELQAAIGLAQLKRL--DEIIARRRENAQRYREALAGIPGIKPPPIPDGAERSSYYRFPIRLPDEAL  289 (363)
T ss_dssp             TEESSSS--B-B-BHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHTTGTTEEEEGCGTTTEEBCESSEEEEETCCGC
T ss_pred             ccccccCCcccccHHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHHHhcCCCccccccccccccccccccccccccccc
Confidence                  2445677888888888888765  3346666677777777666653210 0011111 1334445555554311


Q ss_pred             chhHHHHHHHHHHCCeEeccCC----------------------------CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          296 PVSAYDICLKMKERGILAKPTH----------------------------DTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~----------------------------~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                       .+.+++.+.|.++||.+++..                            ...|.+-.+...++++++++++.|+
T Consensus       290 -~~rd~l~~~L~~~GI~~~~~~~~pl~~~~~~~~~~~~~~~~~P~ae~l~~r~l~LP~~~~lt~edv~~I~~~ir  363 (363)
T PF01041_consen  290 -ADRDELVEALRARGIETRPHYPKPLHRQPVYRSYPYYAPGDLPNAERLSQRLLSLPIHPRLTEEDVDYIAEAIR  363 (363)
T ss_dssp             -STHHHHHHHHHHTTBEEBCSTSSCGGGSGGGTTGEEEETSSSHHHHHHHHHEEEEEHSTTSCHHHHHHHHHHHH
T ss_pred             -chHHHHHHHHHHCCCcccccccCchhhhHHHHhcCccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHhhccC
Confidence             157899999999999986531                            2345555566789999999998874

The family includes StsA P72454 from SWISSPROT, StsC P77952 from SWISSPROT and StsS []. The aminotransferase activity was demonstrated for purified StsC protein as the L-glutamine:scyllo-inosose aminotransferase 2.6.1.50 from EC, which catalyses the first amino transfer in the biosynthesis of the streptidine subunit of streptomycin [].; PDB: 2FNI_A 2FNU_A 2FN6_A 2PO3_A 3UWC_A 1O61_B 1O62_B 1O69_B 1B9I_A 1B9H_A ....

>PRK07504 O-succinylhomoserine sulfhydrylase; Reviewed

Probab=99.86  E-value=1.5e-20  Score=176.73  Aligned_cols=293  Identities=16%  Similarity=0.193  Sum_probs=190.5

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+..|+++...+|+++|+++.|.+..+.++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        57 ~~y~r~~~p~~~~Le~~lA~l~G~~~~~~~~sG~~Ai~~~l~~~-----l~~G-----d~Vl~~~~~y~~~~~~~~~~~~  126 (398)
T PRK07504         57 FIYSRYSNPTVDMFEKRMCALEGAEDARATASGMAAVTAAILCQ-----VKAG-----DHVVAARALFGSCRYVVETLLP  126 (398)
T ss_pred             ceeecCCCchHHHHHHHHHHHhCCCeeeEecCHHHHHHHHHHHH-----hCCC-----CEEEEcCCchhHHHHHHHHHHh
Confidence            34456778899999999999999998888999999998877765     5667     9999999998664433221111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+         ..+..++..|+++++++++   +++++|++++++|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       127 ~~G---------~~v~~vd~~d~e~l~~ai~---~~tklV~lesp~NptG~v~d----l~~I~~la~~~gi~lvvD~a~a  190 (398)
T PRK07504        127 RYG---------IESTLVDGLDLDNWEKAVR---PNTKVFFLESPTNPTLEVID----IAAVAKIANQAGAKLVVDNVFA  190 (398)
T ss_pred             hcC---------eEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCcEecC----HHHHHHHHHHcCCEEEEECCcc
Confidence            101         2233334458899998886   57999999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccchh-hheeCHHHHh-hcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVS-AVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G-~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .... ..+     .....|++  |++|.++| |. ++| +++.+++++. .++..........+++.++.++..++.+..
T Consensus       191 ~~~~-~~~-----~~~gaDivv~S~sK~l~g~g~-~~GG~vv~~~~~i~~~~~~~~~~~g~~~s~~~A~~~l~~L~tl~~  263 (398)
T PRK07504        191 TPLF-QKP-----LELGAHIVVYSATKHIDGQGR-CLGGVVLSDKAWIEEHLQDYFRHTGPSLSPFNAWTLLKGLETLPV  263 (398)
T ss_pred             cccc-CCc-----hhhCCCEEEeeccccccCCcc-ceEEEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccchHHH
Confidence            3211 111     12234555  67799985 77 776 4666666543 233211222335677777777777776533


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe-
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-  313 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-  313 (374)
                        ..++..++..++.+.|++...    .+|+....         ..+.|.++.|+++...  .....|++.|.--.+.+ 
T Consensus       264 --R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~~~~~l~~~~~~~s  339 (398)
T PRK07504        264 --RVRQQTESAAAIADFLAGHPKVARVIYPGRADHPQADIIAKQMTGGSTLVAFELKGGK--EAAFRFLNALKIVRISNN  339 (398)
T ss_pred             --HHHHHHHHHHHHHHHHHcCCCccEEECCCCCCCccHHHHHHhCCCCccEEEEEeCCCH--HHHHHHHHhCCcceeccc
Confidence              356666777777777765321    12221111         1244888999885321  13445555543222211 


Q ss_pred             ---------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ---------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ---------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               .|.                 ..+.+|++.++    |+.+.+++-|+++++
T Consensus       340 lG~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  394 (398)
T PRK07504        340 LGDAKSLITHPATTTHKNLSPEARAELGISEGFLRLSAGL----EDTDDLIEDLAAALK  394 (398)
T ss_pred             CCCCCeeeeCCCCCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence                     110                 14789999553    455666777777766

>TIGR01328 met_gam_lyase methionine gamma-lyase

Probab=99.86  E-value=2.5e-20  Score=174.76  Aligned_cols=293  Identities=14%  Similarity=0.114  Sum_probs=190.3

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.++++.+.+|+++|+++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        51 ~~y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~~l~al-----~~~G-----d~Vi~~~~~y~~t~~~~~~~~~  120 (391)
T TIGR01328        51 YIYSRLGNPTVSNLEGRIAFLEGTEAAVATSSGMGAIAATLLTI-----LKAG-----DHLISDECLYGCTFALLEHALT  120 (391)
T ss_pred             CceeCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEecCcchHHHHHHHHHHh
Confidence            44566888999999999999999999999999999999888877     4567     9999999887543322211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       121 ~---------~G~~~~~vd~~d~e~l~~~i~---~~tklV~le~p~Np~G~v~d----l~~I~~la~~~gi~livD~a~a  184 (391)
T TIGR01328       121 K---------FGIQVDFINMAIPEEVKAHIK---DNTKIVYFETPANPTMKLID----MERVCRDAHSQGVKVIVDNTFA  184 (391)
T ss_pred             c---------CCeEEEEECCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence            1         112344555568899988886   57899999999999999988    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccc-hhhheeCHHHHhhcCCCCC--CCCCCCCHHHHHHHHHHHHHHh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIP-VSAVLADKEVMLCIQPGEH--GSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~-~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      .. ..+.+     .+...|++  |++|.+++ |. + +|++++++++++.++....  ......+++.++.++..++.+.
T Consensus       185 ~~-~~~~~-----~~~g~Divv~S~sK~lgg~g~-~~gG~v~~~~~li~~l~~~~~~~~~g~~l~~~~a~l~l~~L~tl~  257 (391)
T TIGR01328       185 TP-MLTNP-----VALGVDVVVHSATKYIGGHGD-VVAGLICGKAELLQQIRMVGIKDMTGSVISPFDAWLILRGLKTLN  257 (391)
T ss_pred             hh-ccCCc-----hhcCCCEEEccccccccCCCC-ceEEEEEcCHHHHHHHHHHHHHhCCCCCCCcHHHHHHHhCcCcHH
Confidence            32 11221     12334554  77799985 55 4 4667788888777663211  1123446666665555554332


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                        ...++.+++..++.+.|+....    .+|+....         ..+.|.++.|+++.+.  ....+|.+.|.--.+.+
T Consensus       258 --~r~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~~~~~~~~~~~~~~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~  333 (391)
T TIGR01328       258 --IRMKRHSENAMKVAEYLKSHPAVEKVYYPGFEDHPGHDIAAKQMRMGGGMITFELKGGF--AGAKKLLNNLKLIRLAV  333 (391)
T ss_pred             --HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCCceEEEEeCCCH--HHHHHHHHhCCcceEec
Confidence              3456667777777777765321    11211111         1244778888886321  12444555443211111


Q ss_pred             ----------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ----------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ----------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                .|.                 ..+.+|++.++    |+.+.+++-|.++++
T Consensus       334 s~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  389 (391)
T TIGR01328       334 SLGDAETLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGL----EDADDLIADLKQALD  389 (391)
T ss_pred             CCCCCcccCcCCCccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHHHh
Confidence                      010                 14689999443    456777777777776

This model describes a methionine gamma-lyase subset of a family of PLP-dependent trans-sulfuration enzymes. The member from the parasite Trichomonas vaginalis is described as catalyzing alpha gamma- and alpha-beta eliminations and gamma-replacement reactions on methionine, cysteine, and some derivatives. Likewise, the enzyme from Pseudomonas degrades cysteine as well as methionine.

>PRK07050 cystathionine beta-lyase; Provisional

Probab=99.85  E-value=5.6e-20  Score=172.44  Aligned_cols=296  Identities=15%  Similarity=0.070  Sum_probs=183.4

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.++++..++|+++++++.|.+++++++||++|+..++..+     .++|     |+|++.+++|.+..........
T Consensus        57 ~~Y~r~~~pt~~~Le~~lA~l~g~~~~l~~~sgt~Ai~~~l~al-----~~~G-----D~Vl~~~~~y~~~~~~~~~~~~  126 (394)
T PRK07050         57 WRYGLHATPTSLALAQRLAEIEGGRHALLQPSGLAAISLVYFGL-----VKAG-----DDVLIPDNAYGPNRDHGEWLAR  126 (394)
T ss_pred             cccCCCCCHHHHHHHHHHHHHhCCCeEEEeccHHHHHHHHHHHH-----hCCC-----CEEEEecCCcccHHHHHHHHHH
Confidence            44566889999999999999999999999999999999999888     5677     9999999999764432111111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..+.++++++++   +++++++++++.|+++...+    +++|.++|+++|+++|+|++|+
T Consensus       127 ~---------~Gi~v~~vd~~~~~~l~~~i~---~~tklV~le~p~Np~~~~~d----i~~I~~ia~~~gi~livD~a~a  190 (394)
T PRK07050        127 D---------FGITVRFYDPLIGAGIADLIQ---PNTRLIWLEAPGSVTMEVPD----VPAITAAARARGVVTAIDNTYS  190 (394)
T ss_pred             h---------cCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccHhh----HHHHHHHHHHcCCEEEEECCcc
Confidence            0         012233333335677888876   57999999999988886666    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccCCc-cchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~-~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ....      ........|++  |++|.++|+. +++|+++. ++++.+.++........+.+++.+..+...++.+.  
T Consensus       191 ~~~~------~~~l~~GaDi~v~S~tK~~~g~~~~~gG~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~lr~l~tl~--  262 (394)
T PRK07050        191 AGLA------FKPFEHGVDISVQALTKYQSGGSDVLMGATITADAELHAKLKLARMRLGIGVSADDCSLVLRGLPSLQ--  262 (394)
T ss_pred             cccc------cCHHHcCCeEEEEECCceecCCCCeeEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcCCCcHH--
Confidence            2110      11111223544  7889998532 15777665 56777766543222233445554433333333221  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH---h-CCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec-
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ---Q-FPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-  314 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~---~-~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-  314 (374)
                      ...++..++..++.+.|++...   . +|+...         ...+.|.++.|.+..........+|.+.|...++.++ 
T Consensus       263 ~Rl~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~~~~~~~~~~~~l~~~~~~~s~  342 (394)
T PRK07050        263 VRLAAHDRSALEVAEWLKARPEIATVLHPALPDCPGHAFWMRDFTGAGGLFSVVFDERYSPAQVDAFVEALELFAIGWSW  342 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEECCCCCHHHHHHHHHcCCCCeecccc
Confidence            1234444555556665554311   0 111110         1123467777777542112356677777776654332 


Q ss_pred             --------cC------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 --------PT------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 --------~~------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              |.            .++.+|+++++-    +.+.+++-|.++++
T Consensus       343 G~~~sl~~~~~~~~~~~~~~~~~~~~iR~svGlE----~~~dl~~dl~~al~  390 (394)
T PRK07050        343 GGACSLAMPYDVASMRTAKWPHRGTLVRLYIGLE----DEADLIADLEQALE  390 (394)
T ss_pred             CCccceEeeCcccccchhhcCCCCCEEEEEeCcC----CHHHHHHHHHHHHH
Confidence                    21            136799995544    44455555555554

>PRK13034 serine hydroxymethyltransferase; Reviewed

Probab=99.85  E-value=6.4e-19  Score=166.75  Aligned_cols=296  Identities=17%  Similarity=0.150  Sum_probs=184.1

Q ss_pred             CCcHHHHHH----HHhcccCCCeEE-ecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc-ccccccCC
Q 017259           20 NDKFPVFAE----RLTSMFGYDMVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~----~l~~~~~~~~~~-~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~-~~~~~~~~   93 (374)
                      ++...+|++    ++++++|.+.++ +++||+.|+..++.++     .++|     |+|++.+.+|.+... ++......
T Consensus        69 ~~~~~~lE~~~~~~la~l~g~~~alv~~~SG~~A~~~~l~al-----~~~G-----D~Vl~~~~~~~~~~~~g~~~~~~~  138 (416)
T PRK13034         69 CEFVDEVEALAIERAKQLFGCDYANVQPHSGSQANGAVYLAL-----LKPG-----DTILGMSLSHGGHLTHGAKVSLSG  138 (416)
T ss_pred             ChHHHHHHHHHHHHHHHHhCCCceEEecCCcHHHHHHHHHHh-----cCCC-----CEEEEcCccceeeeecCCcceecc
Confidence            567888998    999999999885 4699999999999988     6678     999999988655222 21110000


Q ss_pred             ccccccCCCCCCCcee-ccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLK-VDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~-~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+..    ...++.. ....|++++++.++.+  ++++|+++..  ..|...+    +++|.++|++||++||+|++|+
T Consensus       139 ~~~~~----~~~~~~~~~~~~d~~~le~~l~~~--~~klVi~~~~--~~g~~~d----l~~l~~la~~~g~~livD~Aha  206 (416)
T PRK13034        139 KWYNA----VQYGVDRLTGLIDYDEVEELAKEH--KPKLIIAGFS--AYPRELD----FARFREIADEVGALLMVDMAHI  206 (416)
T ss_pred             ceeee----EEcccccccCCcCHHHHHHHHhhc--CCeEEEECCC--ccccccC----HHHHHHHHHHcCCEEEEeCccc
Confidence            00000    0011110 0113899999988653  4677877432  2355666    9999999999999999999998


Q ss_pred             -CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCH-HHHhhcCCCCCCC-CCCCCHHHHHH-HHHHHHHHh
Q 017259          173 -GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK-EVMLCIQPGEHGS-TFGGNPLASAV-AIASLDVIR  246 (374)
Q Consensus       173 -~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~a-a~~al~~~~  246 (374)
                       |....|.  .....+ ..|++  |++|+++|+.  +|++++++ .+.+.++...... +-...+...++ +.+.++.+.
T Consensus       207 ~G~~~~g~--~~~~~~-~~Di~~~s~~K~l~g~~--GG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~al~~~~~  281 (416)
T PRK13034        207 AGLVAAGE--HPNPFP-HAHVVTTTTHKTLRGPR--GGMILTNDEEIAKKINSAVFPGLQGGPLMHVIAAKAVAFGEALQ  281 (416)
T ss_pred             ccCcccCC--CCCCCC-CceEEEEeCcccCCCCC--CeEEEECcHHHHHHHHhhcCCcccCCccHHHHHHHHHHHHHHhC
Confidence             3222222  111111 25655  6679996543  35566654 4444444321111 11122223333 334444432


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc---------
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP---------  315 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~---------  315 (374)
                      .  .++.++++++.+++++.|++.+..   .... ....+.+.+.+.+..  .....+.+.|.++||.+..         
T Consensus       282 ~~~~~~~~~l~~~a~~l~~~L~~~G~~---~~~~-~~~t~i~~v~~~~~~--~~~~~~~~~L~~~GI~v~~~~~p~~~~~  355 (416)
T PRK13034        282 PEFKTYAKQVIANAQALAEVLKERGYD---LVSG-GTDNHLLLVDLRPKG--LSGKDAEQALERAGITVNKNTVPGDTES  355 (416)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHcCCE---eccC-CCCCcEEEEEcCCCC--CCHHHHHHHHHhCCcEEeccCCCCCCcC
Confidence            2  245788999999999988776322   1111 123555666554321  1456677888889999964         


Q ss_pred             -CCCCEEEEecCC----CCCHHHHHHHHHHHHHHHhccC
Q 017259          316 -THDTIVRLTPPL----SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 -~~~~~lRi~~~~----~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       ..+..+|++++.    .++++|++++++.|++++. ..
T Consensus       356 p~~~~~lR~~~~~~t~~~~~~~di~~l~~~l~~~~~-~~  393 (416)
T PRK13034        356 PFVTSGIRIGTPAGTTRGFGEAEFREIANWILDVLD-DL  393 (416)
T ss_pred             CCCCCeeEeCcHHHHhCCCCHHHHHHHHHHHHHHHh-cC
Confidence             224679999877    6779999999999999998 54

>PRK07503 methionine gamma-lyase; Provisional

Probab=99.85  E-value=1.2e-19  Score=170.93  Aligned_cols=221  Identities=16%  Similarity=0.159  Sum_probs=157.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+|++.|+++.|.+..+.++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        57 ~~y~r~~~p~~~~le~~lA~l~g~~~~i~~~sG~~Al~~~l~~l-----l~~G-----d~Viv~~~~y~~t~~~~~~~~~  126 (403)
T PRK07503         57 HFYSRISNPTLALLEQRMASLEGGEAAVALASGMGAITATLWTL-----LRPG-----DEVIVDQTLYGCTFAFLHHGLG  126 (403)
T ss_pred             ceeeCCCCchHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHH-----cCCC-----CEEEEccCccchHHHHHHHHHh
Confidence            44556778899999999999999888899999999999998876     5677     9999999887432221111100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               .....+..++.+|+++++++++   +++++++++++.|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       127 ---------~~G~~v~~vd~~d~~~l~~~i~---~~tklV~le~p~NPtG~~~d----i~~I~~la~~~gi~lIvD~a~a  190 (403)
T PRK07503        127 ---------EFGVTVRHVDLTDPAALKAAIS---DKTRMVYFETPANPNMRLVD----IAAVAEIAHGAGAKVVVDNTYC  190 (403)
T ss_pred             ---------hCCEEEEEeCCCCHHHHHHhcC---ccCcEEEEeCCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCc
Confidence                     0112344555568999998887   57899999999999999988    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .. ..+.+.     +...|++  |++|.++| |-.++|+++.++++.++++..  ........+++.++.++..++.+. 
T Consensus       191 ~~-~~~~~l-----~~g~Di~v~S~tK~l~g~gd~~gG~v~~~~~l~~~l~~~~~~~~~g~~~s~~~a~l~l~~L~tl~-  263 (403)
T PRK07503        191 TP-YLQRPL-----ELGADLVVHSATKYLGGHGDITAGLVVGGKALADRIRLEGLKDMTGAVMSPFDAFLLMRGLKTLA-  263 (403)
T ss_pred             cc-ccCCch-----hhCCCEEEccccccccCCCceeEEEEEcCHHHHHHHHhhhHHhCcCCCCCHHHHHHHHcCcchHH-
Confidence            32 112221     2334554  77899996 422788888888887777532  222345667777777777666542 


Q ss_pred             hcHHHHHHHHHHHHHHHHHH
Q 017259          248 EKLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~  267 (374)
                       ...++..++..++.+.|+.
T Consensus       264 -~r~~~~~~na~~~a~~L~~  282 (403)
T PRK07503        264 -LRMDRHCASAQAVAEWLAR  282 (403)
T ss_pred             -HHHHHHHHHHHHHHHHHHh
Confidence             2345555677777777765

>PRK07810 O-succinylhomoserine sulfhydrylase; Provisional

Probab=99.85  E-value=4.1e-20  Score=173.75  Aligned_cols=221  Identities=18%  Similarity=0.167  Sum_probs=155.1

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++..++|+++|+++.|.+.+++++||+.|+..++..+     .++|     |+|++....|.+..........
T Consensus        62 ~~Y~r~~~p~~~~le~~lA~l~g~~~al~~~sG~~Ai~~~l~al-----l~~G-----d~Vl~~~~~~~~t~~~~~~~~~  131 (403)
T PRK07810         62 FVYSRYGNPTVSMFEERLRLIEGAEACFATASGMSAVFTALGAL-----LGAG-----DRLVAARSLFGSCFVVCNEILP  131 (403)
T ss_pred             cceeCCCCchHHHHHHHHHHHhCCCcEEEECChHHHHHHHHHHH-----hCCC-----CEEEEccCCcchHHHHHHHHHH
Confidence            33566889999999999999999999999999999999988877     4567     9999887665443222111110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   +++++|+++++.|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       132 ~---------~G~~v~~vd~~d~~~l~~ai~---~~tklV~~esp~Nptg~v~d----l~~I~~la~~~g~~vivD~a~a  195 (403)
T PRK07810        132 R---------WGVETVFVDGEDLSQWEEALS---VPTQAVFFETPSNPMQSLVD----IAAVSELAHAAGAKVVLDNVFA  195 (403)
T ss_pred             H---------cCcEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCC
Confidence            0         113344555568999999887   57899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCHHHHh-hcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ... ...+.     ....|++  |++|.++| |. ++ |+++++++... .++..........+++.++.++..++.+. 
T Consensus       196 ~~~-~~~~~-----~~gaDivv~S~tK~l~g~g~-~~gG~v~~~~~~~~~~l~~~~~~~g~~~s~~~a~l~l~~L~tl~-  267 (403)
T PRK07810        196 TPL-LQRGL-----PLGADVVVYSGTKHIDGQGR-VLGGAILGDREYIDGPVQKLMRHTGPALSAFNAWVLLKGLETLA-  267 (403)
T ss_pred             ccc-cCChh-----hcCCcEEEccCCceecCCcC-ceeEEEEeChHHHHHHHHHHHHHhCCCCCHHHHHHHHhccCcHH-
Confidence            221 11111     1234655  66799986 66 55 66777766443 33322122233567788777777777553 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHH
Q 017259          248 EKLAERSAHLGEELRQHLFKI  268 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~  268 (374)
                       ...++..++..++.+.|+..
T Consensus       268 -~R~~~~~~~a~~~a~~L~~~  287 (403)
T PRK07810        268 -LRVRHSNASALRIAEFLEGH  287 (403)
T ss_pred             -HHHHHHHHHHHHHHHHHhcC
Confidence             34666667777777766653

>PRK07269 cystathionine gamma-synthase; Reviewed

Probab=99.84  E-value=1.1e-19  Score=168.66  Aligned_cols=286  Identities=17%  Similarity=0.131  Sum_probs=184.5

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++...+|+++|+++.+.++++.++||++|+.+++. +     .++|     |+|++..+.|.+..........
T Consensus        46 ~~Y~R~~~p~~~~le~~lA~leg~~~~v~~~sG~aAi~~~l~-~-----l~~G-----D~VI~~~~~yg~~~~~~~~~~~  114 (364)
T PRK07269         46 FDYTRTKNPTRAKLEETLAAIESADYALATSSGMSAIVLAFS-V-----FPVG-----SKVVAVRDLYGGSFRWFNQQEK  114 (364)
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHH-H-----hCCC-----CEEEEecCCcCchHHHHHHHHh
Confidence            445668899999999999999999999999999999998884 4     3567     9999999988654322111110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..           .+...-..|+++++++++   +++++|+++++.|++|.+.+    +++|+++|+++|+++|+|++|.
T Consensus       115 ~~-----------~~~~~~~~d~~~l~~~i~---~~TklV~lesP~NPtg~~~d----i~~I~~la~~~gi~vvvD~t~~  176 (364)
T PRK07269        115 EG-----------RFHFTYANTEEELIAAIE---EDTDIVYIETPTNPLMVEFD----IEKVAKLAHAKGAKVIVDNTFY  176 (364)
T ss_pred             cC-----------cEEEEecCCHHHHHHhcC---cCceEEEEECCCCCCCeeeC----HHHHHHHHHHcCCEEEEECCCc
Confidence            00           011101137899998887   57999999999999998888    9999999999999999999975


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ... ...     ..+...|++  |++|.++| |-+-.|+++. ++++.+.++..........+++.+..++..|+.+.  
T Consensus       177 ~~~-~~~-----pl~~gaDivv~S~tK~l~g~~d~~gG~v~~~~~~l~~~~~~~~~~~G~~~s~~~a~l~~~~L~tL~--  248 (364)
T PRK07269        177 SPI-YQR-----PIELGADIVLHSATKYLSGHNDVLAGVVVTNDLELYEKLFYNLNTTGAVLSPFDSYLLMRGLKTLS--  248 (364)
T ss_pred             ccc-cCC-----chhhCCcEEEecCceeccCCCcccceEEEeCcHHHHHHHHHHHHHhCCCCCHHHHHHHHcCCCcHH--
Confidence            211 111     123445666  55699885 3102455666 45666666532212234567787777777776542  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHC----------CeEeccC-
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER----------GILAKPT-  316 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~----------Gi~v~~~-  316 (374)
                      ...++.+++..++.+.|+.    .|.+... .++.|.++.|.+...   .....|.+.+.-.          .+++.|. 
T Consensus       249 ~r~~~~~~na~~~a~~L~~----~p~v~~v~ypg~gg~~sf~~~~~---~~~~~f~~~l~~~~~~~slG~~~sl~~~p~~  321 (364)
T PRK07269        249 LRMERSTANAQEVVAFLKK----SPAVKEVLYTGKGGMISFKVADE---TRIPHILNSLKVFTFAESLGGVESLITYPTT  321 (364)
T ss_pred             HHHHHHHHHHHHHHHHHHh----CCCccEEeCCCcCcEEEEEECCH---HHHHHHHHhCCcceEccCCCCcCeEeeCCcc
Confidence            2355666666666666654    3322222 256688888887531   1334444443322          2233231 


Q ss_pred             ----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                      .++.+|++.++    |+.+.+++-|.++++
T Consensus       322 ~~~~~~~~~~r~~~Gi~~~liRlsvGl----E~~~dli~dl~~al~  363 (364)
T PRK07269        322 QTHADIPAEVRHSYGLTDDLLRLSIGI----EDARDLIADLKQALE  363 (364)
T ss_pred             cccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHhc
Confidence                            14789999443    456667777776664

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.84  E-value=5.3e-19  Score=178.96  Aligned_cols=300  Identities=13%  Similarity=0.133  Sum_probs=200.4

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChH----HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGA----EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs----~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..+.+.+++++|++++|.+.+.|+++++    ++++.+++.+.    ..+| +..|++|+++. +-|+.+.....+.+  
T Consensus       566 ~~~~~~~~r~~la~i~g~~~v~f~pnaga~ge~a~~~vi~~~~----~~~G-d~~r~~vli~~-~aH~sn~a~a~~~G--  637 (993)
T PLN02414        566 YQEMFEDLGDLLCEITGFDSFSLQPNAGAAGEYAGLMVIRAYH----LSRG-DHHRNVCIIPV-SAHGTNPASAAMCG--  637 (993)
T ss_pred             HHHHHHHHHHHHHHHhCCCeEEEcCCCcHHHHHHHHHHHHHHH----hccC-CCCCCEEEeCC-CcCccCHHHHHHCC--
Confidence            3455778999999999999999999988    66666666663    3335 22234555544 55888776655532  


Q ss_pred             cccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           95 EAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                ..++.++++     |+++|+++++.+.++++++++..+++.+|...+    +++|.++||++|+++++|.
T Consensus       638 ----------~~vv~v~~d~~G~vDle~L~~~i~~~~~~ta~V~vt~pSn~gg~e~~----I~eI~~iah~~Galv~vDg  703 (993)
T PLN02414        638 ----------MKIVVVGTDAKGNINIEELRKAAEAHKDNLAALMVTYPSTHGVYEEG----IDEICDIIHDNGGQVYMDG  703 (993)
T ss_pred             ----------CEEEEeccCCCCCcCHHHHHHHHhccCCCeEEEEEECCCccccccch----HHHHHHHHHHcCCEEEEEe
Confidence                      223333332     899999999866568999999999998998888    9999999999999999999


Q ss_pred             ccc-CCcccccCcccccCCCCCcEEEec--cccc-----CCccchhhheeCHHHHhhcCCCC-----------CC---CC
Q 017259          170 IQS-GLARSGRMLASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGE-----------HG---ST  227 (374)
Q Consensus       170 a~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~-----~G~~~~G~~~~~~~~~~~~~~~~-----------~~---~~  227 (374)
                      ++. +.+     .......+..|++.+|  |+|+     ||- .+|++..++++...+-...           ..   .+
T Consensus       704 Aq~~a~~-----~l~~p~~~GaD~~~~s~HK~f~~P~G~GGP-g~G~l~~~~~L~p~lPg~~v~~~~~~~~r~~~s~iGt  777 (993)
T PLN02414        704 ANMNAQV-----GLTSPGFIGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKKHLAPFLPSHPVVPTGGIPRPEKTQPLGT  777 (993)
T ss_pred             cCHHhcc-----CcCCccccCCCEEEecCCccCCcCcccCCC-CeeeEEEchhhcccCCCCccccCCCcccccCCCCcCC
Confidence            996 221     1112223556888775  8666     344 5777877877654443110           00   11


Q ss_pred             CC----CCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEeccCC--Cc
Q 017259          228 FG----GNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTA--LP  296 (374)
Q Consensus       228 ~~----~~~~~~~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~--~~  296 (374)
                      ..    ++...+.++..-++.+..+++   .++...+.+++.++|++..    +......  ...+=+.+.+...+  .+
T Consensus       778 ~~~a~~g~al~l~~A~~yi~~lG~~Gl~~~a~~a~~nAnYl~~rL~~~~----~~~~~~~~~~~~hEfv~~~~~l~~~~g  853 (993)
T PLN02414        778 ISAAPWGSALILPISYTYIAMMGSEGLTDASKIAILNANYMAKRLEGHY----PVLFRGKNGTCAHEFIIDLRPFKNTAG  853 (993)
T ss_pred             ccchhhhhHHHHHHHHHHHHHHCHhHHHHHHHHHHHHHHHHHHHHHhhC----CccccCCCCCeeeeEEEeccccccccC
Confidence            11    233455566666777666655   5667778888888887632    1221110  11111222232111  02


Q ss_pred             hhHHHHHHHHHHCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          297 VSAYDICLKMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       297 ~~~~~~~~~l~~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .+..++.++|++.||.....   ..+++|++|+...+++|+|+++++|+.+.. +...
T Consensus       854 ~~~~di~krL~d~Gihapt~~~pv~~~lmiepTE~~skeelDrf~~al~~i~~-e~~~  910 (993)
T PLN02414        854 IEPEDVAKRLMDYGFHAPTMSWPVPGTLMIEPTESESKAELDRFCDALISIRE-EIAD  910 (993)
T ss_pred             CCHHHHHHHHHHcCcEEeeeccccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH-HHHH
Confidence            35688999999999876432   378999999999999999999999999998 7665

>PRK05968 hypothetical protein; Provisional

Probab=99.84  E-value=1e-19  Score=170.61  Aligned_cols=287  Identities=15%  Similarity=0.075  Sum_probs=185.3

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+|+++++++.|.+..++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        55 ~~Y~r~~~p~~~~le~~lA~l~g~~~av~~~sG~~Ai~~al~al-----~~~G-----d~Vl~~~~~y~~t~~~~~~~~~  124 (389)
T PRK05968         55 PIYSRGDNPTVRAFEEMLAKLEGAEDARGFASGMAAISSTVLSF-----VEPG-----DRIVAVRHVYPDAFRLFETILK  124 (389)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence            34556778889999999999999888888899999999888776     5677     9999999998764322211110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|++++++++.    ++++++++++.|+.+.+.+    +++|.++|++||+++|+|++|+
T Consensus       125 ~---------~G~~v~~vd~~d~~~l~~~i~----~tklV~ie~pt~~~~~~~d----l~~i~~la~~~gi~vivD~a~a  187 (389)
T PRK05968        125 R---------MGVEVDYVDGRDEEAVAKALP----GAKLLYLESPTSWVFELQD----VAALAALAKRHGVVTMIDNSWA  187 (389)
T ss_pred             H---------cCceEEEeCCCCHHHHHHhcc----cCCEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         112344445568899988773    5788999987777665555    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-C-ccchhhheeCHHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADKEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G-~~~~G~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .... ..+..   .+  .|++  |++|.++| | . ++|+++.++++++.++.... ......+++.++.++.+++.+  
T Consensus       188 ~~~~-~~p~~---~g--~Divv~S~tK~l~g~~~~-~gG~i~~~~~~~~~l~~~~~~~~g~~~~~~~A~~~l~~L~tl--  258 (389)
T PRK05968        188 SPVF-QRPIT---LG--VDLVIHSASKYLGGHSDT-VAGVVAGSKEHIARINAEAYPYLGAKLSPFEAWLLLRGLRTL--  258 (389)
T ss_pred             chhc-cCchh---cC--CcEEEeeccccccCCCCe-EEEEEEECHHHHHHHHHHHHHhCCCCCChHHHHHHHcccCcH--
Confidence            4311 11111   22  3544  77799985 3 4 67788888887776653211 112345666666666666544  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec-
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK-  314 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-  314 (374)
                      ....++..++..++.+.|+..    |.+....            .+.+.++.|.+++.   ....+|++.|...++.++ 
T Consensus       259 ~~r~~~~~~~a~~la~~L~~~----p~v~~v~~p~l~~~~~~~~~g~g~~~sf~~~~~---~~~~~f~~~L~~~~~~~s~  331 (389)
T PRK05968        259 PLRMKAHEASALEIARRLKAH----PVVERVCHPALANHPPAGLSGTSGLFSFIFREG---IDVRAFADALKLFRLGVSW  331 (389)
T ss_pred             HHHHHHHHHHHHHHHHHHHhC----CCccEEECCCCCCChHHhCCCCceEEEEEECCH---HHHHHHHHhCCccEEecCC
Confidence            223455555566666666543    2221111            13466888888642   267788888876654332 


Q ss_pred             --------cC------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 --------PT------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 --------~~------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              |.                  ..+.+|+++++...+    .+++-|+++++
T Consensus       332 G~~~slv~p~~~~~~~~~~~~~~~~~gi~~~liR~SvGlE~~~----dl~~dl~~al~  385 (389)
T PRK05968        332 GGHESLVVPAEVVLQQKAQPNSAARFGVSPRSVRLHVGLEGTE----ALWADLEQALA  385 (389)
T ss_pred             CCCCceeeeCcccccccCCHHHHHhcCCCCCeEEEEeccCCHH----HHHHHHHHHHH
Confidence                    11                  146899997765444    44444445544

>TIGR01324 cysta_beta_ly_B cystathionine beta-lyase, bacterial

Probab=99.84  E-value=1.3e-19  Score=168.72  Aligned_cols=294  Identities=10%  Similarity=0.008  Sum_probs=188.9

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|....|+++|+++.|.+.+++++||++|+..++..+     .++|     |+|++.++.|++..........
T Consensus        42 ~~Y~r~gnPt~~~lE~~lA~l~g~~~~~~~~sG~~Ai~~al~al-----l~~G-----D~Vl~~~~~y~~t~~~~~~~~~  111 (377)
T TIGR01324        42 LTYGRRGTLTHFALQDAMCELEGGAGCYLYPSGLAAVTNSILAF-----VKAG-----DHVLMVDSAYEPTRYFCDIVLK  111 (377)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCCCcEEEECcHHHHHHHHHHHh-----cCCC-----CEEEEcCCCcHHHHHHHHHHHH
Confidence            33445678999999999999999999999999999999999887     5677     9999999999765332111000


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ...++..++..+.++++++++   +++++++++++.|++|.+.+    +++|+++|+++|+++|+|++|+
T Consensus       112 ~---------~gi~v~~~d~~~~e~l~~~i~---~~tklV~lesp~Np~g~~~d----l~~I~~la~~~g~~livD~t~a  175 (377)
T TIGR01324       112 R---------MGVDITYYDPLIGEDIATLIQ---PNTKVLFLEAPSSITFEIQD----IPAIAKAARNPGIVIMIDNTWA  175 (377)
T ss_pred             h---------cCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         011223333334477888776   57999999999999998877    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      . +....+     .....|++  |++|.++|  +. .+|+++.+++..+.+...........++..+......++.+.. 
T Consensus       176 ~-g~~~~p-----l~~gaDivv~S~tK~l~G~~d~-~gG~v~~~~~~~~~l~~~~~~~G~~l~p~~a~~~~rgl~tl~~-  247 (377)
T TIGR01324       176 A-GLLFKP-----LEHGVDISIQAGTKYLVGHSDI-MIGTVVANARTWDQLREHSYLMGQMVDADDAYTTLRGLRTLGV-  247 (377)
T ss_pred             c-ccccCc-----cccCceEEEecCceeccCCCCc-eEEEEEeCHHHHHHHHHHHHHhCCCCCHHHHHHHHhhhhhHHH-
Confidence            2 111121     22345665  56799985  34 5677888877766655322222334456665555555554422 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                       ..++.+++..++.+.|++-..    .+|+...         ...+.|.++.|.++... .....+|.+.|.-.++.++-
T Consensus       248 -R~~~~~~~a~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~g~~~s~~l~~~~-~~~~~~~~~~l~~~~~~~sl  325 (377)
T TIGR01324       248 -RLKQHQESSLAIAKWLSEQPEVARVLHPALPSCPGHEFWKRDFSGSSGLFSFVLQRLT-QKQVHAFLDHLQLFGLGYSW  325 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCcCEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC-HHHHHHHHHhCCcceEeccC
Confidence             256666666667777665321    1121111         12255888888886411 12456677777654433211


Q ss_pred             C-----------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 T-----------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 ~-----------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +                       .++.+|++.++    |+.+.+++-|.++++
T Consensus       326 G~~~sl~~~~~~~~~~~~~~~~~~~~~liR~svGl----E~~~dl~~dl~~al~  375 (377)
T TIGR01324       326 GGYESLALCNQPELGHRPNIKRNLEGPLIRVHIGL----ENVDDLKADLKAGFE  375 (377)
T ss_pred             CCccceeecCCCCCCHHHHHhccCCCCEEEEEeCC----CCHHHHHHHHHHHHh
Confidence            1                       13578998554    345556666666665

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK08776 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=1.3e-19  Score=170.36  Aligned_cols=258  Identities=16%  Similarity=0.134  Sum_probs=172.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+|+++|+++.|.+..++++||++|+..++..+     .++|     |+|++..++|.+.......+..
T Consensus        52 ~~y~R~~~p~~~~Le~~lA~l~g~~~~v~~~sG~~Ai~~~l~al-----l~pG-----D~Vvv~~p~Y~~t~~~~~~~~~  121 (405)
T PRK08776         52 YDYTRSGNPTRDLLGEALAELEGGAGGVITATGMGAINLVLNAL-----LQPG-----DTLVVPHDAYGGSWRLFNALAK  121 (405)
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCCceEEEcCHHHHHHHHHHHH-----hCCC-----CEEEEccCCchHHHHHHHHHHH
Confidence            34566778889999999999998888888999999999988877     5667     9999999999763322211110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..         ...+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|.
T Consensus       122 ~~---------g~~v~~v~~~d~~~l~~~i~---~~tklV~l~~P~NPtG~v~d----l~~I~~la~~~gi~vIvD~a~a  185 (405)
T PRK08776        122 KG---------HFALITADLTDPRSLADALA---QSPKLVLIETPSNPLLRITD----LRFVIEAAHKVGALTVVDNTFL  185 (405)
T ss_pred             hc---------CcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCccCC----HHHHHHHHHHcCCEEEEECCCc
Confidence            00         12233444458899998886   47899999999999999887    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ..... .+  .   ....|++  |.+|.++|  +. .+|+++. ++++.+.+........+..+++.+.++...++.+. 
T Consensus       186 ~~~~~-~p--l---~~gaDivv~S~tK~l~g~~~~-~~G~vv~~~~~l~~~l~~~~~~~g~~~s~~~a~l~~~gl~tl~-  257 (405)
T PRK08776        186 SPALQ-KP--L---EFGADLVLHSTTKYINGHSDV-VGGAVVARDAELHQQLVWWANALGLTGSPFDAFLTLRGLRTLD-  257 (405)
T ss_pred             ccccC-Cc--c---cccCCEEEecCceeecCCCCc-eEEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhCcHH-
Confidence            32111 11  1   2334555  66799985  34 5677665 56676666533233334568888888887777653 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                       ...++..++...+.+.|++...    .+|+...         ...+.|.++.|+++.+.  ....+|++.|.
T Consensus       258 -~r~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~  327 (405)
T PRK08776        258 -ARLRVHQENADAIAALLDGHAAVNQVYYPGLASHPGHALAARQQKGFGAMLSFELEGGE--AAVRAFVDGLR  327 (405)
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCcCHHHHHhcCCCCceEEEEEEcCCH--HHHHHHHHhCC
Confidence             3466777777777777765321    1111111         11355788888886421  12344555443

>PRK14012 cysteine desulfurase; Provisional

Probab=99.84  E-value=1.2e-18  Score=165.03  Aligned_cols=292  Identities=14%  Similarity=0.175  Sum_probs=178.5

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +..+++++.+++++|.+  ++++++|++++++.++..+... +..+|     |+|++.++.|++.......+... +...
T Consensus        49 ~~~~~~r~~ia~~~g~~~~~v~~~~g~t~al~~~l~~l~~~-~~~~g-----d~Vi~~~~~~~s~~~~~~~~~~~-g~~~  121 (404)
T PRK14012         49 EAVDIARNQIADLIGADPREIVFTSGATESDNLAIKGAAHF-YQKKG-----KHIITSKTEHKAVLDTCRQLERE-GFEV  121 (404)
T ss_pred             HHHHHHHHHHHHHcCcCcCeEEEeCCHHHHHHHHHHHHHHh-hcCCC-----CEEEEecCccHHHHHHHHHHHhC-CCEE
Confidence            34667889999988764  5999999999999998877422 13566     89999988875543332222110 1111


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                      .+.+...+..    .|+++++++++   ++++++++..++|++|.+.+    +++|.++|+++|+++|+|++|+ ++.. 
T Consensus       122 ~~v~~~~~g~----~d~~~l~~~i~---~~t~lv~~~~~~n~tG~~~~----~~~I~~la~~~g~~vivD~a~~-~g~~-  188 (404)
T PRK14012        122 TYLDPQSNGI----IDLEKLEAAMR---DDTILVSIMHVNNEIGVIQD----IAAIGEICRERGIIFHVDAAQS-VGKV-  188 (404)
T ss_pred             EEEccCCCCc----CCHHHHHHhcC---CCCEEEEEECcCCCccchhh----HHHHHHHHHHcCCEEEEEcchh-cCCc-
Confidence            0111101100    17899999887   57889999999999999998    9999999999999999999997 2211 


Q ss_pred             cCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC-------CCCCCHHHHHHHHHHHHHHhh--
Q 017259          179 RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS-------TFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~aa~~al~~~~~--  247 (374)
                         ..+.....+|+.++|  |.++ +. ++|+++.+++....+.+...+.       ....+.....+..++++....  
T Consensus       189 ---~~~~~~~~~D~~~~s~~K~~g-p~-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~gt~~~~~~~~l~~al~~~~~~~  263 (404)
T PRK14012        189 ---PIDLSKLKVDLMSFSAHKIYG-PK-GIGALYVRRKPRVRLEAQMHGGGHERGMRSGTLPTHQIVGMGEAARIAKEEM  263 (404)
T ss_pred             ---ccCcccCCCCEEEEehhhccC-CC-ceEEEEEecCCCCCCCceecCCCccCCccCCCcCHHHHHHHHHHHHHHHhhH
Confidence               111223457887666  9665 33 5678777765433443321111       112233334444455554432  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCcee--e-EEEEee--eEEEEeccCCCchhHHHHHHHHHHCCeEeccC------
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVK--E-VRGRGL--FNAVEFDKTALPVSAYDICLKMKERGILAKPT------  316 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~-~~~~g~--~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~------  316 (374)
                      ++..++.+...+++.+.|+.+    +++..  . ....+.  .+++.+.      ..+++...|.  ++.++.+      
T Consensus       264 ~~~~~~~~~l~~~l~~~L~~~----~~i~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~--~~~i~~g~~~~~~  331 (404)
T PRK14012        264 ATENERIRALRDRLWNGIKDI----EEVYLNGDLEQRVPGNLNVSFNYV------EGESLIMALK--DLAVSSGSACTSA  331 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHhcC----CCEEEeCCccccCCCEEEEEEeCc------CHHHHHHhCC--CeEEEchhhhCCC
Confidence            234455555666666655442    22211  1 111111  2333332      2355666664  3333221      


Q ss_pred             -----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          317 -----------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       317 -----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                                       ..+.+|++++..+|++|++++++.|+++++ .+.
T Consensus       332 ~~~~~~~~~~~~~~~~~~~~~iRls~~~~~t~~dvd~~~~~l~~~~~-~~~  381 (404)
T PRK14012        332 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYAIELVRKSIG-KLR  381 (404)
T ss_pred             CCCCCHHHHHcCCChhhcCceEEEEecCCCCHHHHHHHHHHHHHHHH-HHH
Confidence                             137899999999999999999999999988 663

>PRK07811 cystathionine gamma-synthase; Provisional

Probab=99.84  E-value=2.6e-19  Score=167.92  Aligned_cols=294  Identities=16%  Similarity=0.191  Sum_probs=185.0

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.++++...+|+++|+++.|.+..+.++||++|+..++..+     .++|     |+|++..+.|.+..........
T Consensus        53 ~~Y~r~~~p~~~~Le~~lA~~~g~~~~i~~~sG~~Ai~~~l~al-----l~~G-----d~Vl~~~~~y~~t~~~~~~~~~  122 (388)
T PRK07811         53 YEYARTGNPTRTALEEQLAALEGGAYGRAFSSGMAATDCLLRAV-----LRPG-----DHIVIPNDAYGGTFRLIDKVFT  122 (388)
T ss_pred             CcccCCCCccHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchHHHHHHHHhCc
Confidence            34455778889999999999999888888899999999999888     5667     9999999998654322211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               .....+..++..|+++++++++   +++++|++++++|++|...+    +++|.++|+++|++||+|++|+
T Consensus       123 ---------~~gi~~~~~d~~d~e~l~~~i~---~~tklV~ie~p~NPtg~~~d----l~~I~~la~~~gi~lIvD~a~a  186 (388)
T PRK07811        123 ---------RWGVEYTPVDLSDLDAVRAAIT---PRTKLIWVETPTNPLLSITD----IAALAELAHDAGAKVVVDNTFA  186 (388)
T ss_pred             ---------CCCeEEEEeCCCCHHHHHHhcC---cCCeEEEEECCCCCcceecC----HHHHHHHHHHcCCEEEEECCCC
Confidence                     1112334444458999998886   57899999999999998887    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ... ...+.     ....|++  |++|.++| |-.++|+++.+ +++.+.+...........+++.+..+...++.+.  
T Consensus       187 ~~~-~~~p~-----~~gaDivv~S~sK~l~g~~~~~gG~vv~~~~~l~~~~~~~~~~~g~~~s~~~a~l~~~~L~tl~--  258 (388)
T PRK07811        187 SPY-LQQPL-----ALGADVVVHSTTKYIGGHSDVVGGALVTNDEELDEAFAFLQNGAGAVPGPFDAYLTLRGLKTLA--  258 (388)
T ss_pred             ccc-cCCch-----hhCCcEEEecCceeecCCCCcEEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccCcHH--
Confidence            321 11211     2234554  77799986 32156887765 5665655432222223345555544555554332  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe--
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA--  313 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v--  313 (374)
                      ...++..++...+.+.|++...    .+|+...         ...+.|.++.|+++...  .....|.+.|.--.+.+  
T Consensus       259 ~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~g~g~~~s~~~~~~~--~~~~~f~~~l~~~~~~~s~  336 (388)
T PRK07811        259 VRMDRHSENAEAVAEFLAGHPEVSTVLYPGLPSHPGHEVAARQMRGFGGMVSVRLAGGE--EAARDFCARTKVFTLAESL  336 (388)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhcCCCCceEEEEeCCCH--HHHHHHHHhCCcceeeccC
Confidence            2355556677777777765321    1121111         12245788899886321  13444555443211111  


Q ss_pred             --------ccC--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 --------KPT--------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 --------~~~--------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              .|.              .++.+|+++++    |+.+.+++.|.++++
T Consensus       337 G~~~sl~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dl~~dl~~al~  387 (388)
T PRK07811        337 GGVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGI----EDVADLLADLEQALG  387 (388)
T ss_pred             CCCcceEeCCcccCcccCCHhhcCCCCCEEEEEeCC----CCHHHHHHHHHHHhh
Confidence                    110              14689999554    355566666666664

>PRK15407 lipopolysaccharide biosynthesis protein RfbH; Provisional

Probab=99.83  E-value=1.6e-18  Score=164.50  Aligned_cols=294  Identities=15%  Similarity=0.169  Sum_probs=189.0

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcc----cccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG----YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~----~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .+...+|+++|+++++.+++++++||++|+..++.++....    ..++|     |+||+..++|.+........+..+.
T Consensus        62 G~~~~~fe~~lA~~~g~~~~v~~~sGt~al~~aL~al~~~~~~~~~~~pG-----d~VIv~~~t~~a~~~~v~~~G~~pv  136 (438)
T PRK15407         62 GRFNDAFEKKLAEFLGVRYALLVNSGSSANLLAFSALTSPKLGDRALKPG-----DEVITVAAGFPTTVNPIIQNGLVPV  136 (438)
T ss_pred             ChhHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHHhhccccccCCCCC-----CEEEECCCCcHHHHHHHHHcCCEEE
Confidence            45678899999999999999999999999999998774211    14566     9999999999766554443332221


Q ss_pred             ccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-C
Q 017259           96 AIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G  173 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~  173 (374)
                              ..++....++ |++++++++.   +++++++++++.   |...+    +++|.++|++||++||+|++|+ |
T Consensus       137 --------~vdvd~~~~~id~~~le~~i~---~~tkaVi~~~~~---G~p~d----l~~I~~la~~~gi~vIeDaa~a~G  198 (438)
T PRK15407        137 --------FVDVELPTYNIDASLLEAAVS---PKTKAIMIAHTL---GNPFD----LAAVKAFCDKHNLWLIEDNCDALG  198 (438)
T ss_pred             --------EEecCCCcCCcCHHHHHHHcC---cCCeEEEEeCCC---CChhh----HHHHHHHHHHCCCEEEEECccchh
Confidence                    1222211222 7899998886   578999988754   33344    9999999999999999999998 3


Q ss_pred             CcccccCcccccCCCCCcEEEec----ccccCCccchhhheeCH-HHHhhcCCC--------------------------
Q 017259          174 LARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLADK-EVMLCIQPG--------------------------  222 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~~-~~~~~~~~~--------------------------  222 (374)
                      -.+.|..     .|...|+.+||    |.+..|-  +|+++.++ ++.+.++..                          
T Consensus       199 ~~~~g~~-----~G~~gd~~~fSf~~~k~~~~ge--GG~l~t~d~~l~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~  271 (438)
T PRK15407        199 STYDGRM-----TGTFGDIATLSFYPAHHITMGE--GGAVFTNDPLLKKIIESFRDWGRDCWCAPGCDNTCGKRFGWQLG  271 (438)
T ss_pred             hhcCCee-----eeccCceEEEeCCCCCCccccC--ceEEEECCHHHHHHHHHHHHhCcccccccccccccccccccccc
Confidence            2222321     11222555554    6666553  36666653 444322100                          


Q ss_pred             -------------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH--hCCCceeeEEEEeeeEE
Q 017259          223 -------------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVRGRGLFNA  287 (374)
Q Consensus       223 -------------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~g~~~~  287 (374)
                                   ..+.++.++.+.++.+++.|+.+  +++.++.+++.+++.+.|..+..  .+|............+.
T Consensus       272 ~~~~~~~~~~~~~~~G~n~rmsel~AAig~~qL~~l--~~~~~~R~~~a~~y~~~L~~~~~~~~~~~~~~~~~~~~~~~~  349 (438)
T PRK15407        272 ELPFGYDHKYTYSHLGYNLKITDMQAAIGLAQLEKL--PGFIEARKANFAYLKEGLASLEDFLILPEATPNSDPSWFGFP  349 (438)
T ss_pred             cccccccccccccccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCccccCcCCCCCeeEEEEEE
Confidence                         12345567888888888888876  34577778888888888865421  11111112222223334


Q ss_pred             EEeccCCCchhHHHHHHHHHHCCeEeccC-----C-----------------------CCEEEEecCCCCCHHHHHHHHH
Q 017259          288 VEFDKTALPVSAYDICLKMKERGILAKPT-----H-----------------------DTIVRLTPPLSISSNELQEGSK  339 (374)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-----~-----------------------~~~lRi~~~~~~~~e~i~~~~~  339 (374)
                      +.++.. .+.+.+++.+.|.++||.++..     +                       ...+-+-++...+++|++.+++
T Consensus       350 i~~~~~-~~~~Rd~l~~~L~~~GI~~~~~~~~~~~~~p~~~~~~~~~~~~~P~ae~~~~~~l~LP~~~~l~~~~v~~i~~  428 (438)
T PRK15407        350 ITVKED-AGFTRVELVKYLEENKIGTRLLFAGNLTRQPYFKGVKYRVVGELTNTDRIMNDTFWIGVYPGLTEEMLDYVIE  428 (438)
T ss_pred             EEECCc-CCCCHHHHHHHHHHCCCCccccCCCccccChhhhhcCCCCCCCChHHHHHHhCeEEecCCCCCCHHHHHHHHH
Confidence            444332 1225789999999999976421     0                       1224444445679999999999


Q ss_pred             HHHHHHh
Q 017259          340 ALHDVLE  346 (374)
Q Consensus       340 ~l~~~~~  346 (374)
                      +|+++++
T Consensus       429 ~i~~~~~  435 (438)
T PRK15407        429 KIEEFFG  435 (438)
T ss_pred             HHHHHHh
Confidence            9998875

>PRK08861 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=2.7e-19  Score=166.77  Aligned_cols=245  Identities=14%  Similarity=0.110  Sum_probs=163.5

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++....|+++|+++.|.+++++++||++|+..++..+     .++|     |+|++..++|.+..........
T Consensus        45 ~~Y~R~~npt~~~Le~~lA~leg~e~ivvt~gg~~Ai~~~l~al-----l~~G-----d~Il~~~~~y~~~~~~~~~~~~  114 (388)
T PRK08861         45 YDYTRSGNPNRGLLEQTLSELESGKGAVVTNCGTSALNLWVSAL-----LGPD-----DLIVAPHDCYGGTYRLFNTRAN  114 (388)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHH-----cCCC-----CEEEEcCCchHHHHHHHHHHHh
Confidence            44667889999999999999999999999999999999999887     4667     9999999998654322211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+         ..+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|.
T Consensus       115 ~~g---------i~v~~vd~~d~e~l~~~i~---~~tklV~lesP~NPtG~v~d----l~~I~~la~~~gi~vIvDea~~  178 (388)
T PRK08861        115 KGD---------FKVQFVDQSDAAALDAALA---KKPKLILLETPSNPLVRVVD----IAELCQKAKAVGALVAVDNTFL  178 (388)
T ss_pred             cCC---------eEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCcc
Confidence            001         1223333357899988886   57899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .... ..+     .....|++  |.+|.++|  +. .+|+++.+ +++.+.++..........+++.+...+..++-+.-
T Consensus       179 ~~~~-~~p-----l~~GaDivv~S~tK~l~G~~d~-~gG~i~~~~~~~~~~~~~~~~~~G~~~~p~~a~l~~rgl~Tl~l  251 (388)
T PRK08861        179 TPVL-QKP-----LELGADFVIHSTTKYINGHSDV-IGGVLITKTKEHAEELAWWGNCIGATGTPFDSYMTLRGIRTLGA  251 (388)
T ss_pred             cccc-CCC-----cccCCCEEEeecceeccCCCcc-eeEEEEecHHHHHHHHHHHHhccCCCCChHHHHHHHhcCCCHHH
Confidence            3211 111     12345655  66799986  34 56777664 45666554322223334566666655555543322


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEecc
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDK  292 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~  292 (374)
                        ..++..++...+.+.|+.-..    .+|+...         ...+.|.++.|+++.
T Consensus       252 --R~~~~~~~a~~~a~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g~gg~~sf~~~~  307 (388)
T PRK08861        252 --RMRVHEESAQQILAYLQTQSLVGTIYHPSLPEHPGHEIAKKQQSGFGSMLSFEFAG  307 (388)
T ss_pred             --HHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCchHHHHHHhCCCCCceEEEEeCC
Confidence              245556666666666664311    1121111         123467788888863

>PRK08574 cystathionine gamma-synthase; Provisional

Probab=99.83  E-value=1.7e-19  Score=168.69  Aligned_cols=294  Identities=14%  Similarity=0.105  Sum_probs=184.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++...+|++++++++|.+++++++||++|+..++..+     .++|     |+|++..+.|++.......+. 
T Consensus        45 ~~y~r~~np~~~~lE~~lA~l~g~~~~l~~~sG~~Ai~~~l~~l-----l~~G-----D~Vlv~~~~y~~~~~~~~~~~-  113 (385)
T PRK08574         45 LKYSREENPTLRPLEEALAKLEGGVDALAFNSGMAAISTLFFSL-----LKAG-----DRVVLPMEAYGTTLRLLKSLE-  113 (385)
T ss_pred             ceEECCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchhHHHHHHHhh-
Confidence            33456778999999999999999999999999999999999877     5667     999999999876543332221 


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+         ..+..+. .|++++++++++  .++++++++++.|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       114 ~~g---------~~v~~~~-~d~~~l~~~i~~--~~tklV~ie~p~NPtG~v~d----l~~I~~la~~~gi~livD~t~a  177 (385)
T PRK08574        114 KFG---------VKVVLAY-PSTEDIIEAIKE--GRTKLVFIETMTNPTLKVID----VPEVAKAAKELGAILVVDNTFA  177 (385)
T ss_pred             ccC---------cEEEEEC-CCHHHHHHhcCc--cCceEEEEECCCCCCCEecC----HHHHHHHHHHcCCEEEEECCCC
Confidence            000         1122222 268889888873  17899999999999999998    9999999999999999999996


Q ss_pred             -CCcccccCcccccCCCCCcEEEecccccC-Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          173 -GLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       173 -~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                       ++..  .+.   ..+.+.-+.|++|.++| |-.-.|+++. ++++.+.++..........+++.+..++..++.+.  .
T Consensus       178 ~~~~~--~~l---~~GaDivv~S~sK~l~g~~d~~gG~vi~~~~~~~~~~~~~~~~~g~~~~p~~a~l~l~~l~tL~--~  250 (385)
T PRK08574        178 TPLLY--RPL---RHGADFVVHSLTKYIAGHNDVVGGVAVAWSGEFLEELWEWRRRLGTIMQPFEAYLVLRGLKTLE--V  250 (385)
T ss_pred             ccccC--Chh---hhCCcEEEeeCceeecCCCCceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHH--H
Confidence             3211  111   12222223478899985 4302353444 66776665533222334456666666666665543  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----hCCCceee---------E--EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe-
Q 017259          250 LAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------V--RGRGLFNAVEFDKTALPVSAYDICLKMKERGILA-  313 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~--~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v-  313 (374)
                      ..++..++..++.+.|+....    .+|+....         .  .+.|.++.|+++...  ....+|++.|.--.+.+ 
T Consensus       251 R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~~~~~~~~~~~~~~g~g~~~s~~l~~~~--~~~~~~~~~l~l~~~~~s  328 (385)
T PRK08574        251 RFERQCRNAMAIAEFLSEHPKVAEVYYPGLPSDPYHGVAKRLFGKDLYGGVVSFRVKGGR--DAVLKFLRSLKLIKPSPS  328 (385)
T ss_pred             HHHHHHHHHHHHHHHHHcCCCcCEEECCCCCCCchHHHHHHhCCCCCcceEEEEEeCCCH--HHHHHHHHcCCcceEccC
Confidence            355555677777776654321    12221111         1  136788888886321  13444555443211111 


Q ss_pred             ---------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ---------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ---------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               .|.                 ..+.+|++.++    |+.+.+++-|.++++
T Consensus       329 ~G~~~sl~~~~~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~al~  383 (385)
T PRK08574        329 LGGVESLATYPVKSAASPIPEEDRKALGITEDLVRLSVGL----EDVEDLIEDLDQALG  383 (385)
T ss_pred             CCCCcceeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                     110                 14689999553    455666777777665

>PRK00011 glyA serine hydroxymethyltransferase; Reviewed

Probab=99.83  E-value=2.5e-18  Score=163.64  Aligned_cols=285  Identities=15%  Similarity=0.138  Sum_probs=173.4

Q ss_pred             HHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc--cccCCccccccCCCCCC
Q 017259           29 RLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRGFGPLLP  105 (374)
Q Consensus        29 ~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~~~~~~~  105 (374)
                      .+++++|.+.. ++.+||++|+..++..+     .++|     |+|++..++|.+......  ..... .......+...
T Consensus        79 ~la~~~g~~~~~i~~~sgt~al~~~l~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~~~  147 (416)
T PRK00011         79 RAKELFGAEYANVQPHSGSQANAAVYFAL-----LKPG-----DTILGMDLAHGGHLTHGSPVNFSGK-LYNVVSYGVDE  147 (416)
T ss_pred             HHHHHhCCCceeeecCCchHHHHHHHHHh-----cCCC-----CEEEEeccccCCccccccccccccc-eeeEeecCcCc
Confidence            77888877644 44467899999888877     5677     999999999865432211  11110 01100111100


Q ss_pred             CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCcccc
Q 017259          106 GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASD  184 (374)
Q Consensus       106 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~~~~  184 (374)
                        .. -..|+++++++++++  +++++++...  +.|...+    +++|.++|++||+++|+|++|+ |+...|.. . .
T Consensus       148 --~~-~~~d~~~l~~~i~~~--~~k~v~~~~~--~~~~~~~----~~~I~~la~~~~~~livD~a~~~g~~~~g~~-~-~  214 (416)
T PRK00011        148 --ET-GLIDYDEVEKLALEH--KPKLIIAGAS--AYSRPID----FKRFREIADEVGAYLMVDMAHIAGLVAAGVH-P-S  214 (416)
T ss_pred             --cc-CCcCHHHHHHHHHhc--CCCEEEECCC--cCCCccC----HHHHHHHHHHcCCEEEEECcchhcccccCcc-C-C
Confidence              00 012799999998743  5677777532  3355556    9999999999999999999986 33222211 1 1


Q ss_pred             cCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHH-Hhh--hcHHHHHHHH
Q 017259          185 WEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGEHGSTFG-GNPLASAVAIASLDV-IRD--EKLAERSAHL  257 (374)
Q Consensus       185 ~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~~aa~~al~~-~~~--~~~~~~~~~~  257 (374)
                      ..+ ..|++  |++|++ +|. ++|+++++ +++.+.++.......++ +....++++..++.. ..+  +++.++++++
T Consensus       215 ~~~-~~di~~~S~~K~l-~g~-~gg~i~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~~~~~  291 (416)
T PRK00011        215 PVP-HADVVTTTTHKTL-RGP-RGGLILTNDEELAKKINSAVFPGIQGGPLMHVIAAKAVAFKEALEPEFKEYAQQVVKN  291 (416)
T ss_pred             CCC-CCcEEEecCCcCC-CCC-CceEEEeCCHHHHHHHHHHhCccccCCccHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence            111 34544  778998 456 78898885 67777765432222222 223333333333333 221  3467777888


Q ss_pred             HHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc----C------CCCEEEEecC-
Q 017259          258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T------HDTIVRLTPP-  326 (374)
Q Consensus       258 ~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~------~~~~lRi~~~-  326 (374)
                      ++++++.|++++..   +.. ....++++++.+++..  .+..++.+.|.++||.++.    .      .+..+|++.. 
T Consensus       292 ~~~l~~~L~~~g~~---~~~-~~~~~~~~~i~~~~~~--~~~~~~~~~L~~~GI~v~~~~~p~~~~~~~~~~~~Ri~~~~  365 (416)
T PRK00011        292 AKALAEALAERGFR---VVS-GGTDNHLVLVDLRSKG--LTGKEAEAALEEANITVNKNAVPFDPRSPFVTSGIRIGTPA  365 (416)
T ss_pred             HHHHHHHHHhCCCe---eee-cCCCCeEEEEeCcccC--CCHHHHHHHHHHcCcEEccCcCCCCCCCCCCCCceEecCHH
Confidence            88888888764211   111 1123477777764321  1467899999999999973    2      1456899542 


Q ss_pred             ---CCCCHHHHHHHHHHHHHHHh
Q 017259          327 ---LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       327 ---~~~~~e~i~~~~~~l~~~~~  346 (374)
                         ..++++|++++++.|++++.
T Consensus       366 ~~~~~~t~~di~~l~~~l~~~~~  388 (416)
T PRK00011        366 ITTRGFKEAEMKEIAELIADVLD  388 (416)
T ss_pred             HhhcCcCHHHHHHHHHHHHHHHh
Confidence               25679999999999999887

>PRK00451 glycine dehydrogenase subunit 1; Validated

Probab=99.83  E-value=3.7e-18  Score=163.97  Aligned_cols=281  Identities=19%  Similarity=0.168  Sum_probs=170.1

Q ss_pred             HHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCC
Q 017259           26 FAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPL  103 (374)
Q Consensus        26 l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~  103 (374)
                      +.+++++++|.+  ++++++|++++++.++.++.    ..+|     ++|++.++.|..+......+....+......+.
T Consensus       117 ~~~~la~l~g~~~~~v~~~~g~t~~~~~~~~a~~----~~~g-----~~Vlv~~~~~~~~~~~~~~~~~~~G~~~~~v~~  187 (447)
T PRK00451        117 YQTMICELTGMDVANASMYDGATALAEAALMAVR----ITKR-----KKVLVSGAVHPEYREVLKTYLKGQGIEVVEVPY  187 (447)
T ss_pred             HHHHHHHHhCCCcceEEecCcHHHHHHHHHHHHH----hcCC-----CEEEEeCccCHHHHHHHHHHHHhCCcEEEEecC
Confidence            446678877654  78899999999988887764    2455     899999887644433322211000111000111


Q ss_pred             CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE--eccccCCcccccCc
Q 017259          104 LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA--DEIQSGLARSGRML  181 (374)
Q Consensus       104 ~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~--Dea~~~~~~~g~~~  181 (374)
                      ..+     .-|+++++++++   +++++++++++ |++|.+.+    +++|.++|+++|+++++  |.+..+.     ..
T Consensus       188 ~~~-----~~d~~~l~~~i~---~~t~~v~l~~p-n~tG~v~~----l~~I~~~a~~~~~~~iv~~d~~~~g~-----~~  249 (447)
T PRK00451        188 EDG-----VTDLEALEAAVD---DDTAAVVVQYP-NFFGVIED----LEEIAEIAHAGGALFIVGVDPVSLGL-----LK  249 (447)
T ss_pred             CCC-----CCCHHHHHHhcC---CCeEEEEEECC-CCCCeeCC----HHHHHHHHHHCCCEEEEEcChHHhcc-----CC
Confidence            111     127899988886   57899988876 78999988    99999999999999998  5443221     10


Q ss_pred             ccccCCCCCcEEE-----eccccc-CCccchhhheeCHHHHhhcCCC---------------------------CCC-CC
Q 017259          182 ASDWEEVRPDMVI-----LGKALG-GGVIPVSAVLADKEVMLCIQPG---------------------------EHG-ST  227 (374)
Q Consensus       182 ~~~~~~~~~d~~s-----~sK~~~-~G~~~~G~~~~~~~~~~~~~~~---------------------------~~~-~~  227 (374)
                      .  ...+..|+++     +||.+. +|+ ++|+++.++++.+.+.+.                           ... .+
T Consensus       250 ~--~~~~~~D~~~~s~~k~~~~~~~~Gp-g~G~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  326 (447)
T PRK00451        250 P--PGEYGADIVVGEGQPLGIPLSFGGP-YLGFFATRKKLVRQMPGRLVGETVDADGKRGFVLTLQAREQHIRREKATSN  326 (447)
T ss_pred             C--cccCCCCEEEECCCcCCCCCCCCCC-CchHHHhhHHHHhhCCCCEeeeecccCCCeeeEeecccccccccccccccc
Confidence            1  1123456653     456554 678 899998888887774211                           000 11


Q ss_pred             CCCCHHHH-HHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          228 FGGNPLAS-AVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       228 ~~~~~~~~-~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      ++.+...+ .++..+++.+.+   ++..++++++++++.+.|+++.    ++.........++.+.++  .   +..+++
T Consensus       327 ~~~~~~~~~~aaa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~~----g~~~~~~~~~~~~~v~~~--~---~~~~~~  397 (447)
T PRK00451        327 ICTNQALNALAAAIYMSLLGPEGLRELAEQNHQKAHYLAERLAEIG----GVELFDGPFFNEFVVRLP--K---PAEEVN  397 (447)
T ss_pred             ccccHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHhhcC----CEEecCCCeEEEEEEecC--C---CHHHHH
Confidence            12222222 233334443333   2455666667777777776542    111111111111223332  1   468899


Q ss_pred             HHHHHCCeEec----cC---CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          304 LKMKERGILAK----PT---HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       304 ~~l~~~Gi~v~----~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++|.++|+++.    +.   ..+++|++++..+|+++++++++.|++++
T Consensus       398 ~~L~~~gi~~~~~~~~~~~~~~~~~rvs~~~~~t~e~i~~l~~~L~~~~  446 (447)
T PRK00451        398 EALLEKGILGGYDLGRYYPELGNHLLVCVTEKRTKEDIDALVAALGEVL  446 (447)
T ss_pred             HHHHhcCCCCCcccccccCCcCCEEEEecCCCCCHHHHHHHHHHHHHHh
Confidence            99999988742    11   14689999998899999999999998765

>PRK07582 cystathionine gamma-lyase; Validated

Probab=99.83  E-value=1.1e-18  Score=162.46  Aligned_cols=284  Identities=15%  Similarity=0.101  Sum_probs=181.0

Q ss_pred             cCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           14 SSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        14 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .+++|+++...+|+++|+++. .+++++++||++|+..++..+     .++|     |+|++..++|++....+......
T Consensus        44 ~y~ry~~p~~~~Le~~lA~l~-~~~~v~~~sG~~Ai~~~l~al-----l~~G-----d~Vl~~~~~y~~~~~~~~~~l~~  112 (366)
T PRK07582         44 TYGRASNPTWRALEAALGELE-GAEALVFPSGMAAITAVLRAL-----LRPG-----DTVVVPADGYYQVRALAREYLAP  112 (366)
T ss_pred             eeECCCCccHHHHHHHHHHHc-CCCEEEECCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCcHhHHHHHHHHHhc
Confidence            345678999999999999998 567788899999999888776     5677     99999999997764433211100


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                               ....+..++.++..  + .+.   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|..
T Consensus       113 ---------~G~~v~~v~~~~~~--~-~~~---~~t~lV~le~p~NPtg~v~d----i~~I~~~a~~~g~~lvVD~t~~~  173 (366)
T PRK07582        113 ---------LGVTVREAPTAGMA--E-AAL---AGADLVLAETPSNPGLDVCD----LAALAAAAHAAGALLVVDNTTAT  173 (366)
T ss_pred             ---------CeEEEEEECCCChH--H-Hhc---cCceEEEEECCCCCCCCccC----HHHHHHHHHHcCCEEEEECCCCC
Confidence                     01223444443322  1 222   47899999999999998887    99999999999999999999852


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccC--Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .  .+.. ..   ....|++  |++|.++|  |. ++||++. ++++.+.+...........+++.+..+...++.+.  
T Consensus       174 ~--~~~~-p~---~~g~Divv~S~sK~l~G~~g~-~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~a~l~~r~l~tl~--  244 (366)
T PRK07582        174 P--LGQR-PL---ELGADLVVASDTKALTGHSDL-LLGYVAGRDPELMAAVERWRLLAGAIPGPFEAWLAHRSLGTLG--  244 (366)
T ss_pred             c--cccC-ch---hcCCcEEEecccccccCCCCe-eEEEEEcCcHHHHHHHHHHHHHhCCCCCHHHHHHHHhccccHH--
Confidence            1  1111 11   1234554  77899975  66 8899887 46777766543222233456677666665555332  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHh----CCCceeeE---------EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQ----FPNYVKEV---------RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~~~---------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      -..++..++...+.+.|++....    +|+.....         .+.|.++.|++++      ..+..+.+...++....
T Consensus       245 ~R~~~~~~na~~la~~L~~~p~v~~v~yp~l~~~p~~~~~~~~~~~~gg~~s~~~~~------~~~~~~~~~~l~~~~~~  318 (366)
T PRK07582        245 LRFARQCANALAVAELLAGHPAVRGVRYPGLPGDPAHEVAARQMRRFGGLVSFELAD------AAAAERFVAASRLVVAA  318 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHhhCCCCcceEEEEeCC------HHHHHHHHHhCCcceec
Confidence            23466667777777777754311    11111111         1357788888852      34455555555554420


Q ss_pred             -------------------CCCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          316 -------------------THDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       316 -------------------~~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                                         ..++.||+++++...++.++.+.++|+
T Consensus       319 ~s~G~~~sl~~~~~~~~~~~~~~liR~svGlE~~~dli~dl~~al~  364 (366)
T PRK07582        319 TSFGGVHTSADRRARWGDAVPEGFVRLSCGIEDTDDLVADLERALD  364 (366)
T ss_pred             ccCCCccchhhhHHHcCCCCCCCeEEEEeccCCHHHHHHHHHHHHh
Confidence                               114689999777665555555555443

>TIGR03588 PseC UDP-4-keto-6-deoxy-N-acetylglucosamine 4-aminotransferase

Probab=99.83  E-value=2.9e-18  Score=161.24  Aligned_cols=306  Identities=15%  Similarity=0.153  Sum_probs=190.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.+.....    ...+...++++.+++++|.++.++++||++|+..++..+.    .++|     |+|+++.++|+
T Consensus        14 ~~v~~~~~~~~~----~~g~~~~~le~~la~~~g~~~~v~~~sgt~al~~~l~al~----~~~G-----d~Viv~~~~~~   80 (380)
T TIGR03588        14 DAVVEVLKSDFL----TQGPTVPAFEEALAEYVGAKYAVAFNSATSALHIACLALG----VGPG-----DRVWTTPITFV   80 (380)
T ss_pred             HHHHHHHhcCCc----cCChhHHHHHHHHHHHHCCCeEEEEcCHHHHHHHHHHHcC----CCCC-----CEEEeCCcchH
Confidence            345555544432    2356688899999999998988889999999999998773    4667     99999999987


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      +........+..+.+.        ++..-.+ .|++++++.+++.+ ++++++++.+   .+|...+    +++|.++|+
T Consensus        81 ~~~~~~~~~G~~~~~~--------~~~~~~~~~d~~~l~~~i~~~~~~~t~~v~~~~---~~G~~~~----~~~i~~l~~  145 (380)
T TIGR03588        81 ATANCALYCGAKVDFV--------DIDPDTGNIDEDALEKKLAAAKGKLPKAIVPVD---FAGKSVD----MQAIAALAK  145 (380)
T ss_pred             HHHHHHHHcCCEEEEE--------ecCCCcCCcCHHHHHHHhhcccCCCceEEEEeC---CCCccCC----HHHHHHHHH
Confidence            6543333222222111        1100011 27899999887421 3577777544   3576666    999999999


Q ss_pred             hcCCEEEEeccccC-CcccccCcccccCCC--CCcEEEec----ccccCCccchhhhee-CHHHHhhcCCC---------
Q 017259          160 KYNILMIADEIQSG-LARSGRMLASDWEEV--RPDMVILG----KALGGGVIPVSAVLA-DKEVMLCIQPG---------  222 (374)
Q Consensus       160 ~~~i~li~Dea~~~-~~~~g~~~~~~~~~~--~~d~~s~s----K~~~~G~~~~G~~~~-~~~~~~~~~~~---------  222 (374)
                      +||++||+|++|+. ....+..     .+.  ..|+.++|    |.++.|  .+|+++. ++++.+.++..         
T Consensus       146 ~~~~~lI~D~a~a~g~~~~~~~-----~g~~~~~d~~~~S~~~~K~~~~~--~GG~v~~~~~~~~~~~~~~~~~g~~~~~  218 (380)
T TIGR03588       146 KHGLKIIEDASHALGAEYGGKP-----VGNCRYADATVFSFHPVKIITTA--EGGAVTTNDEELAERMRLLRSHGITKDP  218 (380)
T ss_pred             HcCCEEEEECCCcccCccCCEe-----CCCccccceEEEecCCCCccccc--CceEEEECCHHHHHHHHHHHHCCCCCCc
Confidence            99999999999982 2122221     122  23665444    777644  3444554 45555544311         


Q ss_pred             ----------------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeee
Q 017259          223 ----------------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLF  285 (374)
Q Consensus       223 ----------------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~  285 (374)
                                      ..+..+.++.+..+.+++.|+.+  +.+.++.+++.+++.+.|..+....+.... .......+
T Consensus       219 ~~~~~~~~~~~~~~~~~~g~n~~m~~l~aa~g~~qL~~l--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~  296 (380)
T TIGR03588       219 LLFEKQDEGPWYYEQQELGFNYRMTDIQAALGLSQLKKL--DRFVAKRREIAARYDRLLKDLPYFTPLTIPLGSKSAWHL  296 (380)
T ss_pred             ccccccccCcceeeeeccccccCccHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccCCCCCCCCEeEEEE
Confidence                            01223444666666666666654  446777778888888888765311100000 11112233


Q ss_pred             EEEEeccCCCchhHHHHHHHHHHCCeEeccC----C---------------------CCEEEEecCCCCCHHHHHHHHHH
Q 017259          286 NAVEFDKTALPVSAYDICLKMKERGILAKPT----H---------------------DTIVRLTPPLSISSNELQEGSKA  340 (374)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----~---------------------~~~lRi~~~~~~~~e~i~~~~~~  340 (374)
                      +.+.++.. .+.+.+++.+.|.++||.++..    +                     ...+++.++...+++|++.++++
T Consensus       297 ~~i~~~~~-~~~~r~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~a~~~~~~~l~lP~~~~l~~~dv~~i~~~  375 (380)
T TIGR03588       297 YPILLDQE-FGCTRKEVFEALRAAGIGVQVHYIPVHLQPYYRQGFGDGDLPSAENFYLAEISLPLHPALTLEQQQRVVET  375 (380)
T ss_pred             EEEEECCc-CCCCHHHHHHHHHHCCCCcccCCcccccChhhhccCCcCCCcHHHHHHhceEEcCCCCCCCHHHHHHHHHH
Confidence            33334321 1126889999999999987521    0                     25678877788899999999999


Q ss_pred             HHHHH
Q 017259          341 LHDVL  345 (374)
Q Consensus       341 l~~~~  345 (374)
                      |++++
T Consensus       376 l~~~~  380 (380)
T TIGR03588       376 LRKVL  380 (380)
T ss_pred             HHHhC
Confidence            98764

This family of enzymes are aminotransferases of the pfam01041 family involved in the biosynthesis of pseudaminic acid. They convert UDP-4-keto-6-deoxy-N-acetylglucosamine into UDP-4-amino-4,6-dideoxy-N-acetylgalactose. Pseudaminic acid has a role in surface polysaccharide in Pseudomonas as well as in the modification of flagellin in Campylobacter and Helicobacter species.

>PRK06084 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.83  E-value=5.9e-19  Score=166.78  Aligned_cols=293  Identities=17%  Similarity=0.183  Sum_probs=186.6

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+|+++|+++.|.+..++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        50 ~~y~r~~~pt~~~Le~~lA~l~g~~~~l~~ssG~~Ai~~al~al-----~~~G-----d~Vl~~~~~Y~~t~~~~~~~l~  119 (425)
T PRK06084         50 NIYTRIMNPTNDVLEQRVAALEGGVGALAVASGMAAITYAIQTI-----AEAG-----DNIVSVAKLYGGTYNLLAHTLP  119 (425)
T ss_pred             ccccCCCCchHHHHHHHHHHHhCCCceeEehhHHHHHHHHHHHH-----hCCC-----CEEEEeCCCcchHHHHHHHhcc
Confidence            44566778999999999999999889999999999999999988     4567     9999999999764432221100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               .....+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||++||+|++|+
T Consensus       120 ---------~~gi~v~~~d~~d~e~le~ai~---~~tklV~lesp~NPtG~v~d----l~~I~~la~~~~i~vVvD~a~a  183 (425)
T PRK06084        120 ---------RIGIETRFAAHDDIAALEALID---ERTKAVFCESIGNPAGNIID----IQALADAAHRHGVPLIVDNTVA  183 (425)
T ss_pred             ---------cceeEEEEECCCCHHHHHHHhc---cCCcEEEEeCCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence                     0112334455568999999987   47899999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccchhhhee-CHHH--Hh---hc---CC-------------------
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEV--ML---CI---QP-------------------  221 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~-~~~~--~~---~~---~~-------------------  221 (374)
                      .. ...     .......|++  |++|.++| |. ++|+++. +...  .+   ..   ..                   
T Consensus       184 ~~-~~~-----~p~~~gaDivv~S~tK~l~G~g~-~~gG~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~  256 (425)
T PRK06084        184 TP-VLC-----RPFEHGADIVVHSLTKYIGGHGT-SIGGIVVDSGKFPWAEHKERFALLNTPDPSYHGVTYTEAFGPAAF  256 (425)
T ss_pred             cc-ccC-----ChhhcCCCEEEECchhccccccc-ceeEEEEeCCccchhhccccccccccCCcccccchhhhhcchHHH
Confidence            22 111     1122345655  77899986 66 7776554 3221  11   00   00                   


Q ss_pred             -------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------EEE
Q 017259          222 -------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------VRG  281 (374)
Q Consensus       222 -------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~~~  281 (374)
                             ...+.....+++.+..++..++-+.  ...++..++..++.+.|+....    .+|+....         ..+
T Consensus       257 ~~~~~~~~~~~~g~~l~~~~a~l~lrgl~tl~--~R~~~~~~na~~la~~L~~~p~v~~V~yP~l~~~p~~~~~~~~~~g  334 (425)
T PRK06084        257 IGRCRVVPLRNMGAALSPFNAFLILQGLETLA--LRMERHTENALKVARYLQQHPQVAWVKYAGLPDHPEHELARRYMGG  334 (425)
T ss_pred             HHHHHHHHHHhcCCCCCHHHHHHHHcCcCcHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCcccHHHHHHhCCC
Confidence                   0012233446666555555555442  3466666777777777776421    11211110         123


Q ss_pred             -EeeeEEEEeccCCCchhHHHHHHHHHHCCeEe----------ccC-----------------CCCEEEEecCCCCCHHH
Q 017259          282 -RGLFNAVEFDKTALPVSAYDICLKMKERGILA----------KPT-----------------HDTIVRLTPPLSISSNE  333 (374)
Q Consensus       282 -~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v----------~~~-----------------~~~~lRi~~~~~~~~e~  333 (374)
                       .|.++.|+++.+.  ....+|++.|.--.+.+          .|.                 ..+.+|++.++    ||
T Consensus       335 ~~gg~~s~~~~~~~--~~~~~f~~~l~l~~~~~slG~~~slv~~p~~~~h~~~~~~~~~~~gi~~~liR~svGl----Ed  408 (425)
T PRK06084        335 KPASILSFGIKGGQ--AAGARFIDALKLVVRLVNIGDAKSLACHPASTTHRQLNDEELEKAGVSRDMVRLSIGI----EH  408 (425)
T ss_pred             CcceEEEEEecCCH--HHHHHHHHhCCcceeccccCCCceeeeCCCcCCcccCCHHHHHhcCCCCCeEEEEecc----CC
Confidence             4778888886431  12344555543222111          110                 14789999443    45


Q ss_pred             HHHHHHHHHHHHh
Q 017259          334 LQEGSKALHDVLE  346 (374)
Q Consensus       334 i~~~~~~l~~~~~  346 (374)
                      .+.+++-|.++++
T Consensus       409 ~~dLi~dl~~Al~  421 (425)
T PRK06084        409 IDDIIADLAQALD  421 (425)
T ss_pred             HHHHHHHHHHHHH
Confidence            6667777777776

>TIGR01326 OAH_OAS_sulfhy OAH/OAS sulfhydrylase

Probab=99.82  E-value=3.4e-19  Score=168.74  Aligned_cols=168  Identities=18%  Similarity=0.161  Sum_probs=127.4

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.++...+|+++|+++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        49 ~~ysr~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~~l-----~~~G-----d~Vl~~~~~y~~t~~~~~~~~~  118 (418)
T TIGR01326        49 NIYSRLMNPTTDVLEQRIAALEGGVAALAVASGQAAITYAILNL-----AQAG-----DNIVSSSYLYGGTYNLFKHTLK  118 (418)
T ss_pred             ceeECCCChhHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHH-----hCCC-----CEEEEECCCcHHHHHHHHHHHH
Confidence            33566788999999999999999999999999999999999887     4567     9999999998664322211110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       119 ~---------~G~~v~~v~~~d~~~l~~~l~---~~t~~V~le~p~NPtg~v~d----l~~I~~la~~~~i~livD~t~~  182 (418)
T TIGR01326       119 R---------LGIEVRFVDPDDPEEFEKAID---ENTKAVFAETIGNPAINVPD----IEAIAEVAHAHGVPLIVDNTFA  182 (418)
T ss_pred             H---------cCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         112244445568999999887   57899999999999999888    9999999999999999999996


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCH
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK  213 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~  213 (374)
                      .. .     ........+|++  |++|.++| |+ ++|+++.+.
T Consensus       183 ~~-~-----~~~~l~~g~Divv~S~sK~l~g~G~-~lGg~v~~~  219 (418)
T TIGR01326       183 TP-Y-----LCRPIDHGADIVVHSATKYIGGHGT-AIGGVIVDG  219 (418)
T ss_pred             hh-h-----cCCchhcCCeEEEECccccccCCcc-ceEEEEEec
Confidence            21 1     111122345655  78899997 88 999977754

This model describes a distinct clade of the Cys/Met metabolism pyridoxal phosphate-dependent enzyme superfamily. Members include examples of OAH/OAS sulfhydrylase, an enzyme with activity both as O-acetylhomoserine (OAH) sulfhydrylase (EC 2.5.1.49) and O-acetylserine (OAS) sulphydrylase (EC 2.5.1.47). An alternate name for OAH sulfhydrylase is homocysteine synthase. This model is designated subfamily because it may or may not have both activities.

>PRK09028 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=6.5e-19  Score=164.08  Aligned_cols=257  Identities=11%  Similarity=0.053  Sum_probs=165.2

Q ss_pred             CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      +++..++....|++.++++.+.+.+++++||++|+..++..+     .++|     |+|++.++.|.+..........  
T Consensus        55 Y~r~~npt~~~Le~~iA~le~~~~~~~~~sG~~Ai~~~l~al-----l~~G-----D~Vvv~~~~Y~~t~~l~~~~l~--  122 (394)
T PRK09028         55 YGRRGTPTHFAFQAAIVELEGGAGTALYPSGAAAISNALLSF-----LKAG-----DHLLMVDSCYEPTRDLCDKILK--  122 (394)
T ss_pred             ecCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEECCCcHHHHHHHHHhhh--
Confidence            445557788899999999988888999999999999999877     5667     9999999998665432211110  


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                             .....+..++..+.+.++++++   +++++++++++.|++|.+.+    +++|+++|++||+++++|++|+..
T Consensus       123 -------~~Gi~v~~v~~~~~e~l~~~l~---~~TklV~lespsNPtg~v~d----l~~I~~la~~~g~~lvvD~t~a~p  188 (394)
T PRK09028        123 -------GFGIETTYYDPMIGEGIRELIR---PNTKVLFLESPGSITMEVQD----VPTLSRIAHEHDIVVMLDNTWASP  188 (394)
T ss_pred             -------hcceEEEEECCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHcCCEEEEECCcccc
Confidence                   0112233344446678888876   57999999999999998877    999999999999999999999732


Q ss_pred             cccccCcccccCCCCCcEE--EecccccC--CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL  250 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~  250 (374)
                            .......+.+|++  |.+|.++|  .. -.|+++.++++.+.+...........+++.+..+...++-+.-  .
T Consensus       189 ------~~~~Pl~~GaDivv~S~tK~l~Gh~d~-~~G~~~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~l--R  259 (394)
T PRK09028        189 ------INSRPFEMGVDISIQAATKYIVGHSDV-MLGTATANEKHWDQLREHSYLMGQCTSPDDVYLAMRGLRTLGV--R  259 (394)
T ss_pred             ------ccCCccccCceEEEEeCCeEecCCCCE-EEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcHHH--H
Confidence                  1122223456765  66799986  34 5566666666655554221222234566666666655554322  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          251 AERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .++..++...+.+.|++-..    .+|+...         ...+.|.++.|++++.. ......|.+.|.
T Consensus       260 ~~~~~~na~~la~~L~~~p~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~-~~~~~~f~~~l~  328 (394)
T PRK09028        260 LAQHEKNALKVANWLATRPEVDHVRHPAFETCPGHEFFKRDFSGSNGLFSFVLKQGD-PKAVTALVEGMQ  328 (394)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhccCCCceEEEEECCCC-HHHHHHHHHhCC
Confidence            45555666666666655321    1121111         12245788888886321 112344555543

>KOG0633 consensus Histidinol phosphate aminotransferase [Amino acid transport and metabolism]

Probab=99.81  E-value=1.9e-18  Score=144.41  Aligned_cols=272  Identities=16%  Similarity=0.188  Sum_probs=176.3

Q ss_pred             CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCC--
Q 017259           36 YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG--  113 (374)
Q Consensus        36 ~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  113 (374)
                      .++++..-|+.|.+++.++...         .||.++|+..+|+|.-++..+. .-+            ..++.+|.+  
T Consensus        86 ~dnic~GvGsDE~ID~iiR~~c---------~PGkeKIl~cPPtysMY~v~A~-iNd------------~eVvkvpl~pd  143 (375)
T KOG0633|consen   86 SDNICVGVGSDELIDLIIRCVC---------DPGKEKILDCPPTYSMYVVDAA-IND------------AEVVKVPLNPD  143 (375)
T ss_pred             ccceEEecCcHHHHHHHHhhee---------cCCccceeecCCcceeEEEEee-cCC------------ceEEEecCCCC
Confidence            4689999999999999999884         3345999999999965543322 111            223333332  


Q ss_pred             ---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCC
Q 017259          114 ---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP  190 (374)
Q Consensus       114 ---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~  190 (374)
                         +.+++.+.++.. ++++.+++.++.|++|.+. +.+.+++|.+.-  -+.++++||+|.+|.  |......+...+|
T Consensus       144 F~lnvdai~evl~~d-s~iK~~F~tSPgNPtg~~i-k~~di~KiLe~p--~nglVVvDEAYidFs--g~~S~~~lV~kYp  217 (375)
T KOG0633|consen  144 FSLNVDAIAEVLELD-SKIKCIFLTSPGNPTGSII-KEDDILKILEMP--DNGLVVVDEAYIDFS--GVESRMKLVKKYP  217 (375)
T ss_pred             ccccHHHHHHHHhcc-ccceEEEEcCCCCCCcccc-cHHHHHHHHhCC--CCcEEEEeeeeEeec--cccccchHhHhCC
Confidence               788888877642 5899999999999999998 555555554432  379999999999884  3222333344577


Q ss_pred             cEE---Eeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHH
Q 017259          191 DMV---ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF  266 (374)
Q Consensus       191 d~~---s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~  266 (374)
                      +++   ++||++| +|+ |+|+.+.+.++.+-+..  ...+|..+..+..+|++++..-. .+..+..++...+-+++|-
T Consensus       218 NLivlqTlSKsfGLAGi-RvG~~~~~~~ia~iln~--~KaPYNiS~~~s~~AL~Als~~n-~kkme~~rdaiv~er~RL~  293 (375)
T KOG0633|consen  218 NLIVLQTLSKSFGLAGI-RVGYGAFPLSIAEILNR--AKAPYNISVAGSVAALAALSDSN-GKKMEDVRDAIVRERERLF  293 (375)
T ss_pred             ceeehhhhhhhcCccee-EeecccccHHHHHHHHh--ccCCccccchhHHHHHHhcCccc-chHHHHHHHHHHHHHHHHH
Confidence            766   8999999 799 99999999888777764  33456666667667777665211 1222233333333333333


Q ss_pred             HHHHhCCCceee--EEEEeeeEEEEeccCCCchhHHHHHHH-HHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHH
Q 017259          267 KIQQQFPNYVKE--VRGRGLFNAVEFDKTALPVSAYDICLK-MKERGILAKPT-----HDTIVRLTPPLSISSNELQEGS  338 (374)
Q Consensus       267 ~~~~~~~~~~~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~-l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~  338 (374)
                      .....+| +..+  .....+|+.+++.+...+ .+..+..+ +...||+++..     ..+++||+   ..++|+..-++
T Consensus       294 keLt~v~-~~~~~~gg~daNFiLi~v~~~~n~-~akkly~q~at~~gVvVRfrgse~~c~G~lRit---vGt~EentvL~  368 (375)
T KOG0633|consen  294 KELTEVP-FLNDYPGGSDANFILIEVTGGDNG-MAKKLYKQDATKMGVVVRFRGSEEGCKGYLRIT---VGTPEENTVLM  368 (375)
T ss_pred             HHhhcCc-cccCCCCcccccEEEEEEcCCCcH-HHHHHHHHHHHhcceEEEEcCCccccceeEEEE---cCCcccchHHH
Confidence            3332222 2221  223467777777543211 23444444 45679999864     36899998   66888888899


Q ss_pred             HHHHHH
Q 017259          339 KALHDV  344 (374)
Q Consensus       339 ~~l~~~  344 (374)
                      +.|+..
T Consensus       369 k~~K~~  374 (375)
T KOG0633|consen  369 KCLKQF  374 (375)
T ss_pred             HHHHhh
Confidence            888765

>PRK12566 glycine dehydrogenase; Provisional

Probab=99.81  E-value=8.7e-18  Score=167.16  Aligned_cols=310  Identities=14%  Similarity=0.149  Sum_probs=196.5

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecC-ChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMN-TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~-~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .+...++++.+++++|.+.+-+.+ +|+++..+++++++.|+ ..+| +.+|++|++.... |+.+.......+      
T Consensus       542 lq~i~elq~~l~eLtGmd~~Sl~p~sGA~gE~A~Lmair~yh-~~~G-e~~r~~vLIp~sa-HgtNpasa~~~G------  612 (954)
T PRK12566        542 RAMIDELEAWLCAITGFDAICMQPNSGAQGEYAGLLAIRRYH-RSRG-QSQRDICLIPSSA-HGTNPASAQMAG------  612 (954)
T ss_pred             HHHHHHHHHHHHHHHCCCeEeecCCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEecccc-cccCHHHHHHCC------
Confidence            445668999999999999875554 78888889999998876 6677 4556777776655 666554433222      


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-  172 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-  172 (374)
                            ..++.++++     |+++|++++++++++++++++..+++.++...+    +++|+++||++|.++++|.++. 
T Consensus       613 ------ieVv~Vp~D~~G~iDle~L~a~I~~~~~~laaVmiT~Pnt~Gv~e~~----V~eI~~iah~~Galv~vDgA~~~  682 (954)
T PRK12566        613 ------MRVVIVECDPDGNVDLDDLKAKAAAAGDRLSCLMITYPSTHGVYEEG----IREICEVVHQHGGQVYMDGANLN  682 (954)
T ss_pred             ------CEEEEeccCCCCCcCHHHHHHHhhccCCCEEEEEEEecCcCceecch----HHHHHHHHHHcCCEEEEEeeChh
Confidence                  223333332     899999999866678888888776655554444    9999999999999999999986 


Q ss_pred             CCcccccCcccc-cCCCCCcEEEec--ccccC-----CccchhhheeCHHHHhhcCCCC-------------CCCCCCCC
Q 017259          173 GLARSGRMLASD-WEEVRPDMVILG--KALGG-----GVIPVSAVLADKEVMLCIQPGE-------------HGSTFGGN  231 (374)
Q Consensus       173 ~~~~~g~~~~~~-~~~~~~d~~s~s--K~~~~-----G~~~~G~~~~~~~~~~~~~~~~-------------~~~~~~~~  231 (374)
                      +..      ... ...+..|++.++  |++++     |. .+|.+...+++...+....             ......++
T Consensus       683 a~~------~l~~Pg~~GADi~~~s~HKtf~~P~G~GGP-~vG~iav~~~L~pfLp~~P~~d~~G~~~r~ga~S~~~~gs  755 (954)
T PRK12566        683 AQV------GLARPADIGADVSHMNLHKTFCIPHGGGGP-GMGPIGVRAHLAPFVANHPVVPVEGPDPNNGAVSAAPWGS  755 (954)
T ss_pred             hcc------CCCChhhcCCCEEEecCCcccCcCccCCCC-ccchhhhhhhhhhhccCCCCcCCCCCCCCCCceeecccch
Confidence            221      111 123567888776  87762     33 4455555554444433210             11112334


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEeccCC--CchhHHHHHH
Q 017259          232 PLASAVAIASLDVIRDEKLAERS---AHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTA--LPVSAYDICL  304 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~--~~~~~~~~~~  304 (374)
                      ...+.+++.-++.+..+ +.+..   ..+.+++.++|.+.   + +......  ...+=+.+.+...+  .+.+..++.+
T Consensus       756 a~~l~~A~~Yi~~lG~e-Lk~aa~~ailnAnYla~rL~~~---~-~v~~~~~~~~~~hEfii~~~~l~~~~g~~~~dvak  830 (954)
T PRK12566        756 ASILPISWMYIAMMGPQ-LADASEVAILSANYLANQLGGA---F-PVLYRGRNERVAHECILDLRPLKAQTGISEEDVAK  830 (954)
T ss_pred             HHHHHHHHHHHHHHCHH-HHHHHHHHHHHHHHHHHHhHhh---C-CCCcCCCCCCeeeEEEEEccccccccCCCHHHHHH
Confidence            34445555556666555 32222   34677888888663   2 2222110  11111222222111  1236788999


Q ss_pred             HHHHCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC--CCCCCCC
Q 017259          305 KMKERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK--PKPADAP  361 (374)
Q Consensus       305 ~l~~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~--~~~~~~~  361 (374)
                      +|++.||.....   ..+++|++|+...+++|+|+++++|+.+.+ +...++.  ++..|||
T Consensus       831 RL~d~Gihapt~~fPv~~~LmIepTE~eskeEIDrf~eAL~~I~~-e~~~v~~g~~~~~~n~  891 (954)
T PRK12566        831 RLMDYGFHAPTMSFPVPGTLMVEPTESESKAELDRFVEAMLSIRA-EIGKVQEGNWPAEDNP  891 (954)
T ss_pred             HHHHCCcEEeEEeeccCCEEEEEeeeeCCHHHHHHHHHHHHHHHH-HHHHHHcCCCCcccCc
Confidence            999988876432   378999999999999999999999999998 7665544  5555553

>PRK08064 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=1.8e-18  Score=162.25  Aligned_cols=289  Identities=13%  Similarity=0.102  Sum_probs=180.1

Q ss_pred             cCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           14 SSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        14 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++...++...+++++|+++.|.+..+.++||+.|+..++. +     .++|     |+|++.++.|++...........
T Consensus        47 ~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~ai~~~l~-~-----l~~G-----d~Vlv~~~~y~~~~~~~~~~~~~  115 (390)
T PRK08064         47 DYSRSGNPTREALEDIIAELEGGTKGFAFASGMAAISTAFL-L-----LSKG-----DHVLISEDVYGGTYRMITEVLSR  115 (390)
T ss_pred             cccCCCChhHHHHHHHHHHHhCCCCeEEECCHHHHHHHHHH-H-----hCCC-----CEEEEccCccchHHHHHHHHHHH
Confidence            34456688899999999999988888888999999988875 3     4567     99999999987654332211100


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                               ....+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|+++|+++|+|++|+.
T Consensus       116 ---------~G~~v~~v~~~d~~~l~~~l~---~~tklV~l~~p~NptG~~~d----l~~I~~la~~~g~~vvvD~a~~~  179 (390)
T PRK08064        116 ---------FGIEHTFVDMTNLEEVAQNIK---PNTKLFYVETPSNPLLKVTD----IRGVVKLAKAIGCLTFVDNTFLT  179 (390)
T ss_pred             ---------cCCEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCcEecc----HHHHHHHHHHcCCEEEEECCCCc
Confidence                     113344555568888988886   57899999999999999998    99999999999999999999874


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccC--Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +.. ..+     .....|++  |++|.++|  |. -.|+++. ++++.+.++..........++..+..+...++.+  .
T Consensus       180 ~~~-~~~-----~~~g~Divv~S~tK~~~G~~~~-laG~~v~~~~~~~~~l~~~~~~~g~~~~~~~a~l~~~gl~tl--~  250 (390)
T PRK08064        180 PLL-QKP-----LDLGADVVLHSATKFLAGHSDV-LAGLAVVKDEELAQKLYFLQNSFGAVLGVQDCWLVLRGLKTL--H  250 (390)
T ss_pred             ccc-cCc-----hhhCCcEEEeecceeccCCccc-eeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHcccCcH--H
Confidence            311 111     12234555  67799875  32 3455555 4677777664333233333444433333333222  1


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE---
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL---  312 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~---  312 (374)
                      ...++..++..++.+.|+....    .+|+...         ...+.|.++.|++++      ..++.+.+...+++   
T Consensus       251 ~R~~~~~~~a~~la~~L~~~~~v~~v~yp~l~~~p~~~~~~~~~~g~gg~~sf~~~~------~~~~~~f~~~l~l~~~~  324 (390)
T PRK08064        251 VRLEHSSETANKIALYLQEHPKVQNVYYPGLQTHLGFDIQQSQATSAGAVLSFTLQS------EEAVRQFVSHVKLPVFA  324 (390)
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCcceEECCCCCCCccHHHHHHhCCCcceEEEEEECC------HHHHHHHHHhCCcceEc
Confidence            2244555566666666654321    1111110         123567788888853      22344444444541   


Q ss_pred             eccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          313 AKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       313 v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ++-+                           .++.+|+++++...++.++.+.++|+++
T Consensus       325 ~s~G~~~sl~~~~~~~~h~~~~~~~~~~~gi~~~liR~SvGle~~~dli~dl~~Al~~~  383 (390)
T PRK08064        325 VSLGAVESILSYPAKMSHAAMPKEERDERGITDGLLRLSVGLENVDDLIADFEQALSYV  383 (390)
T ss_pred             ccCCCCcceeECCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHHHHHHHHHHHHhc
Confidence            1110                           1478999988776666666666666553

>TIGR01329 cysta_beta_ly_E cystathionine beta-lyase, eukaryotic

Probab=99.81  E-value=1.3e-18  Score=162.67  Aligned_cols=289  Identities=13%  Similarity=0.129  Sum_probs=183.6

Q ss_pred             CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++...++..++|+++++++.|.+.+++++||+.|+..++. +     .++|     |+|++.++.|.+........... 
T Consensus        41 Y~r~~~p~~~~le~~la~l~g~~~~l~~~sG~~al~~~l~-l-----l~~G-----d~Vl~~~~~y~~~~~~~~~~~~~-  108 (378)
T TIGR01329        41 YTRSGNPTRTALESLLAKLDKADRAFAFSSGMAALDVITR-L-----LNNG-----DEIIAGDDLYGGTDRLLTQVVPR-  108 (378)
T ss_pred             cCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-H-----hCCC-----CEEEEcCCCchHHHHHHHHHHHH-
Confidence            3445577789999999999998999999999998887665 3     4567     99999999886543221111100 


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                              ....+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|++||+++|+|++|...
T Consensus       109 --------~G~~v~~vd~~d~~~le~~i~---~~tklv~le~psnptg~v~d----l~~I~~la~~~g~~vivD~a~~~~  173 (378)
T TIGR01329       109 --------SGVVVVHVDTTDLDKVKAALG---PKTKLVLLESPTNPLQKIVD----IRKISEMAHAQNALVVVDNTMMSP  173 (378)
T ss_pred             --------cCcEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCCccc
Confidence                    113344555568999999887   58999999999999999998    999999999999999999998521


Q ss_pred             cccccCcccccCCCCCcEE--EecccccC--CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                       ....++     ....|++  |.+|.++|  +. ..|+++.+ +.+.+.++..........+++.+..+...++.+  ..
T Consensus       174 -~~~~~l-----~~g~Di~v~S~tK~l~G~~~~-~~G~v~~~~~~~~~~~~~~~~~~G~~~~~~~a~l~~~~l~tl--~~  244 (378)
T TIGR01329       174 -LLCNPL-----ELGADIVYHSATKFLAGHSDV-MAGVLAVKGEEIAKKVYFLQNSTGSGLAPFDCWLLLRGIKTL--AI  244 (378)
T ss_pred             -ccCChh-----hcCCcEEEEecceeccCCccc-eeEEEEeCcHHHHHHHHHHHHhcCCcCCHHHHHHHHccCCCH--HH
Confidence             111111     2234655  66799886  34 57887764 455565554322222334555443333333322  12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259          250 LAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT  316 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  316 (374)
                      ..++...+...+.+.|++...    .+|+...         ...+.+.++.|.+.+.   ....+|++.|...++.++-+
T Consensus       245 R~e~~~~na~~la~~L~~~~~v~~v~~p~l~~~p~~~l~~~~~~g~~~~~sf~~~~~---~~~~~~~~~L~~~~i~~s~G  321 (378)
T TIGR01329       245 RIEKQQENARAIAMFLSTHPRVKKVRYAGLPSHPGFHLHFSQAKGAGSVLSFETGSV---ALSKRLVEATKLFSITVSFG  321 (378)
T ss_pred             HHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhCCCcceEEEEEECCH---HHHHHHHHhCcCcccccCCC
Confidence            355555666666666653211    1111110         1124567888888322   13678888886555555321


Q ss_pred             ---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                                 .++.+|++.+    -|+.+.+++-|.++++
T Consensus       322 ~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svG----lE~~~dl~~dl~~al~  374 (378)
T TIGR01329       322 SVNSLISMPCFMSHASIPAEVREERGLPEDLVRLSVG----IEDVDDLISDLDIAFV  374 (378)
T ss_pred             CCCceeeCCCccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHH
Confidence                                       1468999844    3466777777777776

This model represents cystathionine beta-lyase (alternate name: beta-cystathionase), one of several pyridoxal-dependent enzymes of cysteine, methionine, and homocysteine metabolism. This enzyme is involved in the biosynthesis of Met from Cys.

>PRK05967 cystathionine beta-lyase; Provisional

Probab=99.81  E-value=9.8e-19  Score=162.57  Aligned_cols=295  Identities=9%  Similarity=0.001  Sum_probs=182.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.+|..+.|++.++...+.+..++++||++|+..++..+     .++|     |+|++.++.|.+..........
T Consensus        56 y~YsR~gnPt~~~Le~~la~le~~~~~v~~sSG~aAi~~~l~al-----l~~G-----D~Vlv~~~~Y~~~~~l~~~~l~  125 (395)
T PRK05967         56 YTYGTRGTPTTDALCKAIDALEGSAGTILVPSGLAAVTVPFLGF-----LSPG-----DHALIVDSVYYPTRHFCDTMLK  125 (395)
T ss_pred             CccCCCCChHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHh-----cCCC-----CEEEEccCCcHHHHHHHHHHHH
Confidence            44556779999999999999887777788888999999999887     5677     9999999999775433211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.++.+.++++++   +++++|+++++.|+++.+.+    +++|+++|+++|+++|+|++|+
T Consensus       126 ~---------~Gi~v~~vd~~~~e~l~~al~---~~TklV~lesPsNP~l~v~d----l~~I~~la~~~g~~vvVD~t~a  189 (395)
T PRK05967        126 R---------LGVEVEYYDPEIGAGIAKLMR---PNTKVVHTEAPGSNTFEMQD----IPAIAEAAHRHGAIVMMDNTWA  189 (395)
T ss_pred             h---------cCeEEEEeCCCCHHHHHHhcC---cCceEEEEECCCCCCCcHHH----HHHHHHHHHHhCCEEEEECCcc
Confidence            1         112334444445677888887   57999999999998887776    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC--CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ...      ......+..|++  |.+|.++|  .. -+|+++.++++.+.+........-..+++.+......++-+.- 
T Consensus       190 ~p~------~~~pl~~GaDivv~S~tKy~~Gh~d~-~~G~v~~~~~~~~~l~~~~~~~G~~~~p~da~l~~rgl~Tl~l-  261 (395)
T PRK05967        190 TPL------YFRPLDFGVDISIHAATKYPSGHSDI-LLGTVSANEKCWPQLLEAHGTLGLCAGPDDTYQILRGLRTMGI-  261 (395)
T ss_pred             Cce------ecChhHcCCCEEEEecccccCCCCCe-eEEEEEcCHHHHHHHHHHHHHcCCCCCHHHHHHHHcCcccHHH-
Confidence            321      112222345554  78899886  34 5666666766555543221112224466665555555543322 


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCC--CchhHHHHHHHHHHCCeEe
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTA--LPVSAYDICLKMKERGILA  313 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~--~~~~~~~~~~~l~~~Gi~v  313 (374)
                       ..++..++...+.+.|++-..    .+|+...         ...+.|.++.|+++...  ......+|.+.|.--.+.+
T Consensus       262 -R~~~~~~na~~lA~~L~~hp~v~~V~yPgl~s~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~~~f~~~l~l~~~~~  340 (395)
T PRK05967        262 -RLEHHRKSALEIARWLEGRPDVARVLHPALPSFPGHEIWKRDFSGASGIFSFVLAAGPEKGKAKAHAFLDALEIFGLGY  340 (395)
T ss_pred             -HHHHHHHHHHHHHHHHHhCCCCcEEECCCCCCCccHHHHHHhCCCCceEEEEEEcCCCcccHHHHHHHHHhCCcceEcc
Confidence             245555566666666654311    1221111         12245788889886320  0113444555443211111


Q ss_pred             cc---------------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 KP---------------------THDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ~~---------------------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +-                     ..++.+||+.++    |+.+.+++-|.++++
T Consensus       341 slG~~~sLi~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~dLi~Dl~~Al~  390 (395)
T PRK05967        341 SWGGYESLALHVKLGDRTVAKAPYAGPVIRLQIGL----EDVPDLKADLERGFA  390 (395)
T ss_pred             CCCCcceeeeeCCCChhHhhhccCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence            10                     013579999554    355566666666665

>PRK06702 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=2.4e-18  Score=161.66  Aligned_cols=289  Identities=11%  Similarity=0.115  Sum_probs=185.3

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      +..+|....|++.++++.|.+.++.++||++|+.+++..+     .++|     |+||+..+.|.+...........   
T Consensus        57 R~~nPtv~~lE~~la~leg~~~av~~~SG~aAi~~al~al-----l~~G-----D~VI~~~~~Y~~T~~~~~~~l~~---  123 (432)
T PRK06702         57 RIGNPTLAAFEQKLAELEGGVGAVATASGQAAIMLAVLNI-----CSSG-----DHLLCSSTVYGGTFNLFGVSLRK---  123 (432)
T ss_pred             CCCCcHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh-----cCCC-----CEEEECCCchHHHHHHHHHHHHH---
Confidence            3447889999999999999999999999999999999877     5677     99999999996554332111000   


Q ss_pred             cccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           97 IRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                            ...++.+++.+ |+++++++|+   ++|++|+++++.|+++.+.+    +++|+++|++||+++|+|++++   
T Consensus       124 ------~Gi~v~~vd~~~d~~~l~~~I~---~~Tk~I~~e~pgnP~~~v~D----i~~I~~iA~~~gi~livD~T~~---  187 (432)
T PRK06702        124 ------LGIDVTFFNPNLTADEIVALAN---DKTKLVYAESLGNPAMNVLN----FKEFSDAAKELEVPFIVDNTLA---  187 (432)
T ss_pred             ------CCCEEEEECCCCCHHHHHHhCC---cCCeEEEEEcCCCccccccC----HHHHHHHHHHcCCEEEEECCCC---
Confidence                  11234444543 8899999997   68999999999999999998    9999999999999999999985   


Q ss_pred             ccccCcccccCCCCCcEE--EecccccC-Cccchhhhee-CH----------HHHh---------------------hcC
Q 017259          176 RSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DK----------EVML---------------------CIQ  220 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~-~~----------~~~~---------------------~~~  220 (374)
                         .++....+....|++  |+||.++| +. -+|.++. ..          .+..                     ..+
T Consensus       188 ---tP~~~~pl~~GADIvv~S~TKy~~Ghsd-~l~G~v~~~~~~~w~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~  263 (432)
T PRK06702        188 ---TPYLCQAFEHGANIIVHSTTKYIDGHAS-SLGGIVIDGGNFDWTNGKYPELVEPDPSYHGVSYVQNFGAAAYIVKAR  263 (432)
T ss_pred             ---chhhCChhhcCCCEEEEccccccCCCcc-eeceEEEeCCCcccccccccccccccccccccchhhccchhhHHHHHH
Confidence               122333333445654  88897775 22 2333221 11          1110                     000


Q ss_pred             -CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCceee---------E-EEEeee
Q 017259          221 -PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKE---------V-RGRGLF  285 (374)
Q Consensus       221 -~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~---------~-~~~g~~  285 (374)
                       ..........+++.+..++..|+-+.  -..++.+++..++.+.|+....    .+|+....         . .+.|.+
T Consensus       264 ~~~~~~~g~~~sp~~a~l~~rgL~Tl~--lR~~r~~~Na~~la~~L~~~p~V~~V~yPgl~~~p~~~l~~~~~~~g~gg~  341 (432)
T PRK06702        264 VQLLRDYGNCMSPFNAYISNIGLETLH--LRMERHSENALAVAKWLADHERIEWVNYPGLDSNENYSLAQKYLKKGASGV  341 (432)
T ss_pred             HHHHHHccCCCCHHHHHHHHhccCcHH--HHHHHHHHHHHHHHHHHHhCCCcceEECCCCCCCccHHHHHHhCcCCCceE
Confidence             00112334678888777777776543  3456666777777777775421    12211110         1 245788


Q ss_pred             EEEEeccCCCchhHHHHHHHHHHCCeEe----------ccC-----------------CCCEEEEecCCCCCHHHHHHHH
Q 017259          286 NAVEFDKTALPVSAYDICLKMKERGILA----------KPT-----------------HDTIVRLTPPLSISSNELQEGS  338 (374)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v----------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~  338 (374)
                      +.|+++...  ....+|++.|.--.+.+          .|.                 .++.+|++++    -|+.+.++
T Consensus       342 ~sf~l~~~~--~~~~~f~~~l~l~~~a~slGg~~Slv~~p~~~th~~~~~~~~~~~Gi~~~liRlSvG----lEd~eDLi  415 (432)
T PRK06702        342 LTFGIKGGL--EAAKEFIANVKLATLVTHVADARTCVIHPASTTHRQLSAEDQRLAGVTSDLIRLSVG----IEDVSDII  415 (432)
T ss_pred             EEEEecCCH--HHHHHHHHhCccceeccccCCCCcceECCCCCCcccCCHHHHHhcCCCCCeEEEEec----cCCHHHHH
Confidence            888886321  13445555543221111          111                 1468999944    35677788


Q ss_pred             HHHHHHHh
Q 017259          339 KALHDVLE  346 (374)
Q Consensus       339 ~~l~~~~~  346 (374)
                      +-|.++++
T Consensus       416 ~Dl~~Al~  423 (432)
T PRK06702        416 ADLEAALV  423 (432)
T ss_pred             HHHHHHHh
Confidence            88888886

>COG1003 GcvP Glycine cleavage system protein P (pyridoxal-binding), C-terminal domain [Amino acid transport and metabolism]

Probab=99.80  E-value=2.5e-17  Score=147.40  Aligned_cols=307  Identities=19%  Similarity=0.179  Sum_probs=204.1

Q ss_pred             CCcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .++..+|+++|++++|.+.+ +.-++|+++-...+.+++.|+ ..+| +..|++++++ -+.||.+.+..++.+      
T Consensus       108 l~li~~Lq~~L~~ITG~DavsLQP~AGAqGE~aGll~Ir~YH-e~rG-~~~R~~~LIP-~SAHGTNPASAam~G------  178 (496)
T COG1003         108 LELIYELQEWLKEITGMDAVSLQPNAGAQGEYAGLLAIRAYH-ESRG-EGHRNICLIP-DSAHGTNPASAAMAG------  178 (496)
T ss_pred             HHHHHHHHHHHHHhcCCceeeccCCCCcchhhHHHHHHHHHH-HHcC-CCcCcEEEee-ccccCCChhhHhhcC------
Confidence            45577899999999999987 777789999999999999998 6666 3344555554 555999998888876      


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-  172 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-  172 (374)
                            .+++.++++     |+++|++++.   ++++++++..++. -|..   ++.+.+|+++.|++|-.|+.|.+-- 
T Consensus       179 ------~~VV~V~~~~~G~VDlddLk~k~~---~~~AalMiTnPsT-~GvF---E~~I~ei~~ivH~~Gg~vY~DGANlN  245 (496)
T COG1003         179 ------FKVVVVKCDENGNVDLDDLRAKAE---DNLAALMITNPST-LGVF---EEDIREICEIVHEAGGQVYYDGANLN  245 (496)
T ss_pred             ------ceEEEEecCCCCCccHHHHHHHhc---cceeEEEeccCcc-cccc---hhhHHHHHHHHHHcCCEEEecCcchh
Confidence                  445666654     8999999988   6899988866543 3432   4559999999999999999997643 


Q ss_pred             ---CCcccccCcccccCCCCCcEE------EecccccCCccchhh-heeCHHHHhhcCC----C---------------C
Q 017259          173 ---GLARSGRMLASDWEEVRPDMV------ILGKALGGGVIPVSA-VLADKEVMLCIQP----G---------------E  223 (374)
Q Consensus       173 ---~~~~~g~~~~~~~~~~~~d~~------s~sK~~~~G~~~~G~-~~~~~~~~~~~~~----~---------------~  223 (374)
                         |..+.|.        +..|++      |||-..|||- |... +...+++...+-.    .               .
T Consensus       246 A~vG~~rPGd--------~G~DV~HlNLHKTF~iPHGGGG-PG~GPvgVk~~L~pfLP~p~~~~~~~~y~~~~~~~~s~g  316 (496)
T COG1003         246 AIVGLARPGD--------MGFDVVHLNLHKTFCIPHGGGG-PGAGPVGVKAHLAPFLPGPVVYHDVGEYRLDYDGKKSIG  316 (496)
T ss_pred             hhhccccccc--------cccceEEeecccccccCCCCCC-CCCCceehHhhccccCCCCcccCCCccccccCCCCccce
Confidence               4444443        223444      6666666544 4433 4444444332211    0               0


Q ss_pred             CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccC--CCch
Q 017259          224 HGSTFGGNPLASAVAIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKT--ALPV  297 (374)
Q Consensus       224 ~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~--~~~~  297 (374)
                      ....+.+|.....-+++-++.+..+++.+..+   -+.+++..+|+....    ++.... ..-+=+.++....  ..+.
T Consensus       317 ~~~a~~Gs~~il~~a~~YI~~mG~~GL~~ase~AvLNANYia~rL~~~y~----~~y~~~~~~~HE~ild~r~l~~~~Gv  392 (496)
T COG1003         317 VSAAPYGSASILPIAWAYIRMMGADGLKQASEVAVLNANYIARRLKGYYP----VPYTGENRVAHECILDARPLKKETGV  392 (496)
T ss_pred             eeccccCcchHHHHHHHHHHHHhHHHHHHHHHHHHHhHHHHHHHhhhcCc----cccCCCCcceeEEEeechHhHhhcCC
Confidence            11223445556667788888887765543333   367888887776321    222111 1222233333211  1245


Q ss_pred             hHHHHHHHHHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCC
Q 017259          298 SAYDICLKMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPA  362 (374)
Q Consensus       298 ~~~~~~~~l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~  362 (374)
                      +..+++++|++.|+..-..     -.+.++|-|..+.+++++|+++++|.++.+ +...++.-+..|+|.
T Consensus       393 ~~~DvAKrLlD~GfHaPT~~FPliV~~tLMIEPTEsEsk~eLDrf~dami~I~~-Ea~~~~~~~~~~~P~  461 (496)
T COG1003         393 RALDVAKRLLDYGFHAPTMYFPLIVAGTLMIEPTESESKEELDRFIDAMIAIRE-EADAVPAGPLKDNPL  461 (496)
T ss_pred             cHHHHHHHHHhcCCCCCcccCccccccceeecCCCCCCHHHHHHHHHHHHHHHH-HHHhccCCccccCcc
Confidence            7899999999999987543     268999999999999999999999999998 777775333444443

>PRK08248 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.80  E-value=1.8e-18  Score=163.59  Aligned_cols=166  Identities=20%  Similarity=0.194  Sum_probs=124.6

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++....|++.|+++.|.+..++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        56 ~~y~r~~~p~~~~Le~~lA~leg~~~al~~~sG~~Ai~~al~~l-----l~~G-----D~Vlv~~~~y~~t~~~~~~~~~  125 (431)
T PRK08248         56 NIYTRIMNPTTDVFEKRIAALEGGIGALAVSSGQAAITYSILNI-----ASAG-----DEIVSSSSLYGGTYNLFAHTLP  125 (431)
T ss_pred             ceeECCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEccCchhhHHHHHHHHHH
Confidence            33455678889999999999999999999999999999999877     4567     9999999998664433221111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|+++|+++|+|++++
T Consensus       126 ~---------~Gv~v~~vd~~d~e~l~~ai~---~~tklV~l~sp~NPtG~v~d----i~~I~~la~~~gi~vIvD~t~a  189 (431)
T PRK08248        126 K---------LGITVKFVDPSDPENFEAAIT---DKTKALFAETIGNPKGDVLD----IEAVAAIAHEHGIPLIVDNTFA  189 (431)
T ss_pred             h---------CCEEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEeCCCC
Confidence            0         112344555568999999887   57899999999999999998    9999999999999999999986


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccchhhhee
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA  211 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~  211 (374)
                      .. .     .........|++  |++|.++| |. ++|+++.
T Consensus       190 ~~-~-----~~~pl~~gaDivv~S~tK~lgg~g~-~~Gg~v~  224 (431)
T PRK08248        190 SP-Y-----LLRPIEHGADIVVHSATKFIGGHGT-SIGGVIV  224 (431)
T ss_pred             cc-c-----cCChhHcCCCEEEEcCccccCCCCC-ceEEEEE
Confidence            21 1     111112345655  66799996 66 7777554

>PRK05939 hypothetical protein; Provisional

Probab=99.79  E-value=2.3e-18  Score=161.51  Aligned_cols=166  Identities=16%  Similarity=0.169  Sum_probs=124.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.+|...+|+++|+++.|.+..+.++||++|+..++..+     .++|     |+|++.++.|.+.......+..
T Consensus        39 ~~Y~r~g~p~~~~lE~~la~leg~~~~v~~ssG~~Ai~~~l~al-----l~~G-----d~Vv~~~~~y~~t~~~~~~l~~  108 (397)
T PRK05939         39 FTYARQGTPTTAALEAKITKMEGGVGTVCFATGMAAIAAVFLTL-----LRAG-----DHLVSSQFLFGNTNSLFGTLRG  108 (397)
T ss_pred             CCcCCCCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHH-----cCCC-----CEEEECCCccccHHHHHHHHHh
Confidence            44555678899999999999999988899999999999999877     5677     9999999887554322111110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                                ....+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|+++|+++|+|++|+
T Consensus       109 ----------~G~~v~~v~~~d~e~l~~~l~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~t~a  171 (397)
T PRK05939        109 ----------LGVEVTMVDATDVQNVAAAIR---PNTRMVFVETIANPGTQVAD----LAGIGALCRERGLLYVVDNTMT  171 (397)
T ss_pred             ----------cCCEEEEECCCCHHHHHHhCC---CCCeEEEEECCCCCCCCHHh----HHHHHHHHHHcCCEEEEECCcc
Confidence                      112344555568999999886   57999999999999998887    9999999999999999999986


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD  212 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~  212 (374)
                      ...      .+.......|++  |++|.++| |. .+|+++..
T Consensus       172 ~~~------~~~~~~~gaDivv~S~sK~~~g~g~-~igg~v~~  207 (397)
T PRK05939        172 SPW------LFRPKDVGASLVINSLSKYIAGHGN-ALGGAVTD  207 (397)
T ss_pred             ccc------ccCccccCCEEEEecCeecccCCCC-eEEEEEec
Confidence            211      112222234544  88899997 77 78886653

>PRK04366 glycine dehydrogenase subunit 2; Validated

Probab=99.79  E-value=5.1e-17  Score=156.47  Aligned_cols=309  Identities=18%  Similarity=0.162  Sum_probs=186.6

Q ss_pred             CcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           21 DKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      +...++.+++++++|.+.+ ++.++|+.+...++.+++.+. ..+| +.++++|++..+.|+.+...+. ..+.      
T Consensus       113 el~~~~~~~la~l~G~~~~~l~~~~GA~a~~~~l~~~r~~~-~~~G-d~~~~~Vlv~~~~hp~~~~~~~-~~G~------  183 (481)
T PRK04366        113 ELMYELQEWLKEITGMDAVTLQPAAGAHGELTGLLMIRAYH-EARG-DTKRTEVIVPDSAHGTNPASAA-MAGF------  183 (481)
T ss_pred             HHHHHHHHHHHHHhCCCceEEEeCcHHHHHHHHHHHHHHHh-hccC-cCCCCEEEEcCCccHhHHHHHH-HcCC------
Confidence            4466788888888888765 444566666655444443221 3444 1123689999998765544322 2221      


Q ss_pred             CCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259          100 FGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus       100 ~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                            .+..++.     .|+++|++++.   +++++++++.++ ++|.+.   ..+++|.++|+++|.++++|.++. .
T Consensus       184 ------~vv~v~~~~~~~~D~e~L~~~i~---~~t~~V~v~~Pn-~tG~~~---~dl~eI~~~a~~~gal~iVD~a~~-~  249 (481)
T PRK04366        184 ------KVVEIPSNEDGLVDLEALKAAVG---EDTAALMLTNPN-TLGLFE---RNILEIAEIVHEAGGLLYYDGANL-N  249 (481)
T ss_pred             ------EEEEeecCCCCCcCHHHHHhhcc---cCCeEEEEeCCC-Cccccc---hHHHHHHHHHHHcCCEEEEEecCh-h
Confidence                  1111211     27889988886   568888887654 677551   239999999999999999999985 1


Q ss_pred             cccccCcccccCCCCCcEEEec--cccc-----CCccchhhheeCHHHHhhcCCCC-------------------CCCCC
Q 017259          175 ARSGRMLASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGE-------------------HGSTF  228 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~s--K~~~-----~G~~~~G~~~~~~~~~~~~~~~~-------------------~~~~~  228 (374)
                      +..|..   ....+..|+++++  |+++     ||. .+|++..++++.+.+....                   ..-.+
T Consensus       250 ~~~g~~---~~~~~GaD~~~~~~hK~l~~P~g~Ggp-~~G~l~~~~~~~~~lp~~~v~~~g~~~~l~~~r~~~i~r~~a~  325 (481)
T PRK04366        250 AILGKA---RPGDMGFDVVHLNLHKTFSTPHGGGGP-GSGPVGVKEELAPFLPVPVVEKDGDRYRLDYDRPKSIGRVRAF  325 (481)
T ss_pred             hhcccC---CccccCCCEEEEechhhcCCCCCCCCC-CeeeeeehhhhHhhCCCCeeeccCCceeecccccccCCCcccc
Confidence            111211   1122346777554  8877     233 4567777777766653110                   00011


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICL  304 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~  304 (374)
                      +++...+.++...+..+..+++   .++...+.++++++|+++ ..   +... .....-+.+..+. ...+.+..++.+
T Consensus       326 t~~~l~~~~a~~~l~~~G~~Gl~~~a~~~~~~a~~l~~~L~~~-~~---~~~~-~~~~~~~~~~~~~~~~~g~~~~~v~~  400 (481)
T PRK04366        326 YGNFGVLVRAYAYIRSLGAEGLREVSEDAVLNANYLKARLKDI-YD---LPYD-RPCMHEFVLSGKKLKETGVRTLDIAK  400 (481)
T ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-Cc---ccCC-CCeeEEEEEECccccccCCCHHHHHH
Confidence            2344555566666666665544   355566788888888876 22   2211 1111112222211 000125788999


Q ss_pred             HHHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCCCCCCCCCCC
Q 017259          305 KMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPAT  363 (374)
Q Consensus       305 ~l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  363 (374)
                      .|.++||.+...     ..+.+|++++..+|++|+|++++.|+++.+ +....+.. .+.+|+.
T Consensus       401 ~L~~~Gi~~~~~~~p~~~~~~l~is~~e~~t~edid~l~~~l~~i~~-~~~~~~~~-~~~~p~~  462 (481)
T PRK04366        401 RLLDYGFHPPTIYFPLIVPEALMIEPTETESKETLDAFIAAMKQIAE-EAKENPEL-VKEAPHN  462 (481)
T ss_pred             HHHHCCccCCccccccccCCeEEEcccCCCCHHHHHHHHHHHHHHHH-HHHhCcHh-HhhCCCC
Confidence            999999987621     256899999999999999999999999988 66554432 3344443

>PRK06176 cystathionine gamma-synthase/cystathionine beta-lyase; Validated

Probab=99.79  E-value=3.6e-18  Score=159.53  Aligned_cols=292  Identities=14%  Similarity=0.085  Sum_probs=175.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.+|...+|+++++++.|.+..++++||+.|+.+++. +     .++|     |+|++.++.|++..........
T Consensus        42 ~~y~r~~~p~~~~Le~~la~l~g~~~al~~~SG~~Al~~~l~-~-----l~pG-----d~Vi~~~~~y~~t~~~~~~~~~  110 (380)
T PRK06176         42 YEYSRSGNPTRFALEELIADLEGGVKGFAFASGLAGIHAVFS-L-----FQSG-----DHVLLGDDVYGGTFRLFDKVLV  110 (380)
T ss_pred             CcccCCCChhHHHHHHHHHHHhCCCCEEEECCHHHHHHHHHH-H-----cCCC-----CEEEEcCCChhHHHHHHHHHHH
Confidence            445567788899999999999998889999999999986553 3     4567     9999999998665432222111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|++||+++|+|++|+
T Consensus       111 ~---------~gi~v~~vd~~d~e~l~~ai~---~~t~lV~lesP~Nptg~~~d----i~~I~~la~~~gi~vivD~t~a  174 (380)
T PRK06176        111 K---------NGLSCTIIDTSDLSQIKKAIK---PNTKALYLETPSNPLLKITD----LAQCASVAKDHGLLTIVDNTFA  174 (380)
T ss_pred             h---------cCeEEEEcCCCCHHHHHHhcC---cCceEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEECCcc
Confidence            0         112234444458999998886   57999999999999999988    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .. ..+.+     .+...|++  |++|.++| |-.-.|+++.+ +++.+.++..........++.........++-+.  
T Consensus       175 ~~-~~~~p-----~~~gaDivv~S~tK~l~g~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~~~l~~~gl~tl~--  246 (380)
T PRK06176        175 TP-YYQNP-----LLLGADIVVHSGTKYLGGHSDVVAGLVTTNNEALAQEIAFFQNAIGGVLGPQDSWLLQRGIKTLG--  246 (380)
T ss_pred             cc-ccCCc-----cccCCCEEEecCceeccCCccceeeEEEecHHHHHHHHHHHHHHhcCCCCHHHHHHHHhccCcHH--
Confidence            42 11222     12345665  56699985 32134556664 4555555432111111223333333332332111  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE---
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL---  312 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~---  312 (374)
                      -..++.+++..++.+.|+....    .+|....         ...+.|.++.|+++..   ....+|++.|.--.+.   
T Consensus       247 ~R~~~~~~~a~~la~~L~~~p~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~s~~~~~~---~~~~~f~~~l~~~~~~~s~  323 (380)
T PRK06176        247 LRMEAHQKNALCVAEFLEKHPKVEKVYYPGLPTHPNHELAKKQMRGFSGMLSFTLKND---SEAVAFVESLKLFILGESL  323 (380)
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCH---HHHHHHHHcCCcceEccCC
Confidence            1234444555555555554310    0111110         1234578888888632   1344455544321111   


Q ss_pred             -------eccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 -------AKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 -------v~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                             +.|.                 ..+.+|+++++    |+.+.+++-|+++++
T Consensus       324 G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liR~svGl----E~~~dli~dl~~Al~  377 (380)
T PRK06176        324 GGVESLVGIPAFMTHACIPKEQREAAGIRDGLVRLSVGI----EHEQDLLEDLEQAFA  377 (380)
T ss_pred             CCCCceeeCCcccccccCCHHHHHhcCCCcCeEEEEecc----CCHHHHHHHHHHHHh
Confidence                   1111                 14789999443    456667777777776

>PRK08134 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.79  E-value=5.1e-18  Score=160.51  Aligned_cols=163  Identities=16%  Similarity=0.147  Sum_probs=120.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.+|...+++++++++.|.+.+++++||++|+..++..+     .++|     |+||+....|++..........
T Consensus        56 ~~y~R~~~p~~~~le~~lA~l~g~~~av~~sSGt~Al~~al~~l-----l~~G-----d~Vi~~~~~y~~t~~~~~~~l~  125 (433)
T PRK08134         56 HVYSRISNPTVAVLEERVAALEGGVGAIATASGQAALHLAIATL-----MGAG-----SHIVASSALYGGSHNLLHYTLR  125 (433)
T ss_pred             ceeecCcChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCccHHHHHHHHHHHh
Confidence            44455678889999999999999888999999999999999877     4567     9999999998654332211100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+.+++.+|+++++++|+   ++|++|+++++.|++|.+.+    +++|.++|++||+++|+|.+|+
T Consensus       126 ~---------~Gi~v~~vd~~d~~~l~~~i~---~~TklV~~e~~~np~g~v~D----i~~I~~la~~~gi~livD~t~a  189 (433)
T PRK08134        126 R---------FGIETTFVKPGDIDGWRAAIR---PNTRLLFGETLGNPGLEVLD----IPTVAAIAHEAGVPLLVDSTFT  189 (433)
T ss_pred             h---------CCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCcccCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         112344555568999999987   68999999999999999998    9999999999999999999997


Q ss_pred             -CCcccccCcccccCCCCCcEEEe--cccccC-Cccchhhh
Q 017259          173 -GLARSGRMLASDWEEVRPDMVIL--GKALGG-GVIPVSAV  209 (374)
Q Consensus       173 -~~~~~g~~~~~~~~~~~~d~~s~--sK~~~~-G~~~~G~~  209 (374)
                       ++.  .     .......|++++  .|.++| |- .+|++
T Consensus       190 ~~~~--~-----~pl~~GaD~vv~S~tK~l~g~g~-~~gG~  222 (433)
T PRK08134        190 TPYL--L-----RPFEHGADLVYHSATKFLGGHGT-AIGGV  222 (433)
T ss_pred             cccc--C-----CchhcCCCEEEeccccccCCCCC-ceEEE
Confidence             221  1     112345676644  498875 43 34443

>PTZ00094 serine hydroxymethyltransferase; Provisional

Probab=99.78  E-value=2.9e-17  Score=157.34  Aligned_cols=286  Identities=15%  Similarity=0.096  Sum_probs=173.4

Q ss_pred             HHHhcccCCC--eEEec---CChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-ccccCC-ccccccC
Q 017259           28 ERLTSMFGYD--MVLPM---NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCD-NEAIRGF  100 (374)
Q Consensus        28 ~~l~~~~~~~--~~~~~---~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-~~~~~~-~~~~~~~  100 (374)
                      ++++++++.+  ++.++   +||++|+..++..+     .++|     |+|++.+.. ||..... ..+... ....   
T Consensus        87 ~~~a~lf~a~~~~~~~~~~~~sgt~an~~v~~al-----~~~g-----d~Ii~~~~e-hg~~l~~~~~l~~~~~~~~---  152 (452)
T PTZ00094         87 KRALEAFGLDPEEWGVNVQPYSGSPANFAVYTAL-----LQPH-----DRIMGLDLP-SGGHLTHGFYTAKKKVSAT---  152 (452)
T ss_pred             HHHHHHhCCCcccceeecCCCchHHHHHHHHHHh-----cCCC-----CEEEecccc-cCCcccccccccccccccc---
Confidence            4677777654  44455   79999999999888     4567     999987666 4433222 111000 0000   


Q ss_pred             CCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259          101 GPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus       101 ~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                       ....++..+++     .|++++++.++++  +++.+++.  .+.+|...|    +++|.++|+++|+++++|++|+ +|
T Consensus       153 -~~~~~~~~~~~~~~g~id~~~L~~~l~~~--~~~lvi~~--~s~~g~~~d----i~~I~~i~~~~ga~l~vDaaq~-~G  222 (452)
T PTZ00094        153 -SIYFESLPYQVNEKGLIDYDKLEELAKAF--RPKLIIAG--ASAYPRDID----YKRFREICDSVGAYLMADIAHT-SG  222 (452)
T ss_pred             -eeeeeeeecccCCCCCcCHHHHHHHHHHh--CCCEEEEe--CCCCCCccC----HHHHHHHHHHcCCEEEEeccch-hc
Confidence             00001111111     2899999999754  34445542  345788888    9999999999999999999998 22


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCC----CC-CCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQP----GE-HGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~----~~-~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ..+........ ...|++++|  |++.|.. + |+++.++++.+.+..    .. .....+++....++..++++.+...
T Consensus       223 ~i~~~~~~~~~-~~~D~l~~S~hK~l~GP~-G-g~l~~~~~~~~~l~~~~~~~~~p~~~G~~~~~~iaal~~al~~~~~~  299 (452)
T PTZ00094        223 LVAAGVLPSPF-PYADVVTTTTHKSLRGPR-S-GLIFYRKKVKPDIENKINEAVFPGLQGGPHNHQIAAIAVQLKEVQSP  299 (452)
T ss_pred             cccCCCCCCCC-CCCcEEEcCCccCCCCCC-c-eEEEEecccchHHHHhhccccCCCCCCCchHHHHHHHHHHHHHHhCh
Confidence            22211000111 146777665  9997665 3 666666554332211    10 1111244667777788888887442


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc----C-----
Q 017259          249 ---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T-----  316 (374)
Q Consensus       249 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~-----  316 (374)
                         ++.+++.++.+++.+.|++.+..   +.... .......+.+...  +.+..++...|.++||.+..    +     
T Consensus       300 ~~~~~~~~i~~l~~~l~~~L~~~g~~---v~~~~-~~~~~~~v~~~~~--~~~~~~~~~~L~~~gI~vs~~~~p~~~~~~  373 (452)
T PTZ00094        300 EWKEYAKQVLKNAKALAAALEKRGYD---LVTGG-TDNHLVLVDLRPF--GITGSKMEKLLDAVNISVNKNTIPGDKSAL  373 (452)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhCCcE---EecCC-CCCceEeecCCcC--CCCHHHHHHHHHHCCcEEecccCCCCCcCC
Confidence               46788888888888888664211   21110 0112233333221  11567888888888999952    1     


Q ss_pred             CCCEEEEecCCCCC----HHHHHHHHHHHHHHHh
Q 017259          317 HDTIVRLTPPLSIS----SNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ~~~~lRi~~~~~~~----~e~i~~~~~~l~~~~~  346 (374)
                      .++++|++++..++    ++|++++++.|.++++
T Consensus       374 ~~~~vRis~~~~tt~g~~~~di~~l~~~l~~~~~  407 (452)
T PTZ00094        374 NPSGVRLGTPALTTRGAKEKDFKFVADFLDRAVK  407 (452)
T ss_pred             CCCeEEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            24789999976665    9999999999999987

>KOG1358 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.78  E-value=4.4e-18  Score=150.04  Aligned_cols=296  Identities=17%  Similarity=0.178  Sum_probs=206.4

Q ss_pred             cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           16 RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        16 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      +++.-+.+.+++++|++++|.+..++.+.|-+++..++.++     .++|     |.+++.+..- -..+..+.++    
T Consensus       134 FYGt~DvHldlE~~iakF~G~E~aivYs~gF~ti~S~ipaf-----sKrG-----DIi~~de~~n-faIq~GlqlS----  198 (467)
T KOG1358|consen  134 FYGTIDVHLDLEKRIAKFMGTEDAIVYSYGFSTIESAIPAF-----SKRG-----DIIFVDEAVN-FAIQKGLQLS----  198 (467)
T ss_pred             ccccceeecccHHHHHHhhCCcceeeeccccchhhhcchhh-----hccC-----cEEEEehhhh-HHHHHHHhhh----
Confidence            45778889999999999999999999999999999999988     7888     9998877653 2222222222    


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcC------Cc----EEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESG------DQ----IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~------~~----~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                              ...+..+.++|++++|+.+.+..      ++    .+.++++..+.|+|.+++    +.+|.++..||...+
T Consensus       199 --------RS~i~~Fkhndm~~lerll~E~~~~~~K~~k~~~~Rrfiv~EGl~~N~g~i~p----l~~iv~lk~Kyk~Rv  266 (467)
T KOG1358|consen  199 --------RSTISYFKHNDMEDLERLLPEQEDEDQKNPKKALTRRFIVVEGLYANTGDICP----LPEIVKLKNKYKFRV  266 (467)
T ss_pred             --------hheeEEecCCCHHHHHHhccCcchhhhhccccccceEEEEEEeeccCCCcccc----cHHHHHHHhhheEEE
Confidence                    24466777789999987766421      11    577888899999999999    999999999999999


Q ss_pred             EEecccc-C-CcccccCcccccCCCC---CcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCCCC--CHHHHH
Q 017259          166 IADEIQS-G-LARSGRMLASDWEEVR---PDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG--NPLASA  236 (374)
Q Consensus       166 i~Dea~~-~-~~~~g~~~~~~~~~~~---~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~  236 (374)
                      |.||.++ | ++++|.. ..+++++.   .|+++.|  -++++   ..|+++++..+.+.-+-...++.|+.  ++....
T Consensus       267 ildEs~SfG~lg~~GrG-vteH~~v~~~~iDiv~~sm~~alas---~GgFc~G~~~i~~hQrLSg~~Y~fSAslPp~la~  342 (467)
T KOG1358|consen  267 ILDESLSFGVLGKTGRG-VTEHFGVPITDIDIVTASMETALAS---GGGFCAGKSFIADHQRLSGSGYCFSASLPPYLAG  342 (467)
T ss_pred             EEecccccccccccCcc-ccccCCCCccceeeeeecccccccc---cCceeecceeeEeeeeccccceeeeccCchhhhh
Confidence            9999998 3 4666665 44666654   3455544  34441   22346665555444444445666644  666666


Q ss_pred             HHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHHHHHCC
Q 017259          237 VAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERG  310 (374)
Q Consensus       237 aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~G  310 (374)
                      |+..++..+..+ ++.+.++.....+...++...    .+.......+.++.+.+.....     ...-+++++.++.+|
T Consensus       343 aa~~ai~i~~~~p~~~~~L~~k~~~~H~~l~~~s----~~~v~~~~~SPi~hl~l~~~~~s~e~e~~lL~eivd~~i~~~  418 (467)
T KOG1358|consen  343 AAIKAILIEEWNPEIVQPLRAKVAKFHAALSSNS----GFIVSGSPESPIIHLQLERSYGSREKEEKLLEEIVDKCIAEG  418 (467)
T ss_pred             hHHHHHHHHhhCcchhhhhhccccccchhhhcCC----ceEEecCcCCceeeeeecccccchHHHHHHHHHHHHHHHhhc
Confidence            777777776554 566777777777777666532    1222233345666666644211     122456888888778


Q ss_pred             eEeccC----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          311 ILAKPT----------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       311 i~v~~~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+...          -+..+||++...+++||++++++.|++...
T Consensus       419 ~ll~~a~~~~~~e~~~~~pSiri~~~a~~seeel~ra~~~ik~~~~  464 (467)
T KOG1358|consen  419 VLLTRAKYLEKLERCPIPPSIRICVSAGMSEEELERAAELIKEVAS  464 (467)
T ss_pred             ceehhhhhhhhcccCCCCCcEEEEEeCCCCHHHHHHHHHHHHHHHH
Confidence            887542          256899999999999999999999988765

>PLN02509 cystathionine beta-lyase

Probab=99.78  E-value=6.9e-18  Score=159.97  Aligned_cols=290  Identities=11%  Similarity=0.107  Sum_probs=179.5

Q ss_pred             CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++.+.++.+++++++++++.+.+.++.++||++|+..++ .+     .++|     |+|++..+.|.+............
T Consensus       127 Y~r~gnpt~~aLE~~lA~leg~e~ai~~~SG~aAi~~il-~l-----l~~G-----D~VI~~~~~y~~t~~ll~~~l~~~  195 (464)
T PLN02509        127 YTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVT-HL-----IKNG-----EEIVAGDDVYGGSDRLLSQVVPRS  195 (464)
T ss_pred             cCCCCCHHHHHHHHHHHHHhCCCEEEEeCcHHHHHHHHH-HH-----hCCC-----CEEEEcCCchhhHHHHHHHHHHHC
Confidence            344456789999999999999999999999998875544 33     4677     999999999866532221110000


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      +         ..+..++..|+++++++++   +++++++++++.|++|.+.+    +++|.++|++||+++|+|++|+..
T Consensus       196 G---------~~v~~vd~~d~e~l~~ai~---~~TklV~lesPsNPtG~i~D----l~~I~~lAk~~g~~lIVD~A~a~~  259 (464)
T PLN02509        196 G---------VVVKRVNTTNLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKIAEMAHAQGALVLVDNSIMSP  259 (464)
T ss_pred             C---------eEEEEeCCCCHHHHHHhCC---cCCeEEEEECCCCCCCCHHH----HHHHHHHHHHcCCEEEEECCcccc
Confidence            0         1233344457889988886   57899999999999998877    999999999999999999998622


Q ss_pred             cccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL  250 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~  250 (374)
                       ..+.+     .+...|++  |++|.++| |-+-.|.+..+ +.+.+.++..........+++.+..++..++.+.  ..
T Consensus       260 -~~~~p-----l~~gaDivv~S~tK~l~G~gdv~gG~v~~~~~~l~~~~~~~~~~~g~~l~p~~A~l~lr~L~tL~--~R  331 (464)
T PLN02509        260 -VLSRP-----LELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--LR  331 (464)
T ss_pred             -ccCCh-----hhcCCcEEEecCcccccCCCccceeEEEeccHHHHHHHHHHHHhcCCCcCHHHHHHHHhhhhhHH--HH
Confidence             11221     12345665  66799886 32024555554 3343333211111122346777777777777653  34


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe----
Q 017259          251 AERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA----  313 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v----  313 (374)
                      .++.+++..++.+.|+....    .+|+...         ...+.|.++.|.+.+.   ..+..|++.|.--.+.+    
T Consensus       332 ~~r~~~nA~~la~~L~~~p~V~~V~yPgL~~~p~~~l~~~~~~g~gg~~sf~~~~~---~~~~~f~~~l~l~~~a~slG~  408 (464)
T PLN02509        332 IEKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV---ALSKHLVETTKYFSIAVSFGS  408 (464)
T ss_pred             HHHHHHHHHHHHHHHhcCCCccEEECCCCCCCccHHHHHHhCCCCceEEEEEeCCH---HHHHHHHHcCCcceEcccCCC
Confidence            66777777777777764321    1221111         1124577888877321   13444555443211111    


Q ss_pred             ------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                            .|.                 ..+.||+++++    |+.+.+++-|+++++
T Consensus       409 ~~SLi~~p~~~sh~~~~~~~~~~~Gi~~~liRlSvGl----E~~~DLi~Dl~~Al~  460 (464)
T PLN02509        409 VKSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFR  460 (464)
T ss_pred             CCceeeCCcccccccCCHHHHHhcCCCCCeEEEEecc----CCHHHHHHHHHHHHc
Confidence                  111                 14789999443    466777777877776

>PRK13580 serine hydroxymethyltransferase; Provisional

Probab=99.78  E-value=9.9e-17  Score=150.71  Aligned_cols=304  Identities=15%  Similarity=0.152  Sum_probs=181.4

Q ss_pred             HHHHHHh-cccCCCeE-EecCChHHHHHHHHHHHHHccccc-----ccC----------------CCCccEEEEeccCCC
Q 017259           25 VFAERLT-SMFGYDMV-LPMNTGAEGVETALKLARKWGYVK-----KKF----------------SIDEAIIVSCCGCFH   81 (374)
Q Consensus        25 ~l~~~l~-~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~-----~G~----------------~~~~~~vi~~~~~yh   81 (374)
                      .++.+.+ +.++.+++ +-..||+.|+.+++.++..+...+     +|.                .-+.|+|+..+...-
T Consensus        98 ~l~~~ra~~lf~a~~anvqp~Sg~~An~~v~~all~~~~~~p~~~~~g~~~~~~~~~~~~~~~~~~~~gd~i~~l~l~~G  177 (493)
T PRK13580         98 WEAAEHAKELFGAEHAYVQPHSGADANLVAFWAILAHKVESPALEKLGAKTVNDLTEEDWEALRAELGNQRLLGMSLDSG  177 (493)
T ss_pred             HHHHHHHHHHhCCCcccccCCCcHHHHHHHHHHHhcccccCcchhccccccccccchhhhhhhhccCCCCEEEeecCCCC
Confidence            3443333 35688865 778899999999999996431001     110                000289999877653


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |+..-.... +.........++..+...- .-|.+++++.+++   .++.+++....+. +...|    +++|.++|+++
T Consensus       178 GHlthg~~~-n~~~~~~~~~~y~vd~~~g-~iD~d~l~~~~~~---~~plvii~g~S~~-~~~~d----l~~i~eia~~~  247 (493)
T PRK13580        178 GHLTHGFRP-NISGKMFHQRSYGVDPDTG-LLDYDEIAALARE---FKPLILVAGYSAY-PRRVN----FAKLREIADEV  247 (493)
T ss_pred             CeeecCccc-chhhheeeeEecccCcccC-ccCHHHHHHHHhh---cCCEEEEeCcccc-CCCcC----HHHHHHHHHHc
Confidence            332221110 0000000000111110000 0278999998884   4556666666555 44667    99999999999


Q ss_pred             CCEEEEecccc-CCcccccCcccccC-CCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCC-CCCHHHHH
Q 017259          162 NILMIADEIQS-GLARSGRMLASDWE-EVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF-GGNPLASA  236 (374)
Q Consensus       162 ~i~li~Dea~~-~~~~~g~~~~~~~~-~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~  236 (374)
                      |.++++|++|+ |+.. +........ ....|++  |++|++.|.  ++|++++++++.+.+... ....+ ++.+...+
T Consensus       248 gA~L~VD~AH~~Glig-g~~~~~~~~~~~~~D~vtgT~hKaL~GP--~GG~I~~~~~l~~~L~~a-~P~i~gg~l~p~iA  323 (493)
T PRK13580        248 GAVLMVDMAHFAGLVA-GKVFTGDEDPVPHADIVTTTTHKTLRGP--RGGLVLAKKEYADAVDKG-CPLVLGGPLPHVMA  323 (493)
T ss_pred             CCEEEEECchhhceec-cccchhhcCCCCCCcEEEeCChhhccCC--CeEEEEecHHHHHHHhhC-CCcccCCCccHHHH
Confidence            99999999998 4311 122110000 1245665  667999654  346788898888877422 12222 22223444


Q ss_pred             HHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          237 VAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       237 aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      ++..++..+...   ++.+++.++.+++++.|++.+..   ++.. ....+++.+.+.+..  .....+.+.|.+.||++
T Consensus       324 A~avAl~e~~~~ef~~y~~~l~~Na~~La~~L~~~G~~---vv~g-gTdshIV~V~lg~~~--~~g~~a~~~L~e~GI~v  397 (493)
T PRK13580        324 AKAVALAEARTPEFQKYAQQVVDNARALAEGFLKRGAR---LVTG-GTDNHLVLIDVTSFG--LTGRQAESALLDAGIVT  397 (493)
T ss_pred             HHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHhcCCC---ccCC-CCCCCEEEEEeCCHH--HHHHHHHHHHHHCCeEE
Confidence            444455555432   47888889999999998877532   2211 124577777775432  12346777899999999


Q ss_pred             ccC-------C---CCEEEEecCC----CCCHHHHHHHHHHHHHHHhccC
Q 017259          314 KPT-------H---DTIVRLTPPL----SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       314 ~~~-------~---~~~lRi~~~~----~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...       +   ...|||+++.    .++++|++++++.|.++++ ..
T Consensus       398 n~i~~Ptvp~g~~~~srLRIg~~A~ttrg~teedi~~iad~l~~~l~-~~  446 (493)
T PRK13580        398 NRNSIPSDPNGAWYTSGIRLGTPALTTLGMGSDEMDEVAELIVKVLS-NT  446 (493)
T ss_pred             ccccCCCCCCCCCCCceEEeccchhhhcCCCHHHHHHHHHHHHHHHH-hh
Confidence            632       2   5679999876    5579999999999999987 54

>PRK07671 cystathionine beta-lyase; Provisional

Probab=99.78  E-value=5.3e-18  Score=158.35  Aligned_cols=218  Identities=13%  Similarity=0.106  Sum_probs=144.4

Q ss_pred             cCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           14 SSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        14 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++.+.++...+|++.|+++.|.+..++++||+.++..++. +     .++|     |+|++.++.|.+...........
T Consensus        43 ~y~r~~~p~~~~Le~~lA~l~g~~~~~~~~sG~aai~~~~~-~-----l~~G-----d~Viv~~~~y~~~~~~~~~~~~~  111 (377)
T PRK07671         43 EYSRTGNPTRAALEELIAVLEGGHAGFAFGSGMAAITAVMM-L-----FSSG-----DHVILTDDVYGGTYRVMTKVLNR  111 (377)
T ss_pred             CcCCCCChHHHHHHHHHHHHhCCCceEEeCCHHHHHHHHHH-H-----hCCC-----CEEEECCCccchHHHHHHHHHhc
Confidence            34457788899999999999988888889999988876553 3     4567     99999999986543322211100


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                               ....+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|+++|+++|+|++|+.
T Consensus       112 ---------~G~~v~~v~~~d~~~l~~ai~---~~tklV~le~P~NPtg~~~d----l~~I~~la~~~g~~lvvD~a~~~  175 (377)
T PRK07671        112 ---------FGIEHTFVDTSNLEEVEEAIR---PNTKAIYVETPTNPLLKITD----IKKISTIAKEKGLLTIVDNTFMT  175 (377)
T ss_pred             ---------CCeEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCCc
Confidence                     012233444458999999887   57899999999999998887    99999999999999999999973


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccCC--ccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGGG--VIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G--~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      . ..+.+.     ....|++  |++|.++|.  . -.|+++. ++++.+.+...........+++.+..++..++.+.. 
T Consensus       176 ~-~~~~p~-----~~g~Divv~S~sK~l~G~~~~-~~G~~v~~~~~l~~~~~~~~~~~g~~~~~~~a~l~~~~l~tl~~-  247 (377)
T PRK07671        176 P-YWQSPI-----SLGADIVLHSATKYLGGHSDV-VAGLVVVNSPELAEDLHFVQNSTGGILGPQDSWLLLRGLKTLGI-  247 (377)
T ss_pred             c-ccCChh-----hhCCeEEEecCcccccCCccc-eeEEEEeCcHHHHHHHHHHHHhhcCCCCHHHHHHHHcCcChHHH-
Confidence            2 112221     2234554  677999852  2 2344554 456766665332222233455555544444443322 


Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q 017259          249 KLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~  267 (374)
                       ..++.+++...+.+.|++
T Consensus       248 -R~~~~~~na~~la~~L~~  265 (377)
T PRK07671        248 -RMEEHETNSRAIAEFLNN  265 (377)
T ss_pred             -HHHHHHHHHHHHHHHHHc
Confidence             355556666677776665

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.78  E-value=4.5e-17  Score=165.79  Aligned_cols=303  Identities=14%  Similarity=0.151  Sum_probs=188.2

Q ss_pred             CcHHHHHHHHhcccCCCeEEecC-ChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           21 DKFPVFAERLTSMFGYDMVLPMN-TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~~~~~-~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      +...++.++|++++|.+.+-+.. +|++|...++.+++.++ ..+| +.++++|++.+.. |+.+.......+-      
T Consensus       542 ~~i~e~q~~l~eltG~d~~sl~~~~ga~ge~agL~a~r~~~-~~~G-~~~r~~vlis~~a-H~snp~sa~~~G~------  612 (954)
T PRK05367        542 ELIDQLEAWLAEITGYDAVSLQPNAGAQGEYAGLLAIRAYH-ESRG-EGHRDVCLIPSSA-HGTNPASAVMAGM------  612 (954)
T ss_pred             HHHHHHHHHHHHHHCCCCEEECccHHHHHHHHHHHHHHHHh-hccC-CCCCCEEEEEchh-hhhhHHHHHHCCC------
Confidence            34567888999999998875555 56666667777777654 4555 2234667777666 6665554433321      


Q ss_pred             CCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-C
Q 017259          100 FGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G  173 (374)
Q Consensus       100 ~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~  173 (374)
                            .++.++.+     |+++|+++++.++.+++++++..+...++...+    +++|+++||++|+++++|.++. +
T Consensus       613 ------~vv~v~~d~~G~iD~~~L~~~i~~~~~~la~V~it~pst~G~~e~~----I~eI~~i~h~~G~~v~VDgA~~~a  682 (954)
T PRK05367        613 ------KVVVVACDENGNIDLDDLRAKAEEHADNLAAIMITYPSTHGVFEET----IREICEIVHEHGGQVYLDGANMNA  682 (954)
T ss_pred             ------EEEEECCCCCCCcCHHHHHHHHhccCCCeEEEEEEcCCCCeeecCC----HHHHHHHHHHcCCEEEEECcChhh
Confidence                  22222221     799999999865456888877665444333356    9999999999999999999996 2


Q ss_pred             CcccccCcccccCCCCCcEEEec--cccc-----CCccchhhheeCHHHHhhcCCCCC--------CCCCCCCHH----H
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGEH--------GSTFGGNPL----A  234 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~-----~G~~~~G~~~~~~~~~~~~~~~~~--------~~~~~~~~~----~  234 (374)
                      +.  +-  . ....+..|+++++  |+++     ||- .+|.+..++.+...+-....        ..+...+.+    .
T Consensus       683 l~--~l--~-~pg~~GADi~~~s~HK~f~~P~G~GGP-g~G~l~vr~~l~p~lpg~~v~~~~~~~~~g~v~ta~~g~al~  756 (954)
T PRK05367        683 QV--GL--A-RPGDIGADVSHLNLHKTFCIPHGGGGP-GVGPIGVKAHLAPFLPGHPVQIAGGETGIGAVSAAPFGSASI  756 (954)
T ss_pred             cc--CC--C-ChhhcCCCEEEecCcccCCCCcCCCCC-ceEEEeecccccccCCCCccCcCCCCCCcCcchhHHHHHHHH
Confidence            21  10  0 1113456888777  8876     233 45667666554433322110        011111222    2


Q ss_pred             HHHHHHHHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEecc--CCCchhHHHHHHHHH
Q 017259          235 SAVAIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDK--TALPVSAYDICLKMK  307 (374)
Q Consensus       235 ~~aa~~al~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~--~~~~~~~~~~~~~l~  307 (374)
                      +..++..+..+..+++.+..+   .+.+++.++|++...    +....+  ...+=+.+++..  ...+....++.++|.
T Consensus       757 ~~~a~~yi~~~G~~Glr~~a~~~~~~A~Yl~~~L~~~~~----~~~~~~~~~~~~e~i~~~~~~~~~~g~~~~di~krL~  832 (954)
T PRK05367        757 LPISWMYIRMMGAEGLRQATEVAILNANYIAKRLKDHYP----VLYTGANGRVAHECILDLRPLKESTGITVDDIAKRLI  832 (954)
T ss_pred             HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhhcC----ccccCCCCCcccceEEEeecccccCCCCHHHHHHHHH
Confidence            233555566666666666666   788888888876421    211100  011112233321  101225789999999


Q ss_pred             HCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          308 ERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       308 ~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      +.|+.....   ..+.+||++....+++|+|+++++|+.+.+ ++.+++
T Consensus       833 d~G~~~~t~~~pv~~~l~i~ptE~~s~~elDr~~~al~~i~~-e~~~~~  880 (954)
T PRK05367        833 DYGFHAPTMSFPVAGTLMVEPTESESKAELDRFCDAMIAIRA-EIDEVE  880 (954)
T ss_pred             HCCCeEeecCCccCCEEEEEeeecCCHHHHHHHHHHHHHHHH-HHHHhh
Confidence            999887553   278999999999999999999999999998 776643

>PRK05994 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.78  E-value=1.1e-17  Score=158.65  Aligned_cols=293  Identities=14%  Similarity=0.174  Sum_probs=182.0

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++...++...+|+++|+++.|.+.+++++||++|+..++..+     .++|     |+|++..+.|++..........
T Consensus        55 ~~y~r~~~p~~~~le~~lA~l~g~~~al~~~SG~~Ai~~al~al-----l~pG-----d~VIv~~~~y~~t~~~~~~~~~  124 (427)
T PRK05994         55 NIYTRITNPTNAVLEERVAALEGGTAALAVASGHAAQFLVFHTL-----LQPG-----DEFIAARKLYGGSINQFGHAFK  124 (427)
T ss_pred             cceECCCCccHHHHHHHHHHHhCCCcEEEEcCHHHHHHHHHHHH-----hCCC-----CEEEEecCcchhHHHHHHHHHH
Confidence            33445667889999999999999999999999999999999887     4567     9999999999765332111100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++|+
T Consensus       125 ~---------~G~~v~~vd~~d~~~l~~ai~---~~tklV~vesp~NptG~v~d----l~~I~~la~~~gi~livD~a~a  188 (427)
T PRK05994        125 S---------FGWQVRWADADDPASFERAIT---PRTKAIFIESIANPGGTVTD----IAAIAEVAHRAGLPLIVDNTLA  188 (427)
T ss_pred             h---------cCcEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCcc
Confidence            0         112344455568999999887   57999999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HH-----------------------HHhhcC-----
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KE-----------------------VMLCIQ-----  220 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~-----------------------~~~~~~-----  220 (374)
                      .. .     ........+|++  |++|.++| |- .+|+++.. ..                       +.+.+.     
T Consensus       189 ~~-~-----~~~pl~~gaDivv~S~tK~lgg~~~-~~gG~v~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (427)
T PRK05994        189 SP-Y-----LIRPIEHGADIVVHSLTKFLGGHGN-SMGGIIVDGGTFDWSKSGKYPMLSEPRPEYHGLVLHETFGNFAFA  261 (427)
T ss_pred             cc-c-----cCCccccCCcEEEEcCccccCCCCC-cEEEEEEeCCccccccccccccccCCcchhhhhhHHHHhhhhhhH
Confidence            21 1     112223456765  66799885 43 45543331 11                       000000     


Q ss_pred             --C---CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH----hCCCceee----------EEE
Q 017259          221 --P---GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVKE----------VRG  281 (374)
Q Consensus       221 --~---~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~~----------~~~  281 (374)
                        .   .........+++.+..++..++.+.  ...++.+++..++.+.|+....    .+|+....          ..+
T Consensus       262 ~~~~~~~~~~~G~~~~~~~A~l~~~~l~tL~--~r~~~~~~~a~~la~~L~~~p~v~~v~yP~l~~~~~~~~~~~~~~~g  339 (427)
T PRK05994        262 IAARVLGLRDLGPAISPFNAFLILTGIETLP--LRMQRHSDNALAVAEWLKGHPKVSWVNYAGLPDDPYHALAQKYSPKG  339 (427)
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHcCcccHH--HHHHHHHHHHHHHHHHHHhCCCccEEECCCCCCCccHHHHHHhcCCC
Confidence              0   0001112345666665655555442  3456667777777777765321    12211110          134


Q ss_pred             EeeeEEEEeccCCCchhHHHHHHHHHHCCeEe----------ccC-----------------CCCEEEEecCCCCCHHHH
Q 017259          282 RGLFNAVEFDKTALPVSAYDICLKMKERGILA----------KPT-----------------HDTIVRLTPPLSISSNEL  334 (374)
Q Consensus       282 ~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v----------~~~-----------------~~~~lRi~~~~~~~~e~i  334 (374)
                      .|.++.|++..+.  ....+|++.|.--.+.+          .|.                 ..+.+|+++++    |+.
T Consensus       340 ~g~~~sf~l~~~~--~~~~~~~~~l~l~~~~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~gi~~~liRlsvGl----E~~  413 (427)
T PRK05994        340 AGAVFTFGLKGGY--EAGVKLVSSLKLFSHLANIGDTRSLVIHPASTTHRQLTDEQKVAAGAGPDVVRLSIGI----EDV  413 (427)
T ss_pred             ceEEEEEEecCCH--HHHHHHHHhCCcceeccccCCCcceeeCCCCCCcccCCHHHHHhcCCCCCcEEEEecc----CCH
Confidence            5888888886321  12344554443222111          111                 14689999553    455


Q ss_pred             HHHHHHHHHHHh
Q 017259          335 QEGSKALHDVLE  346 (374)
Q Consensus       335 ~~~~~~l~~~~~  346 (374)
                      +.+++-|.++++
T Consensus       414 ~dli~dl~~Al~  425 (427)
T PRK05994        414 DDIIADLEQALA  425 (427)
T ss_pred             HHHHHHHHHHHh
Confidence            666777777665

>PRK08114 cystathionine beta-lyase; Provisional

Probab=99.77  E-value=1.6e-17  Score=154.29  Aligned_cols=295  Identities=11%  Similarity=0.013  Sum_probs=188.9

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|-...|+++|+++.|.+.+++++||+.|+..++..+     .++|     |+|++....|.+..........
T Consensus        54 ~~YsR~~nPt~~~le~~la~LEg~~~a~~~~SGmaAi~~~~~~l-----l~~G-----D~Vv~~~~~Yg~t~~l~~~~l~  123 (395)
T PRK08114         54 LFYGRRGTLTHFSLQEAMCELEGGAGCALYPCGAAAVANAILAF-----VEQG-----DHVLMTGTAYEPTQDFCSKILS  123 (395)
T ss_pred             ccccCCCChhHHHHHHHHHHHhCCCeEEEEhHHHHHHHHHHHHH-----cCCC-----CEEEEeCCCcHHHHHHHHHHHH
Confidence            45667789999999999999999999999999999999999877     5667     9999998887665443321111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC--CEEEEecc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEI  170 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~--i~li~Dea  170 (374)
                               .+...+.+++..|.++++++|+   +++++|+++++.|+++.+.+    +++|+++||+++  +++++|.+
T Consensus       124 ---------~~Gi~v~~vd~~d~~~l~~~l~---~~TrlV~~EtpsNp~~~v~D----I~~Ia~ia~~~g~g~~lvVDnT  187 (395)
T PRK08114        124 ---------KLGVTTTWFDPLIGADIAKLIQ---PNTKVVFLESPGSITMEVHD----VPAIVAAVRSVNPDAVIMIDNT  187 (395)
T ss_pred             ---------hcCcEEEEECCCCHHHHHHhcC---CCceEEEEECCCCCCCEeec----HHHHHHHHHHhCCCCEEEEECC
Confidence                     1113455555568899999987   57999999999999999999    999999999984  99999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-C-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      ++.    +  ..+....+..|++  |.+|.++| + . .+|.++.++++.+.+........-..+++.+......++-+.
T Consensus       188 ~a~----p--~~~~pl~~GaDivv~S~tKyl~Ghsdv-~~G~v~~~~~~~~~l~~~~~~~G~~~~p~~a~l~~rgl~TL~  260 (395)
T PRK08114        188 WAA----G--VLFKALDFGIDISIQAGTKYLVGHSDA-MIGTAVANARCWEQLRENSYLMGQMVDADTAYMTSRGLRTLG  260 (395)
T ss_pred             Ccc----c--cccCHHHcCCcEEEEcCcccccCCCcc-eeEEEEcCHHHHHHHHHHHHhccCCCCHHHHHHHHcCCCcHH
Confidence            972    1  1234444556776  55599886 3 4 556666676655544422111222445666555544444332


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      -  ..++..++...+.+.|++-..    .+|+...         ...+.|.++.|+++..........|++.|.--.+.+
T Consensus       261 l--R~~~~~~na~~va~~L~~hp~V~~V~yPgl~~~p~~~~~~~~~~g~gg~~sf~l~~~~~~~~~~~f~~~l~l~~~a~  338 (395)
T PRK08114        261 V--RLRQHEESSLKVAEWLAEHPEVARVNHPALPGCKGHEFWKRDFTGSSGLFSFVLKKKLTDEQLANYLDNFSLFSMAY  338 (395)
T ss_pred             H--HHHHHHHHHHHHHHHHHcCCCEeEEECCCCCCCccHHHHHhhCCCCceEEEEEecCcccHHHHHHHHHhCCcceeec
Confidence            1  245666667777776664321    1221111         123458888888864210113344555443211111


Q ss_pred             ---------c---c-------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ---------K---P-------------THDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ---------~---~-------------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               .   +             ..++.+|++.++    |+.+.+++-|.++++
T Consensus       339 SlGg~~SLi~~~~~~~~~~~~~~~~~~~~~~liRlSvGl----Ed~~DLi~Dl~~Al~  392 (395)
T PRK08114        339 SWGGFESLILANQPEEIAAIRPAGEVDFTGTLIRLHIGL----EDVDDLIADLAAGFA  392 (395)
T ss_pred             ccCCccceeccCCchhhhccCChhHhcCCCCeEEEEecc----CCHHHHHHHHHHHHH
Confidence                     1   0             013689999553    456666777777765

>PRK02769 histidine decarboxylase; Provisional

Probab=99.77  E-value=5e-16  Score=144.54  Aligned_cols=284  Identities=14%  Similarity=0.067  Sum_probs=184.9

Q ss_pred             HHHHHHHHhcccCCC--e--EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           23 FPVFAERLTSMFGYD--M--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~--~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .++..+++++++|.+  +  .++|+|||+++..++...+..   .++     ++|++.+..+ .....+....+......
T Consensus        67 e~~~~~~~a~l~g~~~~~~~G~~TsGgTean~~a~~~ar~~---~~~-----~~ii~s~~~H-~Sv~ka~~~lg~~~~~V  137 (380)
T PRK02769         67 ERDVMNFFAELFKIPFNESWGYITNGGTEGNLYGCYLAREL---FPD-----GTLYYSKDTH-YSVSKIARLLRIKSRVI  137 (380)
T ss_pred             HHHHHHHHHHHhCCCCCCCCEEEecChHHHHHHHHHHHHHh---CCC-----cEEEeCCCce-ehHHHHHHHcCCCCcee
Confidence            335667777777653  3  489999999999998877642   234     6777777664 44433333322221111


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC---CEEEEeccccCCc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN---ILMIADEIQSGLA  175 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~---i~li~Dea~~~~~  175 (374)
                         +...+..    -|+++|+++|++.+.++.+++++...+.+|.+.|    +++|.++|++||   +++++|.+|+++.
T Consensus       138 ---~~~~~g~----id~~~L~~~i~~~~~~t~lvv~t~gtt~tG~idp----i~~I~~i~~~~g~~~~~lHVDaA~gg~~  206 (380)
T PRK02769        138 ---TSLPNGE----IDYDDLISKIKENKNQPPIIFANIGTTMTGAIDN----IKEIQEILKKIGIDDYYIHADAALSGMI  206 (380)
T ss_pred             ---ccCCCCc----CcHHHHHHHHHhCCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCCceEEEEEeccccee
Confidence               1101111    1899999999865556889999999999999999    999999999998   6999999998641


Q ss_pred             ccc--cCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC-----CCCC--CCCHHHHHHHHHHHHH
Q 017259          176 RSG--RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH-----GSTF--GGNPLASAVAIASLDV  244 (374)
Q Consensus       176 ~~g--~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~-----~~~~--~~~~~~~~aa~~al~~  244 (374)
                      ..-  ....++... ..|.+++|  |.+++.. ++|+++.+++..+.+.+...     ..++  +.+..+.++.+++++.
T Consensus       207 ~p~~~~~~~~d~~~-~vDsis~s~HK~~~~P~-g~G~l~~r~~~~~~~~~~~~yl~~~d~t~~GSR~g~~~l~lw~aL~~  284 (380)
T PRK02769        207 LPFVNNPPPFSFAD-GIDSIAISGHKFIGSPM-PCGIVLAKKKYVERISVDVDYIGSRDQTISGSRNGHTALLLWAAIRS  284 (380)
T ss_pred             ecccCccccCCccC-CCCEEEECCcccCCCCC-CcEEEEEehhhhhhcccCccccCCCCCCccCCCCcHHHHHHHHHHHH
Confidence            110  000112112 56888887  8777677 88988888877666532111     1122  3355667778888888


Q ss_pred             Hhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          245 IRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       245 ~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      +..+   +..++..++.+++.++|++.     ++.....+..+.+.|..+      + +++.     +|..+.+. .+.+
T Consensus       285 lg~~G~~~~~~~~~~la~~l~~~L~~~-----g~~~~~~p~~~~v~f~~~------~-~~~~-----~~w~l~~~-~~~~  346 (380)
T PRK02769        285 LGSKGLRQRVQHCLDMAQYAVDRLQAN-----GIPAWRNPNSITVVFPCP------S-ERIW-----KKWHLATS-GNQA  346 (380)
T ss_pred             HCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCEEEcCCCceEEEEcCC------C-HHHH-----hCeeEccc-CCEE
Confidence            7665   44566666777777777653     232223334444544322      1 2222     67777666 4589


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+......+.+.++++++.|...+.
T Consensus       347 hi~~~~~~~~~~~~~f~~dl~~~~~  371 (380)
T PRK02769        347 HIITMPHHNKQQIDSLIDELIFDLK  371 (380)
T ss_pred             EEEECCCCCHHHHHHHHHHHHHHHh
Confidence            9998888899999999999988876

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=99.76  E-value=4.8e-16  Score=155.80  Aligned_cols=310  Identities=16%  Similarity=0.219  Sum_probs=200.6

Q ss_pred             CcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           21 DKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      ....++.++|++++|.+.+ ++.++|++|...++++++.|+ ..+| ..+|++|+++. +-||.+.......+       
T Consensus       530 q~i~elq~~l~eltGmd~~Sl~p~aGA~gE~agL~aiR~y~-~~rg-e~~R~~vlip~-saHgtnPasa~~~G-------  599 (939)
T TIGR00461       530 ELIAQLEKWLCSITGFDAISLQPNSGAQGEYAGLRVIRSYH-ESRG-ENHRNICLIPV-SAHGTNPASAAMAG-------  599 (939)
T ss_pred             HHHHHHHHHHHHHHCCCCcccCCchHHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEc-cccCcCHHHHHHCC-------
Confidence            4566799999999999865 777778877777888888765 4444 22345555554 45887766544433       


Q ss_pred             CCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-
Q 017259          100 FGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-  173 (374)
Q Consensus       100 ~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-  173 (374)
                           ..+..++.+     |+++|++++++++++++++++..+++ .|.+.++   +++|+++||++|.++++|.++.. 
T Consensus       600 -----~~Vv~V~~d~~G~iDle~L~~~i~~~~~~taaV~iT~pst-~G~~e~~---I~eI~~iah~~G~~v~VDgAq~~a  670 (939)
T TIGR00461       600 -----MQVVPVNCDQDGNIDLVDLKNKAEQHGDELAAVMVTYPST-HGVFEPT---IQHACDIVHSFGGQVYLDGANMNA  670 (939)
T ss_pred             -----CEEEEeccCCCCCcCHHHHHHHHhhcCCceEEEEEEeCCc-Cceeccc---HHHHHHHHHHcCCEEEEEecChhh
Confidence                 123333332     89999999987667899999988776 4555433   99999999999999999999862 


Q ss_pred             CcccccCcccccCCCCCcEEEec--cccc-----CCccchhhheeCHHHHhhcCCCCC----------------CCCCCC
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALG-----GGVIPVSAVLADKEVMLCIQPGEH----------------GSTFGG  230 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~-----~G~~~~G~~~~~~~~~~~~~~~~~----------------~~~~~~  230 (374)
                      ...     ....-.+..|++.+|  |+|+     ||- .+|.+.+++++...+-....                ...+.+
T Consensus       671 l~~-----l~~Pg~~GaDi~~~s~HKtf~~P~G~GGP-g~G~i~vr~~L~~~lPg~~v~~t~d~~greq~Iga~s~~~~g  744 (939)
T TIGR00461       671 QVG-----LTSPGDLGADVCHLNLHKTFCIPHGGGGP-GMGPIGVKSHLIPFLPKHDVVSMITGIGGSKSIGSVSAAPYG  744 (939)
T ss_pred             CCC-----CCCccccCCCEEEecCCccCCCCCCCCCC-CeEEEEEhhhchhhcCCCcccccccCCCCccccccccccccC
Confidence            211     111123567888776  8777     555 66778887765443321100                011234


Q ss_pred             CHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEeccC--CCchhHHHHH
Q 017259          231 NPLASAVAIASLDVIRDEKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKT--ALPVSAYDIC  303 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~~--~~~~~~~~~~  303 (374)
                      +...+..++..++.+..+++.   +....+.+++.++|++.   + .......  ...+=+.++++..  ..+....++.
T Consensus       745 ~a~~~l~a~~yi~~lG~~GL~~~a~~ailnAnYl~~rL~~~---~-~~l~~~~~~~~~hEfv~~~~~~~~~~g~~~~dIa  820 (939)
T TIGR00461       745 SASILPISWMYIKMMGNEGLPKASVVAILNANYMATRLKDH---Y-PILFVGTLKHVAHECILDLRPLKAKTGIEAIDVA  820 (939)
T ss_pred             cHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcc---C-cccccCCCCceeEEEEEeccchhhhcCCCHHHHH
Confidence            555556677777887776554   33445677888888762   1 1222110  1112233444321  1123688999


Q ss_pred             HHHHHCCeEeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC--CCCCCC
Q 017259          304 LKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK--PKPADA  360 (374)
Q Consensus       304 ~~l~~~Gi~v~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~--~~~~~~  360 (374)
                      ++|++.|++.....   .+.+.|.|....+++|+|++++++.++.+ ++..++.  +++.++
T Consensus       821 krL~d~G~hapt~~~pv~g~lmiepTE~eskeelD~f~~al~~I~~-e~~~~~~g~~~~~~~  881 (939)
T TIGR00461       821 KRLQDYGFHAPTLSFPVPGTLMVEPTESESLEELDRFCDAMIAIKE-EINALVAGQPKGQDN  881 (939)
T ss_pred             HHHHhCCeeccccCCccCCeEEEEeeccCCHHHHHHHHHHHHHHHH-HHHHhhcCCCCCCcc
Confidence            99999998764321   35888888899999999999999999988 7766433  444443

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>TIGR03235 DNA_S_dndA cysteine desulfurase DndA

Probab=99.76  E-value=4.5e-17  Score=151.72  Aligned_cols=259  Identities=10%  Similarity=0.061  Sum_probs=161.7

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +..++++++++++++.  +++++++|++++++.++..+...     +..++++.|++....++........+... +.  
T Consensus        42 ~~~~~~r~~la~~~g~~~~~v~~~~g~t~a~~~~l~~l~~~-----~~~~g~~~vi~~~~~~~s~~~~~~~~~~~-G~--  113 (353)
T TIGR03235        42 KAVERARKQVAEALGADTEEVIFTSGATESNNLAILGLARA-----GEQKGKKHIITSAIEHPAVLEPIRALERN-GF--  113 (353)
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEeCCHHHHHHHHHHHHHHh-----cccCCCCeeeEcccccHHHHHHHHHHHhc-CC--
Confidence            3467789999998865  47999999999999999887532     11123366777665543322222111110 11  


Q ss_pred             cCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                             .+..++.     .|+++++++++   +++++++++++++++|.+.+    +++|.++|+++|+++|+|++|+ 
T Consensus       114 -------~v~~v~~~~~~~~d~~~l~~~l~---~~~~lv~~~~~~n~tG~~~~----~~~I~~l~~~~~~~~ivD~a~~-  178 (353)
T TIGR03235       114 -------TVTYLPVDESGRIDVDELADAIR---PDTLLVSIMHVNNETGSIQP----IREIAEVLEAHEAFFHVDAAQV-  178 (353)
T ss_pred             -------EEEEEccCCCCcCCHHHHHHhCC---CCCEEEEEEcccCCceeccC----HHHHHHHHHHcCCEEEEEchhh-
Confidence                   1111221     27899998886   46899999999999999998    9999999999999999999987 


Q ss_pred             CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhh--cCCCCC-------CCCCCCCHHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLC--IQPGEH-------GSTFGGNPLASAVAIASL  242 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~--~~~~~~-------~~~~~~~~~~~~aa~~al  242 (374)
                      ++..    .++......|++++|  |.++ .. ++|+++.+++....  +.+...       ......+.....+..+++
T Consensus       179 ~g~~----~~~~~~~~~D~~~~s~~K~~g-p~-g~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~~~~~~al~~al  252 (353)
T TIGR03235       179 VGKI----TVDLSADRIDLISCSGHKIYG-PK-GIGALVIRKRGKPKAPLKPIMFGGGQERGLRPGTLPVHLIVGMGEAA  252 (353)
T ss_pred             cCCc----cccccccCCCEEEeehhhcCC-CC-ceEEEEEccCcccccccCceeeCCCCcCccccCCCChHHHHHHHHHH
Confidence            2211    122223456877666  9754 33 56788887764322  222111       112345666677777777


Q ss_pred             HHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259          243 DVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT  316 (374)
Q Consensus       243 ~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  316 (374)
                      +.+..  ++..++++++.+++++.|++.+..   +... ....+.++.+.++..    +..++.+.|.+ +|.++++
T Consensus       253 ~~~~~~~~~~~~~~~~l~~~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~~~~----~~~~v~~~L~~-~i~v~~g  321 (353)
T TIGR03235       253 EIARRNAQAWEVKLRAMRNQLRDALQTLGVK---LNGDPAETIPHILNFSIDGV----NSEALIVNLRA-DAAVSTG  321 (353)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHhccCCeE---EeCCcccccCCEEEEEeCCc----CHHHHHHHHhC-CeEEEch
Confidence            77643  255677777777777777552111   1111 112244555555432    57788888864 8888765

This model describes DndA, a protein related to IscS and part of a larger family of cysteine desulfurases. It is encoded, typically, divergently from a conserved, sparsely distributed operon for sulfur modification of DNA. This modification system is designated dnd, after the phenotype of DNA degradation during electrophoresis. The system is sporadically distributed in bacteria, much like some restriction enzyme operons. DndB is described as a putative ATPase.

>PF01053 Cys_Met_Meta_PP: Cys/Met metabolism PLP-dependent enzyme; InterPro: IPR000277 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.76  E-value=3.4e-17  Score=151.86  Aligned_cols=289  Identities=20%  Similarity=0.185  Sum_probs=175.9

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.+|-...+++.|+++.+.+.++.++||..|+..++..+     .+.|     |+|++....|++..........
T Consensus        47 ~~Y~R~gnPt~~~le~~la~Le~g~~a~~~~SGmaAi~~~l~~l-----l~~G-----d~iv~~~~~Y~~t~~~~~~~l~  116 (386)
T PF01053_consen   47 YIYSRYGNPTVRALEQRLAALEGGEDALLFSSGMAAISAALLAL-----LKPG-----DHIVASDDLYGGTYRLLEELLP  116 (386)
T ss_dssp             CSBTTTC-HHHHHHHHHHHHHHT-SEEEEESSHHHHHHHHHHHH-----S-TT-----BEEEEESSSSHHHHHHHHHCHH
T ss_pred             cceeccccccHHHHHHHHHHhhcccceeeccchHHHHHHHHHhh-----cccC-----CceEecCCccCcchhhhhhhhc
Confidence            45566779999999999999999999999999999999999888     5667     9999999999775444332221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC-CEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~-i~li~Dea~  171 (374)
                      .         ....+.+++..|+++++++++   +++++|++|++.|++..+.+    +++|+++|+++| +++++|+++
T Consensus       117 ~---------~gv~v~~~d~~d~~~l~~~l~---~~t~~v~~EspsNP~l~v~D----l~~i~~~a~~~g~~~~vVDnT~  180 (386)
T PF01053_consen  117 R---------FGVEVTFVDPTDLEALEAALR---PNTKLVFLESPSNPTLEVPD----LEAIAKLAKEHGDILVVVDNTF  180 (386)
T ss_dssp             H---------TTSEEEEESTTSHHHHHHHHC---TTEEEEEEESSBTTTTB-------HHHHHHHHHHTTT-EEEEECTT
T ss_pred             c---------cCcEEEEeCchhHHHHHhhcc---ccceEEEEEcCCCccccccc----HHHHHHHHHHhCCceEEeeccc
Confidence            1         113455666678999999998   58999999999999998888    999999999998 999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC--HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD--KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +..      +....+....|++  |.+|-++| +=+-+|.++.+  +++.+.++..........++..+......++-+.
T Consensus       181 atp------~~~~pL~~GaDivv~S~TKyl~Ghsdv~~G~vv~~~~~~~~~~l~~~~~~~G~~~~p~da~ll~rgl~Tl~  254 (386)
T PF01053_consen  181 ATP------YNQNPLELGADIVVHSATKYLSGHSDVMGGAVVVNGSSELYDRLREFRRLLGATLSPFDAWLLLRGLRTLP  254 (386)
T ss_dssp             THT------TTC-GGGGT-SEEEEETTTTTTTSSSE-EEEEEESSHHHHHHHHHHHHHHHT-B--HHHHHHHHHHHTTHH
T ss_pred             cce------eeeccCcCCceEEEeeccccccCCcceeeEEEEECchhhhhhhhcchhhhcCccchHHHHHHHhcCCCcHH
Confidence            622      1222233345655  77798885 32134556654  3666655432111112234444444444443221


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                        -..++..++..++.+.|+.-    | .+..+                  .+.|.++.|++++..  .....|.+.|.-
T Consensus       255 --~R~~~~~~nA~~lA~~L~~h----p-~V~~V~yPgl~s~p~~~~~~~~~~g~ggl~sf~l~~~~--~~~~~f~~~l~l  325 (386)
T PF01053_consen  255 --LRMERQNENAEALAEFLEEH----P-KVKRVYYPGLPSHPQHELAKRQMSGGGGLLSFELKGGE--EAARRFLDALKL  325 (386)
T ss_dssp             --HHHHHHHHHHHHHHHHHHTS----T-TEEEEEETTSTTSTTHHHHHHHCSSCTSEEEEEESSHH--HHHHHHHHH-SS
T ss_pred             --HHHHHHHHHHHHHHHHHHhC----C-CCCeEEEcccccccceeeeeecccccCceeEEEeccch--hhhHhHHhhhhh
Confidence              12445555565665555443    2 22221                  134568888887531  123445554431


Q ss_pred             C--Ce--------EeccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          309 R--GI--------LAKPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~--Gi--------~v~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      -  |.        +..|.                 .++.+|++.+    -|+.+.+++.|+++++
T Consensus       326 ~~~~~SlGg~~SLi~~p~~~~h~~~~~e~~~~~Gi~~~liRlSvG----lEd~~dLi~Dl~~AL~  386 (386)
T PF01053_consen  326 FSIAPSLGGVESLISHPASTSHRSLSPEERAEAGISDGLIRLSVG----LEDPDDLIADLEQALE  386 (386)
T ss_dssp             SEESSS-SSSS-EEEETTCTTTTTSCHHHHHHTTS-TTEEEEE------SS-HHHHHHHHHHHHH
T ss_pred             HhhhhhcCCcccccccccchhhccCChhhhhccCCCCCeeEEEec----cCCHHHHHHHHHHhcC
Confidence            1  11        11111                 1578999944    3566777777777764

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent enzymes involved in the metabolism of cysteine, homocysteine and methionine have been shown [, ] to be evolutionary related. These enzymes are proteins of about 400 amino-acid residues. The pyridoxal-P group is attached to a lysine residue located in the central section of these enzymes.; GO: 0030170 pyridoxal phosphate binding, 0006520 cellular amino acid metabolic process; PDB: 1PFF_A 2NMP_A 3ELP_B 3COG_C 1CS1_A 1E5E_B 3RI6_A 1E5F_A 2FQ6_B 1CL2_B ....

>KOG2862 consensus Alanine-glyoxylate aminotransferase AGT1 [General function prediction only]

Probab=99.76  E-value=3.5e-16  Score=134.25  Aligned_cols=291  Identities=15%  Similarity=0.110  Sum_probs=200.7

Q ss_pred             cHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           22 KFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        22 ~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .++++.+-+...+   +....++..+|+.+.+.|+..+     ..+|     |++++..-+-.|....-.  ..    + 
T Consensus        51 Im~~v~egikyVFkT~n~~tf~isgsGh~g~E~al~N~-----lePg-----d~vLv~~~G~wg~ra~D~--~~----r-  113 (385)
T KOG2862|consen   51 IMDEVLEGIKYVFKTANAQTFVISGSGHSGWEAALVNL-----LEPG-----DNVLVVSTGTWGQRAADC--AR----R-  113 (385)
T ss_pred             HHHHHHHHHHHHhccCCCceEEEecCCcchHHHHHHhh-----cCCC-----CeEEEEEechHHHHHHHH--HH----h-
Confidence            3455555555544   3335688889999999999988     5677     888877655444322211  11    1 


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                          +...+..++.+     .++.+++++.+|  +++++++....++||.+.+   .++.+.++||+|+.++++|.+-+ 
T Consensus       114 ----~ga~V~~v~~~~G~~~~le~i~~~lsqh--~p~~vfv~hgdsSTgV~q~---~~~~~g~lc~k~~~lllVD~VaS-  183 (385)
T KOG2862|consen  114 ----YGAEVDVVEADIGQAVPLEEITEKLSQH--KPKAVFVTHGDSSTGVLQD---LLAISGELCHKHEALLLVDTVAS-  183 (385)
T ss_pred             ----hCceeeEEecCcccCccHHHHHHHHHhc--CCceEEEEecCccccccch---HHHHHHHHhhcCCeEEEEechhh-
Confidence                11223333322     689999999986  7889999999999998765   36777899999999999999987 


Q ss_pred             CcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC-----------------------CCCCCC
Q 017259          174 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH-----------------------GSTFGG  230 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~  230 (374)
                      +  .|..|.++.++++.-....-|++++.- +++.+..+++..++++..+.                       .+.+.+
T Consensus       184 l--ggt~F~mDewgVDvaytgSQKaL~aP~-GLsiisfS~ka~~~~~~rK~~~~~~yFd~~~~~~~wgc~~e~~~yhhT~  260 (385)
T KOG2862|consen  184 L--GGTEFEMDEWGVDVAYTGSQKALGAPA-GLSIISFSDKALEAIRDRKTKPVSFYFDILRLGNFWGCDGEPRAYHHTP  260 (385)
T ss_pred             c--CCccceehhhcccEEEecchhhcCCCC-CcceeecCHHHHHHHhhccCCceEEEEeHHhhcchhccCCcccccccCC
Confidence            3  355677777766432334449999654 55667788888888764421                       122355


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.....+.+++|+.+-++   +..++.++..++++..|++++-.+ -.+...........+..+...   +..+++.+++
T Consensus       261 pv~lly~Lr~AL~~I~eeGL~~~~~rH~e~s~~l~~~l~~~GLq~-fv~~e~~rlptvttv~vp~gv---Dw~dVv~~~~  336 (385)
T KOG2862|consen  261 PVQLLYSLRAALALIAEEGLENSWRRHREMSKWLKLSLEALGLQL-FVVDEELRLPTVTTVKVPYGV---DWKDVVAYAM  336 (385)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-eecChhhccCcceeeecCCCC---CHHHHHHHHH
Confidence            677777888888887665   567788889999999999876442 133333444555566666555   8899999999


Q ss_pred             HC-CeEecc----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ER-GILAKP----THDTIVRLTP-PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~-Gi~v~~----~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+ ++.+..    ..+..+||.. +...+.+.++..++.|+.++.
T Consensus       337 ~~~~vei~gglg~~~gKv~RIGl~gcna~~e~i~~v~~ll~~alq  381 (385)
T KOG2862|consen  337 SHYVVEIGGGLGPTVGKVFRIGLLGCNANVEYIDNVVELLKLALQ  381 (385)
T ss_pred             HhcCEEeccccCCCcccEEEEEEeeccCCcHHHHHHHHHHHHHHh
Confidence            88 555543    3478999964 344577889999999998886

>PRK07812 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.76  E-value=3e-17  Score=155.11  Aligned_cols=164  Identities=18%  Similarity=0.139  Sum_probs=117.6

Q ss_pred             CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++++.++...+|+++|+++.|.+..++++||+.|+..++..+     .++|     |+|++....|.+............
T Consensus        63 Ysr~~~p~~~~Le~~lA~l~g~~~av~~sSG~aAi~~al~al-----l~~G-----d~Vv~~~~~y~~t~~~~~~~l~~~  132 (436)
T PRK07812         63 YTRIMNPTQDVVEQRIAALEGGVAALLLASGQAAETFAILNL-----AGAG-----DHIVSSPRLYGGTYNLFHYTLPKL  132 (436)
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCeEEEEccHHHHHHHHHHHH-----hCCC-----CEEEEeCCcchHHHHHHHHHhhcC
Confidence            344568889999999999999999999999999999999877     4567     999999888755332211111000


Q ss_pred             cccccCCCCCCCceecc-CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      +         ..+..++ ..|+++++++++   +++++|+++++.|++|.+.+    +++|.++|++||+++|+|++++.
T Consensus       133 G---------i~v~~vdd~~d~e~l~~ai~---~~tklV~ie~~sNp~G~v~D----l~~I~~la~~~gi~liVD~t~a~  196 (436)
T PRK07812        133 G---------IEVSFVEDPDDLDAWRAAVR---PNTKAFFAETISNPQIDVLD----IPGVAEVAHEAGVPLIVDNTIAT  196 (436)
T ss_pred             e---------EEEEEECCCCCHHHHHHhCC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCcc
Confidence            1         1222222 237888888776   67999999999999999999    99999999999999999999862


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccC-Cccchhhhee
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA  211 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~  211 (374)
                      . ..     ........|++  |++|.++| |- -+|+++.
T Consensus       197 ~-~~-----~~pl~~GaDivv~S~tK~lgg~G~-~i~G~vv  230 (436)
T PRK07812        197 P-YL-----IRPLEHGADIVVHSATKYLGGHGT-AIAGVIV  230 (436)
T ss_pred             c-cc-----CCchhcCCCEEEEecccccCCCCC-eEEEEEE
Confidence            1 11     11122345655  77799985 43 3455443

>COG2873 MET17 O-acetylhomoserine sulfhydrylase [Amino acid transport and metabolism]

Probab=99.75  E-value=4.7e-17  Score=143.14  Aligned_cols=168  Identities=18%  Similarity=0.174  Sum_probs=132.5

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-.+.|+++++.+.|--..+.++||..|+..|+..+     ...|     |+|+..+.-|-|........-
T Consensus        53 G~iYsRi~NPT~~vlE~RiAaLEGG~aa~a~aSG~AA~~~ai~~l-----a~aG-----D~iVss~~LYGGT~~lf~~tl  122 (426)
T COG2873          53 GNIYTRIMNPTTDVLEERIAALEGGVAALAVASGQAAITYAILNL-----AGAG-----DNIVSSSKLYGGTYNLFSHTL  122 (426)
T ss_pred             CceeeeccCchHHHHHHHHHHhhcchhhhhhccchHHHHHHHHHh-----ccCC-----CeeEeeccccCchHHHHHHHH
Confidence            445556778999999999999987778899999999999999999     5567     999999888866543332221


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .         -+..++.++.-+|++.++++|+   ++||+|++|+..||.+.+.+    +++|.++||+||+++|+|.+.
T Consensus       123 ~---------~~Gi~v~fvd~~d~~~~~~aI~---~nTkavf~EtigNP~~~v~D----ie~ia~iAh~~gvpliVDNT~  186 (426)
T COG2873         123 K---------RLGIEVRFVDPDDPENFEAAID---ENTKAVFAETIGNPGLDVLD----IEAIAEIAHRHGVPLIVDNTF  186 (426)
T ss_pred             H---------hcCcEEEEeCCCCHHHHHHHhC---cccceEEEEeccCCCccccC----HHHHHHHHHHcCCcEEEecCC
Confidence            1         1224567777778999999998   78999999999999999998    999999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD  212 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~  212 (374)
                      +..      +.+...+...|++  |.+|.++| |- .+|.++..
T Consensus       187 atp------yl~rP~~hGADIVvHS~TK~igGhGt-~iGG~iVD  223 (426)
T COG2873         187 ATP------YLCRPIEHGADIVVHSATKYIGGHGT-AIGGVIVD  223 (426)
T ss_pred             Ccc------eecchhhcCCCEEEEeecccccCCcc-ccceEEEe
Confidence            631      2333334456766  88899997 77 77876654

>KOG1357 consensus Serine palmitoyltransferase [Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=3.6e-17  Score=146.78  Aligned_cols=306  Identities=19%  Similarity=0.225  Sum_probs=207.7

Q ss_pred             hHHHHHHHhccc--cCc---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL--SSR---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+.+++...  .++   .+....+.++++..+++.|.+..+..+-|-..+...+..+     +.+|     .-|+..
T Consensus       158 ~~~~~~~~kygl~~css~~e~G~~~~hkelE~l~A~f~g~e~a~vF~mGf~TNs~~~p~l-----~~~g-----sLIiSD  227 (519)
T KOG1357|consen  158 EASLKSFDKYGLSRCSSRHEAGTTEEHKELEELVARFLGVEDAIVFSMGFATNSMNIPSL-----LGKG-----SLIISD  227 (519)
T ss_pred             hHHHHHHHHhcccccccchhcccHHHHHHHHHHHHHhcCCcceEEEeccccccccCccee-----ecCC-----cceeec
Confidence            466777776444  233   2678889999999999999998877777766666666655     5555     555555


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---------c-CCcEEEEEEccccCCCCcccC
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---------S-GDQIAGFLFEPIQGEAGVIIP  146 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---------~-~~~~~~vi~~~~~~~~g~~~~  146 (374)
                      +-. |+......-+++            .......+||+++||+.|++         + +.+.-.++++.+.++.|.++.
T Consensus       228 elN-HaSi~~GaRLSg------------AtiRVfkHNdm~~LEr~Lrd~I~~gqP~Thrp~kki~iivegiysmEg~iv~  294 (519)
T KOG1357|consen  228 ELN-HASLITGARLSG------------ATTRVFRHNDMQGLERLLRDAIVYGQPKTHRPWKKILICVEGIYSMEGTIVD  294 (519)
T ss_pred             ccc-chheeccccccC------------ceEEEEecCCHHHHHHHHHHHHhcCCCCcCCcchheeeeeccceeccCeecc
Confidence            544 666555444443            44667788999999999985         1 223457788889999999998


Q ss_pred             ChhHHHHHHHHHHhcCCEEEEecccc-C-CcccccCcccccCCCCC---cEE--EecccccCCccchhhheeCHHHHhhc
Q 017259          147 PDGYLKAVRDLCSKYNILMIADEIQS-G-LARSGRMLASDWEEVRP---DMV--ILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       147 ~~~~l~~l~~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~~~---d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                          +.++..+++++..+++.||+|+ | .+..|.. ....++.+|   |+.  +|.|+++++   .|++.+++++++.+
T Consensus       295 ----Lp~vvalkkkykayl~lDEAHSiGA~g~tGrg-vce~~g~d~~dvDImMGtftKSfga~---GGyiagsk~lid~l  366 (519)
T KOG1357|consen  295 ----LPEVVALKKKYKAYLYLDEAHSIGAMGATGRG-VCEYFGVDPEDVDIMMGTFTKSFGAA---GGYIAGSKELIDYL  366 (519)
T ss_pred             ----cHHHHHhhccccEEEEeeccccccccCCCCcc-eeeccCCCchhheeecceehhhcccc---cceecCcHHHHhhh
Confidence                9999999999999999999999 3 3455543 445555544   333  788988832   24688999999999


Q ss_pred             CCCCCCCCC--CCCHHHHHHHHHHHHHHhhh-------cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          220 QPGEHGSTF--GGNPLASAVAIASLDVIRDE-------KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       220 ~~~~~~~~~--~~~~~~~~aa~~al~~~~~~-------~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      +.......|  +.+++.++....+++.+..+       ...+++..+..+++..++..+     ++..-...+..+-+.+
T Consensus       367 rt~s~~~~yat~~sppvaqq~~ssl~~i~G~dgt~~g~~k~~~l~~ns~yfr~~l~~~g-----fivyG~~dSpVvplll  441 (519)
T KOG1357|consen  367 RTPSPSALYATSLSPPVAQQILTSVKHIMGEDGTNRGRQKIERLAENSRYFRWELQKMG-----FIVYGNNDSPVVPLLL  441 (519)
T ss_pred             ccCCCceeecccCChHHHHHHHHHHHhhcCCCcccHHHHHHHHHHhhhHHHHHhhhcCc-----EEEecCCCCCcceeee
Confidence            865554444  44666666667777776431       345677777888877777653     2221122222222222


Q ss_pred             ccCCCchhHHHHHHHHHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          291 DKTALPVSAYDICLKMKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      -...   ....+.+.|+++++.+.-.+       ....|++.+..++.|+++++++.+.++=+
T Consensus       442 ~~~~---k~~~f~r~~l~~nigvVvvgfPatpl~e~r~R~c~Sa~ht~e~ld~~l~~i~~~g~  501 (519)
T KOG1357|consen  442 YGPA---KIVAFSREMLERNIGVVVVGFPATPLLESRARFCLSASHTKEDLDRALEVIDRVGD  501 (519)
T ss_pred             cCcc---cccHHHHHHHhcCceEEEEeCCCchHHHhHHHhhhcccccHHHHHHHHHHHhhhch
Confidence            1111   35678889998865553221       34569998899999999999999877654

>PRK03080 phosphoserine aminotransferase; Provisional

Probab=99.75  E-value=1.2e-16  Score=149.84  Aligned_cols=285  Identities=14%  Similarity=0.063  Sum_probs=178.5

Q ss_pred             CCcHHHHHHHHhcccCC---CeEEecC-ChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGY---DMVLPMN-TGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~---~~~~~~~-~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ...+++..+.|+++++.   ++++|++ |||.+++.++..+     .+++    ++.+++ .+ .|+...........  
T Consensus        47 ~~~~~~~r~~l~~l~~~~~~~~v~~~~gs~T~~~~~~~~~l-----~~~~----~~~vi~-~g-~f~~~~~~~~~~~~--  113 (378)
T PRK03080         47 KALLKRVIEGTRELLSLPEGYEVGIVPGSDTGAWEMALWSL-----LGAR----RVDHLA-WE-SFGSKWATDVVKQL--  113 (378)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEECCchHHHHHHHHHhc-----CCCC----cceEEE-eC-HHHHHHHHHHHhhc--
Confidence            56677888888888874   2688775 9999999999877     2222    144443 44 45553222110000  


Q ss_pred             ccccCCCCCCCceecc--CC---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVD--FG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~--~~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                         +..    .+..++  ++   |+++    ++    .++.|.+.+..+.+|.+.|    +++|++  ++||+++++|.+
T Consensus       114 ---g~~----~v~~~~~~~g~~~d~~~----i~----~~~~V~~~h~~t~tG~~~p----i~~I~~--~~~g~~~vVDa~  172 (378)
T PRK03080        114 ---KLE----DPRVLEADYGSLPDLSA----VD----FDRDVVFTWNGTTTGVRVP----VARWIG--ADREGLTICDAT  172 (378)
T ss_pred             ---CCC----CceEeccCCCCCCCHhh----cC----CCCCEEEEecCCccceecc----chhhcc--ccCCCeEEEecc
Confidence               000    111111  11   3443    32    2456788888999999999    999999  889999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC----------------------CC
Q 017259          171 QSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH----------------------GS  226 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~----------------------~~  226 (374)
                      ++ ++  ..++..+  +  .|++.+|  |++++.. ++|+++.++++.+.+.+...                      ..
T Consensus       173 qs-~G--~~pidv~--~--iD~~~~s~~K~l~~P~-G~g~l~v~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (378)
T PRK03080        173 SA-AF--ALPLDWS--K--LDVYTFSWQKVLGGEG-GHGMAILSPRAVERLESYTPARPIPKFFRLTKGGKAIENSFKGQ  244 (378)
T ss_pred             cc-cc--cCCCCHH--H--CcEEEEehhhhCCCCC-ceEEEEECHHHHHhhhcccCCCCCchhheeccchHHhhhhhcCC
Confidence            98 32  1222222  2  3777665  9998776 78999999988877654210                      11


Q ss_pred             C-CCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHH
Q 017259          227 T-FGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       227 ~-~~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~  300 (374)
                      + +.++..+..++.++++.+.+.    .+.++.+++.+++++.|+++.... .... .....+.++.|.+++.. .....
T Consensus       245 t~~tp~i~~i~~l~~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~~-~~~~~~~~~s~~i~~~~~~~~~-~~~~~  322 (378)
T PRK03080        245 TINTPSMLTVEDYLDQLDWANSIGGLDALIARTAANASVLYDWAEKTPWAT-PLVADPATRSNTSVTLDFVDAQ-AAVDA  322 (378)
T ss_pred             cccCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCcc-cccCCccccCccEEEEEcCCch-HHHHH
Confidence            1 233555556667788887653    345666667777777776553210 0111 11122346666665410 00234


Q ss_pred             HHHHHHHHCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++...|.++|++++.+.    .+.+|++++..++++|+++++++|+++++ ++
T Consensus       323 ~~~~~l~~~~i~v~~g~~~~~~~~vRis~~~~~t~~di~~l~~al~~~~~-~~  374 (378)
T PRK03080        323 AAVAKLLRENGAVDIEPYRDAPNGLRIWCGPTVEPADVEALTPWLDWAFE-RL  374 (378)
T ss_pred             HHHHHHHHcCCeeccccccCCCCcEEEecCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            57778888898886532    47899999999999999999999999887 54

>KOG1549 consensus Cysteine desulfurase NFS1 [Amino acid transport and metabolism]

Probab=99.74  E-value=6.6e-16  Score=140.01  Aligned_cols=298  Identities=13%  Similarity=0.163  Sum_probs=174.7

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      .++-++.++++.+++  +|+||+|+|++++++++.....    .+ +....+||.....|......+..+-.. ++...+
T Consensus        87 ~E~aR~~VAklInAd~~dIiFts~ATEs~Nlvl~~v~~~----~~-~~~~k~iitl~~eH~~v~~s~~~l~~~-g~~Vt~  160 (428)
T KOG1549|consen   87 VEAAREQVAKLINADPSDIVFTSGATESNNLVLKGVARF----FG-DKTKKHIITLQTEHPCVLDSCRALQEE-GLEVTY  160 (428)
T ss_pred             HHHHHHHHHHHhCCCCCcEEEeCCchHHHHHHHHHhhcc----cc-ccccceEEEecccCcchhHHHHHHHhc-CeEEEE
Confidence            566788888887554  6999999999999999888421    22 101137777776654444444443322 222222


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM  180 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~  180 (374)
                      .|...+..    .|++.+++.|+   ++|+++.+..++|..|.+.|    +++|.++|+++++.+++|.+|+ .   |. 
T Consensus       161 lpv~~~~~----~d~~~~~~~i~---~~T~lv~I~~Vnn~~gv~~P----v~EI~~icr~~~v~v~~DaAQa-v---G~-  224 (428)
T KOG1549|consen  161 LPVEDSGL----VDISKLREAIR---SKTRLVSIMHVNNEIGVLQP----VKEIVKICREEGVQVHVDAAQA-V---GK-  224 (428)
T ss_pred             eccCcccc----ccHHHHHHhcC---CCceEEEEEecccCcccccc----HHHHHHHhCcCCcEEEeehhhh-c---CC-
Confidence            22211111    17889999998   79999999999999999999    9999999999999999999997 2   22 


Q ss_pred             cccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcC--CCCCCC----CC---CCCHHHHHHHHHHHHHHhhh-
Q 017259          181 LASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQ--PGEHGS----TF---GGNPLASAVAIASLDVIRDE-  248 (374)
Q Consensus       181 ~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~--~~~~~~----~~---~~~~~~~~aa~~al~~~~~~-  248 (374)
                      ...+..++++|+.++|  |.++..  ++|+++.++. ...++  +...+.    .+   ....+.+...-++.+....+ 
T Consensus       225 i~vDV~eln~D~~s~s~HK~ygp~--~iGaLYvr~~-~~~~~~~p~~~GGgq~r~~rsGT~~~~~~~~~gsA~e~~~~~~  301 (428)
T KOG1549|consen  225 IPVDVQELNADFLSISAHKIYGPP--GIGALYVRRK-RPRLRVEPPLSGGGQERGLRSGTVATPLAVGLGSAAEFVNKEM  301 (428)
T ss_pred             ccccHHHcCchheeeecccccCCC--cceEEEEccC-CCcccccCcccCCccccccccCCcCchhhhhhHHHHHHHHhhc
Confidence            2445567788988877  888742  2688888752 12222  111110    11   22333444444445554332 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCce-e--eEEEEeeeEEEEec--cCCCchhHHHHHHH-----------------
Q 017259          249 -KLAERSAHLGEELRQHLFKIQQQFPNYV-K--EVRGRGLFNAVEFD--KTALPVSAYDICLK-----------------  305 (374)
Q Consensus       249 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~~~~~g~~~~~~~~--~~~~~~~~~~~~~~-----------------  305 (374)
                       ....++++...++...+...   .+++. .  .....+....+.++  ..-.  ...+.-..                 
T Consensus       302 ~~~~~~~~~~~~~ll~~i~~~---~~~~~~~G~~~~~~~~~~~~~~~~~~g~~--~~~~~~~~~l~s~~a~~~~~~epsy  376 (428)
T KOG1549|consen  302 AYDEAIIKRLSEKLLMGIGQS---LPEVTLNGSGKSRYPGLVSLSFPYVEGES--LLMDLKDVALSSGSACTSASLEPSY  376 (428)
T ss_pred             chhHHHHHHHHHHHHHHHhhh---CchhhccCCcccccccceeeecccccCcc--hhhhhhhhhhcccchhhcCCCCcch
Confidence             22344444444444443221   11111 0  11112333333333  1000  11111111                 


Q ss_pred             -HHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          306 -MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       306 -l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                       |+..|+.... ....+||+.+..++++|++++++.+++... .+..+
T Consensus       377 ~l~~~G~~~~~-~~~~iRis~G~y~t~~di~~~~~~i~~~v~-~~~~~  422 (428)
T KOG1549|consen  377 VLRAIGVDEDL-AHSSIRISIGRYTTEEDIDYLVDAIKKLVS-LLREM  422 (428)
T ss_pred             hhhhcCcchhh-hcceeEEeeeeeCcHHHHHHHHHHHHHHHH-hcccc
Confidence             2222221111 257899999999999999999999999988 55443

>cd00615 Orn_deC_like Ornithine decarboxylase family

Probab=99.74  E-value=7.5e-17  Score=146.10  Aligned_cols=228  Identities=11%  Similarity=0.030  Sum_probs=140.9

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+.....++++.+++++|.+++++ ++|+++++..++..+     .++|     |+|++.+++|.+........+..+.+
T Consensus        56 ~~~g~i~~~~~~~A~~~ga~~~~~~~~Gst~a~~~~l~al-----~~~g-----d~Vlv~~~~h~s~~~~~~~~g~~~~~  125 (294)
T cd00615          56 DPTGPIKEAQELAARAFGAKHTFFLVNGTSSSNKAVILAV-----CGPG-----DKILIDRNCHKSVINGLVLSGAVPVY  125 (294)
T ss_pred             CCChHHHHHHHHHHHHhCCCCEEEEcCcHHHHHHHHHHHc-----CCCC-----CEEEEeCCchHHHHHHHHHCCCEEEE
Confidence            446668889999999999887766 888889999888877     5677     99999999975544333322222222


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-Cc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LA  175 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~~  175 (374)
                      ...  .........-..|+++++++++++ ++++++++.++ +++|.+.+    +++|.++|+++|+++|+||+|+. +.
T Consensus       126 v~~--~~~~~~~~~~~i~~~~l~~~l~~~-~~~k~v~l~~p-~~~G~~~d----l~~I~~~~~~~g~~livDeA~~~~~~  197 (294)
T cd00615         126 LKP--ERNPYYGIAGGIPPETFKKALIEH-PDAKAAVITNP-TYYGICYN----LRKIVEEAHHRGLPVLVDEAHGAHFR  197 (294)
T ss_pred             ecC--ccCcccCcCCCCCHHHHHHHHHhC-CCceEEEEECC-CCCCEecC----HHHHHHHHHhcCCeEEEECcchhhhc
Confidence            110  000000000112799999999764 35777777654 56888887    99999999999999999999974 22


Q ss_pred             ccccCcccccCCCCCcEE--EecccccCCccchhh-heeCHHHH--hhcCCC-CCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          176 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSA-VLADKEVM--LCIQPG-EHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~-~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      ..+. +.........|++  |++|+++ |+ +.|+ +..+++..  ..+... ....+.+++.+.+++..++++.+..  
T Consensus       198 ~~~~-~~~~~~~~~~div~~S~hK~l~-g~-~~~~~l~~~~~~~~~~~~~~~~~~~~ttsps~~~~asl~~a~~~~~~~g  274 (294)
T cd00615         198 FHPI-LPSSAAMAGADIVVQSTHKTLP-AL-TQGSMIHVKGDLVNPDRVNEALNLHQSTSPSYLILASLDVARAMMALEG  274 (294)
T ss_pred             cCcc-cCcchhhcCCcEEEEchhcccc-hH-hHHHHHHhCCCcCCHHHHHHHHHHHCCCCcHHHHHHHHHHHHHHHHHHh
Confidence            2221 1112222345655  6669874 44 5444 44443311  112111 1223456677777777777776543  


Q ss_pred             hcHHHHHHHHHHHHHHHHH
Q 017259          248 EKLAERSAHLGEELRQHLF  266 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~  266 (374)
                      +++.++..++.+++++++.
T Consensus       275 ~~~~~~~~~~~~~~r~~l~  293 (294)
T cd00615         275 KELVEELIELALYARQEIN  293 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHh
Confidence            2455666666666666553

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major groups in this CD corresponds to ornithine decarboxylase (ODC), arginine decarboxylase (ADC) and lysine decarboxylase (LDC). ODC is a dodecamer composed of six homodimers and catalyzes the decarboxylation of tryptophan. ADC catalyzes the decarboxylation of arginine and LDC catalyzes the decarboxylation of lysine. Members of this family are widely found in all three forms of life.

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=99.73  E-value=2.9e-16  Score=146.32  Aligned_cols=309  Identities=17%  Similarity=0.212  Sum_probs=206.6

Q ss_pred             CCcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .++..+|++.|++++|++.+ +..+||.++-+..++.++.|. ..+|  .++++|+.++-+.||.+.+...+.+-     
T Consensus       581 ~~lf~~Le~~Lc~iTG~D~~s~QPNsGA~GEYaGL~~IRaY~-~~kg--e~hRnvClIPvSAHGTNPASA~Magm-----  652 (1001)
T KOG2040|consen  581 QQLFTELEKDLCEITGFDSFSLQPNSGAQGEYAGLRVIRAYL-ESKG--EGHRNVCLIPVSAHGTNPASAAMAGM-----  652 (1001)
T ss_pred             HHHHHHHHHHhheeecccceeecCCCCcccchhhHHHHHHHH-Hhcc--CCcceeEEEeecccCCChhhHHhcCC-----
Confidence            45677899999999999986 777889999999999999887 5555  45688888899999999888877652     


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc---
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI---  170 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea---  170 (374)
                             +++.+.++     |+.+|+++.++|.++.+++++.-+. ..|...+   -++.++++.++||-.++.|.+   
T Consensus       653 -------kvvpV~~~~~G~id~~dLk~kaekh~~~Laa~MvTYPS-T~GvfE~---~i~d~cd~iHehGGQVYlDGANMN  721 (1001)
T KOG2040|consen  653 -------KVVPVGCDANGNIDMVDLKAKAEKHKDNLAALMVTYPS-THGVFEE---GIDDICDIIHEHGGQVYLDGANMN  721 (1001)
T ss_pred             -------EEEEeeccCCCCccHHHHHHHHHHhhhhhheeEEeccc-ccccccc---cHHHHHHHHHhcCCEEEecCCCcc
Confidence                   22222222     7889999999888899998886543 3344333   399999999999999999964   


Q ss_pred             -ccCCcccccCcccccCCCCCcEE------EecccccCCccchhh-heeCHHHHhhcCCC-----------CCCCCC---
Q 017259          171 -QSGLARSGRMLASDWEEVRPDMV------ILGKALGGGVIPVSA-VLADKEVMLCIQPG-----------EHGSTF---  228 (374)
Q Consensus       171 -~~~~~~~g~~~~~~~~~~~~d~~------s~sK~~~~G~~~~G~-~~~~~~~~~~~~~~-----------~~~~~~---  228 (374)
                       +.|+.+.|..        ..|+.      +|+-..|||- |.+. +...+.+...+-..           ....+.   
T Consensus       722 AqVGlc~pGd~--------GaDV~HLNLHKTFcIPHGGGG-Pg~gPIgVK~HLapfLP~HpVvs~~~~~~~~~~gsVsaa  792 (1001)
T KOG2040|consen  722 AQVGLCRPGDI--------GADVCHLNLHKTFCIPHGGGG-PGMGPIGVKKHLAPFLPSHPVVSPGRPEDTSPVGSVSAA  792 (1001)
T ss_pred             ceecccCCccc--------cccceeecccceeeecCCCCC-CCCCccchhhhccccCCCCCccCCCCCCCCCCccceecc
Confidence             5567655543        22333      6666666544 4434 43344443332111           000111   


Q ss_pred             -CCCHHHHHHHHHHHHHHhhhcHHHHH---HHHHHHHHHHHHHHHHhCCCceee-EE-EEeeeEEEEeccCCC--chhHH
Q 017259          229 -GGNPLASAVAIASLDVIRDEKLAERS---AHLGEELRQHLFKIQQQFPNYVKE-VR-GRGLFNAVEFDKTAL--PVSAY  300 (374)
Q Consensus       229 -~~~~~~~~aa~~al~~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~~-~~-~~g~~~~~~~~~~~~--~~~~~  300 (374)
                       .++..-+...++-++.+...++.+..   .-+.+++.++|+.-..    ++.. .. -..+=+.+++...+.  +.++.
T Consensus       793 P~Gsa~ILpISwaYikmMG~~GL~~as~~AiLNaNYMakRLe~hYk----il~~~~~~~vaHEFIlD~r~fK~~agieav  868 (1001)
T KOG2040|consen  793 PWGSALILPISWAYIKMMGSGGLKDASKIAILNANYMAKRLESHYK----ILFRGENGLVAHEFILDLRPFKKTAGIEAV  868 (1001)
T ss_pred             CCCcceeehhHHHHHHHhcccccchhhHHHhhhhHHHHHHHhhccc----eeEecCCcceeeeeeeechhhccccCCcHH
Confidence             22444455678888888776544333   3367788777765421    2221 11 112223344433322  46788


Q ss_pred             HHHHHHHHCCeEeccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC--CCCCCCC
Q 017259          301 DICLKMKERGILAKPTH---DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK--PKPADAP  361 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~--~~~~~~~  361 (374)
                      +++++|++.|+......   .++++|-|....+.+|+|++++++..+.+ ++..++.  .++..+|
T Consensus       869 DvAKRL~DYgFHaPTmswPV~gtLMIEPTESE~k~ElDRfcdAliSIre-EI~~ie~G~~dk~~n~  933 (1001)
T KOG2040|consen  869 DVAKRLMDYGFHAPTMSWPVAGTLMIEPTESEDKAELDRFCDALISIRE-EIAQIEEGRQDKRNNP  933 (1001)
T ss_pred             HHHHHHHhccCCCCccccccCCceEeccCccccHHHHHHHHHHHHHHHH-HHHHHHccCCCcccCc
Confidence            99999999999876543   68999999999999999999999998888 7665555  3443443

>TIGR03531 selenium_SpcS O-phosphoseryl-tRNA(Sec) selenium transferase

Probab=99.72  E-value=1.1e-15  Score=143.44  Aligned_cols=301  Identities=13%  Similarity=0.116  Sum_probs=176.1

Q ss_pred             cHHHHHHHHhcccCCC---eEEecCChH-HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Cccc
Q 017259           22 KFPVFAERLTSMFGYD---MVLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEA   96 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~---~~~~~~~gs-~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~   96 (374)
                      +..++++.+++++|.+   .+++++++| .++..++.+++..  ..+|     +.||++.-+ |..+..+..+.+ .+.+
T Consensus       106 l~~~~e~~~~~~~G~~~~~~a~~v~~~Tg~al~laL~alr~~--~~~g-----d~VI~p~~t-h~S~~kAi~~~G~~pv~  177 (444)
T TIGR03531       106 LTNKLVKDFLKLLGLRSIKSAFVVPLATGMSLSLCLSALRHK--RPKA-----KYVIWPRID-QKSCIKAISTAGFEPRV  177 (444)
T ss_pred             HHHHHHHHHHHHcCCCCCCEEEEECCHHHHHHHHHHHHcCCc--CCCC-----CEEEEECcC-hHHHHHHHHHcCCeEEE
Confidence            3456788888888887   799999999 6787777766421  1134     888888877 444444444433 2222


Q ss_pred             cccCCCCCCCceeccCC-CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           97 IRGFGPLLPGHLKVDFG-DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ....      ...-.+. |+++|+++|++.. ..+.+++.++..+.+|...+    +++|.++|++||+++|+|++|+..
T Consensus       178 Vd~~------~d~~~~~iD~e~Le~aIt~~~~kai~~Vv~Tp~t~~~g~~dd----L~eIa~la~k~gI~lIvDaAyg~~  247 (444)
T TIGR03531       178 IETV------LDGDELTTDVEDIERAIEEIGPDNILCVLSTTSCFAPRSPDD----IEEIAKICANYDIPHIVNNAYGLQ  247 (444)
T ss_pred             eeee------ecCcCCCcCHHHHHHHHHhccCCCEEEEEEcCCcCCCcchhC----HHHHHHHHHHcCCEEEEECcCcCc
Confidence            2100      0001122 8999999998543 33444444444333344455    999999999999999999999832


Q ss_pred             cccccCcccccCCC-CCcEE--EecccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--h
Q 017259          175 ARSGRMLASDWEEV-RPDMV--ILGKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--E  248 (374)
Q Consensus       175 ~~~g~~~~~~~~~~-~~d~~--s~sK~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~  248 (374)
                      ...-..+....... ..|++  +++|.+.... ..|.++. ++++.+.+.....+..  .+.+++.+...++....+  +
T Consensus       248 ~~~~~~~~~~g~~~Grad~vv~s~hK~l~~pg-~Gg~I~~~d~el~~~i~~~y~g~~--~~s~~~~~~~~ll~~G~~g~~  324 (444)
T TIGR03531       248 SNKYMELINKAIKVGRVDAVVSSTDKNFMVPV-GGAIIYSFDENFIQEISKSYPGRA--SASPSLDVLITLLSLGSKGYL  324 (444)
T ss_pred             ChhhhhhhhccccccCCCeEEEeCccCCCCCC-CEEEEEECCHHHHHHHHHhccCCC--CChHHHHHHHHHHHhCHHHHH
Confidence            11000000011111 23555  4459877422 2333445 6677777764322211  233455555544443222  2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe----EeccCC-------
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI----LAKPTH-------  317 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi----~v~~~~-------  317 (374)
                      ++.++..++.+++.+.|+++..+....+..++.+..-+.+.+.... +.+..++...|..++|    +|.++.       
T Consensus       325 ~li~~~~~~a~~l~~~L~~l~~~~~~~~~~~~~n~is~~~~~~~~~-~~~~~~~g~~l~~~~v~g~r~v~~~~~~~~~~~  403 (444)
T TIGR03531       325 ELLKERKEMYKYLKELLQKLAERHGERLLDTPENPISSAMTLSTLK-GKDPTMLGSMLYSRRVTGPRVVTNGDSKTVGGC  403 (444)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhCcEeecCCCCceeEEEeccccc-ccCHHHHHHHHHhCCCCCceeecCCCceEECCE
Confidence            6677788888999999988876653344445444444555554211 1257788888888755    222321       


Q ss_pred             -------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          318 -------------DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       318 -------------~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                                   -.++-++.....+.+|+|.++++|+++
T Consensus       404 ~~~~~~~~~~~~~~~y~~~~~~~g~~~~~~~~~~~~l~~~  443 (444)
T TIGR03531       404 EFKGYGSHTSNYPCPYITAAAAIGMTKEDVDTFVSRLEKS  443 (444)
T ss_pred             EeecccccccCCCchhHHHHHHhCCcHHHHHHHHHHHhhc
Confidence                         124444545678999999999999875

In the archaea and eukaryotes, the conversion of the mischarged serine to selenocysteine (Sec) on its tRNA is accomplished in two steps. This enzyme, O-phosphoseryl-tRNA(Sec) selenium transferase, acts second, after a phosphophorylation step catalyzed by a homolog of the bacterial SelA protein.

>PLN03226 serine hydroxymethyltransferase; Provisional

Probab=99.72  E-value=6.2e-15  Score=140.97  Aligned_cols=290  Identities=14%  Similarity=0.053  Sum_probs=175.2

Q ss_pred             CCcHHHHHH----HHhcccCCC-eEEe----cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC-----CCccc
Q 017259           20 NDKFPVFAE----RLTSMFGYD-MVLP----MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-----HGRTL   85 (374)
Q Consensus        20 ~~~~~~l~~----~l~~~~~~~-~~~~----~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y-----hg~~~   85 (374)
                      ....+++++    +..+.++.+ ..+.    .+||+.|+..++.++     .++|     |+|+..+-..     |+...
T Consensus        75 ~~~~d~lE~~~~~~~~~~f~~~~~~~~~nv~~~SG~~AN~av~~aL-----~~pg-----D~Il~~d~~~gGhl~H~~~~  144 (475)
T PLN03226         75 NEYIDQIETLCQKRALEAFRLDPEKWGVNVQPLSGSPANFAVYTAL-----LQPH-----DRIMGLDLPHGGHLSHGYQT  144 (475)
T ss_pred             ChhHHHHHHHHHHHHHHHhCCCcceeEEecCcCchHHHHHHHHHHh-----CCCC-----CEEEECCCCcCcchhhhhhh
Confidence            345555654    233344444 3332    489999999999998     5677     9999855321     22211


Q ss_pred             ccccccCCccccccCCCCCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           86 AAISMSCDNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      ....++....+        .......++      |+++|++.+.++  +++.+++.  .+..+...+    +++|.++|+
T Consensus       145 ~g~~~s~~~~~--------~~~~~y~~~~~~g~iD~d~Le~~l~~~--~pklIv~~--~S~~s~~~D----~a~i~~ia~  208 (475)
T PLN03226        145 DGKKISATSIY--------FESMPYRLDESTGLIDYDKLEKKAMLF--RPKLIIAG--ASAYPRDWD----YARMRKIAD  208 (475)
T ss_pred             cccccccceEE--------EEeeeeeecCCCCCcCHHHHHHHHhhc--CCeEEEEe--cCcCCCccC----HHHHHHHHH
Confidence            11111111100        001111223      899999988764  35555552  233466666    999999999


Q ss_pred             hcCCEEEEecccc-CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHh--------------hcCCC
Q 017259          160 KYNILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML--------------CIQPG  222 (374)
Q Consensus       160 ~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~--------------~~~~~  222 (374)
                      ++|.++++|++|+ |+.  +........+ ..|++  |++|++.|..  .|++++++++.+              .+...
T Consensus       209 ~~ga~LlvD~AH~~Gli--~~~~~~~p~~-~~Div~~t~hK~L~GP~--Gg~I~~~~~~~~~~~~g~~~~~d~~~~i~~a  283 (475)
T PLN03226        209 KVGALLMCDMAHISGLV--AAQEAASPFE-YCDVVTTTTHKSLRGPR--GGMIFFRKGPKPPKGQGEGAVYDYEDKINFA  283 (475)
T ss_pred             HcCCEEEEEchhhhCcc--cCCCCCCCCC-CCeEEEecCcccccCCC--ceEEEEchhhcccccCCCccHHHHHHHhccc
Confidence            9999999999998 432  2111101111 45666  5669997654  366777765331              11111


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchh
Q 017259          223 -EHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS  298 (374)
Q Consensus       223 -~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  298 (374)
                       ......++++...++..++++.+...   .+.+++.++.+++.+.|++.+..   ++.. ....+++++++...  +.+
T Consensus       284 ~~~~~~g~p~~~~iaal~aAl~~i~~~~~~~~~~~~~~na~~L~~~L~~~G~~---l~~~-~t~~hi~lv~~~~~--gi~  357 (475)
T PLN03226        284 VFPGLQGGPHNHTIAALAVALKQAMTPEFKAYQKQVKANAAALANRLMSKGYK---LVTG-GTDNHLVLWDLRPL--GLT  357 (475)
T ss_pred             cCCccCCCchHHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHHHHHhCCCE---EEcC-CCCCCEEEEEccCC--CCC
Confidence             11122244566677777888887653   46788888888888888774321   2211 11246666666321  125


Q ss_pred             HHHHHHHHHHCCeEeccC---------CCCEEEEe----cCCCCCHHHHHHHHHHHHHHHh
Q 017259          299 AYDICLKMKERGILAKPT---------HDTIVRLT----PPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       299 ~~~~~~~l~~~Gi~v~~~---------~~~~lRi~----~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..++.+.|.+.||.+...         .+..+|+.    .+...+++|++++.+.|.++++
T Consensus       358 ~~~~~~~L~~~~I~~nk~~~p~~~~~~~~~giRiGt~~lt~~g~~~~d~~~ia~~i~~~~~  418 (475)
T PLN03226        358 GSRVEKVLDLAHITLNKNAVPGDSSALVPGGVRIGTPAMTSRGLVEKDFEKVAEFLHRAVT  418 (475)
T ss_pred             HHHHHHHHHHCCCEECCCCCCCCcccCCCCCcccCcHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            678888899999998643         35678983    3467789999999999999987

>TIGR01366 serC_3 phosphoserine aminotransferase, putative

Probab=99.72  E-value=2.5e-16  Score=146.41  Aligned_cols=284  Identities=13%  Similarity=0.122  Sum_probs=175.7

Q ss_pred             CCcHHHHHHHHhcccCC--C-eEEec-CChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGY--D-MVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~-~~~~~-~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ...+++..+.++++++.  + +++|+ +|||.+++.++..+.     . +     +.+++..+.| |....-.+-..   
T Consensus        40 ~~~~~~~r~~l~~l~~~~~~~~v~f~~gs~T~a~~~~~~~l~-----~-~-----~~l~i~~G~~-~~~~~~~a~~~---  104 (361)
T TIGR01366        40 KNLVGRVREGLAELFSLPDGYEVILGNGGATAFWDAATFGLI-----E-K-----KSLHLSFGEF-SSKFAKAVKLA---  104 (361)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEECCchhHHHHHHHHhcc-----c-c-----cccEEecCHH-HHHHHHHHHhh---
Confidence            56677889999998875  2 57775 779999999997773     1 1     3334444444 32211111110   


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                            |+...+..++.+.-+.++..+.   +++++|.+.+..+.+|.+.|    +++|   ++++|+++++|.+++ ++
T Consensus       105 ------~~~~~~~~~~~~~~~~~~~~~~---~~~~lV~~~h~et~tG~~~p----i~~I---~~~~g~~~iVDavqs-~g  167 (361)
T TIGR01366       105 ------PWLGEPIIVTADPGSAPEPQAD---PGVDVIAWAHNETSTGVAVP----VRRP---EGSDDALVVIDATSG-AG  167 (361)
T ss_pred             ------hccCCceEEecCCCCCCCCccC---CCCCEEEEcccCCccceecc----cccc---cccCCCeEEEEcCcc-cc
Confidence                  0000111112111112222222   58999999999999999998    8777   589999999999998 31


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC---------------------CCCCCCCH
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH---------------------GSTFGGNP  232 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  232 (374)
                        +.+...+  .  .|++.+|  |++++.- .+++++.++++.+++.+...                     ...+.++.
T Consensus       168 --~~~idv~--~--~D~~~~s~~K~lg~~~-Gl~~~~~s~~~~~~~~~~~~~~~~~p~~~d~~~~~~~~~~~~t~~tp~i  240 (361)
T TIGR01366       168 --GLPVDIA--E--TDVYYFAPQKNFASDG-GLWLAIMSPAALERIEAIAASGRWVPEFLSLPTAVDNSLKNQTYNTPAI  240 (361)
T ss_pred             --CCCCCHH--H--CCEEEEEchhhcCCCC-ceEEEEECHHHHhhhhcccCCCCCCchhhhHHHHHhccccCCCCCCchH
Confidence              1222222  1  5777666  9888432 33445667777666542211                     11234455


Q ss_pred             HHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          233 LASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       233 ~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ....+..++++.+.+.    ...++.+++.+++++.+++..... .+.... ........+.++++.   +..++.+.|.
T Consensus       241 ~~i~~l~~al~~l~~~gg~e~~~~r~~~l~~~l~~~l~~~~~~~-~~~~~~~~~s~~v~~v~~~~g~---~~~~v~~~L~  316 (361)
T TIGR01366       241 ATLALLAEQIDWMNGNGGLDWAVARTADSSSRLYSWAQERPYAT-PFVTDPGKRSQVVGTIDFVDDI---DAATVAKILR  316 (361)
T ss_pred             HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcc-cCCCChhhcccceEEEECCCcc---CHHHHHHHHH
Confidence            5555777888877654    345666777777877777765211 111111 111222233334433   6788999999


Q ss_pred             HCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||.+.++.    .+.+||+....+|.+|+++++++|+++++
T Consensus       317 ~~gI~i~~~~~~l~~~~vRis~~~~~t~~di~~l~~al~~~~~  359 (361)
T TIGR01366       317 ANGIVDTEPYRKLGRNQLRVAMFPAIDPDDVEALTECVDWVVE  359 (361)
T ss_pred             HCCCeeccCccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHHh
Confidence            9999997652    56899999999999999999999999887

This model represents a putative variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in Mycobacterium tuberculosis and related high-GC Gram-positive bacteria.

>TIGR01788 Glu-decarb-GAD glutamate decarboxylase

Probab=99.72  E-value=3.8e-15  Score=140.54  Aligned_cols=307  Identities=13%  Similarity=0.025  Sum_probs=181.8

Q ss_pred             CcHHHHHHHHhcccCCC----eEEe--cCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCccccccccc
Q 017259           21 DKFPVFAERLTSMFGYD----MVLP--MNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~----~~~~--~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      ...++..+++++++|.+    ++++  |+|||||++.|+..++.....   ..|....+..|++.+-. |.....+....
T Consensus        80 ~le~~~~~~la~llg~~~~~~~~~g~~TsGgTEAn~~al~~ar~~~~~~~~~~g~~~~~~~ii~s~~~-H~sv~ka~~~l  158 (431)
T TIGR01788        80 EIENRCVNMLADLWHAPAKDAEAVGTSTIGSSEAIMLGGLAMKWRWRKRMEAAGKPTDKPNLVMGSNV-QVCWEKFARYF  158 (431)
T ss_pred             HHHHHHHHHHHHHhCCCCCCCCCeEEEechHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEEcCcc-hHHHHHHHHHc
Confidence            34445777778777654    4655  899999999999887632100   11211111345555544 54443333222


Q ss_pred             CCccccccCCCCCCC-ceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc------CCE
Q 017259           92 CDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY------NIL  164 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~------~i~  164 (374)
                      +-   .....|...+ ..    -|+++|+++|+   +++.+|++...++.+|.+.|    +++|.++|+++      |++
T Consensus       159 g~---~v~~i~~d~~~~~----vd~~~L~~~i~---~~t~lV~~t~g~t~tG~idp----i~~I~~i~~~~~~~~~~~~~  224 (431)
T TIGR01788       159 DV---ELREVPMDPGRYV----IDPEQVVEAVD---ENTIGVVCILGTTYTGEYED----VKALNDALDEYNAKTGWDIP  224 (431)
T ss_pred             Cc---eeEEEecCCCcee----eCHHHHHHHHh---hCCeEEEEEeCCCCCcccCC----HHHHHHHHHHHHhhhCCCce
Confidence            21   1001111110 01    17899999997   46888888889999999999    99999999999      999


Q ss_pred             EEEeccccCCcc---cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH--HHhhcCCC--CC-----CCCCCC
Q 017259          165 MIADEIQSGLAR---SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQPG--EH-----GSTFGG  230 (374)
Q Consensus       165 li~Dea~~~~~~---~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~--~~~~~~~~--~~-----~~~~~~  230 (374)
                      +++|.+|+|+..   .+.. ..+......|.+++|  |.+.+.. ++|+++.+++  +.+.+...  ..     ..+...
T Consensus       225 ~HvDaaq~g~~~p~~~~~~-~~~~~~~~~DSis~s~HK~~~~P~-g~G~l~~r~~~~l~~~~~~~~~yl~~~~~~~t~~~  302 (431)
T TIGR01788       225 IHVDAASGGFIAPFVYPDL-EWDFRLPRVKSINVSGHKYGLVYP-GVGWVIWRDEEALPEELIFHVNYLGGDEPTFTLNF  302 (431)
T ss_pred             EEEecccHHHHHHHhCCCc-hhhcCCCCceEEEECchhccCCCC-CcEEEEEeChHHcchhheecccccCCCCCCcceec
Confidence            999999996321   1211 111112245677777  8765666 7788776653  32332110  01     012222


Q ss_pred             CH--HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCC-CchhHHHHH
Q 017259          231 NP--LASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTA-LPVSAYDIC  303 (374)
Q Consensus       231 ~~--~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~-~~~~~~~~~  303 (374)
                      +.  ......+..++.+..+   ++.++..++.+++.++|++..    .+....+ +...++.|.++... ...+..++.
T Consensus       303 sR~g~~al~~w~~l~~lG~~G~~~i~~~~~~la~~l~~~L~~~~----~~el~~~~~~~~iV~Fr~~~~~~~~~~~~~l~  378 (431)
T TIGR01788       303 SRPANQVIAQYYNFLRLGREGYRKIMQNSLDVARYLAEEIAKLG----PFEIISDGSGIPLVAFKLKDDADPGYTLYDLS  378 (431)
T ss_pred             CchHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHhCC----CEEEeeCCCCceEEEEEeCCCCCCCcCHHHHH
Confidence            22  2233344444444443   455666667777777776542    2221122 34566666665310 012567899


Q ss_pred             HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.|.++|+.+...       +...+|++.....+.+.++++++.|++++. .+
T Consensus       379 ~~L~~~G~~~~~~~~p~~~~~~~~lR~~~~~~~~~~~~~~~~~~~~~~~~-~~  430 (431)
T TIGR01788       379 HRLRERGWIVPAYTLPKNAEDIVVMRIVVREGFSRDLAELLIEDIEAALA-YL  430 (431)
T ss_pred             HHHHHCCCcccCCCCCCccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH-hh
Confidence            9999999875221       235789987667789999999999999887 54

This model represents the pyridoxal phosphate-dependent glutamate (alpha) decarboxylase found in bacteria (low and hi-GC gram positive, proteobacteria and cyanobacteria), plants, fungi and at least one archaon (Methanosarcina). The product of the enzyme is gamma-aminobutyrate (GABA).

>TIGR01364 serC_1 phosphoserine aminotransferase

Probab=99.70  E-value=1.4e-15  Score=140.56  Aligned_cols=284  Identities=12%  Similarity=0.077  Sum_probs=181.7

Q ss_pred             CcHHHHHHHHhcccCC-C--eEEecCC-hHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMFGY-D--MVLPMNT-GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~-~--~~~~~~~-gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ..++++.++|+++++. +  ++++++| ||.|+++++..+     ..+|     +++++...++.|....-..-.. ...
T Consensus        37 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgT~a~ea~~~nl-----~~~~-----~~~l~i~~G~fg~r~~~~a~~~-g~~  105 (349)
T TIGR01364        37 AVANEAESDLRELLNIPDNYEVLFLQGGATGQFAAVPLNL-----LAEG-----KVADYIVTGAWSKKAAKEAKKY-GVV  105 (349)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc-----CCCC-----CeEEEEECCHHHHHHHHHHHHh-CCc
Confidence            4567788888888874 2  5766655 999999999888     4456     7777777766665443222110 000


Q ss_pred             cccCCCCCCCceeccCC---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           97 IRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ....    .+ ...++.   ++++++  ++   +++++|.+.+..+++|...+         ++++.+++++++|.+++ 
T Consensus       106 ~~~~----~~-~~~~~~~~~~~~~~~--~~---~~~~~v~~th~ETstGv~~~---------~l~~~~~~l~iVDavss-  165 (349)
T TIGR01364       106 NVVA----SG-KEGNYTKIPDPSTWE--IS---EDAAYVHYCANETIHGVEFR---------ELPDVKNAPLVADMSSN-  165 (349)
T ss_pred             EEEe----cc-ccCCCCCCCCHHhcC--CC---CCCCEEEEcCCCCcccEecc---------eecccCCCeEEEEcccc-
Confidence            0000    00 001122   344433  22   47889999998888998653         67777899999999998 


Q ss_pred             CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----------CCC-CCCCCHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----------HGS-TFGGNPLASAVAI  239 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~aa~  239 (374)
                      ++  +.+...+.  +  |++.+|  |+++ .. ++|+++.++++.+.+.+..           ... .++++.....+..
T Consensus       166 ~g--~~~id~~~--~--d~~~~ssqK~lg-P~-Glg~l~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~al~  237 (349)
T TIGR01364       166 IL--SRPIDVSK--F--GLIYAGAQKNIG-PA-GLTVVIVRKDLLGRASRITPSMLNYKIHAENDSMYNTPPTFAIYVSG  237 (349)
T ss_pred             cc--CccCCHHH--c--cEEEEecccccC-CC-ceEEEEECHHHHhhcccCCCCcchHHHHHhcCCCCCCCcHHHHHHHH
Confidence            21  22333332  2  355554  9986 44 5788899998887664421           012 2366788888888


Q ss_pred             HHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          240 ASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       240 ~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ++++++.++    ++.++.+.+.+++++.|+++..............+..+.|.+++..   ...++.+.+.++|+.+.+
T Consensus       238 ~al~~l~~~gG~e~i~~r~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~v~sf~~~~~~---~~~~~~~~~~~~Gi~~~~  314 (349)
T TIGR01364       238 LVFKWLKEQGGVKAIEKRNQAKAQLLYDTIDNSNGFYRNPVDPRNRSRMNVVFTLGNEE---LEKRFLKEAEERGLVSLK  314 (349)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCCeeccCCCHHHcCCeEEEEecCChh---HhHHHHHHHHHCCCcccC
Confidence            999988654    4556666777777777776631100011101122355666665431   346787889999996666


Q ss_pred             CC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 TH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 ~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.  .+.+|+++...++.+|+++++++|+++.+
T Consensus       315 ~~~~~g~vRvS~~~~nt~edid~l~~al~~~~~  347 (349)
T TIGR01364       315 GHRSVGGMRASIYNAMPLEGVQALVDFMKEFQK  347 (349)
T ss_pred             CccccCeeEEECcCCCCHHHHHHHHHHHHHHHH
Confidence            64  47899999999999999999999998776

This model represents the common form of the phosphoserine aminotransferase SerC. The phosphoserine aminotransferase of the archaeon Methanosarcina barkeri and putative phosphoserine aminotransferase of Mycobacterium tuberculosis are represented by separate models. All are members of the class V aminotransferases (pfam00266).

>PLN03032 serine decarboxylase; Provisional

Probab=99.70  E-value=1.2e-14  Score=134.44  Aligned_cols=275  Identities=14%  Similarity=0.076  Sum_probs=174.0

Q ss_pred             HHHHHHHHhcccCCC--eE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           23 FPVFAERLTSMFGYD--MV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .+++.+++++++|.+  ++  +||+|||+|+..++..++...   ++     ..|++.. .-|.....+....+..    
T Consensus        68 e~~v~~~ia~llg~~~~~~~G~fTsGGTEaNl~al~~ar~~~---~~-----~~vi~s~-~~H~Sv~kaa~~lg~~----  134 (374)
T PLN03032         68 EVGVLDWFARLWELEKDEYWGYITTCGTEGNLHGILVGREVF---PD-----GILYASR-ESHYSVFKAARMYRME----  134 (374)
T ss_pred             HHHHHHHHHHHhCCCCccCCEEEeCchHHHHHHHHHHHHHhC---CC-----cEEEeCC-CceeHHHHHHHHcCCC----
Confidence            344667777777653  45  999999999999999886431   22     3454444 4455544443333211    


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC-----CEEEEe
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-----ILMIAD  168 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~-----i~li~D  168 (374)
                              +..+|.+     |+++|+++|++...++.+++++...+.+|.+.|    +++|.++|++||     +++++|
T Consensus       135 --------~~~V~~d~~g~id~~~L~~~i~~~~~~~~lvv~tagtt~tG~idp----i~eI~~i~~~~g~~~~~~~lHvD  202 (374)
T PLN03032        135 --------AVKVPTLPSGEIDYDDLERALAKNRDKPAILNVNIGTTVKGAVDD----LDRILRILKELGYTEDRFYIHCD  202 (374)
T ss_pred             --------CeEeeeCCCCcCcHHHHHHHHHHcCCCCEEEEEEecCcCCccCCC----HHHHHHHHHHhCCCCCCeeEEEE
Confidence                    1122221     899999999864346778888888888999999    999999999997     589999


Q ss_pred             ccccCCccc----ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----CCCCCCC--CHHHH
Q 017259          169 EIQSGLARS----GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGG--NPLAS  235 (374)
Q Consensus       169 ea~~~~~~~----g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~  235 (374)
                      .+++++...    ...+.+   ....|.+++|  |.++.+. ++|.++.+++..+.+....     ...+..+  +....
T Consensus       203 aA~gg~~~p~~~~~~~~~~---~~~vDSis~s~HK~~g~P~-g~G~ll~r~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~~  278 (374)
T PLN03032        203 GALFGLMMPFVSRAPEVTF---RKPIGSVSVSGHKFLGCPM-PCGVALTRKKHVKALSQNVEYLNSRDATIMGSRNGHAP  278 (374)
T ss_pred             ccchhhhhhccCCCcccCC---CcCCcEEEECcccccCCCc-CeEEEEEEchhhHhhccCCcccCCCCCcccCCCchHHH
Confidence            999853110    011111   1246777777  7666577 7788888877666553211     1112333  44566


Q ss_pred             HHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          236 AVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       236 ~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      +..+.+++.+..+++   .++..++.+++.++|++.     +......+..+.+.|..+.      .+.     +.+|..
T Consensus       279 l~~w~~l~~~G~~g~~~~~~~~~~~a~~l~~~l~~~-----~~~~~~~p~~~~V~f~~~~------~~~-----~~~~w~  342 (374)
T PLN03032        279 LYLWYTLRRKGYRGIKRDVQHCMRNAHYLKDRLTEA-----GLTCRLNELSSTVVFERPM------DEA-----FIKKWQ  342 (374)
T ss_pred             HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcEEECCCceEEEEcCCC------cHh-----Hhheee
Confidence            778888888776644   555556677777777654     2222223334444443331      121     235776


Q ss_pred             eccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          313 AKPTHDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       313 v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +.+. .+.+|+++....+.+.++++++.|++
T Consensus       343 l~~~-~~~~hi~vm~~~~~~~id~fi~dl~~  372 (374)
T PLN03032        343 LACE-GDIAHVVVMPNVTVEKLDEFVEELVE  372 (374)
T ss_pred             eccc-CCEEEEEECCCCCHHHHHHHHHHHhc
Confidence            6654 46899988877888999999988764

>PRK06434 cystathionine gamma-lyase; Validated

Probab=99.70  E-value=3.9e-16  Score=145.17  Aligned_cols=290  Identities=17%  Similarity=0.211  Sum_probs=177.9

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.+|..++|+++++++.|.+.++.++||+.|+.+++..+     .++|     |+|++....|.+..........
T Consensus        56 ~~Y~r~~~P~~~~lE~~la~leg~~~av~~sSG~aAi~~al~al-----l~~G-----D~Vl~~~~~yg~t~~~~~~~~~  125 (384)
T PRK06434         56 YIYTRWGNPTVQAFEEKYAVLENAEHALSFSSGMGAITSAILSL-----IKKG-----KRILSISDLYGQTFYFFNKVLK  125 (384)
T ss_pred             cceeCCCChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEecCccchHHHHHHHHHH
Confidence            44566789999999999999999999999999999999999877     5667     9999988777554433211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+.+++.++.+.++  ++  ++++++++++.+.|+++.+.+    +++|.++|++++  +++|.+++
T Consensus       126 ~---------~Gi~v~fvd~~~~~~~~--l~--~~~tklv~~e~~snpt~~v~D----i~~I~~la~~~~--lvVD~t~~  186 (384)
T PRK06434        126 T---------LGIHVDYIDTDRLNSLD--FD--PSNYDLIYAESITNPTLKVPD----IKNVSSFCHEND--VIVDATFA  186 (384)
T ss_pred             h---------cCcEEEEECCCChhhee--ec--CCCeeEEEEEcCCCCCceeec----HHHHHHHHHHcC--eEEECCCC
Confidence            1         11223344443334443  33  247999999999999998888    999999999998  46699975


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccC-Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~-G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .. ..+.     ..+...|++++|  |.++| |-+-.|.++. ++++.+.++..........+++.++.++..++.+  +
T Consensus       187 s~-~~~~-----pl~~gaDivv~S~tK~i~G~~d~~gG~vv~~~~~~~~~~~~~~~~~G~~~~~~~A~l~~~gL~tL--~  258 (384)
T PRK06434        187 SP-YNQN-----PLDLGADVVIHSATKYISGHSDVVMGVAGTNNKSIFNNLVERRKTLGSNPDPIQAYLALRGLKTL--G  258 (384)
T ss_pred             Cc-ccCC-----chhcCCCEEEeecccccCCCCCceEEEEecCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhCCCcH--H
Confidence            21 1222     223456777555  98876 3102444555 4555555542211223344666655555555544  2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHh----CCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe--------
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQ----FPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA--------  313 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v--------  313 (374)
                      ...++.+++..++.+.|+.....    +|+..   ....+.|.++.|+++..   .....|.+.|.--.+.+        
T Consensus       259 ~R~~r~~~~a~~~a~~L~~~p~v~~V~yPgl~~~~~~~~g~g~~~sf~l~~~---~~~~~f~~~l~l~~~~~slG~~~sl  335 (384)
T PRK06434        259 LRMEKHNKNGMELARFLRDSKKISNVYYPDTEIGKKVLRGFGGMLSFELRSM---EDVHKFIRNLEIPMVAASLGGVESL  335 (384)
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCccEEECCChHHHHHhcCCCCceEEEEECCH---HHHHHHHHhCCcceEccCCCCCCee
Confidence            34666777777777777653210    11110   01235688888888632   13445555543211111        


Q ss_pred             --ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 --KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 --~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .|.                 ..+.+|+++++    |+.+.+++-|.++++
T Consensus       336 ~~~p~~~~h~~~~~e~~~~~gi~~~liRlsvGl----Ed~~dLi~dl~~Al~  383 (384)
T PRK06434        336 ITLPVETSHSSLSPEERERLGISDNLVRFSIGI----EDIDDLIKDIENALS  383 (384)
T ss_pred             eECCCccccccCCHHHHHhcCCCcCeEEEEeCc----CCHHHHHHHHHHHhc
Confidence              110                 14789999443    456667777777764

>PRK05355 3-phosphoserine/phosphohydroxythreonine aminotransferase; Provisional

Probab=99.70  E-value=1e-15  Score=142.03  Aligned_cols=284  Identities=10%  Similarity=0.045  Sum_probs=185.3

Q ss_pred             CcHHHHHHHHhcccCC-C--eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc-CCcc
Q 017259           21 DKFPVFAERLTSMFGY-D--MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~-~--~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~   95 (374)
                      +.+++..++|+++++. +  ++ ++++||+.+++.++..+     ..+|     +++++...+..|....-..-. +...
T Consensus        48 ~~~~~~~~~l~~l~~~~~~~~v~~~~gsgt~~~Ea~~~nl-----~~~g-----~~~l~i~~G~fg~r~~~~a~~~g~~~  117 (360)
T PRK05355         48 AVAEEAEADLRELLNIPDNYKVLFLQGGASLQFAMVPMNL-----LGGG-----KKADYVDTGSWSKKAIKEAKKYGEVN  117 (360)
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEEcCCchHHHHHHHHhc-----CCCC-----CeEEEEECCHHHHHHHHHHHHhCCce
Confidence            6788899999998874 2  34 66688999999999888     5566     677766666656543222111 1111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHH-HHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      .. ...+.   .   ...+..++++ +++   +++++|.+.+..+++|.+.++   +++|      ||+++++|.+++ +
T Consensus       118 ~~-~~~~~---~---g~~~~~~~~~~~l~---~~~~~V~~th~eTstGv~~~~---i~~i------~g~l~vVDavss-~  177 (360)
T PRK05355        118 VA-ASSED---D---GFTYIPPLDEWQLS---DDAAYVHYTSNETIDGTEFHE---LPDT------GDVPLVADMSSD-I  177 (360)
T ss_pred             EE-ecccc---c---CCCCCCChhhccCC---CCCCEEEEccCCCcceEecCc---cccc------CCCcEEEEcCcc-c
Confidence            00 00000   0   0012333333 554   367889999999999988721   6665      899999999998 2


Q ss_pred             cccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCC-C-----------CCCCCCCCHHHHHHHHH
Q 017259          175 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-E-----------HGSTFGGNPLASAVAIA  240 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~-~-----------~~~~~~~~~~~~~aa~~  240 (374)
                      +  +.++..+.  +  |++.+|  |+++ .. ++|+++.++++.+.+.+. .           ....++++.....+..+
T Consensus       178 g--~~~idv~~--~--d~~~~ssqK~lg-P~-Glg~l~~s~~~l~~~~~~~~~~~~~~~~~~~~~~~~Tp~~~~i~aL~~  249 (360)
T PRK05355        178 L--SRPIDVSK--F--GLIYAGAQKNIG-PA-GLTIVIVREDLLGRALPSIPSMLDYKTHADNDSMYNTPPTFAIYLAGL  249 (360)
T ss_pred             c--CccCCHHH--c--cEEEEecccccc-CC-ceEEEEECHHHHhhcccCCChHHHHHHHHhcCCccCCCcHHHHHHHHH
Confidence            1  22333332  2  366555  9986 44 678899999988777652 1           11235668888888999


Q ss_pred             HHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259          241 SLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT  316 (374)
Q Consensus       241 al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  316 (374)
                      +++.+.++    ++.++.+++.+++++.|+++... ..........+..+.|.+++..   ...++.+.+.++|+.+.++
T Consensus       250 aL~~i~~~gG~e~i~~r~~~l~~~l~~~l~~~~~~-~~~~~~~~rs~~v~sf~~~~~~---~~~~~~~~~~~~Gi~~~~~  325 (360)
T PRK05355        250 VFKWLKEQGGVAAMEKRNQEKAALLYDAIDSSDFY-RNPVAPEDRSRMNVPFTLADEE---LDKKFLAEAKAAGLVGLKG  325 (360)
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCc-ccCCChhhcCCcEEEEEcCChH---HHHHHHHHHHHCCCcccCC
Confidence            99988664    45666677777777777765311 0011111223355666665532   4467878899999999666


Q ss_pred             C--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 H--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .  .+.+|+++...+|.+|+++++++|+++++
T Consensus       326 ~~~~g~vRiS~~~~nt~eei~~l~~~l~~~~~  357 (360)
T PRK05355        326 HRSVGGMRASIYNAMPLEGVQALVDFMKEFER  357 (360)
T ss_pred             CCccCcEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            4  47899999999999999999999999886

>PRK04311 selenocysteine synthase; Provisional

Probab=99.69  E-value=1.9e-14  Score=136.61  Aligned_cols=293  Identities=17%  Similarity=0.163  Sum_probs=177.0

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC--C-cccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH--G-RTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh--g-~~~~~~~~~~~~~~   96 (374)
                      .+.+..+++.+++++|.+.+++++|++.|+..++..+      .+|     ++||+.+..+.  | .......+. ..+ 
T Consensus       126 g~r~~~~e~~lA~l~Gae~a~vv~sgtaAl~l~l~~l------~~G-----deVIvs~~e~~~~ggs~~i~~~~~-~~G-  192 (464)
T PRK04311        126 GSRDRALAALLCALTGAEDALVVNNNAAAVLLALNAL------AAG-----KEVIVSRGELVEIGGAFRIPDVMR-QAG-  192 (464)
T ss_pred             chHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHHHh------CCC-----CEEEEcchhhhhcCcchhhHHHHH-HCC-
Confidence            3446789999999999999999999999998888544      456     89999876432  2 111100010 001 


Q ss_pred             cccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCC--CC--cccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           97 IRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGE--AG--VIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~--~g--~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                              ..+..+..   .++++++++|+   ++|+++++++..|+  .|  ...+    +++|+++|++||+++|+|.
T Consensus       193 --------~~l~~v~~~~~t~~~dle~aI~---~~TklV~~vh~sN~~i~G~~~~~d----l~eI~~lak~~gi~vivD~  257 (464)
T PRK04311        193 --------ARLVEVGTTNRTHLRDYEQAIN---ENTALLLKVHTSNYRIEGFTKEVS----LAELAALGKEHGLPVVYDL  257 (464)
T ss_pred             --------cEEEEECCCCCCCHHHHHHhcC---ccCeEEEEEcCCCccccccCCcCC----HHHHHHHHHHcCCeEEEEC
Confidence                    11122222   36888999887   57899999888775  23  4566    9999999999999999999


Q ss_pred             cccCCcc---c---ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          170 IQSGLAR---S---GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       170 a~~~~~~---~---g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      +.+-++.   .   +.+..........|++++|  |.++|+  ..|++++++++++.++.......+...-..+++..+.
T Consensus       258 gsG~l~~~~~~gl~~~p~~~~~l~~GaDiv~fSg~K~LgGp--~~G~i~g~~~li~~l~~~~~~r~lr~dk~~l~~l~~~  335 (464)
T PRK04311        258 GSGSLVDLSQYGLPDEPTVQELLAAGVDLVTFSGDKLLGGP--QAGIIVGKKELIARLKKHPLKRALRVDKLTLAALEAT  335 (464)
T ss_pred             CCcccccchhccCCCCCchhhHHhcCCcEEEecCcccccCC--ceEEEEEcHHHHHHHhhchhHHHHhcchHHHHHHHHH
Confidence            6432211   1   1221122233567899888  988865  3677889999888777432222232333444455555


Q ss_pred             HHHHhh--hcH------------HHHHHHHHHHHHHHHHHHHHh-CC-Cceee--EEEEe-------eeEEEEeccCCCc
Q 017259          242 LDVIRD--EKL------------AERSAHLGEELRQHLFKIQQQ-FP-NYVKE--VRGRG-------LFNAVEFDKTALP  296 (374)
Q Consensus       242 l~~~~~--~~~------------~~~~~~~~~~~~~~l~~~~~~-~~-~~~~~--~~~~g-------~~~~~~~~~~~~~  296 (374)
                      +....+  +.+            .++.+++.+++.+.|+..... +. .++..  .-+.|       .-+.+.+...  +
T Consensus       336 l~~~~~~~~~~~~i~~l~~l~~~~~~~~~~A~~la~~L~~~~~~~~~~~~~~~~~~~gggs~p~~~~~~~~v~~~~~--~  413 (464)
T PRK04311        336 LRLYLDPEKLAEEIPTLRLLTRSPEELRARAERLAAALKAALGAAFAVEVVPSFSQVGGGSLPVDRLPSAAVTLTPK--D  413 (464)
T ss_pred             HHHHhChhhhhhhCcHHHHhcCCHHHHHHHHHHHHHHHHhccCCCeeEEEEEccCccCCCCCcCCCCCeEEEEEeCC--C
Confidence            543221  111            255556677777766654210 00 01111  00011       1122233221  1


Q ss_pred             hhHHHHHHHHHHC--CeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          297 VSAYDICLKMKER--GILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       297 ~~~~~~~~~l~~~--Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+..++.++|++.  .|+.+.. .+.+.+-+. +..++|++.++++|++++.
T Consensus       414 ~~~~~l~~~lr~~~~~i~~r~~-~~~~~ld~r-~~~~~~~~~~~~~~~~~~~  463 (464)
T PRK04311        414 RSLEALAARLRLLPPPVIGRIE-DGRLLLDLR-TLEEEDEERLAAALLEALN  463 (464)
T ss_pred             CCHHHHHHHHhcCCCCEEEEEE-CCEEEEEeC-cCCHHHHHHHHHHHHHHhh
Confidence            2678899999875  4666543 666777643 6688899999999998764

>PRK05613 O-acetylhomoserine aminocarboxypropyltransferase; Validated

Probab=99.69  E-value=8.1e-16  Score=145.48  Aligned_cols=165  Identities=16%  Similarity=0.162  Sum_probs=116.8

Q ss_pred             cCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           14 SSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        14 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++...+|..+.++++++++.|.+..++++||++|+.+++..+     .++|     |+||+.+..|.+...........
T Consensus        62 ~Y~r~~~pt~~~le~~la~l~g~~~~v~fsSG~~Ai~~al~~l-----l~~G-----d~VI~~~~~y~~t~~~~~~~l~~  131 (437)
T PRK05613         62 IYSRLTNPTVEALENRIASLEGGVHAVAFASGQAAETAAILNL-----AGAG-----DHIVTSPRLYGGTETLFLVTLNR  131 (437)
T ss_pred             eeeCccChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEECCCccHHHHHHHHHHHHh
Confidence            3445668889999999999998888999999999999888776     5677     99999988876652221111111


Q ss_pred             ccccccCCCCCCCceecc-CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~-~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .+         ..+.+++ -.|+++++++++   +++++++++.+.|++|.+.+    +++|.++|+++|+++|+|.+++
T Consensus       132 ~G---------i~v~~vd~~~d~e~l~~~l~---~~tk~V~~e~~~Np~~~v~d----i~~I~~la~~~gi~livD~t~a  195 (437)
T PRK05613        132 LG---------IEVTFVENPDDPESWQAAVQ---PNTKAFFGETFANPQADVLD----IPAVAEVAHRNQVPLIVDNTIA  195 (437)
T ss_pred             cC---------eEEEEECCCCCHHHHHHhCC---ccCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCeEEEECCCc
Confidence            01         2233332 237889998887   57889999998888898998    9999999999999999999986


Q ss_pred             CCcccccCcccccCCCCCcEEE--ecccccC-Cccchhhhee
Q 017259          173 GLARSGRMLASDWEEVRPDMVI--LGKALGG-GVIPVSAVLA  211 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s--~sK~~~~-G~~~~G~~~~  211 (374)
                      ..    ..  ........|+++  +.|.++| |- .+|+++.
T Consensus       196 ~g----~~--~~p~~~GaDivv~S~~K~l~G~gd-~~gG~vv  230 (437)
T PRK05613        196 TA----AL--VRPLELGADVVVASLTKFYTGNGS-GLGGVLI  230 (437)
T ss_pred             cc----cc--cChHHhCCCEEEeeccceecCCCc-ceeEEEE
Confidence            21    11  111123457664  4598886 44 4455333

>COG0626 MetC Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.68  E-value=1.9e-15  Score=138.48  Aligned_cols=295  Identities=18%  Similarity=0.176  Sum_probs=190.2

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-.+.|++.++++.|.+..+.++||..|+..++..+     .+.|     |+|+.....|.+.......+.
T Consensus        54 ~~~Y~R~~nPT~~~lE~~~a~LEg~~~~~afsSGmaAI~~~~l~l-----l~~G-----D~vl~~~~~YG~t~~~~~~~l  123 (396)
T COG0626          54 GYDYSRTGNPTRDALEEALAELEGGEDAFAFSSGMAAISTALLAL-----LKAG-----DHVLLPDDLYGGTYRLFEKIL  123 (396)
T ss_pred             CcccccCCCccHHHHHHHHHHhhCCCcEEEecCcHHHHHHHHHHh-----cCCC-----CEEEecCCccchHHHHHHHHH
Confidence            344556679999999999999999999999999999999998888     5667     999999999877655544333


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .+         +..++.+++..+.+.+++++.+  +++++|++|++.||+-.+.+    +++|+++|+++|+++|+|+++
T Consensus       124 ~~---------~gi~~~~~d~~~~~~~~~~~~~--~~tk~v~lEtPsNP~l~v~D----I~~i~~~A~~~g~~vvVDNTf  188 (396)
T COG0626         124 QK---------FGVEVTFVDPGDDEALEAAIKE--PNTKLVFLETPSNPLLEVPD----IPAIARLAKAYGALVVVDNTF  188 (396)
T ss_pred             Hh---------cCeEEEEECCCChHHHHHHhcc--cCceEEEEeCCCCccccccc----HHHHHHHHHhcCCEEEEECCc
Confidence            22         1133444444466667767663  48999999999999999998    999999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccCCc-cchhhheeC-HHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLAD-KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~-~~~G~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +..      .....+....|++  |.+|-++|.- +=+|.++++ +++.+.+..... ......+++.+...+..++-+.
T Consensus       189 atP------~~q~PL~~GaDIVvhSaTKyl~GHsDvl~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~dA~l~lRGlkTL~  262 (396)
T COG0626         189 ATP------VLQRPLELGADIVVHSATKYLGGHSDVLGGVVLTPNEELYELLFFAQRANTGAVLSPFDAWLLLRGLRTLA  262 (396)
T ss_pred             ccc------cccChhhcCCCEEEEeccccccCCcceeeeEEecChHHHHHHHHHHHHhhcCCCCCHHHHHHHHhccchHH
Confidence            732      1223333445765  7779998721 023445544 455555421111 1223446666665665555442


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      -  ..++..++...+.+.|++-..    .+|+...         ...+.|.++.|++.++.   ...+|.+.|.--.+..
T Consensus       263 ~--Rm~~~~~nA~~IA~~L~~~p~V~~V~yPgl~shp~he~~~rq~~g~gg~~Sf~l~~~~---~~~~f~~~L~l~~~a~  337 (396)
T COG0626         263 L--RMERHNENALKIAEFLADHPKVKKVYYPGLPSHPGHELAKRQMTGYGGLFSFELKNEE---AAKKFLDSLKLFKLAE  337 (396)
T ss_pred             H--HHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCCcHHHHHHhcCCCceEEEEEeCChH---HHHHHHHhCCccEEec
Confidence            2  245556666666666665210    0111000         01137888899887621   4555666554332222


Q ss_pred             ----------ccC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 ----------KPT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ----------~~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                .|.                 .++.+|++.++    |+++.+++-|+++++
T Consensus       338 SlGgveSLi~~pa~~th~~~~~~~r~~~Gi~~~LvRlSVGl----Ed~eDLi~Dl~~Al~  393 (396)
T COG0626         338 SLGGVESLISHPATMTHASIPLEERAKAGITDGLVRLSVGL----EDVEDLIADLEQALA  393 (396)
T ss_pred             cCCCcccccccccccCcccCCHhHHHhcCCCCCeEEEEecC----CCHHHHHHHHHHHHH
Confidence                      110                 26899999443    566667777777766

>TIGR02618 tyr_phenol_ly tyrosine phenol-lyase

Probab=99.67  E-value=2.7e-14  Score=132.54  Aligned_cols=328  Identities=16%  Similarity=0.177  Sum_probs=191.3

Q ss_pred             HHHHH-HHhccccCc-CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            3 ALQEQ-AEKLTLSSR-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         3 a~~~~-~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      ||+++ +........ +..++-+.+|++.+++++|.+++++++||+.|++.+..+.     +++|     |.|  +.++|
T Consensus        51 aMs~~q~a~~~~GDe~yag~~s~~~lE~~va~~~G~~~av~v~sGT~Al~ll~~l~-----l~pG-----DeV--psn~~  118 (450)
T TIGR02618        51 AMSDKQWAGLMMGDEAYAGSRNFYHLERTVRELYGFKYVVPTHQGRGAENLLSQIA-----IKPG-----DYV--PGNMY  118 (450)
T ss_pred             HHHHHHHHHhhhcchhhcCCCcHHHHHHHHHHHHCCCeEEEcCCHHHHHHHHHHhC-----CCCc-----CEE--CCcee
Confidence            55555 555443332 3457779999999999999999999999999988754322     6788     866  44443


Q ss_pred             CCcccccccccCCccccccCCC--CCCCceeccC--C-CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGFGP--LLPGHLKVDF--G-DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~--~-d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      ...+.......+. .+......  .... ...|+  + |+++++++|+... ++++.+.++.+.|..|+.+.+.+.++++
T Consensus       119 f~Tt~ahIe~~Ga-v~vDi~~dea~~~~-~~~p~~GniD~~~Le~aI~~~~~~~~~lV~~e~t~N~~GG~pvs~~~l~~I  196 (450)
T TIGR02618       119 FTTTRYHQEKNGA-TFVDIIIDEAHDAQ-LNIPFKGNVDLKKLQKLIDEVGADKIPYICLAVTVNLAGGQPVSMANMREV  196 (450)
T ss_pred             HHHHHHHHHhCCe-EEEeeecccccccc-cCCCCCCCcCHHHHHHHhccccCcccCceEEEEecccCCCeeCCHHHHHHH
Confidence            2222221222221 11110000  0000 00111  1 8999999998532 3556667766666655555588899999


Q ss_pred             HHHHHhcCCEEEEeccccC----Cc------ccccCccc--ccCCCCCcEEEec--ccccCCccchhhhee--CHHHHhh
Q 017259          155 RDLCSKYNILMIADEIQSG----LA------RSGRMLAS--DWEEVRPDMVILG--KALGGGVIPVSAVLA--DKEVMLC  218 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~----~~------~~g~~~~~--~~~~~~~d~~s~s--K~~~~G~~~~G~~~~--~~~~~~~  218 (374)
                      .++|++||++||.|.++.-    |.      +.+....-  ....-..|.+++|  |..+  . ++|.+++  +++++++
T Consensus       197 ~elA~~~Gl~vi~DaAR~~gNA~~I~~re~g~~~~~i~ei~~e~~~~aD~~~~S~~Kd~~--~-~~GG~l~~~d~~l~~k  273 (450)
T TIGR02618       197 RELCEAHGIKVFYDATRCVENAYFIKEREQGYEDKSIAEILKEMMSYADGCTMSGKKDCL--V-NIGGFLCMNDDEMFQS  273 (450)
T ss_pred             HHHHHHcCCEEEEEccchhhChhhhhcccccccCCCHHHHHHHHhccCcEEEEeeccCCC--C-CCceEEEeCCHHHHHH
Confidence            9999999999999999862    11      11111000  0001145665554  3322  2 5555443  6788887


Q ss_pred             cCCCC----CCCCCCC-CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-
Q 017259          219 IQPGE----HGSTFGG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-  292 (374)
Q Consensus       219 ~~~~~----~~~~~~~-~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-  292 (374)
                      ++...    ...+|++ ..-.+.+...+|+...+..+.++.....+++.+.|.+.+  +| ++  .+..|+.++++... 
T Consensus       274 ~r~~~~~~eG~~tyGgla~r~~~ala~gL~e~~~~~y~~~r~~~a~~La~~L~~~G--vp-v~--~p~ggh~V~vda~~~  348 (450)
T TIGR02618       274 AKELVVVFEGMPSYGGLAGRDMEAMAIGIREAVDYEYIEHRVKQVRYLGDKLKAAG--VP-IV--EPVGGHAVFLDARRF  348 (450)
T ss_pred             HHHHhhhcCCccccCchhhhhHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHCC--Cc-cc--CCCCcceEEEEhHHh
Confidence            76431    1223333 222333444455555455667777777888888887772  22 32  34456777776432 


Q ss_pred             ---CCC-chhHHHHHHHHH-HCCeEe---ccC------------C--CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccC
Q 017259          293 ---TAL-PVSAYDICLKMK-ERGILA---KPT------------H--DTIVRLTPP-LSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       293 ---~~~-~~~~~~~~~~l~-~~Gi~v---~~~------------~--~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                         -+. .-.+..++..|- +.||--   ...            .  -..+|+++| ..-|.++++...++|..+.+ ..
T Consensus       349 lph~~~~~~p~~al~~~ly~~~gir~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~-~~  427 (450)
T TIGR02618       349 LPHIPQDQFPAQSLAASIYVETGVRSMERGIVSAGRNNVTGEHHRPKLELVRLTIPRRVYTYAHMDVVADGIIKLYK-HR  427 (450)
T ss_pred             CCCCChhhChHHHHHHHHHHHhCccEEeecceecccCCCCCcccCCccceeeeccccccccHhHHHHHHHHHHHHHh-hH
Confidence               111 124566666664 445432   110            1  368899776 45689999999999999987 54


Q ss_pred             CcCC
Q 017259          350 PKMR  353 (374)
Q Consensus       350 ~~~~  353 (374)
                      ..+.
T Consensus       428 ~~~~  431 (450)
T TIGR02618       428 DDIR  431 (450)
T ss_pred             hhcC
Confidence            4433

This model describes a group of tyrosine phenol-lyase (4.1.99.2) (beta-tyrosinase), a pyridoxal-phosphate enzyme closely related to tryptophanase (4.1.99.1) (see model TIGR02617). Both belong to the beta-eliminating lyase family (pfam01212)

>PLN02724 Molybdenum cofactor sulfurase

Probab=99.67  E-value=1.6e-14  Score=147.13  Aligned_cols=307  Identities=12%  Similarity=0.090  Sum_probs=189.6

Q ss_pred             CCcHHHHHHHHhcccCC--C--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGY--D--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ...+++.++.+++++|.  +  .|+||+|+|+|++.+...+.    .++|     ++|++..-. |........+....+
T Consensus        77 ~~~~e~aR~~ia~~lga~~~~~~VvFtsnaT~alnlva~~l~----~~~g-----d~Iv~t~~e-H~svl~~~~~a~~~G  146 (805)
T PLN02724         77 SDTIESARQQVLEYFNAPPSDYACVFTSGATAALKLVGETFP----WSSE-----SHFCYTLEN-HNSVLGIREYALEKG  146 (805)
T ss_pred             HHHHHHHHHHHHHHhCCCccceEEEEeCChHHHHHHHHHHCC----CCCC-----CeEEEeecc-ccchHHHHHHHHHcC
Confidence            34577788999998875  2  47999999999998876552    3456     888886555 444443332211111


Q ss_pred             ccccCCCCCCCc-----eeccCC-CHHHHHHHHH----h---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc-
Q 017259           96 AIRGFGPLLPGH-----LKVDFG-DITALEKIFK----E---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY-  161 (374)
Q Consensus        96 ~~~~~~~~~~~~-----~~~~~~-d~~~le~~l~----~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~-  161 (374)
                      ....+.+.....     .....+ +.+++++.++    .   .+++++++.+...+|.+|.+.|    ++.+..+++.. 
T Consensus       147 ~~v~~v~~~~~~~~~~~~~g~~~~~~~~l~~~~~~~l~~~~~~~~~t~LVa~~~vsN~tG~i~p----i~~i~~~~~~~~  222 (805)
T PLN02724        147 AAAIAVDIEEAANQPTNSQGSVVVKSRGLQRRNTSKLQKREDDGEAYNLFAFPSECNFSGAKFP----LDLVKLIKDNQH  222 (805)
T ss_pred             CeEEeccchhccccccccccccccchhhhhhhhhhhhccccccCCCcceEEEEccccCCCCcCC----HHHHHHHHHhcc
Confidence            111111110000     000000 1144555432    1   1246789999999999999998    87665544432 


Q ss_pred             -------CCEEEEeccccCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC-C----
Q 017259          162 -------NILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS-T----  227 (374)
Q Consensus       162 -------~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~-~----  227 (374)
                             ++++++|.+|+ .+   . ..++...+.+|++++|  |.+++.. ++|+++.++++.+.+.+...+. +    
T Consensus       223 ~~~~~~g~~~v~vDaaQ~-~g---~-~piDv~~~~~Dfl~~S~HK~~GgP~-G~G~L~vr~~~~~~l~p~~~GGg~~~~~  296 (805)
T PLN02724        223 SNFSKSGRWMVLLDAAKG-CG---T-SPPDLSRYPADFVVVSFYKIFGYPT-GLGALLVRRDAAKLLKKKYFGGGTVAAS  296 (805)
T ss_pred             cccccCcceEEEeehhhh-cC---C-CCCChhhcCCCEEEEecceeccCCC-CceEEEEehhhhhhhcCCccCCCceEEE
Confidence                   36899999997 21   1 1333345678998887  9887666 7899999988777666532211 0    


Q ss_pred             -------------------CCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHh--CCCc-eee----
Q 017259          228 -------------------FGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ--FPNY-VKE----  278 (374)
Q Consensus       228 -------------------~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--~~~~-~~~----  278 (374)
                                         .+.+..+.+++.++++.+..   +.+.++.+.+.+++.+.|+++...  .|.+ +..    
T Consensus       297 ~~~~~~~~~~~~~~~rfE~GT~n~~~i~~l~aal~~l~~ig~~~I~~~~~~L~~~l~~~L~~l~~~~g~~~v~iyg~~~~  376 (805)
T PLN02724        297 IADIDFVKRRERVEQRFEDGTISFLSIAALRHGFKLLNRLTISAIAMHTWALTHYVANSLRNLKHGNGAPVCVLYGNHTF  376 (805)
T ss_pred             ecccceeeccccHHHHhcCCCcchhHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHhccCCCCCeEEEEcCCCCC
Confidence                               13466666777777777655   356778888888888888776410  0011 111    


Q ss_pred             ---EEEEeeeEEEEeccCCCc-hhHHHHHHHHHHCCeEeccCC-------------------------------------
Q 017259          279 ---VRGRGLFNAVEFDKTALP-VSAYDICLKMKERGILAKPTH-------------------------------------  317 (374)
Q Consensus       279 ---~~~~g~~~~~~~~~~~~~-~~~~~~~~~l~~~Gi~v~~~~-------------------------------------  317 (374)
                         ...++.++.|.+...... ....++...+.++||.++.+.                                     
T Consensus       377 ~~~~~~r~~ivsFnv~~~~~~~v~~~~v~~l~~~~gI~vR~G~~Ca~~~~~~~lg~~~~~l~~~~~~~~~c~~~~~~~~~  456 (805)
T PLN02724        377 KLEFHIQGPIVTFNLKRADGSWVGHREVEKLASLSGIQLRTGCFCNPGACAKYLGLSHKDLQANFEAGHVCWDDQDVIHG  456 (805)
T ss_pred             CCCcccccCEEEEEEEcCCCCEeCHHHHHHHHHhcCcEEeeccccCchHHHHHcCCCHHHHHHHhhcCCccCchhheecC
Confidence               123567777777543211 123445544456788886431                                     


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+++|+|+++.+|.+|++++++.|++.+.
T Consensus       457 ~~~G~vRvS~g~ynt~eDvd~lv~~l~~~~~  487 (805)
T PLN02724        457 RPTGAVRVSFGYMSTFEDCQKFIDFIISSFV  487 (805)
T ss_pred             cccceEEEEcCccCCHHHHHHHHHHHHHHhh
Confidence              17899999999999999999999999886

>PLN02880 tyrosine decarboxylase

Probab=99.67  E-value=5.3e-15  Score=142.10  Aligned_cols=307  Identities=14%  Similarity=0.062  Sum_probs=180.1

Q ss_pred             HHHHHHHhcccCCCe---------EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           24 PVFAERLTSMFGYDM---------VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        24 ~~l~~~l~~~~~~~~---------~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++.++|++.+|.++         -++++|||+|+..|+.++|.......|......-++..+..-|.....+..+.+-+
T Consensus       125 ~~vi~wl~~l~g~p~~~~~~~~~gG~~tsggs~anl~al~~AR~~~~~~~g~~~~~~~vv~~S~~aH~Sv~Kaa~~lGlg  204 (490)
T PLN02880        125 MIVLDWLAKLLNLPEQFLSTGNGGGVIQGTASEAVLVVLLAARDRVLRKVGKNALEKLVVYASDQTHSALQKACQIAGIH  204 (490)
T ss_pred             HHHHHHHHHHhCCCchhhcCCCCceEEcCccHHHHHHHHHHHHHHHHHHhcccccCCeEEEEcCCchHHHHHHHHHcCCC
Confidence            345666666666553         58899999999999999986542222311111223333333366666555555432


Q ss_pred             cccccCCCCCCCceeccCC-------CHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259           95 EAIRGFGPLLPGHLKVDFG-------DITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL  164 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~  164 (374)
                      .-         .+..+|.+       |+++|+++|++   .+..+.+|+.+-...++|.+.|    +++|.++|++||++
T Consensus       205 ~~---------~v~~Vp~d~~~~~~md~~~L~~~i~~~~~~g~~p~~vvataGTT~~GaiDp----l~eI~~i~~~~~iw  271 (490)
T PLN02880        205 PE---------NCRLLKTDSSTNYALAPELLSEAISTDLSSGLIPFFLCATVGTTSSTAVDP----LLELGKIAKSNGMW  271 (490)
T ss_pred             HH---------HEEEeecCCCcCCcCCHHHHHHHHHHHHHCCCccEEEEEecCCCcCcccCc----HHHHHHHHHHcCCE
Confidence            10         11122221       78999999974   2334666666666777898998    99999999999999


Q ss_pred             EEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCH--HHHhhcCCCC----C-----CCCC--
Q 017259          165 MIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK--EVMLCIQPGE----H-----GSTF--  228 (374)
Q Consensus       165 li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~--~~~~~~~~~~----~-----~~~~--  228 (374)
                      +++|.+|+|+...-..+.....++ .+|.++++  |.+..++ +.|.++.++  .+...+....    .     ..++  
T Consensus       272 lHVDaA~gg~~~~~~~~~~~l~gie~aDSit~d~HKwl~~P~-~~g~llvr~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~  350 (490)
T PLN02880        272 FHVDAAYAGSACICPEYRHYIDGVEEADSFNMNAHKWFLTNF-DCSLLWVKDRNALIQSLSTNPEFLKNKASQANSVVDY  350 (490)
T ss_pred             EEEehhhHHHHHhCHHHHHHhcCchhcCEEEECchhhcCCCc-cEEEEEEeCHHHHHHHHccCHHHhcCccccccCCCCh
Confidence            999999986422111111112233 46766665  9988777 778877653  2222222110    0     0000  


Q ss_pred             ------CCCHHHHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc---
Q 017259          229 ------GGNPLASAVAIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP---  296 (374)
Q Consensus       229 ------~~~~~~~~aa~~al~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~---  296 (374)
                            .+..+.....+..++.+..+++.++++   ++.+++.+.+++.    |++..-.++...++.|.++.....   
T Consensus       351 ~~~~i~~~rr~~alklw~~l~~~G~~g~~~~i~~~~~lA~~~~~~l~~~----~~~el~~~~~~~iv~Fr~~~~~~~~~~  426 (490)
T PLN02880        351 KDWQIPLGRRFRSLKLWMVLRLYGVENLQSYIRNHIKLAKEFEQLVAQD----SRFEVVTPRIFSLVCFRLVPPKNNEDN  426 (490)
T ss_pred             hccCcCCCCcccHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEEeCCCCChhh
Confidence                  112222344555677766677777766   6666666655443    222222233455666666432110   


Q ss_pred             --hhHHHHHHHHHHCC-eEeccC---CCCEEEEecCCCC-CHHHHHHHHHHHHHHHhccC
Q 017259          297 --VSAYDICLKMKERG-ILAKPT---HDTIVRLTPPLSI-SSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       297 --~~~~~~~~~l~~~G-i~v~~~---~~~~lRi~~~~~~-~~e~i~~~~~~l~~~~~~~~  349 (374)
                        ....++.++|.+.| +++...   +..++|+++.... +++|++.+++.|.++.+ ++
T Consensus       427 ~~~~n~~l~~~l~~~g~~~v~~t~~~g~~~lR~~~~n~~tt~~di~~~~~~i~~~~~-~~  485 (490)
T PLN02880        427 GNKLNHDLLDAVNSSGKIFISHTVLSGKYVLRFAVGAPLTEERHVTAAWKVLQDEAS-KL  485 (490)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEEEEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-HH
Confidence              01235666666665 444432   4679999876555 46999999999988877 54

>PRK13237 tyrosine phenol-lyase; Provisional

Probab=99.66  E-value=7.3e-14  Score=130.03  Aligned_cols=312  Identities=14%  Similarity=0.113  Sum_probs=182.1

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-ccccCCccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-ISMSCDNEA   96 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-~~~~~~~~~   96 (374)
                      ..++-+.+|++.+++++|.+++++++||+.|++++..+.     +++|     |.|   .+.+|-.+..+ +...+. .+
T Consensus        75 agd~s~~~LE~~vAe~lG~e~aV~v~sGTaAl~ll~~l~-----v~pG-----d~V---p~n~~f~Tt~ahI~~~Ga-~f  140 (460)
T PRK13237         75 AGSRNFYHLEETVQEYYGFKHVVPTHQGRGAENLLSRIA-----IKPG-----QYV---PGNMYFTTTRYHQELNGG-IF  140 (460)
T ss_pred             cCCCcHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHhC-----CCCc-----CEE---CCccchHhhHHHHHhCCc-EE
Confidence            447789999999999999999999999999999864332     6677     754   33333333222 222221 11


Q ss_pred             ccc-----CCCCCCCceeccCC-CHHHHHHHHHhc-CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           97 IRG-----FGPLLPGHLKVDFG-DITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        97 ~~~-----~~~~~~~~~~~~~~-d~~~le~~l~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ...     +.+..  ......+ |+++++++|+.+ .++++.+.++.+.|..|+.+.+.+.+++|.++|++||++||.|.
T Consensus       141 vDi~~d~a~~~~~--~~p~tgnlD~d~Le~~I~~~~~~~~~lV~a~itvn~~GGqpvs~~~m~~I~elA~~~Gl~Vi~Da  218 (460)
T PRK13237        141 VDIIIDEAHDAQS--DHPFKGNVDLDKLQALIDEVGAENIAYICLAVTVNLAGGQPVSMANMRAVRELCDKHGIKVFFDA  218 (460)
T ss_pred             Eeeeccccccccc--CCCCCCCcCHHHHHHHhccccCCccCceEEEEecccCCCeeCCHHhHHHHHHHHHHcCCEEEEEC
Confidence            100     00000  0111122 899999999854 24455555555555555455577889999999999999999999


Q ss_pred             ccc-C---Cc------ccccCcc--cccCCCCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCCC----CCCCCCC
Q 017259          170 IQS-G---LA------RSGRMLA--SDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGE----HGSTFGG  230 (374)
Q Consensus       170 a~~-~---~~------~~g~~~~--~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~~----~~~~~~~  230 (374)
                      ++. +   |.      +.+....  .....-..|.++||  |.++.+.  .|+++. ++++.++++...    ...+|.+
T Consensus       219 Ara~gna~fI~~re~~y~~~~i~ei~~e~~s~aD~~t~S~~K~~~~~~--GG~i~t~D~eL~~~~r~~~~~~eG~~tygg  296 (460)
T PRK13237        219 TRCVENAYFIKEREEGYQDKSIKEIVHEMFSYADGCTMSGKKDCLVNI--GGFLAMNDEELFDEAKELVVVYEGMPSYGG  296 (460)
T ss_pred             cchhcChhhhcccccccCCCcHhHHhhhccCcCcEEEEeCCCCCCCCC--ceEEEECCHHHHHHHHHhccccCCCcCCCC
Confidence            987 3   11      1111100  00011245766555  6655322  234554 567888776541    2235544


Q ss_pred             C-HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc----CCC-chhHHHHHH
Q 017259          231 N-PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK----TAL-PVSAYDICL  304 (374)
Q Consensus       231 ~-~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~----~~~-~~~~~~~~~  304 (374)
                      - .=-+.|....++...+.++.++.-...+++.+.|.+.+     ++...+..|+-++++...    -+. .-.+..++.
T Consensus       297 ~~grd~~alAvgl~E~~~~~y~~~ri~~~~~l~~~L~~~G-----vpv~~p~ggH~v~vda~~~lph~~~~~~p~~al~~  371 (460)
T PRK13237        297 MAGRDMEAMAIGIEESVQYEYIEHRVGQVRYLGEKLLAAG-----VPIVEPVGGHAVFLDARRFLPHLPQDQFPAQALAA  371 (460)
T ss_pred             hhhhHHHHHHhHHHhhchHHHHHHHHHHHHHHHHHHHHCC-----CceecCCCceEEEEEhHHhCCCCCcccChHHHHHH
Confidence            2 21233333344444455677777778888888887653     322234455666665322    111 124666776


Q ss_pred             HHH-HCCeEec---c-------C-------CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          305 KMK-ERGILAK---P-------T-------HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       305 ~l~-~~Gi~v~---~-------~-------~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      .|- +.||--.   .       .       .-..+|+++| ..-|.++++...++|..+.+ ....+.
T Consensus       372 ~ly~~~GiR~~e~g~~~~~~~~~~~~~~~~~~el~rlaiprr~yt~~h~~~v~~~~~~~~~-~~~~~~  438 (460)
T PRK13237        372 ELYIESGVRSMERGIVSAGRDPKTGENHYPKLELVRLTIPRRVYTYAHMDVVADSVIKLYK-HREDIR  438 (460)
T ss_pred             HHHHHhCcCeEeecceecccCCCCCccCCCccceeeeccccccccHHHHHHHHHHHHHHHH-hHhhcC
Confidence            664 4455331   1       0       0368899776 45689999999999999887 544433

>TIGR00474 selA seryl-tRNA(sec) selenium transferase

Probab=99.65  E-value=1.3e-13  Score=130.66  Aligned_cols=286  Identities=19%  Similarity=0.186  Sum_probs=171.1

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC---CCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF---HGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y---hg~~~~~~~~~~~~~~   96 (374)
                      ...++.+++.+++++|.+..++++|++.|+..++..+      .+|     ++||+.+..+   .+.......+. ..+ 
T Consensus       121 g~r~~~le~~lA~l~gae~alvv~sg~aAi~l~l~~l------~~G-----deVIvs~~e~v~~ggs~~i~~~~~-~~G-  187 (454)
T TIGR00474       121 GSRYSHVEGLLCELTGAEDALVVNNNAAAVLLALNTL------AKG-----KEVIVSRGELVEIGGSFRIPDVME-QSG-  187 (454)
T ss_pred             chHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHh------CCc-----CEEEECCChhhhhcchhhHHHHHH-HcC-
Confidence            3456889999999999998999999999998888543      456     8999988763   22211111111 001 


Q ss_pred             cccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCCC--C--cccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           97 IRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEA--G--VIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~~--g--~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                              ..+..+..   .++++++++++   ++|+++++++..|.+  |  ...+    +++|+++|++||+++++|.
T Consensus       188 --------~~~~~v~~~~~~~l~dle~aI~---~~T~lv~~~h~sN~~~~G~~~~~d----l~~I~~la~~~g~~vivD~  252 (454)
T TIGR00474       188 --------AKLVEVGTTNRTHLKDYEDAIT---ENTALLLKVHTSNYRIVGFTEEVS----IAELVALGREHGLPVMEDL  252 (454)
T ss_pred             --------CEEEEeCCCCCCCHHHHHHhcC---cCCEEEEEEccCcccccCCCCCCC----HHHHHHHHHHcCCeEEEEC
Confidence                    11222222   36888998887   679998888876653  4  4677    9999999999999999997


Q ss_pred             cccCCccc------ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          170 IQSGLARS------GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       170 a~~~~~~~------g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      +.+-++..      ..+..........|++++|  |.++|..  .|++++++++++.++.......+...-+.+++..+.
T Consensus       253 ~sG~l~~~~~~gl~~~p~~~~~~~~GaDiv~fSg~K~LgGp~--~G~i~g~~~~i~~l~~~~l~r~lr~~k~~la~l~~~  330 (454)
T TIGR00474       253 GSGSLVDLSRYGLPDEPTVQEVIAAGVDLVTFSGDKLLGGPQ--AGIIVGKKELIERLKKNPLTRALRVDKLTLAALEAT  330 (454)
T ss_pred             CCcccccchhccCCCCcccccHhHcCCCEEEecCccccCCCe--EEEEEECHHHHHhhhhchhHHHHhhChHHHHHHHHH
Confidence            63322111      1121222334567899888  9987653  677889988887766432222222233333444444


Q ss_pred             HHHHhhh--cH------------HHHHHHHHHHHHHHHHHHHHhCCCceeeE---E---EEe-------eeEEEEeccCC
Q 017259          242 LDVIRDE--KL------------AERSAHLGEELRQHLFKIQQQFPNYVKEV---R---GRG-------LFNAVEFDKTA  294 (374)
Q Consensus       242 l~~~~~~--~~------------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~---~~g-------~~~~~~~~~~~  294 (374)
                      +....+.  .+            .++.+++..++.+.|+....  +++....   .   +.|       .-+.+.+... 
T Consensus       331 l~~~~~~~~a~~~~~~l~~l~~~~~~~~~~A~~la~~L~~~~~--~~~~~~~~~~~~~~ggg~~p~~~l~~~~v~~~~~-  407 (454)
T TIGR00474       331 LRLYLDPEKALEKIPTLRMLTQSPEELRARAERLAKRLKAALG--PGFELEIVPGLSQVGGGSLPDERLPSYAVTLTPD-  407 (454)
T ss_pred             HHHHhCchhhhhhchHHHHhccCHHHHHHHHHHHHHHHHhhcc--CCceEEEEEcCCcccCCCCcCCCCCeEEEEEecC-
Confidence            4332211  11            23566677777777766421  1111111   1   011       1122223211 


Q ss_pred             CchhHHHHHHHHHHCC--eEeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          295 LPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~G--i~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                       +.+..++.++|++..  |+.+. ..+.+.+-+. +..++|++.++++|
T Consensus       408 -~~~~~~l~~~lr~~~~~ii~r~-~~~~~~ld~r-~~~~~~~~~~~~~~  453 (454)
T TIGR00474       408 -GLSAEKLEARLRELPPPIIGRI-EDDRFLLDLR-TLLEDEEELLIEAL  453 (454)
T ss_pred             -CCCHHHHHHHHhcCCCCEEEEE-ECCEEEEEeC-cCCHHHHHHHHHHh
Confidence             126788999988764  66653 3666777643 56778888888765

In bacteria, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor. 3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This model describes SelA. This model excludes homologs that appear to differ in function from Frankia alni, Helicobacter pylori, Methanococcus jannaschii and other archaea, and so on.

>PLN02590 probable tyrosine decarboxylase

Probab=99.64  E-value=1.2e-13  Score=133.00  Aligned_cols=309  Identities=12%  Similarity=0.071  Sum_probs=178.3

Q ss_pred             HHHHHHhcccCCCe---------EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           25 VFAERLTSMFGYDM---------VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        25 ~l~~~l~~~~~~~~---------~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++.++|++.+|.+.         -++++|||+|+..|+.++|.......|.....+-++..+-.-|.....+..+.+-+.
T Consensus       174 ~vi~wl~~l~glp~~~~~~~~~gG~~~sGgSeAnl~al~aAR~~~~~~~g~~~~~~~vvy~S~~aH~Sv~KAa~ilGlg~  253 (539)
T PLN02590        174 IVLDWLAKLLQLPDHFLSTGNGGGVIQGTGCEAVLVVVLAARDRILKKVGKTLLPQLVVYGSDQTHSSFRKACLIGGIHE  253 (539)
T ss_pred             HHHHHHHHHhCCCcccccCCCCceEEcCchHHHHHHHHHHHHHHHHhhhcccCCCCEEEEecCCchHHHHHHHHHcCCCc
Confidence            35556666666543         578999999999999999875422222110112233333333555555544443211


Q ss_pred             ccccCCCCCCCceeccCC-------CHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           96 AIRGFGPLLPGHLKVDFG-------DITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                               ..+..++.+       |+++|+++|++   .+..+-+|+.+-...++|.+-|    +++|.++|++||+++
T Consensus       254 ---------~~vr~Vp~d~~~~~~md~~~L~~~I~~d~~~g~~P~~VvaTaGTT~tGaiDp----l~~Ia~i~~~~g~Wl  320 (539)
T PLN02590        254 ---------ENIRLLKTDSSTNYGMPPESLEEAISHDLAKGFIPFFICATVGTTSSAAVDP----LVPLGNIAKKYGIWL  320 (539)
T ss_pred             ---------ccEEEEeCCCCCCCcCCHHHHHHHHHHHHhcCCCcEEEEEEeCCCCCcccCC----HHHHHHHHHHhCCeE
Confidence                     112222221       79999999974   2234556666666667898888    999999999999999


Q ss_pred             EEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHH--HHhhcCCC------C-----------
Q 017259          166 IADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQPG------E-----------  223 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~--~~~~~~~~------~-----------  223 (374)
                      ++|.+|+|+...-..+.....++ ..|-+++.  |.+...+ ..|.++.++.  +.+.+...      .           
T Consensus       321 HVDaA~GG~al~~~~~r~~~~Gie~ADSit~D~HK~l~~p~-~cg~llvr~~~~l~~a~~~~~~YL~~~~~~~~~~~d~~  399 (539)
T PLN02590        321 HVDAAYAGNACICPEYRKFIDGIENADSFNMNAHKWLFANQ-TCSPLWVKDRYSLIDALKTNPEYLEFKVSKKDTVVNYK  399 (539)
T ss_pred             EEecchhhhhhcChhhHHHhcCCccCCEEEECchhhcCcCc-CEEEEEecCHHHHHHHhhcCHHHhCCcccccccCCCcc
Confidence            99999997532211111111232 34555555  8888777 7777766542  22222110      0           


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-c--
Q 017259          224 -HGSTFGGNPLASAVAIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-P--  296 (374)
Q Consensus       224 -~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-~--  296 (374)
                       .... ..-.+.....+.+++.+..+++.+.++   ++.+++.+.+++.    |.+..-.++.-.++.|.+..... .  
T Consensus       400 d~~i~-lsRr~raLklW~~lr~~G~~G~~~~i~~~~~lA~~~~~~l~~~----~~fel~~~~~l~iVcFr~~~~~~~~~~  474 (539)
T PLN02590        400 DWQIS-LSRRFRSLKLWMVLRLYGSENLRNFIRDHVNLAKHFEDYVAQD----PSFEVVTTRYFSLVCFRLAPVDGDEDQ  474 (539)
T ss_pred             ccCCC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceEEEEEEecCCCCCHHH
Confidence             0011 112345566777777776665554444   4555555544432    22222233344555555532110 0  


Q ss_pred             --hhHHHHHHHHHHCC-eEeccC---CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          297 --VSAYDICLKMKERG-ILAKPT---HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       297 --~~~~~~~~~l~~~G-i~v~~~---~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                        ....++.+.+.+.| +++++.   +..+||+++. ...++++++.+++.|.+..+ ++.++.
T Consensus       475 ~~~ln~~l~~~l~~~G~~~vs~t~~~g~~~lR~~i~n~~T~~~dv~~~~~~i~~~a~-~~~~~~  537 (539)
T PLN02590        475 CNERNRELLAAVNSTGKIFISHTALSGKFVLRFAVGAPLTEEKHVTEAWQIIQKHAS-KFTRND  537 (539)
T ss_pred             HHHHHHHHHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-HhcccC
Confidence              12345667777677 444443   3578999763 45578999999999999888 776654

>KOG0053 consensus Cystathionine beta-lyases/cystathionine gamma-synthases [Amino acid transport and metabolism]

Probab=99.64  E-value=2.7e-14  Score=129.42  Aligned_cols=199  Identities=16%  Similarity=0.144  Sum_probs=145.1

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|....+++.+++..|..+++.++||..|+..++..+     .+.|     ++|+.....|.|..........
T Consensus        69 ~~Ysr~~nPt~~~le~~iaal~ga~~~l~fsSGmaA~~~al~~L-----~~~g-----~~iV~~~~~Y~gT~~~l~~~~~  138 (409)
T KOG0053|consen   69 YDYSRSGNPTRDVLESGIAALEGAAHALLFSSGMAAITVALLHL-----LPAG-----DHIVATGDVYGGTLRILRKFLP  138 (409)
T ss_pred             cccccCCCCchHHHHHHHHHHhCCceEEEecccHHHHHHHHHHh-----cCCC-----CcEEEeCCCcccHHHHHHHHHH
Confidence            45556779999999999999999999999999999999999988     5666     9999999999775444332221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..         .....++..+++++++++++   +++++|++|++.||...+.+    +++|+++|+++|+++++|++++
T Consensus       139 ~~---------gie~~~vd~~~~~~~~~~i~---~~t~~V~~ESPsNPll~v~D----I~~l~~la~~~g~~vvVDnTf~  202 (409)
T KOG0053|consen  139 KF---------GGEGDFVDVDDLKKILKAIK---ENTKAVFLESPSNPLLKVPD----IEKLARLAHKYGFLVVVDNTFG  202 (409)
T ss_pred             Hh---------CceeeeechhhHHHHHHhhc---cCceEEEEECCCCCcccccc----HHHHHHHHhhCCCEEEEeCCcC
Confidence            11         12234444446667777776   58999999999999999998    9999999999999999999987


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccCC-ccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGGG-VIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G-~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +.      ...+.+....|++  |.+|-++|. =+=+|.++.+ .++...++.......+..+++.+.-....++
T Consensus       203 ~p------~~~~pL~lGADIV~hSaTKyi~Ghsdvi~G~iv~n~~~~~~~l~~~~~~lg~~~~p~~~~ll~Rglk  271 (409)
T KOG0053|consen  203 SP------YNQDPLPLGADIVVHSATKYIGGHSDVIGGSVVLNSEELASRLKFLQEDLGWCEDPFDLFLLSRGLK  271 (409)
T ss_pred             cc------cccChhhcCCCEEEEeeeeeecCCcceeeeEEecCcHHHHHHHHHHHHHhcCCCCHHHHHHHhcCcc
Confidence            43      2333444556776  677999972 2133456665 6777777654444455667777665555444

>PF12897 Aminotran_MocR: Alanine-glyoxylate amino-transferase; InterPro: IPR024551 This entry represents a family of putative aminotransferases

Probab=99.63  E-value=6.6e-14  Score=124.66  Aligned_cols=307  Identities=14%  Similarity=0.123  Sum_probs=167.3

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHH-HHHHHHHcccc---cccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVET-ALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~-al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..+..-++.+-+++++|.  ++++...|.|--+.. ++..+...+..   .+....+.-+.+++.|+|-.+......++
T Consensus        66 G~l~Gipe~r~l~a~llgv~~~~viv~gNSSL~lM~d~i~~a~~~G~~~~~~PW~~~~~vKfLCPvPGYDRHFai~E~~G  145 (425)
T PF12897_consen   66 GGLDGIPEARELFAELLGVPPENVIVGGNSSLNLMHDTISRAMLHGVPGSETPWCKEEKVKFLCPVPGYDRHFAITEHFG  145 (425)
T ss_dssp             S-SS--HHHHHHHHHHHTS-GGGEEE-SS-HHHHHHHHHHHHHHH--TT-SS-GGGSS--EEEEEES--HHHHHHHHHCT
T ss_pred             CccCChHHHHHHHHHHhCCCHHHEEEeccchHHHHHHHHHHHHhcCCCCCCCCchhccCceEEecCCCchHHHHHHHhhC
Confidence            4466677888888888754  578777777654433 22222222211   12223345789999999955544443332


Q ss_pred             CCccccccCCCCCCCceeccCC----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHH-HHhcCCEEE
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL-CSKYNILMI  166 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l-~~~~~i~li  166 (374)
                                   ..+..+|.+    |++.+|+.+.+ .+.+|++++.|.++|+.++..|.+..++|+.+ ....|..|+
T Consensus       146 -------------iemi~VpM~~dGPDmD~Ve~LV~~-D~svKGiWcVP~ySNPtG~tySde~vrrlA~m~~AA~DFRI~  211 (425)
T PF12897_consen  146 -------------IEMIPVPMTEDGPDMDMVEELVAE-DPSVKGIWCVPKYSNPTGITYSDEVVRRLAAMKTAAPDFRIF  211 (425)
T ss_dssp             --------------EEEEEEEETTEE-HHHHHHHTHT-STTEEEEEE-SSS-TTT-----HHHHHHHHHS--SSTT-EEE
T ss_pred             -------------cEEEecCCCCCCCCHHHHHHHHhc-CCccceEEeCCCccCCCCccCCHHHHHHHhcCCcCCcCeEEE
Confidence                         223333332    89999987754 36899999999655544455599999999999 557999999


Q ss_pred             EeccccC--CcccccCcc---c---ccCCCCCc----EEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHH
Q 017259          167 ADEIQSG--LARSGRMLA---S---DWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       167 ~Dea~~~--~~~~g~~~~---~---~~~~~~~d----~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      +|++|+-  +........   +   ....-+||    +.|.||-..+|. +++++.++++-++.+.......+.+.+-+.
T Consensus       212 WDNAY~vHhL~~~~~~~~~~nil~~~~~AGnpdrv~~F~STSKITf~Ga-Gva~~aaS~~Nl~~~~~~~~~~tIgpdKvN  290 (425)
T PF12897_consen  212 WDNAYAVHHLYDEEPRDALLNILDACAKAGNPDRVYVFASTSKITFPGA-GVAFFAASEANLAWIKKHLSVQTIGPDKVN  290 (425)
T ss_dssp             EE-TTTT-BSSSSSS------HHHHHHHTT-TTSEEEEEESTTTS-TTS-S-EEEEE-HHHHHHHHHHHHHH-S---HHH
T ss_pred             eecCceEeeccccccchhhhHHHHHHHHcCCCCeEEEEecccccccCCc-ceeeeecCHHHHHHHHHHhcCceeCccHHH
Confidence            9999982  311111100   1   01112455    348899777777 889999998877777655445566667777


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHH-------HHHHHHHHHHHH-hCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHH
Q 017259          235 SAVAIASLDVIRDEKLAERSAHLG-------EELRQHLFKIQQ-QFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       235 ~~aa~~al~~~~~~~~~~~~~~~~-------~~~~~~l~~~~~-~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      |..-..-++..+ .++.+++++.+       +...+.|++-.. .. ++..++.+. |.|++++..+.    .+..+++.
T Consensus       291 QLRHvrff~d~~-gGv~aHM~kHa~il~PKF~~V~~~L~~~L~~~~-~ia~Wt~P~GGYFIsld~~~G----~AkrvV~l  364 (425)
T PF12897_consen  291 QLRHVRFFKDAE-GGVRAHMRKHAAILRPKFEAVLEILEEELGDGL-GIASWTKPKGGYFISLDVLDG----TAKRVVEL  364 (425)
T ss_dssp             HHHHHHHHHSHH-THHHHHHHHHHHHHHHHHHHHHHHHHHHHGTGG-TSEEE---SBSS-EEEEESTT-----HHHHHHH
T ss_pred             HHHHHHHhcChh-hHHHHHHHHHHHHHhhhHHHHHHHHHHhcCCCC-CeeEecCCCCceEEEEecCCC----hHHHHHHH
Confidence            665554444321 14555555543       444444444433 32 456666655 56667777665    79999999


Q ss_pred             HHHCCeEeccCC----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKERGILAKPTH----------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~Gi~v~~~~----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+.||.+++.+          ...|||+|++. +.+|++.+++.+..+.+
T Consensus       365 akeAGV~LT~AGAtfPyg~DP~D~nIRiAPS~P-~leel~~Am~~~~~cv~  414 (425)
T PF12897_consen  365 AKEAGVALTPAGATFPYGKDPRDSNIRIAPSYP-SLEELETAMDVFATCVK  414 (425)
T ss_dssp             HHHTTEE---TTTTSGGG--TTS-EEEE--SSS--HHHHHHHHHHHHHHHH
T ss_pred             HHHhCceeCCCCCCCCCCCCCCCCcEEecCCCC-CHHHHHHHHHHHHHHHH
Confidence            999999998842          57999998865 78899999999876665

; PDB: 3D6K_C 3EZ1_A 3PPL_B.

>cd00611 PSAT_like Phosphoserine aminotransferase (PSAT) family

Probab=99.61  E-value=1.9e-14  Score=133.84  Aligned_cols=281  Identities=11%  Similarity=0.022  Sum_probs=171.0

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCC-hHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC-CCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNT-GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-HGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~-gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y-hg~~~~~~~~~~~~~   95 (374)
                      ..+++.++.++++++.   ++++|++| +|++++.++..+...  .++|     ++|++  +.| |.....+...+    
T Consensus        44 ~~~~~~r~~l~~l~~~~~~~~vvf~~gs~T~a~~~~~~~l~~~--~~~~-----~~i~~--g~~~~~~~~~a~~~g----  110 (355)
T cd00611          44 AIVNEAESDLRELLNIPDNYKVLFLQGGATGQFAAVPLNLLGD--KGTA-----DYVVT--GAWSAKAAKEAKRYG----  110 (355)
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhcCCC--CCeE-----EEEEC--CHHHHHHHHHHHhcC----
Confidence            5577889999998874   36888877 999999999888311  1233     55543  222 11100111111    


Q ss_pred             ccccCCCCCCCceeccC------CC-HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           96 AIRGFGPLLPGHLKVDF------GD-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~------~d-~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                               ..+..++.      .+ .+..+..++   +++++|.+.+..+.+|...+         ++++.||+++++|
T Consensus       111 ---------~~~~~~~~~~~g~~~~~~~~~~~~~~---~~~~lV~~~h~~t~tG~~~~---------~i~~~~g~~~~VD  169 (355)
T cd00611         111 ---------GVVVIVAAKEEGKYTKIPDVETWDLA---PDAAYVHYCSNETIHGVEFD---------EVPDTGGVPLVAD  169 (355)
T ss_pred             ---------CCcEEEecccccCCCCCCCHhhcCCC---CCCCEEEEeCCcccccEEcc---------eecccCCCeEEEE
Confidence                     11111111      12 222222232   57889999898888887632         4556699999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCC-----------CCC-CCCCCHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----------HGS-TFGGNPLASA  236 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~  236 (374)
                      .+++ ++  +.++..+.++  .++.+--|.+| .. ++|+++.++++.+++.+..           ... .+.++..+..
T Consensus       170 a~qs-~g--~~~idv~~~~--~~~ss~~K~lG-P~-G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Tpn~~~i~  242 (355)
T cd00611         170 MSSN-IL--SRPIDVSKFG--VIYAGAQKNLG-PA-GVTVVIVRKDLLGKARKITPSMLNYKTHADNNSLYNTPPTFAIY  242 (355)
T ss_pred             cccc-cc--CCCCCHHHhC--EEEeecccccC-CC-ceEEEEECHHHHhhcccCCCCcccHHHHHhcCCCCCCChHHHHH
Confidence            9998 21  1222333222  23323448775 44 6788999998887665421           011 2355777888


Q ss_pred             HHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          237 VAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       237 aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      +..++++++.+.    ++.++.+++.+++++.|+++...+..........+..+.|.++...   ...++.+.+.+.|+.
T Consensus       243 ~L~aal~~l~~~gg~e~i~~~~~~l~~~l~~~l~~~~gl~~~~~~~~~rs~~vvsf~~~~~~---l~~~~~~~~~r~G~~  319 (355)
T cd00611         243 MMGLVLKWLKEQGGVEAMEKRNRQKAQLLYDTIDNSNGFYRGPVDKRARSRMNVPFRLGKEE---LEKEFLKEAEAAGMI  319 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCccccccCCCHHHcCceEEEEEcCChh---hhHHHHHHHHHCCCc
Confidence            888899987654    4556666777777777776521110111101122344666665421   235666788899998


Q ss_pred             eccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          313 AKPTH--DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       313 v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +.+++  .+.+|+++...+|.+|+++++++|+++-
T Consensus       320 ~~~~~~~~g~vR~S~~~~nt~edi~~l~~al~~~~  354 (355)
T cd00611         320 GLKGHRSVGGIRASIYNALSLEGVQALADFMKEFQ  354 (355)
T ss_pred             ccCCCcccCeEEEEccCCCCHHHHHHHHHHHHHHh
Confidence            66654  4789999999999999999999998753

This family belongs to pyridoxal phosphate (PLP)-dependent aspartate aminotransferase superfamily (fold I). The major group in this CD corresponds to phosphoserine aminotransferase (PSAT). PSAT is active as a dimer and catalyzes the conversion of phosphohydroxypyruvate to phosphoserine.

>PRK15029 arginine decarboxylase; Provisional

Probab=99.61  E-value=4.7e-13  Score=132.60  Aligned_cols=307  Identities=15%  Similarity=0.100  Sum_probs=181.6

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHH-HHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Ccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEG-VETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a-~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~   97 (374)
                      .....+.++..++.+|.++.+|..|||++ +.+++.++     +.+|     |+|++.+++ |-+...+..+++ .|.|.
T Consensus       204 ~G~I~eAq~~aA~~fgA~~t~FlvNGST~gn~a~i~a~-----~~~g-----d~Vlv~RN~-HKSv~~al~L~ga~Pvyl  272 (755)
T PRK15029        204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC-----MTDN-----DVVVVDRNC-HKSIEQGLILTGAKPVYM  272 (755)
T ss_pred             CcHHHHHHHHHHHHhCCCcEEEEeCChhHHHHHHHHHh-----cCCC-----CEEEeeccc-HHHHHHHHHHcCCeEEEe
Confidence            44455677777778899987665555554 55444544     6778     999999999 666555655554 45544


Q ss_pred             ccCCCCCCCceeccCC----CHHHHHHHHHhcCCcE--------EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           98 RGFGPLLPGHLKVDFG----DITALEKIFKESGDQI--------AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~----d~~~le~~l~~~~~~~--------~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                      .....  .-....+.+    +++.++++|++++...        ++++++|.+  .|.+.+    +++|+++|++++++|
T Consensus       273 ~P~~~--~~Gi~~~i~~~~~~~e~i~~~l~~~p~~k~~~~~~~~avvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~l  344 (755)
T PRK15029        273 VPSRN--RYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNCTY--DGVCYN----AKEAQDLLEKTSDRL  344 (755)
T ss_pred             ccccc--ccCCccCCCccccCHHHHHHHHHhCchhhhccccCceEEEEECCCC--cceeeC----HHHHHHHHHhcCCeE
Confidence            32111  001111111    4889999998775433        455555544  377777    999999999999999


Q ss_pred             EEeccccCCcccccCccc-ccC-----C-CCCc-EEEec--ccccCCccchhhheeCHH--HH--hhcCCC-CCCCCCCC
Q 017259          166 IADEIQSGLARSGRMLAS-DWE-----E-VRPD-MVILG--KALGGGVIPVSAVLADKE--VM--LCIQPG-EHGSTFGG  230 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~-~~~-----~-~~~d-~~s~s--K~~~~G~~~~G~~~~~~~--~~--~~~~~~-~~~~~~~~  230 (374)
                      ++||||+++......+.. ...     . ..+| +++-|  |.+++ +...+++..+..  .+  +++... ...+|-++
T Consensus       345 lvDEAhGah~~F~~~~p~~sa~~~~~~~~~Gad~~vvqStHKtL~a-lTQaS~LHv~~~~~~id~~r~~~~l~~~qSTSP  423 (755)
T PRK15029        345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNA-LSQASYIHVREGRGAINFSRFNQAYMMHATTSP  423 (755)
T ss_pred             EEECccccccccCccccccccccccccccCCCceEEEEchhhcccc-hhhhhhheeCCCccccCHHHHHHHHHHHcCCCc
Confidence            999999863222222221 111     1 3467 77777  76653 212233444222  11  122211 13345577


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhC----CCce---------------------------
Q 017259          231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQF----PNYV---------------------------  276 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~---------------------------  276 (374)
                      +-+.++..-.+.+.+..   +...++..+....+++.+.++...+    .+++                           
T Consensus       424 SY~LmASLD~ar~~m~~~~G~~l~~~~i~~~~~~r~~l~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~  503 (755)
T PRK15029        424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFFKPWNKEVVTDPQTGKTYDFADAPTKLL  503 (755)
T ss_pred             HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhccccccccccccccccCccccccccccccccccccchhhh
Confidence            77777777666666653   2455666667777777776553210    0000                           


Q ss_pred             -----eeEE-------E-----------EeeeEEEEeccC-CC------chhHHHHHHHHHHCCeEeccCCCCEEEEecC
Q 017259          277 -----KEVR-------G-----------RGLFNAVEFDKT-AL------PVSAYDICLKMKERGILAKPTHDTIVRLTPP  326 (374)
Q Consensus       277 -----~~~~-------~-----------~g~~~~~~~~~~-~~------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~  326 (374)
                           ...-       +           ...-+.+..+.. ..      |..+.++.+.|.++||.+.-.+...+-+.++
T Consensus       504 ~~~~~~~~~~~~~~~~g~~~~~~~~~~lDp~Klti~~~~~g~sG~~~~~gip~~~l~~~L~~~gI~~E~~~~~~vL~l~s  583 (755)
T PRK15029        504 TTVQDCWVMHPGESWHGFKDLPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLFS  583 (755)
T ss_pred             ccccceeeecccccccCcccccccccccCCceEEEEcCCCCCCCcccccCCcHHHHHHHHHHcCCEEEecCCCeEEEEeC
Confidence                 0000       0           011112222111 10      1234489999988899999988888888778


Q ss_pred             CCCCHHHHHHHHHHHHHHHh
Q 017259          327 LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ...+++++++++++|.++-+
T Consensus       584 ~g~t~~~~~~L~~aL~~~~~  603 (755)
T PRK15029        584 MGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_pred             CCCCHHHHHHHHHHHHHHHH
Confidence            88999999999999987754

>PF01276 OKR_DC_1: Orn/Lys/Arg decarboxylase, major domain; InterPro: IPR000310 Pyridoxal-dependent decarboxylases are bacterial proteins acting on ornithine, lysine, arginine and related substrates []

Probab=99.60  E-value=3.5e-14  Score=131.35  Aligned_cols=292  Identities=17%  Similarity=0.176  Sum_probs=165.0

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChH-HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Cccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEA   96 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs-~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~   96 (374)
                      +.....+.++.+++.+|.++.+|..+|| .++.+++.++     +.+|     |+|++.+.+ |-+...+..+++ .|.|
T Consensus        64 p~G~I~eAe~~aA~~fGAd~t~flvnGsT~g~~a~i~a~-----~~~g-----d~VLv~RN~-HkSv~~alil~ga~Pvy  132 (417)
T PF01276_consen   64 PEGIIKEAEELAARAFGADKTFFLVNGSTSGNQAMIMAL-----CRPG-----DKVLVDRNC-HKSVYNALILSGAIPVY  132 (417)
T ss_dssp             TBTHHHHHHHHHHHHHTESEEEEESSHHHHHHHHHHHHH-----TTTT-----CEEEEETT---HHHHHHHHHHTEEEEE
T ss_pred             CccHHHHHHHHHHHhcCCCeEEEEecCchHHHHHHHHHh-----cCCC-----CEEEEcCCc-HHHHHHHHHHcCCeEEE
Confidence            3445677888888899999886665555 4555555555     6778     999999999 565555555544 4444


Q ss_pred             cccCCCCCCCc-eeccCC--CHHHHHHHHHhcCCcEE---EEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           97 IRGFGPLLPGH-LKVDFG--DITALEKIFKESGDQIA---GFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~--d~~~le~~l~~~~~~~~---~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ....... .++ ..++..  +.+.++++|+++++..+   +++++|.+  .|.+.+    +++|.++|++++++|++|||
T Consensus       133 i~p~~~~-~gi~~~i~~~~~~~~~i~~~l~~~p~~k~~~~vvlt~PTY--~Gv~~d----i~~I~~~~h~~~~~llvDEA  205 (417)
T PF01276_consen  133 IPPEDNE-YGIIGGISPDEFNEEDIEEALKEHPDAKAPRLVVLTSPTY--YGVCYD----IKEIAEICHKHGIPLLVDEA  205 (417)
T ss_dssp             EEEEE-T-TS-BEEB-GGGGSHHHHHHHHHHCTTCHCESEEEEESS-T--TSEEE-----HHHHHHHHCCTECEEEEE-T
T ss_pred             ecCCccc-cCCccCCChhhhhHHHHHHHHHhCccccCceEEEEeCCCC--CeEEEC----HHHHHHHhcccCCEEEEEcc
Confidence            4322110 111 111110  34899999999876555   66666644  488888    99999999999999999999


Q ss_pred             ccCC-cccccCcccccCCCCCc-------EEEec--ccccCCccchhhheeCHHH---HhhcCCC-CCCCCCCCCHHHHH
Q 017259          171 QSGL-ARSGRMLASDWEEVRPD-------MVILG--KALGGGVIPVSAVLADKEV---MLCIQPG-EHGSTFGGNPLASA  236 (374)
Q Consensus       171 ~~~~-~~~g~~~~~~~~~~~~d-------~~s~s--K~~~~G~~~~G~~~~~~~~---~~~~~~~-~~~~~~~~~~~~~~  236 (374)
                      |++. ...  .+.........|       +++-|  |.+++ +...+++..+...   .+++... ...+|-+++-+.++
T Consensus       206 hGah~~F~--~lp~~a~~~gad~~~~~~~~vvqS~HKtL~a-ltQts~lh~~~~~~v~~~~~~~~l~~~~TTSPSY~lmA  282 (417)
T PF01276_consen  206 HGAHFGFH--PLPRSALALGADRPNDPGIIVVQSTHKTLPA-LTQTSMLHVKGDRIVDHERVNEALSMHQTTSPSYPLMA  282 (417)
T ss_dssp             T-TTGGCS--GGGTTCSSTTSS-CTSBEEEEEEEHHHHSSS--TT-EEEEEETCCCTTHHHHHHHHHHHS-SS--HHHHH
T ss_pred             ccccccCC--CCccchhhccCccccccceeeeechhhcccc-cccceEEEecCCCcccHHHHHHHHHHHcCCChHHHHHH
Confidence            9863 222  223334445566       77777  76653 2133344443321   1222211 13446677888888


Q ss_pred             HHHHHHHHH-hhh--cHHHHHHHHHHHHHHHHHHHHHhCCCcee----eEEE-------------------------Eee
Q 017259          237 VAIASLDVI-RDE--KLAERSAHLGEELRQHLFKIQQQFPNYVK----EVRG-------------------------RGL  284 (374)
Q Consensus       237 aa~~al~~~-~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~-------------------------~g~  284 (374)
                      ..-.+.+++ ..+  .+.++..+..+.++++++... .+..+..    ....                         .+.
T Consensus       283 SlD~a~~~m~~~~G~~l~~~~i~~a~~~R~~i~~~~-~~~~~~~~~~~~v~~~~~~~~~~~~~whgf~~~~~~~~~lDP~  361 (417)
T PF01276_consen  283 SLDVARAQMEEEEGRELLEEAIELAEEFRKKINRLN-DIWGFKVLGPEDVGGEGCWDLDPGENWHGFEGLADDYYMLDPT  361 (417)
T ss_dssp             HHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHC-CT-SSEESS-SEECTCCGCB--TT-TTT--TT--TTSEEE-TT
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHhcC-CCceEecCCccccCCccccccCccccchhchhcccCccccCCc
Confidence            777777777 332  567777788888888886532 1111110    0111                         111


Q ss_pred             eEEEEecc-------CCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHH
Q 017259          285 FNAVEFDK-------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN  332 (374)
Q Consensus       285 ~~~~~~~~-------~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e  332 (374)
                      -+.+..+.       ...|.++..+.++|.++||.+.-.+...+-+-++...|++
T Consensus       362 K~ti~~pG~~~~g~~~~~Gi~g~~~~~~L~~~~I~~Ek~d~~~vL~l~t~G~t~~  416 (417)
T PF01276_consen  362 KLTINTPGIDADGELSELGIPGYIVEKYLREHGIQVEKTDLYNVLFLFTIGDTKE  416 (417)
T ss_dssp             EEEEE-STBETTSSB-SS---HHHHHHHHHHTTEE-SEEESSEEEEE--TTS-HH
T ss_pred             EEEEEccCcCcCCcccccCCCHHHHHHHHHHcCCEEEeccCccEEEEecCCCCCC
Confidence            22222211       1125678899999999999998877777766655555543

One of the regions of sequence similarity contains a conserved lysine residue, which is the site of attachment of the pyridoxal-phosphate group.; GO: 0003824 catalytic activity; PDB: 1C4K_A 1ORD_A 2X3L_B 3Q16_C 3N75_A 2VYC_D.

>PLN02263 serine decarboxylase

Probab=99.60  E-value=2e-12  Score=121.50  Aligned_cols=276  Identities=15%  Similarity=0.054  Sum_probs=172.9

Q ss_pred             HHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           25 VFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        25 ~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ++-++++++++.+    .-++|+|||+++..|+.++|.+.   +      +-+++.+-.-|.....+..+.+-.      
T Consensus       137 ~Vi~wla~L~g~p~~~~~G~vtsGGTEaNL~Al~aARe~~---~------~~vvy~S~~aH~Sv~KAa~llgi~------  201 (470)
T PLN02263        137 GVLDWFARLWEIEKNEYWGYITNCGTEGNLHGILVGREVF---P------DGILYASRESHYSVFKAARMYRME------  201 (470)
T ss_pred             HHHHHHHHHhCCCCCCCeEEEeCcHHHHHHHHHHHHHhhc---C------CcEEEEcCCccHHHHHHHHhcCCc------
Confidence            3555666666653    36889999999999999998642   1      223444444466655555554432      


Q ss_pred             CCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC-----EEEEecc
Q 017259          101 GPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI-----LMIADEI  170 (374)
Q Consensus       101 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i-----~li~Dea  170 (374)
                            +..+|.+     |+++|+++|.+...++.+|+.+-...++|.+-|    +++|.++|++||+     ++++|.+
T Consensus       202 ------~~~Vp~d~~g~mD~~aL~~aI~~d~~~P~iVvataGTT~~GAiDp----i~eIa~i~~~~g~~~~~iwlHVDAA  271 (470)
T PLN02263        202 ------CVKVDTLVSGEIDCADFKAKLLANKDKPAIINVNIGTTVKGAVDD----LDLVIKTLEECGFSQDRFYIHCDGA  271 (470)
T ss_pred             ------ceEeccCCCCcCcHHHHHHHHHhCCCCcEEEEEEecCCCCcCCCC----HHHHHHHHHHcCCccCCeeEEEecc
Confidence                  2223322     899999999865445666666666677898888    9999999999997     9999999


Q ss_pred             ccCCcc----cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----CCCCCCC--CHHHHHH
Q 017259          171 QSGLAR----SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGG--NPLASAV  237 (374)
Q Consensus       171 ~~~~~~----~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----~~~~~~~--~~~~~~a  237 (374)
                      ++|+..    ....+.+   ....|-++++  |.++..+ +.|.++.+++....+....     ...+..+  +......
T Consensus       272 ~GG~~lPf~~~~~~~df---~~~vDSIsvD~HK~l~~P~-~cgvll~R~~~~~~~~~~~~Yl~~~d~ti~gSR~g~~al~  347 (470)
T PLN02263        272 LFGLMMPFVKRAPKVTF---KKPIGSVSVSGHKFVGCPM-PCGVQITRMEHINVLSSNVEYLASRDATIMGSRNGHAPIF  347 (470)
T ss_pred             chhhHhhhcccccccCC---CcCccEEEECCccccCCCc-CEEEEEEehhhHhhhccChHhhCCCCCCcCCCCCcHHHHH
Confidence            997522    1111111   1124555555  8888777 8888888876554443210     1112222  3234566


Q ss_pred             HHHHHHHHhhhcHHHHHH---HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          238 AIASLDVIRDEKLAERSA---HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       238 a~~al~~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      ++.+++.+..+++.+.++   ++.+++.+++++.     ++.....+..+.+.|..+.       ++    +..+|..+.
T Consensus       348 lW~~L~~~G~~G~~~~i~~~~~~A~~l~~~l~~~-----g~~~~~~p~s~~V~f~~p~-------~~----~~~~gW~L~  411 (470)
T PLN02263        348 LWYTLNRKGYRGFQKEVQKCLRNAHYLKDRLREA-----GISAMLNELSSTVVFERPK-------DE----EFVRRWQLA  411 (470)
T ss_pred             HHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCeEEeCCCceEEEEecCc-------hH----HhhcceEEc
Confidence            778888777665554444   4556666666554     2322233444555543332       11    134677777


Q ss_pred             cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .. ++.+++......+.+.++++++.|++..+
T Consensus       412 ~~-~~~~Hivvmphv~~~~id~fi~DL~~~~~  442 (470)
T PLN02263        412 CQ-GNIAHVVVMPSVTIEKLDYFLKELVEKRS  442 (470)
T ss_pred             cC-CCcEEEEEcCCCCHHHHHHHHHHHHHHHh
Confidence            65 45688887776788999999999988877

>cd01494 AAT_I Aspartate aminotransferase (AAT) superfamily (fold type I) of pyridoxal phosphate (PLP)-dependent enzymes

Probab=99.59  E-value=2.7e-14  Score=118.34  Aligned_cols=157  Identities=24%  Similarity=0.328  Sum_probs=111.3

Q ss_pred             HHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc-ccccccCCcccccc
Q 017259           23 FPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-AAISMSCDNEAIRG   99 (374)
Q Consensus        23 ~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~-~~~~~~~~~~~~~~   99 (374)
                      ++++++++++++  +.+++++++|+++|+..+++.+.     ++|     ++|++.++.|++... .......       
T Consensus         2 ~~~~~~~l~~~~~~~~~~~~~~~~~t~a~~~~~~~~~-----~~~-----~~v~~~~~~~~~~~~~~~~~~g~-------   64 (170)
T cd01494           2 LEELEEKLARLLQPGNDKAVFVPSGTGANEAALLALL-----GPG-----DEVIVDANGHGSRYWVAAELAGA-------   64 (170)
T ss_pred             HHHHHHHHHHHcCCCCCcEEEeCCcHHHHHHHHHHhC-----CCC-----CEEEEeecccceehhhHHHhcCC-------
Confidence            467899999999  88899999999999999999883     345     899999999988763 2221111       


Q ss_pred             CCCCCCCceeccCC-------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259          100 FGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus       100 ~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                            .+..++.+       +.+.+++..  ..+++++++++++++++|...+    +++|.++|+++|+++|+|++|+
T Consensus        65 ------~~~~v~~~~~~~~~~~~~~~~~~~--~~~~~~~v~~~~~~~~~g~~~~----~~~l~~~~~~~~~~li~D~a~~  132 (170)
T cd01494          65 ------KPVPVPVDDAGYGGLDVAILEELK--AKPNVALIVITPNTTSGGVLVP----LKEIRKIAKEYGILLLVDAASA  132 (170)
T ss_pred             ------EEEEeccCCCCccchhhhhhhhcc--ccCceEEEEEecCcCCCCeEcC----HHHHHHHHHHcCCEEEEecccc
Confidence                  11111111       122343322  2368999999999999998887    7999999999999999999999


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeC
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD  212 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~  212 (374)
                      ++......  .......+|+++.|  |.+++ . ++|+++.+
T Consensus       133 ~~~~~~~~--~~~~~~~~d~~~~s~~K~~~~-~-~~G~l~~~  170 (170)
T cd01494         133 GGASPAPG--VLIPEGGADVVTFSLHKNLGG-E-GGGVVIVK  170 (170)
T ss_pred             cccccccc--cccccccCCEEEEEcccccCC-C-ceEEEEeC
Confidence            65433211  12223457777555  99987 5 77887653

PLP combines with an alpha-amino acid to form a compound called a Schiff base or aldimine intermediate, which depending on the reaction, is the substrate in four kinds of reactions (1) transamination (movement of amino groups), (2) racemization (redistribution of enantiomers), (3) decarboxylation (removing COOH groups), and (4) various side-chain reactions depending on the enzyme involved. Pyridoxal phosphate (PLP) dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalyzed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis

>COG1103 Archaea-specific pyridoxal phosphate-dependent enzymes [General function prediction only]

Probab=99.59  E-value=2.2e-12  Score=109.04  Aligned_cols=295  Identities=18%  Similarity=0.192  Sum_probs=184.4

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..|+..++-+.|++++|.+.+-+|+|+-+|-.++|..+     .++|     |-|++.... |-.+..+.-..+......
T Consensus        59 ~kPpI~~F~~dlaeFlg~D~~R~t~GARe~KfavMhal-----~~~g-----d~vV~D~~a-HYttyvAAEragl~v~eV  127 (382)
T COG1103          59 TKPPIKDFLEDLAEFLGMDEVRVTAGAREAKFAVMHAL-----CKEG-----DWVVVDSLA-HYTTYVAAERAGLNVAEV  127 (382)
T ss_pred             cCCcHHHHHHHHHHHhCCceeeecccchhhHHHHHHHh-----ccCC-----CEEEEcCcc-hHHHHHHHHhcCCeEEec
Confidence            45677788888999999999999999999999999888     6677     888777665 333333222222111110


Q ss_pred             cCCCCCCCceeccCCCHHHH----HHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           99 GFGPLLPGHLKVDFGDITAL----EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~l----e~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      +-.. .+....    +++..    ++..++.++.+++.++..+.++.|++.+    -++++++|+++|++++...+|+ .
T Consensus       128 p~tg-~Pey~i----~~e~y~~viee~~~~~g~~~~lallTh~Dg~YGNl~D----akkva~ic~e~gvPlllN~AYt-~  197 (382)
T COG1103         128 PNTG-YPEYKI----TPEGYAEVIEEVKDEGGDPPALALLTHVDGEYGNLAD----AKKVAKICREYGVPLLLNCAYT-V  197 (382)
T ss_pred             CCCC-CCceEe----cHHHHHHHHHHHHhccCCCceEEEEeccCCCcCCchh----hHHHHHHHHHcCCceEeeccee-e
Confidence            0000 010111    45544    4444444466889999999999999998    9999999999999999999998 3


Q ss_pred             cccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----------CC-CCCCCCHHHHHHHHH
Q 017259          175 ARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----------HG-STFGGNPLASAVAIA  240 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~-~~~~~~~~~~~aa~~  240 (374)
                      |   .. ..+...+.+|++.-|  |++++.- |+|.+..++++.+..-...           .+ +..+.+.+.+.|   
T Consensus       198 G---rm-pvs~ke~g~DFiVgSGHKsmAAs~-PiGvl~~~eE~ae~V~r~Sg~~~~~KEvellGCT~rGapivTlmA---  269 (382)
T COG1103         198 G---RM-PVSGKEIGADFIVGSGHKSMAASA-PIGVLAMSEEWAEIVLRRSGRAFPKKEVELLGCTVRGAPIVTLMA---  269 (382)
T ss_pred             c---cc-cccccccCCCEEEecCccchhccC-CeeEEeehhHHHHHHHhhcccccccceeeeecccccCchHHHHHh---
Confidence            2   21 334456778888666  8998776 8999999988776643211           11 112333333333   


Q ss_pred             HHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhHHHHHHHHHHCCeE-
Q 017259          241 SLDVIRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGIL-  312 (374)
Q Consensus       241 al~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~-  312 (374)
                      ++-...+.  .|-+.+ +..+++.+.|+.+....  ....-+.+--++.|+.|...     .....--+++.|.++||. 
T Consensus       270 SfP~V~eRVkrWdeEv-~kaR~fv~elEkigg~~--qlG~rPk~HdLm~Fetp~f~eIakk~~r~gyFlY~ELK~RgI~G  346 (382)
T COG1103         270 SFPHVVERVKRWDEEV-EKARWFVAELEKIGGVK--QLGERPKNHDLMKFETPVFHEIAKKHKRKGYFLYEELKKRGIHG  346 (382)
T ss_pred             cCHHHHHHHHHHHHHH-HHHHHHHHHHHHhhhHH--HhCCCCcccceeeecCchHHHHHHhCcCCceeeHHHHHhcCccc
Confidence            22222111  223333 45677888888876321  12222222233444433210     011223467778888764 


Q ss_pred             eccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|+...++.++. +.+++|+++..+++++++++
T Consensus       347 I~~G~Tk~~K~sv-yGl~~Eqve~V~~afkeI~e  379 (382)
T COG1103         347 IQPGQTKYFKLSV-YGLSWEQVEYVVDAFKEIAE  379 (382)
T ss_pred             cccCceeEEEEEe-ecCCHHHHHHHHHHHHHHHH
Confidence            5666667888873 47899999999999999987

>PRK13578 ornithine decarboxylase; Provisional

Probab=99.53  E-value=5.1e-12  Score=124.14  Aligned_cols=307  Identities=12%  Similarity=0.048  Sum_probs=173.3

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChH-HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccC-Cccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSC-DNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs-~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~-~~~~   96 (374)
                      .....+-++..++.+|.++.+|..||| .+|.+++.++     +.+|     |.|++.+++ |-+... ++.+++ .|.|
T Consensus       173 eG~i~eAq~~AA~~fgAd~tyFlvNGTS~gn~a~i~a~-----~~~G-----d~VLvdRN~-HKSv~hgaLiLsGa~PVY  241 (720)
T PRK13578        173 EGAAKDAQKHAAKVFNADKTYFVLNGTSASNKVVTNAL-----LTPG-----DLVLFDRNN-HKSNHHGALIQAGATPVY  241 (720)
T ss_pred             ChHHHHHHHHHHHHhCCCceEEEeCChhHHHHHHHHHh-----cCCC-----CEEEeeccc-HHHHHHHHHHHcCCeEEE
Confidence            344566777777788999875555554 5555555555     6788     999999999 555443 344443 4555


Q ss_pred             cccCCCCCCCc-eeccCC--CHHHHHHHHHhcCCc-------EE-EEEEccccCCCCcccCChhHHHHHHHH-HHhcCCE
Q 017259           97 IRGFGPLLPGH-LKVDFG--DITALEKIFKESGDQ-------IA-GFLFEPIQGEAGVIIPPDGYLKAVRDL-CSKYNIL  164 (374)
Q Consensus        97 ~~~~~~~~~~~-~~~~~~--d~~~le~~l~~~~~~-------~~-~vi~~~~~~~~g~~~~~~~~l~~l~~l-~~~~~i~  164 (374)
                      ......- .++ -.++..  +.+.++++|+++++.       .+ +++++|.+  .|.+.+    +++|.++ |+.++ +
T Consensus       242 l~P~~n~-~Gi~g~I~~~~~~~~~i~~~i~~~~p~~~~~~~p~k~vvit~pTY--dG~~yd----i~~I~~~~~h~~~-~  313 (720)
T PRK13578        242 LETARNP-FGFIGGIDAHCFDEEYLREQIREVAPERADEARPFRLAVIQLGTY--DGTIYN----ARQVVDKIGHLCD-Y  313 (720)
T ss_pred             eeccccc-cCCcCCCChHHccHHHHHHHHHhcCccccccccCceEEEEECCCC--cceeec----HHHHHHHhhccCC-c
Confidence            4322110 111 111111  356799999887322       34 44444433  477877    9999998 68888 9


Q ss_pred             EEEeccccCCcccccC---cccccCCCCCc----EEEec--ccccCCccchhhheeCHHHH---------hhcCCCC-CC
Q 017259          165 MIADEIQSGLARSGRM---LASDWEEVRPD----MVILG--KALGGGVIPVSAVLADKEVM---------LCIQPGE-HG  225 (374)
Q Consensus       165 li~Dea~~~~~~~g~~---~~~~~~~~~~d----~~s~s--K~~~~G~~~~G~~~~~~~~~---------~~~~~~~-~~  225 (374)
                      |++||||+++-.-...   +........+|    +++-|  |.+++ +...+++..+...+         +++.... ..
T Consensus       314 llvDEAhgah~~F~p~~~~~p~~al~~GaD~p~i~v~QStHKtL~a-lTQaS~LHvk~~~i~g~~~~v~~~r~~~al~m~  392 (720)
T PRK13578        314 ILFDSAWVGYEQFIPMMADCSPLLLELNENDPGIFVTQSVHKQQAG-FSQTSQIHKKDNHIKGQARYCPHKRLNNAFMLH  392 (720)
T ss_pred             EEEeCcchhhhccCcccccCChhhhhcCCCCCCeEEEEChhhcchh-hhhHhhhhcCCcccccccccCCHHHHHHHHHHH
Confidence            9999999864211121   11112234556    67777  66553 31333454433221         1222111 23


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCc----e----------------------
Q 017259          226 STFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNY----V----------------------  276 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~----------------------  276 (374)
                      .|-+++-+.+++.-.+.+.+..   ..+.+...+....+++.+.+....+...    +                      
T Consensus       393 qSTSPsY~LmASLDva~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~~~p~~v~~~~~~~~~~~~~~~~~~~w~~  472 (720)
T PRK13578        393 ASTSPFYPLFAALDVNAKMHEGESGRRLWMECVKLGIEARKLILARCKLIRPFIPPVVDGKPWQDYPTEQIASDLRFFSF  472 (720)
T ss_pred             cCCChHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHHhCCCeeecccccccccccccCchhhhccccccccc
Confidence            3445555555555554554443   2455666666666777662221111000    0                      


Q ss_pred             --e-eEEE-----------EeeeEEEEeccCC--------CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHH
Q 017259          277 --K-EVRG-----------RGLFNAVEFDKTA--------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL  334 (374)
Q Consensus       277 --~-~~~~-----------~g~~~~~~~~~~~--------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i  334 (374)
                        . ..++           ...-+.+..+...        .|..+..+.++|.++||++.-.+...+-+-++...+++++
T Consensus       473 ~p~~~whgf~~~~~~~~~lDP~KltI~t~G~~~~~G~~~~~Gipg~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~  552 (720)
T PRK13578        473 EPGEKWHGFEGYAEDQYFVDPCKLLLTTPGIDAETGEYEDFGIPATILANYLRENGIVPEKCDLNSILFLLTPAEDMAKL  552 (720)
T ss_pred             ccCccccccccccccccccCCceEEEEcCCcCcccccccccCccHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHH
Confidence              0 0000           1111122222110        0222688999998899999998888888888888999999


Q ss_pred             HHHHHHHHHHHh
Q 017259          335 QEGSKALHDVLE  346 (374)
Q Consensus       335 ~~~~~~l~~~~~  346 (374)
                      +.++++|.++-+
T Consensus       553 ~~Lv~aL~~f~~  564 (720)
T PRK13578        553 QQLVAMLARFEK  564 (720)
T ss_pred             HHHHHHHHHHHH
Confidence            999999987754

>TIGR03799 NOD_PanD_pyr putative pyridoxal-dependent aspartate 1-decarboxylase

Probab=99.52  E-value=4e-12  Score=122.60  Aligned_cols=283  Identities=16%  Similarity=0.104  Sum_probs=155.7

Q ss_pred             EEecCChHHHHHHHHHHHHHcccccc---------cC-------CCCccEEEEeccCCCCcccccccccCCccccccCCC
Q 017259           39 VLPMNTGAEGVETALKLARKWGYVKK---------KF-------SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP  102 (374)
Q Consensus        39 ~~~~~~gs~a~~~al~~~~~~~~~~~---------G~-------~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  102 (374)
                      -++++|||+|+..|+.++|.......         |.       ...+..|++.+.. |.....+....+.+.       
T Consensus       162 G~~tsGGS~ANl~Al~~AR~~~~~~~~~~~~~~~~gl~~~~~~~~~~~~~v~~S~~~-H~S~~kaa~~lglg~-------  233 (522)
T TIGR03799       162 GAFCSGGTVANITALWVARNRLLKADGDFKGVAREGLFAALKHYGYDGLAILVSERG-HYSLGKAADVLGIGR-------  233 (522)
T ss_pred             eEEcCchHHHHHHHHHHHHHHhccccccccccccccchhhhhhccCCceEEEECCCc-hHHHHHHHHHcCCCc-------
Confidence            57899999999999999987532111         10       0112455555555 444443333322110       


Q ss_pred             CCCCceeccCC-----CHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259          103 LLPGHLKVDFG-----DITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus       103 ~~~~~~~~~~~-----d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                        ..+..++.+     |+++|+++|++   .+.++-+++.......+|.+.|    +++|.++|++||+++++|.+|++.
T Consensus       234 --~~v~~vp~d~~g~~d~~~L~~~i~~~~~~g~~~~~vvataGtt~tGaiDp----l~eIa~i~~~~g~~lHVDaA~gg~  307 (522)
T TIGR03799       234 --DNLIAIKTDANNRIDVDALRDKCAELAEQNIKPLAIVGVAGTTETGNIDP----LDEMADIAQELGCHFHVDAAWGGA  307 (522)
T ss_pred             --ccEEEEEeCCCCcCCHHHHHHHHHHHHHCCCCcEEEEEEecCcCCCCcCC----HHHHHHHHHHcCCeEEEEchhhhH
Confidence              122333332     79999999873   2223333333344556899999    999999999999999999999854


Q ss_pred             cccccCcccccCCC-CCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCC-----C-C-----CCCCCCHHH-HHHH
Q 017259          175 ARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGE-----H-G-----STFGGNPLA-SAVA  238 (374)
Q Consensus       175 ~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~-----~-~-----~~~~~~~~~-~~aa  238 (374)
                      ......+.....++ ..|.++++  |.+.+.. ++|.++.+ +.+.+.+....     . .     .++.++... ....
T Consensus       308 ~~~~~~~r~~l~gle~aDSit~d~HK~l~~P~-g~G~llvr~~~~~~~~~~~~~Yl~~~~~~d~~~~~legsR~~~al~l  386 (522)
T TIGR03799       308 TLLSNTYRHLLKGIERADSVTIDAHKQLYVPM-GAGMVLFKDPALMSAIEHHAEYILRKGSKDLGSHTLEGSRPGMAMLV  386 (522)
T ss_pred             HHhCHHHHHHhcCchhCCEEEEChhhcCCcCc-ccEEEEEeCHHHHHHhccCcchhcCCCCCccccceeecCcchHHHHH
Confidence            21111111112343 57888888  8888777 78887765 45545444310     0 0     112121111 2346


Q ss_pred             HHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---------------c----
Q 017259          239 IASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------------P----  296 (374)
Q Consensus       239 ~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------------~----  296 (374)
                      +.+++.+...   .+.++..++.+++.+.|++.    |++....++.-.++.|.+.....               .    
T Consensus       387 w~aL~~lG~~G~~~ii~~~~~la~~l~~~L~~~----~~~el~~~p~l~iv~Fr~~p~~~~~~l~~~~~~~~~~~~~~~~  462 (522)
T TIGR03799       387 YAGLHIIGRKGYELLIDQSIEKAKYFADLIQQQ----PDFELVTEPELCLLTYRYVPEEVQQALAKADEEQREKINELLD  462 (522)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEecCCCccEEEEEEeChhhcccccccchhhhhhHHHHHH
Confidence            6777777654   44555555666666655543    23322223333455555422110               0    


Q ss_pred             hhHHHHHHHHHHCCeE-eccC----------CCCEEEEec-CCCCCHHHHHHHHHH
Q 017259          297 VSAYDICLKMKERGIL-AKPT----------HDTIVRLTP-PLSISSNELQEGSKA  340 (374)
Q Consensus       297 ~~~~~~~~~l~~~Gi~-v~~~----------~~~~lRi~~-~~~~~~e~i~~~~~~  340 (374)
                      .....+.+.+.+.|.. ++..          ....||+++ +...+.++++.+++.
T Consensus       463 ~ln~~i~~~~~~~G~~~vs~t~l~~~~~~g~~~~~lR~~~~np~tt~~~i~~~l~~  518 (522)
T TIGR03799       463 RLTKFIQKRQREAGKSFVSRTRLTPAQYDHQPTVVFRVVLANPLTTHEILQDILDE  518 (522)
T ss_pred             HHHHHHHHHHHhcCCEEEEEEEecccccCCCCcEEEEEEecCCCCCHHHHHHHHHH
Confidence            0113455566666743 3321          124699976 344577888877653

This enzyme is proposed here to be a form of aspartate 1-decarboxylase, pyridoxal-dependent, that represents a non-orthologous displacement to the more widely distributed pyruvoyl-dependent form (TIGR00223). Aspartate 1-decarboxylase makes beta-alanine, used usually in pathothenate biosynthesis, by decarboxylation from asparatate. A number of species with the PanB and PanC enzymes, however, lack PanD. This protein family occurs in a number of Proteobacteria that lack PanD. This enzyme family appears to be a pyridoxal-dependent enzyme (see pfam00282). The family was identified by Partial Phylogenetic Profiling; members in Geobacter sulfurreducens, G. metallireducens, and Pseudoalteromonas atlantica are clustered with the genes for PanB and PanC. We suggest the gene symbol panP (panthothenate biosynthesis enzyme, Pyridoxal-dependent).

>COG0112 GlyA Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=99.51  E-value=1.1e-11  Score=110.81  Aligned_cols=295  Identities=16%  Similarity=0.153  Sum_probs=183.6

Q ss_pred             CcHHHHHHHHhc-ccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc--ccccCCccc
Q 017259           21 DKFPVFAERLTS-MFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA--ISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~-~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~--~~~~~~~~~   96 (374)
                      +..++++-..++ ++|.+.+ +-..||+.|+.+++.++     .++|     |+|+..+-+.-|+..-.  ..+++.- +
T Consensus        71 D~vE~laierak~LFga~~anVQPhSGs~AN~av~~Al-----l~pG-----Dtimgm~l~~GGHltHg~~v~~sG~~-~  139 (413)
T COG0112          71 DEVEELAIERAKKLFGAEYANVQPHSGSQANQAVYLAL-----LQPG-----DTIMGLDLSHGGHLTHGSPVNFSGKL-F  139 (413)
T ss_pred             HHHHHHHHHHHHHHhCCCccccCCCCchHHHHHHHHHH-----cCCC-----CeEecccCCCCCcccCCCCCCcccee-E
Confidence            334455544444 5688865 77899999999999999     6778     99999888865553322  2233221 1


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA  175 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~  175 (374)
                      .....++..+...   -|.|++++...++  +++.++.-.  +......+    +++++++|++.|.+|.+|-+|- |+.
T Consensus       140 ~~v~Y~vd~et~~---IDyD~~~k~a~e~--kPK~ii~G~--SaY~r~id----~~~~reIad~VGA~L~~DmAHiaGLV  208 (413)
T COG0112         140 NVVSYGVDPETGL---IDYDEVEKLAKEV--KPKLIIAGG--SAYSRPID----FKRFREIADEVGAYLMVDMAHVAGLI  208 (413)
T ss_pred             EeEecccccccCc---cCHHHHHHHHHHh--CCCEEEECc--cccccccC----HHHHHHHHHHhCceEEehHHHHHHHH
Confidence            1111111111000   1788999888876  555665522  22334555    9999999999999999999997 553


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeCH-HHHhhcCCCCCCCCCCCC-HHHHHHHHHHHHHHhhh---
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADK-EVMLCIQPGEHGSTFGGN-PLASAVAIASLDVIRDE---  248 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~aa~~al~~~~~~---  248 (374)
                      -.|.. . .... ..|+++-+  |+|.|+  |.|.+++++ ++.+++.....-...+++ .-..++-..++....+.   
T Consensus       209 A~G~~-p-~P~~-~AdvVTtTTHKTlrGP--rGG~Il~~~eel~kkin~aVFPg~qggpl~HviAakaVa~~Eal~p~fk  283 (413)
T COG0112         209 AGGVH-P-NPLP-HADVVTTTTHKTLRGP--RGGIILTNDEELAKKINSAVFPGLQGGPLMHVIAAKAVAFKEALEPEFK  283 (413)
T ss_pred             hcccC-C-CCCC-ccceEeCCcccCCCCC--CceEEEeccHHHHHHhhhhcCCccCCChHHHHHHHHHHHHHHHcChhHH
Confidence            22321 1 1111 36788665  888865  567788874 888888764332233332 23333333344444333   


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc----------CCC
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----------THD  318 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----------~~~  318 (374)
                      ++.+++.++.+.+.+.|.+.+.+   ++. -....+++.+++.+.  +.+..+....|-+.||.+.-          ...
T Consensus       284 ~Ya~qVv~NAkaLAe~l~~~G~~---vvs-GgTdnHl~lVDl~~~--~~~Gk~ae~~L~~~~It~NKN~iP~D~~~p~~t  357 (413)
T COG0112         284 EYAKQVVKNAKALAEALKERGFK---VVS-GGTDNHLVLVDLRSK--GLTGKKAEAALERAGITVNKNAIPFDPESPFVT  357 (413)
T ss_pred             HHHHHHHHHHHHHHHHHHHcCCe---Eec-CCccceEEEEEcccC--CCCHHHHHHHHHHcCEeeccCCCCCCCCCCCCC
Confidence            56777788888888888775432   222 122356777777632  22566777777788999843          235


Q ss_pred             CEEEEecC----CCCCHHHHHHHHHHHHHHHhccC
Q 017259          319 TIVRLTPP----LSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       319 ~~lRi~~~----~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..|||..+    ....++|++++.+.|.++++ ..
T Consensus       358 SGIRiGtpa~TtrG~~e~e~~~Ia~~I~~vl~-~~  391 (413)
T COG0112         358 SGIRIGTPAVTTRGFGEAEMEEIADLIADVLD-GL  391 (413)
T ss_pred             ccceeccHHHhhcCCCHHHHHHHHHHHHHHHh-cc
Confidence            78999654    34567899999999999887 54

>COG3844 Kynureninase [Amino acid transport and metabolism]

Probab=99.50  E-value=1.7e-11  Score=106.48  Aligned_cols=293  Identities=18%  Similarity=0.177  Sum_probs=186.8

Q ss_pred             cHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC-CCCcccccccccCCccccc
Q 017259           22 KFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC-FHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~-yhg~~~~~~~~~~~~~~~~   98 (374)
                      .-+.+..+|+-+.|.  .++..+.|.+--+...+-+...   ..+|     ++||+++.. |....+.+..+..   ...
T Consensus        77 lp~~lgdklApLiGA~~~Evvv~dtts~nl~k~L~aalr---~~~~-----r~vIv~E~~~fpTdly~a~g~~~---~~~  145 (407)
T COG3844          77 LPERLGDKLAPLIGARAGEVVVTDTTSINLFKVLAAALR---PQEG-----RRVIVSEGDNFPTDLYIAEGLAD---LLG  145 (407)
T ss_pred             chhHHHHHhhhhhcCCCCceEEeCCcchHHHHHHHHHhc---cCCC-----ceEEeecCCCCCcchhhhcchhh---hhc
Confidence            344566677776654  4788888877555545544432   3335     666666654 4333333332221   100


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                      .    ..++..+  ..+.+++++++   +.+++++++.++.-||...+    +.+|..++|+||+++++|=+|+.    |
T Consensus       146 ~----~~~~~~~--~~P~~~~~~~~---dd~AvV~L~~V~y~TGql~d----m~aiT~~AH~~galv~wDLAHsa----G  208 (407)
T COG3844         146 I----GYDLEGV--IAPRALEEAIT---DDVAVVLLSHVNYKTGQLLD----MRAITALAHQHGALVGWDLAHSA----G  208 (407)
T ss_pred             c----cccceee--eChHHHHHhhc---cceEEEEeccccccccceee----HHHHHHHHHhcCceEEeehhccc----C
Confidence            0    0011111  15778888888   68999999999999999998    99999999999999999999982    1


Q ss_pred             cCcccccCCCCCcE--EEecccccCCccchhhheeCHHHHhhcCCC--------------------CCCC---CCCCCHH
Q 017259          179 RMLASDWEEVRPDM--VILGKALGGGVIPVSAVLADKEVMLCIQPG--------------------EHGS---TFGGNPL  233 (374)
Q Consensus       179 ~~~~~~~~~~~~d~--~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--------------------~~~~---~~~~~~~  233 (374)
                      . +..+.-....|+  .+.-|-+-||--..+++...++..+...+.                    ....   .-..+.+
T Consensus       209 a-vp~~Lh~~gaDfaigcsyKYLNgGPGapa~l~v~~~h~e~~~~~lsgW~gha~pf~m~~~y~p~~ga~rf~~gt~~V~  287 (407)
T COG3844         209 A-VPVDLHAAGADFAIGCSYKYLNGGPGAPAGLFVAPRHRERSWPPLSGWWGHARPFAMEEVYAPGPGARRFLCGTQPVL  287 (407)
T ss_pred             C-cceeecccCCCeeeeeeceeccCCCCCceeEEeccccccccccccccccCCCCcchhhhccCcCccccceeeCCcchh
Confidence            1 122222233343  344476665431334455444443332211                    1111   1134677


Q ss_pred             HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee----eEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          234 ASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       234 ~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      ++++...+|+...+-   +++++.-.+.+++.+.++..-..+ ++-.    .-..+|..+.+..+      ...++.++|
T Consensus       288 s~aal~~aLDifa~~~i~~lR~kSlaLTd~fieLvEa~~~~~-~l~l~tPr~~~~rGsqvS~~hp------~~~~V~qaL  360 (407)
T COG3844         288 SLAALEGALDIFADVDITELRKKSLALTDYFIELVEARCEYY-GLTLVTPRAHEERGSQVSLYHP------HGYQVMQAL  360 (407)
T ss_pred             hhHHHhhhhhhhhhcCHHHHHHhhhHHHHHHHHHHHhccccC-CcEEeccchhhhccceeeEecC------cHHHHHHHH
Confidence            788888888876553   556666677788877776654322 1211    22345777777666      578999999


Q ss_pred             HHCCeEeccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          307 KERGILAKPTHDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       307 ~~~Gi~v~~~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .++||+.--..++.+|+.| |+..+-+|+=.+++.|.++++ ....
T Consensus       361 i~rGVigD~R~P~vlRfgftPlY~~~~DVw~AV~~L~evL~-t~a~  405 (407)
T COG3844         361 IDRGVIGDFREPDVLRFGFTPLYVSFVDVWDAVDALEEVLD-TLAW  405 (407)
T ss_pred             HHcCccccccCCCeeeecCccceechhHHHHHHHHHHHHHH-hhcc
Confidence            9999998888899999987 578899999999999999998 6654

>PRK15400 lysine decarboxylase CadA; Provisional

Probab=99.49  E-value=9.1e-12  Score=122.29  Aligned_cols=303  Identities=11%  Similarity=0.057  Sum_probs=179.2

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Ccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~   97 (374)
                      .....+.++..++.+|+++.+|..|| |.++.+++.++     +.+|     |.|++.+.+ |-+...++.+++ .|.|.
T Consensus       194 ~G~i~eAe~~AA~~fgAd~tyfvvNGTS~~n~av~~a~-----~~~G-----d~VLvdRN~-HKSv~haLilsga~PVYl  262 (714)
T PRK15400        194 SGPHKEAEEYIARVFNADRSYMVTNGTSTANKIVGMYS-----APAG-----STVLIDRNC-HKSLTHLMMMSDVTPIYF  262 (714)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCchHHHHHHHHHHh-----cCCC-----CEEEeeccc-HHHHHHHHHHcCCeEEEe
Confidence            34456777788888999987666655 55555555555     6778     999999999 555555555544 45554


Q ss_pred             ccCCCCCCCc-eeccCC--CHHHHHHHHHhcCCcE---EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           98 RGFGPLLPGH-LKVDFG--DITALEKIFKESGDQI---AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        98 ~~~~~~~~~~-~~~~~~--d~~~le~~l~~~~~~~---~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...... .++ -.++..  +.+.++++|+++++..   ++++++|.+  .|.+.+    +++|.++|+.++  |++||||
T Consensus       263 ~P~rn~-~Gi~g~I~~~~~~~e~i~~~i~~~p~ak~p~~~vit~pTY--dG~~yd----~~~I~~~~~~~~--ilvDEAw  333 (714)
T PRK15400        263 RPTRNA-YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNSTY--DGLLYN----TDFIKKTLDVKS--IHFDSAW  333 (714)
T ss_pred             cccccc-cCCccCCCccccCHHHHHHHHHhCccccCccEEEEECCCC--ccEecC----HHHHHHHhCCCC--EEEEccc
Confidence            322110 000 011111  4799999999876422   466666643  487887    999999999887  6899999


Q ss_pred             cCCcccccCcc-ccc--CCCC-Cc--EEEec--ccccCCccchhhheeC-----HHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          172 SGLARSGRMLA-SDW--EEVR-PD--MVILG--KALGGGVIPVSAVLAD-----KEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       172 ~~~~~~g~~~~-~~~--~~~~-~d--~~s~s--K~~~~G~~~~G~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      .++..-...+. ...  .+-. .+  +++-|  |.+++ +...+++..+     +.+.+.+.   ...|-+++-+.+++.
T Consensus       334 gah~~F~p~~~~~sam~~ga~~~~~i~vtQStHKtL~a-lTQaS~LHvkg~vd~~~~n~a~~---m~~STSPsY~l~ASL  409 (714)
T PRK15400        334 VPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAA-FSQASMIHVKGDVNEETFNEAYM---MHTTTSPHYGIVAST  409 (714)
T ss_pred             hhhhccCcccCCcChhhcCCCCCCceEEEEchhhcccc-hhHHhHHHHcCCCCHHHHHHHHH---HHcCCCcHHHHHHHH
Confidence            86422122111 111  1111 13  56666  76653 2122233222     22222232   334556666666666


Q ss_pred             HHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCC-CceeeE-------------------EE-----------Eee
Q 017259          239 IASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFP-NYVKEV-------------------RG-----------RGL  284 (374)
Q Consensus       239 ~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-------------------~~-----------~g~  284 (374)
                      -.+.+.+..   ..+.++..+....+++.+.++..... ++....                   ++           .+.
T Consensus       410 D~a~~~m~~~~G~~l~~~~i~~a~~~R~~l~~~~~~~~~w~~~~~~~~~~~~~~~w~~~p~~~whgf~~~~~~~~~lDP~  489 (714)
T PRK15400        410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI  489 (714)
T ss_pred             HHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhCCCcccCceEEecChhhcccchhcccCccccccCcccccccccccCCc
Confidence            666666643   24566677777777777766432000 000000                   00           111


Q ss_pred             eEEEEeccCC-------CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          285 FNAVEFDKTA-------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       285 ~~~~~~~~~~-------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      -+.+..+...       .|..+..+.++|.++||++.-.+...+-+.++...++++++.++++|.++-+
T Consensus       490 Klti~tpgi~~~g~~~~~Gipg~~v~~~L~e~gI~~E~~d~~~iLfl~s~g~t~~~~~~L~~aL~~f~~  558 (714)
T PRK15400        490 KVTLLTPGMKKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR  558 (714)
T ss_pred             eEEEEeCCCCCCccccccCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            1222222200       1345778999999999999999888888888899999999999999987643

>PRK15399 lysine decarboxylase LdcC; Provisional

Probab=99.48  E-value=1.9e-11  Score=120.08  Aligned_cols=302  Identities=12%  Similarity=0.081  Sum_probs=178.0

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Ccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~   97 (374)
                      .....+.++..++.+|+++.+|..|| |.++.+++.++     +.+|     |+|++.+.+ |-+...++.+++ .|.|.
T Consensus       194 ~G~i~eAe~~aA~~fgAd~tyfvvNGTS~~n~av~~a~-----~~~G-----d~VLvdRN~-HKSv~~aLilsga~PVYl  262 (713)
T PRK15399        194 TGPHLEAEEYIARTFGAEQSYIVTNGTSTSNKIVGMYA-----APAG-----STLLIDRNC-HKSLAHLLMMSDVVPIWL  262 (713)
T ss_pred             ChHHHHHHHHHHHHhCCCcEEEEeCChHHHHHHHHHHh-----cCCC-----CEEEeeccc-HHHHHHHHHHcCCeeEEe
Confidence            44466777788888999987665555 55555566655     6788     999999999 555444555544 45554


Q ss_pred             ccCCCCCCCce-eccCC--CHHHHHHHHHhcCCc---EEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE-EEecc
Q 017259           98 RGFGPLLPGHL-KVDFG--DITALEKIFKESGDQ---IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM-IADEI  170 (374)
Q Consensus        98 ~~~~~~~~~~~-~~~~~--d~~~le~~l~~~~~~---~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l-i~Dea  170 (374)
                      .....- .++. .++..  +.+.++++|+++++.   .++++++|.+  .|.+.+    +++|.++|   |+.+ ++|||
T Consensus       263 ~P~~n~-~Gi~g~I~~~~~~~e~I~~~i~~~p~~~~p~~vvit~pTY--dGi~yd----~~~I~~~~---g~~~ilvDEA  332 (713)
T PRK15399        263 KPTRNA-LGILGGIPRREFTRDSIEEKVAATTQAQWPVHAVITNSTY--DGLLYN----TDWIKQTL---DVPSIHFDSA  332 (713)
T ss_pred             cccccc-cCCcCCCChhhccHHHHHHHHHhCCCcCCceEEEEECCCC--CceeeC----HHHHHHHh---CCCEEEEecc
Confidence            322110 0110 01111  458999999987643   3555555533  487777    89999998   6766 69999


Q ss_pred             ccCCcccccCcc-ccc--CCCCCcEE---Eec--ccccCCccchhhheeCH-----HHHhhcCCCCCCCCCCCCHHHHHH
Q 017259          171 QSGLARSGRMLA-SDW--EEVRPDMV---ILG--KALGGGVIPVSAVLADK-----EVMLCIQPGEHGSTFGGNPLASAV  237 (374)
Q Consensus       171 ~~~~~~~g~~~~-~~~--~~~~~d~~---s~s--K~~~~G~~~~G~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~a  237 (374)
                      |.++..-...+. ...  .+-.+|.+   +-|  |.+++ +...+++..+.     .+.+.+.   ...|-+++-+.+++
T Consensus       333 hgah~~F~p~~~~~sam~~~~~aD~~i~~tQStHKtL~a-lTQaS~iHvk~~vd~~~~n~a~~---m~~STSPsY~LmAS  408 (713)
T PRK15399        333 WVPYTHFHPIYQGKSGMSGERVPGKVIFETQSTHKMLAA-FSQASLIHIKGEYDEETFNEAFM---MHTSTSPSYPIVAS  408 (713)
T ss_pred             chhhhhcCcccCCcChhhCCCCCCeeeeeeeehhccccc-cchheeeeecCCCCHHHHHHHHH---HHcCCCcHHHHHHH
Confidence            986422112111 111  11134655   555  76553 21222333322     2222232   33455666666666


Q ss_pred             HHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCC-CceeeE-------------------EE-----------Ee
Q 017259          238 AIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFP-NYVKEV-------------------RG-----------RG  283 (374)
Q Consensus       238 a~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~-------------------~~-----------~g  283 (374)
                      .-.+.+++..   ..+.++..+....+++.+.++..... ++....                   ++           .+
T Consensus       409 LD~a~~~m~~~~G~~l~~~~i~~a~~fR~~l~~~~~~~~~w~f~~~~~~~~~~~~~w~l~p~~~whgf~~~~~~~~~lDP  488 (713)
T PRK15399        409 VETAAAMLRGNPGKRLINRSVERALHFRKEVQRLREESDGWFFDIWQPENVDEAECWPVAPGEQWHGFKDADADHMFLDP  488 (713)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhccccccCceeeecCccccCCccceecCCCcccccccccccccccCCC
Confidence            6666666653   25566677777777777766532100 000000                   00           11


Q ss_pred             eeEEEEeccC-------CCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          284 LFNAVEFDKT-------ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       284 ~~~~~~~~~~-------~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .-+.+..+..       ..|.++..+.++|.++||++.-.+...+-+.++...++++++.++++|.++-+
T Consensus       489 ~KltI~t~g~~~~g~~~~~Gi~g~~l~~~L~e~gI~~E~~d~~~vL~l~s~g~t~~~~~~L~~aL~~f~~  558 (713)
T PRK15399        489 VKVTILTPGMDEQGNMSEEGIPAALVAKFLDERGIVVEKTGPYNLLFLFSIGIDKTKAMGLLRGLTEFKR  558 (713)
T ss_pred             ceEEEEecCcccccccccCCCCHHHHHHHHHHcCCEEEecCCCeEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            1222222211       11456888999999999999999888888888889999999999999987643

>COG1448 TyrB Aspartate/tyrosine/aromatic aminotransferase [Amino acid transport and metabolism]

Probab=99.47  E-value=5.1e-12  Score=112.52  Aligned_cols=299  Identities=17%  Similarity=0.197  Sum_probs=172.8

Q ss_pred             CCCCCcHHHHHHHHhccc-CCC---------eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc
Q 017259           17 AFYNDKFPVFAERLTSMF-GYD---------MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA   86 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~-~~~---------~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~   86 (374)
                      +.+-....++.+.+.++. |.+         ..+.|.|||-|+..+-..+....   +     +..|++++|++.-+...
T Consensus        65 Yl~i~G~~~f~~~~~~llFG~d~~~l~~~Rv~t~Qt~GGTGAL~~~A~fl~~~~---~-----~~~vwis~PtW~NH~~I  136 (396)
T COG1448          65 YLPIEGLPEFLEAVQKLLFGADSPALAEDRVATVQTLGGTGALRVAADFLARFF---P-----DATVWISDPTWPNHKAI  136 (396)
T ss_pred             cCCcCCcHHHHHHHHHHhcCCCcHHHHhhhHhheecCCcchHHHHHHHHHHHhC---C-----CceEEeCCCCcHhHHHH
Confidence            344555667777777754 543         34789999999999998886432   2     26799999998555444


Q ss_pred             cccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259           87 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI  166 (374)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li  166 (374)
                      ....+-.-..+.-|..   ....   -|.+.+-+.|+..+++.-+++-.+-+|||| +.+|.+.+++|.++.++.+++-+
T Consensus       137 f~~aGl~v~~Y~Yyd~---~~~~---~df~~mla~L~~a~~~~vvLLH~CcHNPTG-~D~t~~qW~~l~~~~~~r~lip~  209 (396)
T COG1448         137 FEAAGLEVETYPYYDA---ETKG---LDFDGMLADLKTAPEGSVVLLHGCCHNPTG-IDPTEEQWQELADLIKERGLIPF  209 (396)
T ss_pred             HHhcCCceeeeecccc---cccc---ccHHHHHHHHHhCCCCCEEEEecCCCCCCC-CCCCHHHHHHHHHHHHHcCCeee
Confidence            3333322111111111   1111   156666666776655554555555677777 55599999999999999999999


Q ss_pred             EeccccCCcccccC--ccccc-CCCCCcE-E--EecccccC-Cccchhhhe--e-CHHHHhhcCCC---CCCCCCC-CCH
Q 017259          167 ADEIQSGLARSGRM--LASDW-EEVRPDM-V--ILGKALGG-GVIPVSAVL--A-DKEVMLCIQPG---EHGSTFG-GNP  232 (374)
Q Consensus       167 ~Dea~~~~~~~g~~--~~~~~-~~~~~d~-~--s~sK~~~~-G~~~~G~~~--~-~~~~~~~~~~~---~~~~~~~-~~~  232 (374)
                      +|=+|-||+.....  ..... ....+.+ +  ||||.|+- |. |+|++.  + +++....+..-   ..-.+|+ ++.
T Consensus       210 ~D~AYQGF~~GleeDa~~lR~~a~~~~~~lva~S~SKnfgLYgE-RVGa~~vva~~~~~a~~v~sqlk~~iR~~ySnPP~  288 (396)
T COG1448         210 FDIAYQGFADGLEEDAYALRLFAEVGPELLVASSFSKNFGLYGE-RVGALSVVAEDAEEADRVLSQLKAIIRTNYSNPPA  288 (396)
T ss_pred             eehhhhhhccchHHHHHHHHHHHHhCCcEEEEehhhhhhhhhhh-ccceeEEEeCCHHHHHHHHHHHHHHHHhccCCCch
Confidence            99999988532211  11111 1223333 2  88999995 88 888743  2 33333333210   1122333 233


Q ss_pred             HHHHHHHHHHHH------Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          233 LASAVAIASLDV------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       233 ~~~~aa~~al~~------~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      .++......|..      ++.  +++++++.+.+..+.+.|++....- .+..-....|.|...   .    .+.+++-.
T Consensus       289 ~Ga~vva~IL~~p~Lra~W~~El~~Mr~Ri~~mR~~lv~~L~~~~~~~-~f~~i~~Q~GMFsy~---G----ls~~QV~r  360 (396)
T COG1448         289 HGAAVVATILNNPELRAEWEQELEEMRQRILEMRQALVDALKALGAPR-NFDFIISQRGMFSYT---G----LSPEQVDR  360 (396)
T ss_pred             hhHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCc-ccchHhhcCceeecC---C----CCHHHHHH
Confidence            333322222211      111  2567777777777777777643220 011112223333221   1    15556555


Q ss_pred             HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .--+.||++...+    ||++. ..++..++.+.++|.++
T Consensus       361 Lree~~IY~v~sG----Ri~va-Gl~~~ni~~va~ai~~v  395 (396)
T COG1448         361 LREEFGIYLVASG----RINVA-GLNTSNIDYVAKAIAAV  395 (396)
T ss_pred             HHHhccEEEecCC----eeeec-cCChhhHHHHHHHHHhh
Confidence            5556799998775    88755 56788999999988765

>PLN02271 serine hydroxymethyltransferase

Probab=99.46  E-value=9.2e-11  Score=111.36  Aligned_cols=275  Identities=11%  Similarity=-0.011  Sum_probs=165.0

Q ss_pred             EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cCCccccccCCCCCCCceeccC------
Q 017259           40 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAIRGFGPLLPGHLKVDF------  112 (374)
Q Consensus        40 ~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~------  112 (374)
                      +-.-||+.|+.+++..+     .++|     |+|+..+..+-|+....... .+   ....+...........+      
T Consensus       218 VQp~SGs~AN~aV~~AL-----l~PG-----D~IL~ldl~~GGHlshg~~~~~g---~~vs~sG~~~~~vpY~~d~~~g~  284 (586)
T PLN02271        218 VQPYSCTSANFAVYTGL-----LLPG-----DRIMGLDSPSGGHMSHGYYTPGG---KKVSGASIFFESLPYKVNPQTGY  284 (586)
T ss_pred             eeeccHHHHHHHHHHHh-----cCCC-----CEEEEecCCCCCchhcccccccc---cccccccceEEEEEcccccccCc
Confidence            44569999999999888     6778     99999988865553332111 00   00000000001111111      


Q ss_pred             CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCcccccCCCCCc
Q 017259          113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPD  191 (374)
Q Consensus       113 ~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d  191 (374)
                      -|.+++++.+.+  .+++++++....++  ...+    ++++.++|+++|+++++|.+|. |+...+.. . ... ...|
T Consensus       285 IDyd~lek~a~~--~rPKLII~g~Sayp--r~~D----~~~i~eIAdevGA~LmvD~AH~aGLIa~g~~-~-sP~-~~aD  353 (586)
T PLN02271        285 IDYDKLEEKALD--FRPKILICGGSSYP--REWD----YARFRQIADKCGAVLMCDMAHISGLVAAKEC-V-NPF-DYCD  353 (586)
T ss_pred             cCHHHHHHHhhh--cCCeEEEECchhcc--CcCC----HHHHHHHHHHcCCEEEEECcccccccccCcC-C-CCC-cCCc
Confidence            178888885543  47888988665444  4566    9999999999999999999998 54222211 0 111 2468


Q ss_pred             EEEec--ccccCCccchhhheeCHHH--------------------HhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          192 MVILG--KALGGGVIPVSAVLADKEV--------------------MLCIQPGEH-GSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       192 ~~s~s--K~~~~G~~~~G~~~~~~~~--------------------~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +++++  |++.|.. + |.++.+++.                    .+++..... +..-++.....++...+++.+...
T Consensus       354 vvt~TTHKtLrGPr-G-G~I~~r~~~~~~~~g~~gs~s~~~~~~d~~~kI~~aVfPglqgGphn~~IAalAvalkea~~~  431 (586)
T PLN02271        354 IVTSTTHKSLRGPR-G-GIIFYRKGPKLRKQGMLLSHGDDNSHYDFEEKINFAVFPSLQGGPHNNHIAALAIALKQVATP  431 (586)
T ss_pred             EEEeCCcccCCCCC-c-eEEEecccccccccCCccccccccccHHHHHHhhcccCCccccChhHHHHHHHHHHHHHHhCh
Confidence            88666  9998765 3 666666542                    222221111 111122222345555556655443


Q ss_pred             ---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---------
Q 017259          249 ---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------  316 (374)
Q Consensus       249 ---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---------  316 (374)
                         ++.+++.++.+.+.+.|.+.+..   ++.. ....+++++++...  +.+.....+.|-+.||.+...         
T Consensus       432 efk~Ya~QVv~NAkaLA~~L~~~G~~---vv~g-gTdnHlvLvDl~~~--g~~G~~ae~~Le~~~I~~Nkn~iP~d~~~~  505 (586)
T PLN02271        432 EYKAYMQQVKKNAQALASALLRRKCR---LVTG-GTDNHLLLWDLTTL--GLTGKNYEKVCEMCHITLNKTAIFGDNGTI  505 (586)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHCCCe---EeeC-CCCcceeeecCccc--CCCHHHHHHHHHHcCeEeccccCCCCCCCC
Confidence               56677777788887777665432   2321 12457778777442  224666667777789988431         


Q ss_pred             CCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          317 HDTIVRLTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+..|||..+    ....++|++++.+.|.++++
T Consensus       506 ~psGiRiGT~alT~rG~~e~d~~~iA~~i~~~~~  539 (586)
T PLN02271        506 SPGGVRIGTPAMTSRGCLESDFETIADFLLRAAQ  539 (586)
T ss_pred             CCCcccccCHHHHhcCCCcHHHHHHHHHHHHHHh
Confidence            3578999754    34577899999999888876

>PLN02452 phosphoserine transaminase

Probab=99.45  E-value=1e-11  Score=114.96  Aligned_cols=288  Identities=10%  Similarity=0.012  Sum_probs=180.8

Q ss_pred             CCcHHHHHHHHhcccCCC---e-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc-CCc
Q 017259           20 NDKFPVFAERLTSMFGYD---M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~   94 (374)
                      ...+.+.++.|.++++.+   + +++..|||.+++.++..+     +.+|     +++++...++.|....-.+.. +..
T Consensus        51 ~~i~~~~~~~L~~l~~~p~~y~v~~l~Gsgt~~~ea~~~nl-----~~~~-----~~~l~~~~G~fg~r~~~~a~~~g~~  120 (365)
T PLN02452         51 LSIIQKAEADLRELLDIPDNYEVLFLQGGASTQFAAIPLNL-----CKPG-----DKADFVVTGSWSKKAAKEAKKYCKT  120 (365)
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEeCccHHHHHHHHHhc-----CCCC-----CeEEEEECCHHHHHHHHHHHHhCCC
Confidence            456777888888887642   3 466688999999999888     4455     666666655545332221111 110


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      .... ..+   ........+++++    +. +++.+.+.+.+....+|.. .+    ++++.      ++++|+|.+.+-
T Consensus       121 ~~~~-~~~---~~~~~~~~~~~~~----~~-~~~~~~v~~~hnETstGv~~~~----~~~i~------~~~lvVDa~Ss~  181 (365)
T PLN02452        121 NVIA-SGK---DEKYTKIPSVSEW----EL-TPDAKFVHICANETIHGVEFKD----YPDVG------NVPLVADMSSNF  181 (365)
T ss_pred             cEEE-ecC---CCCCCCCCChHHc----CC-CCCCcEEEECCCCCCCcEecCc----ccccC------CCeEEEECCccc
Confidence            0000 000   0000011134443    22 2467788888877778874 44    55553      389999999872


Q ss_pred             CcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC-----------CCCCC-CCCCHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----------EHGST-FGGNPLASAVAIAS  241 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~aa~~a  241 (374)
                      .   +.++..+.+++  ++.+.-|++| .- ++|+++.++++.+++...           ..... ++++..+..+..++
T Consensus       182 g---~~pidv~~~~v--~~~saqK~lG-P~-Gl~~v~vr~~~l~~~~~~~~~~~~~~~~~~~~s~~~TP~v~~i~~l~~a  254 (365)
T PLN02452        182 L---SKPVDVSKYGV--IYAGAQKNVG-PS-GVTIVIIRKDLIGNARPITPGMLDYKIHAENDSLYNTPPCFGIYMCGLV  254 (365)
T ss_pred             c---CcccCHHHcCE--EEEecccccC-CC-CeEEEEEcHHHHhhcccCCCchhhHHHHHhcCCccCChhHHHHHHHHHH
Confidence            2   23334443433  5556669996 33 567888999888775432           01122 36688888899999


Q ss_pred             HHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259          242 LDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH  317 (374)
Q Consensus       242 l~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  317 (374)
                      ++++.++    .+.++.+++.+++++.|++....+...+.....+...+.|.+++..   ...+|.+.+.++|++..+++
T Consensus       255 L~~l~~~gGl~~~~~r~~~~a~~l~~~l~~~~G~y~~~~~~~~rs~~~vsF~~~~~~---~~~~f~~~~~~~g~~~~~G~  331 (365)
T PLN02452        255 FEDLLAQGGLKAMEKRNIRKADLLYDAIDESNGFYVCPVEKSVRSLMNVPFTLGGSE---LEAEFVKEAAKAGMVQLKGH  331 (365)
T ss_pred             HHHHHHccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChHHhCCeEEEEEcCCch---hHHHHHHHHHHCCCcccCCc
Confidence            9998764    5667777788888888876421111111111123445666666543   67899999999999998875


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        -+.+|++..-..+.++++.+++.+++.-+
T Consensus       332 r~~gg~R~s~yna~~~~~v~~L~~~m~~f~~  362 (365)
T PLN02452        332 RSVGGMRASIYNAMPLAGVEKLVAFMKDFQA  362 (365)
T ss_pred             cccCceEEECcCCCCHHHHHHHHHHHHHHHH
Confidence              23499998888999999999999988765

>TIGR01365 serC_2 phosphoserine aminotransferase, Methanosarcina type

Probab=99.43  E-value=8.2e-12  Score=115.61  Aligned_cols=298  Identities=14%  Similarity=0.122  Sum_probs=181.1

Q ss_pred             HHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC--C--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--D--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      |+.+.+-...|.++. ....+.+..+.|.++++.  +  -++++.|||.++++++..+.    .++|     +++++. +
T Consensus        22 ~~~~~~~~~~HRs~~-F~~i~~e~~~~L~~l~~~~~~~~v~~l~GsGT~a~Eaa~~nl~----~~~g-----~~vLv~-g   90 (374)
T TIGR01365        22 ELKNAPLGRSHRSKL-GKEKLAEAIKKTREMLGVPADYLIGIVPASDTGAVEMALWSML----GCRG-----VDVLAW-E   90 (374)
T ss_pred             HHhhhhcccCcCCHH-HHHHHHHHHHHHHHHhCCCCCcEEEEECCchHHHHHHHHHHcC----CCCC-----CeEEEE-C
Confidence            444444334444432 256677788888888764  2  25779999999999999883    1355     777764 3


Q ss_pred             CCCCcccc---cccccCCccccccCCCCCCCceeccCC---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           79 CFHGRTLA---AISMSCDNEAIRGFGPLLPGHLKVDFG---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        79 ~yhg~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      . .|....   +...+...          ......++.   ++++++.  +   ..   +++.+.-.++|...|    ++
T Consensus        91 ~-FG~r~~~eia~~~g~~~----------v~~l~~~~g~~~~~~~ve~--~---~~---v~~vhnETSTGv~np----v~  147 (374)
T TIGR01365        91 S-FGKGWVTDVTKQLKLPD----------VRVLEAEYGKLPDLKKVDF--K---ND---VVFTWNGTTSGVRVP----NG  147 (374)
T ss_pred             H-HHHHHHHHHHHhcCCCC----------cEEEcCCCCCCCCHHHcCC--C---CC---EEEecCCCchheecc----cc
Confidence            3 354322   11111100          111112222   5666652  1   12   456666677888887    65


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC--------
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG--------  222 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--------  222 (374)
                      ++.+.+  ++.++|+|.+-+ ++  +.++..+  +  .|++  +..|++++.- ++++++.+++..++....        
T Consensus       148 ~i~~~~--~~~lliVDavSs-~g--~~~l~~d--~--iDv~~tgsQK~L~~pp-Gls~v~vs~~Al~~~~~~~~y~~~~~  217 (374)
T TIGR01365       148 DFIPAD--REGLTICDATSA-AF--AQDLDYH--K--LDVVTFSWQKVLGGEG-AHGMLILSPRAVARLESYTPAWPLPK  217 (374)
T ss_pred             cccccc--CCCcEEEEccch-hc--CCCCChh--H--CcEEEEechhccCCCC-ceEEEEECHHHHHHHhhcCCCCCChh
Confidence            555322  589999999876 32  3333333  2  4655  4449999644 557788887766554310        


Q ss_pred             ---------------CCCCCCCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHH-HhCCCcee-eEEE
Q 017259          223 ---------------EHGSTFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQ-QQFPNYVK-EVRG  281 (374)
Q Consensus       223 ---------------~~~~~~~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~-~~~~  281 (374)
                                     .....+.++..+..++..+++++.++    +..++.+++.+.+++.+++++ ..+  ... ....
T Consensus       218 ~~~~~~~~~~~~~~~~~~t~~TP~v~~l~a~~~~l~~i~~egGle~~~~Rh~~~a~~l~~~l~~lg~l~~--~~~~~~~r  295 (374)
T TIGR01365       218 IFRLTKGGKLNKKIFEGSTINTPSMLCVEDWLDALKWAESIGGLKPLIARADDNLAVLEAFVAKNNWIHF--LAETPEIR  295 (374)
T ss_pred             hhccccccchhhhhhcCCCCCChHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCccc--CCCChhhc
Confidence                           01223455666677777778766553    567777888888888888875 221  111 1122


Q ss_pred             EeeeEEEEeccCCC---chh-----HHHHHHHHHHCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          282 RGLFNAVEFDKTAL---PVS-----AYDICLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       282 ~g~~~~~~~~~~~~---~~~-----~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +...+.+.++....   ..+     ..++.+.|.++||.+.++.    +..|||...-..+.+|++.+++.|+=+..
T Consensus       296 S~tvt~v~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gi~i~~G~~~~~~~~fRIg~~G~i~~~di~~l~~~l~~~~~  372 (374)
T TIGR01365       296 SNTSVCLKVVDPAIDALDEDAQADFAKELISTLEKEGVAYDIGSYRDAPSGLRIWCGATVEKSDLECLCPWLDWAFA  372 (374)
T ss_pred             CCCeEEEEeCCccccccccchhhHHHHHHHHHHHHCCEEEeccccccCCCceEEecCCcCCHHHHHHHHHHHHHHHh
Confidence            34444455533210   002     5789999999999998753    48899987778899999999999976654

This model represents a variant form of the serine biosynthesis enzyme phosphoserine aminotransferase, as found in a small number of distantly related species, including Caulobacter crescentus, Mesorhizobium loti, and the archaeon Methanosarcina barkeri.

>TIGR02617 tnaA_trp_ase tryptophanase, leader peptide-associated

Probab=99.43  E-value=1.1e-10  Score=107.76  Aligned_cols=326  Identities=18%  Similarity=0.153  Sum_probs=187.3

Q ss_pred             HHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe------
Q 017259            3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC------   76 (374)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~------   76 (374)
                      +|.+++..+..  .+..++-+.+|++..++++|.+.++++.+|..+...+++++..    ++|     +++++.      
T Consensus        58 ~m~aAM~~GDD--~Y~gdpSv~~Lee~vael~G~E~alpthqGRgaE~Il~~~~~~----~~g-----~e~g~~~~~~~v  126 (467)
T TIGR02617        58 SMQAAMMRGDE--AYSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIK----KRE-----QEKGLDRSKMVA  126 (467)
T ss_pred             HHHHHHHcCCc--ccccCchHHHHHHHHHHHhCCceEEECCCCchHHHHHHHhhcc----ccc-----cccccccccccc
Confidence            44555544322  1344777889999999999999999999999999999988842    245     555522      


Q ss_pred             ccCCCCccc-ccccccCCccccccCCC--CCCCceeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChh
Q 017259           77 CGCFHGRTL-AAISMSCDNEAIRGFGP--LLPGHLKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDG  149 (374)
Q Consensus        77 ~~~yhg~~~-~~~~~~~~~~~~~~~~~--~~~~~~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~  149 (374)
                      ...||..+. +...+++..... ...+  ..... ..++   -|+++++++|+.++ +++..+.+.-..|..|+.+.|.+
T Consensus       127 ~hn~~fett~g~a~l~G~~~~~-l~~~ea~~~~~-~~~fkG~~dl~~le~~I~~~g~~~i~~v~~tlt~N~~GGqpvsle  204 (467)
T TIGR02617       127 FSNYFFDTTQGHSQINGCTARN-VYTKEAFDTGV-RYDFKGNFDLEGLERGIEEVGPNNVPYIVATITCNSAGGQPVSLA  204 (467)
T ss_pred             ceEEEEecchHHHHHcCceeec-ccchhhccccc-CCCCCCCcCHHHHHHHHhhcCCCCceeeeeeEEEecCCCEEeCHH
Confidence            223333322 222233211100 0000  00000 0111   18999999998653 34555555545566666667999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccC----C------cccccCcc-c-ccCCCCCcEE--EecccccCCccchhh-heeC-H
Q 017259          150 YLKAVRDLCSKYNILMIADEIQSG----L------ARSGRMLA-S-DWEEVRPDMV--ILGKALGGGVIPVSA-VLAD-K  213 (374)
Q Consensus       150 ~l~~l~~l~~~~~i~li~Dea~~~----~------~~~g~~~~-~-~~~~~~~d~~--s~sK~~~~G~~~~G~-~~~~-~  213 (374)
                      .++++.++|++||++++.|.+.-.    |      ++.+.... + ....-..|.+  |+||.++   +|+|. ++++ +
T Consensus       205 nlr~V~~la~~~GIplhLDgARl~nNA~fIk~rE~~a~~~si~eI~rE~~~~aDsvt~slsKglg---ApvGg~Lag~d~  281 (467)
T TIGR02617       205 NLKAVYEIAKKYDIPVVMDSARFAENAYFIKQREAEYKNWSIEQITRETYKYADMLAMSAKKDAM---VPMGGLLCFKDD  281 (467)
T ss_pred             HHHHHHHHHHHcCCcEEEEhHHHHHHhhhhhhcchhhcCCCHHHHHHHhhccCCEEEEEcCCCCC---CcccceEEecch
Confidence            999999999999999999976531    1      11221100 0 0001234655  6668776   26665 4454 4


Q ss_pred             ---HHHhhcCCC----CCCCCCCC-CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeee
Q 017259          214 ---EVMLCIQPG----EHGSTFGG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLF  285 (374)
Q Consensus       214 ---~~~~~~~~~----~~~~~~~~-~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~  285 (374)
                         ++++.++..    ....||++ +.=-+.|....|+..-++++.+..-...+++.++|.+.+     ++... ..|+-
T Consensus       282 ~~~~l~~~~~~~~i~~EGf~tYGGlagrd~ea~a~Gl~e~~~~~yl~~ri~qv~yl~~~L~~~G-----vpi~~-~Ggha  355 (467)
T TIGR02617       282 SFFDVYTECRTLCVVQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRINQVQYLVNGLEEIG-----VVCQQ-AGGHA  355 (467)
T ss_pred             hHHHHHHHHHhhcccccCCcCcCchhHHHHHHHHhhhhhcccHHHHHHHHHHHHHHHHHHHhCC-----CcEEe-cCccE
Confidence               344554432    22345543 333334444456655556777777788888888887763     33322 34444


Q ss_pred             EEEEe----ccCCC-chhHHHHHHHHH-HCCeEe---ccC--------------CCCEEEEecC-CCCCHHHHHHHHHHH
Q 017259          286 NAVEF----DKTAL-PVSAYDICLKMK-ERGILA---KPT--------------HDTIVRLTPP-LSISSNELQEGSKAL  341 (374)
Q Consensus       286 ~~~~~----~~~~~-~~~~~~~~~~l~-~~Gi~v---~~~--------------~~~~lRi~~~-~~~~~e~i~~~~~~l  341 (374)
                      +.++.    |..+. .-.+..++..|- +.||-.   ...              ....+|+++| ..-|.+++|..++++
T Consensus       356 v~iDa~~~lphip~~~fpa~al~~~ly~~~GiR~~e~G~~~~~rd~~~~~~~~~~~el~RlaipRrvyt~~h~d~v~~~~  435 (467)
T TIGR02617       356 AFVDAGKLLPHIPADQFPAHALACELYKVAGIRAVEIGSLLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAF  435 (467)
T ss_pred             EEEehhhhCCCCChhhCcHHHHHHHHHHHcCcceEeecceecccCCCCCccCCCccceeeeccccccccHhHHHHHHHHH
Confidence            44432    21111 124566766664 445532   110              1368899776 456999999999999


Q ss_pred             HHHHhccCCc
Q 017259          342 HDVLELDLPK  351 (374)
Q Consensus       342 ~~~~~~~~~~  351 (374)
                      ..+.+ ....
T Consensus       436 ~~~~~-~~~~  444 (467)
T TIGR02617       436 KHVKE-NAPN  444 (467)
T ss_pred             HHHHh-hhhh
Confidence            99887 4433

Members of this family belong to the beta-eliminating lyase family (pfam01212) and act as tryptophanase (L-tryptophan indole-lyase). The tryptophanases of this family, as a rule, are found with a tryptophanase leader peptide (TnaC) encoded upstream. Both tryptophanases (4.1.99.1) and tyrosine phenol-lyases (EC 4.1.99.2) are found between trusted and noise cutoffs, but this model captures nearly all tryptophanases for which the leader peptide gene tnaC can be found upstream.

>KOG0258 consensus Alanine aminotransferase [Amino acid transport and metabolism]

Probab=99.42  E-value=2.1e-11  Score=108.25  Aligned_cols=298  Identities=13%  Similarity=0.087  Sum_probs=169.8

Q ss_pred             CCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..-.++.+++.+.+.-|    ++.|++|.|+|.|+...|.++.    ..+.     +-|+++-|-|.-+.....-+++.
T Consensus       114 Gv~~vR~~VA~~I~rRDG~p~~p~dI~LT~GAS~ai~~il~l~~----~~~~-----~GvliPiPQYPLYsAti~l~~~~  184 (475)
T KOG0258|consen  114 GVPGVRKHVAEFIERRDGIPADPEDIFLTTGASPAIRSILSLLI----AGKK-----TGVLIPIPQYPLYSATISLLGGT  184 (475)
T ss_pred             CChhHHHHHHHHHHhccCCCCCHHHeeecCCCcHHHHHHHHHHh----cCCC-----CceEeecCCCchhHHHHHHhCCc
Confidence            444456667777766544    4589999999999999999886    2233     88999999995443332222221


Q ss_pred             --ccccccCCCCCCCceeccCCCHHHHHHHHHhcC--CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           94 --NEAIRGFGPLLPGHLKVDFGDITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        94 --~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                        +.+....    ..|..    |.++|++.+++..  =+++++++-++.|+||.+. |++-+++|.++|.++++.|+.||
T Consensus       185 ~v~YyLdEe----~~W~l----d~~el~~~~~eA~k~i~~r~lvvINPGNPTGqvl-s~e~ie~i~~fa~~~~l~llaDE  255 (475)
T KOG0258|consen  185 QVPYYLDEE----SNWSL----DVAELERSVDEARKGINPRALVVINPGNPTGQVL-SEENIEGIICFAAEEGLVLLADE  255 (475)
T ss_pred             ccceeeccc----cCCCC----CHHHHHHHHHHHhccCCceEEEEECCCCccchhh-cHHHHHHHHHHHHHcCeEEechH
Confidence              1111000    11111    7888888877532  3466766667778888777 99999999999999999999999


Q ss_pred             cccCCccc-c-cCcccc----cC-CCCCc------EEEecccccC--Cccchhhhe---eCHHHHhhcCCCCCCCCCCCC
Q 017259          170 IQSGLARS-G-RMLASD----WE-EVRPD------MVILGKALGG--GVIPVSAVL---ADKEVMLCIQPGEHGSTFGGN  231 (374)
Q Consensus       170 a~~~~~~~-g-~~~~~~----~~-~~~~d------~~s~sK~~~~--G~~~~G~~~---~~~~~~~~~~~~~~~~~~~~~  231 (374)
                      +|-+-.+. + ++.++.    .. ...++      +-+.||++.|  |. |.|++=   ..++..+.+.... ....+.+
T Consensus       256 VYQ~Nvy~~~skFhSfKKvl~emg~~~~~~v~L~SfhSvSKGy~gECG~-RGGYmEv~n~~prv~~qi~Kl~-si~lc~~  333 (475)
T KOG0258|consen  256 VYQDNVYTTGSKFHSFKKVLHEMGNPYPDNVSLASFHSVSKGYMGECGQ-RGGYMESLNRDPRVKQQIKKLA-SIKLCPQ  333 (475)
T ss_pred             HHHhhccCCCcchHhHHHHHHHhcCccCCceEEEeeecccccceeeecc-cCCeeecccCChhHHHHHHHHH-hhhhcCC
Confidence            99863232 3 232221    11 12332      2266898776  88 888852   2233333322110 0000100


Q ss_pred             HHHHHH----------HHHHHHH--HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259          232 PLASAV----------AIASLDV--IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----  295 (374)
Q Consensus       232 ~~~~~a----------a~~al~~--~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  295 (374)
                      .-+++.          +-.+.+.  -+.+.+.+.++.+.+.+.+.++.+     ..+...+.+|.|+.|.-...+.    
T Consensus       334 V~GQ~~vdl~VnPP~Pgd~Sy~~~~~Ekd~il~~l~~ra~l~~~~~ns~-----~gi~cn~~qGAMY~fP~i~lP~kaie  408 (475)
T KOG0258|consen  334 VSGQKLVDLVVNPPKPGDPSYDLFSSEKDGILSSLRSRAKLTEDAFNSL-----EGISCNPVQGAMYLFPQISLPPKAIE  408 (475)
T ss_pred             ccchhhhceecCCCCCCCcchhhhhhhhHhHHHHHHHHhHHHHHHHhhc-----CceeeccCccceeecccccCCHHHHH
Confidence            000000          0011111  122456777777777777766655     3445556678888764222111    


Q ss_pred             -----chhHHH-HHHHHHHC-CeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          296 -----PVSAYD-ICLKMKER-GILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       296 -----~~~~~~-~~~~l~~~-Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                           +...++ .|..|++. ||-+.|++       .-++|.++   +... + ..++++++.-
T Consensus       409 ~A~~~~~~PD~FYc~~LLe~tGIcvVPGSGFGQ~~GtyH~R~Ti---Lp~~-~-~~i~~~~~fH  467 (475)
T KOG0258|consen  409 AAKALGIAPDEFYCLKLLEATGICVVPGSGFGQKEGTYHFRTTI---LPPG-L-EIIEKFKKFH  467 (475)
T ss_pred             HHHHhCCCCcHHHHHHHHHhcCeEEecCCCCCCCCceeEEEEee---cCch-h-HHHHHHHHHH
Confidence                 122233 45567765 99999873       34778872   2222 3 4555555443

>PF00464 SHMT: Serine hydroxymethyltransferase; InterPro: IPR001085 Synonym(s): Serine hydroxymethyltransferase, Serine aldolase, Threonine aldolase Serine hydroxymethyltransferase (SHMT) is a pyridoxal phosphate (PLP) dependent enzyme and belongs to the aspartate aminotransferase superfamily (fold type I) []

Probab=99.40  E-value=4.7e-11  Score=110.26  Aligned_cols=277  Identities=17%  Similarity=0.155  Sum_probs=153.9

Q ss_pred             HHHhcccCCC----eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC----Cccccc
Q 017259           28 ERLTSMFGYD----MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC----DNEAIR   98 (374)
Q Consensus        28 ~~l~~~~~~~----~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~----~~~~~~   98 (374)
                      ++.++.++.+    .+ +-..||+.|+.+++.++     .++|     |+|+..+...-|+..-......    ..... 
T Consensus        73 ~ra~~lF~~~~~~w~anvqp~SGs~An~av~~aL-----l~pG-----D~Im~l~l~~GGHlshg~~~~~~~~~~~~~~-  141 (399)
T PF00464_consen   73 ERAKELFGAEPKEWYANVQPHSGSQANLAVYMAL-----LKPG-----DTIMGLSLPHGGHLSHGSSVNFKKISASGLY-  141 (399)
T ss_dssp             HHHHHHHT-STTTEEEE---SSHHHHHHHHHHHH-----T-TT------EEEEEEGGGT--GGGT-TTSHSBSSHHHHH-
T ss_pred             HHHHHHhCCCcccceEEeecCCchHHHHHHHHHH-----Hhhc-----CcEEecChhhcccccccccccccccccccce-
Confidence            3334456888    55 77889999999999998     6778     9999999876444221111100    00000 


Q ss_pred             cCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           99 GFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        99 ~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                            .+....++      -|.+++++.++++  ++++|++-....  -...+    +++++++|++.|.+|++|-+|.
T Consensus       142 ------~~~~~y~~d~~~~~ID~d~l~~~a~~~--kPklIi~G~S~y--~~~~d----~~~~reIad~vga~l~~D~sH~  207 (399)
T PF00464_consen  142 ------FESVPYPVDPDTGLIDYDELEKLAKEH--KPKLIICGASSY--PRPID----FKRFREIADEVGAYLMADISHI  207 (399)
T ss_dssp             ------SEEEEEEB-TTTSSB-HHHHHHHHHHH----SEEEEE-SST--SS-------HHHHHHHHHHTT-EEEEE-TTT
T ss_pred             ------EEEEeeeeecCCCeECHHHHHHHHhhc--CCCEEEECchhc--cCccC----HHHHHHHHHhcCcEEEeccccc
Confidence                  00111111      1789999988876  666777755332  22344    8999999999999999999997


Q ss_pred             -CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeC--------------HHHHhhcCCCCCCCCC-CCCHHH
Q 017259          173 -GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD--------------KEVMLCIQPGEHGSTF-GGNPLA  234 (374)
Q Consensus       173 -~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~--------------~~~~~~~~~~~~~~~~-~~~~~~  234 (374)
                       |+.-.|. +. +.+. ..|+++.|  |+|.|.  +.|.++.+              +++.+++.....-... +...-.
T Consensus       208 ~GLIa~g~-~~-~P~~-~ADvvt~sThKtl~GP--rggiI~~~~~~~~~~~~~~~~~~~l~~~I~~avfP~~qg~~h~~~  282 (399)
T PF00464_consen  208 AGLIAGGL-FP-NPFP-YADVVTGSTHKTLRGP--RGGIILTNKGSKNVDKKGKEIDEELAEKIDSAVFPGLQGGPHMHR  282 (399)
T ss_dssp             HHHHHTTS-S---GCC-TSSEEEEESSGGG-SS--S-EEEEES-SEEEE-TTS-EEEHHHHHHHHHHHTTTT-SS--HHH
T ss_pred             ccceehhe-ec-Cccc-cceEEEeecccccccc--CceEEEEcCCccccCCcccccHHHHHHHhccccCCCcccCcchhH
Confidence             5432221 11 2223 36898777  888865  46678888              6777776643221111 223333


Q ss_pred             HHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          235 SAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       235 ~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      .++...++..+..   .++.+++.++.+.+.+.|.+.+..   ++.. ....+++++++....  .+..+..+.|.+.||
T Consensus       283 iaalAval~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~---v~~g-gTd~H~vlvd~~~~~--~~g~~a~~~Le~~gI  356 (399)
T PF00464_consen  283 IAALAVALKEALSPEFKEYAKQVVKNAKALAEALQERGFK---VVTG-GTDNHQVLVDLRSFG--IDGKEAEKALEEAGI  356 (399)
T ss_dssp             HHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT-E---EGGG-S-SSSEEEEEGGGGT--S-HHHHHHHHHHTTE
T ss_pred             HHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHHhhCCcE---EEEC-CCCCCeEEEEecccc--cchHHHHHHHHhcCe
Confidence            3344444554433   267788888888888888876543   2221 235678888875421  267788888889999


Q ss_pred             Eecc----C-----CCCEEEEecC----CCCCHHHHHHHHHH
Q 017259          312 LAKP----T-----HDTIVRLTPP----LSISSNELQEGSKA  340 (374)
Q Consensus       312 ~v~~----~-----~~~~lRi~~~----~~~~~e~i~~~~~~  340 (374)
                      .+..    .     ....|||..+    ....++|++++.+.
T Consensus       357 ~vnkn~iP~d~~~~~~sGlRlGT~~lT~rG~~e~dm~~iA~~  398 (399)
T PF00464_consen  357 IVNKNTIPGDRSPFVPSGLRLGTPALTRRGMKEEDMKEIAEL  398 (399)
T ss_dssp             E-EEE--TTTSTTTT-SEEEEESHHHHHTT--HHHHHHHHHH
T ss_pred             eecccccCCCCCCCCCCEEEECCHHHHhCCCCHHHHHHHHhh
Confidence            9953    1     2578999754    34567777766554

The pyridoxal-P group is attached to a lysine residue around which the sequence is highly conserved in all forms of the enzyme []. The enzyme carries out interconversion of serine and glycine using PLP as the cofactor. SHMT catalyses the transfer of a hydroxymethyl group from N5, N10- methylene tetrahydrofolate to glycine, resulting in the formation of serine and tetrahydrofolate. Both eukaryotic and prokaryotic SHMT enzymes form tight obligate homodimers and the mammalian enzyme forms a homotetramer [, ]. PLP dependent enzymes were previously classified into alpha, beta and gamma classes, based on the chemical characteristics (carbon atom involved) of the reaction they catalysed. The availability of several structures allowed a comprehensive analysis of the evolutionary classification of PLP dependent enzymes, and it was found that the functional classification did not always agree with the evolutionary history of these enzymes. Structure and sequence analysis has revealed that the PLP dependent enzymes can be classified into four major groups of different evolutionary origin: aspartate aminotransferase superfamily (fold type I), tryptophan synthase beta superfamily (fold type II), alanine racemase superfamily (fold type III), D-amino acid superfamily (fold type IV) and glycogen phophorylase family (fold type V) [, ]. In vertebrates, glycine hydroxymethyltransferase exists in a cytoplasmic and a mitochondrial form whereas only one form is found in prokaryotes.; GO: 0004372 glycine hydroxymethyltransferase activity, 0006544 glycine metabolic process, 0006563 L-serine metabolic process; PDB: 3GBX_B 3H7F_A 1YJS_A 2VMW_A 2W7H_A 2W7E_A 2VMY_B 2W7L_A 2VMZ_A 2VMS_A ....

>PF01212 Beta_elim_lyase: Beta-eliminating lyase; InterPro: IPR001597 This domain is found in many tryptophanases (tryptophan indole-lyase, TNase), tyrosine phenol-lyases (TPL) and threonine aldolases

Probab=99.40  E-value=5.5e-13  Score=119.30  Aligned_cols=193  Identities=19%  Similarity=0.140  Sum_probs=120.2

Q ss_pred             HHHHHHHhccccC-cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC-
Q 017259            3 ALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-   80 (374)
Q Consensus         3 a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y-   80 (374)
                      +|.+++.+.+... .++.++...++++++++.+|.+.++|++||+.|+..+++.+.     .++     +.|+...+++ 
T Consensus        10 ~m~~a~~~a~~gd~~Yg~D~~~~~l~~~i~~l~g~e~a~f~~sGT~An~~al~~~~-----~~~-----~~vi~~~~aHi   79 (290)
T PF01212_consen   10 AMLEAMAAANVGDDAYGEDPTTARLEERIAELFGKEAALFVPSGTMANQLALRAHL-----RPG-----ESVICADTAHI   79 (290)
T ss_dssp             HEEHHHHHTTSB-CCTTSSHHHHHHHHHHHHHHTSSEEEEESSHHHHHHHHHHHHH-----HTT-----EEEEEETTEHH
T ss_pred             HHHHHHHccccCCcccCCChhHHHHHHHHHHHcCCCEEEEeCCCChHHHHHHHHHH-----hcC-----Cceecccccee
Confidence            3444444433322 356677788899999999999999999999999999999995     344     7788776652 


Q ss_pred             CCcccccc-cccCCccccccCCCCCCC-ceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           81 HGRTLAAI-SMSCDNEAIRGFGPLLPG-HLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        81 hg~~~~~~-~~~~~~~~~~~~~~~~~~-~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +.+...+. .+++.-......    .+ ..    -|+++|++.+..   |..++++|.++.+.+..|+.+++.+++++|.
T Consensus        80 ~~~E~ga~~~~~G~~~~~l~~----~~~G~----l~~~~l~~~~~~~~~h~~~~~~v~le~t~~~~GG~~~s~~el~ai~  151 (290)
T PF01212_consen   80 HFDETGAIEELSGAKLIPLPS----DDDGK----LTPEDLEAAIEEHGAHHPQPAVVSLENTTELAGGTVYSLEELRAIS  151 (290)
T ss_dssp             HHSSTTHHHHHTTCEEEEEBE----CTGTB----B-HHHHHHHHHHHTGTSGGEEEEEEESSBTTTTSB---HHHHHHHH
T ss_pred             eeeccchhhHhcCcEEEECCC----cccCC----CCHHHHHHHhhhccccCCCccEEEEEecCcCCCCeeCCHHHHHHHH
Confidence            22222222 122210000000    00 11    179999999997   3468999999998887666666999999999


Q ss_pred             HHHHhcCCEEEEeccccC--CcccccCcccccCCCCCcEEEec--ccccCCccchhh-heeCHHHHhh
Q 017259          156 DLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSA-VLADKEVMLC  218 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~-~~~~~~~~~~  218 (374)
                      ++|++||++|+.|.+.-.  ....+.  ......-..|++++|  |.++  . ++|. +++++++++.
T Consensus       152 ~~a~~~gl~lhmDGARl~~a~~~~~~--~~~e~~~~~D~v~~~~tK~~g--~-~~Gavl~~~~~~i~~  214 (290)
T PF01212_consen  152 ELAREHGLPLHMDGARLANAAAALGV--SLAEIAAGADSVSFGGTKNGG--A-PGGAVLAGNKEFIAK  214 (290)
T ss_dssp             HHHHHHT-EEEEEETTHHHHHCHHHH--HHHHHHTTSSEEEEETTSTT---S-SSEEEEEESHHHHHH
T ss_pred             HHHHhCceEEEEehhhHHHhhhcccc--cHHHHhhhCCEEEEEEEcccc--c-ccceEEEechHHHHH
Confidence            999999999999988531  101111  111111345777554  7655  2 4444 6678875443

It is involved in the degradation of amino acids. The glycine cleavage system is composed of four proteins: P, T, L and H. In Bacillus subtilis, the P 'protein' is an heterodimer of two subunits. The glycine cleavage system catalyses the degradation of glycine. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor; CO(2) is released and the remaining methylamine moiety is then transferred to the lipoamide cofactor of the H protein; GO: 0016829 lyase activity, 0006520 cellular amino acid metabolic process; PDB: 3PJ0_C 2C44_C 2V0Y_A 2OQX_A 2V1P_A 1AX4_B 3LWS_A 1C7G_A 1V72_A 2YHK_B ....

>COG0076 GadB Glutamate decarboxylase and related PLP-dependent proteins [Amino acid transport and metabolism]

Probab=99.39  E-value=3.4e-11  Score=114.18  Aligned_cols=266  Identities=17%  Similarity=0.095  Sum_probs=154.6

Q ss_pred             HHHHHHhcccCC-C--eEEecCChHHHHHHHHHHHHHcccccc----cCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           25 VFAERLTSMFGY-D--MVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        25 ~l~~~l~~~~~~-~--~~~~~~~gs~a~~~al~~~~~~~~~~~----G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ++..++++.++. +  .-.||+|||+|+..++.+++..+....    +.+.+.-+|+ .+.+.|.....+..+.+-....
T Consensus       105 ~~v~~l~~l~~~~~~~~G~~t~GgTean~lal~aar~~~~~~~~~~~~~~~~~P~ii-~s~~aH~s~~Kaa~~lG~~~~~  183 (460)
T COG0076         105 RVVNMLSDLLGAPEEASGTFTSGGTEANLLALLAARERWRKRALAESGKPGGKPNIV-CSETAHFSFEKAARYLGLGLRR  183 (460)
T ss_pred             HHHHHHHHHhCCCCCCceEEEcChHHHHHHHHHHHHHHHHHHhhhcccccCCCCeEE-ecCcchhHHHHHHHHhCCCcee
Confidence            355556666655 4  358999999999999999986651111    1111112344 4444566666655554422211


Q ss_pred             ccCCCCCCCceecc--CC-CHHHHHHHHHhcCCcEEE--EEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVD--FG-DITALEKIFKESGDQIAG--FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~--~~-d~~~le~~l~~~~~~~~~--vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                               +..++  +. |++++++++.+.   +..  |+......++|.+-|    +++|.++|+++++++++|.|++
T Consensus       184 ---------v~~~~~~~~id~~~l~~~i~~~---t~~g~vV~~aGtT~~G~iDd----i~~ia~ia~~~~i~lHVDAA~G  247 (460)
T COG0076         184 ---------VPTVPTDYRIDVDALEEAIDEN---TIGGVVVGTAGTTDTGSIDD----IEELADIAEEYGIWLHVDAAFG  247 (460)
T ss_pred             ---------EEeccCccccCHHHHHHHHHhh---ccCceEEEEecCCCCCccCC----HHHHHHHHHHcCCcEEEEcccc
Confidence                     11111  11 899999999953   333  666667777898888    9999999999999999999999


Q ss_pred             CCcccccCcccc-cCCC-CCcEEEec--ccccCCccchhhheeCHH--HHhhcC--CCCCC----C--C--CCCCHHHHH
Q 017259          173 GLARSGRMLASD-WEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQ--PGEHG----S--T--FGGNPLASA  236 (374)
Q Consensus       173 ~~~~~g~~~~~~-~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~--~~~~~~--~~~~~----~--~--~~~~~~~~~  236 (374)
                      |+...-...... .+++ ..|-++++  |...... +.|+++.+++  +.+.+.  .....    .  +  ++.+.-..+
T Consensus       248 G~~~pf~~~~~~~~f~l~~vdSIt~d~HK~g~aP~-~~G~il~rd~e~l~~~~~~~~~yl~~~~~~~~ti~~sr~~~~~~  326 (460)
T COG0076         248 GFLLPFLEPDGRWDFGLEGVDSITVDGHKYGLAPI-GCGVVLFRDEEALRRILIFADYYLPGGGIPNFTILGSRPGRQAL  326 (460)
T ss_pred             ceeecccCccchhhcCCCCceEEEECcccccCCCC-CceEEEEECHHHhhhhhhcccccCCCCCcCceeEeeccchHHHH
Confidence            752210000001 1122 23455555  7666666 7788887654  333332  11111    1  1  122333556


Q ss_pred             HHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchh-HHHHHHHHHHCCeE
Q 017259          237 VAIASLDVIRDEKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS-AYDICLKMKERGIL  312 (374)
Q Consensus       237 aa~~al~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~-~~~~~~~l~~~Gi~  312 (374)
                      +..+.++.+..+++.   ++..++.+++.+.|++..    .+-....+..+.+.|..++..   + ..+..+.+.+.|..
T Consensus       327 ~~~~~l~~lG~eGy~~l~~~~~~~a~~la~~l~~~~----~~e~~~~p~l~~V~fr~~~~~---~~~~~~~~~~~~~gw~  399 (460)
T COG0076         327 ALYANLRRLGREGYRKLLDRTLELARYLAEELEKLG----DFELVNEPELPIVAFRLKDDE---DTLADLSERLDRRGWQ  399 (460)
T ss_pred             HHHHHHHHhCHhHHHHHHHHHHHHHHHHHHHHHhCC----CcEeecCCccceEEEEcCCcc---cchhchHHHHHhcCce
Confidence            677778877655544   444467777777776652    122223446667777764431   2 44556666667766


Q ss_pred             ecc
Q 017259          313 AKP  315 (374)
Q Consensus       313 v~~  315 (374)
                      +..
T Consensus       400 v~~  402 (460)
T COG0076         400 VPA  402 (460)
T ss_pred             eec
Confidence            643

>PLN02414 glycine dehydrogenase (decarboxylating)

Probab=99.36  E-value=1.1e-10  Score=119.02  Aligned_cols=275  Identities=13%  Similarity=0.078  Sum_probs=165.9

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ..++...+++++|.+  ++-++.++|.+.++++...+    ..+|   ++++|++.+..|.+...........       
T Consensus       150 l~~~Qt~ia~LtG~~~anaSL~d~aTAaaea~~~a~~----~~~g---~~~~VlVs~~~hP~~~~v~~t~a~~-------  215 (993)
T PLN02414        150 LLNYQTMITDLTGLPMSNASLLDEGTAAAEAMAMCNN----ILKG---KKKKFLIASNCHPQTIDVCQTRADG-------  215 (993)
T ss_pred             HHHHHHHHHHHhCCChhhEeecCChHHHHHHHHHHHh----cccC---CCCEEEEcCccCHhHHHHHHHhhhh-------
Confidence            446777788888765  79999999999998887664    3333   2388999888875544333332211       


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGR  179 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~  179 (374)
                        ....+..++.++.+    ..   .+.+.+++ ..+.+.+|.+.+    +++|.++||++|+++++ .++. +.+.   
T Consensus       216 --~GieV~~v~~~~~~----~~---~~~v~~vl-vq~P~~~G~v~d----v~~I~~~ah~~GaL~iV-aad~lal~~---  277 (993)
T PLN02414        216 --LGLEVVVADEKDFD----YS---SGDVCGVL-VQYPATDGEVLD----YAEFVKNAHANGVKVVM-ATDLLALTM---  277 (993)
T ss_pred             --cCCEEEEecchhhc----cc---cCceEEEE-EecCCCCeEEcC----HHHHHHHHHHcCCEEEE-EECHHHhcC---
Confidence              11223344432211    11   13455554 455567899988    99999999999999999 5443 1210   


Q ss_pred             CcccccCCCCCcEEEec--ccc---c-CCccchhhheeCHHHHhhcCCCCCC----------C--------------CCC
Q 017259          180 MLASDWEEVRPDMVILG--KAL---G-GGVIPVSAVLADKEVMLCIQPGEHG----------S--------------TFG  229 (374)
Q Consensus       180 ~~~~~~~~~~~d~~s~s--K~~---~-~G~~~~G~~~~~~~~~~~~~~~~~~----------~--------------~~~  229 (374)
                        ....-.+..|+++.+  |..   + ||- ..|++..++++...+-....+          .              ...
T Consensus       278 --l~~pge~GADi~vgsgqKwg~P~G~GGP-~aGflavr~~~~r~~PgriVG~s~d~~g~~~~~l~LqtReqhiRrEkaT  354 (993)
T PLN02414        278 --LKPPGEWGADIVVGSAQRFGVPMGYGGP-HAAFLATSQEYKRLMPGRIIGVSVDSSGKPALRMAMQTREQHIRRDKAT  354 (993)
T ss_pred             --CCCHhhccCcEEEECCCccccCCCCCCC-CeeEEEECHHHHhhCCCcccCcccCCCCCcccccccccccchhhhcccc
Confidence              001223456776543  432   2 455 478888888875533211000          0              001


Q ss_pred             CCHH---HHHHHHHHH--HHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          230 GNPL---ASAVAIASL--DVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       230 ~~~~---~~~aa~~al--~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      .|.-   ++.++++++  ..+..   +++.+++..+..+++++|+..+..   ...  ......+.+.++      +..+
T Consensus       355 sNict~qaL~A~la~~y~~~~g~~Gl~~Ia~ri~~la~~l~~~L~~~G~~---~~~--~~~f~~vt~~~~------~~~~  423 (993)
T PLN02414        355 SNICTAQALLANMAAMYAVYHGPEGLKTIAQRVHGLAGVFAAGLKKLGFQ---VQS--LPFFDTVKVKCS------DADA  423 (993)
T ss_pred             cchhHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhhcCCc---cCC--CCCcCeEEEecC------CHHH
Confidence            2332   333333322  11122   245677888888888888664322   111  111223333332      3578


Q ss_pred             HHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +.++|.++||.++....+.+|+|++..+|++||+.+++.|..
T Consensus       424 v~~~L~~~gI~l~~~~~~~lrvs~~e~~T~edId~L~~~l~~  465 (993)
T PLN02414        424 IADAAAKVGINLRVVDANTVTVSFDETTTLEDVDKLFKVFAG  465 (993)
T ss_pred             HHHHHHHCCCeeEEecCCeEEEEeeccCCHHHHHHHHHHHcc
Confidence            999999999999877677899999999999999999999963

>PRK12462 phosphoserine aminotransferase; Provisional

Probab=99.33  E-value=3.8e-10  Score=103.53  Aligned_cols=287  Identities=15%  Similarity=0.092  Sum_probs=170.4

Q ss_pred             CCcHHHHHHHHhcccCC-C--eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEE--EeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMFGY-D--MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV--SCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~-~--~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi--~~~~~yhg~~~~~~~~~~~   93 (374)
                      ...+.+..+.|.+.++. +  ++ ++..|||.+.+.+...+     ..+|     ++++  +..+.| |....-.+..- 
T Consensus        48 ~~i~~~~~~~Lr~Ll~~P~~y~Vlfl~GggT~~~ea~~~Nl-----l~~g-----~~~~~~~~tG~f-g~r~~~ea~~~-  115 (364)
T PRK12462         48 SSLLAQAEADLRDLLGIPDEYGVVFLQGGSSLQFSMIPMNF-----SRPG-----AAAPEYVTTGYW-SRKAIGEASRV-  115 (364)
T ss_pred             HHHHHHHHHHHHHHhCCCCCCeEEEEeccHHHHHHHHHHHc-----CCCC-----CcEEEEEeCCHH-HHHHHHHHHhc-
Confidence            44566778888887764 2  45 55555999999888888     4555     6443  444443 43222111110 


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ............+...+  .+++++    +. ++..+.+.+.+....+|...+         ++.+.++.++|+|-+-+ 
T Consensus       116 g~v~~~~~~~~~~~~~~--p~~~~~----~~-~~d~~~v~~t~NETstGv~~~---------~~~~~~~~llvvD~sS~-  178 (364)
T PRK12462        116 AAMRVVWDGAASGYRTL--PSLAEL----DW-DARAPFRHYVSNETVEGLQFP---------DAAGLPDSPLIADMSSD-  178 (364)
T ss_pred             CCceEecCcCCCCCCcC--CCHHHh----cc-CCCCcEEEEccCCCCceEecC---------cccccCCCeEEEEcCch-
Confidence            01111000000111111  134443    21 135677778777777787764         23334799999998865 


Q ss_pred             CcccccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHhhcCCC-----------CCCCC-CCCCHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVMLCIQPG-----------EHGST-FGGNPLASAVAI  239 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~~~~~~-----------~~~~~-~~~~~~~~~aa~  239 (374)
                      ++  +.++..+.+    |++..  -|+++ .- +++.++.++++.++....           ....+ ++++.+...++.
T Consensus       179 ~~--s~pid~~~~----dvi~agsQKnlg-P~-Gltvvivs~~al~~~~~~~p~~ldy~~~~~~~s~~nTPpv~~iy~l~  250 (364)
T PRK12462        179 FM--SRPFDVEAY----GMVYAHAQKNLG-PA-GVTVAIIRRALLERVPDTLPPMLDFRTHVEHRSNYNTPPVFAIYVMA  250 (364)
T ss_pred             hh--CCCCChHHc----cEEEeeccccCC-CC-ceEEEEECHHHHhhccccCCchhhHHHHHhcCCCCCCchHHHHHHHH
Confidence            31  333343333    66643  49998 33 456778888887765432           01223 367888888999


Q ss_pred             HHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          240 ASLDVIRDE-----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       240 ~al~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      .+++++.++     .+.++.++..+.+++.+.+....++..+.....+-.-+.|.+.+..   ...+|.+.+.++|+.--
T Consensus       251 ~~l~~i~~e~GGl~~~~~r~~~ka~~ly~~id~~~~~~~~~~~~~~RS~mnv~f~~~~~~---l~~~f~~~a~~~gl~~l  327 (364)
T PRK12462        251 LVLRWIRDEIGGVHAMRDINARKAAMLYATLDALNEVIDCHAHRAARSTMNVAFRFRQPR---LDTLFKEQSTEAGFCGL  327 (364)
T ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHhCCCcccCCCChhhcCcceEEEEcCCHH---HHHHHHHHHHHCCCccc
Confidence            999998665     4556666677777777766542222122212222233344555443   57789999999998886


Q ss_pred             cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++  -+.+|++..-..+.|+++++++-+++.-+
T Consensus       328 kGhr~vgg~Ras~yna~~~e~v~~L~~fm~~f~~  361 (364)
T PRK12462        328 SGHRSIGGIRASLYNAVSEQAVSRLCAFLKDFAI  361 (364)
T ss_pred             cCCcccCceEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            554  46799999889999999999998887655

>PRK05367 glycine dehydrogenase; Provisional

Probab=99.26  E-value=7.2e-10  Score=113.65  Aligned_cols=275  Identities=15%  Similarity=0.075  Sum_probs=166.2

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ..++...+++++|.+  ++-++.++|.+.+.++...+    ..+|   ++++|++.+..|..............+     
T Consensus       123 l~~~Qt~la~LtG~~~anaSl~d~aTAa~ea~~~a~~----~~~~---~~~~vlv~~~~hP~~~~v~~t~a~~~G-----  190 (954)
T PRK05367        123 LLNFQTMVADLTGLEIANASLLDEATAAAEAMALAKR----VSKS---KSNRFFVDDDVHPQTLDVLRTRAEPLG-----  190 (954)
T ss_pred             HHHHHHHHHHHHCCChhhccccccHHHHHHHHHHhhh----hccC---CCCEEEEcCccCHHHHHHHHHHHHhCC-----
Confidence            445677788888876  67889999999997777664    2222   128999998887544333222211111     


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM  180 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~  180 (374)
                          ..++.++.++  +++      ++.+.++ +..+.+.+|.+.+    +++|.++||++|+++++|..+..++.. . 
T Consensus       191 ----~ev~~~~~~~--d~~------~~~~~~v-lvq~p~~~G~i~d----~~~i~~~ah~~Gal~~vda~~~Al~~l-~-  251 (954)
T PRK05367        191 ----IEVVVGDAAK--ALD------HDDVFGV-LLQYPGTSGEVRD----YTALIAAAHARGALVAVAADLLALTLL-T-  251 (954)
T ss_pred             ----CEEEEecCcc--CCC------cccEEEE-EEecCCCCeeecc----HHHHHHHHHHcCCEEEEEehhhhccCC-C-
Confidence                2233344322  111      2356555 4455677898888    999999999999999999866322110 0 


Q ss_pred             cccccCCCCCcEEEec--cc---cc-CCccchhhheeCHHHHhhcCCCCCC----------CC-----------C---CC
Q 017259          181 LASDWEEVRPDMVILG--KA---LG-GGVIPVSAVLADKEVMLCIQPGEHG----------ST-----------F---GG  230 (374)
Q Consensus       181 ~~~~~~~~~~d~~s~s--K~---~~-~G~~~~G~~~~~~~~~~~~~~~~~~----------~~-----------~---~~  230 (374)
                         ..-++..|++..+  |.   ++ ||- ..|++..++++...+.+...+          ..           +   ..
T Consensus       252 ---~pge~GaDi~vgs~qkfg~P~g~GGP-~aGflavr~~~~r~lpgrivG~s~d~~g~~~~~lalqtReqhiRrekaTs  327 (954)
T PRK05367        252 ---PPGEMGADIAVGSAQRFGVPMGFGGP-HAAYFAVRDAYKRSMPGRIVGVSVDAAGNPALRLALQTREQHIRREKATS  327 (954)
T ss_pred             ---ChhhcCCCEEEeeCcccCCCCCCCCC-CEEEEEECHHHHhhCCCCeeeeecccCCCccccccccccccccccccccc
Confidence               1123456776443  43   22 344 467888888877666432111          00           0   10


Q ss_pred             C---HHHHHHHHHH--HHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          231 N---PLASAVAIAS--LDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       231 ~---~~~~~aa~~a--l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      |   ..++.+++++  +..+...   ++.+++..+..++.++|+..+..   ...  ......+.+.++  .   +..++
T Consensus       328 Nict~qaL~a~~a~~y~~~~g~~Gl~~Ia~~~~~la~~l~~~L~~~G~~---~~~--~~~f~~~~~~~~--~---~~~~i  397 (954)
T PRK05367        328 NICTAQVLLAVMASMYAVYHGPEGLKAIARRVHRLAAILAAGLRALGLE---VVH--DSFFDTLTVEVG--G---DAAAV  397 (954)
T ss_pred             ccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhcCcc---cCC--CCCCCeEEEeCC--C---CHHHH
Confidence            1   1122223322  2333333   45667777888888888664322   111  111122233332  1   57899


Q ss_pred             HHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      .++|.++||.++....+.+|++++..+|++|++.+++.|.
T Consensus       398 ~~~l~~~gi~~~~~~~~~l~is~~e~~t~~did~l~~~l~  437 (954)
T PRK05367        398 LARALAAGINLRRVDDDHVGISLDETTTREDLAALLAVFG  437 (954)
T ss_pred             HHHHHHCCceeccccCCEEEEEecccCCHHHHHHHHHHHc
Confidence            9999999999977667889999999999999999999997

>COG1982 LdcC Arginine/lysine/ornithine decarboxylases [Amino acid transport and metabolism]

Probab=99.23  E-value=5.9e-09  Score=98.86  Aligned_cols=296  Identities=11%  Similarity=0.071  Sum_probs=157.5

Q ss_pred             CCcHHHHHHHHhcccCCCeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Ccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~   97 (374)
                      .....+..+..++.+|.++.+| ++|.|.|+..++.++     ..+|     |.|++.+++ |-+....+.+++ .|.+.
T Consensus        69 ~G~i~eAqe~aA~~fgAd~tyFvvNGTS~ank~vi~a~-----~~~G-----D~VLvdRN~-HKSi~~glilaGa~Pvyl  137 (557)
T COG1982          69 EGPIKEAQELAARVFGADHTYFVVNGTSTANKAVINAV-----LTPG-----DKVLVDRNC-HKSIHHGLILAGATPVYL  137 (557)
T ss_pred             CccHHHHHHHHHHHhCCCceEEEECCccHHHHHHHHhh-----cCCC-----CEEEecCCc-cHHHHHHHHHcCCceEEe
Confidence            4456677777888889997655 555555555555555     6788     999999999 555444444444 34443


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCc-EEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC-c
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQ-IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL-A  175 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~-~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~-~  175 (374)
                      .....  +..-.+---+.+.+++++.+++.. ..+++.+|.+  .|....    +++|.+.++++++++..||+|.-+ .
T Consensus       138 ~p~~n--p~~gi~ggI~~~~~~~~l~~~~~~~k~~vitnpTY--dGv~~n----~~~i~~~~~~~~a~v~~deah~~~~~  209 (557)
T COG1982         138 EPSRN--PLYGIIGGIPLETFKEALLAHPDAEKLAVITNPTY--DGVCYN----LRKIVELLHHYGAWVLYDEAHPAHFD  209 (557)
T ss_pred             cCCCC--ccccccCCCCHHHHHHHHHhChhhheeEEEecCcc--ceEeec----HHHHHHHHhhcCceEEhhhcCccccc
Confidence            22111  101111111689999998887665 6666666644  388887    999999999999999999999732 2


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeC-------HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-------KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      ..+.. .-.......++++-|  |.+++.- ....+..+       +++.+.+.   ..++-+++-+.+++.-. -+.+.
T Consensus       210 ~~~~l-~~~~~~~~~~~~tqS~HK~l~alS-QaS~iHv~~~~~~~~~r~nea~~---~h~STSPsY~l~ASlD~-Ar~~~  283 (557)
T COG1982         210 FSPML-PESALNGGADFVTQSTHKLLAALS-QASMIHVKDGRAVNHERFNEALM---MHQSTSPSYPLMASLDV-ARMQE  283 (557)
T ss_pred             ccccC-cchhhhcCceEEEechhhhhhhhh-hhHHHhhCCCccCCHHHHHHHHH---HHccCCchHHHHHHHHH-HHHhh
Confidence            22221 112222345677777  5555332 33444444       23333333   22333444444444443 23222


Q ss_pred             hh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE---------------------EeeeEEEEeccCCCchhHHHH
Q 017259          247 DE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG---------------------RGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       247 ~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~---------------------~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      ..   ...+..-+..-.+++.+.+....++++....++                     .+.-+.+..+  ..|..+..+
T Consensus       284 ~~~G~~l~~~~~~~~i~~r~~~~~~~~~~~~~~~~~~~~~~~~~~whgf~~~~~~~~~lDP~Klti~tp--~~Gipg~~v  361 (557)
T COG1982         284 GNAGRELWQEVIDEAIDFRKALRRLINEIGFFPVLQPEKLDPPTGWHGFEDYADDQYFLDPTKLTITTP--EFGIPGAIV  361 (557)
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCCeeeccccccCCcccccccccccccceeccccEEEEecC--CCCCcHHHH
Confidence            21   221111222222333333332222211111111                     0111111111  225678999


Q ss_pred             HHHHHHCCeEeccCCCCEE--EEecCCCCCHHHHHHHHHHHH
Q 017259          303 CLKMKERGILAKPTHDTIV--RLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~~~~l--Ri~~~~~~~~e~i~~~~~~l~  342 (374)
                      .++|.++|++...++...+  -+++........++.+++.++
T Consensus       362 ~~~L~e~gii~e~~~d~~~lll~~~~~gk~~~lv~~L~~f~r  403 (557)
T COG1982         362 AKYLREHGIIPEETGDYSNLLLFSPGIGKWQTLVDRLLEFKR  403 (557)
T ss_pred             HHHHHHcCCeeeecCCceeeEEeeeccchHHHHHHHHHHHHH
Confidence            9999999999877654433  333332334455555555554

>PF00282 Pyridoxal_deC: Pyridoxal-dependent decarboxylase conserved domain; InterPro: IPR002129 Pyridoxal phosphate is the active form of vitamin B6 (pyridoxine or pyridoxal)

Probab=99.17  E-value=1.8e-09  Score=100.66  Aligned_cols=225  Identities=22%  Similarity=0.207  Sum_probs=122.9

Q ss_pred             HHHHHhcccCCC---------eEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           26 FAERLTSMFGYD---------MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        26 l~~~l~~~~~~~---------~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +.++|++++|.+         .-++|+|||+++..|+.+++.....   ..|.....+-+++.+..-|-....+..+.+-
T Consensus        84 vi~~l~~l~g~~~~~~~~~~~~G~~t~Ggt~anl~al~aAR~~~~~~~~~~~~~~~~~~~i~~s~~aH~S~~Kaa~~lGl  163 (373)
T PF00282_consen   84 VIRWLADLFGLPESFTFSKDAGGVFTSGGTEANLYALLAARERALPRSKAKGVEEIPKPVIYVSEQAHYSIEKAARILGL  163 (373)
T ss_dssp             HHHHHHHHTTGSGGTTSTTTSEEEEESSHHHHHHHHHHHHHHHHHHHHHHHTTTHCSSEEEEEETTS-THHHHHHHHTTS
T ss_pred             HHHHHHHHhCCcccccccCCCceeEeccchHHHHHHHHHHHHHHhhhhhhcccccccccccccccccccHHHHhcceeee
Confidence            445555555655         4689999999999999988765311   1221101133444444346665555555553


Q ss_pred             ccccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           94 NEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                      +            +..++.+     |+++|+++|.+.   +..+-+|+.+-....+|.+-+    +++|.++|+++++++
T Consensus       164 g------------~~~I~~~~~~~md~~~L~~~l~~~~~~g~~p~~vvat~Gtt~~Ga~D~----l~~i~~i~~~~~~wl  227 (373)
T PF00282_consen  164 G------------VRKIPTDEDGRMDIEALEKALEKDIANGKTPFAVVATAGTTNTGAIDP----LEEIADICEKYNIWL  227 (373)
T ss_dssp             E------------EEEE-BBTTSSB-HHHHHHHHHHHHHTTEEEEEEEEEBS-TTTSBB-S----HHHHHHHHHHCT-EE
T ss_pred             E------------EEEecCCcchhhhHHHhhhhhcccccccccceeeeccCCCcccccccC----HHHHhhhccccceee
Confidence            3            2222222     789999988752   122445555556666788888    999999999999999


Q ss_pred             EEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHH--HHhhcC--CCCCC-------------
Q 017259          166 IADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQ--PGEHG-------------  225 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~--~~~~~~--~~~~~-------------  225 (374)
                      ++|.+++|....-+.+.....++ ..|-++++  |.++..+ +.|+++.+++  +...+.  .....             
T Consensus       228 HVDaA~gg~~~~~~~~~~~~~gi~~adSit~d~HK~l~~P~-~~~~~l~r~~~~l~~~~~~~~~Yl~~~~~~~~~~~~~~  306 (373)
T PF00282_consen  228 HVDAAYGGSALLSPEYRHLLFGIERADSITIDPHKWLGVPY-GCGVLLVRDKSDLRDAFSINADYLGNDDRESDESYDYG  306 (373)
T ss_dssp             EEEETTGGGGGGHCTTGGGGTTGGGESEEEEETTTTTS-SS-S-EEEEESSGGGHHGGGEEEETCTT-S-SSS-GGGCEE
T ss_pred             eecccccccccccccccccccccccccccccchhhhhcCCc-cceeEEeecccchHHHhccChhhhcccccccccccccc
Confidence            99999997311111111111122 23445444  8888777 8888777653  222221  00011             


Q ss_pred             -CCCCCC-HHHHHHHHHHHHHHhhhcHHHHHHHH---HHHHHHHHHH
Q 017259          226 -STFGGN-PLASAVAIASLDVIRDEKLAERSAHL---GEELRQHLFK  267 (374)
Q Consensus       226 -~~~~~~-~~~~~aa~~al~~~~~~~~~~~~~~~---~~~~~~~l~~  267 (374)
                       .++..+ .+.....+..++.+..+++.+++++.   .+++.++|++
T Consensus       307 ~~tl~~SR~~~alk~w~~l~~~G~~G~~~~i~~~~~~a~~l~~~l~~  353 (373)
T PF00282_consen  307 DYTLQGSRRFRALKLWATLKSLGREGYRERIRRCIELARYLADRLRK  353 (373)
T ss_dssp             EGSSSSSGHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             cccccccccchHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHh
Confidence             112222 34455667777777666665555554   4444444433

Pyridoxal 5'-phosphate (PLP) is a versatile catalyst, acting as a coenzyme in a multitude of reactions, including decarboxylation, deamination and transamination [, , ]. PLP-dependent enzymes are primarily involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and in the synthesis or catabolism of neurotransmitters; pyridoxal phosphate can also inhibit DNA polymerases and several steroid receptors []. Inadequate levels of pyridoxal phosphate in the brain can cause neurological dysfunction, particularly epilepsy []. PLP enzymes exist in their resting state as a Schiff base, the aldehyde group of PLP forming a linkage with the epsilon-amino group of an active site lysine residue on the enzyme. The alpha-amino group of the substrate displaces the lysine epsilon-amino group, in the process forming a new aldimine with the substrate. This aldimine is the common central intermediate for all PLP-catalysed reactions, enzymatic and non-enzymatic []. A number of pyridoxal-dependent decarboxylases share regions of sequence similarity, particularly in the vicinity of a conserved lysine residue, which provides the attachment site for the pyridoxal-phosphate (PLP) group [, ]. Among these enzymes are aromatic-L-amino-acid decarboxylase (L-dopa decarboxylase or tryptophan decarboxylase), which catalyses the decarboxylation of tryptophan to tryptamine []; tyrosine decarboxylase, which converts tyrosine into tyramine; and histidine decarboxylase, which catalyses the decarboxylation of histidine to histamine []. These enzymes belong to the group II decarboxylases [, ].; GO: 0016831 carboxy-lyase activity, 0030170 pyridoxal phosphate binding, 0019752 carboxylic acid metabolic process; PDB: 3MC6_A 1XEY_A 1ES0_B 2OKK_A 2JIS_B 2QMA_A 3MAF_B 3MAD_B 3MAU_A 3MBB_A ....

>COG3033 TnaA Tryptophanase [Amino acid transport and metabolism]

Probab=99.15  E-value=4.5e-08  Score=86.55  Aligned_cols=321  Identities=16%  Similarity=0.171  Sum_probs=186.6

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..+..+..|++...+.+|++.++.|.-|-.|-+..+..+.+.+-..+|     .+.++++..|+-.+.+-+...+ ...+
T Consensus        76 agsrs~~~L~~avkdifGfq~~iPthQGRgAE~Il~~i~ik~~~~~pg-----~~~~~~sN~~FdTTr~h~~~ng-~~~~  149 (471)
T COG3033          76 AGSRSYYALADAVKDIFGFQYTIPTHQGRGAENILIPILIKKGEQEPG-----SKMVAFSNYHFDTTRGHIQING-ATPR  149 (471)
T ss_pred             cccccHHHHHHHHHHhcCceeeeeccCCccHHHHHHHHHhhhccccCC-----ccccccccceecchhHHHHhcC-Cccc
Confidence            347788899999999999999999999998888888888655444455     6666666554332332222221 1111


Q ss_pred             ccCCCCCCCce-eccCC---CHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHL-KVDFG---DITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~-~~~~~---d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+.+.-.+-. ..|+-   |++.|++.|++-+ +++..|++.-.+|+-|+-.-|-.-++++.++|++|||+++.|.+..
T Consensus       150 n~~~~ea~d~~~~~pFKGd~D~~kLe~lidevG~~nvp~I~~tiT~NsagGQpVSm~n~r~v~~ia~ky~ipvv~Da~Rf  229 (471)
T COG3033         150 NVYVDEAFDTEVKYPFKGNFDLEKLERLIDEVGADNVPYIVLTITNNSAGGQPVSMANMKAVYEIAKKYDIPVVMDAARF  229 (471)
T ss_pred             cccccccccccccCCCCCccCHHHHHHHHHHhCcccCcEEEEEEeccccCCCcchHHhHHHHHHHHHHcCCcEEeehhhh
Confidence            11111111111 22332   8999999999755 4565555555566656666688999999999999999999998753


Q ss_pred             -C---Cccccc----Ccccc-----cCCCCCcEEEec-ccccCCccchhh-heeCHH----HHhhcCCC----CCCCCCC
Q 017259          173 -G---LARSGR----MLASD-----WEEVRPDMVILG-KALGGGVIPVSA-VLADKE----VMLCIQPG----EHGSTFG  229 (374)
Q Consensus       173 -~---~~~~g~----~~~~~-----~~~~~~d~~s~s-K~~~~G~~~~G~-~~~~~~----~~~~~~~~----~~~~~~~  229 (374)
                       +   |...-+    .+++.     .+ -+.|..++| |-=  |++.+|. +..+++    +...++..    ....+|+
T Consensus       230 aENaYFIk~rE~gYrd~sI~~IarEm~-sYaD~~~mS~KKD--~lvnmGGfl~~~D~~~fDvy~~~~~~~V~~eG~~tYG  306 (471)
T COG3033         230 AENAYFIKQREPGYRDWSIEEIAREMY-SYADGCTMSAKKD--GLVNMGGFLCFKDDSFFDVYEECRTLVVVQEGFPTYG  306 (471)
T ss_pred             hhhhhhhhhcCcccccccHHHHHHHHH-hhhhhheeecccc--ceeccccEEEecCccHHHHHHHHHhheEeeccccccC
Confidence             1   111100    11111     01 134555565 311  2225554 445544    44444432    1223443


Q ss_pred             C-CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe----ccCCC-chhHHHHH
Q 017259          230 G-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF----DKTAL-PVSAYDIC  303 (374)
Q Consensus       230 ~-~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~~~~~~~  303 (374)
                      + +.=.+.+....|...-+.++.++.-...+++.+.|.+.     +++...+..|+-+.++.    |.-+. .-.++.++
T Consensus       307 gl~GrdmealAvGL~e~~~~~yl~~Rv~Qv~YL~~~l~~~-----GVpi~~paGGHavfvda~~~lphip~eqFpaqala  381 (471)
T COG3033         307 GLAGRDMEALAVGLREGVNFDYLAHRVAQVQYLADGLEEA-----GVPIVQPAGGHAVFVDAGKFLPHIPAEQFPAQALA  381 (471)
T ss_pred             cccchhHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHhc-----CCeeEecCCCceEEeehhhhcCCCChhhCcHHHHH
Confidence            2 22333344444554445577888888888898888876     34322333344444442    21110 12355666


Q ss_pred             HHHH-HCCeEeccC-----------------CCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          304 LKMK-ERGILAKPT-----------------HDTIVRLTPPL-SISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       304 ~~l~-~~Gi~v~~~-----------------~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      -.|- +.||-....                 .-..+|++++. +-|.+++|..+++++++.+ .-+++.
T Consensus       382 ~ely~e~GiRavElG~~~~~rd~ktg~q~~~~~elvRltipRrtYt~~HmD~V~~a~~~l~e-~~~~ik  449 (471)
T COG3033         382 CELYKEAGIRAVELGSFSLGRDPKTGKQHPPPAELVRLTIPRRTYTQTHMDFVIEAFKALKE-NAEDIK  449 (471)
T ss_pred             HHHHHHhCeeeeeeeceecccCCCccccCCCchheeeEeccccccchhHHHHHHHHHHHHHh-ccccCC
Confidence            6664 557655321                 13678998764 4589999999999999887 544433

>TIGR00461 gcvP glycine dehydrogenase (decarboxylating)

Probab=98.94  E-value=1.4e-07  Score=95.83  Aligned_cols=275  Identities=14%  Similarity=0.081  Sum_probs=157.7

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ..++...+++++|.+  ++=+..++|.+.++++++.+    ..++   ++++|++.+..+............        
T Consensus       111 l~e~Qt~i~eLtGm~~aNaSl~d~atA~aEa~~~a~~----~~~~---~~~~vlv~~~~hP~~~~v~~t~a~--------  175 (939)
T TIGR00461       111 LLNFQTVVSDLTGLPVANASLLDEGTAAAEAMALSFN----VSKK---KANKFFVAKDLHPQTKSVLHTRAK--------  175 (939)
T ss_pred             HHHHHHHHHHHHCCChhhhhccchhhHHHHHHHHHHH----hhcC---CCCEEEECCCCCcchHHHHHHHHH--------
Confidence            445777888888887  55778888888887666553    2222   237888887775332211111111        


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM  180 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~  180 (374)
                       +...+++.+   |+++|++.+     .++++++.. .|..|.+.+    +++|.+++|++|.+++++.-...+...-. 
T Consensus       176 -~~g~~v~~~---~~~~l~~~~-----~~~~v~~q~-Pn~~G~ied----~~~i~~~~h~~gal~~~~ad~~al~ll~~-  240 (939)
T TIGR00461       176 -PFGIEVIVV---DCSDIKKAV-----DVFGCLLQY-PATDGSILD----YKQLIDALHSHKSLVSVAADLMALTLLTP-  240 (939)
T ss_pred             -hcCcEEEEE---cHHHHhhcC-----CEEEEEEEC-CCCCeEEec----HHHHHHHHHHcCCEEEEEechHHhCCcCC-
Confidence             111222222   455555444     366665533 355677776    99999999999999998643332211111 


Q ss_pred             cccccCCCCCcEE-Eeccccc-----CCccchhhheeCHHHHhhcCCCC----------------------------CCC
Q 017259          181 LASDWEEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPGE----------------------------HGS  226 (374)
Q Consensus       181 ~~~~~~~~~~d~~-s~sK~~~-----~G~~~~G~~~~~~~~~~~~~~~~----------------------------~~~  226 (374)
                          .-++..|++ ..+|.||     ||- ..|++..++++...+-...                            ...
T Consensus       241 ----Pge~GaDi~vg~~q~fg~p~g~GGP-~aG~~a~~~~l~r~lPgrivG~s~D~~G~~~~~l~LqtReqhIrRekAtS  315 (939)
T TIGR00461       241 ----PGHYGADIVLGSSQRFGVPMGYGGP-HAAFFAVKDEYNRKMPGRIVGVSKDALGNTALRLALQTREQHIRRDKATS  315 (939)
T ss_pred             ----HHHcCCcEEeeCCCccCCCCCCCCC-ceeeeeecHhhHhhCCCCceeEEecCCCCccceeecccccccccccccCc
Confidence                112344665 2335443     343 3566777777665543210                            001


Q ss_pred             CCCCCHHHHHHHHHH--HHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          227 TFGGNPLASAVAIAS--LDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       227 ~~~~~~~~~~aa~~a--l~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      +.+.+ -++.|.+++  +..+..+   ++-+++..+..++.+.|++.+...   +  ......-+.+.++..    +..+
T Consensus       316 NICt~-qaL~a~~a~~Y~~~~G~~GL~~iA~~~~~~a~~l~~~L~~~G~~~---~--~~~fF~~~~v~~~~~----~~~~  385 (939)
T TIGR00461       316 NICTA-QVLLANVASSYCVYHGPKGLKNIARRIHSLTSILANGLENDPHEL---I--NKTWFDTLTVKVGNG----ISSE  385 (939)
T ss_pred             chhHH-HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHhCCCcc---c--CCCccceEEEEeCCC----CHHH
Confidence            11111 122222222  3444444   345566667777777777743221   1  111111122223222    5789


Q ss_pred             HHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      +.+.+.++||.++....+.+++++...+|++|++.+++.+.
T Consensus       386 i~~~~~~~gi~l~~~~~~~i~~s~~E~~t~~di~~l~~~~~  426 (939)
T TIGR00461       386 LLKAAEEFNINLRAVDTTTVGIALDETTTKADVENLLKVFD  426 (939)
T ss_pred             HHHHHHHCCCeeeecCCCEEEEEeecCCCHHHHHHHHHHhc
Confidence            99999999999988767899999999999999999999985

This apparently ubiquitous enzyme is found in bacterial, mammalian and plant sources. The enzyme catalyzes the reaction: GLYCINE + LIPOYLPROTEIN = S-AMINOMETHYL-DIHYDROLIPOYLPROTEIN + CO2. It is part of the glycine decarboxylase multienzyme complex (GDC) consisting of four proteins P, H, L and T. Active site in E.coli is located as the (K) residues at position 713 of the SEED alignment.

>KOG3846 consensus L-kynurenine hydrolase [Amino acid transport and metabolism]

Probab=98.94  E-value=1.4e-07  Score=81.77  Aligned_cols=287  Identities=15%  Similarity=0.106  Sum_probs=170.5

Q ss_pred             eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceec-c-----
Q 017259           38 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV-D-----  111 (374)
Q Consensus        38 ~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-----  111 (374)
                      ++-+.++-+--+...+..+-+     +  .++|-+|+....+|.+...+..+....-+.    .+. ..+..+ |     
T Consensus       130 EvavmNsLTvNlh~Ll~sFyK-----P--TekR~KILlE~kaFPSDhYAiesQ~~lhG~----~~e-~sm~~iePREGEe  197 (465)
T KOG3846|consen  130 EVAVMNSLTVNLHSLLISFYK-----P--TEKRFKILLEKKAFPSDHYAIESQCKLHGI----SPE-NSMIQIEPREGEE  197 (465)
T ss_pred             hhhhHhhhhhHHHHHHHHhcC-----C--cchhhhhhhccCCCCchHHHHHhhhhhcCC----ChH-HheEEeccccccc
Confidence            455566665444444444422     2  234578898888887766555433221111    010 001111 1     


Q ss_pred             CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCc
Q 017259          112 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD  191 (374)
Q Consensus       112 ~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d  191 (374)
                      .-..+++-+.|+++++.++.++++.++..+|...+    +.+|...-+..|+++-+|-+|+ ++  .-++-...|+++.-
T Consensus       198 tlRteDILd~IEkngDeiA~v~fSGvqyYTGQ~Fd----i~aIT~Agq~kgc~VGfDLAHA-vg--NVpL~LHdWgVDFA  270 (465)
T KOG3846|consen  198 TLRTEDILDTIEKNGDEIALVCFSGVQYYTGQYFD----IGAITFAGQFKGCLVGFDLAHA-VG--NVPLQLHDWGVDFA  270 (465)
T ss_pred             chhHHHHHHHHHhcCCeEEEEEeecceeecccccc----hhhhhhcccCCCcEechhhhhh-hc--CCceEEeecCCceE
Confidence            11467787888888899999999999999999998    9999988888999999999997 21  11222233444333


Q ss_pred             EEEecccccCCccchhhheeCHHHHhhcCCC------------------------CCCCCC-CCCHHHHHHHHHHHHHHh
Q 017259          192 MVILGKALGGGVIPVSAVLADKEVMLCIQPG------------------------EHGSTF-GGNPLASAVAIASLDVIR  246 (374)
Q Consensus       192 ~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------------------------~~~~~~-~~~~~~~~aa~~al~~~~  246 (374)
                      ..+.-|-+.+|.-++|.+...++......+.                        ..+... .++....++.+++|+...
T Consensus       271 CWCSYKYlnaGaGgIgGlFvHekh~~~~~prl~GWwgh~~s~RF~Mdnvl~lipGa~GfRiSNPpi~~v~al~~SLe~F~  350 (465)
T KOG3846|consen  271 CWCSYKYLNAGAGGIGGLFVHEKHTKESLPRLAGWWGHDPSKRFQMDNVLELIPGALGFRISNPPIIDVVALRSSLELFA  350 (465)
T ss_pred             EEeeecccccCCCccceeeeehhhhcchhhHHhhhccCCcchhhhhccccccCccccccccCCCcHhHHHHHHhhHHHHH
Confidence            3344476654332566666655443332211                        112222 335555666777777654


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCcee---------------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVK---------------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      .-. ...++++.-.+...|+.+....-+...               .++.+|--..+.++.     ....+.+.|.++|+
T Consensus       351 q~~-~~~lRkrS~lLTgYleyL~k~~~g~~~~~rt~Kl~~~IiTP~~~~erGcQLsl~Fss-----p~~~vfqeL~krGv  424 (465)
T KOG3846|consen  351 QFN-INELRKRSLLLTGYLEYLLKASKGYKHPLRTEKLFFTIITPTSTDERGCQLSLYFSS-----PTPKVFQELHKRGV  424 (465)
T ss_pred             Hhh-HHHHhhhhhhHHhHHHHHHHHhcccCchhhhcceeEEEeCCcccccccceEEEEeCC-----CchHHHHHHHHcCe
Confidence            422 344444444444433333211101110               122223333333332     35789999999999


Q ss_pred             EeccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          312 LAKPTHDTIVRLTP-PLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       312 ~v~~~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ++....++.||++| ++.++-.|+..+++.|.++++ .++
T Consensus       425 ~~DkR~PNvIRvAPvpLYN~f~Dvy~f~n~L~e~~d-~~e  463 (465)
T KOG3846|consen  425 IGDKRRPNVIRVAPVPLYNTFSDVYIFVNALNEAMD-KLE  463 (465)
T ss_pred             eccccCCCceEeecchhhccHHHHHHHHHHHHHHHH-Hhh
Confidence            99988899999987 688999999999999999988 653

>PF03841 SelA: L-seryl-tRNA selenium transferase; InterPro: IPR018319 In prokaryotes, the incorporation of selenocysteine as the 21st amino acid, encoded by TGA, requires several elements: SelC is the tRNA itself, SelD acts as a donor of reduced selenium, SelA modifies a serine residue on SelC into selenocysteine, and SelB is a selenocysteine-specific translation elongation factor

Probab=98.93  E-value=9.3e-10  Score=98.99  Aligned_cols=196  Identities=18%  Similarity=0.190  Sum_probs=56.5

Q ss_pred             HHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC---Cc--ccccccccCCcccc
Q 017259           23 FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH---GR--TLAAISMSCDNEAI   97 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh---g~--~~~~~~~~~~~~~~   97 (374)
                      +..+++.+++.+|++.+++++|...|+.+++..+.      +|     .+||+..+.--   |.  ....+..++.--  
T Consensus        49 ~~~v~~ll~~ltgAeaA~VvNnnaAAv~L~l~~la------~~-----~EvIvsRGelVeiGgsFRip~vm~~sGa~l--  115 (367)
T PF03841_consen   49 YAHVEELLCELTGAEAALVVNNNAAAVLLALNTLA------KG-----KEVIVSRGELVEIGGSFRIPDVMRQSGARL--  115 (367)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccccccccccccccccccccccc------cc-----cccccccccccccccccccccccccccccc--
Confidence            45577888888999999999999999998887763      34     67877766431   11  111111111000  


Q ss_pred             ccCCCCCCCceeccC--CCHHHHHHHHHhcCCcEEEEEEccccCC--CCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           98 RGFGPLLPGHLKVDF--GDITALEKIFKESGDQIAGFLFEPIQGE--AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~--~d~~~le~~l~~~~~~~~~vi~~~~~~~--~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                               ++.-..  ..+++.+++|.   ++|++++-.+.+|.  .|..  ..-.++++.+++++|++++|+|-.-+.
T Consensus       116 ---------vEVGttN~t~~~Dye~AI~---e~Ta~ll~Vh~Sn~~i~GFt--~~~~~~el~~la~~~~lp~i~DlgsG~  181 (367)
T PF03841_consen  116 ---------VEVGTTNRTHLSDYEKAIT---ENTAALLKVHTSNFRIQGFT--GEVSLEELAELAKEHGLPVIVDLGSGL  181 (367)
T ss_dssp             -----------------------------------------------------------HHHHHHHHHT--EEEE-TTHH
T ss_pred             ---------ccccccccccccccccccc---cccccccccccccccccccc--ccccHHHHHHHHhhcCCcEEEECCCCC
Confidence                     111111  14778899998   67888766554333  1111  222399999999999999999977531


Q ss_pred             ------CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          174 ------LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       174 ------~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                            ++..+++.........+|+++||  |-++|.-  .|.+++.++++++++.......+-..-+.+++..++++..
T Consensus       182 l~dl~~~gl~~Ep~v~~~~~~GaDlV~fSGdKlLGGPQ--aGiI~Gkk~lI~~lk~~pl~RalrvdK~tla~L~atL~~Y  259 (367)
T PF03841_consen  182 LVDLSPYGLPDEPTVQEYLAAGADLVTFSGDKLLGGPQ--AGIIVGKKELIEKLKKHPLGRALRVDKLTLAALEATLRLY  259 (367)
T ss_dssp             HHHHHTT----------CCCCT-SEEEEETTSSSSS-S---EEEEEEHHHHHHHHHHHHTTT-B--HHHHHHHHHHHHH-
T ss_pred             CcCcccccCccccHHHHHhhcCCCEEEEECCCcCCCCC--eEEEEeCHHHHHHHhhCCCcceEeeCHHHHHHHHHHHHHH
Confidence                  22233343334455678999999  7787653  5789999999999876444555566778888888888875


Q ss_pred             hh
Q 017259          246 RD  247 (374)
Q Consensus       246 ~~  247 (374)
                      .+
T Consensus       260 ~~  261 (367)
T PF03841_consen  260 LD  261 (367)
T ss_dssp             --
T ss_pred             HH
Confidence            43

3-prime or 5-prime non-coding elements of mRNA have been found as probable structures for directing selenocysteine incorporation. This family describes SelA. A close homologue of SelA is found in Helicobacter pylori, but all other required elements are missing and the protein is shorter at the N terminus than SelA from other species. The trusted cut-off is set above the score generated for Helicobacter pylori putative SelA.; PDB: 2AEV_A 2AEU_A.

>PF06838 Met_gamma_lyase: Methionine gamma-lyase ; InterPro: IPR009651 This family represents the aluminium resistance protein, which confers resistance to aluminium in bacteria []

Probab=98.93  E-value=5.3e-08  Score=86.91  Aligned_cols=185  Identities=16%  Similarity=0.160  Sum_probs=108.5

Q ss_pred             cCcCCC-CCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           14 SSRAFY-NDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        14 ~~~~~~-~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      ++++++ +..++.|++-.++.++.|..++   .-|||+|+..+|..+     ..+|     |+++...+.=.-.....+.
T Consensus        46 tTGYGY~D~GRd~le~iyA~vfgaE~ALVRpq~vSGTHAi~~~Lfg~-----LrpG-----D~ll~~tG~PYDTL~~VIG  115 (403)
T PF06838_consen   46 TTGYGYDDIGRDKLERIYADVFGAEDALVRPQFVSGTHAIALALFGV-----LRPG-----DELLSITGKPYDTLEEVIG  115 (403)
T ss_dssp             --TT-TT-HHHHHHHHHHHHHCT-SEEEEETTS-SHHHHHHHHHHHH-------TT------EEEESSSS--CCHHHHHT
T ss_pred             CCcCCCCCccHHHHHHHHHHHhCchhhhhcccccchHHHHHHHHHhc-----CCCC-----CeEEEcCCCchhhHHHHhC
Confidence            334444 4446669999999999998776   457999999999988     5667     9998776542112222222


Q ss_pred             ccCC--ccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh--
Q 017259           90 MSCD--NEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--  160 (374)
Q Consensus        90 ~~~~--~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~--  160 (374)
                      +.++  .+..    .+......++..     |.+.++++++   ++++++++--.-+..-.--.+-+.++++.+++|+  
T Consensus       116 ~~g~~~GSL~----e~Gi~Y~~v~L~~dg~~D~~~i~~~~~---~~tk~v~IQRSrGYs~R~sl~i~~I~~~i~~vk~~~  188 (403)
T PF06838_consen  116 IRGNGPGSLK----EFGIKYREVPLTEDGTIDWEAIKKALK---PNTKMVLIQRSRGYSWRPSLTIEEIKEIIKFVKEIN  188 (403)
T ss_dssp             SSSSSSSSTG----GGT-EEEE--B-TTSSB-HHHHHHHHH---TTEEEEEEE-S-TTSSS----HHHHHHHHHHHHHH-
T ss_pred             CCCCCCCChH----HhCceeEEEeecCCCCcCHHHHHHhhc---cCceEEEEecCCCCCCCCCCCHHHHHHHHHHHHhhC
Confidence            2221  1111    111111122221     7899999998   6899998875433322222366778888888877  


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchh-hheeCHHHHhhcC
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS-AVLADKEVMLCIQ  220 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G-~~~~~~~~~~~~~  220 (374)
                      -++++.+|++|++|...-++.     .+..|++  |+-|..|||+++.| |+++++++.+...
T Consensus       189 p~~iifVDNCYGEFvE~~EP~-----~vGADl~aGSLIKNpGGgiAptGGYIaGr~~lVe~~a  246 (403)
T PF06838_consen  189 PDVIIFVDNCYGEFVETQEPT-----EVGADLMAGSLIKNPGGGIAPTGGYIAGRKDLVERAA  246 (403)
T ss_dssp             TTSEEEEE-TTTTTTSSS-GG-----GGT-SEEEEETTSGGGTTT-SS-EEEEESHHHHHHHH
T ss_pred             CCeEEEEeCCcceeccccCcc-----ccchhheeccceeCCCCCccCcCCEEechHHHHHHHH
Confidence            478999999999885444432     2456766  77799999987776 5889999888764

; PDB: 3JZL_A 3I16_C 3GWP_A 3FD0_B 3HT4_F.

>COG1921 SelA Selenocysteine synthase [seryl-tRNASer selenium transferase] [Amino acid transport and metabolism]

Probab=98.91  E-value=8.8e-08  Score=87.12  Aligned_cols=195  Identities=16%  Similarity=0.148  Sum_probs=124.2

Q ss_pred             HHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC----CCCcccccccccCCccccc
Q 017259           23 FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC----FHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~----yhg~~~~~~~~~~~~~~~~   98 (374)
                      ...+++.++..++.+.++.+++.+.|+..++..+.     + +     .++++..+.    +|.......-.++.. +. 
T Consensus        70 ~~~~~~~~~~~~~aea~~ivnnn~aAVll~~~al~-----~-~-----~EvVis~g~lV~gg~~~v~d~~~~aG~~-l~-  136 (395)
T COG1921          70 LTELAELLCGLTGAEAAAIVNNNAAAVLLTLNALA-----E-G-----KEVVVSRGELVEGGAFRVPDIIRLAGAK-LV-  136 (395)
T ss_pred             HHHHHHHHhcccchhheeeECCcHHHHHHHHhhhc-----c-C-----CeEEEEccccccCCCCChhHHHHHcCCE-EE-
Confidence            33577777777788999999999999988877663     2 2     566665432    222222222222210 00 


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEcccc--CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQ--GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~--~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                             .+-........+++.+|+   +++++++=...+  +-++.+ +    .+++.++||+||+++|+|.+-+...+
T Consensus       137 -------EvG~tn~t~~~d~~~AIn---e~ta~llkV~s~~~~f~~~l-~----~~~l~~ia~~~~lpvivD~aSg~~v~  201 (395)
T COG1921         137 -------EVGTTNRTHLKDYELAIN---ENTALLLKVHSSNYGFTGML-S----EEELVEIAHEKGLPVIVDLASGALVD  201 (395)
T ss_pred             -------EecccCcCCHHHHHHHhc---cCCeeEEEEeeccccccccc-c----HHHHHHHHHHcCCCEEEecCCccccc
Confidence                   011111125788999998   455554443332  333433 3    89999999999999999998754322


Q ss_pred             cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          177 SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                       ..+-.-......+|+++||  |-|+|.  +-|.+++++++++.++.......+-.....+++..++|+.+...
T Consensus       202 -~e~~l~~~la~GaDLV~~SgdKllgGP--qaGii~GkKelI~~lq~~~l~Ralrv~K~tla~l~~aLe~y~~~  272 (395)
T COG1921         202 -KEPDLREALALGADLVSFSGDKLLGGP--QAGIIVGKKELIEKLQSHPLKRALRVDKETLAALEAALELYLQP  272 (395)
T ss_pred             -cccchhHHHhcCCCEEEEecchhcCCC--ccceEechHHHHHHHHhhhhhhhhhcCcHhHHHHHHHHHHHcCc
Confidence             1111112334578999998  777654  56779999999999987655555556777888888888887664

>PF05889 SLA_LP_auto_ag: Soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen); InterPro: IPR008829 This family consists of several eukaryotic and archaeal proteins which are related to the Homo sapiens soluble liver antigen/liver pancreas antigen (SLA/LP autoantigen)

Probab=98.86  E-value=2.2e-07  Score=84.51  Aligned_cols=225  Identities=14%  Similarity=0.107  Sum_probs=130.8

Q ss_pred             CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc--ccCc--ccccCCCC
Q 017259          114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS--GRML--ASDWEEVR  189 (374)
Q Consensus       114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~--g~~~--~~~~~~~~  189 (374)
                      |.+++|+++++.++...+.+++++....+...   +.+++|+++|++|||+.|+..||+ ..-.  -...  +. ..|..
T Consensus       140 d~~~ie~~i~~~G~~~iLcvltttscfapr~~---D~i~~IakiC~~~~IPhlvNnAYg-vQ~~~~~~~i~~a~-~~GRv  214 (389)
T PF05889_consen  140 DLEAIEAKIEELGADNILCVLTTTSCFAPRLP---DDIEEIAKICKEYDIPHLVNNAYG-VQSSKCMHLIQQAW-RVGRV  214 (389)
T ss_dssp             HHHHHHHHHHHHCGGGEEEEEEESSTTTTB-------HHHHHHHHHHHT--EEEEGTTT-TT-HHHHHHHHHHH-HHSTC
T ss_pred             cHHHHHHHHHHhCCCCeEEEEEecCccCCCCC---ccHHHHHHHHHHcCCceEEccchh-hhHHHHHHHHHHHH-hcCCc
Confidence            68899999987766667777777766666543   459999999999999999999996 2000  0000  00 11222


Q ss_pred             C-cEEEecccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHH
Q 017259          190 P-DMVILGKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHL  265 (374)
Q Consensus       190 ~-d~~s~sK~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l  265 (374)
                      + ++-+..|.|--|. +.+.+.+ .+..+..+....-+-.+  ..+..-.....+.+...  .......++...++.++|
T Consensus       215 da~vqS~dkNF~VPv-Ggai~As~~~~~i~~vs~~YpGRas--~sp~ld~~itLl~LG~~g~~~ll~~r~~~f~~l~erl  291 (389)
T PF05889_consen  215 DAFVQSTDKNFMVPV-GGAIMASFDPSGILAVSKEYPGRAS--ASPSLDLFITLLSLGCTGYGALLKERKASFPYLKERL  291 (389)
T ss_dssp             SEEEEEHHHHHCEES-SHEEEEESSHHHHHHHHHTSHSHBT--SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ceeeeecCCCEEecC-CCcEEEecCHHHHHHHHHHhhhhhh--cccchHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHH
Confidence            2 2336667765221 1112333 34555555532111111  22222333333332221  256777788899999999


Q ss_pred             HHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCCe---E-eccCC-----------CCEEEEecCCC
Q 017259          266 FKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGI---L-AKPTH-----------DTIVRLTPPLS  328 (374)
Q Consensus       266 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gi---~-v~~~~-----------~~~lRi~~~~~  328 (374)
                      +++..+....+...+.....+.+.++....  ......|...|..+||   - +.+..           -.+|-++..+.
T Consensus       292 ~~~aee~~e~ll~~p~N~is~a~tl~~l~~~~~k~~~~lgs~Lf~R~VsG~RvV~~~~~~~tsh~~~yp~~Ylt~AsaiG  371 (389)
T PF05889_consen  292 KKWAEEVGERLLETPRNHISMAFTLDTLYEISQKDGTFLGSMLFKRGVSGIRVVTPGGKKQTSHSSNYPCPYLTAASAIG  371 (389)
T ss_dssp             HHHHHHTTEEBSSSTT-SSEEEEE-TTCCTCCSSHHHHHHHHHHHTTEESSEEEETSSCEEETTSS--SSSEEEEEE-TT
T ss_pred             HHHHHHhhhhhcCCCCCCeeEEEECccchhhccchhhhHHHHHHhCCcccceeeccCCCcccccCCCCchHHHHHHHHhC
Confidence            999877644455555566667777653321  1246789999999865   2 33321           26788877788


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 017259          329 ISSNELQEGSKALHDVLE  346 (374)
Q Consensus       329 ~~~e~i~~~~~~l~~~~~  346 (374)
                      .++||++.++++|+++++
T Consensus       372 ~~~eevd~~v~rL~k~i~  389 (389)
T PF05889_consen  372 MTREEVDYFVKRLDKIIK  389 (389)
T ss_dssp             --HHHHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHhC
Confidence            999999999999999875

Autoantibodies are a hallmark of autoimmune hepatitis, but most are not disease specific. Autoantibodies to soluble liver antigen (SLA) and to liver and pancreas antigen (LP) have been described as disease specific, occurring in about 30% of all patients with autoimmune hepatitis []. The function of SLA/LP is unknown, however, it has been suggested that the protein may function as a serine hydroxymethyltransferase and may be an important enzyme in the thus far poorly understood selenocysteine pathway []. The archaeal sequences Q8TXK0 from SWISSPROT and Q8TYR3 from SWISSPROT are annotated as being pyridoxal phosphate-dependent enzymes.; GO: 0016740 transferase activity; PDB: 2E7J_B 2E7I_B 2Z67_C 3HL2_D 3BC8_A 3BCA_A 3BCB_A.

>PF04864 Alliinase_C: Allinase; InterPro: IPR006948 Allicin is a thiosulphinate that gives rise to dithiines, allyl sulphides and ajoenes, the three groups of active compounds in Allium species

Probab=98.83  E-value=5.1e-08  Score=86.39  Aligned_cols=281  Identities=12%  Similarity=0.079  Sum_probs=149.5

Q ss_pred             CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      -.-.+|++.+.++.        .-..+++.+|+++.+++|+-++.... ...+   ..-+|+...|.|..+.....-+..
T Consensus        43 f~s~eL~~~Ir~LH~~VGNAvt~gr~IV~GtGsTQL~~AalyALSp~~-~~~~---~p~~VVa~aPYY~~Y~~qt~~f~s  118 (363)
T PF04864_consen   43 FISPELERQIRRLHRVVGNAVTDGRYIVFGTGSTQLFNAALYALSPNA-SPSS---SPASVVAAAPYYSSYPEQTDFFDS  118 (363)
T ss_dssp             TS-HHHHHHHHHHHHHH-SB--TTSEEEEECHHHHHHHHHHHHHCHHT--TTS---SSEEEEE-SS--CHHHHHCCCT-B
T ss_pred             eccHHHHHHHHHHHHHhccccccCcEEEEcCCHHHHHHHHHHhcCCCC-CCCC---CCceeEecCCCccchHHHHHhccc
Confidence            34556777777754        23479999999999999998884321 1122   237899999988544322211110


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHh-cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKE-SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~-~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                       ..+         .+..    |.....   +. .+....=+ +.+++||.|.+.      +   .+++.-+..+|.|-+|
T Consensus       119 -~~y---------~w~G----da~~~~---~~~~~~~~IEl-VTSPNNPDG~lr------~---~V~~g~~~k~I~D~AY  171 (363)
T PF04864_consen  119 -RLY---------KWAG----DASNFK---NSDNPSPYIEL-VTSPNNPDGQLR------E---AVLNGSSGKVIHDLAY  171 (363)
T ss_dssp             -TTE---------EEEE----ECCCGT---T-S-CCGEEEE-EESS-TTT---------------SSTTTEEEEEEE-TT
T ss_pred             -cCc---------cccc----cHHhhc---cCCCCCCeEEE-EeCCCCCccccc------c---hhcCCCCcceeeeeee
Confidence             000         0111    111111   11 11233333 445567777653      1   2335667778999999


Q ss_pred             cCCcccccCcccccCCCCCcEE--Eeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      -..-++  +..   ...+-|+.  |+||.-| +|. |+||.+.. +++.+++.......|.+.+-=+|.=+...|+.+-+
T Consensus       172 YWPhyT--pI~---~~aD~DiMLFT~SK~TGHAGS-R~GWAlVKD~~Va~kM~~y~~lnTiGvS~dsQLRa~kiLk~v~~  245 (363)
T PF04864_consen  172 YWPHYT--PIT---APADHDIMLFTLSKLTGHAGS-RFGWALVKDEEVAKKMTKYMELNTIGVSRDSQLRALKILKVVLD  245 (363)
T ss_dssp             -STTTS--------S-B--SEEEEEHHHHCS-GGG--EEEEEES-HHHHHHHHHHHHHHCSS--HHHHHHHHHHHHHHHH
T ss_pred             eccccc--ccC---CCCCCceEEEEEecccCcccc-ccceeeecCHHHHHHHHHHHHHhcccCcHHHHHHHHHHHHHHHh
Confidence            643111  111   11234554  8899888 798 99997765 56777776554455666666666655555555433


Q ss_pred             h--------cHHHHHHHHHHHHHHHHHHHHHhC-----CCc-------e-eeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          248 E--------KLAERSAHLGEELRQHLFKIQQQF-----PNY-------V-KEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       248 ~--------~~~~~~~~~~~~~~~~l~~~~~~~-----~~~-------~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .        ++.+--++.-+...++|+++...-     |.+       . ....+.+.|.|+.+..+    ...+..+.|
T Consensus       246 ~~~~~~~~~~~F~f~~~~M~~RW~~L~~~~~~S~rFSLq~~~~~yC~ff~~~~~psPafAWlkCe~e----ed~DC~~~l  321 (363)
T PF04864_consen  246 GYGTEKGTEDIFHFGYSTMRERWEKLRAAVSASKRFSLQKFSPQYCNFFKRVREPSPAFAWLKCERE----EDEDCYAVL  321 (363)
T ss_dssp             HCCHHTTTTSHHHHHHHHHHHHHHHHHHHHCCSSSEEE---SCEEETTTTCEEE---SEEEEEESSC----GGSSHHHHH
T ss_pred             cccCCCCccchHHHHHHHHHHHHHHHHHHHHhcCceecCcCCchhccccccccCCCCCeEEEecCCc----ccccHHHHH
Confidence            1        244444444444555555554221     100       0 12345688899887644    235677788


Q ss_pred             HHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          307 KERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       307 ~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ++.||+.+.+     +..++|++  ...++++.+.++++|..+
T Consensus       322 ~~~~I~tr~G~~fga~~ryVRlS--ml~~~d~Fd~l~~rL~~l  362 (363)
T PF04864_consen  322 REAKIITRSGVLFGADSRYVRLS--MLKRDDDFDQLLERLSKL  362 (363)
T ss_dssp             HCTTEEEEEGGGGTS-TTEEEEE--SSS-HHHHHHHHHHHHCC
T ss_pred             HhCCcccCCCCccCCCCCeEEEe--ccCCHHHHHHHHHHHHhh
Confidence            8889999875     47899999  778999999999998753

Allicin is synthesised from sulphoxide cysteine derivatives by alliinase, whose C-S lyase activity cleaves C(beta)-S(gamma) bonds. It is thought that this enzyme forms part of a primitive plant defence system [].; GO: 0016846 carbon-sulfur lyase activity; PDB: 1LK9_B 2HOX_C 2HOR_A 3BWO_D 3BWN_B.

>PF02347 GDC-P: Glycine cleavage system P-protein; InterPro: IPR020580 This family consists of glycine cleavage system P-proteins (1

Probab=98.79  E-value=6.7e-07  Score=83.32  Aligned_cols=277  Identities=16%  Similarity=0.162  Sum_probs=138.2

Q ss_pred             HHHHHHHHhcccCCCe--EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~~--~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      .-++...+++++|.+-  +=...+++.+-++++++.+..    +.   ++++|++.... |+.+.........       
T Consensus       112 lfe~Qs~i~eLTGmdvaNaSlyd~atA~aEa~~ma~r~~----~~---~~~~vlv~~~~-hP~~~~v~~t~a~-------  176 (429)
T PF02347_consen  112 LFEYQSMICELTGMDVANASLYDGATAAAEAMLMAVRAT----KR---KRNKVLVPESL-HPQTRAVLRTYAA-------  176 (429)
T ss_dssp             HHHHHHHHHHHHTSSEE-SEBSSCCHHHHHHHHHHHHHH----TT------EEEEETTS--CHHHHHHHHHCC-------
T ss_pred             HHHHHHHHHHhhCCCccCCCCCChhHHHHHHHHHHHHhc----cc---CCcEEEEcCCc-ChhhHHHHHHhhh-------
Confidence            4578889999999985  366778888888877776632    11   13678887776 4443332211111       


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGR  179 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~  179 (374)
                       +...+++.+++++-...+      +++++++++..++ ..|.+.+    +++|.+++|++|.++|+ .+-- .++-.-.
T Consensus       177 -~~g~~iv~~~~~~~~~~d------~~~~a~v~vq~Pn-~~G~~ed----~~~i~~~~h~~gal~~~-~ad~~aL~~l~~  243 (429)
T PF02347_consen  177 -PLGIEIVEVPLDEDGTTD------DDDTAAVMVQNPN-TFGVFED----IKEIADIAHAAGALVIV-GADPNALGGLKS  243 (429)
T ss_dssp             -HCCEEEEEE-BBTTCSB-------STTEEEEEEESS--TTSB--T----HHHHHHHHHHTT-EEEE-CGGCCGCCTC--
T ss_pred             -hCCeEEEEecccccCCcc------ccCeEEEEeecCC-CCceEee----HHHHHHHHHHcCCEEEE-ecCHHHHhCcCC
Confidence             111223334432111101      3689999887664 4576665    99999999999999986 3211 1110001


Q ss_pred             CcccccCCCCCcEE-Eeccccc-----CCccchhhheeCHHHHhhcCCC----------------------------CCC
Q 017259          180 MLASDWEEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPG----------------------------EHG  225 (374)
Q Consensus       180 ~~~~~~~~~~~d~~-s~sK~~~-----~G~~~~G~~~~~~~~~~~~~~~----------------------------~~~  225 (374)
                      +   .  .+..|++ -.+|.||     ||- ..|++.+++++...+-..                            +..
T Consensus       244 P---g--e~GADI~vg~~Q~fg~p~~~GGP-~~G~~a~~~~l~r~lPGRiVG~t~D~~G~~~~~ltLqtREQHIrReKAt  317 (429)
T PF02347_consen  244 P---G--EYGADIVVGEHQTFGIPMGFGGP-GAGFFAVREDLVRQLPGRIVGQTKDADGKRAFVLTLQTREQHIRREKAT  317 (429)
T ss_dssp             G---G--GGT-SEEEECCTTTT---CCC-S---EEEEE-GGGGGGS-S-EEEEEEBCCCSCCEEEE-GGGTCHHHGCCST
T ss_pred             h---h--hcCccEEeeCCCCCcccCCCCCC-CeeeEEEhhhhhhhCCCceecccccccccceeeeccccccccccccchh
Confidence            1   1  2345766 2346555     344 567778888866554211                            111


Q ss_pred             CCCCCCH-HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          226 STFGGNP-LASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       226 ~~~~~~~-~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      .+++.+. +...++..-+..+..+   ++-++...+..++.++|++. ...   ...   ...|+-+.+..... ....+
T Consensus       318 SNIctnqaL~A~~a~~Yl~~~G~~GL~~iA~~~~~~A~yl~~~L~~~-~~~---~~~---~~~f~e~v~~~~~~-~~~~~  389 (429)
T PF02347_consen  318 SNICTNQALLALAAAIYLAYLGPEGLREIAERIHLNAHYLAERLKKI-YGL---PFD---NPFFFEFVVVFSKD-KEVEE  389 (429)
T ss_dssp             T---SS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT-TBE---CSS---SSSBSSEEEEESS--HHHHH
T ss_pred             hhhhhhHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHh-cCc---ccC---CCCceeeeeecCCc-HHHHH
Confidence            2233332 3222334445555554   44566666777777777665 111   111   11222222211110 13445


Q ss_pred             HHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      +.+.+...|+.......+.+-+++....|++|+|.+++.|
T Consensus       390 l~~~~~~~gl~~~~~~~~~~li~~TE~~t~edid~lv~~f  429 (429)
T PF02347_consen  390 LLKRGIEGGLNLRYPDDGALLICVTETRTKEDIDRLVEAF  429 (429)
T ss_dssp             HHHTT----EEEGGG-SSEEEEE--TT--HHHHHHHHH--
T ss_pred             HHHHHHhcCCCccccCCCeEEEEccCCCCHHHHHHHHhcC
Confidence            6677777787766656679999999999999999999865

4.4.2 from EC) from bacterial, mammalian and plant sources. The P protein is part of the glycine decarboxylase multienzyme complex (2.1.2.10 from EC (GDC) also annotated as glycine cleavage system or glycine synthase. The P protein binds the alpha-amino group of glycine through its pyridoxal phosphate cofactor, carbon dioxide is released and the remaining methylamin moiety is then transferred to the lipoamide cofactor of the H protein. GDC consists of four proteins P, H, L and T []. The reaction catalysed by this protein is: Glycine + lipoylprotein = S-aminomethyldihydrolipoylprotein + CO2 ; GO: 0004375 glycine dehydrogenase (decarboxylating) activity, 0055114 oxidation-reduction process; PDB: 1WYV_A 1WYT_C 1WYU_A.

>KOG1383 consensus Glutamate decarboxylase/sphingosine phosphate lyase [Amino acid transport and metabolism]

Probab=98.79  E-value=4.5e-07  Score=83.09  Aligned_cols=295  Identities=16%  Similarity=0.160  Sum_probs=161.1

Q ss_pred             HHHHHhcccCCC--e-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCC
Q 017259           26 FAERLTSMFGYD--M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP  102 (374)
Q Consensus        26 l~~~l~~~~~~~--~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  102 (374)
                      +-..++.+++..  . -.-|+|+|+++..+.+..+.+....+|.  ...+++++... |.....+...   ..       
T Consensus       125 ~Vnm~~~L~~~~~~~~g~~t~G~Ses~l~~~k~~~~~r~~~k~I--~~p~iv~~~~v-~~a~eK~a~y---f~-------  191 (491)
T KOG1383|consen  125 CVNMIANLFNAPSDSCGCGTVGGSESGLAAKKSYRNRRKAQKGI--DKPNIVTPQNV-HAAFEKAARY---FE-------  191 (491)
T ss_pred             HHHHHHHHhcCCccccCccccccchHHHHHHHHHHHHHHhccCC--CCccccchHHH-HHHHHHHHhh---EE-------
Confidence            444444444222  2 2668889999888888777664333442  33455544333 2211111100   00       


Q ss_pred             CCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEeccccCCc
Q 017259          103 LLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLA  175 (374)
Q Consensus       103 ~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea~~~~~  175 (374)
                        ..+..++++      |+..+.+.++   ++|..++.+-++-++|.+-+    +++|.++.-+ +++++.+|.+-+||.
T Consensus       192 --v~l~~V~~~~~~~~~D~~k~~~~i~---eNti~lv~~~~~~p~G~~e~----ve~l~~l~~e~w~ipiHvDa~~GgFi  262 (491)
T KOG1383|consen  192 --VELREVPLDEGDYRVDPGKVVRMID---ENTIMLVGSLPNFPTGEIED----VEKLADLLLEIWDIPIHVDACLGGFI  262 (491)
T ss_pred             --EEEEeeeccccceEecHHHHHHHhc---cceEEEEEEcCCCCccchhh----HHHHHHHHHHHhCCceeecccCcccc
Confidence              112233332      6777777777   68999999999899998887    9999999999 999999999998874


Q ss_pred             cc-ccCcccccCCC-CCcEEEec----c-cccCCccchhhheeC-HHH-HhhcC--C---CC--CCCCCCC--CHHHHHH
Q 017259          176 RS-GRMLASDWEEV-RPDMVILG----K-ALGGGVIPVSAVLAD-KEV-MLCIQ--P---GE--HGSTFGG--NPLASAV  237 (374)
Q Consensus       176 ~~-g~~~~~~~~~~-~~d~~s~s----K-~~~~G~~~~G~~~~~-~~~-~~~~~--~---~~--~~~~~~~--~~~~~~a  237 (374)
                      -. +.. ....+++ .|-+.|.|    | ++.. - +++|++.+ +++ .+.+.  .   +.  ...|..+  +..-.++
T Consensus       263 ~p~~~~-~~~~fdFr~p~V~Sisa~~HKYGl~~-~-G~~~vl~r~k~~~~~q~~~~~~w~Gg~y~s~TlngSR~g~~va~  339 (491)
T KOG1383|consen  263 NPAGYL-NEEEFDFRVPGVTSISADGHKYGLAP-A-GSSWVLYRNKELLPHQLFFHTDWLGGIYASPTLNGSRPGSQVAA  339 (491)
T ss_pred             cccccc-CccccccCCCCceeEeeccceeeeee-c-CcEEEEEcccccccceEEEeccccCccccCcccccCCcccHHHH
Confidence            32 211 1112222 23333333    2 2221 1 33565544 332 22221  0   01  1112222  2223345


Q ss_pred             HHHHHHHHhhhcHHH---HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          238 AIASLDVIRDEKLAE---RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       238 a~~al~~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      .++++-.+..+++.+   ++.+....+++.+++..    ++.....+.-.++.+.-..    .+-.++.+.|.+.|..+.
T Consensus       340 ~wa~~~~lG~eGY~~~~~~ive~~~~l~egie~i~----~i~i~gkp~vs~~~~~s~~----~~i~elsd~l~~~GW~ln  411 (491)
T KOG1383|consen  340 QWAALMSLGEEGYRENTQNIVETARKLREGIENIK----GIKIVGKPLVSFILFGSND----VNIFELSDLLRKKGWILN  411 (491)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhhccc----cceecCCCcEEEEEccCCc----cchhhhhHHHHhcCcCcc
Confidence            555555555555554   44455666666666642    2222222333333322221    256789999999998886


Q ss_pred             cCC-CCEEEEecCCCCCHHH-HHHHHHHHHHHHhccCCcCCC
Q 017259          315 PTH-DTIVRLTPPLSISSNE-LQEGSKALHDVLELDLPKMRK  354 (374)
Q Consensus       315 ~~~-~~~lRi~~~~~~~~e~-i~~~~~~l~~~~~~~~~~~~~  354 (374)
                      ... +..+.|+.......++ .++++.-|+++++ ++...+.
T Consensus       412 alq~P~a~Hi~vt~~~~~~~~A~~~v~Di~~~~~-el~~~p~  452 (491)
T KOG1383|consen  412 ALQFPAAIHICVTRVHAREDVADRFVADIRKVVE-ELKSLPE  452 (491)
T ss_pred             ccCCCCceEEEEEeeeccHHHHHHHHHHHHHHHH-HHHhCCC
Confidence            542 3455555445444444 6888888999998 7755543

>KOG0629 consensus Glutamate decarboxylase and related proteins [Amino acid transport and metabolism]

Probab=98.78  E-value=7e-07  Score=80.86  Aligned_cols=303  Identities=15%  Similarity=0.120  Sum_probs=161.9

Q ss_pred             HHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHccc---cccc---CCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           25 VFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGY---VKKK---FSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        25 ~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~---~~~G---~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++-.++.+.-|.+   .-+|++||+-++..++..++...+   ...|   .|+  -.+.+.+.+ |-+...+..+.+-+.
T Consensus       145 ~vl~km~~ivGw~~~~DgIf~pggsisn~Ya~~~Aryk~~Pe~K~~Gm~~~p~--lilFtSees-HYSi~kaAa~lg~gt  221 (510)
T KOG0629|consen  145 EVLAKMREIVGWEEGGDGIFAPGGSISNMYAMNCARYKNFPEVKTKGMFALPP--LILFTSEES-HYSIKKAAAFLGLGT  221 (510)
T ss_pred             HHHHHHHHHhCCCCCCCceecCCchhHHHHHHHHHHhhcCchhhhhhhhcCCc--EEEEecccc-hhhHHHHHHHhccCC
Confidence            3445555554443   568999999999999998874321   1112   221  223333333 444433333333221


Q ss_pred             ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcE-EEEEEccccCC--CCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQI-AGFLFEPIQGE--AGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~-~~vi~~~~~~~--~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                               ..+..++.+     ++++||+.|.....+- --++++...+.  .|-.-|    |+.|+++|++|++++++
T Consensus       222 ---------d~c~~v~t~e~Gkm~~~dLe~kile~k~kg~~Pf~vnaTaGTTV~GAFDd----L~~iadiC~k~~lWmHv  288 (510)
T KOG0629|consen  222 ---------DHCIKVKTDERGKMIPDDLEKKILEAKAKGGVPFFVNATAGTTVLGAFDD----LNGIADICEKHKLWMHV  288 (510)
T ss_pred             ---------ceeEEecccccCccchHHHHHHHHHHHhcCCCCeEEEecCCceeeeccCc----HHHHHHHHHhcCEEEEe
Confidence                     224444444     6899999988643330 11444444444  366666    99999999999999999


Q ss_pred             eccccCCcccccCcccccCCCC-CcEEEec--ccccCCccchhhheeCH-HHHhhcCCCCCC----------CCCCCCHH
Q 017259          168 DEIQSGLARSGRMLASDWEEVR-PDMVILG--KALGGGVIPVSAVLADK-EVMLCIQPGEHG----------STFGGNPL  233 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~~~~-~d~~s~s--K~~~~G~~~~G~~~~~~-~~~~~~~~~~~~----------~~~~~~~~  233 (374)
                      |.+++|----.........++. .+-++.+  |-+|.++ +.+.++.+. .+...+.+....          .+|....-
T Consensus       289 DAAwGGglLmS~k~R~kl~Giera~SvtwnpHK~~gapl-qCsa~l~r~~gll~~Cn~~~A~YLFq~dK~YdvS~DTgdK  367 (510)
T KOG0629|consen  289 DAAWGGGLLMSRKHRHKLTGIERANSVTWNPHKLMGAPL-QCSAFLTREEGLLQRCNQMSAIYLFQQDKFYDVSYDTGDK  367 (510)
T ss_pred             ecccccccccChhhHhhccCccccCceeecHHHhhcCcc-hhhHHHHHHHHHHHhhcccchhhhhccCceeecccccccc
Confidence            9999851011111111222332 3444544  7888888 888877664 455555433111          12222222


Q ss_pred             HHHHHHH--HHHHH------hhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccC-CC-----
Q 017259          234 ASAVAIA--SLDVI------RDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKT-AL-----  295 (374)
Q Consensus       234 ~~~aa~~--al~~~------~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~-~~-----  295 (374)
                      +...++.  .++.+      ..+   ..+++..++.+++.+++++.....  .+... +...++..+.++.. ..     
T Consensus       368 ~iQCGRh~D~FKlWlmwkaKG~~Gfe~~v~k~~~lA~yl~~~lrer~~~~--~l~~~~pe~~nv~fw~vp~~lR~~~~~~  445 (510)
T KOG0629|consen  368 AIQCGRHVDVFKLWLMWKAKGTQGFEAQVDKCLRLAEYLYDRLREREGFE--MLFELEPEHVNVCFWYVPPSLRGWQENP  445 (510)
T ss_pred             hhhcCccccHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHhcccce--ehhcCCCceEEEeeccCchHhccCcccc
Confidence            2222211  12111      112   345666678888888888765321  22221 11122222222221 00     


Q ss_pred             ------chhHHHHHHHHHHCCeEe---ccC--CCCEEEEecC-CCCCHHHHHHHHHHHHHHHh
Q 017259          296 ------PVSAYDICLKMKERGILA---KPT--HDTIVRLTPP-LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ------~~~~~~~~~~l~~~Gi~v---~~~--~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~  346 (374)
                            ...+..+...++++|...   .|.  .++++|+..+ .+.+.+|++.+++.|.++-+
T Consensus       446 e~~~rL~kVaPkIK~~Mm~~Gt~Mi~YqPl~~~~nffr~v~sn~a~~~ad~dflldEIerlgq  508 (510)
T KOG0629|consen  446 ERDSRLVKVAPKIKERMMKKGTTMIGYQPLGDKPNFFRMVISNPALTEADLDFLLDEIERLGQ  508 (510)
T ss_pred             hhhhHHHhhCcHHHHHHHhccceeeEecccccccchhheecccchhhhhhHHHHHHHHHHhcc
Confidence                  112345777888888544   333  2688998543 35688899999998876543

>COG0403 GcvP Glycine cleavage system protein P (pyridoxal-binding), N-terminal domain [Amino acid transport and metabolism]

Probab=98.74  E-value=6.7e-06  Score=74.92  Aligned_cols=284  Identities=18%  Similarity=0.120  Sum_probs=162.8

Q ss_pred             HHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCC
Q 017259           25 VFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP  102 (374)
Q Consensus        25 ~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  102 (374)
                      ++-..+++++|.+  +.=....+|.+-|+++++.+.    .++   +++++++....+...........         .+
T Consensus       124 efQtlv~dLTGm~VANASm~DeaTAaAEAm~ma~r~----~k~---k~~~~~V~~~vhpqt~~Vl~Tra---------~~  187 (450)
T COG0403         124 EFQTLVADLTGLDVANASMLDEATAAAEAMLMAKRV----TKK---KRNKFLVPKDVHPQTLDVLRTRA---------EG  187 (450)
T ss_pred             HHHHHHHHHhCCCcccchhhhhHHHHHHHHHHHHHh----hcC---cCceEEecCCCCHHHHHHHHhhc---------cc
Confidence            4555666777765  566678888888888877763    222   23888888777543332222221         12


Q ss_pred             CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe-ccccCCcccccCc
Q 017259          103 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD-EIQSGLARSGRML  181 (374)
Q Consensus       103 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D-ea~~~~~~~g~~~  181 (374)
                      ....++..+++|+++++++ .+  ..+.++++..++..+....+    +++|.+.+|++|.++++= |..+ ++-...+ 
T Consensus       188 ~g~~i~~~~~~d~~~l~~~-~~--~~~~gv~vQyP~~~G~~~~d----~~~l~~~~h~~~al~~v~aDpla-L~LL~pP-  258 (450)
T COG0403         188 LGIEIEVVDADDLDDLESA-DD--GDVFGVLVQYPNTFGIVEED----LRALIEAAHSAGALVIVAADPLA-LGLLKPP-  258 (450)
T ss_pred             CceEEEEeccchhhhhhhc-cc--cCeEEEEEecCCCCCccchh----HHHHHHHHhhcCCEEEEEechhH-hhccCCc-
Confidence            2244666667788888877 42  47888888776543334444    999999999999877753 2211 1100111 


Q ss_pred             ccccCCCCCcEE-----Eeccccc-CCccchhhheeCHHHHhhcCCC----------------------------CCCCC
Q 017259          182 ASDWEEVRPDMV-----ILGKALG-GGVIPVSAVLADKEVMLCIQPG----------------------------EHGST  227 (374)
Q Consensus       182 ~~~~~~~~~d~~-----s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~----------------------------~~~~~  227 (374)
                          -.+..|++     .|+-.++ ||- -.|++...+++...+-..                            +..++
T Consensus       259 ----Ge~GADIvvG~~QrfGvPmgfGGP-hag~fA~~~~~~R~mPGRlVG~S~D~~G~~A~rLaLQTREQHIRReKATSN  333 (450)
T COG0403         259 ----GEFGADIVVGSAQRFGVPMGFGGP-HAGYFAVKDEFKRQMPGRLVGVSVDAAGKRAFRLALQTREQHIRREKATSN  333 (450)
T ss_pred             ----cccCCceEEecCcccCCCcCCCCc-ceeeeeEhHhHhhcCCCceeeeeecCCCCchhhhhHHHHHHHHhhhccchh
Confidence                12344554     2333333 454 567777777765544211                            11222


Q ss_pred             CCCCHHHHHH-HHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          228 FGGNPLASAV-AIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       228 ~~~~~~~~~a-a~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      .+.+...++. +...+-++..+   ++-+++.+...++.++|++....    +.... ...|--+.+.-+.  ....++.
T Consensus       334 ICTnQaLlA~~As~y~~~hGp~GLk~iA~r~~~~a~~la~~L~~~~~g----~~~~~-~~fFdt~~v~~~~--~~~~~l~  406 (450)
T COG0403         334 ICTNQALLALAASMYAVYHGPQGLKEIAERIHRLAAYLAAGLKEIGAG----VELVF-DHFFDTFTVRVPE--EVAEALL  406 (450)
T ss_pred             hhHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHhhcCCc----eEecc-ccceeeEEEecch--hHHHHHH
Confidence            2322222221 11112223333   45566667777777777755311    11111 1222223332210  1567788


Q ss_pred             HHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       304 ~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +.....|+-++....+.+-++.....++++++.+++.+....
T Consensus       407 ~~~~~~G~~L~~~~~~~~~ia~tEt~t~~~i~~l~~~~~~~~  448 (450)
T COG0403         407 AAAIAGGINLRRVDADTVLIALTETTTKEDIDALVAAFGGVN  448 (450)
T ss_pred             HHHHhcCCceeeecCCceEEEeecccCHHHHHHHHHHHhhhc
Confidence            888888999988877788889888999999999999887543

>TIGR03811 tyr_de_CO2_Ent tyrosine decarboxylase, Enterococcus type

Probab=98.71  E-value=2.2e-06  Score=84.02  Aligned_cols=234  Identities=16%  Similarity=0.115  Sum_probs=130.0

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccc----ccc-----------------------------
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYV----KKK-----------------------------   65 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~----~~G-----------------------------   65 (374)
                      ..-.++-++|++.+|++  +-.+|+|||+|+..+|.++|.....    +.+                             
T Consensus       123 ~lE~~vi~~la~l~G~~~~~G~~TsGGT~ANl~aL~~AR~~k~~p~a~~~~~~~~~~~~~~w~l~n~~~~~~~~l~~~~~  202 (608)
T TIGR03811       123 QMEEEVGKEFATLMGYKNGWGHIVADGSLANLEGLWYARNIKSLPFAMKEVKPELVAGKSDWELLNMPTKEIMDLLESAG  202 (608)
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEeCChHHHHHHHHHHHHHhhhccchhhhccccccccccchhhcccccccccccccccc
Confidence            33445667777777765  4578999999999999999864200    000                             


Q ss_pred             --------------CCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHh--
Q 017259           66 --------------FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKE--  124 (374)
Q Consensus        66 --------------~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~--  124 (374)
                                    ....+--+++.+.+-|-....+..+.+-+.         ..+..+|.+     |+++|+++|++  
T Consensus       203 ~~~~~~~~~~~~~g~~~~~~~~vl~s~~aHyS~~KAa~ilGlG~---------~~vv~VpvD~~~rmd~~~L~~~I~~~~  273 (608)
T TIGR03811       203 DQIDEIKAHSARSGKDLQKLGKWLVPQTKHYSWLKAADIIGIGL---------DQVIPVPVDSNYRMDINELEKIIRKLA  273 (608)
T ss_pred             cchhhhhhhccccccccccceEEEECCCccHHHHHHHHHcCCCc---------ccEEEeecCCCCcCCHHHHHHHHHHHH
Confidence                          000001022223333554444444433211         123444443     79999998874  


Q ss_pred             -cCCcEEEEEEccccCCCCcccCChhHHHHHHHHH---HhcCC--EEEEeccccCCcc---cc---cCccc---------
Q 017259          125 -SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC---SKYNI--LMIADEIQSGLAR---SG---RMLAS---------  183 (374)
Q Consensus       125 -~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~---~~~~i--~li~Dea~~~~~~---~g---~~~~~---------  183 (374)
                       .+..+-+|+..-....+|.+-|    +++|.++|   +++|+  ++++|.||+|+..   ..   .....         
T Consensus       274 ~~g~p~~~VVataGTT~~GaiDp----l~eI~~l~~~~~~~gl~~~lHVDAAyGG~~~~l~~~~~~~~~p~~~~~~~~~~  349 (608)
T TIGR03811       274 AEKTPILGVVGVVGSTEEGAVDG----IDKIVALRNKLMKEGIYFYLHVDAAYGGYGRAIFLDEDDNFIPYDDLQEVHAE  349 (608)
T ss_pred             hcCCCeEEEEEEcCCcCCcccCC----HHHHHHHHHHHHHcCCceeEeeeccccchhhhhhccccccccccchhhccccc
Confidence             3334555555555666788888    99999998   77998  6999999998531   01   00000         


Q ss_pred             -----------------ccCCC-CCcEEEec--ccccCCccchhhheeCH-HHHhhcCC---C----CC-------CCCC
Q 017259          184 -----------------DWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVMLCIQP---G----EH-------GSTF  228 (374)
Q Consensus       184 -----------------~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~~~~~~---~----~~-------~~~~  228 (374)
                                       ...++ ..|-+++.  |.+.-.+ +.|.++.++ ++.+.+..   .    ..       ..+.
T Consensus       350 ~~~f~~~~~~l~~~~~~~l~gle~ADSItvDpHK~g~~Py-~~G~ll~Rd~~~~~~~~~~a~Yl~~~~~~~p~~~g~~~l  428 (608)
T TIGR03811       350 YGVFTEKKEYISREVYNAYKAISEAESVTIDPHKMGYIPY-SAGGIVIQDIRMRDVISYFATYVFEKGADIPALLGAYIL  428 (608)
T ss_pred             ccccccccccccHhHHHHHhcCcCceEEEeCcccccccCC-CeEEEEEeCHHHHHHHhcCcchhccccccCcccccccce
Confidence                             00011 23445554  7666566 677766654 43333321   0    00       0111


Q ss_pred             CCC--HHHHHHHHHHHHHH--hhh---cHHHHHHHHHHHHHHHHHHH
Q 017259          229 GGN--PLASAVAIASLDVI--RDE---KLAERSAHLGEELRQHLFKI  268 (374)
Q Consensus       229 ~~~--~~~~~aa~~al~~~--~~~---~~~~~~~~~~~~~~~~l~~~  268 (374)
                      .++  ....++.+.+++.+  ..+   ++.++..+..+++.+.|+..
T Consensus       429 egSR~ga~AlklW~~lr~l~~G~~Gyg~~i~~~i~~A~~~~~~L~~~  475 (608)
T TIGR03811       429 EGSKAGATAASVWAAHKVLPLNVTGYGKLIGASIEGAHRFYDFLNNL  475 (608)
T ss_pred             ecCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            223  23356667777776  333   55666667777777777764

This model represents tyrosine decarboxylases in the family of the Enterococcus faecalis enzyme Tdc. These enzymes often are encoded next to tyrosine/tyramine antiporter, together comprising a system in which tyrosine decarboxylation can protect against exposure to acid conditions. This clade differs from the archaeal tyrosine decarboxylases associated with methanofuran biosynthesis.

>KOG2467 consensus Glycine/serine hydroxymethyltransferase [Amino acid transport and metabolism]

Probab=98.33  E-value=0.00012  Score=65.51  Aligned_cols=274  Identities=15%  Similarity=0.100  Sum_probs=148.5

Q ss_pred             EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC-----CCcccccccccCCccccccCCCCCCCceecc-CC
Q 017259           40 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF-----HGRTLAAISMSCDNEAIRGFGPLLPGHLKVD-FG  113 (374)
Q Consensus        40 ~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y-----hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~  113 (374)
                      +..-|||-|+..+-.++     ++++     ++|...+---     ||+......++..+.+   |..++..+..-. +-
T Consensus       110 VQp~SGSPANfavYtal-----l~Ph-----~RiMGLDLP~GGHLsHGy~T~~kkISa~Siy---FeSmPYkv~~~TG~I  176 (477)
T KOG2467|consen  110 VQPYSGSPANFAVYTAL-----LKPH-----ERIMGLDLPSGGHLSHGYQTPTKKISATSIY---FESMPYKVDPSTGYI  176 (477)
T ss_pred             eccCCCCchhhHHHhhh-----cCCC-----CeeeeccCCCCCccccccccCCceeeeeeee---cccCceeeCCCCCce
Confidence            55667888999888888     4555     8887655322     5544443333333322   222211111100 01


Q ss_pred             CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCcccccCCCCCcE
Q 017259          114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDWEEVRPDM  192 (374)
Q Consensus       114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~  192 (374)
                      |-|.||+.....  +++++|.-..  ......+    ..++.++|.+.|.+|++|=+|. |+.-.|.  ..+.+ -..|+
T Consensus       177 DYD~Le~~A~~f--rPk~iiaG~S--aY~R~~D----YaR~R~Iad~~gA~Lm~DMAHISgLVAA~v--ipsPF-ey~Di  245 (477)
T KOG2467|consen  177 DYDKLEKTATLF--RPKLIIAGTS--AYSRLID----YARFRKIADKVGAYLMADMAHISGLVAAGV--IPSPF-EYCDI  245 (477)
T ss_pred             ehHHHHHHHHhc--CCcEEEeccc--cchhhcc----HHHHHHHHHhcCceeehhhhhHHHHHhccc--CCCcc-cccce
Confidence            678888776655  4555555322  1223344    8999999999999999999986 5432221  11111 24577


Q ss_pred             EEec--ccccCCccchhhheeCHHHHhhcCC-----------C-----CCCCCCCCCHHHHHHHHHHHHHHhhh---cHH
Q 017259          193 VILG--KALGGGVIPVSAVLADKEVMLCIQP-----------G-----EHGSTFGGNPLASAVAIASLDVIRDE---KLA  251 (374)
Q Consensus       193 ~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~-----------~-----~~~~~~~~~~~~~~aa~~al~~~~~~---~~~  251 (374)
                      ++..  |++-|.  |.|.+..++.+...=..           .     .-+..-+++--..++...+|++....   .++
T Consensus       246 VTTTTHKsLRGP--Rg~mIFyRkGvk~~~~k~g~~i~ydlE~kINfaVFP~lQGGPHNhtIaalAvALkQa~tpefk~Yq  323 (477)
T KOG2467|consen  246 VTTTTHKSLRGP--RGAMIFYRKGVKSIKPKQGKEILYDLEDKINFAVFPGLQGGPHNHTIAALAVALKQAMTPEFKEYQ  323 (477)
T ss_pred             eeccccccccCC--cceeEEEeccCCcCCCCCCCcceechhhhhhhhccccccCCCCcchHHHHHHHHHhhCCHHHHHHH
Confidence            7544  787754  34445555432211100           0     00111122333444555566665543   567


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHHHHHHHCCeEec----c-----CCCCEE
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLKMKERGILAK----P-----THDTIV  321 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~-----~~~~~l  321 (374)
                      +++.++.+.+.+.|...+..+   +  +.+ ..+++.+++....  .+...+-+-|-.-+|.+.    |     ..++.+
T Consensus       324 ~qV~~Nakala~~l~~~Gy~l---v--tgGTDnHlvLvDLr~~G--~dGarvE~vle~~~I~~NKNtvpGD~Sal~PgGi  396 (477)
T KOG2467|consen  324 KQVLKNAKALASALISRGYKL---V--TGGTDNHLVLVDLRPKG--VDGARVEKVLELCHIALNKNTVPGDKSALSPGGI  396 (477)
T ss_pred             HHHHHHHHHHHHHHHHcCceE---e--cCCccceEEEEeccccC--CchHHHHHHHHHhhhhhcCCcCCCCccccCCCce
Confidence            788888888888887775432   2  222 3466667775432  133222222222234331    1     237889


Q ss_pred             EEecCC----CCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPL----SISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~----~~~~e~i~~~~~~l~~~~~  346 (374)
                      ||..+.    ...++|+++..+-|.++.+
T Consensus       397 RiGtPAmTsRG~~e~df~~v~~fi~~av~  425 (477)
T KOG2467|consen  397 RIGTPAMTSRGFGEEDFEKVADFIDRAVK  425 (477)
T ss_pred             eccchhhcccCccHHHHHHHHHHHHHHHH
Confidence            996543    3467888888888877765

>KOG1412 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT2/GOT1 [Amino acid transport and metabolism]

Probab=98.28  E-value=7.3e-05  Score=65.37  Aligned_cols=276  Identities=14%  Similarity=0.193  Sum_probs=144.3

Q ss_pred             EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHH
Q 017259           40 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE  119 (374)
Q Consensus        40 ~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le  119 (374)
                      +.+-||+-|+..+-..+....        .+..|.+.+|++..+.......+=.......|+.  .+-..   -|++.+-
T Consensus       103 vQslsGTGAl~~~A~Fl~~~~--------~~~~VY~SnPTW~nH~~if~~aGf~tv~~Y~yWd--~~~k~---~d~e~~L  169 (410)
T KOG1412|consen  103 VQSLSGTGALRIAADFLATFY--------NKNTVYVSNPTWENHHAIFEKAGFTTVATYPYWD--AENKC---VDLEGFL  169 (410)
T ss_pred             eeeccccchhhhhHHHHHHhc--------ccceeEecCCchhHHHHHHHHcCCceeeeeeeec--CCCce---ecHHHHH
Confidence            667788888888877775432        1267888888875443332222100000011111  11000   1677776


Q ss_pred             HHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC----cccccC-CCCCc-EE
Q 017259          120 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM----LASDWE-EVRPD-MV  193 (374)
Q Consensus       120 ~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~----~~~~~~-~~~~d-~~  193 (374)
                      ..|+..|+..-.++...-+|||| +-|+++.+.+|+++.++.++..++|-+|-||. .|..    ++..++ ..... ++
T Consensus       170 sdl~~APe~si~iLhaCAhNPTG-mDPT~EQW~qia~vik~k~lf~fFDiAYQGfA-SGD~~~DawAiR~fV~~g~e~fv  247 (410)
T KOG1412|consen  170 SDLESAPEGSIIILHACAHNPTG-MDPTREQWKQIADVIKSKNLFPFFDIAYQGFA-SGDLDADAWAIRYFVEQGFELFV  247 (410)
T ss_pred             HHHhhCCCCcEEeeeccccCCCC-CCCCHHHHHHHHHHHHhcCceeeeehhhcccc-cCCccccHHHHHHHHhcCCeEEE
Confidence            67776544444444444577777 66699999999999999999999999999884 3332    222221 11122 23


Q ss_pred             --EecccccC-Cccchhhh--ee-CHHHHhhcCCC---CCCCCCCCCHHHHHHHHHHHHHHhhh----cH-------HHH
Q 017259          194 --ILGKALGG-GVIPVSAV--LA-DKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDE----KL-------AER  253 (374)
Q Consensus       194 --s~sK~~~~-G~~~~G~~--~~-~~~~~~~~~~~---~~~~~~~~~~~~~~aa~~al~~~~~~----~~-------~~~  253 (374)
                        ||+|.+|- +- |+|-+  +. ++..+..+..-   ....+++ ++++..|-+ +-+.+...    +|       -.+
T Consensus       248 ~QSFaKNfGlYne-RvGnltvv~~n~a~i~~v~SQl~lviR~~~S-NPPAyGArI-V~kvL~tP~lre~W~~sik~MssR  324 (410)
T KOG1412|consen  248 CQSFAKNFGLYNE-RVGNLTVVVNNPAVIAGVKSQLTLVIRSNWS-NPPAYGARI-VHKVLSTPELREQWIQSIKTMSSR  324 (410)
T ss_pred             Ehhhhhhcccccc-cccceEEEecChhHHHHHHHHHHHHHhhccC-CCcchhhHH-HHHHhcCHHHHHHHHHHHHHHHHH
Confidence              88899984 66 77763  23 33433333211   0112222 333333322 22333221    22       344


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCCCCEEEEecCCCCCH
Q 017259          254 SAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISS  331 (374)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~lRi~~~~~~~~  331 (374)
                      +++.+..+++.|..+.  -|+-=.. ++..|.|..-       |.+. .-+++|.+ +.|+....+    ||+++ .++.
T Consensus       325 I~~MR~aLrd~L~aL~--TPGtWDHI~~QiGMFSyT-------GLtp-~qV~~li~~h~vyLl~~G----RInis-GLN~  389 (410)
T KOG1412|consen  325 IKKMRTALRDHLVALK--TPGTWDHITQQIGMFSYT-------GLTP-AQVDHLIENHKVYLLSDG----RINIS-GLNM  389 (410)
T ss_pred             HHHHHHHHHHHHHhcC--CCCcHHHHHhhccceeec-------CCCH-HHHHHHHHhceEEEecCC----cEeee-cccc
Confidence            4444444444444442  1111000 1222332221       1133 34566655 467776554    66544 4566


Q ss_pred             HHHHHHHHHHHHHHhccC
Q 017259          332 NELQEGSKALHDVLELDL  349 (374)
Q Consensus       332 e~i~~~~~~l~~~~~~~~  349 (374)
                      ..++....+|.++.+ .+
T Consensus       390 ~NveyVAkAIde~Vr-~~  406 (410)
T KOG1412|consen  390 KNVEYVAKAIDETVR-AI  406 (410)
T ss_pred             ccHHHHHHHHHHHHH-hh
Confidence            688889998888877 54

>COG1932 SerC Phosphoserine aminotransferase [Coenzyme metabolism / Amino acid transport and metabolism]

Probab=98.15  E-value=0.00056  Score=61.59  Aligned_cols=170  Identities=15%  Similarity=0.144  Sum_probs=109.3

Q ss_pred             CEEEEeccccCCcccccCcccccCCCCCcEEEec--ccccC-CccchhhheeCHHHHhhcCCC------------CCCCC
Q 017259          163 ILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGG-GVIPVSAVLADKEVMLCIQPG------------EHGST  227 (374)
Q Consensus       163 i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~-G~~~~G~~~~~~~~~~~~~~~------------~~~~~  227 (374)
                      .++++|-+-.-++   ....+.    +-|++.+|  |.+|+ |+   +.++.++++.+++...            ..+.+
T Consensus       171 ~~~v~D~SS~ils---r~iDvs----k~dviyagaQKnlGpaGl---tvvIvr~~~l~r~~~~~~P~if~y~~~~~~~s~  240 (365)
T COG1932         171 GLLVADASSAILS---RPIDVS----KYDVIYAGAQKNLGPAGL---TVVIVRPDLLERAESYTLPSIFDYLTHADNGSM  240 (365)
T ss_pred             ceEEEecccHHhc---CCCChh----HcceEEEehhhccCccce---EEEEEcHHHHhcccccCCchHhhchhhhccCCc
Confidence            7788887654232   122221    23677666  99984 43   5577899988888653            12334


Q ss_pred             C-CCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          228 F-GGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       228 ~-~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      | .++.++.....-+++++...    .+.++-+++.+.+.+.+.+-..-.+.+....++..+ +.|.+.+..   -...|
T Consensus       241 yNTPptfa~y~~~lv~~Wlk~~GGl~~~~~rn~~ka~~LY~~id~s~fy~~~v~~~~RS~mn-V~f~~~~~~---ld~~f  316 (365)
T COG1932         241 YNTPPTFAWYLLGLVFKWLKSQGGLEALEARNQAKAQLLYDWIDKSDFYRNLVAKANRSRMN-VTFTLVDAE---LDKGF  316 (365)
T ss_pred             cCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhCCccccccchhhcccee-EEEEcCcHH---HHHHH
Confidence            4 44666667777788888774    566777777777777776542111112233333333 334454432   45678


Q ss_pred             HHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          303 CLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.+.++|+..-.++  .+.+|+++.-+.+.++++.+++-++.+.+
T Consensus       317 v~eae~~gl~~lkGhr~vgGmRasiynA~~~e~veaL~~fm~~f~~  362 (365)
T COG1932         317 VAEAEAAGLIYLKGHRSVGGLRASIYNAVPLEDVEALTDFMDWFEE  362 (365)
T ss_pred             HHHHHHcCCceeccccCCCceeeeeecCCCHHHHHHHHHHHHHHHH
Confidence            888888887664443  45699999999999999999999987765

>PRK12566 glycine dehydrogenase; Provisional

Probab=98.15  E-value=0.00022  Score=72.64  Aligned_cols=272  Identities=14%  Similarity=0.092  Sum_probs=149.7

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ..++...+++++|.+  +.=....+|.+-|+++++.+    ..++   +++++++.+..+............        
T Consensus       126 l~e~Qtmi~~LtGm~vaNASl~D~atA~aEA~~ma~~----~~~~---k~~~~~v~~~~hP~~~~v~~t~~~--------  190 (954)
T PRK12566        126 LLNFQQMTIDLTGLDLANASLLDEATAAAEAMALAKR----VAKS---KSNRFFVDEHCHPQTLSVLRTRAE--------  190 (954)
T ss_pred             HHHHHHHHHHHhCchhhhhhhccchhHHHHHHHHHHH----Hhhc---CCCEEEECCCCCHHHHHHHHHhhh--------
Confidence            345777888888877  55667777777775555443    1121   136777776664222111111111        


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec-cccCCccccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE-IQSGLARSGR  179 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De-a~~~~~~~g~  179 (374)
                       +  .++..+    .+++++.+.   +.+.++++..+ |..|.+.+    +++|.+++|++|.++|+-- ..+ ++-...
T Consensus       191 -~--~g~~i~----~~~~~~~~~---~~~~~v~vq~P-~~~G~i~d----~~~i~~~~h~~gal~~~~~d~la-L~ll~~  254 (954)
T PRK12566        191 -G--FGFELV----VDAVDNLAA---HAVFGALLQYP-DTHGEIRD----LRPLIDQLHGQQALACVAADLLS-LLVLTP  254 (954)
T ss_pred             -c--CCcEEE----EcchhhcCC---CCEEEEEEECC-CCceEEcc----HHHHHHHHHHcCCEEEEEeCHHH-HhCCCC
Confidence             1  112221    134444443   46888877544 34577766    9999999999999876321 111 110001


Q ss_pred             CcccccCCCCCcEE-Eeccccc-----CCccchhhheeCHHHHhhcCCC----------------------------CCC
Q 017259          180 MLASDWEEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPG----------------------------EHG  225 (374)
Q Consensus       180 ~~~~~~~~~~~d~~-s~sK~~~-----~G~~~~G~~~~~~~~~~~~~~~----------------------------~~~  225 (374)
                           .-++..|++ ..++.||     ||- -.|++..++++...+-..                            +..
T Consensus       255 -----Pge~GADI~vG~~Q~fGvp~~~GGP-~ag~~a~~~~~~R~~PGRivG~s~D~~G~~a~~l~LqtREQHIRReKAt  328 (954)
T PRK12566        255 -----PGELGADVVLGSTQRFGVPMGYGGP-HAAYFACRDDYKRAMPGRIIGVSRDARGNTALRMALQTREQHIRREKAN  328 (954)
T ss_pred             -----hhhcCCcEEeeCCCcCCCCCCCCCC-CeeeeeehHHHHhhCCCCccceeecCCCCeeeehhhhHHHHHhhhcccc
Confidence                 112345665 2234333     343 467778888766555321                            111


Q ss_pred             CCCCCCHHHHHHHHHHH--HHHhhhc---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHH
Q 017259          226 STFGGNPLASAVAIASL--DVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al--~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  300 (374)
                      .+.+.+.. +.|..+++  -.+..++   +-+++..+..++.+.|++.+...   .  ..  ..|--|.+.-..   ...
T Consensus       329 SNICT~qa-L~A~~a~~Y~~~~Gp~Gl~~ia~~~~~~a~~l~~~l~~~g~~~---~--~~--~fF~~~~v~~~~---~~~  397 (954)
T PRK12566        329 SNICTAQV-LLANIAGFYAVYHGPEGLKRIAQRVHRLTAILAAGLEAKGIKR---L--NR--HFFDTLTLEVGG---AQA  397 (954)
T ss_pred             chhhHHHH-HHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhcCCcc---c--cC--CccceEEEEccC---CHH
Confidence            12222221 22222221  2223343   34556667777777777743221   1  11  222223332221   467


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      ++.+...+.||-++-.+.+.+.|++....+.+|++.+++.+.
T Consensus       398 ~~~~~a~~~~~n~r~~~~~~~~~s~de~~~~~~~~~~~~~f~  439 (954)
T PRK12566        398 AIIESAEAARINLRILGRGRLGVSLDETCDEATVARLFDIFL  439 (954)
T ss_pred             HHHHHHHHCCCeeEEeCCCeEEEEeCCCCCHHHHHHHHHHhc
Confidence            899999999999988778889999999999999999999884

>COG4100 Cystathionine beta-lyase family protein involved in aluminum resistance [Inorganic ion transport and metabolism]

Probab=98.13  E-value=5e-05  Score=66.08  Aligned_cols=181  Identities=14%  Similarity=0.170  Sum_probs=111.6

Q ss_pred             cCCCCCc-HHHHHHHHhcccCCCeEE---ecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           16 RAFYNDK-FPVFAERLTSMFGYDMVL---PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        16 ~~~~~~~-~~~l~~~l~~~~~~~~~~---~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +++.+++ ++.|++-.+..++.+..+   -.-||++|+..|+--+     ..+|     |+.+...++=.-...-.+.+.
T Consensus        59 GYGydD~GRdtLe~vyA~vf~aE~a~VRpq~isGTHAI~~aLfg~-----LRpg-----Dell~i~G~PYDTLeevIG~r  128 (416)
T COG4100          59 GYGYDDLGRDTLERVYAQVFGAEAALVRPQIISGTHAIACALFGI-----LRPG-----DELLYITGSPYDTLEEVIGLR  128 (416)
T ss_pred             CCCccccchhHHHHHHHHHhccccceeeeeeecchhHHHHHHHhc-----cCCC-----CeEEEecCCcchhHHHHhccC
Confidence            4444444 556888888888888543   2447889999998877     5677     888887765222122222222


Q ss_pred             CC--ccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccC--CCCcccCChhHHHHHHHHHHhc-
Q 017259           92 CD--NEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQG--EAGVIIPPDGYLKAVRDLCSKY-  161 (374)
Q Consensus        92 ~~--~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~--~~g~~~~~~~~l~~l~~l~~~~-  161 (374)
                      +.  ....    .....-.-++..     |.+.++..++   ++|+++.+--.-+  ..-++  +-.+++++.++.++- 
T Consensus       129 g~~~gSL~----dfgi~Y~~v~Lt~~gkiD~~~v~~~i~---~~tkli~IQRS~GY~~RpS~--~I~eI~~~i~~vk~in  199 (416)
T COG4100         129 GEGQGSLK----DFGIKYKAVPLTADGKIDIQAVKTAIS---DRTKLIGIQRSKGYAWRPSL--SIAEIEEMITFVKEIN  199 (416)
T ss_pred             CCCcccHH----HhCcceeecccccCCcccHHHHHHhcC---ccceEEEEEeccCcCCCCcc--cHHHHHHHHHHHHhcC
Confidence            21  1111    000111112221     7888988888   6888888764321  11111  445678888888774 


Q ss_pred             -CCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchh-hheeCHHHHhhcC
Q 017259          162 -NILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS-AVLADKEVMLCIQ  220 (374)
Q Consensus       162 -~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G-~~~~~~~~~~~~~  220 (374)
                       ++++.+|.+|++|...-++.     ....|++  |+-|..|||++..| |+++.+++.++..
T Consensus       200 pn~ivFVDNCYGEFvE~~EPt-----~vGaDliAGSLIKNpGGgiaktGGYiaGk~~~ve~~~  257 (416)
T COG4100         200 PNVIVFVDNCYGEFVEEKEPT-----HVGADLIAGSLIKNPGGGIAKTGGYIAGKAELVEAAA  257 (416)
T ss_pred             CCEEEEEeccchhhhhccCcc-----ccchhhhccceeeCCCCceeeccceeechHHHHHhhc
Confidence             79999999999875433331     2345655  77899999876665 5778888887764

>KOG0628 consensus Aromatic-L-amino-acid/L-histidine decarboxylase [Amino acid transport and metabolism]

Probab=98.11  E-value=0.00074  Score=62.40  Aligned_cols=228  Identities=14%  Similarity=0.095  Sum_probs=110.0

Q ss_pred             CHHHHHHHHHhc-C-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCC-CC
Q 017259          114 DITALEKIFKES-G-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RP  190 (374)
Q Consensus       114 d~~~le~~l~~~-~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~  190 (374)
                      +.+.|.++|++- . .-+-.+++ ...+.++..  .-+.+.+|..+|+++|++|.+|.+|+|-...-+.+....-|+ ..
T Consensus       218 r~~~L~~AIe~D~arGlIPf~v~-at~GTT~~c--a~D~l~elg~Vc~~~glWLHVDAAYAGsa~iCpE~r~l~rGie~a  294 (511)
T KOG0628|consen  218 RGDTLRKAIEEDIARGLIPFFVC-ATLGTTSSC--AFDELEELGPVCREEGLWLHVDAAYAGSAFICPEFRYLMRGIEYA  294 (511)
T ss_pred             CHHHHHHHHHHHHhCCCccEEEE-EeecCcccc--ccccHHHhcchhhhcCEEEEeehhhccccccCHHHHHHhhcchhh
Confidence            578888888852 1 12333444 444444432  455699999999999999999999995211111111100111 01


Q ss_pred             cEE--Eeccc-----------ccCCccchhh-heeCH-HHHhhcCCC----CCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259          191 DMV--ILGKA-----------LGGGVIPVSA-VLADK-EVMLCIQPG----EHGSTFGGNPLASAVAIASLDVIRDEKLA  251 (374)
Q Consensus       191 d~~--s~sK~-----------~~~G~~~~G~-~~~~~-~~~~~~~~~----~~~~~~~~~~~~~~aa~~al~~~~~~~~~  251 (374)
                      |-.  -.+|+           +-.|. .+.- .-.++ .+.......    .+.+.--+-.+-..=.+-.++.+.-++++
T Consensus       295 DSfn~n~hK~~~vnfDCs~lWvkd~~-~~~~~~~vdp~yL~h~~~~~~~Dyrhwqipl~rRfRSLKlWfv~R~~Gve~lq  373 (511)
T KOG0628|consen  295 DSFNFNPHKWLLVNFDCSPLWVKDGT-KLSRAFNVDPLYLKHAYQGSAPDYRHWQIPLGRRFRSLKLWFVLRSYGVENLQ  373 (511)
T ss_pred             ccccCChhheeEEeeeeecceeecCc-eeeeeeecChHhhcchhhccCCCccccccccccchhhHHHHHHHHHHhHHHHH
Confidence            100  11222           11121 1111 11111 111111111    11111011222222333445555555666


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC-eEeccC---CCCEEEEecCC
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG-ILAKPT---HDTIVRLTPPL  327 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G-i~v~~~---~~~~lRi~~~~  327 (374)
                      +++++..+ +.+..+.+...-+.+-...+.--.++.|.+.+..  ....++.+++...| |.+.+.   +.-.||++...
T Consensus       374 ~~iR~h~~-La~~fe~lv~~d~~FE~~~~~~lgLvcFRlk~~N--~~ne~Ll~~in~~g~i~l~~~~l~gk~vlRf~V~s  450 (511)
T KOG0628|consen  374 NYIREHVR-LAKEFETLVRADPRFEIVNKRILGLVCFRLKGDN--EINEALLNRLNSSGRIHLVPASLHGKFVLRFAVCS  450 (511)
T ss_pred             HHHHHHHH-HHHHHHHHhhcCCcceeecccccceeEEeecCCc--HHHHHHHHHHHhcCcEEEEEeeecceEEEEEEecC
Confidence            66655443 3344444432211122222222334455554331  14566777776664 777765   45678997654


Q ss_pred             C-CCHHHHHHHHHHHHHHHhccC
Q 017259          328 S-ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       328 ~-~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      . .+.+++++..+.|.+..+ ++
T Consensus       451 ~~t~~~di~~a~~~I~~~a~-~l  472 (511)
T KOG0628|consen  451 PLTNESDIDEAWKIIFEAAD-EL  472 (511)
T ss_pred             CCCcHHHHHHHHHHHHHHHH-HH
Confidence            4 467889999998888777 53

>KOG1411 consensus Aspartate aminotransferase/Glutamic oxaloacetic transaminase AAT1/GOT2 [Amino acid transport and metabolism]

Probab=97.64  E-value=0.0016  Score=58.05  Aligned_cols=152  Identities=16%  Similarity=0.144  Sum_probs=84.3

Q ss_pred             EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc-ccccCCCCCCCceeccCCCHHHH
Q 017259           40 LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE-AIRGFGPLLPGHLKVDFGDITAL  118 (374)
Q Consensus        40 ~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~d~~~l  118 (374)
                      +.+-|||-|+-.+-..+..+.   ++     ..|.++.|++..+ .......+.+. ++.-+.|   ....   -|.+.+
T Consensus       124 vQ~lSGTGaLriga~Fl~~f~---~~-----~~I~ip~PTWgNh-~~if~~ag~~~~~yrYyd~---~t~g---ld~~g~  188 (427)
T KOG1411|consen  124 VQTLSGTGALRVGAEFLARFY---PS-----RDIYIPDPTWGNH-KNIFKDAGLPVKFYRYYDP---KTRG---LDFKGM  188 (427)
T ss_pred             EEeccCcchhhHHHHHHHhhc---cc-----cceeecCCccccc-CccccccCcceeeeeeccc---cccc---cchHHH
Confidence            556677777777776665432   24     8899999997332 22222221111 1111111   0000   033433


Q ss_pred             HHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCc----ccccC-CCCCcE-
Q 017259          119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML----ASDWE-EVRPDM-  192 (374)
Q Consensus       119 e~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~----~~~~~-~~~~d~-  192 (374)
                      -+-+...++.--.++-..-+|++| +-|+++.+++|.++.++.+.+-++|-+|-||. .|...    +...+ ...-++ 
T Consensus       189 ledl~~~p~gs~ilLhaCaHNPTG-vDPt~eqw~ki~~~~~~k~~~pffDmAYQGfa-SG~~d~DA~avR~F~~~g~~~~  266 (427)
T KOG1411|consen  189 LEDLGEAPEGSIILLHACAHNPTG-VDPTKEQWEKISDLIKEKNLLPFFDMAYQGFA-SGDLDKDAQAVRLFVEDGHEIL  266 (427)
T ss_pred             HHHHhcCCCCcEEEeehhhcCCCC-CCccHHHHHHHHHHhhhccccchhhhhhcccc-cCCchhhHHHHHHHHHcCCceE
Confidence            333343333333333334566666 67799999999999999999999999999883 33321    11111 111122 


Q ss_pred             E--EecccccC-Cccchhhh
Q 017259          193 V--ILGKALGG-GVIPVSAV  209 (374)
Q Consensus       193 ~--s~sK~~~~-G~~~~G~~  209 (374)
                      +  |++|.||- |- |+|.+
T Consensus       267 laQSyAKNMGLYgE-RvGa~  285 (427)
T KOG1411|consen  267 LAQSYAKNMGLYGE-RVGAL  285 (427)
T ss_pred             eehhhhhhcchhhh-cccee
Confidence            2  78899994 66 88874

>KOG3843 consensus Predicted serine hydroxymethyltransferase SLA/LP (autoimmune hepatitis marker in humans) [Translation, ribosomal structure and biogenesis]

Probab=97.43  E-value=0.00039  Score=59.53  Aligned_cols=224  Identities=17%  Similarity=0.200  Sum_probs=110.9

Q ss_pred             CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc--cCcccccCCCCCc
Q 017259          114 DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG--RMLASDWEEVRPD  191 (374)
Q Consensus       114 d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g--~~~~~~~~~~~~d  191 (374)
                      |++.+++.+++.++.....+.++...   ..+-+++.+++|..+|..|+++-|+..+|+ +....  ......+.--..|
T Consensus       142 dleav~~~iee~g~dcilci~sttsc---fapr~pd~leaiaaica~~diphivnnayg-lqsee~i~~iaa~~~~grid  217 (432)
T KOG3843|consen  142 DLEAVEAIIEELGEDCILCIHSTTSC---FAPRSPDNLEAIAAICAAHDIPHIVNNAYG-LQSEECIHKIAAAAECGRID  217 (432)
T ss_pred             hHHHHHHHHHHhCCceEEEEeecccc---cCCCCCchHHHHHHHHHccCchhhhccccc-cchHHHHHHHHHHhhhccHH
Confidence            78899999998776644444443321   223367889999999999999999999985 21100  0111111101112


Q ss_pred             --EEEecccccCCccchhh-he--eCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHH
Q 017259          192 --MVILGKALGGGVIPVSA-VL--ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQH  264 (374)
Q Consensus       192 --~~s~sK~~~~G~~~~G~-~~--~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~  264 (374)
                        +-|+-|.+-   +|+|. ++  .++.+++.+.+..-+...+.+  +.-..+..+-....  .+.....++..-+++..
T Consensus       218 a~vqsldknf~---vpvggaiia~fk~n~iq~iak~ypgrasa~p--s~dllitll~~gqn~f~e~~~eqkemf~~l~~k  292 (432)
T KOG3843|consen  218 AFVQSLDKNFM---VPVGGAIIAAFKDNFIQEIAKMYPGRASASP--SLDLLITLLSLGQNAFKELFGEQKEMFLKLRNK  292 (432)
T ss_pred             HHHHHhhhcce---eecchhHhhHhHHHHHHHHHHhCCCccccCc--cHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHH
Confidence              226667765   24443 22  345555555432222211112  22222222222111  12233333444444444


Q ss_pred             HHHHHHhCCCceeeEEEEeeeEEEEeccCC-Cch-hHHHHHHHHHHCCe---EeccC----------------------C
Q 017259          265 LFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-LPV-SAYDICLKMKERGI---LAKPT----------------------H  317 (374)
Q Consensus       265 l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-~~~-~~~~~~~~l~~~Gi---~v~~~----------------------~  317 (374)
                      +..+...+...+..++....-..+.++..+ ..+ ....|-..|..+||   -+.|.                      +
T Consensus       293 i~~~ae~~~e~l~~~p~n~is~amtl~ti~~~k~kavt~~gsilfak~isgarvv~~~q~kttieg~ef~~f~sht~e~~  372 (432)
T KOG3843|consen  293 IIKFAEAIGECLLETPENEISLAMTLKTIDEAKDKAVTLFGSILFAKGISGARVVPLGQMKTTIEGCEFIGFGSHTNEQH  372 (432)
T ss_pred             HHHHHHHhhhhhhcCCCchhhhhhhhccCChHHhhHHHHHHHHHHhccccCceEeeccccceeeeceEEeccccccCcCc
Confidence            444443332334344333322333332111 000 12335555666654   22221                      1


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..++-+......++.|++.++++|.+.+.
T Consensus       373 ~~yln~a~aigm~~hdld~~~~rl~~~~a  401 (432)
T KOG3843|consen  373 CAYLNAACAIGMKDHDLDEFFNRLDRCLA  401 (432)
T ss_pred             hhHhhHHHhcCCcHhHHHHHHHHHHHHHH
Confidence            24555555567889999999999988776

>PLN02994 1-aminocyclopropane-1-carboxylate synthase

Probab=97.27  E-value=0.0009  Score=54.00  Aligned_cols=57  Identities=9%  Similarity=-0.006  Sum_probs=46.6

Q ss_pred             cCCCCCcHHHHHHHHhcccC------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC
Q 017259           16 RAFYNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG   82 (374)
Q Consensus        16 ~~~~~~~~~~l~~~l~~~~~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg   82 (374)
                      ..+..++++.+++.+.+.+|      .++|++|+|+++|++.++..+     ..+|     |.|++..|.|+|
T Consensus        91 ~~G~~~lR~AiA~~l~~~~g~~v~~~pd~Ivvt~Ga~~al~~l~~~l-----~dpG-----D~VlVp~P~Y~~  153 (153)
T PLN02994         91 YHGLANFRKAIANFMAEARGGRVKFDADMIVLSAGATAANEIIMFCI-----ADPG-----DAFLVPTPYYAA  153 (153)
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCccchhheEEcCCHHHHHHHHHHHH-----cCCC-----CEEEEeCCCCCC
Confidence            34556677778888877644      458999999999999999988     5677     999999999964

>KOG2040 consensus Glycine dehydrogenase (decarboxylating) [Amino acid transport and metabolism]

Probab=96.05  E-value=1.4  Score=43.36  Aligned_cols=269  Identities=15%  Similarity=0.217  Sum_probs=136.3

Q ss_pred             HHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCC
Q 017259           28 ERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP  105 (374)
Q Consensus        28 ~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  105 (374)
                      ..+++++|.+  ++=+..-|+.|-++.....+    ..++     +++++.+.. |.-+....-....        +.  
T Consensus       170 Tmi~dlTGL~~aNASLLDEgTAaaEAm~l~~~----~~kr-----kk~vvd~~~-hpqtlsV~~TRa~--------~~--  229 (1001)
T KOG2040|consen  170 TMITDLTGLPMANASLLDEGTAAAEAMALCNR----INKR-----KKFVVDSNC-HPQTLSVVKTRAK--------GF--  229 (1001)
T ss_pred             HhhhhccCCcccchhhhccchhHHHHHHHHHh----hccc-----ceEEecCCC-Ccchhhhhhcccc--------cc--
Confidence            3445555554  44445556666666555554    3333     666666666 4443333222111        11  


Q ss_pred             CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCccccc
Q 017259          106 GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW  185 (374)
Q Consensus       106 ~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~  185 (374)
                      ++. +...|+++.....    ..+.++++--+ ...|.+.+    ..++++.+++.+..+++-.-.-.+.-...+   . 
T Consensus       230 ~i~-v~~~~~~~~~~s~----~~v~gvlvQYP-~t~G~i~d----~~el~~~a~~~~s~vv~atDLLaLtiLrpP---g-  295 (1001)
T KOG2040|consen  230 GIK-VVVSDIKEADYSS----KDVSGVLVQYP-DTEGSVLD----FDELVELAHANGSLVVMATDLLALTILRPP---G-  295 (1001)
T ss_pred             cee-EEecCHHHhhccc----cceeEEEEEcC-CCCCcccC----HHHHHHHhhccCceEEEeehhhHHHccCCh---h-
Confidence            111 2223444433222    35777766433 44577887    999999999999887653211111000000   1 


Q ss_pred             CCCCCcEE-Eeccccc-----CCccchhhheeCHHHHhhcCCCCCCCC------------------------CCCCHHHH
Q 017259          186 EEVRPDMV-ILGKALG-----GGVIPVSAVLADKEVMLCIQPGEHGST------------------------FGGNPLAS  235 (374)
Q Consensus       186 ~~~~~d~~-s~sK~~~-----~G~~~~G~~~~~~~~~~~~~~~~~~~~------------------------~~~~~~~~  235 (374)
                       ++..|+. ..|..||     ||- --|++...+++...+-....+.+                        -..|.-.+
T Consensus       296 -efGaDIavGSsQRFGVPlGYGGP-HAaFfAv~~~l~R~mPGRiiGvtkD~~gk~a~RLALQTREQHIrRDKATSNICTA  373 (1001)
T KOG2040|consen  296 -EFGADIAVGSSQRFGVPLGYGGP-HAAFFAVSESLVRMMPGRIIGVTKDALGKEAYRLALQTREQHIRRDKATSNICTA  373 (1001)
T ss_pred             -hcCceeeeccccccCccccCCCc-hHHHHHHHHHHHhhCCCceEeeeecccccHHHHHHHHHHHHHhhhhccchhhhHH
Confidence             1234544 3334333     333 33455555554433321111100                        01121122


Q ss_pred             HHHHHHHHHH----hh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          236 AVAIASLDVI----RD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       236 ~aa~~al~~~----~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .|.++-+..+    .-    +++.+++....-.+...|+..+..+   +    ....|-.+.+...   .+..++.++..
T Consensus       374 QALLANmaAmyaiYHGp~gL~~IArrvh~~T~~l~~~l~~aghel---~----~k~fFDTLkI~~~---~s~~~~l~rA~  443 (1001)
T KOG2040|consen  374 QALLANMAAMYAIYHGPHGLKEIARRVHNLTLILAEGLKNAGHEL---Q----HKPFFDTLKIRCG---CSAEEVLDRAA  443 (1001)
T ss_pred             HHHHHHHHHHHhhhcCcHHHHHHHHHHHHHHHHHHHHHhhcchhh---c----cccccceEEEEec---CcHHHHHHHHH
Confidence            2222222211    11    2445566666666666666654332   1    1112222222222   15889999999


Q ss_pred             HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          308 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       308 ~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      +++|-.+-...+.+-+++-.+.+++|++.++..+.
T Consensus       444 ~~~iNlr~~ed~tigvslDETv~~~DvddLl~vf~  478 (1001)
T KOG2040|consen  444 KRQINLRLVEDGTIGVSLDETVTEKDVDDLLWVFN  478 (1001)
T ss_pred             hhcCceEEeecCceEEeecccccHHHHHHHHHHHc
Confidence            99888888888889999888899999999998774

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
2byj_A	439	Ornithine Aminotransferase Mutant Y85i Length = 439		3e-96
1oat_A	439	Ornithine Aminotransferase Length = 439		3e-96
2can_A	402	Human Ornithine Aminotransferase Complexed With L-C		5e-96
2byl_A	439	Structure Of Ornithine Aminotransferase Triple Muta		3e-95
3lg0_A	422	Structure Of Plasmodium Falciparum Ornithine Delta-		9e-92
3ruy_A	392	Crystal Structure Of The Ornithine-Oxo Acid Transam		4e-91
1z7d_A	433	Ornithine Aminotransferase Py00104 From Plasmodium		5e-87
2eh6_A	375	Crystal Structure Of Acetylornithine Aminotransfera		1e-46
2pb0_A	420	Structure Of Biosynthetic N-Acetylornithine Aminotr		4e-46
2e54_A	385	Crystal Structure Of Acetylornithine Aminotransfera		3e-45
2ord_A	397	Crystal Structure Of Acetylornithine Aminotransfera		8e-45
3nx3_A	395	Crystal Structure Of Acetylornithine Aminotransfera		8e-43
4adb_A	406	Structural And Functional Study Of Succinyl-ornithi		2e-42
1vef_A	395	Acetylornithine Aminotransferase From Thermus Therm		5e-41
3oks_A	451	Crystal Structure Of 4-Aminobutyrate Transaminase F		5e-41
2eo5_A	419	Crystal Structure Of 4-Aminobutyrate Aminotransfera		4e-39
3q8n_A	453	Crystal Structure Of 4-Aminobutyrate Transaminase F		1e-36
3r4t_A	467	Crystal Structure Of 4-Aminobutyrate Aminotransfera		2e-36
3du4_A	448	Crystal Structure Of 7-Keto-8-Aminopelargonic Acid		3e-36
3dod_A	448	Crystal Structure Of Plp Bound 7,8-diaminopelargoni		3e-36
1szs_A	426	The Structure Of Gamma-aminobutyrate Aminotransfera		2e-34
1sf2_A	426	Structure Of E. Coli Gamma-Aminobutyrate Aminotrans		3e-34
1szu_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		7e-34
1szk_A	426	The Structure Of Gamma-Aminobutyrate Aminotransfera		1e-33
4ffc_A	453	Crystal Structure Of A 4-Aminobutyrate Aminotransfe		2e-32
3n5m_A	452	Crystals Structure Of A Bacillus Anthracis Aminotra		1e-30
4atp_A	456	Structure Of Gaba-Transaminase A1r958 From Arthroba		2e-30
1z3z_A	431	The Crystal Structure Of A Dgd Mutant: Q52a Length		4e-29
1dgd_A	432	An Alkali Metal Ion Size-Dependent Switch In The Ac		4e-29
1m0n_A	433	Structure Of Dialkylglycine Decarboxylase Complexed		4e-29
1d7r_A	433	Crystal Structure Of The Complex Of 2,2-Dialkylglyc		4e-29
3nui_A	478	Crystal Structure Of Omega-Transferase From Vibrio		7e-28
4a6r_A	459	Crystal Structure Of The Omega Transaminase From Ch		1e-27
1qj3_A	429	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		4e-27
3tft_A	457	Crystal Structure Of 7,8-Diaminopelargonic Acid Syn		4e-27
4e3r_A	473	Plp-Bound Aminotransferase Mutant Crystal Structure		6e-27
4grx_A	465	Structure Of An Omega-Aminotransferase From Paracoc		6e-27
1s09_A	429	Crystal Structure Of The Y144f Mutant Of 7,8- Diami		9e-27
1dty_A	429	Crystal Structure Of Adenosylmethionine-8-Amino-7-O		1e-26
1mgv_A	429	Crystal Structure Of The R391a Mutant Of 7,8-Diamin		1e-26
3i4j_A	430	Crystal Structure Of Aminotransferase, Class Iii Fr		1e-26
4e3q_A	473	Pmp-Bound Form Of Aminotransferase Crystal Structur		1e-26
1s08_A	429	Crystal Structure Of The D147n Mutant Of 7,8- Diami		1e-26
1s0a_A	429	Crystal Structure Of The Y17f Mutant Of 7,8- Diamin		2e-26
3lv2_A	462	Crystal Structure Of Mycobacterium Tuberculosis 7,8		3e-26
1s07_A	429	Crystal Structure Of The R253a Mutant Of 7,8-Diamin		3e-26
3bv0_A	437	Crystal Structure Of Plp Bound 7,8-Diaminopelargoni		3e-26
1s06_A	429	Crystal Structure Of The R253k Mutant Of 7,8- Diami		5e-26
2jjf_A	449	N328a Mutant Of M. Tuberculosis Rv3290c Length = 44		2e-25
2cin_A	449	Lysine Aminotransferase From M. Tuberculosis In The		2e-25
2jje_A	449	Crystal Structure Of T330s Mutant Of Rv3290c From M		5e-25
2jjh_A	449	E243 Mutant Of M. Tuberculosis Rv3290c Length = 449		9e-25
3hmu_A	472	Crystal Structure Of A Class Iii Aminotransferase F		1e-23
3a8u_X	449	Crystal Structure Of Omega-Amino Acid:pyruvate Amin		5e-23
2epj_A	434	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		7e-23
2e7u_A	424	Crystal Structure Of Glutamate-1-Semialdehyde 2,1-A		8e-23
3gju_A	459	Crystal Structure Of A Putative Aminotransferase (M		1e-22
2gsa_A	432	Crystal Structure Of Glutamate-1-Semialdehyde Amino		1e-22
3fcr_A	459	Crystal Structure Of Putative Aminotransferase (Yp_		2e-22
2hoy_A	432	Inter-Subunit Signaling In Gsam Length = 432		2e-22
3fqa_A	427	Gabaculien Complex Of Gabaculine Resistant Gsam Ver		3e-22
3fq7_A	427	Gabaculine Complex Of Gsam Length = 427		3e-22
3fq8_A	427	M248i Mutant Of Gsam Length = 427		6e-22
3dxw_A	452	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		8e-22
2zuk_A	439	The Crystal Structure Of Alpha-Amino-Epsilon-Caprol		9e-22
2cfb_A	411	Glutamate-1-Semialdehyde 2,1-Aminomutase From Therm		1e-21
3i5t_A	476	Crystal Structure Of Aminotransferase Prk07036 From		1e-21
3bs8_A	438	Crystal Structure Of Glutamate 1-Semialdehyde Amino		4e-21
3k28_A	429	Crystal Structure Of A Glutamate-1-Semialdehyde Ami		4e-20
4e77_A	429	2.0a Crystal Structure Of A Glutamate-1-Semialdehyd		5e-19
3l44_A	434	Crystal Structure Of Bacillus Anthracis Heml-1, Glu		2e-18
1ohv_A	472	4-aminobutyrate-aminotransferase From Pig Length =		9e-16
2yku_A	465	Structural Determinants Of The Beta-Selectivity Of		2e-09
2cy8_A	453	Crystal Structure Of D-Phenylglycine Aminotransfera		2e-08
4ao9_A	454	Biochemical Properties And Crystal Structure Of A N		2e-08
4a0g_A	831	Structure Of Bifunctional Dapa Aminotransferase-Dtb		2e-07
4a0f_A	831	Structure Of Selenomethionine Substituted Bifunctio		5e-06

>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i Length = 439

Iteration: 1
 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWG
Sbjct: 98  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR 
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|1OAT|A Chain A, Ornithine Aminotransferase Length = 439

Iteration: 1
 Score =  348 bits (892), Expect = 3e-96,   Method: Compositional matrix adjust.
 Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWG
Sbjct: 98  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR 
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline Length = 402

Iteration: 1
 Score =  347 bits (891), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 175/345 (50%), Positives = 236/345 (68%), Gaps = 6/345 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWG
Sbjct: 61  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 120
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+
Sbjct: 121 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 180
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR 
Sbjct: 181 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 238
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   VAIA
Sbjct: 239 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA 298
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+
Sbjct: 299 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 354
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  +
Sbjct: 355 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 399

>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i Y55a G320f Length = 439

Iteration: 1
 Score =  345 bits (884), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 174/345 (50%), Positives = 235/345 (68%), Gaps = 6/345 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWG
Sbjct: 98  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 157
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+
Sbjct: 158 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 217
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR 
Sbjct: 218 ALQDP--NVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 275
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL   VAIA
Sbjct: 276 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA 335
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+
Sbjct: 336 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 391
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  +
Sbjct: 392 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 436

>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine Delta-Aminotransferase Length = 422

Iteration: 1
 Score =  333 bits (854), Expect = 9e-92,   Method: Compositional matrix adjust.
 Identities = 165/341 (48%), Positives = 227/341 (66%), Gaps = 5/341 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + A+  QA+KLT+ SRAF++D   V    LT++FGYD VL MNTGAE  ETA KL RKWG
Sbjct: 68  LNAMINQAKKLTICSRAFFSDSLGVCERYLTNLFGYDKVLMMNTGAEASETAYKLCRKWG 127
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  KK   + A I+ C   F GRTL  +S S D +    FGP +P  LKV + D+ ALEK
Sbjct: 128 YEVKKIPENSAKIIVCNNNFSGRTLGCVSASTDKKCKNNFGPFVPNFLKVPYDDLEALEK 187
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +  F+ EP+QGEAGVI+P D Y   V  LC KYN+L +ADE+Q+GL R+G++
Sbjct: 188 ELQDP--NVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKL 245
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           L +    V+PD+++LGKAL GG  P+SA+LA+ +VML ++PGEHGST+GGNPLA+A+ + 
Sbjct: 246 LCTHHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGEHGSTYGGNPLAAAICVE 305
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L V+ +EKL E +  LG    Q+L K Q +    V+EVRG+GL  A+EF      V+ +
Sbjct: 306 ALKVLINEKLCENADKLGAPFLQNL-KEQLKDSKVVREVRGKGLLCAIEFKNDL--VNVW 362
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
           DICLK KE G++ +  HD  VRLTPPL I+  +L E ++ +
Sbjct: 363 DICLKFKENGLITRSVHDKTVRLTPPLCITKEQLDECTEII 403

>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase Rocd From Bacillus Anthracis Length = 392

Iteration: 1
 Score =  331 bits (848), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 163/345 (47%), Positives = 232/345 (67%), Gaps = 11/345 (3%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL +QA ++TL+SRAF++D+   + E++  +   +MVLPMNTGAE VETA+K AR+W 
Sbjct: 58  INALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWA 117
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  KK   + A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG + + +GD+ AL+ 
Sbjct: 118 YDVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKA 177
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
               +    A F+ EPIQGEAG+ IPP G+LK   ++C K N+L +ADEIQ+GL R+G++
Sbjct: 178 AITPN---TAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKV 234
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A DW+ V PDM ILG ALGGGV P+S   A+++++   +PG HGSTFGGNPLA AV+IA
Sbjct: 235 FACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIA 294
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +EKL ERS  LGE+L   L +I       + EVRG+GLF  +E ++ A P    
Sbjct: 295 ALEVLEEEKLTERSLQLGEKLVGQLKEIDNPM---ITEVRGKGLFIGIELNEPARPY--- 348
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             C ++K  G+L K TH+ ++R+ PPL IS  +L+   + +  VL
Sbjct: 349 --CEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391

>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii Length = 433

Iteration: 1
 Score =  317 bits (813), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 161/341 (47%), Positives = 226/341 (66%), Gaps = 5/341 (1%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + A+  QA+ LT+ SRAF++    +    LT++ GYD VL MNTGAE  ETA KL RKWG
Sbjct: 87  LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 146
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  KK   + A IV C   F GRTL  IS S   +    FGP  P   KV + D+ ALE+
Sbjct: 147 YEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE 206
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             K+    +  F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++
Sbjct: 207 ELKDP--NVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 264
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           L      V+PD+++LGKAL GG  P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + 
Sbjct: 265 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 324
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +EKL E +  LG    ++L K + +    V++VRG+GL  A+EF K  L V+  
Sbjct: 325 ALNVLINEKLCENAEKLGGPFLENL-KRELKDSKIVRDVRGKGLLCAIEF-KNEL-VNVL 381
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
           DICLK+KE G++ +  HD  +RLTPPL I+  +L E ++ +
Sbjct: 382 DICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEII 422

>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Aquifex Aeolicus Vf5 Length = 375

Iteration: 1
 Score =  183 bits (464), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/350 (33%), Positives = 179/350 (51%), Gaps = 31/350 (8%)
Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWG 60
           +AL+EQ EKL   S  + N      A +L   F  +  V   N+G E VE A+KLARK+ 
Sbjct: 51  EALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYW 110
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             K K   ++   +S    FHGRT  ++S +   +  +GF PL+PG       DI ++ K
Sbjct: 111 RDKGK---NKWKFISFENSFHGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYK 167
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +  E   + AG + E IQGE GV    + +L  ++++C + ++L+I DE+Q+G+ R+G  
Sbjct: 168 LLDE---ETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEF 224
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     ++PD++ L K LGGGV P+ A+LA +EV     PG HGSTFGGNPLA      
Sbjct: 225 YAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV 283
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEFDKTAL 295
            +D +             E+L  H+ ++   F   +KE     V+GRGL   +E ++   
Sbjct: 284 VVDEV-------------EKLLPHVREVGNYFKEKLKELGKGKVKGRGLMLGLELER--- 327
Query: 296 PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
                D  LK  E+G+L   T   ++R  PPL I    +      L ++L
Sbjct: 328 --ECKDYVLKALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375

>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine Aminotransferase From Salmonella Typhimurium: Studies On Substrate Specificity And Inhibitor Binding Length = 420

Iteration: 1
 Score =  181 bits (460), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 115/337 (34%), Positives = 172/337 (51%), Gaps = 8/337 (2%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++AL+ Q E L  +S  F N+       +L      + VL MN+G E  ETA KLAR + 
Sbjct: 79  VEALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYA 138
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
            V+   S  +  I++    FHGR+L  +S+    +   GFGP     + V F D+ A++ 
Sbjct: 139 CVRH--SPFKTKIIAFHNAFHGRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKA 196
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +     D     + EPIQGE GV      +LK +RDLC ++  L++ DE+Q G+ R+G +
Sbjct: 197 VMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   KALGGG  PVSA+L  +E+      G HGST+GGNPLA AVA A
Sbjct: 254 FAYMHYGVTPDILTSAKALGGG-FPVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGA 312
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           + D+I   ++ +      ++  QHL  I +QF +   ++RG GL    E  K      A 
Sbjct: 313 AFDIINTPEVLQGIHTKRQQFVQHLQAIDEQF-DIFSDIRGMGLLIGAEL-KPKYKGRAR 370
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
           D      E G++       ++R  P L +   ++ EG
Sbjct: 371 DFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEG 407

>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From Thermotoga Maritima Length = 385

Iteration: 1
 Score =  179 bits (453), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 189/346 (54%), Gaps = 12/346 (3%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++A+++QAEKL   S  F+N      AE L+       V   NTG E  E A+K+ARK+G
Sbjct: 50  VEAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG 109
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             K +       I+S    FHGRTL +++ +   +  + F PL+PG    +F ++  L +
Sbjct: 110 KKKSEKKYR---ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 166
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             K S D  A FL EPIQGE+G++     +L+  R LC +Y+ L++ DE+Q G+ R+G++
Sbjct: 167 --KMSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL 223
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   K LGGGV P+ AV+ ++   + ++PG+HG+TFGGNPLA    + 
Sbjct: 224 FAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVT 281
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
            +  +  E   E     G  L + L ++++++ + V +VRG GL   ++F +    VS  
Sbjct: 282 VIKELTKEGFLEEVEEKGNYLMKKLQEMKEEY-DVVADVRGMGLMIGIQFRE---EVSNR 337
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           ++  K  E  +L  P  +  +R  PPL++   E+    + L  VL+
Sbjct: 338 EVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 383

>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec 2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At 1.40 A Resolution Length = 397

Iteration: 1
 Score =  177 bits (449), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 116/346 (33%), Positives = 187/346 (54%), Gaps = 12/346 (3%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           ++A+++QAEKL   S  F+N      AE L+       V   NTG E  E A+K+ARK+G
Sbjct: 62  VEAIKDQAEKLIHCSNLFWNRPQXELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG 121
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
             K +       I+S    FHGRTL +++ +   +  + F PL+PG    +F ++  L +
Sbjct: 122 KKKSEKKYR---ILSAHNSFHGRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRR 178
Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             K S D  A FL EPIQGE+G++     +L+  R LC +Y+ L++ DE+Q G  R+G++
Sbjct: 179 --KXSEDVCAVFL-EPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKL 235
Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   K LGGGV P+ AV+ ++   + ++PG+HG+TFGGNPLA    + 
Sbjct: 236 FAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERANV-LEPGDHGTTFGGNPLACRAGVT 293
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
            +  +  E   E     G  L + L + ++++ + V +VRG GL   ++F +    VS  
Sbjct: 294 VIKELTKEGFLEEVEEKGNYLXKKLQEXKEEY-DVVADVRGXGLXIGIQFREE---VSNR 349
Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           ++  K  E  +L  P  +  +R  PPL++   E+    + L  VL+
Sbjct: 350 EVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395

>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Argd) From Campylobacter Jejuni Length = 395

Iteration: 1
 Score =  171 bits (432), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 105/343 (30%), Positives = 176/343 (51%), Gaps = 10/343 (2%)
Query: 4   LQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 63
           ++ Q +KL  +S  +YN+     A+ L      + V   N+G E +E A K ARK+ + K
Sbjct: 61  IKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAXKTARKYAFNK 120
Query: 64  KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFK 123
               +     ++    FHGRTL A+S++ + +  + F PL+ G     + DI+++EK+  
Sbjct: 121 ---GVKGGQFIAFKHSFHGRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN 177
Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLAS 183
           E   +    + E +QGE G+      + KA+R LC + +IL+IADEIQ G  RSG+  A 
Sbjct: 178 E---KTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAY 234
Query: 184 DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD 243
           +  ++ PD+    KALG G+   + V+  K     ++ G+HGST+GGNPL  A   A  +
Sbjct: 235 EHAQILPDIXTSAKALGCGLSVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNAVFE 294
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC 303
           + ++EK+ E    L   L Q L ++  +F ++ K+ +G G    +  DK+   V    + 
Sbjct: 295 IFKEEKILENVNKLTPYLEQSLDELINEF-DFCKKRKGLGFXQGLSLDKS---VKVAKVI 350
Query: 304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
            K +E  +L     +  +R  PPL +    + E S+ L   L+
Sbjct: 351 QKCQENALLLISCGENDLRFLPPLILQKEHIDEXSEKLRKALK 393

>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine Transaminase From E. Coli Length = 406

Iteration: 1
 Score =  169 bits (429), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 167/336 (49%), Gaps = 8/336 (2%)
Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +AL EQA K   +   + N+     A++L      D V   N+GAE  E ALKLARK  +
Sbjct: 62  EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARK--F 119
Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
              ++   ++ IV+    FHGRTL  +S        + F PL        + DI +   +
Sbjct: 120 AHDRYGSHKSGIVAFKNAFHGRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASAL 179
Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                D     + EPIQGE GV+   + +L+ +R+LC+++N L+I DE+Q+G+ R+G + 
Sbjct: 180 ID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELY 236
Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A     V PD++   KALGGG  PV A+LA +E    +  G HG+T+GGNPLASAVA   
Sbjct: 237 AYMHYGVTPDLLTTAKALGGG-FPVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKV 295
Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L++I   ++        +   + L  I  ++     EVRG GL      +       A  
Sbjct: 296 LELINTPEMLNGVKQRHDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNAD-YAGQAKQ 353
Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEG 337
           I  +  + G++       +VR  P L++S  E+  G
Sbjct: 354 ISQEAAKAGVMVLIAGGNVVRFAPALNVSEEEVTTG 389

>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus Hb8 Length = 395

Iteration: 1
 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/347 (32%), Positives = 180/347 (51%), Gaps = 21/347 (6%)
Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK 58
           ++A++ QAE L    +         F   LT++   ++  V P+N+G E  E ALK AR 
Sbjct: 67  VEAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARA 126
Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 118
               +KKF       V+    F GRT+ ++S++ + +    F PL+     + + D+ AL
Sbjct: 127 -HTGRKKF-------VAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEAL 178
Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
           ++   E   + A  + EP+QGE GV      +L+A R++  +   L+I DEIQ+G+ R+G
Sbjct: 179 KRAVDE---ETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 235
Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238
           +  A +   + PD++ L KALGGGV P+   +  +EV   +  G HG+TFGGNPLA A  
Sbjct: 236 KRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAG 294
Query: 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 298
           +A++  +   +L ER+A LG    + L  I       ++EVRG GL   +E  + A P  
Sbjct: 295 VAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKEKAAPY- 350
Query: 299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
              I    KE  +LA     T++R  PPL I   +L+   +A+  VL
Sbjct: 351 ---IARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394

>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 451

Iteration: 1
 Score =  164 bits (416), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/345 (32%), Positives = 172/345 (49%), Gaps = 37/345 (10%)
Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
            RLT + G       N+G+E VE A+K+AR   +     + D A        +HGRT   
Sbjct: 114 NRLTPVRGDKRSALFNSGSEAVENAVKIARSHTHKPAVVAFDHA--------YHGRTNLT 165
Query: 88  ISMSCDNEAIR-GFGPLLP----GHLKVDFGDIT---------------ALEKIFKESG- 126
           ++++      + GFGP  P      L   F D                 A+  I K+ G 
Sbjct: 166 MALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGA 225
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
           D +A  + EPIQGE G I+P DG+L  + D C K +++ IADE+Q+G AR+G M A + E
Sbjct: 226 DNLAAVVIEPIQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHE 285
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR 246
            + PD+++    + GG +P+SAV    E+M        G T+GGNP+A A A+A+++ I 
Sbjct: 286 GIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGLGGTYGGNPIACAAALATIETIE 344
Query: 247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD----I 302
            E L  R+  + + ++  L ++Q +  + + +VRGRG   A+E  K        D    +
Sbjct: 345 SEGLVARAQQIEKIMKDRLGRLQAE-DDRIGDVRGRGAMIAMELVKAGTTEPDADLTKAL 403
Query: 303 CLKMKERG--ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
           C      G  +L+  T+  +VR  PPLSI  + L EG   L +VL
Sbjct: 404 CAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVL 448

>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From Sulfolobus Tokodaii Strain7 Length = 419

Iteration: 1
 Score =  158 bits (400), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 113/373 (30%), Positives = 182/373 (48%), Gaps = 56/373 (15%)
Query: 6   EQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDM---VLPMNTGAEGVETALKLARKWGY 61
           EQ +KL   ++  FYN      A++L +    +    V   N+G E +E ++K+ +  G 
Sbjct: 70  EQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNTG- 128
Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF-GPLLPGHLKVDFGD------ 114
             +K+      I++  G FHGRT  +IS++      R   GP +PG + V + +      
Sbjct: 129 --RKY------IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPW 180
Query: 115 -ITALEK---------------IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
            I   E                IF      +++AG  FEPIQGE G +IPP  +   ++ 
Sbjct: 181 HINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFFAELQK 240
Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 216
           L  KY IL++ DE+Q GL R+G++ A +     PD++ L KALGGG++P+ A +  K+  
Sbjct: 241 LAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKD-- 298
Query: 217 LCIQPGEHGSTFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPN 274
           L  +PG H +TFGGN LA A+    +D+++D    + E      EEL+            
Sbjct: 299 LDFKPGMHSNTFGGNALACAIGSKVIDIVKDLLPHVNEIGKIFAEELQ-----------G 347
Query: 275 YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNEL 334
              +VRG GL   +E+++  +         K   RG+L  P   + +R+ PPL IS  E 
Sbjct: 348 LADDVRGIGLAWGLEYNEKKVRDRIIGESFK---RGLLLLPAGRSAIRVIPPLVISEEEA 404
Query: 335 QEGSKALHDVLEL 347
           ++G   L  V+++
Sbjct: 405 KQGLDILKKVIKV 417

>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From Mycobacterium Smegmatis Length = 453

Iteration: 1
 Score =  150 bits (378), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 111/339 (32%), Positives = 169/339 (49%), Gaps = 39/339 (11%)
Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
           E+ T++F        N+GAE VE A+K+AR +   +     D A        +HGRT   
Sbjct: 129 EKRTALF--------NSGAEAVENAVKIARAYTRRQAVVVFDHA--------YHGRTNLT 172
Query: 88  ISMSCDNEAIR-GFGPL------LPGHLKVDFGDI-------TALEKIFKESG-DQIAGF 132
           ++M+  N+  + GFGP       +P       G+         AL+ I K+ G D +A  
Sbjct: 173 MAMTAKNQPYKHGFGPFANEVYRVPTSYPFRDGETDGAAAAAHALDLINKQVGADNVAAV 232
Query: 133 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM 192
           + EP+ GE G ++P  G+L A++  C+    + +ADE+Q+G AR+G + A + E V PD+
Sbjct: 233 VIEPVHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHENVVPDL 292
Query: 193 VILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAE 252
           ++  K + GG +P+SAV    E+M   Q G  G T+GGNPLA A A+A +D I  E L  
Sbjct: 293 IVTAKGIAGG-LPLSAVTGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDTIERENLVA 351
Query: 253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG-- 310
           R+  +GE +   L  +    P  + EVRGRG   AVE  K        D+  ++      
Sbjct: 352 RARAIGETMLSRLGALAAADPR-IGEVRGRGAMIAVELVKPGTTEPDADLTKRVAAAAHA 410
Query: 311 ----ILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
               +L   T+  ++R  PPLS+  + L EG   L  V 
Sbjct: 411 QGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILAAVF 449

>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt From Mycobacterium Marinum Covalently Bound To Pyridoxal Phosphate Length = 467

Iteration: 1
 Score =  149 bits (376), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 114/376 (30%), Positives = 181/376 (48%), Gaps = 41/376 (10%)
Query: 1   MKALQEQAEKLTLSSRAFY-NDKFPVFAE---RLTSMFGYDMVLPMNTGAEGVETALKLA 56
           + A+++Q E+ T +       +++   AE   R+T   G    +  N+GAE VE ++K+A
Sbjct: 100 VDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRITPGSGEKRTVLFNSGAEAVENSIKVA 159
Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFG-- 113
           R     +   + D A        +HGRT   ++++  +   + GFGP  P   +      
Sbjct: 160 RAHTRKQAVVAFDYA--------YHGRTNLTMALTAKSMPYKSGFGPFAPEIYRAPVSYP 211
Query: 114 --------DIT---------ALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                   DI          A+  I K+ G   +A  + EPI GE G I+P DG+L A++
Sbjct: 212 YRDNLLDKDIATDGELAAERAINLIDKQIGAANLAAVIIEPIAGEGGFIVPADGFLPALQ 271
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
             C   +++ IADE+Q+G AR+G M A D E V PD+++    +  G  P+SAV    E+
Sbjct: 272 RWCRDNDVVFIADEVQTGFARTGAMFACDHENVEPDLIVTAXGIADG-FPLSAVTGRAEI 330
Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
           M        G TFGGNP+A A A+A+++ I  + + ER+  +   +   L ++Q    + 
Sbjct: 331 MDAPHTSGLGGTFGGNPVACAAALATIETIERDGMVERARQIERLVMDRLLRLQAA-DDR 389
Query: 276 VKEVRGRGLFNAVEFDK--TALPVSAYDICLKMKERG----ILAKPTHDTIVRLTPPLSI 329
           + +VRGRG   A+E  K  TA P +A    L          +L       ++RL PPL+I
Sbjct: 390 LGDVRGRGAMIAMELVKSGTAEPDAALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTI 449
Query: 330 SSNELQEGSKALHDVL 345
           S   L EG   L  +L
Sbjct: 450 SDELLSEGLDILCQIL 465

>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound 7,8- Diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 47/357 (13%)
Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
           ++LT +F  D      +GAE +E ALK+A  + Y K     ++   ++    +HG T+ A
Sbjct: 102 KKLTRVFYSD------SGAEAMEIALKMA--FQYWKNIGKPEKQKFIAMKNGYHGDTIGA 153
Query: 88  ISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFKESGDQIAG 131
           +S+         +GPL+        P   + + GD        +  L ++ +E  ++IA 
Sbjct: 154 VSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQXLRELAQLLEEHHEEIAA 213
Query: 132 FLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 190
              E  +QG +G+I+ P+GYL  VR+LC+ Y++LMI DE+ +G  R+G+M A + E V+P
Sbjct: 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQP 273
Query: 191 DMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAIASLD 243
           D++  GK + GG +P++   A +++          ++   HG ++ GN L  AVA+ +L 
Sbjct: 274 DLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSA- 299
           +   E + E+ A   ++L   L +     P +V ++R  G     E     +T  P  A 
Sbjct: 334 LFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKETKEPYPAD 391
Query: 300 ----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHDVLELD 348
               Y + LKM+E G+L +P  D I  L PPL+ ++ EL E      +A+H+V  L+
Sbjct: 392 RRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHEVTSLE 447

>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid Synthase In Bacillus Subtilis Length = 448

Iteration: 1
 Score =  149 bits (375), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 106/357 (29%), Positives = 182/357 (50%), Gaps = 47/357 (13%)
Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
           ++LT +F  D      +GAE +E ALK+A  + Y K     ++   ++    +HG T+ A
Sbjct: 102 KKLTRVFYSD------SGAEAMEIALKMA--FQYWKNIGKPEKQKFIAMKNGYHGDTIGA 153
Query: 88  ISMSCDNEAIRGFGPLL--------PGHLKVDFGD--------ITALEKIFKESGDQIAG 131
           +S+         +GPL+        P   + + GD        +  L ++ +E  ++IA 
Sbjct: 154 VSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAA 213
Query: 132 FLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 190
              E  +QG +G+I+ P+GYL  VR+LC+ Y++LMI DE+ +G  R+G+M A + E V+P
Sbjct: 214 LSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQP 273
Query: 191 DMVILGKALGGGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAIASLD 243
           D++  GK + GG +P++   A +++          ++   HG ++ GN L  AVA+ +L 
Sbjct: 274 DLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGCAVALENLA 333
Query: 244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPVSA- 299
           +   E + E+ A   ++L   L +     P +V ++R  G     E     +T  P  A 
Sbjct: 334 LFESENIVEQVAEKSKKL-HFLLQDLHALP-HVGDIRQLGFMCGAELVRSKETKEPYPAD 391
Query: 300 ----YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE----GSKALHDVLELD 348
               Y + LKM+E G+L +P  D I  L PPL+ ++ EL E      +A+H+V  L+
Sbjct: 392 RRIGYKVSLKMRELGMLTRPLGDVIAFL-PPLASTAEELSEMVAIMKQAIHEVTSLE 447

>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase Mutant: I50q Length = 426

Iteration: 1
 Score =  142 bits (359), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 168/321 (52%), Gaps = 34/321 (10%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
            L + TG+E VE A+K+AR         +   +  ++  G +HGRT   ++++   N   
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98  RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
            G G L+PGH+           +   D I ++ +IFK     + IA  + EP+QGE G  
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
                +++ +R LC ++ I++IADE+QSG  R+G + A +   V PD+    K++ GG  
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
           P++ V    EVM  + PG  G T+ GNP+A   A+  L V   E L +++  LG++L+  
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
           L  I ++ P  + +VRG G   A+E       +K    ++A +I  + +++G  +L+   
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
           +  ++R+  PL+I   ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413

>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase Length = 426

Iteration: 1
 Score =  142 bits (359), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 168/321 (52%), Gaps = 34/321 (10%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
            L + TG+E VE A+K+AR         +   +  ++  G +HGRT   ++++   N   
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98  RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
            G G L+PGH+           +   D I ++ +IFK     + IA  + EP+QGE G  
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
                +++ +R LC ++ I++IADE+QSG  R+G + A +   V PD+    K++ GG  
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
           P++ V    EVM  + PG  G T+ GNP+A   A+  L V   E L +++  LG++L+  
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
           L  I ++ P  + +VRG G   A+E       +K    ++A +I  + +++G  +L+   
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
           +  ++R+  PL+I   ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413

>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: V241a Length = 426

Iteration: 1
 Score =  141 bits (355), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 95/321 (29%), Positives = 167/321 (52%), Gaps = 34/321 (10%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
            L + TG+E VE A+K+AR         +   +  ++  G +HGRT   ++++   N   
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98  RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
            G G L+PGH+           +   D I ++ +IFK     + IA  + EP+QGE G  
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
                +++ +R LC ++ I++IADE QSG  R+G + A +   V PD+    K++ GG  
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
           P++ V    EVM  + PG  G T+ GNP+A   A+  L V   E L +++  LG++L+  
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
           L  I ++ P  + +VRG G   A+E       +K    ++A +I  + +++G  +L+   
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
           +  ++R+  PL+I   ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413

>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase Mutant: E211s Length = 426

Iteration: 1
 Score =  140 bits (354), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/321 (29%), Positives = 167/321 (52%), Gaps = 34/321 (10%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAI 97
            L + TG+E VE A+K+AR         +   +  ++  G +HGRT   ++++   N   
Sbjct: 105 TLLVTTGSEAVENAVKIARA--------ATKRSGTIAFSGAYHGRTHYTLALTGKVNPYS 156
Query: 98  RGFGPLLPGHL----------KVDFGD-ITALEKIFKESG--DQIAGFLFEPIQGEAGVI 144
            G G L+PGH+           +   D I ++ +IFK     + IA  + EP+QG  G  
Sbjct: 157 AGMG-LMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGSGGFY 215
Query: 145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVI 204
                +++ +R LC ++ I++IADE+QSG  R+G + A +   V PD+    K++ GG  
Sbjct: 216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-F 274
Query: 205 PVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
           P++ V    EVM  + PG  G T+ GNP+A   A+  L V   E L +++  LG++L+  
Sbjct: 275 PLAGVTGRAEVMDAVAPGGLGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDG 334
Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF------DKTALPVSAYDICLKMKERG--ILAKPT 316
           L  I ++ P  + +VRG G   A+E       +K    ++A +I  + +++G  +L+   
Sbjct: 335 LLAIAEKHPE-IGDVRGLGAMIAIELFEDGDHNKPDAKLTA-EIVARARDKGLILLSCGP 392
Query: 317 HDTIVRLTPPLSISSNELQEG 337
           +  ++R+  PL+I   ++++G
Sbjct: 393 YYNVLRILVPLTIEDAQIRQG 413

>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase (Gabt) From Mycobacterium Abscessus Length = 453

Iteration: 1
 Score =  136 bits (343), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 106/326 (32%), Positives = 168/326 (51%), Gaps = 32/326 (9%)
Query: 42  MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-F 100
            N+GAE VE A+K+AR         +     +V+    +HGRT   ++++  +   +  F
Sbjct: 131 FNSGAEAVENAIKVAR--------LATGRPAVVAFDNAYHGRTNLTMALTAKSMPYKSQF 182
Query: 101 GPLLPGHLKV-------DFGDIT-------ALEKIFKESGDQ-IAGFLFEPIQGEAGVII 145
           GP  P   ++       D   +T       A+ +I  + G Q +A  + EPIQGE G I+
Sbjct: 183 GPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIV 242
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
           P  G+L  +    S+  ++ IADE+Q+G AR+G   AS+ E + PD+V +   + GG +P
Sbjct: 243 PAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAXGIAGG-MP 301
Query: 206 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
           +SAV    E+M  +  G  G T+GGNP+  A A+A+L V+R+  L  R+  +   +   L
Sbjct: 302 LSAVTGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRL 361
Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSAY--DICLKMKERG--ILAKPTHDT 319
             + ++  + + EVRGRG   A+E  K  T  P +A    I  +   +G  IL   T   
Sbjct: 362 SALAEEV-DIIGEVRGRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGN 420
Query: 320 IVRLTPPLSISSNELQEGSKALHDVL 345
           ++RL PPL I  + L EG  AL D++
Sbjct: 421 VIRLLPPLVIGDDLLDEGITALSDII 446

>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis Aminotransferase Length = 452

Iteration: 1
 Score =  130 bits (327), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 102/349 (29%), Positives = 167/349 (47%), Gaps = 46/349 (13%)
Query: 26  FAERLTSMFGYDMVLPM-NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 84
            AE+L    G + V+   N+G+E  ETA K+AR+  Y  +K         S    +HG T
Sbjct: 96  LAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQ--YYAQKGEPHRYKFXSRYRGYHGNT 153
Query: 85  LAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIFK----ESG 126
            A  + +   +    + P   G L V              +  D+  ++++ +    E  
Sbjct: 154 XATXAATGQAQRRYQYEPFASGFLHVTPPDCYRXPGIERENIYDVECVKEVDRVXTWELS 213
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
           + IA F+ EPI    G++  P  Y KAV + C K+  L+I+DE+  G  R+G+       
Sbjct: 214 ETIAAFIXEPIITGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNY 273
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ-PGE-----HGSTFGGNPLASAVAIA 240
           +V+PD++   K +    +P+SA    +E+    +  GE     H +TFGGNP A A+A+ 
Sbjct: 274 DVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALK 333
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DKTALPV 297
           +L++I +E L ERSA  G  L + L +   + P  V ++RG+GL   +E     +T  P+
Sbjct: 334 NLEIIENENLIERSAQXGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDKETKEPI 392
Query: 298 ------SAYDICLKMKERGIL------AKPTHDTIVRLTPPLSISSNEL 334
                 S  + C   KE+G++          ++ I+ L PPL ISS E+
Sbjct: 393 DNDKIASVVNAC---KEKGLIIGRNGXTTAGYNNILTLAPPLVISSEEI 438

>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter Aurescens In Complex With Plp Length = 456

Iteration: 1
 Score =  130 bits (326), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 104/330 (31%), Positives = 165/330 (50%), Gaps = 42/330 (12%)
Query: 42  MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GF 100
            N+GAE VE A+K+AR         +     +V+    +HGRT   ++++      +  F
Sbjct: 131 FNSGAEAVENAVKVAR--------LATGRDAVVAFDHAYHGRTNLTMALTAKAMPYKTNF 182
Query: 101 GPLLPGHLKVDFG------------------DITALEKIFKESGDQIAGFLFEPIQGEAG 142
           GP  P   ++                      IT +EK  +  GDQ+A  + EPIQGE G
Sbjct: 183 GPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEK--QIGGDQVAAIIIEPIQGEGG 240
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
            I+P +G+L A+ +   +  I+ IADE+QSG  R+G   A D E V PD++ + K + GG
Sbjct: 241 FIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGG 300
Query: 203 VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE--- 259
            +P+SA+    +++  + PG  G T+GGNP+A A A+A++D +    L  R+ H+ E   
Sbjct: 301 -LPLSAITGRADLLDAVHPGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELAL 359
Query: 260 -ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-------DKTALPVSAYDICLKMKERGI 311
            +LR+   ++     + V ++RGRG   A+E            L  +    CLK +   I
Sbjct: 360 GKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSKEPNAELTKAVAAACLK-EGVII 418
Query: 312 LAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
           L   T+  ++RL PPL IS   L +G + L
Sbjct: 419 LTCGTYGNVIRLLPPLVISDELLIDGLEVL 448

>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a Length = 431

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
            A RL ++   G D  L ++TGAE  E A+++A+    V  K+ I     V     +HG 
Sbjct: 88  LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 139
Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
           T AA S +  +   +G GP   G   +               +  +  L+  F    ++S
Sbjct: 140 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 198
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
              +A F+ EPI    G+I  PDGY+ A++  C    +L+I DE Q+G+ R+G M A   
Sbjct: 199 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 258
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
           + V PD++ L K LG G +P++A++        I+   H       +T   +PL +AV +
Sbjct: 259 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 313
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
             LDV++ + L  R+  +G+ LR+ L  + ++F + + +VRGRGL   VE  K   T  P
Sbjct: 314 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 372
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
                      C+ +     I+  P    + R+ PPL++S +E+  G   L   +E
Sbjct: 373 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428

>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active Site Structure Of Dialkylglycine Decarboxylase Length = 432

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
            A RL ++   G D  L ++TGAE  E A+++A+    V  K+ I     V     +HG 
Sbjct: 89  LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 140
Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
           T AA S +  +   +G GP   G   +               +  +  L+  F    ++S
Sbjct: 141 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 199
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
              +A F+ EPI    G+I  PDGY+ A++  C    +L+I DE Q+G+ R+G M A   
Sbjct: 200 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 259
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
           + V PD++ L K LG G +P++A++        I+   H       +T   +PL +AV +
Sbjct: 260 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 314
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
             LDV++ + L  R+  +G+ LR+ L  + ++F + + +VRGRGL   VE  K   T  P
Sbjct: 315 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 373
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
                      C+ +     I+  P    + R+ PPL++S +E+  G   L   +E
Sbjct: 374 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 429

>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With 1- Aminocyclopentanephosphonate Length = 433

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
            A RL ++   G D  L ++TGAE  E A+++A+    V  K+ I     V     +HG 
Sbjct: 90  LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 141
Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
           T AA S +  +   +G GP   G   +               +  +  L+  F    ++S
Sbjct: 142 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 200
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
              +A F+ EPI    G+I  PDGY+ A++  C    +L+I DE Q+G+ R+G M A   
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 260
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
           + V PD++ L K LG G +P++A++        I+   H       +T   +PL +AV +
Sbjct: 261 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 315
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
             LDV++ + L  R+  +G+ LR+ L  + ++F + + +VRGRGL   VE  K   T  P
Sbjct: 316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 374
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
                      C+ +     I+  P    + R+ PPL++S +E+  G   L   +E
Sbjct: 375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430

>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine Decarboxylase With 5pa Length = 433

Iteration: 1
 Score =  125 bits (314), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 103/356 (28%), Positives = 169/356 (47%), Gaps = 50/356 (14%)
Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
            A RL ++   G D  L ++TGAE  E A+++A+    V  K+ I     V     +HG 
Sbjct: 90  LATRLANITPPGLDRALLLSTGAESNEAAIRMAK---LVTGKYEI-----VGFAQSWHGM 141
Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKV--------------DFGDITALEKIF----KES 125
           T AA S +  +   +G GP   G   +               +  +  L+  F    ++S
Sbjct: 142 TGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQS 200
Query: 126 GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDW 185
              +A F+ EPI    G+I  PDGY+ A++  C    +L+I DE Q+G+ R+G M A   
Sbjct: 201 SGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQR 260
Query: 186 EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------STFGGNPLASAVAI 239
           + V PD++ L K LG G +P++A++        I+   H       +T   +PL +AV +
Sbjct: 261 DGVTPDILTLSKTLGAG-LPLAAIVTSA----AIEERAHELGYLFYTTHVSDPLPAAVGL 315
Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TALP 296
             LDV++ + L  R+  +G+ LR+ L  + ++F + + +VRGRGL   VE  K   T  P
Sbjct: 316 RVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP 374
Query: 297 VSAYDI-----CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
                      C+ +     I+  P    + R+ PPL++S +E+  G   L   +E
Sbjct: 375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 430

>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio Fluvialis Js17 Length = 478

Iteration: 1
 Score =  121 bits (303), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 107/391 (27%), Positives = 179/391 (45%), Gaps = 50/391 (12%)
Query: 1   MKALQEQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKL 55
           + A + Q E+      AF+   +D+  + +E+L  +  +D   V   N+G+E  +T +K+
Sbjct: 83  IDAAKAQYERFP-GYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKM 141
Query: 56  ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---- 111
              W     +    +  I++    +HG T  + SM+        FG  LPG + +     
Sbjct: 142 L--WFLHAAEGKPQKRKILTRWNAYHGVTAVSASMT-GKPYNSVFGLPLPGFVHLTCPHY 198
Query: 112 --FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
             +G+    E+ F             +E  D IAGF  EP+ G  GVI P  GY +A+  
Sbjct: 199 WRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILP 258
Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV- 215
           +  KY+I +I+DE+  G  R+G        +  PD +I  K L  G  P+ AV+   E+ 
Sbjct: 259 ILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELS 318
Query: 216 ------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQ 269
                 +  I+   HG T  G+P+  A+A+ ++DV+ +E LAE    L     + L  I 
Sbjct: 319 KRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIA 378
Query: 270 QQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTIV 321
           ++ PN + E RG G   A+E  K     + +D  L + ER        G++ +P   ++V
Sbjct: 379 ER-PN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVV 436
Query: 322 RLTPPLSISSNELQEGSKALHDVLELDLPKM 352
            L PP  ++  ++ E    + D LE  L K+
Sbjct: 437 -LCPPFILTEAQMDE----MFDKLEKALDKV 462

>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From Chromobacterium Violaceum In The Apo Form, Crystallised From Polyacrylic Acid Length = 459

Iteration: 1
 Score =  120 bits (301), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 99/371 (26%), Positives = 172/371 (46%), Gaps = 42/371 (11%)
Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKL 55
           +A + Q E+L   +  F+    P   E L+S+       G+D V   N+G+E V+T +++
Sbjct: 73  EAARRQMEELPFYN-TFFKTTHPAVVE-LSSLLAEVTPAGFDRVFYTNSGSESVDTMIRM 130
Query: 56  ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---- 111
            R++  V+ K   ++  ++     +HG T+   S+             +PG   ++    
Sbjct: 131 VRRYWDVQGK--PEKKTLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWW 188
Query: 112 -----------FGDITAL---EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL 157
                      FG + A    EKI +   D++A F+ EPIQG  GVI+PP  Y   +  +
Sbjct: 189 YKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATYWPEIERI 248
Query: 158 CSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVML 217
           C KY++L++ADE+  G  R+G          +PD+    K L  G +P+ AV   K V  
Sbjct: 249 CRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVFVGKRVAE 308
Query: 218 CIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAER-SAHLGEELRQHLFKIQQQFP 273
            +  G    HG T+ G+P+ +AVA A++  +RDE + +R    +G  +++   +   +F 
Sbjct: 309 GLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF- 367
Query: 274 NYVKEVRGRGLFNAVEFDKTALPVSAY-------DICLKMKER-GILAKPTHDTIVRLTP 325
            +V +VRG G+  A    K       +        +C  +  R  ++ +   D IV   P
Sbjct: 368 EHVDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGDHIVS-AP 426
Query: 326 PLSISSNELQE 336
           PL ++  E+ E
Sbjct: 427 PLVMTRAEVDE 437

>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase In Complex With 7-Keto-8-Aminopelargonic Acid Length = 429

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 160/326 (49%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LGKAL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase (Bioa) From Mycobacterium Tuberculosis, Pre-Reaction Complex With A 3,6- Dihydropyrid-2-One Heterocycle Inhibitor Length = 457

Iteration: 1
 Score =  118 bits (296), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/330 (29%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
           G D V   ++G+  VE A K+A +  Y + +    +  +++  G +HG T  A+S+ CD 
Sbjct: 134 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 190
Query: 95  E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
                       A + F P +P     D     A E    +   ++A  + EP+ QG  G
Sbjct: 191 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 248
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
           +      YL  +RD+C +Y +L+I DEI +G  R+G + A+D   V PD++ +GKAL GG
Sbjct: 249 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 308
Query: 203 VIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
            + ++A L   +V   I  G      HG TF  NPLA AV++AS++++  +    R   L
Sbjct: 309 YLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELLLGQDWRTRITEL 368
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
              L   L    +  P  V +VR  G    +E D+   PV          +RG+  +P  
Sbjct: 369 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 423
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
           + +V   PP   +  E+ + + A+ +V  L
Sbjct: 424 N-LVYAMPPYICTPAEITQITSAMVEVARL 452

>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 107/392 (27%), Positives = 177/392 (45%), Gaps = 52/392 (13%)
Query: 1   MKALQEQAEKLTLSSRAF--YNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLA 56
           + A + Q E+      AF   +D+  + +E+L  +  +D   V   N+G+E  +T +K+ 
Sbjct: 89  IDAAKAQYERFPGYHAAFGKMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKML 148
Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC--DNEAIRGFGPLLPGHLKVD--- 111
             W     +    +  I++    +HG T  + SM+    N     FG  LPG + +    
Sbjct: 149 --WFLHAAEGKPQKRKILTRWNAYHGATAVSASMTGFPYNSV---FGLPLPGFVHLTCPH 203
Query: 112 ---FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
              +G+    E+ F             +E  D IAGF  EP+ G  GVI P  GY +A+ 
Sbjct: 204 YWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKGYFQAIL 263
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
            +  KY+I +I+DE+  G  R+G        +  PD +I    L  G  P+ AV+   E+
Sbjct: 264 PILRKYDIPVISDEVVCGFGRTGNTWGCVTYDFTPDAIISSXNLTAGFFPMGAVILGPEL 323
Query: 216 -------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
                  +  I+   HG T  G+P+  A+A+ ++DV+ +E LAE    L     + L  I
Sbjct: 324 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHI 383
Query: 269 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTI 320
            ++ PN + E RG G   A+E  K     + +D  L + ER        G++  P   ++
Sbjct: 384 AER-PN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICFPLGQSV 441
Query: 321 VRLTPPLSISSNELQEGSKALHDVLELDLPKM 352
           V L PP  ++  ++ E    + D LE  L K+
Sbjct: 442 V-LCPPFILTEAQMDE----MFDKLEKALDKV 468

>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus Denitrificans Length = 465

Iteration: 1
 Score =  118 bits (295), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 99/363 (27%), Positives = 164/363 (45%), Gaps = 42/363 (11%)
Query: 20  NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC 77
           +D+  + +E+L  +  +D   V   N+G+E  +T +K+   W     +    +  I++  
Sbjct: 102 SDQTVMLSEKLVEVSPFDNGRVFYTNSGSEANDTMVKML--WFLHAAEGKPQKRKILTRW 159
Query: 78  GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD------FGDITALEKIF--------- 122
             +HG T  + SM+        FG  LPG + +       +G+    E  F         
Sbjct: 160 NAYHGVTAVSASMT-GKPYNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELE 218
Query: 123 ----KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
               +E  D IAGF  EP+ G  GVI P  GY +A+  +  KY+I MI+DE+  G  R+G
Sbjct: 219 DTITREGADTIAGFFAEPVMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTG 278
Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-------MLCIQPGEHGSTFGGN 231
                   +  PD +I    L  G  P+ AV+   ++       +  I+   HG T  G+
Sbjct: 279 NTWGCLTYDFMPDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGH 338
Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
           P+  A+A+ ++DV+ +E LAE    L       L +I  + PN + E RG G   A+E  
Sbjct: 339 PVGCAIALKAIDVVMNEGLAENVRRLAPRFEAGLKRIADR-PN-IGEYRGIGFMWALEAV 396
Query: 292 KTALPVSAYDICLKMKER--------GILAKPTHDTIVRLTPPLSISSNELQEGSKALHD 343
           K     + +D  L + ER        G++ +P   +IV L PP  ++  ++ E  + L  
Sbjct: 397 KDKPTKTPFDANLSVSERIANTCTDLGLICRPLGQSIV-LCPPFILTEAQMDEMFEKLEK 455
Query: 344 VLE 346
            L+
Sbjct: 456 ALD 458

>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  117 bits (293), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G FHG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-FHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LG AL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|1DTY|A Chain A, Crystal Structure Of Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase With Pyridoxal Phosphate Cofactor. Length = 429

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y   K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWDAKGEARDRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LGKAL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISDGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  117 bits (293), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 100/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LGKAL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+   P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIAP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From Deinococcus Radiodurans Length = 430

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 103/365 (28%), Positives = 170/365 (46%), Gaps = 38/365 (10%)
Query: 4   LQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYDMV--LPMNTGAEGVETALKLARKWG 60
           +  QA +L  +    F +D    +A RL    G        ++ G+E  E+A+KLAR+  
Sbjct: 54  MAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQ-- 111
Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL----------PGHLKV 110
           Y  ++       +++    +HG +L +++ S        + PL+          P   + 
Sbjct: 112 YHVERGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARN 171
Query: 111 DFGDITALEKIFKESG-DQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIAD 168
              D   L  + +  G + +A F+ EP+ G +   + P  GY + VRD+C +  I+ IAD
Sbjct: 172 GAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIFIAD 231
Query: 169 EIQSGLARSGRMLA-SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---- 223
           E+ SG+ R G  LA S W  V PD+ +LGK L  G  P++ +LA  +V   +  G     
Sbjct: 232 EVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMGGSGAFM 291
Query: 224 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 283
           HG T+ G+P++ A  ++ LD++  E L   +   G +L   L  +Q +FP  + +VRG G
Sbjct: 292 HGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMM-QVRGTG 350
Query: 284 LFNAVEFDKTA------LPVSAYDICLKMKERGILAKPTH--------DTIVRLTPPLSI 329
           L   V     A       P  A  I     +RG++  P          D ++ L PPLSI
Sbjct: 351 LLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLL-LGPPLSI 409
Query: 330 SSNEL 334
           ++ E+
Sbjct: 410 TAAEV 414

>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From Vibrio Fluvialis Length = 473

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 172/386 (44%), Gaps = 48/386 (12%)
Query: 1   MKALQEQAEKLTLSSRAFY---NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKL 55
           + A + Q E+      AF+   +D+    +E+L  +  +D   V   N+G+E  +T +K 
Sbjct: 89  IDAAKAQYERFP-GYHAFFGRXSDQTVXLSEKLVEVSPFDSGRVFYTNSGSEANDTXVKX 147
Query: 56  ARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLLPGHLKVD--- 111
              W     +    +  I++    +HG T  A+S S   +     FG  LPG + +    
Sbjct: 148 L--WFLHAAEGKPQKRKILTRWNAYHGVT--AVSASXTGKPYNSVFGLPLPGFVHLTCPH 203
Query: 112 ---FGDITALEKIF-------------KESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
              +G+    E+ F             +E  D IAGF  EP+ G  GVI P  GY +A+ 
Sbjct: 204 YWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVXGAGGVIPPAKGYFQAIL 263
Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
            +  KY+I +I+DE+  G  R+G        +  PD +I  K L  G  P  AV+   E+
Sbjct: 264 PILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPXGAVILGPEL 323
Query: 216 -------MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
                  +  I+   HG T  G+P+  A+A+ ++DV+ +E LAE    L     + L  I
Sbjct: 324 SKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVXNEGLAENVRRLAPRFEERLKHI 383
Query: 269 QQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER--------GILAKPTHDTI 320
            ++ PN + E RG G   A+E  K     + +D  L + ER        G++ +P   ++
Sbjct: 384 AER-PN-IGEYRGIGFXWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSV 441
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           V L PP  ++  +  E    L   L+
Sbjct: 442 V-LCPPFILTEAQXDEXFDKLEKALD 466

>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  117 bits (292), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGNTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LG AL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  116 bits (290), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  R+G++ A +  E+ PD++ LG AL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis 7,8-Diaminopelargonic Acid Synthase In Complex With Substrate Analog Sinefungin Length = 462

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
           G D V   ++G+  VE A K+A +  Y + +    +  +++  G +HG T  A+S+ CD 
Sbjct: 139 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 195
Query: 95  E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
                       A + F P +P     D     A E    +   ++A  + EP+ QG  G
Sbjct: 196 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 253
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
           +      YL  +RD+C +Y +L+I DEI +G  R+G + A+D   V PD++ +GKAL GG
Sbjct: 254 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 313
Query: 203 VIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
            + ++A L   +V   I  G  G+     TF  NPLA AV++AS++++  +    R   L
Sbjct: 314 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 373
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
              L   L    +  P  V +VR  G    +E D+   PV          +RG+  +P  
Sbjct: 374 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 428
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
           + +V   PP   +  E+ + + A+ +V  L
Sbjct: 429 N-LVYAMPPYICTPAEITQITSAMVEVARL 457

>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of 7,8-Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  115 bits (289), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 99/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G   +G++ A +  E+ PD++ LGKAL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid Synthase In Mycobacterium Tuberculosis Length = 437

Iteration: 1
 Score =  115 bits (288), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/330 (28%), Positives = 156/330 (47%), Gaps = 28/330 (8%)
Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN 94
           G D V   ++G+  VE A K+A +  Y + +    +  +++  G +HG T  A+S+ CD 
Sbjct: 114 GLDTVFFSDSGSVSVEVAAKMALQ--YWRGRGLPGKRRLMTWRGGYHGDTFLAMSI-CDP 170
Query: 95  E-----------AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAG 142
                       A + F P +P     D     A E    +   ++A  + EP+ QG  G
Sbjct: 171 HGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGG 228
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
           +      YL  +RD+C +Y +L+I DEI +G  R+G + A+D   V PD++ +GKAL GG
Sbjct: 229 MRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGG 288
Query: 203 VIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
            + ++A L   +V   I  G  G+     TF  NPLA AV++AS++++  +    R   L
Sbjct: 289 YLSLAATLCTADVAHTISAGAAGALMRGPTFMANPLACAVSVASVELLLGQDWRTRITEL 348
Query: 258 GEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH 317
              L   L    +  P  V +VR  G    +E D+   PV          +RG+  +P  
Sbjct: 349 AAGLTAGL-DTARALPA-VTDVRVCGAIGVIECDR---PVDLAVATPAALDRGVWLRPFR 403
Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLEL 347
           + +V   PP   +  E+ + + A+ +V  L
Sbjct: 404 N-LVYAMPPYICTPAEITQITSAMVEVARL 432

>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8- Diaminopelargonic Acid Synthase Length = 429

Iteration: 1
 Score =  115 bits (287), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/326 (30%), Positives = 159/326 (48%), Gaps = 27/326 (8%)
Query: 39  VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNEAI 97
           V   ++G+  VE A+K+A +  Y + K    +  +    G +HG T  A+S+   DN   
Sbjct: 106 VFLADSGSVAVEVAMKMALQ--YWQAKGEARQRFLTFRNG-YHGDTFGAMSVCDPDNSMH 162
Query: 98  RGFGPLLPGHL-----------KVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVII 145
             +   LP +L           + D  D+    ++      +IA  + EPI QG  G+ +
Sbjct: 163 SLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM 222
Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
               +LK +R +C +  IL+IADEI +G  ++G++ A +  E+ PD++ LG AL GG + 
Sbjct: 223 YHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHAEIAPDILCLGXALTGGTMT 282
Query: 206 VSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +SA L  +EV   I  GE     HG TF GNPLA A A ASL ++      ++ A +  +
Sbjct: 283 LSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQ 342
Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI 320
           LR+ L   +      V +VR  G    VE   T  PV+   +     E+G+  +P    +
Sbjct: 343 LREQLAPARDA--EMVADVRVLGAIGVVE---TTHPVNMAALQKFFVEQGVWIRP-FGKL 396
Query: 321 VRLTPPLSISSNELQEGSKALHDVLE 346
           + L PP  I   +LQ  + A++  ++
Sbjct: 397 IYLMPPYIILPQQLQRLTAAVNRAVQ 422

>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14  SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
           S+   Y+     F E    + G D  LP    +  GA  VE ALK A  W     +   I
Sbjct: 94  SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69  DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
           D A+   ++   G FHGR+   +S++     I    P      K D+  I A        
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                             F+     IA F+ EPIQGE G       +  A+R+LC +++ 
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
           L+I DE+Q+G   +G   A    +V PD+V  GK        V  V+A + V      + 
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
             P    ST+GGN      A   L+VI  E L ER+   G+ LR  L ++   FP  V +
Sbjct: 322 AVPSRLASTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
            RGRGL  A     TA      ++  ++ +R ++  P     VR  PPL++S+ E+    
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
            A+   L
Sbjct: 439 AAVRSAL 445

>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The Internal Aldimine Form Length = 449

Iteration: 1
 Score =  113 bits (282), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14  SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
           S+   Y+     F E    + G D  LP    +  GA  VE ALK A  W     +   I
Sbjct: 94  SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69  DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
           D A+   ++   G FHGR+   +S++     I    P      K D+  I A        
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                             F+     IA F+ EPIQGE G       +  A+R+LC +++ 
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
           L+I DE+Q+G   +G   A    +V PD+V  GK        V  V+A + V      + 
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
             P    ST+GGN      A   L+VI  E L ER+   G+ LR  L ++   FP  V +
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
            RGRGL  A     TA      ++  ++ +R ++  P     VR  PPL++S+ E+    
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
            A+   L
Sbjct: 439 AAVRSAL 445

>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M. Tuberculosis Length = 449

Iteration: 1
 Score =  111 bits (278), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 154/367 (41%), Gaps = 50/367 (13%)
Query: 14  SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
           S+   Y+     F E    + G D  LP    +  GA  VE ALK A  W     +   I
Sbjct: 94  SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69  DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
           D A+   ++   G FHGR+   +S++     I    P      K D+  I A        
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                             F+     IA F+ EPIQGE G       +  A+R+LC +++ 
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
           L+I DE+Q+G   +G   A    +V PD+V  GK        V  V+A + V      + 
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
             P    S++GGN      A   L+VI  E L ER+   G+ LR  L ++   FP  V +
Sbjct: 322 AVPSRLNSSWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
            RGRGL  A     TA      ++  ++ +R ++  P     VR  PPL++S+ E+    
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
            A+   L
Sbjct: 439 AAVRSAL 445

>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c Length = 449

Iteration: 1
 Score =  110 bits (276), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/367 (28%), Positives = 153/367 (41%), Gaps = 50/367 (13%)
Query: 14  SSRAFYNDKFPVFAERLTSMFGYDMVLP----MNTGAEGVETALKLARKW-GYVKKKFSI 68
           S+   Y+     F E    + G D  LP    +  GA  VE ALK A  W     +   I
Sbjct: 94  SNSDVYSVAMARFVETFARVLG-DPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGI 152
Query: 69  DEAI---IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITA-------- 117
           D A+   ++   G FHGR+   +S++     I    P      K D+  I A        
Sbjct: 153 DPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFP------KFDWPRIDAPYMRPGLD 206
Query: 118 --------------LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                             F+     IA F+ EPIQG  G       +  A+R+LC +++ 
Sbjct: 207 EPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGAGGDRHFRPEFFAAMRELCDEFDA 266
Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-----MLC 218
           L+I DE+Q+G   +G   A    +V PD+V  GK        V  V+A + V      + 
Sbjct: 267 LLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKK-----TQVCGVMAGRRVDEVADNVF 321
Query: 219 IQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
             P    ST+GGN      A   L+VI  E L ER+   G+ LR  L ++   FP  V +
Sbjct: 322 AVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLD 381
Query: 279 VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGS 338
            RGRGL  A     TA      ++  ++ +R ++  P     VR  PPL++S+ E+    
Sbjct: 382 PRGRGLMCAFSLPTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAI 438
Query: 339 KALHDVL 345
            A+   L
Sbjct: 439 AAVRSAL 445

>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From Silicibacter Pomeroyi Length = 472

Iteration: 1
 Score =  107 bits (267), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 163/356 (45%), Gaps = 41/356 (11%)
Query: 18  FYNDKFPV-------FAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSI 68
           +YN  F          A++L  +   D+  V     G+E  +T +++ R   Y + K   
Sbjct: 89  YYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRT--YWQNKGQP 146
Query: 69  DEAIIVSCCGCFHGRTLAAIS------MSCDNEAIRGFGPLLPGHLKVDFGDIT------ 116
           ++ +I+S    +HG T+A+ +      M   +  I     +   +   + GD+       
Sbjct: 147 EKTVIISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGL 206
Query: 117 ----ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171
                LE+   E G +++A F+ EP+QG  GVI+ PD Y   ++ +C KY+IL+IADE+ 
Sbjct: 207 ARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVI 266
Query: 172 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFG 229
            G  R+G    +    +RP ++ + K L  G  P+   +   EV   I   E  HG T+ 
Sbjct: 267 CGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVIGKDEFNHGYTYS 326
Query: 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289
           G+P+A+AVA+ +L ++ +E + +   ++     +  ++     P  V E +  G+  ++ 
Sbjct: 327 GHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHP-LVGEAKIVGMMASIA 385
Query: 290 FDKTALPVSAY-----DICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 336
                   + +      I    +ER     ++ +   D ++ ++PPL I+  E+ E
Sbjct: 386 LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMI-ISPPLVITPAEIDE 440

>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate Aminotransferase Length = 449

Iteration: 1
 Score =  105 bits (261), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 39/354 (11%)
Query: 26  FAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
            AE++T +     + V   ++G+E   TA+K+ R   Y + K    +  ++     +HG 
Sbjct: 98  LAEKITDLTPGNLNHVFFTDSGSECALTAVKMVR--AYWRLKGQATKTKMIGRARGYHGV 155
Query: 84  TLAAISMSCDNEAIRGFG-PL-----LPGHLKVDF---------GDITALEKIFK----E 124
            +A  S+   N   + FG P+     LP  L             G I   +++ K     
Sbjct: 156 NIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELH 215
Query: 125 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD 184
               IA    EP+ G AGV++PP+GYLK  R++C+++NIL++ DE+ +G  R+G M  +D
Sbjct: 216 DASNIAAVFVEPLAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGAD 275
Query: 185 WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI--QPG-------EHGSTFGGNPLAS 235
              V PD++ + K +  G IP+ AV+A  E+      QP         HG T+  +P+A 
Sbjct: 276 SFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVAC 335
Query: 236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF---DK 292
           A  +A+L +++ E L +  A +     + L  I+      V ++R  GL  A++    D 
Sbjct: 336 AAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGA--KNVIDIRNFGLAGAIQIAPRDG 393
Query: 293 TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
            A+ V  ++  + + + G   +   DT+ +  P  +    +L     A+ +VL 
Sbjct: 394 DAI-VRPFEAGMALWKAGFYVRFGGDTL-QFGPTFNSKPQDLDRLFDAVGEVLN 445

>pdb|2EPJ|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Aeropyrum Pernix Length = 434

Iteration: 1
 Score =  104 bits (260), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 73/222 (32%), Positives = 113/222 (50%), Gaps = 22/222 (9%)
Query: 38  MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI 97
           M+  +N+G E   TA++LAR  GY  +       +I+   GC+HG   A +  +    A 
Sbjct: 114 MIRFVNSGTEATMTAIRLAR--GYTGRD------LILKFDGCYHGSHDAVLVAAGSAAAH 165
Query: 98  RGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 149
            G  P   G         L   + D+ ALE++F E GD+IAG + EP+   AGVI P   
Sbjct: 166 YGV-PTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRRE 224
Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           +L A++ L  +   L+I DE+ +G  R G   A  +  +  D+++LGK +GGG  PV AV
Sbjct: 225 FLAALQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAV 282
Query: 210 LADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDE 248
              +EVM  + P     +  TF  +P+  A  +A+L  + +E
Sbjct: 283 AGSREVMSLLTPQGKVFNAGTFNAHPITMAAGLATLKALEEE 324

>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermus Thermophilus Hb8 Length = 424

Iteration: 1
 Score =  104 bits (259), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 73/224 (32%), Positives = 118/224 (52%), Gaps = 27/224 (12%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           D+V  +N+G E   +AL+LAR  GY  + +      IV   G +HG     +  +     
Sbjct: 109 DLVRFVNSGTEATMSALRLAR--GYTGRPY------IVKFRGNYHGHADGLLVEAGSGAL 160
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P   G         L +++ D   L ++ K  G++IA  +FEP+ G AGV++P +
Sbjct: 161 TLGV-PSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTE 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMVILGKALGGGVIPV 206
            +LKA+ +    Y +L+IADE+ +G  LA  G   A++   ++PD+V LGK LGGG +P 
Sbjct: 220 DFLKALHE-AKAYGVLLIADEVMTGFRLAFGG---ATELLGLKPDLVTLGKILGGG-LPA 274
Query: 207 SAVLADKEVMLCIQ---PGEHGSTFGGNPLASAVAIASLDVIRD 247
           +A    +E+M  +    P     T  GNPLA A  +A+L+++ +
Sbjct: 275 AAYAGRREIMEKVAPLGPVYQAGTLSGNPLAMAAGLATLELLEE 318

>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase (Aminotransferase, Wild-Type Form) Length = 432

Iteration: 1
 Score =  103 bits (258), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L+L R +    K        I+   GC+HG     +  +    A
Sbjct: 114 EMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 165
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         L   + D+ A++ +F E+  +IAG + EPI G +G I+P  
Sbjct: 166 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 224
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
           G+L+ +R++  +++ L++ DE+ +G     R+     +E   V PD+  LGK +GGG +P
Sbjct: 225 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 279
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           V A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L 
Sbjct: 280 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 339
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
             L  I Q+  +     +  G+F    F  T  PV  Y+   K            M E+G
Sbjct: 340 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 396
Query: 311 ILAKPTH 317
           I   P+ 
Sbjct: 397 IYLAPSQ 403

>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam Length = 432

Iteration: 1
 Score =  103 bits (256), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L++ R +    K        I+   GC+HG     +  +    A
Sbjct: 114 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 165
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         L   + D+ A++ +F E+  +IAG + EPI G +G I+P  
Sbjct: 166 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 224
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
           G+L+ +R++  +++ L++ DE+ +G     R+     +E   V PD+  LGK +GGG +P
Sbjct: 225 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 279
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           V A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L 
Sbjct: 280 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 339
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
             L  I Q+  +     +  G+F    F  T  PV  Y+   K            M E+G
Sbjct: 340 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 396
Query: 311 ILAKPTH 317
           I   P+ 
Sbjct: 397 IYLAPSQ 403

>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version Length = 427

Iteration: 1
 Score =  102 bits (255), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 85/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L+L R +    K        I+   GC+HG     +  +    A
Sbjct: 109 EMVRFVNSGTEACMAVLRLMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         L   + D+ A++ +F E+  +IAG + EPI G +G I+P  
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
           G+L+ +R++  +++ L++ DE+ +G     R+     +E   V PD+  LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           V A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L 
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
             L  I Q+  +     +  G+F    F  T  PV  Y+   K            M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
           I   P+ 
Sbjct: 392 IYLAPSQ 398

>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam Length = 427

Iteration: 1
 Score =  102 bits (254), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L++ R +    K        I+   GC+HG     +  +    A
Sbjct: 109 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         L   + D+ A++ +F E+  +IAG + EPI G +G I+P  
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
           G+L+ +R++  +++ L++ DE+ +G     R+     +E   V PD+  LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVMTGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           V A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L 
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
             L  I Q+  +     +  G+F    F  T  PV  Y+   K            M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
           I   P+ 
Sbjct: 392 IYLAPSQ 398

>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam Length = 427

Iteration: 1
 Score =  101 bits (252), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 84/307 (27%), Positives = 137/307 (44%), Gaps = 43/307 (14%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L++ R +    K        I+   GC+HG     +  +    A
Sbjct: 109 EMVRFVNSGTEACMAVLRIMRAYTGRDK--------IIKFEGCYHGHADMFLVKAGSGVA 160
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         L   + D+ A++ +F E+  +IAG + EPI G +G I+P  
Sbjct: 161 TLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDA 219
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEE---VRPDMVILGKALGGGVIP 205
           G+L+ +R++  +++ L++ DE+ +G     R+     +E   V PD+  LGK +GGG +P
Sbjct: 220 GFLEGLREITLEHDALLVFDEVITGF----RIAYGGVQEKFGVTPDLTTLGKIIGGG-LP 274
Query: 206 VSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           V A    +E+M  + P        T  GNPLA    I +L+++R     E    + + L 
Sbjct: 275 VGAYGGKREIMQLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLS 334
Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK------------MKERG 310
             L  I Q+  +     +  G+F    F  T  PV  Y+   K            M E+G
Sbjct: 335 DGLLAIAQETGHAACGGQVSGMFG---FFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQG 391
Query: 311 ILAKPTH 317
           I   P+ 
Sbjct: 392 IYLAPSQ 398

>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam Length = 452

Iteration: 1
 Score =  101 bits (251), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 44/340 (12%)
Query: 25  VFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81
             AERL + F   G   +   ++G++  E A +   K        +   + +++  G +H
Sbjct: 103 TLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFAGAYH 154
Query: 82  GRTLAAISMSCDN---EAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKESGDQ 128
           G T+ +++ S  +   +A +  G +L   P   +    D T         EK+       
Sbjct: 155 GCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGS 214
Query: 129 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 188
           I     EPIQ + G+I+PPDG+L+   D+C  + IL++ DE++ GLARSGR+   + E  
Sbjct: 215 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 274
Query: 189 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 248
            PD +++     GG +P+SAV+A  E++ C        T  GNP+++A  +A L+ I  +
Sbjct: 275 VPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLETIDRD 332
Query: 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DKTALP 296
            L   +   G  LR  L ++ ++ P  + ++RGRGL   +E             +   L 
Sbjct: 333 DLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLI 391
Query: 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
             AY + L +   G+     +  ++  TPPL+I+  ++ +
Sbjct: 392 YRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 426

>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam Racemase From Achromobacter Obae Complexed With Epsilon Caprolactam (Different Binding Mode) Length = 439

Iteration: 1
 Score =  100 bits (250), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 161/340 (47%), Gaps = 44/340 (12%)
Query: 25  VFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH 81
             AERL + F   G   +   ++G++  E A +   K        +   + +++  G +H
Sbjct: 90  TLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVK--------ATGRSGVIAFAGAYH 141
Query: 82  GRTLAAISMSCDN---EAIRGFGPLL---PGHLKVDFGDITA-------LEKIFKESGDQ 128
           G T+ +++ S  +   +A +  G +L   P   +    D T         EK+       
Sbjct: 142 GCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGS 201
Query: 129 IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV 188
           I     EPIQ + G+I+PPDG+L+   D+C  + IL++ DE++ GLARSGR+   + E  
Sbjct: 202 IGAAFIEPIQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 261
Query: 189 RPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE 248
            PD +++     GG +P+SAV+A  E++ C        T  GNP+++A  +A L+ I  +
Sbjct: 262 VPD-ILVLGKGLGGGLPLSAVIAPAEILDCASAFAM-QTLHGNPISAAAGLAVLETIDRD 319
Query: 249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF------------DKTALP 296
            L   +   G  LR  L ++ ++ P  + ++RGRGL   +E             +   L 
Sbjct: 320 DLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAETAKLI 378
Query: 297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQE 336
             AY + L +   G+     +  ++  TPPL+I+  ++ +
Sbjct: 379 YRAYQLGLVVYYVGM-----NGNVLEFTPPLTITETDIHK 413

>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From Thermosynechococcus Elongatus Length = 411

Iteration: 1
 Score =  100 bits (250), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/276 (28%), Positives = 127/276 (46%), Gaps = 25/276 (9%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           +MV  +N+G E     L+L R +   +K        ++   GC+HG     +  +    A
Sbjct: 93  EMVRFVNSGTEACMAVLRLMRAYTQREK--------VIKFEGCYHGHADMFLVKAGSGVA 144
Query: 97  IRGFGPLLPGHLKVD--------FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG  K          + D+ A+ ++F++  + IAG + EP+ G AG I P  
Sbjct: 145 TLGL-PDSPGVPKATTAATLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNAGFIPPDA 203
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
           G+L+ +R+L  +Y  L++ DE+ +G  R     A +   V PD+  LGK +GGG +PV A
Sbjct: 204 GFLEGLRELTKQYGALLVFDEVMTGF-RIAYGGAQEKFGVTPDLTTLGKVIGGG-LPVGA 261
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
                E+M  + P        T  GNPLA    I +L+++      E    +  +L Q L
Sbjct: 262 YGGRAEIMKMVAPAGPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGL 321
Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
               ++F + V      G+F       TA PV+ Y+
Sbjct: 322 LDAAREFGHEVCGGHISGMFGLF---FTAGPVTNYE 354

>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From Rhodobacter Sphaeroides Kd131 Length = 476

Iteration: 1
 Score =  100 bits (249), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/227 (32%), Positives = 115/227 (50%), Gaps = 21/227 (9%)
Query: 127 DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
           D IA FL EPI    GVIIPP GY    + +C K++IL I+DE+ +G  R G   AS+  
Sbjct: 220 DTIAAFLAEPILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKV 279
Query: 187 -EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE--------HGSTFGGNPLASAV 237
             V PD++   K +  G +P+   LA  E +L    GE        +G T+   P+A A 
Sbjct: 280 FGVVPDIITFAKGVTSGYVPLGG-LAISEAVLARISGENAKGSWFTNGYTYSNQPVACAA 338
Query: 238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE--FDKTAL 295
           A+A+++++  E + +++  + +     L  + +  P  V E R  GL   V+   D T  
Sbjct: 339 ALANIELMEREGIVDQAREMADYFAAALASL-RDLPG-VAETRSVGLVGCVQCLLDPTRA 396
Query: 296 PVSAYD--ICLKMKER----GILAKPTHDTIVRLTPPLSISSNELQE 336
             +A D    LK+ ER    G++ +P  D  V ++PPL IS  ++ E
Sbjct: 397 DGTAEDKAFTLKIDERCFELGLIVRPLGDLCV-ISPPLIISRAQIDE 442

>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde Aminotransferase Complexed With Pyridoxamine-5'-Phosphate From Bacillus Subtilis Length = 438

Iteration: 1
 Score = 99.0 bits (245), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 68/217 (31%), Positives = 109/217 (50%), Gaps = 22/217 (10%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           ++V  +++G E   +AL+LAR  GY  +        I+   GC+HG   + +  +    A
Sbjct: 118 EIVRMVSSGTEATMSALRLAR--GYTGRN------KILKFEGCYHGHGDSLLIKAGSGVA 169
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
             G  P  PG         + V + D+ +++  F++ G+ IAG + EP+ G  GV+ P +
Sbjct: 170 TLGL-PDSPGVPEGIAKNTITVPYNDLESVKLAFQQFGEDIAGVIVEPVAGNMGVVPPQE 228
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
           G+L+ +RD+  +Y  L+I DE+ +G  R     A  +  V PD+  LGK +GGG +PV A
Sbjct: 229 GFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFGVTPDLTCLGKVIGGG-LPVGA 286
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASL 242
                E+M  I P        T  GNPLA    + +L
Sbjct: 287 YGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETL 323

>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Bacillus Anthracis With Bound Pyridoxal 5'phosphate Length = 429

Iteration: 1
 Score = 95.5 bits (236), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 112/236 (47%), Gaps = 25/236 (10%)
Query: 28  ERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA 87
           ER+ S+   ++V  +N+G E   +AL+LAR  GY  +        I+   GC+HG   + 
Sbjct: 104 ERVPSI---EIVRXVNSGTEATXSALRLAR--GYTGRN------KILKFIGCYHGHGDSL 152
Query: 88  ISMSCDNEAIRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQG 139
           +  +    A  G  P  PG         + V + D+ +++  F++ GD IA  + EP+ G
Sbjct: 153 LIKAGSGVATLGL-PDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAG 211
Query: 140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKAL 199
             GV+ P  G+L+ +R++  +   L+I DE+ +G  R        +  V PD+  LGK +
Sbjct: 212 NXGVVPPQPGFLEGLREVTEQNGALLIFDEVXTGF-RVAYNCGQGYYGVTPDLTCLGKVI 270
Query: 200 GGGVIPVSAVLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRDEKLAE 252
           GGG +PV A     E+   + P        T  GNPLA A    +L  +  E   E
Sbjct: 271 GGG-LPVGAYGGKAEIXRQVAPSGPIYQAGTLSGNPLAXAAGYETLVQLTPESYVE 325

>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde Aminotransferase From Yersinia Pestis Co92 Length = 429

Iteration: 1
 Score = 92.0 bits (227), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 80/265 (30%), Positives = 119/265 (44%), Gaps = 29/265 (10%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           D V  +N+G E   +A++LAR  GY  +        I+   GC+HG     + +   + A
Sbjct: 110 DXVRXVNSGTEATXSAIRLAR--GYTGRD------KIIKFEGCYHGHA-DCLLVKAGSGA 160
Query: 97  IRGFGPLLPG--------HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
           +    P  PG         L   + D+ ++ + F++   ++A  + EP+ G    I P  
Sbjct: 161 LTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNXNCIPPLP 220
Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSA 208
            +L  +R LC ++  L+I DE+ +G  R     A D+  V PD+  LGK +GGG  PV A
Sbjct: 221 EFLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGX-PVGA 278
Query: 209 VLADKEVMLCIQPG---EHGSTFGGNPLASAVAIASLDVIRD----EKLAERSAHLGEEL 261
               +EV   + P        T  GNP+A A   A L  I      E L E +  L   L
Sbjct: 279 FGGRREVXNALAPTGPVYQAGTLSGNPIAXAAGFACLTEISQVGVYETLTELTDSLATGL 338
Query: 262 RQHLFKIQQQFPNYVKEVRGR-GLF 285
           R H  K ++  P  V  V G  GLF
Sbjct: 339 R-HAAK-EENIPLVVNHVGGXFGLF 361

>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate Semialdehyde Aminotransferase Length = 434

Iteration: 1
 Score = 90.1 bits (222), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 70/248 (28%), Positives = 112/248 (45%), Gaps = 34/248 (13%)
Query: 37  DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
           D V  +N+G E V T +++AR +    K        I    GC+HG +   +  +     
Sbjct: 112 DKVRFVNSGTEAVXTTIRVARAYTGRTK--------IXKFAGCYHGHSDLVLVAA----- 158
Query: 97  IRGFGPLLPGH--------------LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAG 142
             G GP   G               + V F ++  L++   + G ++A  L EPI G  G
Sbjct: 159 --GSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFG 216
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
           ++ P  G+L+ V +L  +   L+I DE+ +   R     A D   V PD+  LG  +GGG
Sbjct: 217 IVEPKPGFLEKVNELVHEAGALVIYDEVITAF-RFXYGGAQDLLGVTPDLTALGXVIGGG 275
Query: 203 VIPVSAVLADKEV---MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGE 259
            +P+ A    KE+   +  + P     T  GNP + A  IA L+V++ E L E+   LG 
Sbjct: 276 -LPIGAYGGKKEIXEQVAPLGPAYQAGTXAGNPASXASGIACLEVLQQEGLYEKLDELGA 334
Query: 260 ELRQHLFK 267
            L + + +
Sbjct: 335 TLEKGILE 342

>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig Length = 472

Iteration: 1
 Score = 81.3 bits (199), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 83/354 (23%), Positives = 142/354 (40%), Gaps = 54/354 (15%)
Query: 35  GYDMVLPMNTGAEGVETALKLARKWGYVKKK----FSIDE--------------AIIVSC 76
           G   ++ M  G+   E A K    W   K++    FS +E                I+S 
Sbjct: 126 GMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSF 185
Query: 77  CGCFHGRTLAAISMSCDNEAIRGFG------PLLP-GHLKVDFGDIT---------ALEK 120
            G FHGRT+  ++ +  ++AI          P+ P   LK    +            LE+
Sbjct: 186 MGAFHGRTMGCLA-TTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEE 244
Query: 121 I------FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL 174
           +      +++    +AG + EPIQ E G     D + + +RD+  K+    + DE+Q+G 
Sbjct: 245 VEDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGG 304
Query: 175 ARSGRMLASD-WEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231
             +G+  A + W    P   M    K + GG          KE      P    +T+ G+
Sbjct: 305 GSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF-------HKEEFRPNAPYRIFNTWLGD 357
Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD 291
           P  + +    +++I+ E L   +AH G+ L   L  +Q ++P ++  VRGRG F    FD
Sbjct: 358 PSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTF--CSFD 415
Query: 292 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
                +    I +  + +G++     D  +R  P L    +          D+L
Sbjct: 416 TPDESIRNKLISI-ARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468

>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A Bacterial Aminotransferase Length = 465

Iteration: 1
 Score = 60.1 bits (144), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 78/310 (25%), Positives = 118/310 (38%), Gaps = 41/310 (13%)
Query: 25  VFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR 83
           +FAE +   F   D+V   N+G E    AL  A      K   + D        G +HG 
Sbjct: 144 LFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAITGRKTVLAFD--------GGYHGG 195
Query: 84  TLAAISMSCDNEAIRGFGPLLPGHLKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAG 142
            L   S      A        P H+ +  + D+     + K  G   A  L EP+ G  G
Sbjct: 196 LLNFASGHAPTNA--------PYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGG 247
Query: 143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG 202
            +     +L  +R   S+   L+I DE+ +     G   A +   +  D+  LGK +GGG
Sbjct: 248 CVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG--AQEMLGISADLTTLGKYIGGG 305
Query: 203 VIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHL 257
            +   A    +++M    P       H  TF  N L  +   A+L  I   + A   +  
Sbjct: 306 -MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAASDLSAS 364
Query: 258 GEELRQHLFKI--QQQFPNYVKEVRGRGLFNAVEFD----KTALPVSAYDICLK------ 305
           G+  R +L +I  + Q P    +  G G    + F     ++A  V A D  LK      
Sbjct: 365 GDRFRANLNRIAVENQAP---LQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFFH 421
Query: 306 MKERGILAKP 315
           M  +GI   P
Sbjct: 422 MLRKGIYLAP 431

>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase (D-Phgat) From Pseudomonas Strutzeri St-201 Length = 453

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 71/253 (28%), Positives = 115/253 (45%), Gaps = 21/253 (8%)
Query: 26  FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR-- 83
           +AER+ + F    +  +     G ET L   R    V + F+    +I+   G +HG   
Sbjct: 102 WAERIVAAF--PSIRKLRFTGSGTETTLLALR----VARAFT-GRRMILRFEGHYHGWHD 154
Query: 84  -TLAAISMSCDNEAIRGFGPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEA 141
            + +  +   D +   G  P    + L +   DI  + ++F   G  IA F+ EP+    
Sbjct: 155 FSASGYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHF 214
Query: 142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG 201
           GV    D +L+   +L  +Y  L I DE+ SG  R G        +V+PD+  L KA   
Sbjct: 215 GVTPVSDSFLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKA-SA 272
Query: 202 GVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAH 256
           G +P   +   ++VM  +  G      H  TF GNP+ +A AIA++D I ++ +  +   
Sbjct: 273 GGLPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAIDTILEDDVCAKIND 332
Query: 257 LGEELRQ---HLF 266
           LG+  R+   HLF
Sbjct: 333 LGQFAREAMNHLF 345

>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel Beta-phenylalanine Aminotransferase From Variovorax Paradoxus Length = 454

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 68/234 (29%), Positives = 95/234 (40%), Gaps = 36/234 (15%)
Query: 43  NTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP 102
           N+G E    AL  A  +   +K        IV   G +HG  L             GFG 
Sbjct: 150 NSGTEANLMALTAALHFTGRRK--------IVVFSGGYHGGVL-------------GFGA 188
Query: 103 L-LPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
              P  +  DF      D        +  G +IA  L EP+QG +G I     +L+A+R+
Sbjct: 189 RPSPTTVPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRE 248
Query: 157 LCSKYNILMIADEI-QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
             ++   L++ DE+  S LA  G  LA+    +R D+  LGK +GGG +   A     +V
Sbjct: 249 SATQVGALLVFDEVMTSRLAPHG--LANKL-GIRSDLTTLGKYIGGG-MSFGAFGGRADV 304
Query: 216 MLCIQPGE----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
           M    P      H  TF  N +  A   A L  +   + A   A  GE LR  L
Sbjct: 305 MALFDPRTGPLAHSGTFNNNVMTMAAGYAGLTKLFTPEAAGALAERGEALRARL 358

>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 53.5 bits (127), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/217 (21%), Positives = 92/217 (42%), Gaps = 17/217 (7%)
Query: 128 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
            +   + EP I G  G+ +    + + + + C    I +I DE+ +G  R G    ++  
Sbjct: 594 HVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 240
             +PD+    K L GG++P++  LA   V              HG ++  + +  A A  
Sbjct: 654 GCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAK 713
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 294
           ++   +D +        G+ LR+ L+  ++ QQ  ++  V+ V   G   A+E    A  
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 295 ---LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLS 328
                + A  + + ++E GI  +P  + I  +  P +
Sbjct: 773 SGYASLYAKSLLIMLREDGIFTRPLGNVIYLMCGPCT 809

>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional Dapa Aminotransferase-Dethiobiotin Synthetase From Arabidopsis Thaliana In Its Apo Form. Length = 831

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/209 (22%), Positives = 85/209 (40%), Gaps = 17/209 (8%)
Query: 128 QIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
            +   + EP I G  G       + + + + C    I +I DE+ +G  R G    ++  
Sbjct: 594 HVGALIIEPVIHGAGGXHXVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELL 653
Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIA 240
             +PD+    K L GG +P++  LA   V              HG ++  +    A A  
Sbjct: 654 GCKPDIACFAKLLTGGXVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAK 713
Query: 241 SLDVIRDEKLAERSAHLGEELRQHLF--KIQQQFPNY--VKEVRGRGLFNAVEFDKTA-- 294
           ++   +D +        G+ LR+ L+  ++ QQ  ++  V+ V   G   A+E    A  
Sbjct: 714 AIQWFKDPETNHNITSQGKTLRE-LWDEELVQQISSHSAVQRVVVIGTLFALELKADASN 772
Query: 295 ---LPVSAYDICLKMKERGILAKPTHDTI 320
                + A  + + ++E GI  +P  + I
Sbjct: 773 SGYASLYAKSLLIXLREDGIFTRPLGNVI 801

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
1z7d_A	433	Ornithine aminotransferase; structural genomics co	0.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	0.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	0.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	1e-132
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	1e-119
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	1e-118
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	1e-117
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	1e-117
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	1e-113
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	1e-113
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	1e-112
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	1e-110
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	1e-110
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	1e-109
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	1e-107
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	1e-101
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-84
3nui_A	478	Pyruvate transaminase; amino transferase, transfer	2e-82
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	5e-81
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	5e-80
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	1e-79
3hmu_A	472	Aminotransferase, class III; structural genomics,	7e-79
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	2e-78
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	2e-77
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	1e-75
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	1e-75
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	1e-74
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	8e-61
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	1e-41
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	2e-39
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	1e-36
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	2e-36
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	4e-36
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	8e-36
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	8e-36
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	3e-33
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-07
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	2e-06

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A Length = 433

 Score =  549 bits (1416), Expect = 0.0
 Identities = 158/345 (45%), Positives = 224/345 (64%), Gaps = 5/345 (1%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
            A+  QA+ LT+ SRAF++    +    LT++ GYD VL MNTGAE  ETA KL RKWGY
Sbjct: 88  NAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGY 147

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             KK   + A IV C   F GRTL  IS S   +    FGP  P   KV + D+ ALE+ 
Sbjct: 148 EVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEE 207

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
            K+    +  F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++L
Sbjct: 208 LKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLL 265

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
                 V+PD+++LGKAL GG  P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + +
Sbjct: 266 CVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA 325

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L+V+ +EKL E +  LG    ++L +  +     V++VRG+GL  A+EF      V+  D
Sbjct: 326 LNVLINEKLCENAEKLGGPFLENLKRELKDSK-IVRDVRGKGLLCAIEFKNEL--VNVLD 382

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           ICLK+KE G++ +  HD  +RLTPPL I+  +L E ++ +   ++
Sbjct: 383 ICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVK 427

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} Length = 392

 Score =  546 bits (1410), Expect = 0.0
 Identities = 163/344 (47%), Positives = 230/344 (66%), Gaps = 11/344 (3%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
            AL +QA ++TL+SRAF++D+   + E++  +   +MVLPMNTGAE VETA+K AR+W Y
Sbjct: 59  NALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAY 118

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             KK   + A I+ C   FHGRT+ A+SMS + E  RGFGP+LPG + + +GD+ AL+  
Sbjct: 119 DVKKVEANRAEIIVCEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAA 178

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                   A F+ EPIQGEAG+ IPP G+LK   ++C K N+L +ADEIQ+GL R+G++ 
Sbjct: 179 I---TPNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRTGKVF 235

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A DW+ V PDM ILGKALGGGV P+S   A+++++   +PG HGSTFGGNPLA AV+IA+
Sbjct: 236 ACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIAA 295

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L+V+ +EKL ERS  LGE+L   L +I       + EVRG+GLF  +E ++      A  
Sbjct: 296 LEVLEEEKLTERSLQLGEKLVGQLKEID---NPMITEVRGKGLFIGIELNE-----PARP 347

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            C ++K  G+L K TH+ ++R+ PPL IS  +L+   + +  VL
Sbjct: 348 YCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVL 391

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A* Length = 439

 Score =  548 bits (1413), Expect = 0.0
 Identities = 174/345 (50%), Positives = 232/345 (67%), Gaps = 6/345 (1%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
            AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWGY
Sbjct: 99  NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGY 158

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
             K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+ 
Sbjct: 159 TVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERA 218

Query: 122 FKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRML 181
                  +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR L
Sbjct: 219 L--QDPNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWL 276

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS 241
           A D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEHGST+GGNPL   VAIA+
Sbjct: 277 AVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIAA 336

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +      A+ 
Sbjct: 337 LEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKE-TKDWDAWK 392

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  + 
Sbjct: 393 VCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTIL 437

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A* Length = 395

 Score =  382 bits (984), Expect = e-132
 Identities = 113/347 (32%), Positives = 176/347 (50%), Gaps = 23/347 (6%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKW 59
           +A++ QAE L    +         F   LT++   ++  V P+N+G E  E ALK AR  
Sbjct: 68  EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH 127

Query: 60  GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITAL 118
              KK         V+    F GRT+ ++S++      R  F PL+     + + D+ AL
Sbjct: 128 TGRKK--------FVAAMRGFSGRTMGSLSVT-WEPKYREPFLPLVEPVEFIPYNDVEAL 178

Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
           ++      ++ A  + EP+QGE GV      +L+A R++  +   L+I DEIQ+G+ R+G
Sbjct: 179 KRAV---DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 235

Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238
           +  A +   + PD++ L KALGGGV P+   +  +EV   +  G HG+TFGGNPLA A  
Sbjct: 236 KRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAG 294

Query: 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 298
           +A++  +   +L ER+A LG    + L  I       ++EVRG GL   +E  + A    
Sbjct: 295 VAAIRYLERTRLWERAAELGPWFMEKLRAIPSP---KIREVRGMGLMVGLELKEKA---- 347

Query: 299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
           A  I    KE  +LA     T++R  PPL I   +L+   +A+  VL
Sbjct: 348 APYIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 394

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A Length = 451

 Score =  351 bits (903), Expect = e-119
 Identities = 105/377 (27%), Positives = 174/377 (46%), Gaps = 41/377 (10%)

Query: 1   MKALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLA 56
           ++A++ Q    T +       + +    E+L  +    G       N+G+E VE A+K+A
Sbjct: 83  VEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA 142

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD- 114
           R   +  K        +V+    +HGRT   ++++      + GFGP  P   +      
Sbjct: 143 RS--HTHKPA------VVAFDHAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYP 194

Query: 115 -----------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR 155
                                  +  +    D +A  + EPIQGE G I+P DG+L  + 
Sbjct: 195 FRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEPIQGEGGFIVPADGFLPTLL 254

Query: 156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV 215
           D C K +++ IADE+Q+G AR+G M A + E + PD+++  K + GG+ P+SAV    E+
Sbjct: 255 DWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAVTGRAEI 313

Query: 216 MLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY 275
           M        G T+GGNP+A A A+A+++ I  E L  R+  + + ++  L ++Q +    
Sbjct: 314 MDSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD-R 372

Query: 276 VKEVRGRGLFNAVEF----DKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSI 329
           + +VRGRG   A+E                +C      G++     T+  +VR  PPLSI
Sbjct: 373 IGDVRGRGAMIAMELVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSI 432

Query: 330 SSNELQEGSKALHDVLE 346
             + L EG   L +VL 
Sbjct: 433 GDDLLNEGLDVLEEVLR 449

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A* Length = 420

 Score =  347 bits (893), Expect = e-118
 Identities = 113/346 (32%), Positives = 169/346 (48%), Gaps = 10/346 (2%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +AL+ Q E L  +S  F N+       +L      + VL MN+G E  ETA KLAR +  
Sbjct: 80  EALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYAC 139

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEK 120
              + S  +  I++    FHGR+L  +S+         GFGP     + V F D+ A++ 
Sbjct: 140 --VRHSPFKTKIIAFHNAFHGRSLFTVSVG-GQPKYSDGFGPKPADIIHVPFNDLHAVKA 196

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +     D     + EPIQGE GV      +LK +RDLC ++  L++ DE+Q G+ R+G +
Sbjct: 197 VM---DDHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDL 253

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   KALGGG  PVSA+L  +E+      G HGST+GGNPLA AVA A
Sbjct: 254 FAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGA 312

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           + D+I   ++ +      ++  QHL  I +QF     ++RG GL    E         A 
Sbjct: 313 AFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFD-IFSDIRGMGLLIGAELKP-KYKGRAR 370

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           D      E G++       ++R  P L +   ++ EG +     + 
Sbjct: 371 DFLYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVG 416

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A* Length = 397

 Score =  345 bits (887), Expect = e-117
 Identities = 112/346 (32%), Positives = 181/346 (52%), Gaps = 14/346 (4%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
           +A+++QAEKL   S  F+N      AE L+       V   NTG E  E A+K+ARK+G 
Sbjct: 63  EAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYGK 122

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEK 120
            K   S  +  I+S    FHGRTL +++ +      +  F PL+PG    +F ++  L +
Sbjct: 123 KK---SEKKYRILSAHNSFHGRTLGSLTAT-GQPKYQKPFEPLVPGFEYFEFNNVEDLRR 178

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
                 + +     EPIQGE+G++     +L+  R LC +Y+ L++ DE+Q G+ R+G++
Sbjct: 179 KM---SEDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKL 235

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
            A     V PD++   K LGGGV P+ AV+   E    ++PG+HG+TFGGNPLA    + 
Sbjct: 236 FAYQKYGVVPDVLTTAKGLGGGV-PIGAVIV-NERANVLEPGDHGTTFGGNPLACRAGVT 293

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
            +  +  E   E     G  L + L ++++++   V +VRG GL   ++F +    VS  
Sbjct: 294 VIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-VVADVRGMGLMIGIQFRE---EVSNR 349

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           ++  K  E  +L  P  +  +R  PPL++   E+    + L  VL+
Sbjct: 350 EVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQ 395

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp} Length = 395

 Score =  344 bits (884), Expect = e-117
 Identities = 107/347 (30%), Positives = 180/347 (51%), Gaps = 14/347 (4%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGY 61
             ++ Q +KL  +S  +YN+     A+ L      + V   N+G E +E A+K ARK+ +
Sbjct: 59  AKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYAF 118

Query: 62  VKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALEK 120
            K    +     ++    FHGRTL A+S++  NE  +  F PL+ G     + DI+++EK
Sbjct: 119 NK---GVKGGQFIAFKHSFHGRTLGALSLT-ANEKYQKPFKPLISGVKFAKYNDISSVEK 174

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
           +     ++    + E +QGE G+      + KA+R LC + +IL+IADEIQ G+ RSG+ 
Sbjct: 175 LV---NEKTCAIILESVQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKF 231

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAI 239
            A +  ++ PD++   KALG G+  V A + +++V    ++ G+HGST+GGNPL  A   
Sbjct: 232 FAYEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVN 290

Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299
           A  ++ ++EK+ E    L   L Q L ++  +F  + K+ +G G    +  DK    V  
Sbjct: 291 AVFEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGFMQGLSLDK---SVKV 346

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             +  K +E  +L     +  +R  PPL +    + E S+ L   L+
Sbjct: 347 AKVIQKCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALK 393

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A* Length = 426

 Score =  336 bits (865), Expect = e-113
 Identities = 92/370 (24%), Positives = 174/370 (47%), Gaps = 34/370 (9%)

Query: 1   MKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLA 56
           + A++ Q +KL+    +    + +    E +            L + TG+E VE A+K+A
Sbjct: 63  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 122

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD- 114
           R     K+         ++  G +HGRT   ++++        G G +     +  +   
Sbjct: 123 RA--ATKRSG------TIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCP 174

Query: 115 ---------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI 163
                    I ++ +IFK   + + IA  + EP+QGE G       +++ +R LC ++ I
Sbjct: 175 LHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGI 234

Query: 164 LMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE 223
           ++IADE+QSG  R+G + A +   V PD+    K++ GG  P++ V    EVM  + PG 
Sbjct: 235 MLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG 293

Query: 224 HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG 283
            G T+ GNP+A   A+  L V   E L +++  LG++L+  L  I ++ P  + +VRG G
Sbjct: 294 LGGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLG 352

Query: 284 LFNAVEF-----DKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISSNELQE 336
              A+E                +I  + +++G++      +  ++R+  PL+I   ++++
Sbjct: 353 AMIAIELFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQ 412

Query: 337 GSKALHDVLE 346
           G + +    +
Sbjct: 413 GLEIISQCFD 422

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A Length = 449

 Score =  336 bits (864), Expect = e-113
 Identities = 88/374 (23%), Positives = 141/374 (37%), Gaps = 33/374 (8%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPV-----FAERLTSMF---GYDMVLPMNTGAEGVETAL 53
              +  AE +  +     N          F E    +        +  +  GA  VE AL
Sbjct: 77  DDREFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENAL 136

Query: 54  KLARKWGYVK----KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI--RGFGPLLPGH 107
           K A  W                 ++   G FHGR+   +S++   +      F       
Sbjct: 137 KAAFDWKSRHNQAHGIDPALGTQVLHLRGAFHGRSGYTLSLTN-TKPTITARFPKFDWPR 195

Query: 108 LKVDFG---------------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152
           +   +                 +      F+     IA F+ EPIQGE G       +  
Sbjct: 196 IDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAEPIQGEGGDRHFRPEFFA 255

Query: 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLAD 212
           A+R+LC +++ L+I DE+Q+G   +G   A    +V PD+V  GK      +     + +
Sbjct: 256 AMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDE 315

Query: 213 KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF 272
               +   P    ST+GGN      A   L+VI  E L ER+   G+ LR  L ++   F
Sbjct: 316 VADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADF 375

Query: 273 PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSN 332
           P  V + RGRGL  A             ++  ++ +R ++  P     VR  PPL++S+ 
Sbjct: 376 PAVVLDPRGRGLMCAFSLPT---TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTA 432

Query: 333 ELQEGSKALHDVLE 346
           E+     A+   L 
Sbjct: 433 EIDAAIAAVRSALP 446

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus} Length = 375

 Score =  332 bits (854), Expect = e-112
 Identities = 113/346 (32%), Positives = 175/346 (50%), Gaps = 23/346 (6%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWG 60
           +AL+EQ EKL   S  + N      A +L   F  +  V   N+G E VE A+KLARK+ 
Sbjct: 51  EALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKYW 110

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGDITALE 119
             K     ++   +S    FHGRT  ++S +        GF PL+PG       DI ++ 
Sbjct: 111 RDK---GKNKWKFISFENSFHGRTYGSLSAT-GQPKFHKGFEPLVPGFSYAKLNDIDSVY 166

Query: 120 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 179
           K+     ++ AG + E IQGE GV    + +L  ++++C + ++L+I DE+Q+G+ R+G 
Sbjct: 167 KLL---DEETAGIIIEVIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGE 223

Query: 180 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 239
             A     ++PD++ L K LGGGV P+ A+LA +EV     PG HGSTFGGNPLA     
Sbjct: 224 FYAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGT 282

Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299
             +D +  EKL      +G   ++ L ++ +       +V+GRGL   +E ++       
Sbjct: 283 VVVDEV--EKLLPHVREVGNYFKEKLKELGK------GKVKGRGLMLGLELERECKDYVL 334

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
                K  E+G+L   T   ++R  PPL I    +      L ++L
Sbjct: 335 -----KALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A* Length = 433

 Score =  328 bits (844), Expect = e-110
 Identities = 102/377 (27%), Positives = 165/377 (43%), Gaps = 42/377 (11%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARK 58
           +  + E A KL        +      A RL ++   G D  L ++TGAE  E A+++A+ 
Sbjct: 65  VSVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKL 124

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD---- 114
                K        IV     +HG T AA S +      +G GP   G   +        
Sbjct: 125 --VTGKYE------IVGFAQSWHGMTGAAASATYSAGR-KGVGPAAVGSFAIPAPFTYRP 175

Query: 115 ----------ITALEKIFK----ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160
                     +  L+  F     +S   +A F+ EPI    G+I  PDGY+ A++  C  
Sbjct: 176 RFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEA 235

Query: 161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 220
             +L+I DE Q+G+ R+G M A   + V PD++ L K LG G +P++A++    +     
Sbjct: 236 RGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAG-LPLAAIVTSAAIEERAH 294

Query: 221 PG--EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE 278
                  +T   +PL +AV +  LDV++ + L  R+  +G+ LR+ L  + ++F   + +
Sbjct: 295 ELGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGD 353

Query: 279 VRGRGLFNAVEF-----DKTALPVSAYDICLKMKERGILAK----PTHDTIVRLTPPLSI 329
           VRGRGL   VE       K         I  +    G+       P    + R+ PPL++
Sbjct: 354 VRGRGLLLGVEIVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTV 413

Query: 330 SSNELQEGSKALHDVLE 346
           S +E+  G   L   +E
Sbjct: 414 SEDEIDLGLSLLGQAIE 430

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus} Length = 453

 Score =  328 bits (844), Expect = e-110
 Identities = 104/372 (27%), Positives = 168/372 (45%), Gaps = 36/372 (9%)

Query: 1   MKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLA 56
             A+ +QA   T         +++   AE L ++            N+GAE VE A+K+A
Sbjct: 86  AAAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA 145

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD- 114
           R      +        +V+    +HGRT   ++++  +   +  FGP  P   ++     
Sbjct: 146 RL--ATGRPA------VVAFDNAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYP 197

Query: 115 ------------ITALEKIFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK 160
                               +       +A  + EPIQGE G I+P  G+L  +    S+
Sbjct: 198 LRDEPGLTGEEAARRAISRIETQIGAQSLAAIIIEPIQGEGGFIVPAPGFLATLTAWASE 257

Query: 161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ 220
             ++ IADE+Q+G AR+G   AS+ E + PD+V + K + GG +P+SAV    E+M  + 
Sbjct: 258 NGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVY 316

Query: 221 PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR 280
            G  G T+GGNP+  A A+A+L V+R+  L  R+  +   +   L  + ++    + EVR
Sbjct: 317 AGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD-IIGEVR 375

Query: 281 GRGLFNAVEF----DKTALPVSAYDICLKMKERG--ILAKPTHDTIVRLTPPLSISSNEL 334
           GRG   A+E                I  +   +G  IL   T   ++RL PPL I  + L
Sbjct: 376 GRGAMLAIEIVKPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLL 435

Query: 335 QEGSKALHDVLE 346
            EG  AL D++ 
Sbjct: 436 DEGITALSDIIR 447

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii} Length = 419

 Score =  324 bits (833), Expect = e-109
 Identities = 111/375 (29%), Positives = 184/375 (49%), Gaps = 52/375 (13%)

Query: 1   MKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLA 56
           +K   EQ +KL   ++  FYN      A++L +    +    V   N+G E +E ++K+ 
Sbjct: 65  IKIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVV 124

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR-GFGPLLPGHLKVDFGD- 114
           +  G  +K        I++  G FHGRT  +IS++      R   GP +PG + V + + 
Sbjct: 125 KNTG--RKY-------IIAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNP 175

Query: 115 --------------------ITALEK-IFKE--SGDQIAGFLFEPIQGEAGVIIPPDGYL 151
                               I  +E  IF      +++AG  FEPIQGE G +IPP  + 
Sbjct: 176 YRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGIFFEPIQGEGGYVIPPKNFF 235

Query: 152 KAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLA 211
             ++ L  KY IL++ DE+Q GL R+G++ A +     PD++ L KALGGG++P+ A + 
Sbjct: 236 AELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIF 295

Query: 212 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ 271
            K++    +PG H +TFGGN LA A+    +D++  + L      +G+   + L  +   
Sbjct: 296 RKDLDF--KPGMHSNTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGL--- 348

Query: 272 FPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISS 331
                 +VRG GL   +E+++         I  +  +RG+L  P   + +R+ PPL IS 
Sbjct: 349 ----ADDVRGIGLAWGLEYNE---KKVRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISE 401

Query: 332 NELQEGSKALHDVLE 346
            E ++G   L  V++
Sbjct: 402 EEAKQGLDILKKVIK 416

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A* Length = 439

 Score =  319 bits (821), Expect = e-107
 Identities = 91/372 (24%), Positives = 169/372 (45%), Gaps = 39/372 (10%)

Query: 1   MKALQEQAEKLT-LSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLA 56
           + A+   A      +  +  N      AERL + F   G   +   ++G++  E A +  
Sbjct: 65  VAAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI 124

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-- 114
            K     +        +++  G +HG T+ +++ S  +  ++       G + + + D  
Sbjct: 125 VK--ATGRSG------VIAFAGAYHGCTVGSMAFSGHS--VQADAAKADGLILLPYPDPY 174

Query: 115 ------------ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY 161
                       +T L +         I     EPIQ + G+I+PPDG+L+   D+C  +
Sbjct: 175 RPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLIVPPDGFLRKFADICRAH 234

Query: 162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 221
            IL++ DE++ GLARSGR+   + E   PD+++LGK LGGG +P+SAV+A  E++ C   
Sbjct: 235 GILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDC-AS 292

Query: 222 GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG 281
                T  GNP+++A  +A L+ I  + L   +   G  LR  L ++ ++ P  + ++RG
Sbjct: 293 AFAMQTLHGNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRG 351

Query: 282 RGLFNAVEF-----DKTALPVSAYDICLKMKERGILAKP--THDTIVRLTPPLSISSNEL 334
           RGL   +E       +         +  +  + G++      +  ++  TPPL+I+  ++
Sbjct: 352 RGLACGMELVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDI 411

Query: 335 QEGSKALHDVLE 346
            +    L     
Sbjct: 412 HKALDLLDRAFS 423

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A* Length = 472

 Score =  306 bits (785), Expect = e-101
 Identities = 76/394 (19%), Positives = 144/394 (36%), Gaps = 59/394 (14%)

Query: 1   MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETAL 53
           +K +Q+     T  +R A        F E+L          G   ++ M  G+   E A 
Sbjct: 85  VKLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAF 144

Query: 54  KLARKWGYVKKKFSIDEAI------------------IVSCCGCFHGRTLAAISMSCDNE 95
           K    W   K++     +                   I+S  G FHGRT+  ++ +  ++
Sbjct: 145 KTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTH-SK 203

Query: 96  AI--RGFGPLLPGHLKV-----------------DFGDITALEKIFKE---SGDQIAGFL 133
           AI                                +   +  +E +  +       +AG +
Sbjct: 204 AIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGII 263

Query: 134 FEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PD 191
            EPIQ E G     D + + +RD+  K+    + DE+Q+G   +G+  A +   +    D
Sbjct: 264 VEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPAD 323

Query: 192 MVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA 251
           ++   K +  G           E      P    +T+ G+P  + +    +++I+ E L 
Sbjct: 324 VMTFSKKMMTGG-FFHK-----EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLL 377

Query: 252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI 311
             +AH G+ L   L  +Q ++P ++  VRGRG F + +    ++      +    + +G+
Sbjct: 378 SNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI---RNKLISIARNKGV 434

Query: 312 LAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
           +     D  +R  P L    +          D+L
Sbjct: 435 MLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDIL 468

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis} Length = 452

 Score =  263 bits (674), Expect = 1e-84
 Identities = 97/389 (24%), Positives = 174/389 (44%), Gaps = 54/389 (13%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWG 60
           +A  +Q + L+    +  ++     AE+L     G  ++   N+G+E  ETA K+AR++ 
Sbjct: 72  EAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYY 131

Query: 61  YV-----KKKF-SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--- 111
                  + KF S            +HG T+A ++ +   +    + P   G L V    
Sbjct: 132 AQKGEPHRYKFMSRYRG--------YHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPD 183

Query: 112 ------------FGD--ITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRD 156
                       +    +  ++++      + IA F+ EPI    G+++ P  Y+KAV +
Sbjct: 184 CYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITGGGILMAPQDYMKAVHE 243

Query: 157 LCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM 216
            C K+  L+I+DE+  G  R+G+       +V+PD++ + K +    +P+SA    +E+ 
Sbjct: 244 TCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIY 303

Query: 217 LCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ 270
              +         H +TFGGNP A A+A+ +L++I +E L ERSA +G  L + L +   
Sbjct: 304 EAFKGKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIG 363

Query: 271 QFPNYVKEVRGRGLFNAVEF-----DKTALPVS--------AYDICLKMKERGILAKPTH 317
           + P  V ++RG+GL   +E       K  +             +  L +   G+     +
Sbjct: 364 EHP-LVGDIRGKGLLVGIELVNDKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYN 422

Query: 318 DTIVRLTPPLSISSNELQEGSKALHDVLE 346
           + +  L PPL ISS E+      L   +E
Sbjct: 423 NILT-LAPPLVISSEEIAFVIGTLKTAME 450

>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A {Vibrio fluvialis} Length = 478

 Score =  258 bits (661), Expect = 2e-82
 Identities = 102/400 (25%), Positives = 167/400 (41%), Gaps = 62/400 (15%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETA 52
            A + Q E+        Y+  F          +E+L  +  +D   V   N+G+E  +T 
Sbjct: 84  DAAKAQYERF-----PGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTM 138

Query: 53  LKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 108
           +K+        G  +K+       I++    +HG T  + SM+        FG  LPG +
Sbjct: 139 VKMLWFLHAAEGKPQKR------KILTRWNAYHGVTAVSASMT-GKPYNSVFGLPLPGFV 191

Query: 109 KV----------------DFGDITALE---KIFKESGDQIAGFLFEPIQGEAGVIIPPDG 149
            +                 F    A E    I +E  D IAGF  EP+ G  GVI P  G
Sbjct: 192 HLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVMGAGGVIPPAKG 251

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           Y +A+  +  KY+I +I+DE+  G  R+G        +  PD +I  K L  G  P+ AV
Sbjct: 252 YFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAV 311

Query: 210 LADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELR 262
           +   E+   ++          HG T  G+P+  A+A+ ++DV+ +E LAE    L     
Sbjct: 312 ILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFE 371

Query: 263 QHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAK 314
           + L  I  + PN + E RG G   A+E       KT    +   +  I     + G++ +
Sbjct: 372 ERLKHI-AERPN-IGEYRGIGFMWALEAVKDKASKTPFDGNLSVSERIANTCTDLGLICR 429

Query: 315 PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK 354
           P   ++V L PP  ++  ++ E    L   L+    ++  
Sbjct: 430 PLGQSVV-LCPPFILTEAQMDEMFDKLEKALDKVFAEVAA 468

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, pyridoxal phosphate, PSI-2, protein structure initiative; 1.70A {Deinococcus radiodurans} Length = 430

 Score =  253 bits (648), Expect = 5e-81
 Identities = 102/382 (26%), Positives = 167/382 (43%), Gaps = 44/382 (11%)

Query: 2   KALQEQAEKLTLSSRAFY-NDKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARK 58
           + +  QA +L     + + +D    +A RL    G        ++ G+E  E+A+KLAR+
Sbjct: 52  ERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQ 111

Query: 59  W----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV---- 110
           +    G   +        +++    +HG +L +++ S        + PL+          
Sbjct: 112 YHVERGEPGRF------KVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK 165

Query: 111 ----DFGDITA--LEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYN 162
                 G   A  L  + +  G + +A F+ EP+ G     + P  GY + VRD+C +  
Sbjct: 166 PDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAG 225

Query: 163 ILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP 221
           I+ IADE+ SG+ R G  LA   W  V PD+ +LGK L  G  P++ +LA  +V   +  
Sbjct: 226 IIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETVMG 285

Query: 222 GE----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK 277
           G     HG T+ G+P++ A  ++ LD++  E L   +   G +L   L  +Q +FP  + 
Sbjct: 286 GSGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFP-QMM 344

Query: 278 EVRGRGLFNAVEF----DKTALPVS--AYDICLKMKERGILAKPTHDTIVR-------LT 324
           +VRG GL   V         A      A  I     +RG++  P              L 
Sbjct: 345 QVRGTGLLLGVVLGDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLG 404

Query: 325 PPLSISSNELQEGSKALHDVLE 346
           PPLSI++ E+      L   LE
Sbjct: 405 PPLSITAAEVDGLLALLAGALE 426

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida} Length = 449

 Score =  251 bits (643), Expect = 5e-80
 Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 62/392 (15%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETA 52
           +A+ +Q   L      +    F       F  AE++T +   ++  V   ++G+E   TA
Sbjct: 73  EAVAKQLSTL-----DYSP-GFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTA 126

Query: 53  LKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 108
           +K+ R +    G   K        ++     +HG  +A  S+   N   + FG  +    
Sbjct: 127 VKMVRAYWRLKGQATKT------KMIGRARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVD 180

Query: 109 KV----------------DFGDITA---LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG 149
            +                + G   A   L+ I       IA    EP+ G AGV++PP+G
Sbjct: 181 HLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAGSAGVLVPPEG 240

Query: 150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAV 209
           YLK  R++C+++NIL++ DE+ +G  R+G M  +D   V PD++ + K +  G IP+ AV
Sbjct: 241 YLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAV 300

Query: 210 LADKEVMLCIQPGE---------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
           +A  E+                 HG T+  +P+A A  +A+L +++ E L +  A +   
Sbjct: 301 IASTEIYQTFMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPH 360

Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEF--DKTALPVSAYDICLKMKERGILAKPTHD 318
             + L  I +   N V ++R  GL  A++         V  ++  + + + G   +   D
Sbjct: 361 FEKALHGI-KGAKN-VIDIRNFGLAGAIQIAPRDGDAIVRPFEAGMALWKAGFYVRFGGD 418

Query: 319 TIVRLTPPLSISSNELQE----GSKALHDVLE 346
           T+    P  +    +L        + L+ +L+
Sbjct: 419 TLQ-FGPTFNSKPQDLDRLFDAVGEVLNKLLD 449

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A* Length = 460

 Score =  250 bits (641), Expect = 1e-79
 Identities = 97/396 (24%), Positives = 156/396 (39%), Gaps = 66/396 (16%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETA 52
            A+  QA+ L     A+Y+             A+ +       M  V    +G++  ET 
Sbjct: 74  DAIATQAKNL-----AYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETN 128

Query: 53  LKLARKWGYV-----KKKF-SIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG 106
           +KL   +  V     KKK  S            +HG  +   S++  +     F      
Sbjct: 129 IKLIWYYNNVLGRPEKKKIISRWRG--------YHGSGVMTGSLTGLDLFHNAFDLPRAP 180

Query: 107 HLKV----------------DFGDITA--LE-KIFKESGDQIAGFLFEPIQGEAGVIIPP 147
            L                   F    A  LE  I  E  + IA F+ EPI G  G++ PP
Sbjct: 181 VLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPILGTGGIVPPP 240

Query: 148 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVS 207
            GY + ++ +  KY++L++ADE+ +G  R G M  SD   ++PD++ + K L     P+S
Sbjct: 241 AGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLS 300

Query: 208 AVLADKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEE 260
            V+    V   +  G        HG T+  +P+  A  +A+L++I +  L   +   G  
Sbjct: 301 GVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAY 360

Query: 261 LRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGIL 312
            R  L K      N V EVRG G+  AVEF     D+     S      +   +   G++
Sbjct: 361 FRAELAKAVGGHKN-VGEVRGDGMLAAVEFVADKDDRVFFDASQKIGPQVATALAASGVI 419

Query: 313 --AKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             A P  D +    PPL ++  +         D ++
Sbjct: 420 GRAMPQGDILG-FAPPLCLTREQADIVVSKTADAVK 454

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi} Length = 472

 Score =  249 bits (637), Expect = 7e-79
 Identities = 90/408 (22%), Positives = 172/408 (42%), Gaps = 56/408 (13%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETA 52
           +    Q  +L      +YN  F     P    A++L  +   D+  V     G+E  +T 
Sbjct: 78  EVAARQMREL-----PYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTN 132

Query: 53  LKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 108
           +++ R +    G  +K       +I+S    +HG T+A+ ++      +     L+P   
Sbjct: 133 IRMVRTYWQNKGQPEKT------VIISRKNAYHGSTVASSALGG-MAGMHAQSGLIPDVH 185

Query: 109 KVD---------------FGDITA--LE-KIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 150
            ++               FG   A  LE  I +   +++A F+ EP+QG  GVI+ PD Y
Sbjct: 186 HINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQGAGGVIVAPDSY 245

Query: 151 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 210
              ++ +C KY+IL+IADE+  G  R+G    +    +RP ++ + K L  G  P+   +
Sbjct: 246 WPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSI 305

Query: 211 ADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKI 268
              EV   I   E  HG T+ G+P+A+AVA+ +L ++ +E + +   ++     +  ++ 
Sbjct: 306 VCDEVAHVIGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEA 365

Query: 269 QQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS----AYDICLKMKERGILAKPTHDT 319
               P  V E +  G+  ++        +           Y    +     ++ +   D 
Sbjct: 366 LTDHPL-VGEAKIVGMMASIALTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDR 424

Query: 320 IVRLTPPLSISSNELQEGSKALHDVLELDLPKMRKPKPADAPATPCHR 367
           ++ ++PPL I+  E+ E    +   L+    ++ K     +     H 
Sbjct: 425 MI-ISPPLVITPAEIDEMFVRIRKSLDEAQAEIEKQGLMKSEGHHHHH 471

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} PDB: 3drd_A 3du4_A* Length = 448

 Score =  247 bits (632), Expect = 2e-78
 Identities = 98/359 (27%), Positives = 169/359 (47%), Gaps = 49/359 (13%)

Query: 27  AERLTSMFGYDM--VLPMNTGAEGVETALKLARK-W---GYVKKKFSIDEAIIVSCCGCF 80
           AE L  +    +  V   ++GAE +E ALK+A + W   G  +K+        ++    +
Sbjct: 93  AETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ------KFIAMKNGY 146

Query: 81  HGRTLAAISMSCDNEAIRG-FGPLLPGHLKVDF----------------GDITALEKIFK 123
           HG T+ A+S+    E     +GPL+    K                     +  L ++ +
Sbjct: 147 HGDTIGAVSV-GSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLE 205

Query: 124 ESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA 182
           E  ++IA    E  +QG +G+I+ P+GYL  VR+LC+ Y++LMI DE+ +G  R+G+M A
Sbjct: 206 EHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFA 265

Query: 183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-------HGSTFGGNPLAS 235
            + E V+PD++  GK + GG +P++   A +++               HG ++ GN L  
Sbjct: 266 CEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGHSYTGNQLGC 325

Query: 236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL 295
           AVA+ +L +   E + E+ A   ++L   L  +    P+ V ++R  G     E  ++  
Sbjct: 326 AVALENLALFESENIVEQVAEKSKKLHFLLQDL-HALPH-VGDIRQLGFMCGAELVRSKE 383

Query: 296 PVSAYD--------ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
               Y         + LKM+E G+L +P  D I    PPL+ ++ EL E    +   + 
Sbjct: 384 TKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIA-FLPPLASTAEELSEMVAIMKQAIH 441

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A* Length = 459

 Score =  244 bits (626), Expect = 2e-77
 Identities = 100/388 (25%), Positives = 166/388 (42%), Gaps = 56/388 (14%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF-----PVF--AERLTSMFGYDM--VLPMNTGAEGVETA 52
           +A + Q E+L      FYN  F      V   +  L  +       V   N+G+E V+T 
Sbjct: 73  EAARRQMEEL-----PFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTM 127

Query: 53  LKLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHL 108
           +++ R++    G  +KK       ++     +HG T+   S+             +PG  
Sbjct: 128 IRMVRRYWDVQGKPEKK------TLIGRWNGYHGSTIGGASLGGMKYMHEQGDLPIPGMA 181

Query: 109 KV---------------DFGDITA--LE-KIFKESGDQIAGFLFEPIQGEAGVIIPPDGY 150
            +               +FG + A  LE KI +   D++A F+ EPIQG  GVI+PP  Y
Sbjct: 182 HIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQGAGGVIVPPATY 241

Query: 151 LKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVL 210
              +  +C KY++L++ADE+  G  R+G          +PD+    K L  G +P+ AV 
Sbjct: 242 WPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYLPIGAVF 301

Query: 211 ADKEVMLCIQPGE---HGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLF 266
             K V   +  G    HG T+ G+P+ +AVA A++  +RDE + +R    +G  +++   
Sbjct: 302 VGKRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWR 361

Query: 267 KIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPTHD 318
           +   +F + V +VRG G+  A         +   P                 ++ +   D
Sbjct: 362 ETFSRFEH-VDDVRGVGMVQAFTLVKNKAKRELFPDFGEIGTLCRDIFFRNNLIMRACGD 420

Query: 319 TIVRLTPPLSISSNELQEGSKALHDVLE 346
            IV   PPL ++  E+ E        LE
Sbjct: 421 HIV-SAPPLVMTRAEVDEMLAVAERCLE 447

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A* Length = 457

 Score =  240 bits (614), Expect = 1e-75
 Identities = 93/341 (27%), Positives = 153/341 (44%), Gaps = 34/341 (9%)

Query: 27  AERLTSMF--GYDMVLPMNTGAEGVETALKLA----RKWGYVKKKFSIDEAIIVSCCGCF 80
           A+ L  +   G D V   ++G+  VE A K+A    R  G   K+       +++  G +
Sbjct: 124 AKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR------RLMTWRGGY 177

Query: 81  HGRTLAAISMSCDNEAIRG--FGPLLPGHLKVDF-------GDITALEKIFKESGDQIAG 131
           HG T  A+S+ CD        +  +L   +               A E    +   ++A 
Sbjct: 178 HGDTFLAMSI-CDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAA 236

Query: 132 FLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRP 190
            + EP+ QG  G+      YL  +RD+C +Y +L+I DEI +G  R+G + A+D   V P
Sbjct: 237 VVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSP 296

Query: 191 DMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIASLDVI 245
           D++ +GKAL GG + ++A L   +V   I  G      HG TF  NPLA AV++AS++++
Sbjct: 297 DIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMHGPTFMANPLACAVSVASVELL 356

Query: 246 RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK 305
             +    R   L   L   L   +      V +VR  G    +E D+   PV        
Sbjct: 357 LGQDWRTRITELAAGLTAGLDTARAL--PAVTDVRVCGAIGVIECDR---PVDLAVATPA 411

Query: 306 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
             +RG+  +P  + +    PP   +  E+ + + A+ +V  
Sbjct: 412 ALDRGVWLRPFRNLVY-AMPPYICTPAEITQITSAMVEVAR 451

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A* Length = 429

 Score =  239 bits (612), Expect = 1e-75
 Identities = 100/345 (28%), Positives = 163/345 (47%), Gaps = 39/345 (11%)

Query: 27  AERLTSMF--GYDMVLPMNTGAEGVETALKLA----RKWGYVKKKFSIDEAIIVSCCGCF 80
             +L +M     + V   ++G+  VE A+K+A    +  G  +++F       ++    +
Sbjct: 92  CRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKGEARQRF-------LTFRNGY 144

Query: 81  HGRTLAAISMSCDNEAI--RGFGPLLPGHLKVDF-----------GDITALEKIFKESGD 127
           HG T  A+S+ CD +      +   LP +L                D+    ++      
Sbjct: 145 HGDTFGAMSV-CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRH 203

Query: 128 QIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE 186
           +IA  + EPI QG  G+ +    +LK +R +C +  IL+IADEI +G  R+G++ A +  
Sbjct: 204 EIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHA 263

Query: 187 EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE-----HGSTFGGNPLASAVAIAS 241
           E+ PD++ LGKAL GG + +SA L  +EV   I  GE     HG TF GNPLA A A AS
Sbjct: 264 EIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCFMHGPTFMGNPLACAAANAS 323

Query: 242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD 301
           L ++      ++ A +  +LR+ L   +      V +VR  G    VE      PV+   
Sbjct: 324 LAILESGDWQQQVADIEVQLREQLAPARDA--EMVADVRVLGAIGVVETTH---PVNMAA 378

Query: 302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           +     E+G+  +P    I  L PP  I   +LQ  + A++  ++
Sbjct: 379 LQKFFVEQGVWIRPFGKLIY-LMPPYIILPQQLQRLTAAVNRAVQ 422

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2} Length = 476

 Score =  238 bits (609), Expect = 1e-74
 Identities = 90/412 (21%), Positives = 160/412 (38%), Gaps = 61/412 (14%)

Query: 2   KALQEQAEKLTLSSRAFYNDKF----PVF--AERLTSMFGYDM--VLPMNTGAEGVETAL 53
            A+  QA  L      + +  +    P    AE++ ++   D+  +     G+  V++AL
Sbjct: 77  DAMAHQAMVL-----PYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSAL 131

Query: 54  KLARKW----GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK 109
           + +  +    G  +KK       I+     +HG T    + +        F         
Sbjct: 132 RFSEFYNNVLGRPQKK------RIIVRYDGYHGSTALTAACTGRTGNWPNFDIAQDRISF 185

Query: 110 V--------------DFGDITA---LEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK 152
           +               F D       ++I     D IA FL EPI    GVIIPP GY  
Sbjct: 186 LSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASGGVIIPPAGYHA 245

Query: 153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILGKALGGGVIPVSAVLA 211
             + +C K++IL I+DE+ +G  R G   AS+    V PD++   K +  G +P+  +  
Sbjct: 246 RFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYVPLGGLAI 305

Query: 212 DKEVMLCIQPGE-------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQH 264
            + V+  I           +G T+   P+A A A+A+++++  E + +++  + +     
Sbjct: 306 SEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAA 365

Query: 265 LFKIQQQFPNYVKEVRGRGLFNAVEF-----DKTALPVS---AYDICLKMKERGILAKPT 316
           L  + +  P  V E R  GL   V+                    I  +  E G++ +P 
Sbjct: 366 LASL-RDLPG-VAETRSVGLVGCVQCLLDPTRADGTAEDKAFTLKIDERCFELGLIVRPL 423

Query: 317 HDTIVRLTPPLSISSNELQEGSKALHDVLE--LDLPKMRKPKPADAPATPCH 366
            D  V ++PPL IS  ++ E    +   +        +   +PA       H
Sbjct: 424 GDLCV-ISPPLIISRAQIDEMVAIMRQAITEVSAAHGLTAKEPAAVEGHHHH 474

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A* Length = 831

 Score =  208 bits (531), Expect = 8e-61
 Identities = 69/401 (17%), Positives = 123/401 (30%), Gaps = 83/401 (20%)

Query: 26  FAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI-------IVS 75
            AE L    G      V   + G+  +E ALK+A +   V   F             +++
Sbjct: 429 CAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIA 488

Query: 76  CCGCFHGRTLAAISMSCDNEAIRG-FGPLL------------------------PGHLKV 110
             G +HG TL A+          G                              P     
Sbjct: 489 LRGSYHGDTLGAMEA-QAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSE 547

Query: 111 DFGD------------------------ITALEKIFKE-----SGDQIAGFLFEPI-QGE 140
              +                           L K  +E         +   + EP+  G 
Sbjct: 548 IAPEYGTFTSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGA 607

Query: 141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG 200
            G+ +    + + + + C    I +I DE+ +G  R G    ++    +PD+    K L 
Sbjct: 608 GGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLT 667

Query: 201 GGVIPVSAVLADKEVMLCIQPGE------HGSTFGGNPLASAVAIASLDVIRDEKLAERS 254
           GG++P++  LA   V              HG ++  + +  A A  ++   +D +     
Sbjct: 668 GGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNI 727

Query: 255 AHLGEELRQHLFKIQ----QQFPNYVKEVRGRGLFNAVEFD-----KTALPVSAYDICLK 305
              G+ LR+   +            V+ V   G   A+E            + A  + + 
Sbjct: 728 TSQGKTLRELWDEELVQQISSHSA-VQRVVVIGTLFALELKADASNSGYASLYAKSLLIM 786

Query: 306 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           ++E GI  +P  + I  L      S    +     L+  L 
Sbjct: 787 LREDGIFTRPLGNVIY-LMCGPCTSPEICRRLLTKLYKRLG 826

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A* Length = 465

 Score =  151 bits (383), Expect = 1e-41
 Identities = 64/256 (25%), Positives = 98/256 (38%), Gaps = 38/256 (14%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
           FAE +   F   D+V   N+G E    AL  A       +     F           G +
Sbjct: 145 FAEAVCDRFPSIDLVRFTNSGTEANLMALATAT--AITGRKTVLAFD----------GGY 192

Query: 81  HGRTLAAISMSCDNEAIRGFGPL-LPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQ 138
           HG  L   S         G  P   P H +   + D+     + K  G   A  L EP+ 
Sbjct: 193 HGGLLNFAS---------GHAPTNAPYHVVLGVYNDVEGTADLLKRHGHDCAAILVEPML 243

Query: 139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLASDWEEVRPDMVILGK 197
           G  G +     +L  +R   S+   L+I DE+ +  L+  G   A +   +  D+  LGK
Sbjct: 244 GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMTSRLSGGG---AQEMLGISADLTTLGK 300

Query: 198 ALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASLDVIRDEKLAE 252
            +GGG +   A    +++M    P   G+     TF  N L  +   A+L  I   + A 
Sbjct: 301 YIGGG-MSFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILTMSAGHAALTQIYTRQAAS 359

Query: 253 RSAHLGEELRQHLFKI 268
             +  G+  R +L +I
Sbjct: 360 DLSASGDRFRANLNRI 375

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri} Length = 453

 Score =  144 bits (366), Expect = 2e-39
 Identities = 68/330 (20%), Positives = 117/330 (35%), Gaps = 65/330 (19%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT 84
           +AER+ + F     +    +G E    AL++AR   +  ++       I+   G +HG  
Sbjct: 102 WAERIVAAFPSIRKLRFTGSGTETTLLALRVAR--AFTGRRM------ILRFEGHYHGWH 153

Query: 85  --LAAISMSCDNEAIRGFGPLLPGH-------------LKVDFGDITALEKIFKESGDQI 129
              A+           G+     G              L +   DI  + ++F   G  I
Sbjct: 154 DFSAS-----------GYNSHFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDI 202

Query: 130 AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLASDWEE 187
           A F+ EP+    GV    D +L+   +L  +Y  L I DE+ SG  +   G        +
Sbjct: 203 AAFIAEPVGSHFGVTPVSDSFLREGAELARQYGALFILDEVISGFRVGNHG---MQALLD 259

Query: 188 VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAVAIASL 242
           V+PD+  L KA  GG +P   +   ++VM  +  G         TF GNP+ +A AIA++
Sbjct: 260 VQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVLHQGTFTGNPITAAAAIAAI 318

Query: 243 DVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPV 297
           D I +     K+ +      E +     +  +              L   +  + T    
Sbjct: 319 DTILEDDVCAKINDLGQFAREAMNHLFAR--KGLNWLAYGRFSGFHLMPGLPPNTTDTGS 376

Query: 298 SAYDICLK------------MKERGILAKP 315
                  +            +   G+    
Sbjct: 377 ITRAEVARPDVKMIAAMRMALILEGVDIGG 406

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} Length = 434

 Score =  136 bits (346), Expect = 1e-36
 Identities = 81/275 (29%), Positives = 121/275 (44%), Gaps = 61/275 (22%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
           FA+ L       D V  +N+G E V T +++AR   Y  +    KF+          GC+
Sbjct: 100 FAKMLKEAMPALDKVRFVNSGTEAVMTTIRVAR--AYTGRTKIMKFA----------GCY 147

Query: 81  HGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITALEKIFK 123
           HG +   L A        A  G GP   G               + V F ++  L++   
Sbjct: 148 HGHSDLVLVA--------A--GSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALD 197

Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRML 181
           + G ++A  L EPI G  G++ P  G+L+ V +L  +   L+I DE+ +       G   
Sbjct: 198 KWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYDEVITAFRFMYGG--- 254

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 236
           A D   V PD+  LGK +GGG +P+ A    KE+M  + P   G      T  GNP + A
Sbjct: 255 AQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPL--GPAYQAGTMAGNPASMA 311

Query: 237 VAIASLDVIRD----EKLAERSAHLGEELRQHLFK 267
             IA L+V++     EKL E  A L + + +   K
Sbjct: 312 SGIACLEVLQQEGLYEKLDELGATLEKGILEQAAK 346

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A* Length = 434

 Score =  136 bits (344), Expect = 2e-36
 Identities = 81/274 (29%), Positives = 123/274 (44%), Gaps = 59/274 (21%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
            AE++        M+  +N+G E   TA++LAR  GY  +    KF           GC+
Sbjct: 101 LAEKILGYVKRGGMIRFVNSGTEATMTAIRLAR--GYTGRDLILKFD----------GCY 148

Query: 81  HGRT----LAAISMSCDNEAIRG---FG-PLLPG-------H-LKVDFGDITALEKIFKE 124
           HG      +AA S             +G P   G         L   + D+ ALE++F E
Sbjct: 149 HGSHDAVLVAAGS---------AAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAE 199

Query: 125 SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRMLA 182
            GD+IAG + EP+   AGVI P   +L A++ L  +   L+I DE+ +G  L   G   A
Sbjct: 200 YGDRIAGVIVEPVIANAGVIPPRREFLAALQRLSRESGALLILDEVVTGFRLGLEG---A 256

Query: 183 SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASAV 237
             +  +  D+++LGK +GGG  PV AV   +EVM  + P   G      TF  +P+  A 
Sbjct: 257 QGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQ--GKVFNAGTFNAHPITMAA 313

Query: 238 AIASLDVIRD----EKLAERSAHLGEELRQHLFK 267
            +A+L  + +        E +  L E   + L +
Sbjct: 314 GLATLKALEEEPVYSVSREAAKALEEAASEVLDR 347

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A* Length = 427

 Score =  135 bits (342), Expect = 4e-36
 Identities = 74/275 (26%), Positives = 120/275 (43%), Gaps = 61/275 (22%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
            AE +       +MV  +N+G E     L++ R   Y  +    KF           GC+
Sbjct: 97  LAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMR--AYTGRDKIIKFE----------GCY 144

Query: 81  HGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITALEKIFK 123
           HG     L          A  G G    G               L   + D+ A++ +F 
Sbjct: 145 HGHADMFLVK--------A--GSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFA 194

Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRML 181
           E+  +IAG + EPI G +G I+P  G+L+ +R++  +++ L++ DE+ +G  +A  G   
Sbjct: 195 ENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVITGFRIAYGG--- 251

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 236
             +   V PD+  LGK +GGG +PV A    +E+M  + P   G      T  GNPLA  
Sbjct: 252 VQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPA--GPMYQAGTLSGNPLAMT 308

Query: 237 VAIASLDVIRD----EKLAERSAHLGEELRQHLFK 267
             I +L+++R     E L + +  L + L     +
Sbjct: 309 AGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQE 343

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis} Length = 429

 Score =  134 bits (340), Expect = 8e-36
 Identities = 80/275 (29%), Positives = 119/275 (43%), Gaps = 61/275 (22%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
            A+ +T +    DMV  +N+G E   +A++LAR  GY  +    KF           GC+
Sbjct: 98  MAQLVTDLVPTMDMVRMVNSGTEATMSAIRLAR--GYTGRDKIIKFE----------GCY 145

Query: 81  HGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITALEKIFK 123
           HG     L          A  G G L  G               L   + D+ ++ + F+
Sbjct: 146 HGHADCLLVK--------A--GSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFE 195

Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRML 181
           +   ++A  + EP+ G    I P   +L  +R LC ++  L+I DE+ +G  +A +G   
Sbjct: 196 QYPQEVACIIVEPVAGNMNCIPPLPEFLPGLRALCDEFGALLIIDEVMTGFRVALAG--- 252

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 236
           A D+  V PD+  LGK +GGG +PV A    +EVM  + P   G      T  GNP+A A
Sbjct: 253 AQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVMNALAPT--GPVYQAGTLSGNPIAMA 309

Query: 237 VAIASLDVIRD----EKLAERSAHLGEELRQHLFK 267
              A L  I      E L E +  L   LR    +
Sbjct: 310 AGFACLTEISQVGVYETLTELTDSLATGLRHAAKE 344

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} PDB: 3bs8_A* Length = 429

 Score =  134 bits (340), Expect = 8e-36
 Identities = 73/274 (26%), Positives = 117/274 (42%), Gaps = 60/274 (21%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
            A+ +       ++V  +N+G E   +AL+LAR  GY  +    KF           GC+
Sbjct: 98  LAKLVIERVPSIEIVRMVNSGTEATMSALRLAR--GYTGRNKILKFI----------GCY 145

Query: 81  HGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITALEKIFK 123
           HG     L          A  G G    G               + V + D+ +++  F+
Sbjct: 146 HGHGDSLLIK--------A--GSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFE 195

Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRML 181
           + GD IA  + EP+ G  GV+ P  G+L+ +R++  +   L+I DE+ +G  +A +    
Sbjct: 196 QFGDDIACVIVEPVAGNMGVVPPQPGFLEGLREVTEQNGALLIFDEVMTGFRVAYNC--- 252

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 236
              +  V PD+  LGK +GGG +PV A     E+M  + P   G      T  GNPLA A
Sbjct: 253 GQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIMRQVAPS--GPIYQAGTLSGNPLAMA 309

Query: 237 VAIASLDVIRD---EKLAERSAHLGEELRQHLFK 267
               +L  +      +   ++  L   LR+   K
Sbjct: 310 AGYETLVQLTPESYVEFERKAEMLEAGLRKAAEK 343

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus} Length = 424

 Score =  127 bits (321), Expect = 3e-33
 Identities = 83/276 (30%), Positives = 133/276 (48%), Gaps = 63/276 (22%)

Query: 26  FAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFSIDEAIIVSCCGCF 80
            A+++   +   D+V  +N+G E   +AL+LAR  GY  +    KF           G +
Sbjct: 97  LAKKVKRAYPFVDLVRFVNSGTEATMSALRLAR--GYTGRPYIVKFR----------GNY 144

Query: 81  HGRT---LAAISMSCDNEAIRGFGPLLPGH--------------LKVDFGDITALEKIFK 123
           HG     L          A  G G L  G               L +++ D   L ++ K
Sbjct: 145 HGHADGLLVE--------A--GSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLK 194

Query: 124 ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG--LARSGRML 181
             G++IA  +FEP+ G AGV++P + +LKA+ +    Y +L+IADE+ +G  LA  G   
Sbjct: 195 RRGEEIAAIIFEPVVGNAGVLVPTEDFLKALHE-AKAYGVLLIADEVMTGFRLAFGG--- 250

Query: 182 ASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-----TFGGNPLASA 236
           A++   ++PD+V LGK LGGG +P +A    +E+M  + P   G      T  GNPLA A
Sbjct: 251 ATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIMEKVAPL--GPVYQAGTLSGNPLAMA 307

Query: 237 VAIASLDVIRD-----EKLAERSAHLGEELRQHLFK 267
             +A+L+++ +       L +  A L   L++ L +
Sbjct: 308 AGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKE 343

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2 Length = 467

 Score = 59.0 bits (142), Expect = 8e-10
 Identities = 63/350 (18%), Positives = 114/350 (32%), Gaps = 47/350 (13%)

Query: 26  FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 85
             ++   +F YD ++P + G         +  K+          +A        FH  T 
Sbjct: 81  LKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQ-----KEGKAKNPVFISNFHFDTT 135

Query: 86  AAISMSCDNEAIRGFGP-LLPGHLKVDFG---DITALEK-IFKESGDQIAGFLFEPIQGE 140
           AA       +AI              D+    DI  L++ I +   D I   +       
Sbjct: 136 AAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNS 195

Query: 141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA------RSGRMLASDWEEVRPDMVI 194
           AG        LK V ++  ++ I ++ D  +          R  +   +  +EV  DM  
Sbjct: 196 AGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFDMYK 255

Query: 195 LG--------KALGGGVIPVSAVLADKEVMLCI----QPGEHGSTFGGNP--LASAVAIA 240
                     K     +  + A+  ++E+         P E   T+GG      +A+   
Sbjct: 256 YADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAMVQG 315

Query: 241 SLDVIRDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV---EFDKTA 294
             +   +E L  R     +LG+ LR+    IQ     +   V  + L   +   +F   A
Sbjct: 316 LEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCKKLVPQIPGDQFPAQA 375

Query: 295 LPVSAYDIC-LKMKERGILA----------KPTHDTIVRLTPPLSISSNE 333
           +  + Y    ++  E G             K      +RLT    + +N+
Sbjct: 376 VINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTND 425

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 50.6 bits (120), Expect = 6e-07
 Identities = 58/327 (17%), Positives = 95/327 (29%), Gaps = 101/327 (30%)

Query: 120 KIFKESGDQIA-GFLFEPIQGEA-GVIIPPDGYLKAVRDLC------SKYNI--LMIADE 169
           + F E   +I   FL  PI+ E     +    Y++    L       +KYN+  L    +
Sbjct: 80  QKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLK 139

Query: 170 IQSGLARSGRMLASDWEEVRPD--MVILGKALGGG--VIPVSAVLADKEVMLCIQPGEHG 225
           ++  L            E+RP   ++I G   G G   +    V    +V   +      
Sbjct: 140 LRQAL-----------LELRPAKNVLIDGVL-GSGKTWV-ALDVCLSYKVQCKMDFKIFW 186

Query: 226 STFG--GNPLASAVAIASLDVIRDEKLAERSAH----------LGEELRQHLFKIQQQFP 273
                  +P      +  L    D     RS H          +  ELR  L K  + + 
Sbjct: 187 LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELR-RLLK-SKPYE 244

Query: 274 N---YVKEVRGRGLFNAVEFD---KTAL------------PVSAYDICLKMKERG----- 310
           N    +  V+    +NA  F+   K  L              +   I L           
Sbjct: 245 NCLLVLLNVQNAKAWNA--FNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE 302

Query: 311 ---ILAKPTHDTIVRLTP------PLSIS--SNELQEG-----------SKALHDVLE-- 346
              +L K        L        P  +S  +  +++G              L  ++E  
Sbjct: 303 VKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESS 362

Query: 347 ---LDLPKMRK--------PKPADAPA 362
              L+  + RK        P  A  P 
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPT 389

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A* Length = 456

 Score = 48.6 bits (115), Expect = 2e-06
 Identities = 65/370 (17%), Positives = 117/370 (31%), Gaps = 54/370 (14%)

Query: 5   QEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYV-- 62
           ++ A  +        ++ F      +  +FG+  ++P + G        +LA K G    
Sbjct: 59  KQWAGMMMGDEAYAGSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLAIKPGQYVA 118

Query: 63  -KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKI 121
               F+                    + +  D          L    K D  D+  L+K+
Sbjct: 119 GNMYFTTTRYHQEKNGA-------VFVDIVRD----EAHDAGLNIAFKGDI-DLKKLQKL 166

Query: 122 FKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-------G 173
             E G + IA          AG        ++AVR+L   + I +  D  +         
Sbjct: 167 IDEKGAENIAYICLAVTVNLAGGQPVSMANMRAVRELTEAHGIKVFYDATRCVENAYFIK 226

Query: 174 LARSGRMLASDWEEVRP-----DMV------ILGKALGGGVIPVSAVLADKEVMLCIQPG 222
               G    S  E V       D             +GG +      +      L     
Sbjct: 227 EQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNIGGFLCMNDDEMFSSAKELV-VVY 285

Query: 223 EHGSTFGGN--PLASAVAIASLDVIRDEKLAER---SAHLGEELRQHLFKIQQQFPNYVK 277
           E   ++GG       A+AI   + ++ E +  R     +LG++L+     I +    +  
Sbjct: 286 EGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIVEPVGGHAV 345

Query: 278 EVRGRGLFNAV---EFDKTALPVSAYDIC-LKMKERGILAKPTHDT----------IVRL 323
            +  R     +   EF   +L  S Y    ++  ERGI++   ++            VRL
Sbjct: 346 FLDARRFCEHLTQDEFPAQSLAASIYVETGVRSMERGIISAGRNNVTGEHHRPKLETVRL 405

Query: 324 TPPLSISSNE 333
           T P  + +  
Sbjct: 406 TIPRRVYTYA 415

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
4atq_A	456	4-aminobutyrate transaminase; transferase; HET: PL	100.0
4e3q_A	473	Pyruvate transaminase; aminotransferase, transfera	100.0
3i5t_A	476	Aminotransferase; pyridoxal 5'-phosphate, PSI-2, N	100.0
1z7d_A	433	Ornithine aminotransferase; structural genomics co	100.0
3tfu_A	457	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
2oat_A	439	Ornithine aminotransferase; 5-fluoromethylornithin	100.0
3hmu_A	472	Aminotransferase, class III; structural genomics,	100.0
3nx3_A	395	Acoat, acetylornithine aminotransferase; csgid, st	100.0
3gju_A	460	Putative aminotransferase; pyridoxal phosphate, PL	100.0
3dod_A	448	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4a6r_A	459	Omega transaminase; transferase, PLP-binding enzym	100.0
4ao9_A	454	Beta-phenylalanine aminotransferase; HET: PLP; 1.5	100.0
3oks_A	451	4-aminobutyrate transaminase; ssgcid, transferase,	100.0
3n5m_A	452	Adenosylmethionine-8-amino-7-oxononanoate aminotr;	100.0
4ffc_A	453	4-aminobutyrate aminotransferase (GABT); structura	100.0
2pb2_A	420	Acetylornithine/succinyldiaminopimelate aminotran;	100.0
3i4j_A	430	Aminotransferase, class III; structural GENOMICS,N	100.0
3dxv_A	439	Alpha-amino-epsilon-caprolactam racemase; fold-TYP	100.0
3ruy_A	392	Ornithine aminotransferase; structural genomics, c	100.0
2cjg_A	449	L-lysine-epsilon aminotransferase; internal aldimi	100.0
4adb_A	406	Succinylornithine transaminase; transferase, PLP e	100.0
3l44_A	434	Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha	100.0
3a8u_X	449	Omega-amino acid--pyruvate aminotransferase; large	100.0
1zod_A	433	DGD, 2,2-dialkylglycine decarboxylase; pyridoxal,	100.0
4a0g_A	831	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3k28_A	429	Glutamate-1-semialdehyde 2,1-aminomutase 2; biosyn	100.0
4e77_A	429	Glutamate-1-semialdehyde 2,1-aminomutase; structur	100.0
1s0a_A	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
3fq8_A	427	Glutamate-1-semialdehyde 2,1-aminomutase; drug res	100.0
2ord_A	397	Acoat, acetylornithine aminotransferase; TM1785, a	100.0
2eo5_A	419	419AA long hypothetical aminotransferase; PLP enzy	100.0
2epj_A	434	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1sff_A	426	4-aminobutyrate aminotransferase; enzyme complexes	100.0
1ohv_A	472	4-aminobutyrate aminotransferase; PLP-dependent en	100.0
2e7u_A	424	Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzy	100.0
1vef_A	395	Acetylornithine/acetyl-lysine aminotransferase; PL	100.0
2eh6_A	375	Acoat, acetylornithine aminotransferase; ARGD, str	100.0
2cy8_A	453	D-phgat, D-phenylglycine aminotransferase; structu	100.0
2yky_A	465	Beta-transaminase; transferase; HET: PLP SFE; 1.69	100.0
3l8a_A	421	METC, putative aminotransferase, probable beta-cys	100.0
3op7_A	375	Aminotransferase class I and II; PLP-dependent tra	100.0
3aow_A	448	Putative uncharacterized protein PH0207; protein-P	100.0
1yiz_A	429	Kynurenine aminotransferase; glutamine transaminas	100.0
2w8t_A	427	SPT, serine palmitoyltransferase; HET: LLP; 1.25A	100.0
3euc_A	367	Histidinol-phosphate aminotransferase 2; YP_297314	99.98
4dq6_A	391	Putative pyridoxal phosphate-dependent transferas;	99.98
3dzz_A	391	Putative pyridoxal 5'-phosphate-dependent C-S LYA;	99.98
2zc0_A	407	Alanine glyoxylate transaminase; alanine:glyoxylat	99.98
3b46_A	447	Aminotransferase BNA3; kynurenine aminotransferase	99.97
3tqx_A	399	2-amino-3-ketobutyrate coenzyme A ligase; energy m	99.97
3nra_A	407	Aspartate aminotransferase; structural genomics, j	99.97
3fdb_A	377	Beta C-S lyase, putative PLP-dependent beta-cystat	99.97
1gd9_A	389	Aspartate aminotransferase; pyridoxal enzyme, temp	99.97
3ffh_A	363	Histidinol-phosphate aminotransferase; APC88260, l	99.97
2r2n_A	425	Kynurenine/alpha-aminoadipate aminotransferase mit	99.97
3kax_A	383	Aminotransferase, classes I and II; PLP, C-S lyase	99.97
2zyj_A	397	Alpha-aminodipate aminotransferase; alpha-aminoadi	99.97
3dyd_A	427	Tyrosine aminotransferase; PLP, SGC, structural ge	99.97
3ly1_A	354	Putative histidinol-phosphate aminotransferase; st	99.97
3g0t_A	437	Putative aminotransferase; NP_905498.1, putative a	99.97
1d2f_A	390	MALY protein; aminotransferase fold, large PLP-bin	99.97
1vp4_A	425	Aminotransferase, putative; structural genomics, j	99.97
2dou_A	376	Probable N-succinyldiaminopimelate aminotransfera;	99.97
1v2d_A	381	Glutamine aminotransferase; PLP, riken structural	99.97
2o1b_A	404	Aminotransferase, class I; aminotrasferase; HET: P	99.97
3fvs_A	422	Kynurenine--oxoglutarate transaminase 1; alpha bet	99.97
3kki_A	409	CAI-1 autoinducer synthase; quorum sensing, CQSA,	99.97
1c7n_A	399	Cystalysin; transferase, aminotransferase, pyridox	99.97
3h14_A	391	Aminotransferase, classes I and II; YP_167802.1, S	99.97
1j32_A	388	Aspartate aminotransferase; HET: PLP; 2.10A {Phorm	99.97
3ftb_A	361	Histidinol-phosphate aminotransferase; structural	99.97
3piu_A	435	1-aminocyclopropane-1-carboxylate synthase; fruit	99.97
1u08_A	386	Hypothetical aminotransferase YBDL; alpha beta pro	99.97
1o4s_A	389	Aspartate aminotransferase; TM1255, structural gen	99.97
3jtx_A	396	Aminotransferase; NP_283882.1, structural genomics	99.97
2o0r_A	411	RV0858C (N-succinyldiaminopimelate aminotransfera;	99.97
3ele_A	398	Amino transferase; RER070207001803, structural gen	99.97
3a2b_A	398	Serine palmitoyltransferase; vitamin B6-dependent	99.97
3cq5_A	369	Histidinol-phosphate aminotransferase; PLP, PMP, a	99.97
2z61_A	370	Probable aspartate aminotransferase 2; amino acid	99.97
2x5d_A	412	Probable aminotransferase; HET: LLP PLP; 2.25A {Ps	99.97
3ezs_A	376	Aminotransferase ASPB; NP_207418.1, structural gen	99.97
1fc4_A	401	2-amino-3-ketobutyrate conenzyme A ligase; 2-amino	99.97
1b5p_A	385	Protein (aspartate aminotransferase); pyridoxal en	99.97
1iay_A	428	ACC synthase 2, 1-aminocyclopropane-1-carboxylate	99.97
2x5f_A	430	Aspartate_tyrosine_phenylalanine pyridoxal-5' phos	99.97
1xi9_A	406	Putative transaminase; alanine aminotransferase, s	99.97
1bs0_A	384	Protein (8-amino-7-oxonanoate synthase); PLP-depen	99.97
3e2y_A	410	Kynurenine-oxoglutarate transaminase 3; alpha beta	99.97
3hdo_A	360	Histidinol-phosphate aminotransferase; PSI-II, his	99.97
3get_A	365	Histidinol-phosphate aminotransferase; NP_281508.1	99.97
2dr1_A	386	PH1308 protein, 386AA long hypothetical serine ami	99.97
2e7j_A	371	SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-st	99.97
1fg7_A	356	Histidinol phosphate aminotransferase; HISC, histi	99.96
3rq1_A	418	Aminotransferase class I and II; structural genomi	99.96
3qgu_A	449	LL-diaminopimelate aminotransferase; L-lysine, pyr	99.96
2gb3_A	409	Aspartate aminotransferase; TM1698, structural gen	99.96
1bw0_A	416	TAT, protein (tyrosine aminotransferase); tyrosine	99.96
3if2_A	444	Aminotransferase; YP_265399.1, structura genomics,	99.96
1lc5_A	364	COBD, L-threonine-O-3-phosphate decarboxylase; PLP	99.96
3ez1_A	423	Aminotransferase MOCR family; YP_604413.1, struct	99.96
1elu_A	390	L-cysteine/L-cystine C-S lyase; FES cluster biosyn	99.96
3ppl_A	427	Aspartate aminotransferase; dimer, PLP-dependent t	99.96
1kmj_A	406	Selenocysteine lyase; persulfide perselenide NIFS	99.96
3f9t_A	397	TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L	99.96
3g7q_A	417	Valine-pyruvate aminotransferase; NP_462565.1, str	99.96
3kgw_A	393	Alanine-glyoxylate aminotransferase; AAH25799.1, p	99.96
3d6k_A	422	Putative aminotransferase; APC82464, corynebacteri	99.96
2bwn_A	401	5-aminolevulinate synthase; tetrapyrrole biosynthe	99.96
3nnk_A	411	Ureidoglycine-glyoxylate aminotransferase; PLP-dep	99.96
3ei9_A	432	LL-diaminopimelate aminotransferase; lysine biosyn	99.96
3b1d_A	392	Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococ	99.92
3zrp_A	384	Serine-pyruvate aminotransferase (AGXT); HET: PLP;	99.96
1t3i_A	420	Probable cysteine desulfurase; PLP-binding enzyme,	99.96
1vjo_A	393	Alanine--glyoxylate aminotransferase; 17130350, AL	99.96
3asa_A	400	LL-diaminopimelate aminotransferase; PLP dependent	99.95
1m32_A	366	2-aminoethylphosphonate-pyruvate aminotransferase;	99.95
3f0h_A	376	Aminotransferase; RER070207000802, structural geno	99.95
2q7w_A	396	Aspartate aminotransferase; mechanism-based inhibi	99.95
1ajs_A	412	Aspartate aminotransferase; PIG, in the presence o	99.95
3t18_A	413	Aminotransferase class I and II; PSI-biology, MCSG	99.95
3fkd_A	350	L-threonine-O-3-phosphate decarboxylase; structura	99.95
1qz9_A	416	Kynureninase; kynurenine, tryptophan, PLP, vitamin	99.95
3isl_A	416	Purine catabolism protein PUCG; pyridoxalphosphate	99.95
2ay1_A	394	Aroat, aromatic amino acid aminotransferase; HET:	99.95
3lvm_A	423	Cysteine desulfurase; structural genomics, montrea	99.95
2rfv_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate, PL	99.95
3p1t_A	337	Putative histidinol-phosphate aminotransferase; PL	99.95
4f4e_A	420	Aromatic-amino-acid aminotransferase; ssgcid, stru	99.95
3cai_A	406	Possible aminotransferase; RV3778C; 1.80A {Mycobac	99.95
3f6t_A	533	Aspartate aminotransferase; YP_194538.1, STRU geno	99.95
1iug_A	352	Putative aspartate aminotransferase; wild type, py	99.95
1eg5_A	384	Aminotransferase; PLP-dependent enzymes, iron-sulf	99.95
2z9v_A	392	Aspartate aminotransferase; pyridoxamine, pyruvate	99.95
2ch1_A	396	3-hydroxykynurenine transaminase; PLP-enzyme, kynu	99.95
1yaa_A	412	Aspartate aminotransferase; HET: PLP; 2.05A {Sacch	99.94
1e5e_A	404	MGL, methionine gamma-lyase; methionine biosynthes	99.94
1cs1_A	386	CGS, protein (cystathionine gamma-synthase); lyase	99.94
2huf_A	393	Alanine glyoxylate aminotransferase; alpha and bet	99.94
3e9k_A	465	Kynureninase; kynurenine-L-hydrolase, kynurenine h	99.94
3fsl_A	397	Aromatic-amino-acid aminotransferase; tyrosine ami	99.94
1jg8_A	347	L-ALLO-threonine aldolase; glycine biosynthesis, p	99.94
4hvk_A	382	Probable cysteine desulfurase 2; transferase and I	99.94
1uu1_A	335	Histidinol-phosphate aminotransferase; histidine b	99.94
3qhx_A	392	Cystathionine gamma-synthase METB (CGS); structura	99.94
3mad_A	514	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.94
2yrr_A	353	Aminotransferase, class V; structural genomics, NP	99.94
3tcm_A	500	Alanine aminotransferase 2; pyridoxal phosphate (P	99.94
3ihj_A	498	Alanine aminotransferase 2; helix, structural geno	99.94
1gc0_A	398	Methionine gamma-lyase; pyridoxal-5'-phosphate; HE	99.93
4eb5_A	382	Probable cysteine desulfurase 2; scaffold, transfe	99.93
3ndn_A	414	O-succinylhomoserine sulfhydrylase; seattle struct	99.93
1svv_A	359	Threonine aldolase; structural genomics, structura	99.93
3ke3_A	379	Putative serine-pyruvate aminotransferase; structu	99.93
1mdo_A	393	ARNB aminotransferase; type 1 aminotransferase fol	99.93
3meb_A	448	Aspartate aminotransferase; pyridoxal PHOS transfe	99.93
3vax_A	400	Putative uncharacterized protein DNDA; desulfurase	99.93
1v72_A	356	Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2	99.93
7aat_A	401	Aspartate aminotransferase; transferase(aminotrans	99.93
1pff_A	331	Methionine gamma-lyase; homocysteine; 2.50A {Trich	99.93
2oga_A	399	Transaminase; PLP-dependent enzyme, desosamine, de	99.93
3dr4_A	391	Putative perosamine synthetase; deoxysugar, pyrido	99.93
2ez2_A	456	Beta-tyrosinase, tyrosine phenol-lyase; PLP-depend	99.93
1ax4_A	467	Tryptophanase; tryptophan biosynthesis, tryptophan	99.93
2cb1_A	412	O-acetyl homoserine sulfhydrylase; PLP enzyme, lya	99.93
3uwc_A	374	Nucleotide-sugar aminotransferase; lipopolysacchar	99.93
3mc6_A	497	Sphingosine-1-phosphate lyase; carboxy-lyase activ	99.92
1b9h_A	388	AHBA synthase, protein (3-amino-5-hydroxybenzoic a	99.92
3frk_A	373	QDTB; aminotransferase, sugar-modification, natura	99.92
2bkw_A	385	Alanine-glyoxylate aminotransferase 1; analine-gly	99.92
4eu1_A	409	Mitochondrial aspartate aminotransferase; ssgcid,	99.92
3nyt_A	367	Aminotransferase WBPE; PLP binding, nucleotide-sug	99.92
2zy4_A	546	L-aspartate beta-decarboxylase; pyridoxal 5'-phosp	99.92
1ibj_A	464	CBL, cystathionine beta-lyase; PLP-dependent enzym	99.92
2dkj_A	407	Serine hydroxymethyltransferase; PLP dependent enz	99.92
1qgn_A	445	Protein (cystathionine gamma-synthase); methionine	99.92
3a9z_A	432	Selenocysteine lyase; PLP, cytoplasm, pyridoxal ph	99.92
3acz_A	389	Methionine gamma-lyase; L-methionine; HET: LLP; 1.	99.92
1wyu_B	474	Glycine dehydrogenase subunit 2 (P-protein); alpha	99.92
1n8p_A	393	Cystathionine gamma-lyase; three open alpha/beta s	99.92
2oqx_A	467	Tryptophanase; lyase, pyridoxal phosphate, tryptop	99.92
1o69_A	394	Aminotransferase; structural genomics, unknown fun	99.91
3pj0_A	359	LMO0305 protein; structural genomics, joint center	99.91
3k7y_A	405	Aspartate aminotransferase; aminotrans pyridoxal p	99.91
3lws_A	357	Aromatic amino acid beta-eliminating lyase/threoni	99.91
2po3_A	424	4-dehydrase; external aldimine, PLP, aminotransfer	99.91
2fnu_A	375	Aminotransferase; protein-product complex, structu	99.91
3cog_A	403	Cystathionine gamma-lyase; CTH, PLP, propargylglyc	99.91
2aeu_A	374	Hypothetical protein MJ0158; selenocysteine syntha	99.91
2c81_A	418	Glutamine-2-deoxy-scyllo-inosose aminotransferase;	99.91
2vi8_A	405	Serine hydroxymethyltransferase; SHMT, E53Q, FTHF,	99.9
3nmy_A	400	Xometc, cystathionine gamma-lyase-like protein; Cy	99.9
2fq6_A	415	Cystathionine beta-lyase; protein-inhibitor comple	99.9
3ecd_A	425	Serine hydroxymethyltransferase 2; ssgcid, decode,	99.9
3ffr_A	362	Phosphoserine aminotransferase SERC; structural ge	99.9
2ctz_A	421	O-acetyl-L-homoserine sulfhydrylase; crystal, O-ac	99.9
3h7f_A	447	Serine hydroxymethyltransferase 1; cytoplasm, one-	99.9
4h51_A	420	Aspartate aminotransferase; ssgcid, structural gen	99.89
3bb8_A	437	CDP-4-keto-6-deoxy-D-glucose-3-dehydrase; aspartat	99.89
3ri6_A	430	O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate	99.89
2qma_A	497	Diaminobutyrate-pyruvate transaminase and L-2,4- d	99.89
3gbx_A	420	Serine hydroxymethyltransferase; structural genomi	99.89
3b8x_A	390	WBDK, pyridoxamine 5-phosphate-dependent dehydrase	99.89
2x3l_A	446	ORN/Lys/Arg decarboxylase family protein; lyase; H	99.88
2dgk_A	452	GAD-beta, GADB, glutamate decarboxylase beta; gadb	99.88
3n0l_A	417	Serine hydroxymethyltransferase; alpha beta class,	99.88
3ju7_A	377	Putative PLP-dependent aminotransferase; NP_978343	99.88
3bwn_A	391	AT1G70560, L-tryptophan aminotransferase; auxin sy	99.88
2z67_A	456	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.87
2jis_A	515	Cysteine sulfinic acid decarboxylase; pyridoxal ph	99.87
2okj_A	504	Glutamate decarboxylase 1; PLP-dependent decarboxy	99.87
1w23_A	360	Phosphoserine aminotransferase; pyridoxal-5'-phosp	99.86
3hbx_A	502	GAD 1, glutamate decarboxylase 1; calmodulin-bindi	99.85
1rv3_A	483	Serine hydroxymethyltransferase, cytosolic; one-ca	99.85
2c0r_A	362	PSAT, phosphoserine aminotransferase; pyridoxal-5'	99.84
3vp6_A	511	Glutamate decarboxylase 1; catalytic loop SWAP, ly	99.84
2fyf_A	398	PSAT, phosphoserine aminotransferase; PLP-dependen	99.84
2hox_A	427	ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINA	99.84
1js3_A	486	DDC;, DOPA decarboxylase; carbidopa, parkinson'S d	99.83
4e1o_A	481	HDC, histidine decarboxylase; lyase; HET: PLP PVH;	99.83
3k40_A	475	Aromatic-L-amino-acid decarboxylase; PLP dependent	99.83
3ht4_A	431	Aluminum resistance protein; lyase, putative cysta	99.82
2a7v_A	490	Serine hydroxymethyltransferase; structural genomi	99.82
1c4k_A	730	Protein (ornithine decarboxylase); lyase; HET: PLP	99.81
2vyc_A	755	Biodegradative arginine decarboxylase; pyridoxal p	99.8
3jzl_A	409	Putative cystathionine beta-lyase involved in ALU	99.79
3hvy_A	427	Cystathionine beta-lyase family protein, YNBB B.S	99.78
3i16_A	427	Aluminum resistance protein; YP_878183.1, carbon-s	99.78
1wyu_A	438	Glycine dehydrogenase (decarboxylating) subunit 1;	99.77
3e77_A	377	Phosphoserine aminotransferase; SERC, PLP, structu	99.74
3n75_A	715	LDC, lysine decarboxylase, inducible; pyridoxal-5'	99.74
3qm2_A	386	Phosphoserine aminotransferase; structural genomic	99.73
3hl2_A	501	O-phosphoseryl-tRNA(SEC) selenium transferase; sel	99.67
3m5u_A	361	Phosphoserine aminotransferase; alpha-beta half sa	99.66
3bc8_A	450	O-phosphoseryl-tRNA(SEC) selenium transferase; dis	99.63
3ou5_A	490	Serine hydroxymethyltransferase, mitochondrial; st	99.42

>4atq_A 4-aminobutyrate transaminase; transferase; HET: PLP; 2.75A {Arthrobacter aurescens} PDB: 4atp_A*

Probab=100.00  E-value=2.3e-47  Score=362.21  Aligned_cols=336  Identities=30%  Similarity=0.537  Sum_probs=289.6

Q ss_pred             hHHHHHHHhccccCcC-CCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRA-FYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~-~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+.... .+.+...+++++|++..   +.++++|++|||+|++.|+++++.+.        +|++|+.++
T Consensus        87 ~Ai~~q~~~~~~~~~~~~~~~~~~~lae~L~~~~p~~~~~~v~f~~sGsEA~e~AlklAr~~t--------~r~~ii~~~  158 (456)
T 4atq_A           87 AAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRLTPGDHAKRTVLFNSGAEAVENAVKVARLAT--------GRDAVVAFD  158 (456)
T ss_dssp             HHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEET
T ss_pred             HHHHHHHhhccCcccCccCcHHHHHHHHHHHHhCCCCCCcEEEEeCChHHHHHHHHHHHhhhh--------cCCeEEEEe
Confidence            6889999998886654 44667788999999987   35689999999999999999998764        348999999


Q ss_pred             cCCCCcccccccccCCcc-ccccCCCCCCCceeccCC-----------CHHHHHHHHH---h--cCCcEEEEEEccccCC
Q 017259           78 GCFHGRTLAAISMSCDNE-AIRGFGPLLPGHLKVDFG-----------DITALEKIFK---E--SGDQIAGFLFEPIQGE  140 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~-----------d~~~le~~l~---~--~~~~~~~vi~~~~~~~  140 (374)
                      ++|||.+..+.++++... ++..+.|...++..+|++           +.+.+++.++   +  .++++++|++||+++.
T Consensus       159 ~~yHG~t~~als~t~~~~~~~~~~~p~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~~~iAAvivEPiqg~  238 (456)
T 4atq_A          159 HAYHGRTNLTMALTAKAMPYKTNFGPFAPEVYRMPMSYPFREENPEITGAEAAKRAITMIEKQIGGDQVAAIIIEPIQGE  238 (456)
T ss_dssp             TCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCGGGCSSTTCCHHHHHHHHHHHHHHHTCGGGEEEEEECSSBTT
T ss_pred             cccCCccccccccccCccccccCCCCccccceecccccccccCCCcccHHHHHHHHHHHHHHhhcCCceEEEEeccccCC
Confidence            999999999888877643 455666766666666653           2333333332   1  3468999999999999


Q ss_pred             CCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC
Q 017259          141 AGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       141 ~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~  220 (374)
                      +|.+.++++++++|.++|++||+++|+||+++||+|+|..|+++++++.||+++++|+++||+ |+|.+++++++++.+.
T Consensus       239 gG~~~p~~~fl~~lr~lc~~~gillI~DEV~tG~GRtG~~~a~e~~gv~PDivt~gK~lggg~-P~~av~~~~~i~~~~~  317 (456)
T 4atq_A          239 GGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVVPDIITMAKGIAGGL-PLSAITGRADLLDAVH  317 (456)
T ss_dssp             TTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTSC
T ss_pred             CCccccchhhhHHHHHHHhhcCCceEecccccccCCccccccccccCCCCchhhhhhcccCcC-CceeeEecHHHHhccc
Confidence            999999999999999999999999999999999999999999999999999999999999998 9999999999999999


Q ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCC----CceeeEEEEeeeEEEEeccCCC-
Q 017259          221 PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP----NYVKEVRGRGLFNAVEFDKTAL-  295 (374)
Q Consensus       221 ~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~~~~~~g~~~~~~~~~~~~-  295 (374)
                      +..+++||+++++++++++++|+.++++++.++.++..+++.+.|+++..+++    +++.++++.|.++.+++.++.. 
T Consensus       318 ~~~~~~Tf~gnpla~aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~~~~~~~v~~VRG~Gl~~giel~~~~~~  397 (456)
T 4atq_A          318 PGGLGGTYGGNPVACAAALAAIDTMEQHDLNGRARHIEELALGKLRELAAELSAGGGSVVGDIRGRGAMLAIELVQPGSK  397 (456)
T ss_dssp             TTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCC-----CEEEEEEETTEEEEEEBCTTSC
T ss_pred             ccCCCCCCCCChHHHHhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhcccccCCceEEeeecceEEEEEEecCCCC
Confidence            98899999999999999999999999999999999999999999999987753    4678899999999999854321 


Q ss_pred             ---chhHHHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 ---PVSAYDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ---~~~~~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         ......+.+.|+++|+++.+++  ++.||+.|+++.|++++++++++|+++++
T Consensus       398 ~~~~~~~~~v~~~~~~~Gvl~~~~g~~~~~irl~PpL~it~~~id~~l~~l~~al~  453 (456)
T 4atq_A          398 EPNAELTKAVAAACLKEGVIILTCGTYGNVIRLLPPLVISDELLIDGLEVLAAAIK  453 (456)
T ss_dssp             CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CcCHHHHHHHHHHHHHCCCEEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence               2346689999999999998753  58999999999999999999999999987

>4e3q_A Pyruvate transaminase; aminotransferase, transferase; HET: PMP; 1.90A {Vibrio fluvialis} PDB: 4e3r_A* 3nui_A

Probab=100.00  E-value=2.5e-47  Score=363.25  Aligned_cols=341  Identities=27%  Similarity=0.420  Sum_probs=289.3

Q ss_pred             hHHHHHHHhccccCcC--CCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRA--FYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~--~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+++|++++.+....  .+++...+|+++|++..  +.++++|++|||+|++.|+++++.|+ ..+| .+++.+||.+.
T Consensus        90 ~Ai~~q~~~l~~~~~~~~~~~~~~~~lAe~L~~~~p~~~~~v~f~~sGsEA~e~AiKlAr~~~-~~~g-~~~r~~ii~~~  167 (473)
T 4e3q_A           90 DAAKAQYERFPGYHAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLH-AAEG-KPQKRKILTRW  167 (473)
T ss_dssp             HHHHHHHHHCCCCCCCTTEEEHHHHHHHHHHHHHSSCSSCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred             HHHHHHHHhcccccccccccCHHHHHHHHHHHhhCCCCccEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCcceEEEee
Confidence            6889999998765432  35677889999999987  56799999999999999999998876 5556 55678999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCCC------------------HHHHHHHHHhc-CCcEEEEEEcccc
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD------------------ITALEKIFKES-GDQIAGFLFEPIQ  138 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d------------------~~~le~~l~~~-~~~~~~vi~~~~~  138 (374)
                      ++|||.+..+.++++.+. +..+.+..+++..+++++                  .+++++.+.+. ++++++|++||++
T Consensus       168 ~~yHG~t~~a~s~tg~~~-~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~~iAavi~EPiq  246 (473)
T 4e3q_A          168 NAYHGVTAVSASMTGKPY-NSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIAGFFAEPVM  246 (473)
T ss_dssp             TCCCCSSHHHHHHSCCGG-GGGGTCSCTTEEEECCCCHHHHSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSB
T ss_pred             ceECCCcccccccccccc-ccccCCCCCcccccCCCcccccccccchhhHHHHHHHHHHHHHHHhhCCCceEEEEeCCcc
Confidence            999999999999888653 344444445555554431                  34566666653 4679999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLC  218 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~  218 (374)
                      +.+|.+.++++++++|.++|++||++||+||+++||||+|..|+++++++.||+++++|+++||++|+|.+++++++++.
T Consensus       247 g~gG~~~p~~~fl~~lr~lc~~~gilLI~DEV~tGfGRtG~~fa~e~~gv~PDi~t~~K~l~gG~~Pl~av~~~~~i~~~  326 (473)
T 4e3q_A          247 GAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKR  326 (473)
T ss_dssp             STTTSBCCCTTHHHHHHHHHHHTTCCEEEECTTTSSSTTSSSCHHHHTTCCCSEEEECGGGGTTSSCCEEEEECHHHHHH
T ss_pred             CCCCceeCCHHHHHHHHHHhcccceEEeccCccccCCcccchhHHHhcCCCCChHHhcccccCCCCCcccccccHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999984499999999998876


Q ss_pred             cC-------CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259          219 IQ-------PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       219 ~~-------~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  291 (374)
                      +.       ...+++||++|++++++++++|+.++++++.+++++..++++++|+++...  +.+.++++.|.++.+++.
T Consensus       327 ~~~~~~~~~~~~hg~T~~Gnpla~Aaala~L~~i~~~~l~~~~~~~g~~l~~~L~~l~~~--~~v~~vRG~Gl~~gielv  404 (473)
T 4e3q_A          327 LETAIEAIEEFPHGFTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAER--PNIGEYRGIGFMWALEAV  404 (473)
T ss_dssp             HHHHHHHHSCCCCCCTTTTCHHHHHHHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHTTS--TTEEEEEEETTEEEEEEC
T ss_pred             hccccccccccccCCCCCCCcchhhhhhhhhhhhccccHHHHHHHHHHHHHHHHHHHhcC--CCeeEEeecceEEEEEEe
Confidence            63       446899999999999999999999999999999999999999999998654  367889999999999984


Q ss_pred             cCCC--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          292 KTAL--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       292 ~~~~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+..        ......+.+.|+++|+++++. ++.+|++||+..|++++|+++++|+++++ ++
T Consensus       405 ~~~~~~~~~~~~~~~~~~~~~~~~~~Gll~~~~-g~~i~l~PPL~it~~eid~~~~~l~~al~-~v  468 (473)
T 4e3q_A          405 KDKASKTPFDGNLSVSERIANTCTDLGLICRPL-GQSVVLCPPFILTEAQMDEMFDKLEKALD-KV  468 (473)
T ss_dssp             SBTTTTBCCCGGGCHHHHHHHHHHHTTEECEEE-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             cCccccccccccHHHHHHHHHHHHHCCcEEEec-CCEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            3221        123677999999999999988 47899999999999999999999999987 54

>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST genomics, protein structure initiative; HET: PLP; 2.00A {Rhodobacter sphaeroides 2}

Probab=100.00  E-value=3.6e-47  Score=366.07  Aligned_cols=342  Identities=23%  Similarity=0.398  Sum_probs=295.4

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+.++ .++++...+++++|++.+  +.++++|++||++|++.|+++++.++ ..+| .+++++||++++
T Consensus        77 ~A~~~~l~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~Aik~a~~~~-~~~g-~~~~~~vi~~~~  154 (476)
T 3i5t_A           77 DAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPGDLNRIFFTTGGSTAVDSALRFSEFYN-NVLG-RPQKKRIIVRYD  154 (476)
T ss_dssp             HHHHHHHHHCCCCCTTTCBCHHHHHHHHHHHTTSSTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred             HHHHHHHHhccCcccCccCCHHHHHHHHHHHhcCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEcC
Confidence            688888888776555 577889999999999988  67899999999999999999998764 4455 445689999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCC----------------HHHHHHHHHhcC-CcEEEEEEccccCCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESG-DQIAGFLFEPIQGEA  141 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~~~~-~~~~~vi~~~~~~~~  141 (374)
                      +|||.+..+..+++.+.++..+.+...++..++++.                +++|++++++.+ +++++|+++|+++++
T Consensus       155 ~yHg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~ep~~~~~  234 (476)
T 3i5t_A          155 GYHGSTALTAACTGRTGNWPNFDIAQDRISFLSSPNPRHAGNRSQEAFLDDLVQEFEDRIESLGPDTIAAFLAEPILASG  234 (476)
T ss_dssp             CCCCSSHHHHHTCCCGGGCTTSCCCCTTEEEECCCCGGGCTTSCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBTTT
T ss_pred             CcCcCChhhccccCChhhccccCCCCCCcEEeCCCcccccCCCchHHHHHHHHHHHHHHHHhcCCCCEEEEEECCccCCC
Confidence            999999999999888888877777766666665332                789999998643 579999999999999


Q ss_pred             CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccc-cCCCCCcEEEecccccCC-ccchhhheeCHHHHhhc
Q 017259          142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCI  219 (374)
Q Consensus       142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~-~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~  219 (374)
                      |.+.++++++++|.++|++||++||+||+|+||+++|..+++. .+++.||++++||++++| + |+|++++++++++.+
T Consensus       235 G~~~~~~~~L~~l~~lc~~~gillI~DEv~~g~gr~G~~~~~~~~~~v~pdi~t~sK~l~~G~~-plg~v~~~~~i~~~~  313 (476)
T 3i5t_A          235 GVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVPDIITFAKGVTSGYV-PLGGLAISEAVLARI  313 (476)
T ss_dssp             TSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHTTCCCCSEEEECGGGGTTSS-CCEEEEECHHHHHTT
T ss_pred             CcccCCHHHHHHHHHHHHHcCCEEEEEecccCCccccCceeeecccCCCcchhhhhhhhcCCCc-CeEEEEECHHHHHHH
Confidence            9999999999999999999999999999999999999887888 889999999999999999 7 999999999999998


Q ss_pred             CCC-------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc
Q 017259          220 QPG-------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK  292 (374)
Q Consensus       220 ~~~-------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~  292 (374)
                      ...       .++.+|++++++++|+.++++.++++++.++++++.+++++.|+.+. .+ +.+..+++.|.++++++.+
T Consensus       314 ~~~~~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~-~~v~~v~~~G~~~~i~~~~  391 (476)
T 3i5t_A          314 SGENAKGSWFTNGYTYSNQPVACAAALANIELMEREGIVDQAREMADYFAAALASLR-DL-PGVAETRSVGLVGCVQCLL  391 (476)
T ss_dssp             SGGGCTTCEECCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTTT-TS-TTEEEEEEETTEEEEEECC
T ss_pred             hcCCcccccccccCCCCcCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cC-CCeEEEEecCceeEEEEec
Confidence            763       57789999999999999999998878899999999999999998653 44 3777889999999998865


Q ss_pred             CCC-c-------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          293 TAL-P-------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       293 ~~~-~-------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ... .       ....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++.
T Consensus       392 ~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~l~~t~e~i~~~l~~l~~~l~-~~~  455 (476)
T 3i5t_A          392 DPTRADGTAEDKAFTLKIDERCFELGLIVRPLG-DLCVISPPLIISRAQIDEMVAIMRQAIT-EVS  455 (476)
T ss_dssp             C-----CCHHHHHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred             CccccccccchhHHHHHHHHHHHHCCCEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence            321 0       025678999999999999975 9999999999999999999999999997 553

>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC, malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4 PDB: 3lg0_A 3ntj_A

Probab=100.00  E-value=4.2e-46  Score=354.93  Aligned_cols=340  Identities=46%  Similarity=0.823  Sum_probs=273.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.+..++.+...+++++|+++++.+++++++||++|++.++++++.+.+..+|.++++++|++++++||
T Consensus        88 ~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~a~~~~~~~~g~~~gr~~vi~~~~~yh  167 (433)
T 1z7d_A           88 NAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFS  167 (433)
T ss_dssp             HHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--
T ss_pred             HHHHHHHHhCCCccCCcCCHHHHHHHHHHHhhcCCCeEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEeCCcC
Confidence            57778887766544446677889999999999999999999999999999999987543334444455689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.++.++.|...++..++++|+++|+++++  .+++++++++|+++++|.+.++++++++|.++|++|
T Consensus       168 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~--~~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  245 (433)
T 1z7d_A          168 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY  245 (433)
T ss_dssp             ------------------------CEEEECTTCHHHHHHHHT--STTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             CcchhhhcccCCccccccCCCCCCCeEEeCCCCHHHHHHHhC--CCCEEEEEEECCCCCCCccCCCHHHHHHHHHHHHHc
Confidence            998877776665555555666666778888899999999995  257999999999998998888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |++||+||+|+||++.|..++.+.+++.||++|+||++++| + |+|++++++++++.+....+..+|++++++++++.+
T Consensus       246 g~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  324 (433)
T 1z7d_A          246 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHY-PISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE  324 (433)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHH
T ss_pred             CCEEEEecCccCCCcCCcchhhHhcCCCCCEEEECccccCCCC-CeEEEEECHHHHhhhccccccccCCCCHHHHHHHHH
Confidence            99999999999999888877777788899999999999999 7 999999999999988876678899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-CCchhHHHHHHHHHHCCeEeccCCCC
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-ALPVSAYDICLKMKERGILAKPTHDT  319 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~~~l~~~Gi~v~~~~~~  319 (374)
                      +++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.++.. .   +..++++.|+++||.+.+.+.+
T Consensus       325 al~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~---~~~~~~~~l~~~Gv~v~~~~~~  400 (433)
T 1z7d_A          325 ALNVLINEKLCENAEKLGGPFLENLKRELKDSK-IVRDVRGKGLLCAIEFKNELV---NVLDICLKLKENGLITRDVHDK  400 (433)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEEETTEEEEEECTTTC---CHHHHHHHHHHTTEECCEETTT
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeeeeEEEEEEccChh---HHHHHHHHHHHCCeEEecCCCC
Confidence            999887778999999999999999988754453 5556778899999988653 2   4778999999999999997788


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++|++|++..+++++++++++|+++++ ++
T Consensus       401 ~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~  429 (433)
T 1z7d_A          401 TIRLTPPLCITKEQLDECTEIIVKTVK-FF  429 (433)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             EEEEECCcCCCHHHHHHHHHHHHHHHH-HH
Confidence            999999999999999999999999987 54

>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase, transferase-transferase inhibitor complex; HET: PL8; 1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A* 3lv2_A*

Probab=100.00  E-value=1.5e-46  Score=359.91  Aligned_cols=339  Identities=27%  Similarity=0.435  Sum_probs=285.6

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.+.+ ..++.+...+|+++|++.+  +.++++|++||++|++.|+++++.++ ..+| .+++++|+++++
T Consensus        98 ~A~~~~~~~~~~~~~~~~~~~~~~~L~e~la~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~-~~~g-~~g~~~ii~~~~  175 (457)
T 3tfu_A           98 QALTTQLRVMNHVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYW-RGRG-LPGKRRLMTWRG  175 (457)
T ss_dssp             HHHHHHHHHCSCCCSSSEECHHHHHHHHHHHHHSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCceEEEEcC
Confidence            67888888877765 4567888999999999988  56799999999999999999998654 2233 345589999999


Q ss_pred             CCCCcccccccccC-CccccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChh
Q 017259           79 CFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDG  149 (374)
Q Consensus        79 ~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~  149 (374)
                      +|||.+..+..+++ .+.++..+.+...++..+++       +|+++|+++++++++++++++++| ++|++|.+.++++
T Consensus       176 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~d~~~le~~l~~~~~~~aavi~ep~~~~~~G~~~~~~~  255 (457)
T 3tfu_A          176 GYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDYDPAYSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPR  255 (457)
T ss_dssp             CCCCSSHHHHTTSCCC----------CCCCEEECCCCSSCCHHHHHHHHHHHHHHGGGEEEEEECSSEECTTTCEECCTH
T ss_pred             CcCCccHHhhcccCCcccccccccCCCCCceEecCCCcccCHHHHHHHHHHHHhCCCCEEEEEEeCCCcCCCCcccCCHH
Confidence            99999998888744 45566666666666666665       378999999987667899999999 9999999999999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcC---CC--CC
Q 017259          150 YLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQ---PG--EH  224 (374)
Q Consensus       150 ~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~---~~--~~  224 (374)
                      ++++|.++|++||++||+||+|+||+++|..++.+.+++.||++||||+++||++|+|++++++++++.+.   ..  .+
T Consensus       256 ~l~~l~~l~~~~gillI~DEv~~g~gr~G~~~a~~~~~~~pdiit~sK~l~gG~~~lG~v~~~~~i~~~~~~~~~~~~~~  335 (457)
T 3tfu_A          256 YLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISAGAAGALMH  335 (457)
T ss_dssp             HHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHHHHHSSSCSCCC
T ss_pred             HHHHHHHHHHHcCCEEEEEcCccCCccccchhHhHhcCCCceEEEEChhhhCCCcceEEEEEcHHHHHHhhccCCCceeE
Confidence            99999999999999999999999999999888888889999999999999988449999999999988883   33  57


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +.+|++++++++++.++++.+.++++.++++++.+++++.|+++. .+| .+...++.|.++++++++..   +..++.+
T Consensus       336 ~~t~~~n~~a~aaa~aaL~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~~-~v~~vr~~G~~~~i~l~~~~---~~~~~~~  410 (457)
T 3tfu_A          336 GPTFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTAR-ALP-AVTDVRVCGAIGVIECDRPV---DLAVATP  410 (457)
T ss_dssp             CCTTTTCHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHGGGG-GST-TEEEEEECSSCEEEEESSCC---CHHHHHH
T ss_pred             ecCCCcCHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHh-cCC-CeeeeecCCeEEEEEECCcc---cHHHHHH
Confidence            789999999999999999998878899999999999999998865 443 56678889999999987653   5789999


Q ss_pred             HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|+++||++++. ++++||+|++..+++++++++++|+++++ ++
T Consensus       411 ~l~~~Gv~v~~~-~~~lRi~p~~~~t~eei~~~l~~L~~~l~-~~  453 (457)
T 3tfu_A          411 AALDRGVWLRPF-RNLVYAMPPYICTPAEITQITSAMVEVAR-LV  453 (457)
T ss_dssp             HHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHCCeEEEec-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            999999999987 58999999999999999999999999998 65

>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens} SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A* 2can_A*

Probab=100.00  E-value=1.3e-45  Score=352.08  Aligned_cols=338  Identities=52%  Similarity=0.893  Sum_probs=290.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.+..++.+...+++++|+++++.+++++++||++|++.++++++.+.+..+|.++++++|++++++||
T Consensus        99 ~Ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~sGseA~~~al~~~~~~~~~~~g~~~g~~~vi~~~~~yh  178 (439)
T 2oat_A           99 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW  178 (439)
T ss_dssp             HHHHHHHTTCSCCCTTSEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCC
T ss_pred             HHHHHHHHhcCcccCccCCHHHHHHHHHHHHhcCCCEEEEeCCHHHHHHHHHHHHHHHhhhccCCCCCCCeEEEEcCCCC
Confidence            57778887766554446678899999999999999999999999999999999987543344444455689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+..+++.+.++.++.|...++..++++|+++|+++++.  +++++++++|+++++|.+.++++++++|.++|++|
T Consensus       179 g~~~~~~~~~g~~~~~~~~~p~~~~v~~~~~~d~~~le~~l~~--~~~~~vi~ep~~~~~G~~~~~~~~l~~l~~l~~~~  256 (439)
T 2oat_A          179 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH  256 (439)
T ss_dssp             CSSHHHHTTCCCHHHHTTSCSCCTTEEEECSSCHHHHHHHTTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             CCCHhHhhcCCChhcccCCCCCCCCeEEeCCCCHHHHHHHhCC--CCEEEEEEECCCCCCCCcCCCHHHHHHHHHHHHHc
Confidence            9988777776666666677777777888899999999999852  57999999999998998888999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |++||+||+|+||++.|..+.++.+++.||++|+||++++| + |+|++++++++++.+....++.+|++++++++++.+
T Consensus       257 gillI~DEv~~g~g~~g~~~~~~~~~~~~Di~t~sK~l~~G~~-~~G~v~~~~~~~~~l~~~~~~~t~~~~~~~~aaa~a  335 (439)
T 2oat_A          257 QVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLY-PVSAVLCDDDIMLTIKPGEHGSTYGGNPLGCRVAIA  335 (439)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSS-CCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHH
T ss_pred             CCEEEEeccccCCccCCcchhHHHhCCCCcEEEecccccCCCC-CeEEEEECHHHHhccCCCCcccCCCcCHHHHHHHHH
Confidence            99999999999999988877778888899999999999999 7 999999999999988877778899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+.++++.++++++++++++.|+++  .+ +.+...++.|.++++.++... +.+..++++.|+++||.+.+.+.++
T Consensus       336 al~~~~~~~~~~~~~~~~~~l~~~L~~l--~~-~~~~~~~~~g~~~~v~l~~~~-~~~~~~l~~~l~~~Gv~v~~~~~~~  411 (439)
T 2oat_A          336 ALEVLEEENLAENADKLGIILRNELMKL--PS-DVVTAVRGKGLLNAIVIKETK-DWDAWKVCLRLRDNGLLAKPTHGDI  411 (439)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHTTS--CT-TTEEEEEEETTEEEEEECCCS-SCCHHHHHHHHHHTTEECCBSSSSE
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHh--cC-CCcEEEEeeeeEEEEEEecCc-cHHHHHHHHHHHHCCeEEecCCCCE
Confidence            9998877788999999999999998776  23 355556788999999886531 0147789999999999999987899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+++++..+++++++++++|+++++
T Consensus       412 iRi~~~~~~t~e~i~~~l~~l~~~l~  437 (439)
T 2oat_A          412 IRFAPPLVIKEDELRESIEIINKTIL  437 (439)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECccCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987

>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal phosphate, PSI-2, protein structure initiative; 2.10A {Silicibacter pomeroyi}

Probab=100.00  E-value=3.5e-46  Score=358.68  Aligned_cols=340  Identities=23%  Similarity=0.424  Sum_probs=287.6

Q ss_pred             hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+  ....++++...+|+++|++.+  +.++++|++||++|++.|+++++.++ ..+| .+++++||+++
T Consensus        78 ~A~~~~~~~~~~~~~~~~~~~~~~~~lae~l~~~~~~~~~~v~~~~sGseA~~~aik~a~~~~-~~~g-~~~~~~ii~~~  155 (472)
T 3hmu_A           78 EVAARQMRELPYYNTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYW-QNKG-QPEKTVIISRK  155 (472)
T ss_dssp             HHHHHHHHHCSCCCSSSSEECHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred             HHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEc
Confidence            688888888763  223467888999999999988  56799999999999999999998764 3334 34568999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCCC-----------------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD-----------------ITALEKIFKESG-DQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d-----------------~~~le~~l~~~~-~~~~~vi~~~~~~  139 (374)
                      ++|||.+..+..+++.+.++..+. ...++..++.+.                 +++|++++++.+ +++++|++||+++
T Consensus       156 ~~yHg~t~~~~~~~~~~~~~~~~~-~~~~~~~v~~p~~~~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~aavi~epv~~  234 (472)
T 3hmu_A          156 NAYHGSTVASSALGGMAGMHAQSG-LIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEAILELGENRVAAFIAEPVQG  234 (472)
T ss_dssp             TCCCCSSHHHHHHSCCHHHHHTTC-CCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBS
T ss_pred             CcCCCccHHhhhccCChhhccccC-CCCCcEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccC
Confidence            999999999998888877766666 445555555322                 788999887543 5799999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC  218 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~  218 (374)
                      ++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++| + |+|++++++++++.
T Consensus       235 ~gG~~~~~~~~l~~l~~l~~~~gillI~DEv~~gfgr~G~~~a~~~~~v~pdi~t~sK~l~gg~~-plG~v~~~~~i~~~  313 (472)
T 3hmu_A          235 AGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGNWFGTQTMGIRPHIMTIAKGLSSGYA-PIGGSIVCDEVAHV  313 (472)
T ss_dssp             TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSS-CCEEEEEEHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEEccccCCcccCccchhHHhCCCCceeeechhhhcCCc-ceEEEEECHHHHHh
Confidence            999999999999999999999999999999999999999888888889999999999999987 7 99999999999988


Q ss_pred             cCC--CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          219 IQP--GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       219 ~~~--~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                      +..  ..++.+|++++++++|+.++++.++++++.++++ ++.+++++.|+.+. .+ +.+...++.|.++++++..+..
T Consensus       314 ~~~~~~~~~~t~~~np~a~aAa~aaL~~~~~~~~~~~~~~~~~~~l~~~L~~l~-~~-~~v~~vr~~G~~~~i~~~~~~~  391 (472)
T 3hmu_A          314 IGKDEFNHGYTYSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALT-DH-PLVGEAKIVGMMASIALTPNKA  391 (472)
T ss_dssp             HTTSCBCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHTHHHHHHHHHHGGG-GS-TTEEEEEEETTEEEEEECSCGG
T ss_pred             cccCCccccCCCCCCHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHh-cC-CCeEEEEecCceEEEEEecCcc
Confidence            842  3567899999999999999999988788999999 99999999997764 35 3777889999999998854310


Q ss_pred             ---------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 ---------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ---------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                               .....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++
T Consensus       392 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~p~~~~t~e~i~~~l~~l~~~l~-~~  452 (472)
T 3hmu_A          392 SRAKFASEPGTIGYICRERCFANNLIMRHVG-DRMIISPPLVITPAEIDEMFVRIRKSLD-EA  452 (472)
T ss_dssp             GTCCBSSCTTHHHHHHHHHHHHTTBCCEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             ccccccchhHHHHHHHHHHHHHCCcEEEecC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence                     0126789999999999999986 9999999999999999999999999887 44

>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural genomics, center for structural genomics O infectious diseases; 1.80A {Campylobacter jejuni subsp}

Probab=100.00  E-value=2.5e-45  Score=345.70  Aligned_cols=334  Identities=31%  Similarity=0.571  Sum_probs=296.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+.++.++.+.+.+++++|++.++.+++++++||++|++.++++++.+. ..+|  .++++|++++++||
T Consensus        59 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g--~~~~~vi~~~~~yh  135 (395)
T 3nx3_A           59 AKIKAQVDKLLHTSNLYYNENIAAAAKNLAKASALERVFFTNSGTESIEGAMKTARKYA-FNKG--VKGGQFIAFKHSFH  135 (395)
T ss_dssp             HHHHHHHTTCSCCCTTSBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHH-HHTT--CTTCEEEEETTCCC
T ss_pred             HHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hccC--CCCCEEEEEcCCcC
Confidence            56777777777666667788999999999999999999999999999999999987542 1122  22389999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |....+..+++.+.+...+.+...++..++++|+++|+++++   +++++++++|+++++|.+.++++++++|.++|++|
T Consensus       136 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~~G~~~~~~~~l~~l~~l~~~~  212 (395)
T 3nx3_A          136 GRTLGALSLTANEKYQKPFKPLISGVKFAKYNDISSVEKLVN---EKTCAIILESVQGEGGINPANKDFYKALRKLCDEK  212 (395)
T ss_dssp             CSSHHHHTTCCCHHHHGGGCSCCSCEEEECTTCHHHHHTTCC---TTEEEEEEESEECTTSCEECCHHHHHHHHHHHHHH
T ss_pred             CCCHHHHhhcCCcccccccCCCCCCcEEeCCCCHHHHHHhcc---CCeEEEEEeCccCCCCcccCCHHHHHHHHHHHHHc
Confidence            999998888888888878888778888899999999999886   57999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH-HhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV-MLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |++||+||+|+||++.|..+....++..+|++++||++++|+ |+|++++++++ .+.+.+..++.+++.++++++++.+
T Consensus       213 ~~~li~Dev~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~a  291 (395)
T 3nx3_A          213 DILLIADEIQCGMGRSGKFFAYEHAQILPDIMTSAKALGCGL-SVGAFVINQKVASNSLEAGDHGSTYGGNPLVCAGVNA  291 (395)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGTTTS-CCEEEEECHHHHHHHSCTTCCSSCBSCCHHHHHHHHH
T ss_pred             CCEEEEEecccCCCcCCcchhHHhcCCCCCEEEecccccCCC-ceEEEEEchhhhhhhcCCcccCCCCCCCHHHHHHHHH
Confidence            999999999999998888777788888999999999999998 99999999998 8888877778899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+++..   ...++.+.|+++||.+++++.++
T Consensus       292 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~~~~~l~~~Gi~v~~~~~~~  367 (395)
T 3nx3_A          292 VFEIFKEEKILENVNKLTPYLEQSLDELINEFD-FCKKRKGLGFMQGLSLDKSV---KVAKVIQKCQENALLLISCGEND  367 (395)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTE
T ss_pred             HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEeEEEEEEEEeCCcc---hHHHHHHHHHHCCCEEecCCCCE
Confidence            999887778999999999999999998877664 66677888999999987643   57889999999999999988899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||+|++..+++++++++++|+++++
T Consensus       368 iRi~~~~~~t~e~i~~~l~~l~~~l~  393 (395)
T 3nx3_A          368 LRFLPPLILQKEHIDEMSEKLRKALK  393 (395)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999987

>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent transferase-like fold, ST genomics, joint center for structural genomics, JCSG; HET: MSE LLP PLP; 1.55A {Mesorhizobium loti} PDB: 3fcr_A*

Probab=100.00  E-value=3.3e-45  Score=351.54  Aligned_cols=343  Identities=24%  Similarity=0.398  Sum_probs=290.2

Q ss_pred             hHHHHHHHhcccc--CcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+.  ...++.+...+++++|++.+  +.+++++++||++|++.|+++++.++ ..+| .+++++|++++
T Consensus        74 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~gGseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~  151 (460)
T 3gju_A           74 DAIATQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYN-NVLG-RPEKKKIISRW  151 (460)
T ss_dssp             HHHHHHHHHHSCCCCCTTCCCHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred             HHHHHHHHhccccccccccCCHHHHHHHHHHHhhCCCCcCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEC
Confidence            6778888876532  23466788999999999987  66799999999999999999998654 2333 34459999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccC------CC------------HHHHHHHHHhcC-CcEEEEEEcccc
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF------GD------------ITALEKIFKESG-DQIAGFLFEPIQ  138 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~d------------~~~le~~l~~~~-~~~~~vi~~~~~  138 (374)
                      ++|||.+..+..+++.+.++..+.+...++..++.      +|            +++|++++++.. +++++++++|++
T Consensus       152 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~~~~~~le~~i~~~~~~~~aaii~ep~~  231 (460)
T 3gju_A          152 RGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSMSEEQFSQHCADKLEEMILAEGPETIAAFIGEPIL  231 (460)
T ss_dssp             TCCCCSSHHHHHHCCCGGGTTTTTCSCTTEEEECCCCGGGCSCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSB
T ss_pred             CCcCCCCHHHhhccCCcccccccCCCCCCCEEeCCCccccCCccccChhHHHHHHHHHHHHHHHhcCCCCEEEEEECCcc
Confidence            99999999999888887777777776666655552      22            688999887533 579999999999


Q ss_pred             CCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHh
Q 017259          139 GEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVML  217 (374)
Q Consensus       139 ~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~  217 (374)
                      +++|.+.++++++++|.++|++||++||+||+|+||++.|..+....+++.||+++|||++++| + |+|++++++++++
T Consensus       232 ~~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~g~~~~~~~~~~~pdi~t~sK~l~gG~~-~lg~v~~~~~i~~  310 (460)
T 3gju_A          232 GTGGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYA-PLSGVIVADRVWQ  310 (460)
T ss_dssp             STTTSBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSCHHHHHTCCCSEEEECGGGTTTSS-CCEEEEEEHHHHH
T ss_pred             CCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeeeehhhcCCCC-CeEEEEECHHHHH
Confidence            9999999999999999999999999999999999999999877778889999999999999988 6 9999999999988


Q ss_pred             hc-------CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          218 CI-------QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       218 ~~-------~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      .+       ....++.+|++++++++++.++++.++++++.++++++.+++++.|.+....+| .+...++.|.++++++
T Consensus       311 ~~~~~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~g~~~~~~~  389 (460)
T 3gju_A          311 VLVQGSDKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHK-NVGEVRGDGMLAAVEF  389 (460)
T ss_dssp             HHHHHHHHHCSCSCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTST-TEEEEEEETTEEEEEE
T ss_pred             HHhcccccccccccCCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEeeeeEEEEEEE
Confidence            88       344678899999999999999999987788999999999999999988776664 7778889999999988


Q ss_pred             ccCCC--------chhHHHHHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          291 DKTAL--------PVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       291 ~~~~~--------~~~~~~~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .....        .....++++.|+++||++++.+ .+++||+|++..+++++++++++|+++++ ++
T Consensus       390 ~~~~~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~  456 (460)
T 3gju_A          390 VADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPLCLTREQADIVVSKTADAVK-SV  456 (460)
T ss_dssp             CSBTTTTBCCCGGGCHHHHHHHHHHHTTEECEECSSSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             ccCccccccccchHHHHHHHHHHHHHCCeEEecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            54321        0126689999999999999875 48999999999999999999999999998 54

>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, biotin biosynthesis, pyridoxal phosphate, adenosyl-L-methionine; HET: PLP; 1.90A {Bacillus subtilis} SCOP: c.67.1.0 PDB: 3drd_A 3du4_A*

Probab=100.00  E-value=1.5e-45  Score=352.79  Aligned_cols=344  Identities=28%  Similarity=0.504  Sum_probs=268.1

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.++++++.++. ..++.+...+++++|++.+  +.+++++++||++|++.|+++++.++ ..+| .+++++|+++++
T Consensus        67 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~sGseA~~~al~~~~~~~-~~~G-~~~~~~vi~~~~  144 (448)
T 3dod_A           67 DAIKKQLGKIAHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYW-KNIG-KPEKQKFIAMKN  144 (448)
T ss_dssp             HHHHHHHTTCSCCCCSSSEEHHHHHHHHHHHHHSCTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEEC-
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH-HhhC-CCCCCEEEEECC
Confidence            57778887765543 3466788899999999988  56799999999999999999998653 2233 223599999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCC----------------HHHHHHHHHhcCCcEEEEEEcccc-CCC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----------------ITALEKIFKESGDQIAGFLFEPIQ-GEA  141 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----------------~~~le~~l~~~~~~~~~vi~~~~~-~~~  141 (374)
                      +|||.+..+..+++.+.++..+.|...++..++.++                +++|+++++++++++++|+++|++ +++
T Consensus       145 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~a~vi~ep~~~~~~  224 (448)
T 3dod_A          145 GYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCLRELAQLLEEHHEEIAALSIESMVQGAS  224 (448)
T ss_dssp             ----------------------------CEEECCCCCTTSSSCCHHHHHHHHHHHHHHHHHHHGGGEEEEEEESSEESTT
T ss_pred             CCCCccHHHHHhcCCccccccccCCCCCceEeCCCccccCCccchhhhhHHHHHHHHHHHHhCCCCEEEEEEeCcccCCC
Confidence            999999998888887777777777666666666654                789999998655689999999998 999


Q ss_pred             CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259          142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~  221 (374)
                      |.+.++++++++|.++|++||++||+||+|+||++.|..++...+++.||+++|||++++|++|+|++++++++++.+..
T Consensus       225 G~~~~~~~~l~~l~~l~~~~~~~lI~DEv~~g~g~~g~~~a~~~~~~~~di~t~sK~l~~G~~~ig~v~~~~~~~~~~~~  304 (448)
T 3dod_A          225 GMIVMPEGYLAGVRELCTTYDVLMIVDEVATGFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYD  304 (448)
T ss_dssp             TCEECCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEEEHHHHHTTCS
T ss_pred             CeecCCHHHHHHHHHHHHHhCCEEEEeccccCCCcccchhhhhhcCCCCCEEEecccccCCcCceEEEEECHHHHHHhhh
Confidence            99999999999999999999999999999999999998878888899999999999999993499999999999999876


Q ss_pred             -------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          222 -------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       222 -------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                             ..++.+|++++++++++.++++.++++++.++++++.+++++.|++ ...+ +.+...++.|.++++.+....
T Consensus       305 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~-l~~~-~~~~~~~~~g~~~~~~~~~~~  382 (448)
T 3dod_A          305 DYENLKTFFHGHSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQD-LHAL-PHVGDIRQLGFMCGAELVRSK  382 (448)
T ss_dssp             CGGGCCCCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHH-HTTS-TTEEEEEEETTEEEEEECSBT
T ss_pred             ccccCCcccccCCCCcCHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHH-HhcC-CCeEEEEeeeEEEEEEEccCc
Confidence                   5677899999999999999999887788999999999999999998 5555 367778889999999886532


Q ss_pred             Cc--------hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          295 LP--------VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       295 ~~--------~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      ..        ....++++.|+++||.+.+.+ +++||+|++..+++++++++++|+++++ ++..
T Consensus       383 ~~~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~  445 (448)
T 3dod_A          383 ETKEPYPADRRIGYKVSLKMRELGMLTRPLG-DVIAFLPPLASTAEELSEMVAIMKQAIH-EVTS  445 (448)
T ss_dssp             TTTBCCCGGGCHHHHHHHHHHHTTEECCEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HHHT
T ss_pred             ccccccchhhHHHHHHHHHHHHCCcEEeccC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence            10        014789999999999999984 8999999999999999999999999998 6543

>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase fold type I; HET: TA8; 1.35A {Chromobacterium violaceum} PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*

Probab=100.00  E-value=4.5e-45  Score=350.58  Aligned_cols=342  Identities=25%  Similarity=0.428  Sum_probs=286.3

Q ss_pred             hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+  ....++.+...+++++|++.+  +.+++++++||++|++.|+++++.++ ..+| .+++++|++++
T Consensus        73 ~A~~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~~~~ggseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~  150 (459)
T 4a6r_A           73 EAARRQMEELPFYNTFFKTTHPAVVELSSLLAEVTPAGFDRVFYTNSGSESVDTMIRMVRRYW-DVQG-KPEKKTLIGRW  150 (459)
T ss_dssp             HHHHHHHHHCSCCCTTSSSCCHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEET
T ss_pred             HHHHHHHHhccccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEEC
Confidence            678888887652  223477888999999999987  57899999999999999999998754 3334 34559999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCC---------C--------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG---------D--------ITALEKIFKESG-DQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------d--------~~~le~~l~~~~-~~~~~vi~~~~~~  139 (374)
                      ++|||.+..+..+++.+.++..+.+...++..++.+         |        +++|++++++.+ +++++++++|+++
T Consensus       151 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~d~~~~~~~~~~~le~~i~~~~~~~~~~vi~ep~~~  230 (459)
T 4a6r_A          151 NGYHGSTIGGASLGGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAFVGEPIQG  230 (459)
T ss_dssp             TCCCCSSHHHHHHSCCTTTC---CCSCSSEEEECCCCHHHHCTTCCHHHHHHHHHHHHHHHHHHHCGGGEEEEEECSSBT
T ss_pred             CCcCCccHHHHhhcCChhhccccCCCCCCCEEeCCCccccCCcccCHHHHHHHHHHHHHHHHHHcCCCCEEEEEECCccC
Confidence            999999999998888887777777666666666533         2        788999887643 5799999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC  218 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~  218 (374)
                      ++|.+.++++++++|.++|++||++||+||+|+||++.|..+....+++.||+++|||++++| + |+|++++++++++.
T Consensus       231 ~~G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~gr~G~~~~~~~~~~~pdi~t~sK~l~gg~~-~lg~v~~~~~i~~~  309 (459)
T 4a6r_A          231 AGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPDLFTAAKGLSSGYL-PIGAVFVGKRVAEG  309 (459)
T ss_dssp             TTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEECHHHHHH
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEeccccCCCcccccchHhhcCCCCCeeehhhhhcCCCC-CccceeeCHHHHHH
Confidence            999999999999999999999999999999999999999877778889999999999999987 7 99999999999888


Q ss_pred             cC---CCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHH-HHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          219 IQ---PGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSA-HLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       219 ~~---~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      +.   ...++.+|++++++++++.++++.++++++.++++ ++.+++++.|.+....+ +.+...++.|.++++++....
T Consensus       310 ~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~  388 (459)
T 4a6r_A          310 LIAGGDFNHGFTYSGHPVCAAVAHANVAALRDEGIVQRVKDDIGPYMQKRWRETFSRF-EHVDDVRGVGMVQAFTLVKNK  388 (459)
T ss_dssp             HHHHCTTHHHHHHCSCHHHHHHHHHHHHHHHHTCHHHHHHHTHHHHHHHHHHHHHTTC-TTEEEEEEETTEEEEEECSBT
T ss_pred             hhcCCCcccCCCCCCCHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHhcC-CCeEEEEEEEEEEEEEEecCc
Confidence            86   44566789999999999999999887788999999 99999999994444445 367788899999999885431


Q ss_pred             C--------chhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 L--------PVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~--------~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .        .....++++.|+++||++++.+ +++||+|++..+++++++++++|+++++ ++
T Consensus       389 ~~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~  449 (459)
T 4a6r_A          389 AKRELFPDFGEIGTLCRDIFFRNNLIMRACG-DHIVSAPPLVMTRAEVDEMLAVAERCLE-EF  449 (459)
T ss_dssp             TTTBCCSSTTHHHHHHHHHHHHTTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             cccccccchHHHHHHHHHHHHHCCeEEecCC-CEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            0        1126789999999999999985 8999999999999999999999999987 54

>4ao9_A Beta-phenylalanine aminotransferase; HET: PLP; 1.50A {Variovorax paradoxus} PDB: 4aoa_A*

Probab=100.00  E-value=1.6e-44  Score=341.20  Aligned_cols=322  Identities=21%  Similarity=0.267  Sum_probs=277.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+.+  .+++...+++++|++.. +.++++|++||++|++.|+++++.++        +|++|+.++++|
T Consensus       110 ~Av~~q~~~~~~~~--~~~~~~~~lae~l~~~~p~~~~v~f~~SGsEA~e~AiklAr~~t--------gr~~ii~~~~~y  179 (454)
T 4ao9_A          110 DAVIEAMQGGINLT--GHNLLEGRLARLICERFPQIEQLRFTNSGTEANLMALTAALHFT--------GRRKIVVFSGGY  179 (454)
T ss_dssp             HHHHHHHHTCSCCC--SEESSHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEETTCB
T ss_pred             HHHHHHHhcCCCcc--CCcHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHhcc--------cCCeEEEEeCCc
Confidence            68888888876654  34677888999999977 78999999999999999999998764        348999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      ||.+.......+...       ...+...+|++|++.+++.++++++++++|++||+++++|.+.++++++++|.++|++
T Consensus       180 HG~t~~~~~~~~~~~-------~~~~~~~~p~nd~~~l~~~l~~~~~~iAavIvEPv~g~~G~~~p~~~fL~~lr~lc~~  252 (454)
T 4ao9_A          180 HGGVLGFGARPSPTT-------VPFDFLVLPYNDAQTARAQIERHGPEIAVVLVEPMQGASGCIPGQPDFLQALRESATQ  252 (454)
T ss_dssp             CSTTCBBSSSBCTTS-------CCSEEEEECTTCHHHHHHHHHHTGGGEEEEEECSEESTTTCEECCHHHHHHHHHHHHH
T ss_pred             CCccccccccccCcc-------CCCCcccCCCchHHHHHHHHhhcCCceEEEEeccccCCCCccCCchhhHHHHHHHHhh
Confidence            998877655443221       2234667889999999999998888999999999999999999999999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC----CCCCCCCCCHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASA  236 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~  236 (374)
                      ||++||+||+++  ||.|..++.+.+++.||+++++|+++||+ |+|++.+++++++.+.+.    .++.||++|+++++
T Consensus       253 ~g~lLI~DEV~t--GR~G~~~a~e~~gv~PDi~t~gK~lggG~-Piga~~~~~ei~~~~~~~~~~~~h~~T~~gnPla~A  329 (454)
T 4ao9_A          253 VGALLVFDEVMT--SRLAPHGLANKLGIRSDLTTLGKYIGGGM-SFGAFGGRADVMALFDPRTGPLAHSGTFNNNVMTMA  329 (454)
T ss_dssp             HTCEEEEECTTG--GGGSTTCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHGGGCTTTCSCCCCCTTTTCHHHHH
T ss_pred             cCCEEEEECCCc--CCCccccchhccCCCCcEEEeccccCCCC-cceeeeeHHHHHHHHhhccCCccccCCCCCCHHHHH
Confidence            999999999999  48899889899999999999999999998 999999999999988653    47789999999999


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHHHHHHHH
Q 017259          237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICLKM  306 (374)
Q Consensus       237 aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~~l  306 (374)
                      |++++|+.++++++.++++++.++++++|+++..++ +++..+++.|+++.+.+.+...          ......+...|
T Consensus       330 Aala~L~~l~~~~~~~~~~~~g~~l~~~L~~l~~~~-~~~~~vrg~G~m~gi~f~~~~~~~~~~~~~~d~~~~~~~~~~l  408 (454)
T 4ao9_A          330 AGYAGLTKLFTPEAAGALAERGEALRARLNALCANE-GVAMQFTGIGSLMNAHFVQGDVRSSEDLAAVDGRLRQLLFFHL  408 (454)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHHHHH-TBSCEEEEETTEEEEESCCSCCCSGGGGTTCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHhhC-CCCEEEeeeceEEEEEEecCCCCCHHHHHhhhHHHHHHHHHHH
Confidence            999999999888999999999999999999998776 4888899999999998743221          12345688889


Q ss_pred             HHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +++||++.|.+    ++.++..+|++|+|+++++|++++. +.
T Consensus       409 l~~Gv~~~p~~----~~~~s~~~T~~dId~~l~al~~~l~-~~  446 (454)
T 4ao9_A          409 LNEDIYSSPRG----FVVLSLPLTDADIDRYVAAIGSFIG-GH  446 (454)
T ss_dssp             HHTTEECCTTC----EEECCTTCCHHHHHHHHHHHHHHHH-HS
T ss_pred             HHCCEEEcCCC----CEEEeCCCCHHHHHHHHHHHHHHHH-hc
Confidence            99999998864    3445577999999999999999998 65

>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle structural genomics center for infectious disease; HET: LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A

Probab=100.00  E-value=2.7e-44  Score=344.21  Aligned_cols=335  Identities=31%  Similarity=0.551  Sum_probs=286.0

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.++.. .++.+.+.+++++|++.++   .++++|++||++|++.|+++++.+.    |    +++|++++
T Consensus        84 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~Alk~a~~~~----g----~~~ii~~~  155 (451)
T 3oks_A           84 EAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIARSHT----H----KPAVVAFD  155 (451)
T ss_dssp             HHHHHHHTTCSCCTTTTSCCHHHHHHHHHHHHHSSCCSSEEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEET
T ss_pred             HHHHHHHHhcccccCCccCCHHHHHHHHHHHHhCCcCCCCEEEEeCcHHHHHHHHHHHHHHhc----C----CCeEEEEc
Confidence            678888887766543 4778889999999999873   5689999999999999999997531    2    38999999


Q ss_pred             cCCCCcccccccccCCc-cccccCCCCCCCceeccCC------------------CHHHHHHHHHh--cCCcEEEEEEcc
Q 017259           78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG------------------DITALEKIFKE--SGDQIAGFLFEP  136 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~------------------d~~~le~~l~~--~~~~~~~vi~~~  136 (374)
                      ++|||.+..+..+++.. .++..+.+...++..++++                  +++.+++.+++  .++++++|+++|
T Consensus       156 ~~yhG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~~~~aavi~ep  235 (451)
T 3oks_A          156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRAITVIDKQIGADNLAAVVIEP  235 (451)
T ss_dssp             TCCCCSSHHHHHHCCCCTTTTTTCCSCCSSEEEECCCCHHHHGGGCTTTTTCHHHHHHHHHHHHHHHTCGGGEEEEEECS
T ss_pred             CCcCCccHHHHHhcCCCcccccCCCCCCCCcEEeCCCccccccccccccchhhHHHHHHHHHHHHhhcCCCCEEEEEEcC
Confidence            99999999998887764 6666777766677777765                  23444455553  235799999999


Q ss_pred             ccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHH
Q 017259          137 IQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM  216 (374)
Q Consensus       137 ~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~  216 (374)
                      +++++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++|+ |+||++++++++
T Consensus       236 ~~~~gG~~~~~~~~l~~l~~l~~~~g~~lI~DEv~~g~g~~g~~~~~~~~~~~pdi~t~sK~l~~G~-~iG~v~~~~~~~  314 (451)
T 3oks_A          236 IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFACEHEGIDPDLIVTAKGIAGGL-PLSAVTGRAEIM  314 (451)
T ss_dssp             SBTTTTCBCCCTTHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-SCEEEEEEHHHH
T ss_pred             CcCCCCccCCCHHHHHHHHHHHHHcCCEEEEEecccCCCccccchhhhhcCCCCCeeeehhhhhCCc-ceEEEEECHHHH
Confidence            9999999999999999999999999999999999999999998888888899999999999999998 999999999999


Q ss_pred             hhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC---
Q 017259          217 LCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT---  293 (374)
Q Consensus       217 ~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~---  293 (374)
                      +.+....+..+|++++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+.+.   
T Consensus       315 ~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~G~~~~~~~~~~~~~  393 (451)
T 3oks_A          315 DSPHVSGLGGTYGGNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDD-RIGDVRGRGAMIAMELVKAGTT  393 (451)
T ss_dssp             TCSCTTSBCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEBSTTSC
T ss_pred             hhhcCCCcCCCCCCCHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEEeeEEEEEEEecCccC
Confidence            999887788999999999999999999887778999999999999999999877764 6777888999999988431   


Q ss_pred             -CCchhHHHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          294 -ALPVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       294 -~~~~~~~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .......++++.|+++||++.+++.  +++||+|++..+++++++++++|+++++
T Consensus       394 ~~~~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  449 (451)
T 3oks_A          394 EPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLEEVLR  449 (451)
T ss_dssp             CBCHHHHHHHHHHHHHTTEECEEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHhCCcEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHh
Confidence             0122467899999999999998653  8999999999999999999999999987

>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; aminotransferase, csgid; 2.05A {Bacillus anthracis}

Probab=100.00  E-value=3.9e-44  Score=343.51  Aligned_cols=340  Identities=29%  Similarity=0.504  Sum_probs=285.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+....++.+...+++++|++.++.+ .++|++||++|++.|+++++.++ ...| .+++++|++++++|
T Consensus        72 ~A~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~v~~~~ggseA~~~al~~~~~~~-~~~g-~~~~~~vi~~~~~y  149 (452)
T 3n5m_A           72 EAAYKQLQTLSYFPMSQSHEPAIKLAEKLNEWLGGEYVIFFSNSGSEANETAFKIARQYY-AQKG-EPHRYKFMSRYRGY  149 (452)
T ss_dssp             HHHHHHHTTCCCCCTTSEEHHHHHHHHHHHHHHTSCEEEEEESSHHHHHHHHHHHHHHHH-HTTT-CTTCCEEEEETTCC
T ss_pred             HHHHHHHHhcCCcccccCCHHHHHHHHHHHHhCCCCceEEEeCchHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECCCc
Confidence            577788877766444577888999999999987432 39999999999999999998653 1122 22349999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccC--------CC---------HHHHHHHHH-hcCCcEEEEEEccc-cCCC
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF--------GD---------ITALEKIFK-ESGDQIAGFLFEPI-QGEA  141 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~d---------~~~le~~l~-~~~~~~~~vi~~~~-~~~~  141 (374)
                      ||.+..+..+++.+.+...+.+...++..++.        +|         +++|+++++ .+++++++++++|+ +| +
T Consensus       150 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~ep~~~n-~  228 (452)
T 3n5m_A          150 HGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVKEVDRVMTWELSETIAAFIMEPIITG-G  228 (452)
T ss_dssp             CCSSHHHHHSCCCGGGTTTTCCCCSCEEEECCCCTTTSTTTTTSCGGGCHHHHHHHHHHHHHCGGGEEEEEECSSBTT-T
T ss_pred             CCCCHHHHhcCCchhhccccCCCCCCCeEeCCCccccCccCCchhhHHHHHHHHHHHHHHhcCCCCEEEEEEccccCC-C
Confidence            99999888888887777666666555544443        44         899999998 34468999999999 88 9


Q ss_pred             CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcC
Q 017259          142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQ  220 (374)
Q Consensus       142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~  220 (374)
                      |.+.++++++++|.++|++||++||+||+|+||++.|..++...+++.||+++|||++++| + |+|++++++++++.+.
T Consensus       229 G~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l~~G~~-~ig~~~~~~~i~~~~~  307 (452)
T 3n5m_A          229 GILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTGKAFGFMNYDVKPDIITMAKGITSAYL-PLSATAVKREIYEAFK  307 (452)
T ss_dssp             TCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHGGGC
T ss_pred             CeeeCCHHHHHHHHHHHHHcCCEEEEecchhCCCcccccchhhhcCCCCCEEeecccccCCCc-ceEEEEECHHHHHHHh
Confidence            9999999999999999999999999999999999999888888889999999999999999 7 9999999999999885


Q ss_pred             C------CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          221 P------GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       221 ~------~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      .      ..++.++++++++++++.++++.++++++.++++++.+++++.|+++...+| .+...++.|.++++++....
T Consensus       308 ~~~~~~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~  386 (452)
T 3n5m_A          308 GKGEYEFFRHINTFGGNPAACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHP-LVGDIRGKGLLVGIELVNDK  386 (452)
T ss_dssp             SSSTTCSCCCCCSSTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHTTCT-TEEEEEESSSCEEEEEEEET
T ss_pred             hccCCCCccccCCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEEEEEEEEEEEecCC
Confidence            3      2367889999999999999999887788999999999999999999876664 67778889999998874321


Q ss_pred             C------chhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 L------PVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~------~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .      .....++++.|+++||++++..      .+++||+|++..+++++++++++|+++++
T Consensus       387 ~~~~~~~~~~~~~~~~~l~~~Gv~~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  450 (452)
T 3n5m_A          387 ETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGTLKTAME  450 (452)
T ss_dssp             TTTEECCHHHHHHHHHHHHHTTEECEECTTSSTTCCCEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCCHHHHHHHHHHHHHCCcEEeecCcccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            0      0124579999999999999875      68999999999999999999999999987

>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics, niaid, national institute of allergy AN infectious diseases; HET: LLP; 1.80A {Mycobacterium abscessus}

Probab=100.00  E-value=3.2e-44  Score=343.83  Aligned_cols=335  Identities=32%  Similarity=0.535  Sum_probs=285.1

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.++.. .++.+...+++++|++.++   .++++|++||++|++.|+++++.+    .|    +++|++++
T Consensus        87 ~A~~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~~v~~~~sGseA~~~alk~a~~~----~g----~~~ii~~~  158 (453)
T 4ffc_A           87 AAIADQATHFTHTCFMVTPYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVARLA----TG----RPAVVAFD  158 (453)
T ss_dssp             HHHHHHHHHCSCCTTTTSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH----HC----CCEEEEET
T ss_pred             HHHHHHHHhccccccCcCCCHHHHHHHHHHHHhCCCCCCcEEEEeCcHHHHHHHHHHHHHHh----cC----CCEEEEEc
Confidence            678888888766543 4778889999999999874   578999999999999999998743    12    38999999


Q ss_pred             cCCCCcccccccccCCc-cccccCCCCCCCceeccCC----C-------------HHHHHHHHHhcCCcEEEEEEccccC
Q 017259           78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG----D-------------ITALEKIFKESGDQIAGFLFEPIQG  139 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~----d-------------~~~le~~l~~~~~~~~~vi~~~~~~  139 (374)
                      ++|||.+..+..+++.. .++..+.+...++..++++    |             ++.|++.+.  ++.+++|+++|+++
T Consensus       159 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~l~~~i~--~~~~aavi~ep~~~  236 (453)
T 4ffc_A          159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQIG--AQSLAAIIIEPIQG  236 (453)
T ss_dssp             TCCCCSSHHHHHHCCCCTTTTTTSCSCCSSEEEECCCCTTTSCTTCCHHHHHHHHHHHHHHHTC--GGGEEEEEECSSBT
T ss_pred             CccCCcchHHHhhcCCCcccccCCCCCCCCcEEeCCCccccCccccchHHHHHHHHHHHHHhcC--CCCEEEEEEcCCCC
Confidence            99999999998887764 5666676666666666654    3             233443332  35799999999999


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhc
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCI  219 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~  219 (374)
                      ++|.+.++++++++|.++|++||++||+||+|+||++.|..++.+.+++.||+++|||++++|+ |+||+++++++++.+
T Consensus       237 ~gG~~~~~~~~l~~l~~l~~~~~~llI~DEv~~g~g~~g~~~a~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~i~~~~  315 (453)
T 4ffc_A          237 EGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVPDIVTMAKGIAGGM-PLSAVTGRAELMDAV  315 (453)
T ss_dssp             TTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHTTS
T ss_pred             CCCcccCCHHHHHHHHHHHHHcCCEEEEecCccCCCcccccchhhhcCCCcchHhhhhhhcCCc-CeEEEEECHHHHhhh
Confidence            9999999999999999999999999999999999999998778888899999999999999998 999999999999999


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----C
Q 017259          220 QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----L  295 (374)
Q Consensus       220 ~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----~  295 (374)
                      .+..++.+|++++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+....    .
T Consensus       316 ~~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~  394 (453)
T 4ffc_A          316 YAGGLGGTYGGNPVTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVD-IIGEVRGRGAMLAIEIVKPGTLEPD  394 (453)
T ss_dssp             CTTSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCS-SEEEEEEETTEEEEEEBCTTSCCBC
T ss_pred             cccCcCCCCCcCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHhhCC-CeEEEEeeceEEEEEEecCcccCCC
Confidence            887788999999999999999999887788999999999999999999877774 67778889999999884310    1


Q ss_pred             chhHHHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 PVSAYDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .....++.+.|+++||++.+++.  +.+||++++..+++++++++++|+++++ ++
T Consensus       395 ~~~~~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~  449 (453)
T 4ffc_A          395 AALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDIIR-AK  449 (453)
T ss_dssp             HHHHHHHHHHHHHTTEECCEECTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHhCCCEEecCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            22477899999999999998654  8999999999999999999999999998 65

>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal 5'-phosphate, arginine metabolism, lysine biosynthesis, gabaculine; HET: PLP; 1.91A {Salmonella typhimurium} PDB: 2pb0_A*

Probab=100.00  E-value=3.3e-44  Score=340.70  Aligned_cols=337  Identities=34%  Similarity=0.545  Sum_probs=281.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++++..+.++.+..+...+++++|+++++.+++++++||++|++.++++++.+. ..+| .+++++|++++++||
T Consensus        80 ~ai~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~ggteA~~~al~~~~~~~-~~~~-~~g~~~vi~~~~~yh  157 (420)
T 2pb2_A           80 EALKSQGETLWHTSNVFTNEPALRLGRKLIDATFAERVLFMNSGTEANETAFKLARHYA-CVRH-SPFKTKIIAFHNAFH  157 (420)
T ss_dssp             HHHHHHHTTCCCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHH-HHHT-CTTCCEEEEETTCCC
T ss_pred             HHHHHHHHhcccccCccCCHHHHHHHHHHHhhCCCCeEEEeCCHHHHHHHHHHHHHHHh-hhcc-CCCCCEEEEEeCCcC
Confidence            57777777766554456678899999999999999999999999999999999987532 1222 123469999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      +.+..+..+++...+..++.|...++..++++|+++|+++++   +++++++++|++|++|.+.++.+++++|.++|++|
T Consensus       158 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~le~~i~---~~~~~vi~~p~~~~gG~~~~~~~~l~~l~~l~~~~  234 (420)
T 2pb2_A          158 GRSLFTVSVGGQPKYSDGFGPKPADIIHVPFNDLHAVKAVMD---DHTCAVVVEPIQGEGGVQAATPEFLKGLRDLCDEH  234 (420)
T ss_dssp             CSSHHHHHHSSCHHHHTTSSSCCSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT
T ss_pred             CcCHHHHHhcCCccccccCCCCCCCeEEecCCCHHHHHHHhc---cCceEEEEeCCcCCCCeecCCHHHHHHHHHHHHHc
Confidence            998877776666555666777777788888889999999987   57999999999887777777999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |++||+||+|+|+++.|..+..+.+++.||++||||++++|+ |+|++++++++++.+....++.+|++++++++++.++
T Consensus       235 gi~lI~Dev~~g~~~~g~~~~~~~~~~~~diit~sK~l~~G~-~iG~~~~~~~l~~~l~~~~~~~t~~~~~~~~aa~~a~  313 (420)
T 2pb2_A          235 QALLVFDEVQCGMGRTGDLFAYMHYGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGSHGSTYGGNPLACAVAGAA  313 (420)
T ss_dssp             TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTCC----CCEECCCHHHHHHHHHH
T ss_pred             CCEEEEEcCCcCcccCCcHHHHHhcCCCCCeEEecccccCCC-ceEEEEEhHHHHHhhcCCCcCcccCcCHHHHHHHHHH
Confidence            999999999999988887766666778899999999999999 9999999999988888766778899999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+.++++.++++++++++.+.|+++...+| .+...++.|.++++.++... ..+..++.+.|+++||.+.+++++++
T Consensus       314 L~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~v~~~~~~-~~~~~~l~~~l~~~Gi~v~~~~~~~i  391 (420)
T 2pb2_A          314 FDIINTPEVLQGIHTKRQQFVQHLQAIDEQFD-IFSDIRGMGLLIGAELKPKY-KGRARDFLYAGAEAGVMVLNAGADVM  391 (420)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHC-CEEEEEEETTEEEEEECGGG-TTCHHHHHHHHHHTTEECEESSTTEE
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHhcCC-CeEEEEecceEEEEEECCCc-hHHHHHHHHHHHHCCCEEEeCCCCEE
Confidence            99887778899999999999999988754443 55566778999999886420 01367899999999999999878999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++|++..+++++++++++|+++++
T Consensus       392 Rl~~~~~~t~eei~~~~~~l~~~l~  416 (420)
T 2pb2_A          392 RFAPSLVVEEADIHEGMQRFAQAVG  416 (420)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987

>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target 11246C, deino radiodurans, pyridoxal phosphate, transfe PSI-2; 1.70A {Deinococcus radiodurans}

Probab=100.00  E-value=5.9e-44  Score=340.15  Aligned_cols=343  Identities=30%  Similarity=0.508  Sum_probs=266.7

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++++..++++ .++.+.+.+++++|++.+  +.+++++++||++|++.++++++.++ ..+| ++++++|+++++
T Consensus        52 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~al~~~~~~~-~~~g-~~~~~~vi~~~~  129 (430)
T 3i4j_A           52 ERMAAQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYH-VERG-EPGRFKVITRVP  129 (430)
T ss_dssp             HHHHHHHHHCCCCCTTTCEEHHHHHHHHHHHHHTTCTTCEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred             HHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEEeC
Confidence            577778877665443 577788999999999988  56799999999999999999997653 3344 344589999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCC--CceeccCCC--------HHHHHHHHHhcC-CcEEEEEEccccC-CCCcccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLP--GHLKVDFGD--------ITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIP  146 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~d--------~~~le~~l~~~~-~~~~~vi~~~~~~-~~g~~~~  146 (374)
                      +|||....+..+++.+.+...+.+...  ++..+++++        +++|++++++.+ +++++++++|+++ ++|.+.+
T Consensus       130 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~~~~G~~~~  209 (430)
T 3i4j_A          130 SYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRALLEREGPETVAAFMAEPVVGASDAALAP  209 (430)
T ss_dssp             C-------------------------CGGGSCEECCCCTTSCHHHHHTHHHHHHHHHCGGGEEEEEECSSCCGGGTTCCC
T ss_pred             CcCCCCcccccccCccccccccCCcCCCCCceEcCCCcccchhhHHHHHHHHHHHhcCCCCEEEEEEcCcccCcCCcccC
Confidence            999999888887777666666666655  666777653        489999998643 5789999999999 9999999


Q ss_pred             ChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccC-CCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCC--
Q 017259          147 PDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-EVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPG--  222 (374)
Q Consensus       147 ~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~-~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~--  222 (374)
                      +++++++|.++|++||++||+||+|++|++.|..++...+ +..||+++|||++++| + |+||+++++++++.+...  
T Consensus       210 ~~~~l~~l~~l~~~~~~~li~DEv~~~~~~~g~~~~~~~~~~~~~di~t~sK~l~~G~~-r~G~~~~~~~i~~~~~~~~~  288 (430)
T 3i4j_A          210 APGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYA-PLAGLLAAPQVYETVMGGSG  288 (430)
T ss_dssp             CTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTTCCCSEEEECGGGTTTSS-CCEEEEECHHHHHHHHHTTC
T ss_pred             CHHHHHHHHHHHHHcCCEEEEechhhCCCcccchhhhhhhcCCCCcEEEEcccccCCcc-ccEEEEECHHHHHHHhccCC
Confidence            9999999999999999999999999999999887788888 8999999999999999 8 999999999998888753  


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----
Q 017259          223 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----  295 (374)
Q Consensus       223 --~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----  295 (374)
                        .+..+++.++++++++.++++.+.++++.++++++.+++++.|+++...+| .+...++.|.++++.+.+...     
T Consensus       289 ~~~~~~t~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~  367 (430)
T 3i4j_A          289 AFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFP-QMMQVRGTGLLLGVVLGDLATGQAFE  367 (430)
T ss_dssp             BCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEC---------
T ss_pred             cccccCCCCCCHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEeccccccCCCc
Confidence              567889999999999999999887788999999999999999999876764 677788889999998853210     


Q ss_pred             -chhHHHHHHHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 -PVSAYDICLKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 -~~~~~~~~~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       .....++++.|+++||++++.       .++++||++++..+++++++++++|+++++ ++
T Consensus       368 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~  428 (430)
T 3i4j_A          368 TPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEVDGLLALLAGALE-DV  428 (430)
T ss_dssp             ---CHHHHHHHHHHTTEECC-----------CEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             cHHHHHHHHHHHHhCCCEEEecccccCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence             012467999999999999986       368999999999999999999999999987 54

>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1, pyridoxal-5'-phosphate dependent racemase, pyrid phosphate, isomerase; HET: PLP; 2.21A {Achromobacter obae} PDB: 2zuk_A* 3dxw_A*

Probab=100.00  E-value=4.5e-43  Score=334.91  Aligned_cols=338  Identities=26%  Similarity=0.459  Sum_probs=278.9

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CC-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++++..+++ ..++.+.+.+++++|++.+  +. +++++++||++|++.++++++.+.   ++     ++|++++
T Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~ggsea~~~al~~~~~~~---~~-----~~vi~~~  137 (439)
T 3dxv_A           66 AAVSAAAANPAGATILSASNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAIVKAT---GR-----SGVIAFA  137 (439)
T ss_dssp             HHHHHHHHSCSCSCSSSSEEHHHHHHHHHHHHTTTCTTTEEEEEESSHHHHHHHHHHHHHHHH---SC-----CEEEEET
T ss_pred             HHHHHHHHhccCccccccCCHHHHHHHHHHHHhCCCCCCCEEEEeCCHHHHHHHHHHHHHHHh---CC-----CEEEEEC
Confidence            56777777765544 4567888999999999988  66 699999999999999999875421   23     7899999


Q ss_pred             cCCCCcccccccccCCcc--ccccCCCCCCCceeccCC----------CHHHHHHHHH-hcCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCDNE--AIRGFGPLLPGHLKVDFG----------DITALEKIFK-ESGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~----------d~~~le~~l~-~~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+..+++...  +...+.+...++..++++          |+++|+++++ .+++++++++++|+++++|.+
T Consensus       138 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~G~~  217 (439)
T 3dxv_A          138 GAYHGCTVGSMAFSGHSVQADAAKADGLILLPYPDPYRPYRNDPTGDAILTLLTEKLAAVPAGSIGAAFIEPIQSDGGLI  217 (439)
T ss_dssp             TCCCCSSHHHHCC-------------CEEEECCCCSSSCBTTBTTSHHHHHHHHHHHHTSCTTCEEEEEECSSBSTTTSB
T ss_pred             CCCCCCcHHHHhhcCCCchhhccccCCCCCCcEEcCCCcccccccHHHHHHHHHHHHHhcCCCCEEEEEEccccCCCCCc
Confidence            999999988887776544  554555544445555655          5899999994 334689999999999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||++||+||+|+||++.|..+..+.++..||++||||++++|+ |+||+++++++++.+....+
T Consensus       218 ~~~~~~l~~l~~l~~~~~~~li~DE~~~g~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-riG~~~~~~~~~~~~~~~~~  296 (439)
T 3dxv_A          218 VPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGFVPDILVLGKGLGGGL-PLSAVIAPAEILDCASAFAM  296 (439)
T ss_dssp             CCCTTHHHHHHHHHHHTTCEEEEECTTTCTTTTSSSSGGGGTTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTSCSSSSC
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEeccccCCCcCchhhHHHhcCCCCCEEEEcchhcCCc-ceEEEEECHHHHhhhcCCCc
Confidence            99999999999999999999999999999988888777788889999999999999999 99999999999999987777


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSA  299 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~  299 (374)
                      ..++ .++++++++.++++.+.++++.++++++.+++++.|+++...++ .+...++.|.++++.+....     .....
T Consensus       297 ~~t~-~~~~~~~aa~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  374 (439)
T 3dxv_A          297 QTLH-GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHP-LIGDIRGRGLACGMELVCDRQSREPARAET  374 (439)
T ss_dssp             CTTT-TCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEECHHHH
T ss_pred             CCCc-ccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCCHHHH
Confidence            8889 99999999999999887788999999999999999999877764 67778889999998873210     01246


Q ss_pred             HHHHHHHHHCCeEeccCCC--CEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          300 YDICLKMKERGILAKPTHD--TIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .++++.|+++||.+++++.  +++||++++..+++++++++++|+++++ ++.+
T Consensus       375 ~~~~~~l~~~Gv~v~~~~~~~~~iRi~~~~~~t~e~i~~~l~~l~~~l~-~~~~  427 (439)
T 3dxv_A          375 AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFS-ELSA  427 (439)
T ss_dssp             HHHHHHHHHHTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-TGGG
T ss_pred             HHHHHHHHHCCcEEeecCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-HHhc
Confidence            7899999999999998754  8999999999999999999999999999 7754

>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for structural genomics O infectious diseases, alpha and beta protein; HET: LLP; 2.65A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=8.3e-43  Score=328.17  Aligned_cols=333  Identities=49%  Similarity=0.869  Sum_probs=288.5

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++++..+.+..++.+...+++++|++++|.+++++++||++|++.++++++.+++..+|.++++++|++..++||
T Consensus        59 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~~gt~a~~~al~~~~~~~~~~~~~~~~~~~vi~~~~~~~  138 (392)
T 3ruy_A           59 NALIDQANRVTLTSRAFHSDQLGPWYEKVAKLTNKEMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIVCEDNFH  138 (392)
T ss_dssp             HHHHHHHTTCSCCCTTSEETTHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTCCC
T ss_pred             HHHHHHHHhccccccccCCHHHHHHHHHHHHhcCCCEEEEeCcHHHHHHHHHHHHHHhhhhccCCCCCCcEEEEEcCCcC
Confidence            56667776666655567788999999999999999999999999999999999887543233444445589999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |....+..+++.+.+...+.+...++..++++|+++|+++++   ++++++++++++|++|.+.++++++++|.++|++|
T Consensus       139 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~i~~l~~~~  215 (392)
T 3ruy_A          139 GRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAIT---PNTAAFILEPIQGEAGINIPPAGFLKEALEVCKKE  215 (392)
T ss_dssp             CSSHHHHHTCSCTTTTTTCCSCCSSEEEECTTCHHHHHHHCC---TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHTT
T ss_pred             CCCHhhhhccCChhhccccCCCCCCCeeeCcccHHHHHHHhc---cCeEEEEEeCccCCCCCccCCHHHHHHHHHHHHHc
Confidence            999988888887778878888777888888889999999987   58999999999999999998888899999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      |++||+||+|+++++.|..+....++..+|+++|||+++|| + |+|++++++++.+.+.......+++.++++++++.+
T Consensus       216 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~~~SK~l~gG~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  294 (392)
T 3ruy_A          216 NVLFVADEIQTGLGRTGKVFACDWDNVTPDMYILGKALGGGVF-PISCAAANRDILGVFEPGSHGSTFGGNPLACAVSIA  294 (392)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEECHHHHTTCCTTSSCCSSTTCHHHHHHHHH
T ss_pred             CCEEEEeechhCCCccccchhhhccCCCCCEEEEchhhhCChh-hhEEEEECHHHHhhhccCCcCCCCCCCHHHHHHHHH
Confidence            99999999999998888877777778889999999999999 7 999999999999999887788899999999999999


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+..+++.++++++.+++.+.|+++.  . +.+...++.+.++++.++.     +..++.+.|.++||.+++++.++
T Consensus       295 ~l~~~~~~~~~~~~~~~~~~l~~~L~~~~--~-~~~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~~~~~~  366 (392)
T 3ruy_A          295 ALEVLEEEKLTERSLQLGEKLVGQLKEID--N-PMITEVRGKGLFIGIELNE-----PARPYCEQLKAAGLLCKETHENV  366 (392)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHTTCC--C-TTEEEEEEETTEEEEEESS-----CSHHHHHHHHTTTEECCCBTTTE
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHhc--C-CCceEEEeeeeEEEEEEcc-----hHHHHHHHHHHCCcEEecCCCCE
Confidence            99988767788889999999988887652  1 2455667788999988764     35789999999999999998899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+++++..+++++++++++|+++++
T Consensus       367 iRi~~~~~~~~~~i~~~~~~l~~~l~  392 (392)
T 3ruy_A          367 IRIAPPLVISEEDLEWAFQKIKAVLS  392 (392)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHhC
Confidence            99999999999999999999998763

>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal phosphate, PLP, RV3290C, lysine amino transferase; HET: PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A* 2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A

Probab=100.00  E-value=1.6e-42  Score=331.68  Aligned_cols=335  Identities=28%  Similarity=0.431  Sum_probs=277.3

Q ss_pred             HHHH---HHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccc----cCC-CCcc
Q 017259            3 ALQE---QAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKK----KFS-IDEA   71 (374)
Q Consensus         3 a~~~---~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~----G~~-~~~~   71 (374)
                      |+.+   +++++.++++.+..+...+++++|++++   +.++++|++||++|++.|+++++.+. ..+    |.+ ++++
T Consensus        80 A~~~~~~~~~~~~~~~~~~~~~~~~~la~~la~~~~~~~~~~v~~~~~gseA~~~aik~a~~~~-~~~~~~~~~~~~~~~  158 (449)
T 2cjg_A           80 EFHAELMQAALNKPSNSDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWK-SRHNQAHGIDPALGT  158 (449)
T ss_dssp             HHHHHHHHHHTCCCCTTTCCCHHHHHHHHHHHHHHCCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHHHHHTTSCTTCCC
T ss_pred             HHHHHHHHHHhcCCCCcccCCHHHHHHHHHHHHhcCCCCCCEEEEeCchHHHHHHHHHHHHHHh-cccccccccccCCCC
Confidence            7888   7877766555577788999999999987   56799999999999999999886442 111    111 1138


Q ss_pred             EEEEeccCCCCcccccccccCC-ccccccCCCCCCCceeccCCC--HH-------------HHHHHHHhcCCcEEEEEEc
Q 017259           72 IIVSCCGCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFGD--IT-------------ALEKIFKESGDQIAGFLFE  135 (374)
Q Consensus        72 ~vi~~~~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d--~~-------------~le~~l~~~~~~~~~vi~~  135 (374)
                      +|++++++|||.+..+..+++. +.++.++.|...++..++++|  .+             +|+++++++++++++++++
T Consensus       159 ~Vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~~le~~i~~~~~~~~~vi~e  238 (449)
T 2cjg_A          159 QVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMAALEAEALRQARAAFETRPHDIACFVAE  238 (449)
T ss_dssp             EEEEETTCCCCSSTTGGGTCCSCHHHHTTSCCCCCCEECCCCCCTTCCHHHHHHHHHHHHHHHHHHHHHSTTTEEEEEEC
T ss_pred             EEEEECCCcCCcccchhhhcCCchhhcccCCCCCCCcEEEcCCCchhhccccchhhHHHHHHHHHHHHhcCCceEEEEEe
Confidence            9999999999999988877765 455566666666677777766  43             3888887655689999999


Q ss_pred             cccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHH
Q 017259          136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEV  215 (374)
Q Consensus       136 ~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~  215 (374)
                      |++|++|.+.++++++++|.++|++||++||+||+|+|+++.|..+....+++.||++++||++     |+|++++++++
T Consensus       239 p~~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~~~~~di~t~sK~l-----~iG~~~~~~~~  313 (449)
T 2cjg_A          239 PIQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKT-----QVCGVMAGRRV  313 (449)
T ss_dssp             SEETTTTCEECCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGG-----SSEEEEECGGG
T ss_pred             CcCCCCCCccCCHHHHHHHHHHHHHCCcEEEEeccccCCCccCcceeecccCCCceEEEecCcc-----cEEEEEECHHH
Confidence            9999999888899999999999999999999999999999988876767778899999999987     68899999998


Q ss_pred             Hhhc-----CCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe
Q 017259          216 MLCI-----QPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF  290 (374)
Q Consensus       216 ~~~~-----~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~  290 (374)
                      ++.+     ....++.++++++++++++.++++.+.++++.++++++++++++.|+++...+|..+...++.|.++++++
T Consensus       314 ~~~l~~~~~~~~~~~~t~~~n~~~~~aa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~~~~~~~~g~~~~~~~  393 (449)
T 2cjg_A          314 DEVADNVFAVPSRLNSTWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLMCAFSL  393 (449)
T ss_dssp             GGSTTCTTTSTTSSCCSSSSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHSTTTSEEEEEETTEEEEEC
T ss_pred             hhhhhhcccCCcccccCCCCCHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhCCCceeeEeeccEEEEEEE
Confidence            8863     33346678999999999999999988777899999999999999999886655422556778899999887


Q ss_pred             ccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          291 DKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +...   ...++++.|+++||.+.+++.+++|++|++.++++++++++++|+++++
T Consensus       394 ~~~~---~~~~~~~~l~~~Gv~v~~~g~~~iRi~~~~~~t~e~i~~~l~~l~~~l~  446 (449)
T 2cjg_A          394 PTTA---DRDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVRSALP  446 (449)
T ss_dssp             SSHH---HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CChH---HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            6421   4678999999999999998779999999999999999999999999987

>4adb_A Succinylornithine transaminase; transferase, PLP enzymes, aminotransferase; HET: PLP; 2.20A {Escherichia coli} PDB: 4adc_A* 4add_A* 4ade_A

Probab=100.00  E-value=8.6e-42  Score=322.58  Aligned_cols=340  Identities=32%  Similarity=0.510  Sum_probs=289.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++.+..+....++.+...+++++|+++++.+++++++||++|++.++++++.++ ..+| .+++++|++.+|+||
T Consensus        62 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~v~~~~gg~~a~~~al~~~~~~~-~~~~-~~g~~~vi~~~~~y~  139 (406)
T 4adb_A           62 EALNEQASKFWHTGNGYTNEPVLRLAKKLIDATFADRVFFCNSGAEANEAALKLARKFA-HDRY-GSHKSGIVAFKNAFH  139 (406)
T ss_dssp             HHHHHHHTTCSCCCTTSCCHHHHHHHHHHHHHSSCSEEEEESSHHHHHHHHHHHHHHHH-HHHT-CTTCCEEEEETTCCC
T ss_pred             HHHHHHHHhcccccCCcCCHHHHHHHHHHHhhCCCCeEEEeCcHHHHHHHHHHHHHHHH-HhcC-CCCCcEEEEECCCcC
Confidence            56677776665655556788899999999999999999999999999999999886432 1111 123489999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      +....+...++.+.+...+.+...++..++++|+++|+++++   +++++++++|.++.+|.+.++.+.+++|.++|++|
T Consensus       140 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~p~np~g~~~~~~~~~l~~l~~l~~~~  216 (406)
T 4adb_A          140 GRTLFTVSAGGQPAYSQDFAPLPADIRHAAYNDINSASALID---DSTCAVIVEPIQGEGGVVPASNAFLQGLRELCNRH  216 (406)
T ss_dssp             CSSHHHHHHSSCGGGTGGGCSCCSSEEEECTTCHHHHHTTCS---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHHT
T ss_pred             CCcHHHhhccCCccccccCCCCCCCceEeCCCcHHHHHHHhc---CCeEEEEEeCCcCCCCCccCCHHHHHHHHHHHHHc
Confidence            999888888887777777777777888889899999999887   58999999976655666666899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |++||+||+|+++++.|..+....++..+|+++|||.+++|+ |+||+++++++.+.+.......+++.++++++++.++
T Consensus       217 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~t~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  295 (406)
T 4adb_A          217 NALLIFDEVQTGVGRTGELYAYMHYGVTPDLLTTAKALGGGF-PVGALLATEECARVMTVGTHGTTYGGNPLASAVAGKV  295 (406)
T ss_dssp             TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHHTCCTTSSCCSSTTCHHHHHHHHHH
T ss_pred             CCEEEEeccccCCCccchhHHHHhcCCCCCEEEechhhcCCC-CeEEEEEcHHHHhhhccCCcCCCCCCCHHHHHHHHHH
Confidence            999999999999988888777677788899999999999998 9999999999999998877788999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+..+++.++++++++++.+.|+++...+ ......++.+.++++.++... ..+..++++.|.++||.+++.+.+++
T Consensus       296 l~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~gi~v~~~~~~~i  373 (406)
T 4adb_A          296 LELINTPEMLNGVKQRHDWFVERLNTINHRY-GLFSEVRGLGLLIGCVLNADY-AGQAKQISQEAAKAGVMVLIAGGNVV  373 (406)
T ss_dssp             HHHHSSHHHHHHHHHHHHHHHHHHHHHHHHH-CCEEEEEEETTEEEEEECTTT-TTCHHHHHHHHHHTTEECEESSTTEE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEEEEEEEEEEeCCc-HHHHHHHHHHHHHCCcEEeecCCCeE
Confidence            9988777889999999999999999886554 355566778899999886531 01478899999999999999888999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      |++++...+++++++++++|+++++ ++.
T Consensus       374 Ri~~~~~~~~e~i~~~~~~l~~~l~-~~~  401 (406)
T 4adb_A          374 RFAPALNVSEEEVTTGLDRFAAACE-HFV  401 (406)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred             EEECCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence            9999999999999999999999998 653

>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class, PLP-dependent transferase-like, bacillus A csgid, porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus anthracis} SCOP: c.67.1.0

Probab=100.00  E-value=1.2e-41  Score=324.66  Aligned_cols=332  Identities=26%  Similarity=0.376  Sum_probs=273.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.+++.++..  ..++.+...+++++|++.+ +.++++|++||++|++.|+++++.+.   ++     ++|++++++|
T Consensus        78 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sGsea~~~ai~~a~~~~---~~-----~~vi~~~~~y  147 (434)
T 3l44_A           78 KAITTAAENGVL--YGTPTALEVKFAKMLKEAMPALDKVRFVNSGTEAVMTTIRVARAYT---GR-----TKIMKFAGCY  147 (434)
T ss_dssp             HHHHHHHHHCSC--CSSCCHHHHHHHHHHHHHCTTCSEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEETTCC
T ss_pred             HHHHHHHHhCcC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHHHHHhh---CC-----CEEEEEcCcc
Confidence            567777776532  2366888899999999987 78899999999999999999987431   23     8999999999


Q ss_pred             CCcccccccccCCccccccC--CCC-----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGF--GPL-----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~--~~~-----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+...++.+......  .+.     ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus       148 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  227 (434)
T 3l44_A          148 HGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVITVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEK  227 (434)
T ss_dssp             CCSSGGGGBC-------CCCBSSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred             CCCcHHHHhhcCCcccccCCCCcCCCCCcCCCceEecCcccHHHHHHHHHhCCCCEEEEEEcCCCCCCCCccCCHHHHHH
Confidence            99988877766543221111  000     12466778889999999998766689999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||++||+||+|+|| +.|..++...+++.||+++|||++++|+ |+|++++++++++.+..   ..++.+|++
T Consensus       228 l~~l~~~~~illI~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~i~~~~~~~~~~~~~~t~~~  305 (434)
T 3l44_A          228 VNELVHEAGALVIYDEVITAF-RFMYGGAQDLLGVTPDLTALGKVIGGGL-PIGAYGGKKEIMEQVAPLGPAYQAGTMAG  305 (434)
T ss_dssp             HHHHHHTTTCEEEEECTTTTT-TSSSSCHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHHHcCCEEEEeccccce-eccccHHHHHcCCCCCeeehhhhhcCCc-CeeeEEEcHHHHHhhccCCCcccCCCCCc
Confidence            999999999999999999999 8888777778889999999999999998 99999999999998876   346778999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~  300 (374)
                      ++++++++.++++.+.++++.++++++.+++++.|+++...+ +.+...++.|.++++.+.....          .....
T Consensus       306 ~~~a~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  384 (434)
T 3l44_A          306 NPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKH-NIDITLNRLKGALTVYFTTNTIEDYDAAQDTDGEMFG  384 (434)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCEEEEEETTEEEEEESSSCCCSHHHHHHSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHhC-CCCEEEEeeccEEEEEEecCcccchhhccccCHHHHH
Confidence            999999999999988777899999999999999999987665 3666778889999998843210          11346


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.+.|+++||.+++++.+.+|++  +..+++++++++++|+++++ ++
T Consensus       385 ~~~~~l~~~Gv~v~~~~~~~~rl~--~~~t~e~i~~~l~~l~~~l~-~~  430 (434)
T 3l44_A          385 KFFKLMLQEGVNLAPSKYEAWFLT--TEHTKEDIEYTIEAVGRAFA-AL  430 (434)
T ss_dssp             HHHHHHHHTTEECCSSTTCCEECC--TTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHCCeEEeecCCCcEEEe--cccCHHHHHHHHHHHHHHHH-HH
Confidence            799999999999999877888986  78999999999999999998 65

>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet, transaminase, pyridox phosphate; HET: PLP; 1.40A {Pseudomonas putida}

Probab=100.00  E-value=1.3e-41  Score=325.68  Aligned_cols=341  Identities=25%  Similarity=0.426  Sum_probs=269.7

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++.+...... .+..+...+++++|++++  +.+++++++||++|++.++++++.+. ..+| .+++++|+++++
T Consensus        73 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggsea~~~al~~~~~~~-~~~g-~~~~~~vi~~~~  150 (449)
T 3a8u_X           73 EAVAKQLSTLDYSPGFQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYW-RLKG-QATKTKMIGRAR  150 (449)
T ss_dssp             HHHHHHTTTCSCCCSSSCCCHHHHHHHHHHHTTSSTTEEEEEEESSHHHHHHHHHHHHHHHH-HHTT-CTTCCEEEEETT
T ss_pred             HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCCCCCEEEEcCcHHHHHHHHHHHHHHHH-HhcC-CCCCCEEEEECC
Confidence            456666655431111 466778899999999988  56799999999999999999987543 2222 223389999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCC----------C--------HHHHHHHHHhcC-CcEEEEEEccccC
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----------D--------ITALEKIFKESG-DQIAGFLFEPIQG  139 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------d--------~~~le~~l~~~~-~~~~~vi~~~~~~  139 (374)
                      +||+.+..+..+++.+.++.++.+...++..++.+          |        +++|++++++++ +++++++++|+++
T Consensus       151 ~yhg~~~~~~~~~g~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~d~~~~~~~~~~~le~~l~~~~~~~~~~vi~~p~~~  230 (449)
T 3a8u_X          151 GYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADELLKLIELHDASNIAAVFVEPLAG  230 (449)
T ss_dssp             CCCCSSHHHHHHCCCHHHHTTTCCCSCSEEEECCCCCGGGTTCSSSCSSSHHHHHHHHHHHHHHHCGGGEEEEEECSSBT
T ss_pred             CcCCCChhhhhccCChhhccccCCCCCCCeEecCCccccCccccCChHHHHHHHHHHHHHHHHhcCCCCEEEEEEcCccC
Confidence            99999877666665544444444443343333221          4        889999998653 4789999999988


Q ss_pred             CCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhh
Q 017259          140 EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLC  218 (374)
Q Consensus       140 ~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~  218 (374)
                      ++|.+.++++++++|.++|++||++||+||+|++|++.|..+..+.+++.||++|+||++++| + |+|++++++++++.
T Consensus       231 ~tG~~~~~~~~l~~l~~l~~~~~~~li~Dev~~~~g~~g~~~~~~~~~~~~di~s~sK~l~~G~~-~~G~~~~~~~~~~~  309 (449)
T 3a8u_X          231 SAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFGRTGSMFGADSFGVTPDLMCIAKQVTNGAI-PMGAVIASTEIYQT  309 (449)
T ss_dssp             TTTCBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTSS-CCEEEEEEHHHHHH
T ss_pred             CCCCccCCHHHHHHHHHHHHHhCCEEEEeccccCccccCcchhhhhcCCCCCEEEEcccccCCCC-ceEEEEECHHHHHH
Confidence            899889899999999999999999999999999998888766666778889999999999988 7 99999999998888


Q ss_pred             cCCC---------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259          219 IQPG---------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE  289 (374)
Q Consensus       219 ~~~~---------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~  289 (374)
                      +...         .+..++++++++++++.++++.+.++++.++++++.+++++.|+++ ..++ .+...++.|.++++.
T Consensus       310 l~~~~~~~~~~~~~~~~t~~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l-~~~~-~~~~~~~~g~~~~i~  387 (449)
T 3a8u_X          310 FMNQPTPEYAVEFPHGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGI-KGAK-NVIDIRNFGLAGAIQ  387 (449)
T ss_dssp             HHTCSSCTTSCSSCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHTT-TTST-TEEEEEEETTEEEEE
T ss_pred             hhccCcccccccccccCCCcccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH-hcCC-CeEEEeeeEEEEEEE
Confidence            7653         3456889999999999999998877788999999999999999874 2343 555567789999998


Q ss_pred             eccCCCch--hHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          290 FDKTALPV--SAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       290 ~~~~~~~~--~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++......  +..++.+.|+++||.+++++ +++||+|++..+++++++++++|+++++ ++
T Consensus       388 ~~~~~~~~~~~~~~~~~~l~~~Gv~v~~~g-~~iRis~~~~~t~~~i~~~l~~l~~~l~-~~  447 (449)
T 3a8u_X          388 IAPRDGDAIVRPFEAGMALWKAGFYVRFGG-DTLQFGPTFNSKPQDLDRLFDAVGEVLN-KL  447 (449)
T ss_dssp             ECCBTTBSSHHHHHHHHHHHHHTEECEEET-TEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             EecCcccccccHHHHHHHHHHCCcEEecCC-CEEEEECCCcCCHHHHHHHHHHHHHHHH-HH
Confidence            86432111  23379999999999999975 8999999999999999999999999987 54

>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase; HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP: c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A* 1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A* 1d7r_A* 1d7v_A* 1z3z_A*

Probab=100.00  E-value=4.7e-41  Score=320.35  Aligned_cols=334  Identities=29%  Similarity=0.482  Sum_probs=269.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.++++++.+....++.+...+++++|++.++  .+++++++||++|++.++++++.+    +|    +++|++++|+
T Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~ea~~~a~~~~~~~----~~----~~~vi~~~~~  137 (433)
T 1zod_A           66 SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV----TG----KYEIVGFAQS  137 (433)
T ss_dssp             HHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHH----HT----CCEEEEETTC
T ss_pred             HHHHHHHHhCcccccccCCHHHHHHHHHHHHhCCCCcCEEEEeCchHHHHHHHHHHHHHh----hC----CCeEEEECCC
Confidence            5777787776544445667788999999999884  679999999999999999987532    12    2799999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceecc--------CC---------CHHHHHHHHHhcC-CcEEEEEEccccCCC
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD--------FG---------DITALEKIFKESG-DQIAGFLFEPIQGEA  141 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~---------d~~~le~~l~~~~-~~~~~vi~~~~~~~~  141 (374)
                      |||....+...++.+ +...+.+...++..++        ++         |+++|++++++++ +++++++++|++|++
T Consensus       138 yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~~vi~~p~~~~~  216 (433)
T 1zod_A          138 WHGMTGAAASATYSA-GRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG  216 (433)
T ss_dssp             CCCSSHHHHHTCCSS-CCSSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTT
T ss_pred             cCCCChhHHhhcCCc-cccccCCCCCCceEecCCcccccccCCchhhhHHHHHHHHHHHHHhcCCCCeEEEEEccccCCC
Confidence            999988776655432 2223333333333332        22         3889999998642 578999999998889


Q ss_pred             CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259          142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~  221 (374)
                      |.+.++++++++|.++|++||++||+||+|++|++.|..+..+.++..||++|+||++++|+ |+||+++++++++.+..
T Consensus       217 G~~~~~~~~l~~l~~l~~~~~~~li~DEv~~~~g~~g~~~~~~~~~~~~di~s~sK~~~~G~-~ig~~~~~~~~~~~~~~  295 (433)
T 1zod_A          217 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHE  295 (433)
T ss_dssp             TCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHH
T ss_pred             CcccCCHHHHHHHHHHHHHhCCEEEEeccccCCCcCchHhHHhhcCCCCCEEEecccccCCC-CeeEEEEhHHHHHhhcc
Confidence            98888999999999999999999999999999988887666666788899999999999998 99999999998888765


Q ss_pred             CC--CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259          222 GE--HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----  295 (374)
Q Consensus       222 ~~--~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  295 (374)
                      ..  ++.++++++++++++.++++.+.++++.++++++++++++.|+++...+| .+...++.|.++++.++....    
T Consensus       296 ~~~~~~~t~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~l~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~  374 (433)
T 1zod_A          296 LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVEIVKDRRTKEP  374 (433)
T ss_dssp             TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCC
Confidence            32  34788999999999999999887778999999999999999998765554 556677889999998753200    


Q ss_pred             -chhHHHHHHHHHHCCeEeccCC--C--CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 -PVSAYDICLKMKERGILAKPTH--D--TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 -~~~~~~~~~~l~~~Gi~v~~~~--~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .....++.+.|+++||.+.++.  .  +++||++++..+++++++++++|+++++
T Consensus       375 ~~~~~~~~~~~l~~~Gv~v~~~~~~~~~~~lRi~~~~~~t~~~i~~~l~~l~~~l~  430 (433)
T 1zod_A          375 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  430 (433)
T ss_dssp             CTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHCCCeEeccCCCCCCCEEEEECCcCCCHHHHHHHHHHHHHHHH
Confidence             0147789999999999998864  2  8999999999999999999999999887

>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A {Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*

Probab=100.00  E-value=1.2e-42  Score=351.39  Aligned_cols=344  Identities=22%  Similarity=0.329  Sum_probs=273.1

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHH-HHcccccccCC-------CC
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLA-RKWGYVKKKFS-------ID   69 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~-~~~~~~~~G~~-------~~   69 (374)
                      +|+++|++++.+..+ .+.++...+|+++|++..+   .++++|++|||+|++.|++++ +.|+ ..+|.+       ++
T Consensus       404 ~Ai~~Q~~~l~h~~~~~~~~~~~~~Lae~L~~~~p~~~l~~vff~~SGSeA~E~AlK~A~r~~~-~~~g~~~~~~~~~~~  482 (831)
T 4a0g_A          404 REMGYTAARFGHVMFPENVYEPALKCAELLLDGVGKGWASRVYFSDNGSTAIEIALKMAFRKFC-VDHNFCEATEEEKHI  482 (831)
T ss_dssp             HHHHHHHHHHSSCCCTTEECHHHHHHHHHHHHTTTTTTCCEEEEESSHHHHHHHHHHHHHHHHH-HTTTC---------C
T ss_pred             HHHHHHHhhcccccccccCCHHHHHHHHHHHHhCCCCCCCEEEECCChhHHHHHHHHHHHHHHH-hhcCCCccccccccC
Confidence            789999999888653 3568889999999999885   679999999999999999999 5554 344422       15


Q ss_pred             ccEEEEeccCCCCcccccccccCCcccccc-CCCCC---------------CCceec--c------------CCC-----
Q 017259           70 EAIIVSCCGCFHGRTLAAISMSCDNEAIRG-FGPLL---------------PGHLKV--D------------FGD-----  114 (374)
Q Consensus        70 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~-~~~~~---------------~~~~~~--~------------~~d-----  114 (374)
                      +.+||.+..+|||.+.++.++++...++.. ..++.               .++..+  |            +++     
T Consensus       483 r~~iI~~~~syHG~T~gals~tg~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~  562 (831)
T 4a0g_A          483 VVKVIALRGSYHGDTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSRDEIF  562 (831)
T ss_dssp             CEEEEEETTCCCCSSHHHHHTSCCCGGGSTTTCTTCCCCEEEECCCEEEEETTEEEEECCTTSCCCCSSTTEESCHHHHH
T ss_pred             ccEEEEecCCcccCceeeeeccCccccccccccccccCCccccCCccccccCCceEecCCccccccccccccccchhhhh
Confidence            689999999999999999999886555431 01110               011111  1            122     


Q ss_pred             -------------HHHHHHHHHh-----cCCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259          115 -------------ITALEKIFKE-----SGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus       115 -------------~~~le~~l~~-----~~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                                   .+.|++.|++     +++++++|++||+ ++.+|.+.++++++++|.++|++||++||+||+++|||
T Consensus       563 ~~~~~~~~~~~~~~~~le~~l~~~~~~~~~~~iaavi~Epvvqg~gG~~~~~~~~L~~l~~lc~~~gilLI~DEV~tGfG  642 (831)
T 4a0g_A          563 DKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQRVLVNECRNRKIPVIFDEVFTGFW  642 (831)
T ss_dssp             CGGGGGSHHHHHHHHHHHHHC---------CEEEEEEECCSEETTTTSEEECHHHHHHHHHHHHHTTCCEEEECTTTTTT
T ss_pred             cccccchhhhHHHHHHHHHHHHhhhhhcCCCcEEEEEEecccccCCCCccCCHHHHHHHHHHHHHcCCeEEEEcCccccc
Confidence                         2567777753     3578999999997 99999999999999999999999999999999999999


Q ss_pred             ccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC------CCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          176 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG------EHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      ++|..|+++++++.||++++||+++||++|+|++++++++++.+...      .+++||+++++++++++++|+.+++++
T Consensus       643 RtG~~fa~e~~gv~PDiitlsK~L~gG~~Plgav~~~~~i~~~~~~~~~~~~~~hg~T~~g~Pla~Aaala~L~~i~~~~  722 (831)
T 4a0g_A          643 RLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPE  722 (831)
T ss_dssp             TTSBSSTHHHHSSCCSEEEECGGGGTTSSCCEEEEECHHHHHTTCSSCGGGSCCCCCTTTTCHHHHHHHHHHHHHHHCTT
T ss_pred             cCCCchhhHhcCCCCcEEEEecccccCccCcEEEEECHHHHHHHhcccccccceeecCCcccHHHHHHHHHHHHHHHhhH
Confidence            99999998899999999999999999944999999999999988753      378899999999999999999998777


Q ss_pred             HHHHHHHHHHHHHH----HHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhHHHHHHHHHHCCeEeccCCCCE
Q 017259          250 LAERSAHLGEELRQ----HLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       250 ~~~~~~~~~~~~~~----~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +.++++++.+++++    .+.+....+ +.+..+++.|.++++++..+..     .....++.+.|+++||++++. ++.
T Consensus       723 l~~~~~~~~~~l~~~l~~~l~~~l~~~-~~v~~vrg~Gl~~~iel~~~~~~~~~~~~~a~~~~~~l~e~Gv~v~p~-g~~  800 (831)
T 4a0g_A          723 TNHNITSQGKTLRELWDEELVQQISSH-SAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPL-GNV  800 (831)
T ss_dssp             TCTTBCTTSSBBCCCSCHHHHHHHHHS-TTEEEEEEETTEEEEEEC---------CHHHHHHHHHHHHTTEECCCB-TTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhC-CCceeEeecccEEEEEEecCccccccchHHHHHHHHHHHHCCcEEEec-CCE
Confidence            77666555555432    333333445 4788899999999999854310     124667999999999999987 589


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +|++|++.+|++++++++++|.++++ ++
T Consensus       801 lrl~pp~~~t~e~id~~~~~l~~~l~-~l  828 (831)
T 4a0g_A          801 IYLMCGPCTSPEICRRLLTKLYKRLG-EF  828 (831)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHT-TT
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            99999999999999999999999998 65

>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of cofactors, prosthetic groups, and carriers, csgid, cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus anthracis str} SCOP: c.67.1.4 PDB: 3bs8_A*

Probab=100.00  E-value=4e-41  Score=320.43  Aligned_cols=331  Identities=25%  Similarity=0.376  Sum_probs=274.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+.  .++++...+++++|++++ +.++++|++||++|++.|+++++.+.   .     +++|++++++|
T Consensus        76 ~A~~~~~~~~~~~--~~~~~~~~~l~~~la~~~~~~~~v~~~~~Gsea~~~ai~~a~~~~---~-----~~~vi~~~~~y  145 (429)
T 3k28_A           76 EALKAVAERGTSF--GAPTEIENKLAKLVIERVPSIEIVRMVNSGTEATMSALRLARGYT---G-----RNKILKFIGCY  145 (429)
T ss_dssp             HHHHHHHHHCSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---T-----CCEEEEEETCC
T ss_pred             HHHHHHHhhCcCc--CCCCHHHHHHHHHHHHhCCCCCEEEEeCChHHHHHHHHHHHHHhh---C-----CCEEEEECCCc
Confidence            5777787776442  366788899999999987 78899999999999999999987431   2     38999999999


Q ss_pred             CCcccccccccCCccccccC--CCCC-----CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGF--GPLL-----PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~--~~~~-----~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+...++........  .+..     ..+..++++|+++++++++++++++++++++|+++++|.+.++++++++
T Consensus       146 hg~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  225 (429)
T 3k28_A          146 HGHGDSLLIKAGSGVATLGLPDSPGVPEGVAKNTITVAYNDLESVKYAFEQFGDDIACVIVEPVAGNMGVVPPQPGFLEG  225 (429)
T ss_dssp             CCSCGGGCSSCCTTC-----CCCTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred             CCCcHHHHHhcCCcccccCCCCcCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCCCCCCcccCCHHHHHH
Confidence            99988877665543222111  0100     1456678889999999998766789999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~  230 (374)
                      |.++|++||++||+||+|+|| +.|..+..+.+++.||+++|||++++|+ |+|++++++++++.+...   .++.++++
T Consensus       226 l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~iG~~~~~~~~~~~~~~~~~~~~~~t~~~  303 (429)
T 3k28_A          226 LREVTEQNGALLIFDEVMTGF-RVAYNCGQGYYGVTPDLTCLGKVIGGGL-PVGAYGGKAEIMRQVAPSGPIYQAGTLSG  303 (429)
T ss_dssp             HHHHHHHHTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHHHcCCEEEEecccccc-ccCcchHHHHhCCCCceehhhhhhcCCC-CeEEEEEcHHHHhhhccCCCccccCCCCC
Confidence            999999999999999999999 8887777777889999999999999998 999999999999988653   36678999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~  300 (374)
                      ++++++++.++++.+. +++.++++++++++++.|+++...+ +.+...++.|.++++.+....          ......
T Consensus       304 ~~~a~aaa~aal~~~~-~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (429)
T 3k28_A          304 NPLAMAAGYETLVQLT-PESYVEFERKAEMLEAGLRKAAEKH-GIPHHINRAGSMIGIFFTDEPVINYDAAKSSNLQFFA  381 (429)
T ss_dssp             CHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHHH
T ss_pred             ChHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhhC-CCCEEEEeeccEEEEEEecCCcccccccccccHHHHH
Confidence            9999999999999775 6789999999999999999987666 366678889999999874321          012357


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++++.|+++||.+++++.+.+|++  +..+++++++++++|+++++ ++
T Consensus       382 ~~~~~l~~~Gv~v~~~~~~~~r~~--~~~t~e~i~~~l~~l~~~l~-~~  427 (429)
T 3k28_A          382 AYYREMVEQGVFLPPSQFEGLFLS--TVHSDADIEATIAAAEIAMS-KL  427 (429)
T ss_dssp             HHHHHHHHTTEECCSSTTSCBCCC--TTCCHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHHHHHHCCeEEecCCCCCEEEE--CCCCHHHHHHHHHHHHHHHH-HH
Confidence            899999999999999877888886  78999999999999999998 65

>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics, center for structural genomics of infec diseases, csgid, porphyrin biosynthesis; 2.00A {Yersinia pestis}

Probab=100.00  E-value=1.2e-40  Score=317.24  Aligned_cols=330  Identities=25%  Similarity=0.377  Sum_probs=263.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+.  .++++...+++++|++.+ +.++++|++||++|++.|+++++.+.   .     +++|++++++|
T Consensus        76 ~A~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~sGsea~~~al~~a~~~~---~-----~~~ii~~~~~y  145 (429)
T 4e77_A           76 QAVIEAVERGLSF--GAPTEMEVKMAQLVTDLVPTMDMVRMVNSGTEATMSAIRLARGYT---G-----RDKIIKFEGCY  145 (429)
T ss_dssp             HHHHHHHTTCSCC--SSCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH---C-----CCEEEEETTCC
T ss_pred             HHHHHHHHhCccc--CCCCHHHHHHHHHHHhhCCCCCEEEEeCcHHHHHHHHHHHHHHhh---C-----CCEEEEEcCcc
Confidence            5677777665432  256788899999999987 68899999999999999999886431   2     38999999999


Q ss_pred             CCcccccccccCCccccc------cC-CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAIR------GF-GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~------~~-~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+.......+......      ++ ......+..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus       146 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~g~~~~~~~~l~~  225 (429)
T 4e77_A          146 HGHADCLLVKAGSGALTLGQPNSPGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVACIIVEPVAGNMNCIPPLPEFLPG  225 (429)
T ss_dssp             CC------------------CCCTTSCGGGGTTEEEECTTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHHH
T ss_pred             CCCChhhhhhcCCcccccCCCCcCCCCCccCCceeecCCCCHHHHHHHHHhcCCCEEEEEECCccCCCCCcCCCHHHHHH
Confidence            999875544333211110      00 01112355677889999999999876789999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~  230 (374)
                      |.++|++||++||+||+|+|| +.|..+..+.++..||++|+||++++|+ |+|++++++++++.+...   .+..+|++
T Consensus       226 l~~l~~~~~~lli~DEv~~g~-r~g~~~~~~~~~~~pdi~t~sK~~~~G~-~~G~~~~~~~~~~~l~~~~~~~~~~t~~~  303 (429)
T 4e77_A          226 LRALCDEFGALLIIDEVMTGF-RVALAGAQDYYHVIPDLTCLGKIIGGGM-PVGAFGGRREVMNALAPTGPVYQAGTLSG  303 (429)
T ss_dssp             HHHHHHHHTCEEEEEETTTBT-TTBTTCHHHHTTCCCSEEEEEGGGGTTS-CCEEEEECHHHHTTBTTTSSBCC--CCCC
T ss_pred             HHHHHHHcCCEEEEeccccCc-ccCcchHHHhcCCCCCeeeecccccCCC-CeEEEEECHHHHHHhccCCCccccCCCCC
Confidence            999999999999999999999 8888777788899999999999999998 999999999999988753   46778899


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----------chhH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----------PVSA  299 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----------~~~~  299 (374)
                      ++++++++.++++.++++++.++++++.+++++.|+++...+ +.....++.|.++++.++....           ....
T Consensus       304 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  382 (429)
T 4e77_A          304 NPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEE-NIPLVVNHVGGMFGLFFTNADTVTCYQDVMNCDVERF  382 (429)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEECCSSSCCCSHHHHHTSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEEeeeEEEEEEccCcccccccccccccHHHH
Confidence            999999999999998778899999999999999999887665 3666778889999998865310           1234


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++++.|+++||.+++++...+|++  ...+++++++++++|+++++
T Consensus       383 ~~~~~~l~~~Gi~v~~~~~~~~~~~--~~~t~e~i~~~l~~l~~~l~  427 (429)
T 4e77_A          383 KRFFHLMLEEGVYLAPSAFEAGFMS--LAHSNEDIQKTVNAARRCFA  427 (429)
T ss_dssp             HHHHHHHHHTTEECCSSTTSCEECC--TTCCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCeEEeecCCCCEEEe--ccCCHHHHHHHHHHHHHHHH
Confidence            7899999999999999876666654  88999999999999999987

>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold type I, subclass II, homodimer; HET: LLP; 1.71A {Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A* 1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A* 1dty_A*

Probab=100.00  E-value=1.8e-40  Score=316.04  Aligned_cols=334  Identities=28%  Similarity=0.466  Sum_probs=265.4

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHccccc---ccCCCCccEEEE
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVK---KKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~~~~~~vi~   75 (374)
                      +|+.+++++..+.. +.++.+...+++++|++++  +.+++++++||++|++.++++++.+. ..   +|     ++|++
T Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~ggtea~~~ai~~~~~~~-~~~g~~~-----~~vi~  139 (429)
T 1s0a_A           66 AAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-QAKGEAR-----QRFLT  139 (429)
T ss_dssp             HHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHHTCCC-----CEEEE
T ss_pred             HHHHHHHHhcccccccccCCHHHHHHHHHHHHhCCCCCCEEEEeCCHHHHHHHHHHHHHHHh-cccCCCC-----CeEEE
Confidence            56777776654332 2455677889999999988  67899999999999999999875431 11   24     89999


Q ss_pred             eccCCCCcccccccccCCcc-ccccCCCCCCCceeccC-----------CCHHHHHHHHHhcCCcEEEEEEccc-cCCCC
Q 017259           76 CCGCFHGRTLAAISMSCDNE-AIRGFGPLLPGHLKVDF-----------GDITALEKIFKESGDQIAGFLFEPI-QGEAG  142 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~-----------~d~~~le~~l~~~~~~~~~vi~~~~-~~~~g  142 (374)
                      ++|+||+....+..+++... +...+.+...++..++.           .|+++|+++++++++++++++++|+ +|++|
T Consensus       140 ~~~~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~vi~~p~~~n~tG  219 (429)
T 1s0a_A          140 FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGG  219 (429)
T ss_dssp             ETTCCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTT
T ss_pred             ECCCCCCCchhhhhhcCCchhhcccccCCCCCceEeCCCcccccccchHHHHHHHHHHHHhCCCCEEEEEEeecccCCCC
Confidence            99999998776655544221 22223222222222221           3789999999865567999999998 88999


Q ss_pred             cccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhheeCHHHHhhcCC
Q 017259          143 VIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       143 ~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~~~~~~~~~~~  221 (374)
                      .+.++++++++|.++|++||++||+||+|++|++.|..+..+..+..+|++++||++++| + |+|++++++++++.+..
T Consensus       220 ~~~~~~~~l~~i~~l~~~~~~~li~De~~~~~g~~g~~~~~~~~~~~~d~~t~sK~l~~G~~-~iG~~~~~~~~~~~l~~  298 (429)
T 1s0a_A          220 MRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTM-TLSATLTTREVAETISN  298 (429)
T ss_dssp             CEEBCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSS-CCEEEEECHHHHHHHHT
T ss_pred             cccCCHHHHHHHHHHHHHcCCEEEEeehhhCCcccchHHHhhhcCCCCCEEEecccccCCCc-cceEEEeCHHHHHHhhc
Confidence            888899999999999999999999999999998877766666677889999999999999 8 99999999998888765


Q ss_pred             C-----CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259          222 G-----EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP  296 (374)
Q Consensus       222 ~-----~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  296 (374)
                      .     ....++++++++++++.++++.+.++++.++++++++++++.|+++.. +| .+...++.|.++++.++...  
T Consensus       299 ~~~~~~~~~~t~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~-~~-~~~~~~~~g~~~~~~~~~~~--  374 (429)
T 1s0a_A          299 GEAGCFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-AE-MVADVRVLGAIGVVETTHPV--  374 (429)
T ss_dssp             STTSSCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-CT-TEEEEEEETTEEEEEESSCB--
T ss_pred             CCCcccccCCCCCCCHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHhc-CC-CEEEEEEeeEEEEEEECCcc--
Confidence            3     245688899999999999999887777889999999999998877533 43 34456677889999886532  


Q ss_pred             hhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          297 VSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       297 ~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       +..++.+.|+++||.+++. ++++||++++..+++++++++++|+++++ ++
T Consensus       375 -~~~~l~~~l~~~Gi~v~~~-~~~iRis~~~~~t~e~i~~~~~~l~~~~~-~~  424 (429)
T 1s0a_A          375 -NMAALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ-DE  424 (429)
T ss_dssp             -CHHHHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHTS-SG
T ss_pred             -cHHHHHHHHHHCCCEEecc-CCEEEEECCCCCCHHHHHHHHHHHHHHHH-hh
Confidence             5778999999999999986 48999999999999999999999999887 54

>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance, microev0lution, integrated approach, chlorophyll biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus pcc 6301} SCOP: c.67.1.4 PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A* 3usf_A* 2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*

Probab=100.00  E-value=2.5e-40  Score=314.78  Aligned_cols=329  Identities=26%  Similarity=0.385  Sum_probs=272.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.++.  ++.+...+++++|++.+ +.+++++++||++|++.|+++++.+.    |    +++|++++++|
T Consensus        75 ~a~~~~~~~~~~~~--~~~~~~~~la~~l~~~~~~~~~v~~~~ggsea~~~al~~a~~~~----~----~~~vi~~~~~y  144 (427)
T 3fq8_A           75 EALKVAMEKGTSFG--APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRIMRAYT----G----RDKIIKFEGCY  144 (427)
T ss_dssp             HHHHHHHTTCSCCS--SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH----C----CCEEEEEETCC
T ss_pred             HHHHHHHHhCCCcC--CCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh----C----CCEEEEECCCc
Confidence            56777777665432  46788899999999987 67899999999999999999886431    2    27899999999


Q ss_pred             CCcccccccccCCccccccCCCCC--------CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLL--------PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      ||.+..+....+.+...... |..        .++..++++|+++|+++++++++++++++++|+++++|.+.+++++++
T Consensus       145 hg~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~p~~~~~G~~~~~~~~l~  223 (427)
T 3fq8_A          145 HGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLE  223 (427)
T ss_dssp             CCSCGGGCSSCCTHHHHHTC-CSCSSSCHHHHTTEEEEETTCHHHHHHHHHHSTTTEEEEEECSSBCTTSCBCCCTTHHH
T ss_pred             CCCCHHHHHhcCCcccccCC-CCCCCCCCcccCceeecCCCCHHHHHHHHHhCCCCEEEEEEcCCcCCCCCcCCCHHHHH
Confidence            99988777666544332111 111        135667888999999999987678999999999999999999999999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFG  229 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~  229 (374)
                      +|.++|++||++||+||+|+|| +.|..+..+.++..||+.|+||++++|+ |+|++++++++++.+...   .+..+++
T Consensus       224 ~l~~l~~~~~~~li~DEv~~g~-~~g~~~~~~~~~~~~di~t~sK~~~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~  301 (427)
T 3fq8_A          224 GLREITLEHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLS  301 (427)
T ss_dssp             HHHHHHHHTTCEEEEECTTTBT-TTBTTHHHHHTTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTT
T ss_pred             HHHHHHHHcCCEEEEecccccc-ccCcchhhHhcCCCCChhhhhhhhhCCc-ceEEEEEcHHHHHhhccCCCccccCCCC
Confidence            9999999999999999999999 8887777778889999999999999998 999999999999988753   3677889


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhH
Q 017259          230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSA  299 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~  299 (374)
                      +++++++++.++++.+.++++.++++++.+++++.|+++...+ +.....++.|.++++.+.....          ....
T Consensus       302 ~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  380 (427)
T 3fq8_A          302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQET-GHAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKF  380 (427)
T ss_dssp             TCHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHH
T ss_pred             cCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhC-CCCeEEEEeeeEEEEEEecCccccccccccccHHHH
Confidence            9999999999999988778899999999999999999987665 3555677889999998854321          1125


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++++.|+++||.+++.+..  |+.++...+++++++++++|+++++
T Consensus       381 ~~l~~~l~~~Gi~v~~~~~~--r~~~~~~~t~e~i~~~l~~l~~~l~  425 (427)
T 3fq8_A          381 SRFHRGMLEQGIYLAPSQFE--AGFTSLAHTEEDIDATLAAARTVMS  425 (427)
T ss_dssp             HHHHHHHHHTTEECCSSTTS--CEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCcEEecCCCC--CEEeeCcCCHHHHHHHHHHHHHHHH
Confidence            68999999999999998655  5555688999999999999999987

>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine aminotransferase (EC 2.6.1.11) (ACOA structural genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8} PDB: 2e54_A*

Probab=100.00  E-value=3.7e-40  Score=310.62  Aligned_cols=333  Identities=33%  Similarity=0.608  Sum_probs=270.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++++..+....++.+...+++++|++++|.+++++++||++|++.++++++.+. .. | .+++++|++++++||
T Consensus        63 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~g~~~v~~~~gg~~a~~~al~~~~~~~-~~-~-~~~~~~vi~~~~~yh  139 (397)
T 2ord_A           63 EAIKDQAEKLIHCSNLFWNRPQMELAELLSKNTFGGKVFFANTGTEANEAAIKIARKYG-KK-K-SEKKYRILSAHNSFH  139 (397)
T ss_dssp             HHHHHHHHHCSCCCTTSEEHHHHHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHH-HH-H-CTTCCEEEEEBTCCC
T ss_pred             HHHHHHHHhcccCccccCCHHHHHHHHHHHHhcCCCeEEEeCCHHHHHHHHHHHHHHHh-hc-C-CCCCceEEEEcCCcC
Confidence            56777776655543345567889999999999999999999999999999999885321 00 0 012378999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      +....+....+...+..++.|...++..++++|+++|+++++   ++++++++++++|++|.+.++.+.+++|.++|++|
T Consensus       140 ~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~~~~~l~~l~~l~~~~  216 (397)
T 2ord_A          140 GRTLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMS---EDVCAVFLEPIQGESGIVPATKEFLEEARKLCDEY  216 (397)
T ss_dssp             CSSHHHHHHSBCHHHHGGGCSCCTTEEEECTTCHHHHHHHCC---TTEEEEEECSEECTTTCEECCHHHHHHHHHHHHHH
T ss_pred             CCchhhhhccCChhhccccCCCCCCeeEecCCCHHHHHHHhh---cCeEEEEEecccCCCCcccCCHHHHHHHHHHHHHc
Confidence            987755555444434445556666677788889999999887   57999999999999998566899999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |++||+||+|+++++.|..+....++..+|++||||.+++|+ |+|++++++++. .+.......+++.++++++++.++
T Consensus       217 ~~~li~De~~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~-r~G~~~~~~~~~-~l~~~~~~~~~~~~~~~~~a~~~~  294 (397)
T 2ord_A          217 DALLVFDEVQCGMGRTGKLFAYQKYGVVPDVLTTAKGLGGGV-PIGAVIVNERAN-VLEPGDHGTTFGGNPLACRAGVTV  294 (397)
T ss_dssp             TCEEEEECTTTTTTTTSSSSHHHHHTCCCSEEEECGGGGTTS-CCEEEEECSTTC-CCCTTSSCCSSTTCHHHHHHHHHH
T ss_pred             CCEEEEEecccCCccCccchhhhhhCCCCCeeeeccccCCCc-CeEEEEEchHhc-ccCCCCcCCCCCCCHHHHHHHHHH
Confidence            999999999998877776555455566789999999999999 999999988877 766545667888999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      ++.+.++++.++++++++++.+.|+++...++ .+...++.|.++++.++...   +..++.+.|.++||.+.+++.+++
T Consensus       295 l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~i  370 (397)
T 2ord_A          295 IKELTKEGFLEEVEEKGNYLMKKLQEMKEEYD-VVADVRGMGLMIGIQFREEV---SNREVATKCFENKLLVVPAGNNTI  370 (397)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHHHCT-TEEEEEEETTEEEEEECTTS---CHHHHHHHHHHTTEECEEETTTEE
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHhCC-ceEEEEEEeEEEEEEECChH---HHHHHHHHHHHCCCEEccCCCCEE
Confidence            99887677899999999999999988753443 44445677889998886533   578899999999999999878899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++++..+++++++++++|+++++
T Consensus       371 Ris~~~~~~~e~i~~~~~~l~~~l~  395 (397)
T 2ord_A          371 RFLPPLTVEYGEIDLAVETLKKVLQ  395 (397)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCcCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999887

>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural genomics, NPPSFA, N project on protein structural and functional analyses; HET: PLP; 1.90A {Sulfolobus tokodaii}

Probab=100.00  E-value=2.5e-40  Score=313.94  Aligned_cols=323  Identities=34%  Similarity=0.604  Sum_probs=254.4

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++++..+++ +.++.+...+++++|+++++   .+++++++||++|++.++++++.+    .|     ++|++++
T Consensus        66 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~gg~ea~~~ai~~~~~~----~~-----~~vi~~~  136 (419)
T 2eo5_A           66 KIGIEQMQKLAHAAANDFYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT----GR-----KYIIAFL  136 (419)
T ss_dssp             HHHHHHHTTSCCCSCSCSCCHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHTT----SC-----CEEEEET
T ss_pred             HHHHHHHhhCccccccccCCHHHHHHHHHHHHhCCCCcCCEEEEeCchHHHHHHHHHHHHHh----hC-----CcEEEEC
Confidence            56677776654433 34667778999999999886   458999999999999999988632    25     8999999


Q ss_pred             cCCCCcccccccccCCc-cccccCCCCCCCceeccCC---------------------CHHHHH-HHHHhcC--CcEEEE
Q 017259           78 GCFHGRTLAAISMSCDN-EAIRGFGPLLPGHLKVDFG---------------------DITALE-KIFKESG--DQIAGF  132 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~---------------------d~~~le-~~l~~~~--~~~~~v  132 (374)
                      |+||+.+..+..+++.. .+..++.+...++..++++                     |+++|+ ++++++.  ++++++
T Consensus       137 p~yh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~g~~~~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~v  216 (419)
T 2eo5_A          137 GGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRVIEFIEDYIFVNLVPPEEVAGI  216 (419)
T ss_dssp             TCCCCSSHHHHHHCCSCGGGGCSSCCCCTTEEEECCCCSSSCTTCCCTTTCHHHHHHHHHHHHHHTHHHHTCCGGGEEEE
T ss_pred             CCcCCCCHhhHhhcCCccccccccCCCCCCCEEECCCccccccccccccccchhhHHHHHHHHHHHHHhhccCCCCEEEE
Confidence            99999988777666543 3444444444455555543                     257888 8887531  478999


Q ss_pred             EEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCC-ccchhhhee
Q 017259          133 LFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG-VIPVSAVLA  211 (374)
Q Consensus       133 i~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G-~~~~G~~~~  211 (374)
                      +++|++|++|.+.++++++++|.++|++||++||+||+|++|++.|..+.....+..+|++||||++++| + |+||+++
T Consensus       217 i~~p~~~~tG~~~~~~~~l~~l~~l~~~~~~~li~DE~~~~~g~~g~~~~~~~~~~~~d~~t~sK~~~~G~~-riG~~~~  295 (419)
T 2eo5_A          217 FFEPIQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIM-PIGATIF  295 (419)
T ss_dssp             EECSSBTTTTSBCCCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTTS-CCEEEEE
T ss_pred             EEeCccCCCCCccCCHHHHHHHHHHHHHcCCEEEEeccccCCccCcchhhHHhcCCCCCEEEecccccCCcc-ceEEEEE
Confidence            9999888889888899999999999999999999999999998888766666678889999999999999 8 9999999


Q ss_pred             CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec
Q 017259          212 DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~  291 (374)
                      +++++ .+ ...+..+++.++++++++.++++.+.+  +.++++++++++.+.|+++       +...++.|+++++.+.
T Consensus       296 ~~~~~-~~-~~~~~~t~~~n~~~~~aa~aal~~~~~--~~~~~~~~~~~l~~~L~~~-------~~~~~~~g~~~~i~~~  364 (419)
T 2eo5_A          296 RKDLD-FK-PGMHSNTFGGNALACAIGSKVIDIVKD--LLPHVNEIGKIFAEELQGL-------ADDVRGIGLAWGLEYN  364 (419)
T ss_dssp             EGGGC-CC-------CCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTTS-------SSEEEEETTEEEEECS
T ss_pred             chHhh-cC-CcccCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHh-------hhheEeeeEEEEEEEe
Confidence            98887 66 445667899999999999999987643  7788888888888777553       2235678899988873


Q ss_pred             cCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          292 KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...  .... +.+.|+++||.+++++.+++||++++..+++++++++++|+++++ ++
T Consensus       365 ~~~--~~~~-~~~~l~~~Gv~v~~~~~~~lRis~~~~~t~e~i~~~l~~l~~~l~-~~  418 (419)
T 2eo5_A          365 EKK--VRDR-IIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDILKKVIK-VV  418 (419)
T ss_dssp             CHH--HHHH-HHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             cCc--cHHH-HHHHHHHCCCEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence            210  1355 999999999999998778999999999999999999999999987 53

>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum pernix} PDB: 2zsl_A* 2zsm_A*

Probab=100.00  E-value=1.7e-39  Score=309.69  Aligned_cols=332  Identities=25%  Similarity=0.385  Sum_probs=263.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.+  ..++.+...+++++|++++ +.+++++++||++|++.++++++.+.   ++     ++|++++++|
T Consensus        79 ~a~~~~~~~~~~--~~~~~~~~~~l~~~la~~~~~~~~v~~~~sgseA~~~al~~ar~~~---~~-----~~vi~~~~~y  148 (434)
T 2epj_A           79 EAVEEALARGWL--YGAPGEAEVLLAEKILGYVKRGGMIRFVNSGTEATMTAIRLARGYT---GR-----DLILKFDGCY  148 (434)
T ss_dssp             HHHHHHHHTCSC--CSSCCHHHHHHHHHHHHHHCTTCEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEEETCC
T ss_pred             HHHHHHHHhCCC--CCCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---CC-----CeEEEEcCCc
Confidence            567777776532  2356778899999999988 88999999999999999999865321   23     7899999999


Q ss_pred             CCcccccccccCCccccc--cC-CCC----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAIR--GF-GPL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~--~~-~~~----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+....+......  .. ...    ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus       149 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  228 (434)
T 2epj_A          149 HGSHDAVLVAAGSAAAHYGVPTSAGVPEAVARLTLVTPYNDVEALERVFAEYGDRIAGVIVEPVIANAGVIPPRREFLAA  228 (434)
T ss_dssp             CCSSGGGSEECC------CEESSTTCCHHHHTTEEEEETTCHHHHHHHHHHHGGGEEEEEECSSBCSSSCBCCCHHHHHH
T ss_pred             CCCCHHHHHhcCCCccccCCCCCCCCCCcccCceEecCCCCHHHHHHHHHhCCCCEEEEEEeCCcCCCCccCCCHHHHHH
Confidence            998876655443211000  00 000    02355667789999999998654579999999999889988989999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~  230 (374)
                      |.++|++||++||+||+|+|+ +.|..+..+.+++.||++||||++++|+ |+|++++++++++.+...   .+..+|++
T Consensus       229 l~~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~t~~~  306 (434)
T 2epj_A          229 LQRLSRESGALLILDEVVTGF-RLGLEGAQGYFNIEGDIIVLGKIIGGGF-PVGAVAGSREVMSLLTPQGKVFNAGTFNA  306 (434)
T ss_dssp             HHHHHHHHTCEEEEEETTTTT-TSSTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHHHcCCEEEEEcchhce-eCCcchhhHHhCCCCCeeeecchhcCCc-ceeeeeecHHHHHhhccCCCcccCCCCCc
Confidence            999999999999999999998 6676666667788899999999999998 999999999999888762   35678899


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~  300 (374)
                      ++++++++.++++.+.++++.++++++++++++.|+++...+ +.....++.|.++++.++...          ......
T Consensus       307 ~~~~~aa~~a~l~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~~  385 (434)
T 2epj_A          307 HPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRT-GLPYTINRVESMMQLFIGVEEVSNAAQARKADKKFYV  385 (434)
T ss_dssp             CHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHH-TCCEEEEEETTEEEEEETCSCCSSHHHHTTSCHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhC-CCcEEEEEeeeEEEEEEeCCCcccchhccccCHHHHH
Confidence            999999999999988777899999999999999998875443 354456788999999886411          012467


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++.+.|+++||.+.++....+|+  ++..+++++++++++|+++++ ++
T Consensus       386 ~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~e~i~~~l~~l~~~l~-~~  431 (434)
T 2epj_A          386 KLHEEMLRRGVFIAPSNLEAVFT--GLPHQGEALEIAVEGLRSSLK-TV  431 (434)
T ss_dssp             HHHHHHHHTTEECCSSTTSCEEC--CTTCSHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHCCeEEeccCCCcEEE--eccCCHHHHHHHHHHHHHHHH-HH
Confidence            89999999999999986555554  478999999999999999987 54

>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A {Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A* 1szu_A* 1szs_A*

Probab=100.00  E-value=1e-38  Score=303.42  Aligned_cols=337  Identities=28%  Similarity=0.546  Sum_probs=264.5

Q ss_pred             hHHHHHHHhccccC-cCCCCCcHHHHHHHHhccc-C-C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSS-RAFYNDKFPVFAERLTSMF-G-Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-~~~~~~~~~~l~~~l~~~~-~-~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++++..+.. .+++.+...++++.|++++ + . +++++++||++|++.++++++..  ..+      ++|++.+
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~a~~~--~~~------~~vi~~~  135 (426)
T 1sff_A           64 AAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA--TKR------SGTIAFS  135 (426)
T ss_dssp             HHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHH--HTC------CEEEEET
T ss_pred             HHHHHHHHhCCCccccccCCHHHHHHHHHHHHhCCcccccEEEEeCchHHHHHHHHHHHHHh--hCC------CeEEEEC
Confidence            45555554443322 3455778889999999988 5 4 78999999999999999954322  111      5799999


Q ss_pred             cCCCCcccccccccCC-ccccccCCCCCCCceeccCC----------CHHHHHHHHHh--cCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCD-NEAIRGFGPLLPGHLKVDFG----------DITALEKIFKE--SGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~----------d~~~le~~l~~--~~~~~~~vi~~~~~~~~g~~  144 (374)
                      |+||+....+..+.+. ..++..+.+...++..++++          |+++|++++++  +++++++++++|+++++|.+
T Consensus       136 p~y~~~~~~~~~~~g~~~~~~~~~~~~~~~v~~v~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~p~~~ntG~~  215 (426)
T 1sff_A          136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY  215 (426)
T ss_dssp             TCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSC
T ss_pred             CCcCCCchHhhhhcCCccccccccCCCCCCcEEeCCCccccccchHHHHHHHHHHHHhccCCCceEEEEEecccCCCCcc
Confidence            9999988765554432 12223333333334444442          57889988874  12478999999987778878


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .++++++++|.++|++||++||+||+|++|++.|..+..+..+..+|+.||||++++|+ |+||+++++++++.+.....
T Consensus       216 ~~~~~~l~~l~~l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~di~s~sK~~~~Gl-riG~~~~~~~~~~~l~~~~~  294 (426)
T 1sff_A          216 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL  294 (426)
T ss_dssp             BCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSB
T ss_pred             cCCHHHHHHHHHHHHHcCCEEEEechhhccCcccchhhhhhcCCCCCEEEEcccccCCC-ceEEEEEcHHHHhhhccCCc
Confidence            88999999999999999999999999999988777666666777899999999999998 99999999999888876556


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC-----CCchhH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT-----ALPVSA  299 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~-----~~~~~~  299 (374)
                      ..+++.++++++++.++++.+.++++.+++++++++++++|+.+...++ .+...++.|.++|+.++..     ..+.+.
T Consensus       295 ~~~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  373 (426)
T 1sff_A          295 GGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLT  373 (426)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCC-CeEEEEEEEEEEEEEEecCccccCCChHHH
Confidence            7788999999999999999887778899999999999999988765553 4555567799999988431     001256


Q ss_pred             HHHHHHHHHCCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          300 YDICLKMKERGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++.+.|.++||.+.++.  .+++||++++..+++++++++++|+++++ ++
T Consensus       374 ~~l~~~l~~~gi~v~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~-~~  424 (426)
T 1sff_A          374 AEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD-EA  424 (426)
T ss_dssp             HHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHCCcEEecCCCCCCEEEEECCccCCHHHHHHHHHHHHHHHH-HH
Confidence            789999999999999875  68999999989999999999999999987 54

>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN acid, antiepileptic drug target; HET: PLP; 2.3A {Sus scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*

Probab=100.00  E-value=7.6e-39  Score=307.74  Aligned_cols=318  Identities=22%  Similarity=0.372  Sum_probs=249.0

Q ss_pred             CCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccc-cccC---------------CCC--ccEEEEeccC
Q 017259           20 NDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYV-KKKF---------------SID--EAIIVSCCGC   79 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~-~~G~---------------~~~--~~~vi~~~~~   79 (374)
                      .++.+.++++|++++  +.++++|++||++|++.|+++++.++.. .+|.               .++  +++||+++++
T Consensus       109 ~~l~~~la~~l~~~~~~~~~~v~f~~sGseA~~~Aik~a~~~~~~~~~~~~~~t~~~~~~~~~~~~~g~~r~~ii~~~~~  188 (472)
T 1ohv_A          109 ENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGA  188 (472)
T ss_dssp             TTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHHHHHHHTTCTTTSCCCEEEEETTC
T ss_pred             HHHHHHHHHHHHHhCCCCcCEEEEeCCchhHHHHHHHHHHHHhhhhccCcccccccccccccccccccCCCCeEEEECCC
Confidence            445566777677766  6789999999999999999999754210 0110               123  4899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCcee-------cc------CC------CHHHHHHHHHhcCC---cEEEEEEccc
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLK-------VD------FG------DITALEKIFKESGD---QIAGFLFEPI  137 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~------~~------d~~~le~~l~~~~~---~~~~vi~~~~  137 (374)
                      |||.+..+..+++...++....+.. ++..       .+      ++      |+++|+++|+++.+   ++++|+++|+
T Consensus       189 yHg~~~~~~~~~g~~~~~~~~~~~~-~~~~~~~p~~~~~~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~vive~v  267 (472)
T 1ohv_A          189 FHGRTMGCLATTHSKAIHKIDIPSF-DWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEPI  267 (472)
T ss_dssp             CCCSSHHHHHHCCSCHHHHTTSCCC-CCCEECCCCCCSSGGGCHHHHHHHHHHHHHHHHHHHHHHHHTTCCEEEEEECSS
T ss_pred             cccccHHHHhcCCCccccccCCCCC-CCcccCCCcccCccccccccchhHHHHHHHHHHHHHHhcCCCCCCEEEEEEcCC
Confidence            9999998887776543321111110 0000       01      11      57889999885322   7999999999


Q ss_pred             cCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCC--CcEEEeccc-ccCCccchhhheeCHH
Q 017259          138 QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVR--PDMVILGKA-LGGGVIPVSAVLADKE  214 (374)
Q Consensus       138 ~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~--~d~~s~sK~-~~~G~~~~G~~~~~~~  214 (374)
                      ++++|.+.++++++++|.++|++||++||+||+|+|+++.|..++...+++.  ||+++|||+ ++||+     ++ +++
T Consensus       268 ~~~~G~~~~~~~~l~~l~~l~~~~g~lli~DEv~~g~g~~g~~~~~~~~gv~~~~Di~t~sK~~l~GG~-----~~-~~~  341 (472)
T 1ohv_A          268 QSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGF-----FH-KEE  341 (472)
T ss_dssp             BCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTTTTTTSSSSGGGGGCCSSCCSEEEECGGGSSEEE-----EE-CGG
T ss_pred             cCCCCCCCCCHHHHHHHHHHHHHhCCEEEEeCcccCCCCCCCchhccccCCCCCCCEEEEccccccCCc-----cC-chh
Confidence            9999999999999999999999999999999999999988877777777776  999999999 77776     23 555


Q ss_pred             HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC
Q 017259          215 VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA  294 (374)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  294 (374)
                      + ..+....+..|+++++++++++.++++.+.++++.++++++++++++.|+++...+|..+...++.|.++++++++..
T Consensus       342 ~-~~~~~~~~~~T~~~~~~~~aaa~aal~~~~~~~~~~~~~~~~~~l~~~L~~l~~~~~~~v~~~~~~g~~~~~~~~~~~  420 (472)
T 1ohv_A          342 F-RPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDES  420 (472)
T ss_dssp             G-SCSSSSSSCCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCTTTCEEEEEETTEEEEECSSHH
T ss_pred             h-cccccccccCccCccHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHhhCCCcEEeecCCceEEEEEeCChh
Confidence            4 334455577889999999999999999987778999999999999999998765554335567788999998775421


Q ss_pred             CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                         ...++++.|+++||.+.+.+.+++|++|++.++++++++++++|+++++ ++
T Consensus       421 ---~~~~~~~~l~~~Gv~~~~~g~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~  471 (472)
T 1ohv_A          421 ---IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA-DF  471 (472)
T ss_dssp             ---HHHHHHHHHHHTTEECEEETTTEEEECCCTTCCHHHHHHHHHHHHHHHH-TC
T ss_pred             ---HHHHHHHHHHHCCeEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-hc
Confidence               4678999999999999987678999999999999999999999999987 54

>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA, structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus thermophilus}

Probab=100.00  E-value=1.7e-38  Score=301.92  Aligned_cols=328  Identities=26%  Similarity=0.404  Sum_probs=260.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.++  .++.+...+++++|++++ +.+++++++||++|++.++++++.+.   ++     ++|++++|+|
T Consensus        75 ~a~~~~~~~~~~~--~~~~~~~~~l~~~l~~~~~~~~~v~~~~~g~ea~~~al~~ar~~~---~~-----~~vi~~~~~y  144 (424)
T 2e7u_A           75 ARVRETLERGLTF--GAPSPLEVALAKKVKRAYPFVDLVRFVNSGTEATMSALRLARGYT---GR-----PYIVKFRGNY  144 (424)
T ss_dssp             HHHHHHHHTCSCC--SSCCHHHHHHHHHHHHHCTTCCEEEEESSHHHHHHHHHHHHHHHH---CC-----CEEEEETTCC
T ss_pred             HHHHHHHHhCCCC--CCCCHHHHHHHHHHHHhCCCCCEEEEeCCHHHHHHHHHHHHHHhh---CC-----CEEEEECCCc
Confidence            5677777765332  256778899999999988 78999999999999999999865331   22     7899999999


Q ss_pred             CCcccccccccCCcccc--ccCC-CC----CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAI--RGFG-PL----LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~--~~~~-~~----~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+....+.....  .... ..    ..++..++++|+++|+++++++++++++++++|+++++|.+.++++++++
T Consensus       145 hg~~~~~~~~~~~~~~~~~~p~~~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~~G~~~~~~~~l~~  224 (424)
T 2e7u_A          145 HGHADGLLVEAGSGALTLGVPSSAGVPEEYAKLTLVLEYNDPEGLREVLKRRGEEIAAIIFEPVVGNAGVLVPTEDFLKA  224 (424)
T ss_dssp             CCCCGGGSEECCSSSCCBCEESSTTCCHHHHTTEEEECTTCHHHHHHHHHHHGGGEEEEEECSSBCTTSCBCCCHHHHHH
T ss_pred             CCCcHHHHHhcCCcccccCCCCCCCCCCccCCceEeCCCCCHHHHHHHHHhCCCCEEEEEEeCCCCCCCCcCCCHHHHHH
Confidence            99887665443321100  0000 00    02355667789999999998654579999999998889988889999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---CCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---EHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---~~~~~~~~  230 (374)
                      |.++ ++||++||+||+|+|+ +.|..+..+.++..||++||||++++|+ |+|++++++++++.+...   .+..+|++
T Consensus       225 l~~l-~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~~~~~~~~~~~~~~~~~~~~~~t~~~  301 (424)
T 2e7u_A          225 LHEA-KAYGVLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGKILGGGL-PAAAYAGRREIMEKVAPLGPVYQAGTLSG  301 (424)
T ss_dssp             HHHG-GGGTCEEEEECTTTTT-TSSTTHHHHHHTCCCSEEEECGGGGTTS-SCEEEEECHHHHTTBTTTSSBCCCCTTCS
T ss_pred             HHHH-HHcCCEEEEecCcccc-ccchhHHHHHhCCCcchhhhhhhhhCCc-ceEEEEEcHHHHhhhcccCCcccCCCCCC
Confidence            9999 9999999999999998 6676666666788899999999999998 999999999999988762   25678899


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhH
Q 017259          231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSA  299 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~  299 (374)
                      ++++++++.++++.+.+ +++.++++++++++++.|+++...+ +.....++.|.++++.++...          .....
T Consensus       302 ~~~~~aaa~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~  380 (424)
T 2e7u_A          302 NPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEK-GLPHTVNRVGSMITVFFTEGPVVTFQDARRTDTELF  380 (424)
T ss_dssp             CHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHT-TCCCEEEEETTEEEEESSSSCCCSHHHHTTSCHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHhC-CCceEEEeeceEEEEEEeCCCCcchhhhcccCHHHH
Confidence            99999999999998877 7889999999999999999876555 354456788999999886411          01236


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .++.+.|+++||.+.++....+|+  ++..+++++++++++|++++
T Consensus       381 ~~~~~~l~~~Gv~v~~~~~~~~~~--~~~~t~~~i~~~l~~l~~~l  424 (424)
T 2e7u_A          381 KRFFHGLLDRGIYWPPSNFEAAFL--SVAHREEDVEKTLEALRKAL  424 (424)
T ss_dssp             HHHHHHHHTTTEECCSSSSSCEEC--CTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHCCeEEeccCCCceEe--eccCCHHHHHHHHHHHHHhC
Confidence            689999999999999986555554  48899999999999998763

>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: PLP; 1.35A {Thermus thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*

Probab=100.00  E-value=9.2e-39  Score=300.84  Aligned_cols=325  Identities=33%  Similarity=0.548  Sum_probs=262.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+++++..+..+.++.+...++++++++++  +.+++++++||++|++.++++++.+   .+|     ++|++.+++
T Consensus        68 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~~v~~~~gg~~a~~~al~~~~~~---~~~-----~~vi~~~~~  139 (395)
T 1vef_A           68 EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH---TGR-----KKFVAAMRG  139 (395)
T ss_dssp             HHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHH---HSC-----CEEEEETTC
T ss_pred             HHHHHHHHhCCCCccccCCHHHHHHHHHHHHhcCCCcCEEEEcCcHHHHHHHHHHHHHHH---hCC-----CeEEEEcCC
Confidence            566777766554444456788899999999998  6678999999999999999987421   235     889999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      ||+....+....+......++.|...++..+++.|+++++++++   +++++++++|+++++|.+.++++++++|.++|+
T Consensus       140 y~~~~~~~~~~~g~~~~~~~~~p~~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~l~~  216 (395)
T 1vef_A          140 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQ  216 (395)
T ss_dssp             CCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred             cCCCchhhhhhcCCcccccccCCCCCCeeEeCCCcHHHHHHHhc---cCEEEEEEeCccCCCCccCCCHHHHHHHHHHHH
Confidence            99987665555443333334445555566667779999999887   479999999998889988889999999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      +||++||+||+|+++++.|..+..+..+..+|++||||++++|+ |+|++++++++.+.+.......+++.++++++++.
T Consensus       217 ~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~  295 (395)
T 1vef_A          217 EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGV  295 (395)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHH
T ss_pred             HcCCEEEEEecccCCccCCchhHhhhcCCCCCEEEEcccccCCC-ceEEEEehHHHHhhhccCCcCCCcCCCHHHHHHHH
Confidence            99999999999998877776555555667789999999999998 99999999888888876556678889999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCCC
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHD  318 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~  318 (374)
                      ++++.+..+++.++++++.+++.+.|+++..   +.+...++.|.++++.++..     ..++.+.|. ++||.+++.+.
T Consensus       296 ~al~~~~~~~~~~~~~~~~~~l~~~l~~~~~---~~~~~~~~~g~~~~~~~~~~-----~~~l~~~l~~~~gi~v~~~~~  367 (395)
T 1vef_A          296 AAIRYLERTRLWERAAELGPWFMEKLRAIPS---PKIREVRGMGLMVGLELKEK-----AAPYIARLEKEHRVLALQAGP  367 (395)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC---TTEEEEEEETTEEEEEESSC-----SHHHHHHHHHHHCEECEESST
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHhhc---CceEEEEEEEEEEEEEEcCh-----HHHHHHHHHHHCCeEEecCCC
Confidence            9999876667788888888888888876421   13334556788899888642     578999999 99999999878


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++||+++...+++++++++++|+++++
T Consensus       368 ~~iRi~~~~~~~~~~i~~~~~~l~~~l~  395 (395)
T 1vef_A          368 TVIRFLPPLVIEKEDLERVVEAVRAVLA  395 (395)
T ss_dssp             TEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEeCCCCCCHHHHHHHHHHHHHHhC
Confidence            9999999889999999999999998763

>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics, NPPSFA, national project on prote structural and functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}

Probab=100.00  E-value=8.3e-38  Score=292.18  Aligned_cols=324  Identities=35%  Similarity=0.616  Sum_probs=258.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +++.+++.+..+....|+.+...+++++|++++|. +++++++||++|++.++++++..  ...+ ++++++|++.+++|
T Consensus        51 ~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~~g~~~~v~~~~g~t~a~~~~~~~~~~~--~~~~-~~g~~~vl~~~~~y  127 (375)
T 2eh6_A           51 EALKEQVEKLLHVSNLYENPWQEELAHKLVKHFWTEGKVFFANSGTESVEAAIKLARKY--WRDK-GKNKWKFISFENSF  127 (375)
T ss_dssp             HHHHHHHHHCSCCCTTBCCHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHH--HHHT-TCCCCEEEEEBTCC
T ss_pred             HHHHHHHHhccccCcccCCHHHHHHHHHHHhhcCCCCeEEEeCchHHHHHHHHHHHHHH--hccC-CCCCCEEEEECCCc
Confidence            45666665543333345566788999999999988 89999999999999999875321  2001 22348999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      |+....+....+...+..++.+...++..+++.|+++|+++++   ++++++++++++|++|.+.++++++++|.++|++
T Consensus       128 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~~~tG~~~~~~~~l~~i~~~~~~  204 (375)
T 2eh6_A          128 HGRTYGSLSATGQPKFHKGFEPLVPGFSYAKLNDIDSVYKLLD---EETAGIIIEVIQGEGGVNEASEDFLSKLQEICKE  204 (375)
T ss_dssp             CCSSHHHHHHCBCGGGTTTTCSCCSSEEEECTTCHHHHHTTCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHHH
T ss_pred             CCCchhhhhhcCCccccCCCCCCCCCceeCCCchHHHHHHHhc---CCeEEEEEeCccCCCCCcCCCHHHHHHHHHHHHH
Confidence            9988777666555444444555555667777789999998886   4799999999999999998899999999999999


Q ss_pred             cCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHH
Q 017259          161 YNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA  240 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~  240 (374)
                      ||+++|+||+|+++++.+..+....++..+|++||||.+++|+ |+|++++++++.+.+.......+++.++++++++.+
T Consensus       205 ~~~~li~De~~~~~~~~~~~~~~~~~~~~~d~~s~SK~~~~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (375)
T 2eh6_A          205 KDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDVIALAKGLGGGV-PIGAILAREEVAQSFTPGSHGSTFGGNPLACRAGTV  283 (375)
T ss_dssp             HTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTS-CCEEEEEEHHHHTTCCTTSCCCSSTTCHHHHHHHHH
T ss_pred             hCCEEEEeccccCCCCCCcchhhhhcCCCCCEEEEcccccCCC-CeEEEEEcHHHHhhhcCCCCCCCCCCCHHHHHHHHH
Confidence            9999999999998877665445555566789999999999998 999999999988888775566778889999999998


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTI  320 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~  320 (374)
                      +++.+.  ++.++++++++++.+.|+++.     . ...++.+.++++.++.     +..++++.|.++||.+.+...++
T Consensus       284 ~l~~~~--~~~~~~~~~~~~l~~~L~~~~-----~-~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~gi~~~~~~~~~  350 (375)
T 2eh6_A          284 VVDEVE--KLLPHVREVGNYFKEKLKELG-----K-GKVKGRGLMLGLELER-----ECKDYVLKALEKGLLINCTAGKV  350 (375)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHTT-----S-SEEEEETTEEEEECSS-----CCHHHHHHHHHTTEECEEETTTE
T ss_pred             HHHHHH--HHHHHHHHHHHHHHHHHHHHh-----c-CCceEEEEEEEEEEcC-----cHHHHHHHHHHCCCEEecCCCCE
Confidence            888764  567888888888888877642     2 2345678889988764     34689999999999999877899


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +|++++...+++++++++++|++++
T Consensus       351 iRi~~~~~~~~~~i~~~~~~l~~~l  375 (375)
T 2eh6_A          351 LRFLPPLIIQKEHIDRAISVLREIL  375 (375)
T ss_dssp             EEECCCTTCCHHHHHHHHHHHHHHC
T ss_pred             EEEECCCCCCHHHHHHHHHHHHHhC
Confidence            9999998999999999999998753

>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; 2.30A {Pseudomonas stutzeri}

Probab=100.00  E-value=2.4e-38  Score=303.34  Aligned_cols=332  Identities=23%  Similarity=0.289  Sum_probs=247.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|+.++++++.++  .+..+...+++++|++.+ +.+++++++||++|++.++++++.+  . ++     ++|++++++|
T Consensus        80 ~a~~~~~~~~~~~--~~~~~~~~~la~~l~~~~~~~~~v~~~~gg~eA~~~al~~ar~~--~-~~-----~~vi~~~~~y  149 (453)
T 2cy8_A           80 AAIAEALSHGVQY--AASHPLEVRWAERIVAAFPSIRKLRFTGSGTETTLLALRVARAF--T-GR-----RMILRFEGHY  149 (453)
T ss_dssp             HHHHHHHTTTCSS--CSSCHHHHHHHHHHHHHCTTCSEEEEESCHHHHHHHHHHHHHHH--H-CC-----CEEEEECC--
T ss_pred             HHHHHHHHhCCCC--CCCCHHHHHHHHHHHhhCCCCCEEEEeCCHHHHHHHHHHHHHHh--h-CC-----CEEEEEcCCc
Confidence            5666777664332  356778888999999877 7889999999999999999986532  1 22     7899999999


Q ss_pred             CCcccccccccCC----ccccccCC-CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           81 HGRTLAAISMSCD----NEAIRGFG-PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        81 hg~~~~~~~~~~~----~~~~~~~~-~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      ||.+.......+.    +.. .+.. +...++..++++|+++|+++++++++++++++++|+++++|.+.++++++++|.
T Consensus       150 hg~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~ep~~~~tG~~~~~~~~l~~l~  228 (453)
T 2cy8_A          150 HGWHDFSASGYNSHFDGQPA-PGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAFIAEPVGSHFGVTPVSDSFLREGA  228 (453)
T ss_dssp             ---------------------------CGGGEEEECTTCHHHHHHHHHHHGGGEEEEEECSSEHHHHTEECCHHHHHHHH
T ss_pred             CCCchhhHhhcCCccCCCcC-CCCCccccCceeecCCCCHHHHHHHHHhcCCCEEEEEECCCCCCCCCcCCCHHHHHHHH
Confidence            9988766543321    110 1110 011234556778999999999865457999999999888888888999999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC-----CCCCCCCCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGG  230 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~  230 (374)
                      ++|++||++||+||+|+|+ +.|..+..+.+++.||++|+||++++|+ |+|++++++++++.+..     ..+..++++
T Consensus       229 ~l~~~~g~~lI~DEv~~g~-~~g~~~~~~~~~~~~di~s~sK~l~~G~-~~G~v~~~~~~~~~l~~~~~~~~~~~~t~~~  306 (453)
T 2cy8_A          229 ELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDLTCLAKASAGGL-PGGILGGREDVMGVLSRGSDRKVLHQGTFTG  306 (453)
T ss_dssp             HHHHHTTCEEEEECTTTTT-TTCTTHHHHHHTCCCSEEEEEGGGGTTS-SCEEEEECHHHHTTSSSCC---------CCC
T ss_pred             HHHHHcCCEEEEecCcccc-ccCchhhhHHhCCCCcEEEEChhhhCCc-ceEEEechHHHHHHhccccCCCceeCCCCCC
Confidence            9999999999999999998 7776666666788899999999999998 99999999999988876     135568899


Q ss_pred             CHHHHHHHHHHHHH-HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-----CC----------
Q 017259          231 NPLASAVAIASLDV-IRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-----TA----------  294 (374)
Q Consensus       231 ~~~~~~aa~~al~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-----~~----------  294 (374)
                      ++++++++.++++. + .+++.++++++.+++++.|+++...++ .....++.|.++++.++.     ..          
T Consensus       307 n~~~~aa~~aal~~~~-~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~g~~~~i~~~~~~~~~~~~~~~~~~~~~  384 (453)
T 2cy8_A          307 NPITAAAAIAAIDTIL-EDDVCAKINDLGQFAREAMNHLFARKG-LNWLAYGRFSGFHLMPGLPPNTTDTGSITRAEVAR  384 (453)
T ss_dssp             CHHHHHHHHHHHHHHH-HTTHHHHHHHHHHHHHHHHHHHHHHTT-CCEEEECCTTEEEEEETSCTTCCCCHHHHTTCSCC
T ss_pred             CHHHHHHHHHHHHHHh-hhhHHHHHHHHHHHHHHHHHHHHhhCC-CcEEEEEeeeEEEEEEecccccccccccccccccc
Confidence            99999999999998 7 678899999999999999998765553 555567788999998864     10          


Q ss_pred             -CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          295 -LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       295 -~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                       ......++++.|+++||.+++..  .+|+  ++..+++++++++++|+++++ ++.+.+
T Consensus       385 ~~~~~~~~l~~~l~~~Gv~v~~~~--~~~l--~~~~t~~~i~~~l~~l~~~l~-~~~~~~  439 (453)
T 2cy8_A          385 PDVKMIAAMRMALILEGVDIGGRG--SVFL--SAQHEREHVEHLVTTFDRVLD-RLADEN  439 (453)
T ss_dssp             CCHHHHHHHHHHHHHTTEECBTTT--EEEC--CTTCCHHHHHHHHHHHHHHHH-HHHHTT
T ss_pred             ccHHHHHHHHHHHHHCCeEEeCCC--CEEe--eccCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence             01136789999999999997653  3554  588999999999999999998 765433

>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*

Probab=100.00  E-value=4.4e-42  Score=326.80  Aligned_cols=323  Identities=22%  Similarity=0.291  Sum_probs=266.2

Q ss_pred             ChHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            1 MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         1 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      ++|+.++++++..  ..++++...+|+++|++++ +.+++++++||++|++.|+++++.+.        ++++||+++++
T Consensus       122 ~~Av~~q~~~~~~--~~~~~~~~~~Lae~L~~~~p~~~~v~~~nSGseA~~~Aik~ar~~t--------gr~~ii~~~~~  191 (465)
T 2yky_A          122 RAAVERALAVGLN--LSTQTENEALFAEAVCDRFPSIDLVRFTNSGTEANLMALATATAIT--------GRKTVLAFDGG  191 (465)
Confidence            3677777777432  3467889999999999998 78899999999999999999986431        23899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      |||.+....  ++ + ...++.   ..+..++++|+++|+++++++++++++|+++|+++++|.+.++++++++|.++|+
T Consensus       192 yHG~~~~~~--sg-~-~~~g~~---~~~~~~~~~d~~~l~~~l~~~~~~~aavi~epv~~~~G~~~~~~~~l~~l~~l~~  264 (465)
T 2yky_A          192 YHGGLLNFA--SG-H-APTNAP---YHVVLGVYNDVEGTADLLKRHGHDCAAILVEPMLGAGGCVPAERAFLDLLRAEAS  264 (465)
Confidence            999988766  22 1 111111   1345567789999999998665689999999998889988989999999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC-----CCCCCCCCCCHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP-----GEHGSTFGGNPLA  234 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~-----~~~~~~~~~~~~~  234 (374)
                      +||++||+||+|+ + +.|..++.+.+++.||+++|||++++|+ |+||+++++++++.+.+     ..+..||++++++
T Consensus       265 ~~g~llI~DEv~~-~-r~g~~~a~~~~gv~pDi~t~sK~lg~G~-piG~v~~~~~i~~~l~~~~~g~~~~~~T~~~npla  341 (465)
T 2yky_A          265 RCGALLIFDEVMT-S-RLSGGGAQEMLGISADLTTLGKYIGGGM-SFGAFGGRRDLMERFDPARDGAFAHAGTFNNNILT  341 (465)
Confidence            9999999999999 7 7787777788888999999999999998 99999999999998876     2467889999999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHHHHHH
Q 017259          235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAYDICL  304 (374)
Q Consensus       235 ~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~~~~~  304 (374)
                      +++++++++.++++++.++++++.++++++|+++...+ +.+...++.|.++++.+.+...          .....++++
T Consensus       342 ~aAa~aaL~~l~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~v~g~G~~~~i~~~~~~~~~~~~~~~~d~~~~~~~~~  420 (465)
T 2yky_A          342 MSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVEN-QAPLQFTGLGSLGTIHFSRAPIRSAGDVRAADQQLKELFFF  420 (465)
Confidence            99999999998888899999999999999999886554 3556678889999998754110          012567999


Q ss_pred             HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|+++||++.|.....    +++.++++|+++++++|+++++ ++
T Consensus       421 ~ll~~GV~v~p~~~~~----~s~~~t~edid~~l~~l~~~l~-~~  460 (465)
T 2yky_A          421 HMLRKGIYLAPRGMYA----LSLEIADAGRDAFAEALADFIG-EQ  460 (465)
Confidence            9999999999875322    6678999999999999999988 65

>3l8a_A METC, putative aminotransferase, probable beta-cystathi; beta-cystathionase, lyase; HET: PLP; 1.54A {Streptococcus mutans}

Probab=100.00  E-value=3.7e-33  Score=264.83  Aligned_cols=315  Identities=13%  Similarity=0.123  Sum_probs=223.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++++..+.++....+..+++++++++.++    .+++++++|+++|++.+++++     .++|     |+|++..
T Consensus        81 ~a~~~~~~~~~~~y~~~~~~l~~~l~~~l~~~~g~~~~~~~v~~~~g~~ea~~~a~~~~-----~~~g-----d~Vi~~~  150 (421)
T 3l8a_A           81 EAIINYGREHIFGYNYFNDDLYQAVIDWERKEHDYAVVKEDILFIDGVVPAISIALQAF-----SEKG-----DAVLINS  150 (421)
T ss_dssp             HHHHHHHHHCCSSCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTE-----EEEEEEE
T ss_pred             HHHHHHHhcCCcCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEECC
Confidence            5667777664444433445566678888877655    568999999999999999988     5667     9999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCC-CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      |+||+....+...+......    +.. .+..+  ..|+++|++++++  ++++++++++++|++|.+. +++.+++|.+
T Consensus       151 ~~y~~~~~~~~~~g~~~~~~----~~~~~~~~~--~~d~~~le~~i~~--~~~~~vil~~p~nptG~~~-~~~~l~~l~~  221 (421)
T 3l8a_A          151 PVYYPFARTIRLNDHRLVEN----SLQIINGRF--EIDFEQLEKDIID--NNVKIYLLCSPHNPGGRVW-DNDDLIKIAE  221 (421)
T ss_dssp             SCCHHHHHHHHHTTEEEEEE----ECEEETTEE--ECCHHHHHHHHHH--TTEEEEEEESSBTTTTBCC-CHHHHHHHHH
T ss_pred             CCcHHHHHHHHHCCCEEEec----cccccCCCe--eeCHHHHHHHhhc--cCCeEEEECCCCCCCCCcC-CHHHHHHHHH
Confidence            99998766655443221111    100 00000  0289999999975  4799999999999999554 8889999999


Q ss_pred             HHHhcCCEEEEeccccCCcccccCc-cccc-----CCCCCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCC-CCCC
Q 017259          157 LCSKYNILMIADEIQSGLARSGRML-ASDW-----EEVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGE-HGST  227 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~~~~g~~~-~~~~-----~~~~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~-~~~~  227 (374)
                      +|++||++||+||+|+++++.|..+ .+..     .+..+++.|+||+++ +|+ |+|+++++ +++.+.+.... ...+
T Consensus       222 l~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-~~G~~~~~~~~l~~~~~~~~~~~~~  300 (421)
T 3l8a_A          222 LCKKHGVILVSDEIHQDLALFGNTHHSLNTLDASYKDFTIILSSATKTFNIAGT-KNSFAIIQNESLRRKFQYRQLANNQ  300 (421)
T ss_dssp             HHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCTTGGGTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTTC
T ss_pred             HHHHcCCEEEEEccccccccCCCCCccHHHcCchhcCcEEEEEeChhhccCchh-heEeEEcCCHHHHHHHHHHHHhccc
Confidence            9999999999999999987776422 1111     223345678999998 798 99999987 88888776543 2345


Q ss_pred             CCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEecc-CCCchhHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDK-TALPVSAYDIC  303 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~-~~~~~~~~~~~  303 (374)
                      +++++++++++.++++...+  ++..++++++.+++.+.|++.    | .+....+.+.++ |++++. ..   +..++.
T Consensus       301 ~~~n~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~-~i~~~~~~~~~~~~v~~~~~~~---~~~~l~  372 (421)
T 3l8a_A          301 HEVPTVGMIATQAAFQYGKPWLEELKTVIEGNIKLVIKELEAK----T-KIKVMEPEGTYLVWLDFSAYAI---AQPQLS  372 (421)
T ss_dssp             SCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH----C-SCEEECCSBSSEEEEECGGGTC---CTTHHH
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhC----C-CceEeCCCeeEEEEEeccccCC---CHHHHH
Confidence            57899999999999885322  234455555566666655544    2 233344445544 577764 22   467899


Q ss_pred             HHHHH-CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          304 LKMKE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       304 ~~l~~-~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|++ +||.+.++      +.+++||+++  .+++++++++++|+++++
T Consensus       373 ~~l~~~~gi~v~~g~~f~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~l~  420 (421)
T 3l8a_A          373 EKLQNEAKVVLNDGAHFGKEGKYFARLNVA--TPKNTVQEALSRIISVFG  420 (421)
T ss_dssp             HHHHHTTCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHhCCEEEECchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            99985 59999874      3689999966  689999999999998875

>3op7_A Aminotransferase class I and II; PLP-dependent transferase, structural genomics, joint center structural genomics, JCSG; HET: LLP UNL; 1.70A {Streptococcus suis 89} PDB: 3p6k_A*

Probab=100.00  E-value=7.3e-32  Score=251.92  Aligned_cols=310  Identities=15%  Similarity=0.181  Sum_probs=224.7

Q ss_pred             HHHHHHHhccccCcCCCCCcHHHHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      ++.+++.....  .+++.+...++++.+++++   +.+++++++||++|++.+++++     .++|     |+|++..|+
T Consensus        47 ~~~~~~~~~~~--~y~~~~g~~~l~~~la~~~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~Vl~~~~~  114 (375)
T 3op7_A           47 DFYKKLQGTKL--NYGWIEGSPAFKKSVSQLYTGVKPEQILQTNGATGANLLVLYSL-----IEPG-----DHVISLYPT  114 (375)
T ss_dssp             HHHHHHHTSCC--SSCCTTCCHHHHHHHHTTSSSCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESS
T ss_pred             HHHHHHhcCCc--CCCCCCChHHHHHHHHHHhccCChhhEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEeCCC
Confidence            44444444332  2334556788999999975   4579999999999999999988     5677     999999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      |++........+...             ..++.       .|+++++++++   ++++++++++++|++|.+. +.++++
T Consensus       115 ~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~  177 (375)
T 3op7_A          115 YQQLYDIPKSLGAEV-------------DLWQIEEENGWLPDLEKLRQLIR---PTTKMICINNANNPTGAVM-DRTYLE  177 (375)
T ss_dssp             CTHHHHHHHHTTCEE-------------EEEEEEGGGTTEECHHHHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHH
T ss_pred             chhHHHHHHHcCCEE-------------EEEeccccCCCCCCHHHHHHhhc---cCCeEEEEcCCCCCCCCCC-CHHHHH
Confidence            988665544333221             11111       17999999887   5788999999999999777 799999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGN  231 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  231 (374)
                      +|.++|++||++||+||+|+++.+.+.....+.++..+++.|+||.++ +|+ |+||+++++++.+.+.......+++.+
T Consensus       178 ~i~~la~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~v~~~~~l~~~~~~~~~~~~~~~~  256 (375)
T 3op7_A          178 ELVEIASEVGAYILSDEVYRSFSELDVPSIIEVYDKGIAVNSLSKTYSLPGI-RIGWVAANHQVTDILRDYRDYTMICAG  256 (375)
T ss_dssp             HHHHHHHTTTCEEEEECCSCCCSSSCCCCHHHHCTTEEEEEESSSSSSCGGG-CCEEEECCHHHHHHHTTTGGGTTSCCC
T ss_pred             HHHHHHHHcCCEEEEEcccccccccCCCchhhhcCCEEEEeEChhhcCCccc-ceEEEEeCHHHHHHHHHHHhhhccCCC
Confidence            999999999999999999998765432222333444456779999998 788 999999999999999877677788889


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCC
Q 017259          232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERG  310 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~G  310 (374)
                      ++.++++.++++..  +++.++.++..+..++.+.+.....|.+....+..+.+.++.++...   +..++++.|+ ++|
T Consensus       257 ~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~ll~~~g  331 (375)
T 3op7_A          257 VFDDLVAQLALAHY--QEILERNRHILEENLAILDQWIEEEPLVSYIRPAVVSTSFVKIAVDM---PMEDFCLQLLQEHG  331 (375)
T ss_dssp             HHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHHHHHCTTEEECCCSSSSCEEEEECCSS---CHHHHHHHHHHHHC
T ss_pred             cHHHHHHHHHHhcc--HHHHHHHHHHHHHHHHHHHHHHhhCCCceEecCCCeEEEeEEcCCCC---CHHHHHHHHHHhCC
Confidence            99999888888743  23344444443444444444433333222222233456666665443   6788888885 789


Q ss_pred             eEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          311 ILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       311 i~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      |.+.++.    .+++|+++  ..+.+++++++++|+++++ ++.
T Consensus       332 i~v~~g~~~~~~~~iRi~~--~~~~~~i~~~l~~l~~~l~-~~~  372 (375)
T 3op7_A          332 VLLVPGNRFERDGYVRLGF--ACEQETLIKGLEKLSQFLR-RFD  372 (375)
T ss_dssp             EECEEGGGGTCTTEEEECC--CSCHHHHHHHHHHHHHHHG-GGC
T ss_pred             EEEeChhhhCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-HHh
Confidence            9998763    68999994  4566899999999999998 653

>3aow_A Putative uncharacterized protein PH0207; protein-PLP-AKG triple complex, schiff-base linkage, kynuren aminotransferase; HET: PLP AKG; 1.56A {Pyrococcus horikoshii} PDB: 3aov_A* 3ath_A* 3av7_A* 1x0m_A 1wst_A*

Probab=100.00  E-value=5.1e-32  Score=258.81  Aligned_cols=294  Identities=17%  Similarity=0.215  Sum_probs=212.1

Q ss_pred             CcHHHHHHHHhccc----CC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           21 DKFPVFAERLTSMF----GY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ....++++.+++++    |.   +++++|+|+++|++.+++++     ..+|     |+|++..|+|++....+...+..
T Consensus       118 ~g~~~lr~~ia~~~~~~~g~~~~~~v~~t~G~~~al~~~~~~l-----~~~G-----d~Vlv~~p~y~~~~~~~~~~g~~  187 (448)
T 3aow_A          118 KGFTPLRETLMKWLGKRYGISQDNDIMITSGSQQALDLIGRVF-----LNPG-----DIVVVEAPTYLAALQAFNFYEPQ  187 (448)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCTTSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTCCE
T ss_pred             CCcHHHHHHHHHHHHHhcCcCChhhEEEeCcHHHHHHHHHHHH-----cCCC-----CEEEEeCCChHHHHHHHHHcCCE
Confidence            34556666666655    64   79999999999999999988     5667     99999999999876655443321


Q ss_pred             ccccccCCCCCCCceeccC----CCHHHHHHHHHh---cCCcEEEEEE-ccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           94 NEAIRGFGPLLPGHLKVDF----GDITALEKIFKE---SGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~---~~~~~~~vi~-~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                                   +..++.    .|+++|+++++.   ...+++++++ .+++|++|.+. +.+.+++|.++|++||++|
T Consensus       188 -------------~~~v~~~~~g~d~~~L~~~l~~~~~~~~~~k~v~~~~~~~NPtG~~~-~~~~l~~i~~la~~~~~~l  253 (448)
T 3aow_A          188 -------------YIQIPLDDEGMKVEILEEKLKELKSQGKKVKVVYTVPTFQNPAGVTM-NEDRRKYLLELASEYDFIV  253 (448)
T ss_dssp             -------------EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred             -------------EEEeccCCCCCCHHHHHHHHhhhhccCCCCeEEEECCCCCCCcCCCC-CHHHHHHHHHHHHHcCCEE
Confidence                         112221    279999999872   1136888754 55778888776 7999999999999999999


Q ss_pred             EEeccccCCcccccCc-cc---ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          166 IADEIQSGLARSGRML-AS---DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~-~~---~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+||+|+++.+.|... .+   +..+...++.||||.+++|+ |+||+++++++.+.+.......+++.+++++.++.++
T Consensus       254 I~De~y~~~~~~g~~~~~~~~~~~~~~vi~~~S~SK~~~~Gl-riG~v~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~  332 (448)
T 3aow_A          254 VEDDPYGELRYSGNPEKKIKALDNEGRVIYLGTFSKILAPGF-RIGWMVGDPGIIRKMEIAKQSTDLCTNVFGQVVAWRY  332 (448)
T ss_dssp             EEECSCTTCBCSSCCCCCTGGGCTTSCEEEEEESTTTTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             EEECCCccccCCCCCCcCHHhcCCCCCEEEEccchhhccccc-cEEEEEeCHHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            9999999876655421 11   11223345669999999999 9999999999988887544444667799999998888


Q ss_pred             HHHHhhhc----HHHHHHHHHHHHHHHHHHHHHhCCC-ceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259          242 LDVIRDEK----LAERSAHLGEELRQHLFKIQQQFPN-YVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT  316 (374)
Q Consensus       242 l~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  316 (374)
                      ++....++    ..++++++++++.+.|++.   +|. +....+..|.++|+.++...   +..++++.|.++||.+.++
T Consensus       333 L~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~p~~g~~~~v~~~~~~---~~~~l~~~l~~~gV~v~pg  406 (448)
T 3aow_A          333 VDGGYLEKHIPEIRKFYKPRRDAMLEALEEF---MPEGVKWTKPEGGMFIWVTLPDGI---DSKKMLERAIKKGVAYVPG  406 (448)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHH---CCTTCEECCCSBSSEEEEECSTTC---CHHHHHHHHHHTTEECEEG
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHh---CCCCeEEeCCCccEEEEEEcCCCC---CHHHHHHHHHHCCcEEEcc
Confidence            87421122    3344445555555555443   331 22212334778888887543   6788999999999999874


Q ss_pred             --------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 --------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 --------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              ..+++|++++. .+++++++++++|+++++
T Consensus       407 ~~f~~~~~~~~~iRls~~~-~~~e~i~~~~~~L~~~l~  443 (448)
T 3aow_A          407 EAFYAHRDVKNTMRLNFTY-VDEDKIMEGIKRLAETIK  443 (448)
T ss_dssp             GGGSTTCCCCSEEEEECSS-SCTHHHHHHHHHHHHHHH
T ss_pred             hhhcCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence                    25799999775 388999999999999987

>1yiz_A Kynurenine aminotransferase; glutamine transaminase; kynurenic acid, mosquito, PLP-enzyme, pyridoxal phosphate, PLP; HET: LLP; 1.55A {Aedes aegypti} SCOP: c.67.1.1 PDB: 1yiy_A* 2r5c_A* 2r5e_A*

Probab=100.00  E-value=1.9e-31  Score=253.56  Aligned_cols=301  Identities=14%  Similarity=0.146  Sum_probs=211.0

Q ss_pred             HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..++++.++++    +|    .+ ++++++|+++|++.+++++     ..+|     |+|++..|+||+....+...+..
T Consensus        79 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~~  148 (429)
T 1yiz_A           79 HPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-----VDEG-----DEVIIIEPFFDCYEPMVKAAGGI  148 (429)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred             cHHHHHHHHHHHHHHhCCCCCCcCCEEEecChHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHcCCE
Confidence            44555555554    24    46 8999999999999999988     4567     99999999999976655433322


Q ss_pred             ccccccCCCCC--CCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLL--PGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~--~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      .... ...+..  .......+ .|+++|+++++   ++++++++++++|++|.+. +++++++|.++|++||++||+||+
T Consensus       149 ~~~~-~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~  223 (429)
T 1yiz_A          149 PRFI-PLKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDEV  223 (429)
T ss_dssp             EEEE-ECBCCCSSSSEEGGGCBCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             EEEE-eCCcccccccccccCcccCHHHHHHHhc---cCceEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEecc
Confidence            1111 110000  00000012 37999998886   5789999999999999776 789999999999999999999999


Q ss_pred             ccCCcccccC-ccccc----CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRM-LASDW----EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       171 ~~~~~~~g~~-~~~~~----~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |+++.+.|.. ..+..    .+..+.+.|+||.++ +|+ |+||+++++++++.+.......+++.++++++++.++++.
T Consensus       224 ~~~~~~~g~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  302 (429)
T 1yiz_A          224 YEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFET  302 (429)
T ss_dssp             TTTCBCTTSCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG-CCEEEESCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             ccccccCCCCCcChhhccCCcCceEEEecchhccCCCCc-ceEEEEeCHHHHHHHHHHHhhcccCCChHHHHHHHHHHhc
Confidence            9987665532 12211    223334669999998 788 9999999999888887654566788899999999999887


Q ss_pred             -----HhhhcHH----HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---------chhHHHHHHHH
Q 017259          245 -----IRDEKLA----ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------PVSAYDICLKM  306 (374)
Q Consensus       245 -----~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~l  306 (374)
                           ...+++.    ++++++++++.+.|++.     ++.......|.++|+.++....         ..+..+++++|
T Consensus       303 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l  377 (429)
T 1yiz_A          303 ELKRLKSPECYFNSISGELMAKRDYMASFLAEV-----GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWM  377 (429)
T ss_dssp             HHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHH-----TCEEEECSBSSEEEEECCSSCTTTTCCSSSSSCHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHhC-----CCcccCCCcceEEEEEcccccccccccccccCCCHHHHHHHH
Confidence                 3223344    44445555555555543     2322222346788888865300         01567899988


Q ss_pred             H-HCCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          307 K-ERGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       307 ~-~~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      . ++||.+.++.           .+++||+++  .+++++++++++|+++++
T Consensus       378 ~~~~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~  427 (429)
T 1yiz_A          378 TKSVGLQGIPPSAFYSEPNKHLGEDFVRYCFF--KKDENLQKAAEILRKWKG  427 (429)
T ss_dssp             HHHTSEECBCGGGGSCGGGGGGTTTEEEEECC--SCHHHHHHHHHHHHHHSC
T ss_pred             HHhCCEEEeCchHhCCCcccCCCCCeEEEEec--CCHHHHHHHHHHHHHhcc
Confidence            7 7899998741           579999976  589999999999998876

>2w8t_A SPT, serine palmitoyltransferase; HET: LLP; 1.25A {Sphingomonas paucimobilis} PDB: 2w8u_A* 2w8w_A* 2xbn_A* 2w8j_A* 2w8v_A* 2jg2_A* 2jgt_A 2x8u_A*

Probab=100.00  E-value=4.2e-31  Score=251.13  Aligned_cols=309  Identities=14%  Similarity=0.089  Sum_probs=233.0

Q ss_pred             hHHHHHHHhccc-cC----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL-SS----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++.+... ..    ..+..+...+++++|++++|.+++++++||++|+..+++++     .++|     |.|++.
T Consensus        85 ~a~~~~~~~~~~~~~~~~~~~G~~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~al~~l-----~~~g-----d~vl~~  154 (427)
T 2w8t_A           85 AAGKEALEKFGSGTCGSRMLNGTFHDHMEVEQALRDFYGTTGAIVFSTGYMANLGIISTL-----AGKG-----EYVILD  154 (427)
T ss_dssp             HHHHHHHHHHCSCCCSCTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----SCTT-----CEEEEE
T ss_pred             HHHHHHHHHhCCCCcccccccCCcHHHHHHHHHHHHHhCCCceEEecCcHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence            466666665221 11    11245778899999999999999999999999999998887     5667     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC-cEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .++|.+.... ....+            ..+..++++|+++|+++++++++ ++++|++++++|++|.+.+    +++|.
T Consensus       155 ~~~h~~~~~~-~~~~g------------~~~~~~~~~d~~~le~~l~~~~~~~~~~v~~~~~~n~tG~~~~----l~~l~  217 (427)
T 2w8t_A          155 ADSHASIYDG-CQQGN------------AEIVRFRHNSVEDLDKRLGRLPKEPAKLVVLEGVYSMLGDIAP----LKEMV  217 (427)
T ss_dssp             TTCCHHHHHH-HHHSC------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESEETTTTEECC----HHHHH
T ss_pred             CcccHHHHHH-HHHcC------------CeeEEeCCCCHHHHHHHHHhccCCCCeEEEEcCCCCCCCCccC----HHHHH
Confidence            8886443332 22222            23445566799999999986543 7899999999999999998    99999


Q ss_pred             HHHHhcCCEEEEeccccCC--cccccCcccccCCCCCc----EEEecccccCCccchhhheeCHHHHhhcCCCC--CCCC
Q 017259          156 DLCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPD----MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~~~d----~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~  227 (374)
                      ++|++||++||+||+|+++  +..|.. ....+++.++    +.|+||+++  . ++||+++++++++.+....  ...+
T Consensus       218 ~l~~~~g~~li~Dea~~~~~~~~~g~~-~~~~~~~~~~~di~~~s~sK~~g--~-~gG~v~~~~~l~~~l~~~~~~~~~~  293 (427)
T 2w8t_A          218 AVAKKHGAMVLVDEAHSMGFFGPNGRG-VYEAQGLEGQIDFVVGTFSKSVG--T-VGGFVVSNHPKFEAVRLACRPYIFT  293 (427)
T ss_dssp             HHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC--S-CCEEEEECCTTGGGGGGTCHHHHSS
T ss_pred             HHHHHcCCEEEEECCccccccCCCCCc-hHhhcCCCcCCcEEEecchhhhc--c-CCCEEEeCHHHHHHHHHhccccccc
Confidence            9999999999999999964  222333 2233444444    569999996  4 6688999988888887542  1235


Q ss_pred             CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchhHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      ++.+++.++++.++++.+.. +++.++++++.+++++.|+++.  ++ +.  ..+ .+.++++.+++..   ...++.+.
T Consensus       294 ~~~~~~~~aa~~~al~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--~~~~~~~~~~~~~~~~~---~~~~l~~~  365 (427)
T 2w8t_A          294 ASLPPSVVATATTSIRKLMTAHEKRERLWSNARALHGGLKAMG--FR-LG--TETCDSAIVAVMLEDQE---QAAMMWQA  365 (427)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHHT--CE-ES--CSSCCSSEEEEEESSHH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--Cc-cc--CCCCCCCEEEEEECCHH---HHHHHHHH
Confidence            57788888888899998765 5778899999999999998762  21 11  122 5678888876432   57889999


Q ss_pred             HHHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          306 MKERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       306 l~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      |.++||.+.++.       .+++||+++..++++++++++++|+++++ ++.
T Consensus       366 L~~~Gi~v~~~~~~~~~~~~~~lRi~~~~~~t~e~i~~~~~~l~~~l~-~~~  416 (427)
T 2w8t_A          366 LLDGGLYVNMARPPATPAGTFLLRCSICAEHTPAQIQTVLGMFQAAGR-AVG  416 (427)
T ss_dssp             HHHTTEECEEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHT
T ss_pred             HHHCCeEEeeeCCCCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHH-HhC
Confidence            999999998752       36899999988999999999999999998 653

>3euc_A Histidinol-phosphate aminotransferase 2; YP_297314.1, structur genomics, joint center for structural genomics, JCSG; HET: MSE; 2.05A {Ralstonia eutropha JMP134} SCOP: c.67.1.0

Probab=99.98  E-value=7e-31  Score=244.54  Aligned_cols=305  Identities=15%  Similarity=0.082  Sum_probs=219.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|+.+++....  ...|+.+...++++++++++|.   +++++|+|+++|++.+++.+     .++|     |+|++..+
T Consensus        50 ~a~~~~~~~~~--~~~y~~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~  117 (367)
T 3euc_A           50 SELAARLGEVA--LNRYPVPSSEALRAKLKEVMQVPAGMEVLLGNGSDEIISMLALAA-----ARPG-----AKVMAPVP  117 (367)
T ss_dssp             HHHHHHHHHHH--TTCSCCCCHHHHHHHHHHHHTCCTTCEEEEEEHHHHHHHHHHHHT-----CCTT-----CEEEEEES
T ss_pred             HHHHHHhhhhh--hhcCCCCcHHHHHHHHHHHhCCCCcceEEEcCCHHHHHHHHHHHH-----cCCC-----CEEEEcCC
Confidence            45555555321  1224456788999999999877   79999999999999999987     5667     99999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      +|++....+...+......    +...+.    ..|+++++++++++  +++++++++++|++|.+. +.+.+++|.++|
T Consensus       118 ~~~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~  186 (367)
T 3euc_A          118 GFVMYAMSAQFAGLEFVGV----PLRADF----TLDRGAMLAAMAEH--QPAIVYLAYPNNPTGNLF-DAADMEAIVRAA  186 (367)
T ss_dssp             CSCCSCHHHHTTTCEEEEE----ECCTTS----CCCHHHHHHHHHHH--CCSEEEEESSCTTTCCCC-CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHcCCeEEEe----cCCCCC----CCCHHHHHHHhhcc--CCCEEEEcCCCCCCCCCC-CHHHHHHHHHhh
Confidence            9998766655443221111    110100    12899999999853  678888888889999877 788899999999


Q ss_pred             Hhc--CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259          159 SKY--NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       159 ~~~--~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (374)
                      ++|  |+++|+||+|+++...+........+....+.|+||...+|+ |+||+++++++.+.+...  ..+++.++++++
T Consensus       187 ~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~  263 (367)
T 3euc_A          187 QGSVCRSLVVVDEAYQPFAQESWMSRLTDFGNLLVMRTVSKLGLAGI-RLGYVAGDPQWLEQLDKV--RPPYNVNVLTEA  263 (367)
T ss_dssp             BTTSCBCEEEEECTTCCSSSCCSGGGGGTCTTEEEEEECCCTTSCSC-CEEEEEECHHHHHHHGGG--CCSSCCCHHHHH
T ss_pred             hhcCCCcEEEEeCcchhhcccchHHHHhhCCCEEEEecchhhccccc-CceeeeeCHHHHHHHHHh--CCCCCCCHHHHH
Confidence            999  999999999998754333222233333344569999944688 999999999998888753  346778999999


Q ss_pred             HHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          237 VAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       237 aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ++.++++.... ++..++++++.+++.+.|+    .+|++. ..++.+.++++.++      +..++.+.|.++||.+++
T Consensus       264 a~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~----~~~g~~-~~~~~~~~~~~~~~------~~~~l~~~l~~~gi~v~~  332 (367)
T 3euc_A          264 TALFALEHVAVLDEQAAQLRAERSRVAEGMA----AHGGVT-VFPSAANFLLARVP------DAAQTFDRLLARKVLIKN  332 (367)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHHHH----TSTTCE-ECCCSSSEEEEECS------CHHHHHHHHHTTTEECEE
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHH----hCCCcE-ECCCCCeEEEEECC------CHHHHHHHHHHCCeEEEE
Confidence            99988875111 1334444444444444443    343332 34456778887776      367899999999999987


Q ss_pred             CC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 TH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 ~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.      .+++||+++   +++++++++++|+++++
T Consensus       333 ~~~~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l~  366 (367)
T 3euc_A          333 VSKMHPLLANCLRVTVS---TPEENAQFLEAFAASLQ  366 (367)
T ss_dssp             CGGGCGGGTTEEEEECC---CHHHHHHHHHHHHHHTC
T ss_pred             CCccCCCCCCEEEEecC---CHHHHHHHHHHHHHHhc
Confidence            63      489999944   89999999999998875

>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: PLP; 1.50A {Clostridium difficile} PDB: 4dgt_A*

Probab=99.98  E-value=2.7e-31  Score=249.29  Aligned_cols=315  Identities=13%  Similarity=0.061  Sum_probs=218.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++.+..+.++.+..+.++++++++++.++    .+++++++|+++|++.+++.+     .++|     |+|++..
T Consensus        52 ~a~~~~~~~~~~~y~~~~~~~~~~l~~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~  121 (391)
T 4dq6_A           52 DSLKNRLEQEIYGYTTRPDSYNESIVNWLYRRHNWKIKSEWLIYSPGVIPAISLLINEL-----TKAN-----DKIMIQE  121 (391)
T ss_dssp             HHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CEEEECS
T ss_pred             HHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHHhCCCCcHHHeEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcC
Confidence            4555666544333333456667778888888765    568999999999999999988     5667     9999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCC--CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      |+|++....+...+......    +..  .+.. .. -|+++++++++   + ++++++++++|++|.+. +.+.+++|.
T Consensus       122 ~~~~~~~~~~~~~g~~~~~~----~~~~~~~~~-~~-~d~~~l~~~l~---~-~~~v~i~~p~nptG~~~-~~~~l~~i~  190 (391)
T 4dq6_A          122 PVYSPFNSVVKNNNRELIIS----PLQKLENGN-YI-MDYEDIENKIK---D-VKLFILCNPHNPVGRVW-TKDELKKLG  190 (391)
T ss_dssp             SCCTHHHHHHHHTTCEEEEC----CCEECTTSC-EE-CCHHHHHHHCT---T-EEEEEEESSBTTTTBCC-CHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCeEEee----eeeecCCCc-eE-eeHHHHHHHhh---c-CCEEEEECCCCCCCcCc-CHHHHHHHH
Confidence            99998766555443221111    110  0000 00 17999999887   3 88898988889999876 788899999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCc-ccccCC-----CCCcEEEeccccc-CCccchhhheeCH-HHHhhcCCCC-CCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRML-ASDWEE-----VRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGE-HGS  226 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~-----~~~d~~s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~-~~~  226 (374)
                      ++|++||+++|+||+|+++.+.|... ......     ....+.|+||.++ +|+ |+||+++++ ++.+.+.... ...
T Consensus       191 ~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~  269 (391)
T 4dq6_A          191 DICLKHNVKIISDEIHSDIILKKHKHIPMASISKEFEKNTITCMAPTKTFNIAGL-QSSYVVLPDEKDYKLLDDAFTRID  269 (391)
T ss_dssp             HHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEECSHHHHTCGGG-CCEEEECCSHHHHHHHHHHHHHTT
T ss_pred             HHHHHcCCEEEeeccccccccCCCCccCHHHcCccccCcEEEEEechhhccCccc-ceEEEEeCCHHHHHHHHHHHHhhc
Confidence            99999999999999999886665422 111111     1122448899998 788 999998875 7777776442 234


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHH
Q 017259          227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDIC  303 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~  303 (374)
                      +++.++++++++.++++...+  ++..++++++.+++.+.|++.   +|++.......+.+.|+.++. ..   +..++.
T Consensus       270 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~  343 (391)
T 4dq6_A          270 IKRNNCFSLVATEASYNNGESWLESFLEYLESNIDFAIKYINEN---MPKLKVRKPEGTYLLWVDFSALGL---SDEELE  343 (391)
T ss_dssp             CCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CTTSEECCCSBSSEEEEECGGGCC---CHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHHHHHhh---CCCCEecCCCccEEEEEEhhhcCC---CHHHHH
Confidence            567899999999988875321  233445555555555555442   333222222234455577764 22   678999


Q ss_pred             HHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          304 LKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       304 ~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|.++ ||.++++      ..+++|++++  .+++++++++++|+++++
T Consensus       344 ~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  391 (391)
T 4dq6_A          344 SILVQKGKVALNQGNSFGIGGSGYQRINLA--CPRSMLEEALIRIKNAIN  391 (391)
T ss_dssp             HHHHHTTCEECEEGGGGCTTCTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCEEeeCchhhCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHhC
Confidence            999998 9999874      2489999966  689999999999998763

>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A {Lactobacillus delbrueckii subsp} SCOP: c.67.1.0

Probab=99.98  E-value=5.1e-31  Score=247.37  Aligned_cols=320  Identities=13%  Similarity=0.136  Sum_probs=222.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.+++.+..+.++....+.++++++.+++.+|    .+++++++|+++|++.+++.+     .++|     |+|++..
T Consensus        47 ~a~~~~~~~~~~~y~~~~~~l~~~la~~l~~~~g~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~  116 (391)
T 3dzz_A           47 ASMEEKLKVAAFGYESVPAEYYKAVADWEEIEHRARPKEDWCVFASGVVPAISAMVRQF-----TSPG-----DQILVQE  116 (391)
T ss_dssp             HHHHHHHTTCCCCCBCCCHHHHHHHHHHHHHHHSCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CEEEECS
T ss_pred             HHHHHHHhcCcCCCCCCCHHHHHHHHHHHHHHhCCCCCHHHEEECCCHHHHHHHHHHHh-----CCCC-----CeEEECC
Confidence            4555555543332222234455667777776655    568999999999999999988     5667     9999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      |+|++....+...+......    +..  ...-.+ .|++++++++++  ++++++++++++|++|.+. +++.+++|.+
T Consensus       117 ~~~~~~~~~~~~~g~~~~~~----~~~--~~~~~~~~d~~~l~~~l~~--~~~~~v~i~~p~nptG~~~-~~~~l~~i~~  187 (391)
T 3dzz_A          117 PVYNMFYSVIEGNGRRVISS----DLI--YENSKYSVNWADLEEKLAT--PSVRMMVFCNPHNPIGYAW-SEEEVKRIAE  187 (391)
T ss_dssp             SCCHHHHHHHHHTTCEEEEC----CCE--EETTEEECCHHHHHHHHTS--TTEEEEEEESSBTTTTBCC-CHHHHHHHHH
T ss_pred             CCcHHHHHHHHHcCCEEEEe----eee--ecCCceeecHHHHHHHHhc--cCceEEEEECCCCCCCccc-CHHHHHHHHH
Confidence            99998766555443221111    110  000000 379999999974  3788998988999999876 7888999999


Q ss_pred             HHHhcCCEEEEeccccCCcccccC-cccccCC-CCCc----EEEeccccc-CCccchhhheeC-HHHHhhcCCCCC-CCC
Q 017259          157 LCSKYNILMIADEIQSGLARSGRM-LASDWEE-VRPD----MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GST  227 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~-~~~d----~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~-~~~  227 (374)
                      +|++||+++|+||+|+++.+.|.. ....... ..+|    +.|+||.++ +|+ |+||++++ +++.+.+..... ..+
T Consensus       188 ~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~d~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~  266 (391)
T 3dzz_A          188 LCAKHQVLLISDEIHGDLVLTDEDITPAFTVDWDAKNWVVSLISPSKTFNLAAL-HAACAIIPNPDLRARAEESFFLAGI  266 (391)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSCCCCCGGGSCTTTGGGEEEEECSHHHHTCTTT-CCEEEECCSHHHHHHHHHHHHHHTC
T ss_pred             HHHHCCCEEEEecccccccCCCCCceehhhcCccccCcEEEEEeChhhccccch-hheEEEECCHHHHHHHHHHHHhhcc
Confidence            999999999999999988766642 2222222 2256    458899998 798 99999986 888887765322 345


Q ss_pred             CCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      ++.++++++++.++++....  ++..++++++.+++.+.|++.   +|++.......+.+.|+.++...  .+..++.+.
T Consensus       267 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~---~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~  341 (391)
T 3dzz_A          267 GEPNLLAIPAAIAAYEEGHDWLRELKQVLRDNFAYAREFLAKE---VPEVKVLDSNASYLAWVDISALG--MNAEDFCKY  341 (391)
T ss_dssp             SSCCTTHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CTTSEECCCCBSSEEEEECGGGC--SCHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh---CCCcEEeccCceEEEEEehhhcC--CCHHHHHHH
Confidence            67888999999888876321  244555555666666666542   33332222233455567776421  167899999


Q ss_pred             HH-HCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          306 MK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       306 l~-~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      |+ ++||.++++.      .+++|++++  .+++++++++++|+++++ ++
T Consensus       342 l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~-~~  389 (391)
T 3dzz_A          342 LREKTGLIISAGNGYRGNGHEFVRINLA--CPKELVIDGMQRLKQGVL-NL  389 (391)
T ss_dssp             HHHHHCEECEESGGGCTTGGGEEEEECC--SCHHHHHHHHHHHHHHHH-TC
T ss_pred             HHHhCCEEEeCchhhCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence            96 8899998752      489999966  689999999999999998 65

>2zc0_A Alanine glyoxylate transaminase; alanine:glyoxylate aminotransferase, archaea, thermococcus L transferase; HET: PMP; 2.30A {Thermococcus litoralis}

Probab=99.98  E-value=3.5e-31  Score=250.00  Aligned_cols=315  Identities=18%  Similarity=0.186  Sum_probs=223.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +|+.+++++......+.......++++.+++++    |    .+++++|+|+++|++.+++++     .++|     |+|
T Consensus        56 ~a~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~~~~~g~~~~~~~v~~t~g~t~a~~~~~~~~-----~~~g-----d~v  125 (407)
T 2zc0_A           56 EIAKEVLEKEPKSVMYTPANGIPELREELAAFLKKYDHLEVSPENIVITIGGTGALDLLGRVL-----IDPG-----DVV  125 (407)
T ss_dssp             HHHHHHHHHCGGGGSCCCTTCCHHHHHHHHHHHHHHSCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEE
T ss_pred             HHHHHHHhhccccccCCCCCCCHHHHHHHHHHHHHhcCCCCCcceEEEecCHHHHHHHHHHHh-----cCCC-----CEE
Confidence            455566655321111122234566666666655    6    468999999999999999988     4567     999


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHh---cCCcEEEEE-EccccCCCCccc
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKE---SGDQIAGFL-FEPIQGEAGVII  145 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~---~~~~~~~vi-~~~~~~~~g~~~  145 (374)
                      ++..|+||+........+..             +..++.    .|+++|++++++   ..+++++++ +++++|++|.+.
T Consensus       126 l~~~p~~~~~~~~~~~~g~~-------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~~nptG~~~  192 (407)
T 2zc0_A          126 ITENPSYINTLLAFEQLGAK-------------IEGVPVDNDGMRVDLLEEKIKELKAKGQKVKLIYTIPTGQNPMGVTM  192 (407)
T ss_dssp             EEEESCCHHHHHHHHTTTCE-------------EEEEEEETTEECHHHHHHHHHHHHHTTCCEEEEEECCSSCTTTCCCC
T ss_pred             EEeCCChHHHHHHHHHcCCE-------------EEEcccCCCCCCHHHHHHHHHhhhcccCCceEEEECCCCCCCCCcCC
Confidence            99999999875544332211             111111    279999999872   113678875 556788888876


Q ss_pred             CChhHHHHHHHHHHhcCCEEEEeccccCCcccccC-cccccCC---CCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259          146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWEE---VRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       146 ~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~---~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~  221 (374)
                       +.+++++|.++|++||++||+||+|+++.+.|.. .....++   ....+.|+||.+++|+ |+||+++++++.+.+..
T Consensus       193 -~~~~l~~i~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~  270 (407)
T 2zc0_A          193 -SMERRKALLEIASKYDLLIIEDTAYNFMRYEGGDIVPLKALDNEGRVIVAGTLSKVLGTGF-RIGWIIAEGEILKKVLM  270 (407)
T ss_dssp             -CHHHHHHHHHHHHHHTCEEEEECTTTTSBSSCSSCCCGGGGCSSCCEEEEEESTTTTCTTS-CCEEEECCHHHHHHHHH
T ss_pred             -CHHHHHHHHHHHHHcCCEEEEECCCcccccCCCCCCChhhcCCCCCEEEEcccccccCCCc-ceEEEecCHHHHHHHHH
Confidence             7888999999999999999999999987655542 2222222   1224558999999998 99999999998888876


Q ss_pred             CCCCCCCCCCHHHHHHHHHHHHHH--h-h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259          222 GEHGSTFGGNPLASAVAIASLDVI--R-D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP  296 (374)
Q Consensus       222 ~~~~~~~~~~~~~~~aa~~al~~~--~-~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  296 (374)
                      .....+++.+++++.++.++++..  . .  +...++++++.+++.+.|++..   |++....+..+.++|+.++...  
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~---~~~~~~~~~~~~~~~~~~~~~~--  345 (407)
T 2zc0_A          271 QKQPIDFCAPAISQYIALEYLKRGYFEKYHLEGALLGYKEKRDIMLKALENHL---PNAEFTKPIAGMFVMFFLPEGA--  345 (407)
T ss_dssp             HHTTTTSSSCHHHHHHHHHHHHTTHHHHHTTTTHHHHHHHHHHHHHHHHHHHC---TTSCBCCCSBSSEEEEECSTTC--
T ss_pred             HHHhhcCCCCHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHHHHHHHHHHHhC---CCCEEecCCCcEEEEEEcCCCC--
Confidence            555566777999999888888753  1 1  2456666777777777776542   2221112335678888886543  


Q ss_pred             hhHHHHHHHHHHC-CeEeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          297 VSAYDICLKMKER-GILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       297 ~~~~~~~~~l~~~-Gi~v~~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       +..++.+.|.++ ||.+.++        ..+++||+++.. +++++++++++|+++++ ++
T Consensus       346 -~~~~l~~~l~~~~gi~v~~g~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~  404 (407)
T 2zc0_A          346 -DGISFANELMEREGVVVVPGKPFYTDESGKNAIRLNFSRP-SKEEIPIGIKKLAKLYK-EK  404 (407)
T ss_dssp             -CHHHHHHHHHHHTCEECBCSGGGCSSSCCTTEEEEECSSS-CTTHHHHHHHHHHHHHH-HH
T ss_pred             -CHHHHHHHHHHhCCeEEECchhccCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH-HH
Confidence             678899999998 9999875        257999998766 89999999999999987 54

>3b46_A Aminotransferase BNA3; kynurenine aminotransferase, LLP, PLP, cytoplasm, mitochondrion, pyridoxal phosphate; HET: LLP; 2.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.6e-31  Score=254.06  Aligned_cols=300  Identities=13%  Similarity=0.155  Sum_probs=211.4

Q ss_pred             CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ++++.+++.+.+.+|.    +++++|+|+++|++.+++++     ..+|     |+|++.+|+|+++...+...+.....
T Consensus        99 ~lr~~ia~~l~~~~g~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~  168 (447)
T 3b46_A           99 SLINSLIKLYSPIYNTELKAENVTVTTGANEGILSCLMGL-----LNAG-----DEVIVFEPFFDQYIPNIELCGGKVVY  168 (447)
T ss_dssp             HHHHHHHHHHTTTTTSCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHhcCCCCChhhEEEeCCHHHHHHHHHHHH-----cCCC-----CEEEEeCCCchhHHHHHHHcCCEEEE
Confidence            4455566665554442    58999999999999999988     5667     99999999999876655444332211


Q ss_pred             cccCCCCC----CCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLL----PGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~----~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .. ..+..    .......+ .|+++|+++++   ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|
T Consensus       169 v~-~~~~~~~~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~l~~~~~~~li~De~~  243 (447)
T 3b46_A          169 VP-INPPKELDQRNTRGEEWTIDFEQFEKAIT---SKTKAVIINTPHNPIGKVF-TREELTTLGNICVKHNVVIISDEVY  243 (447)
T ss_dssp             EE-EECCGGGGTSCBCSTTSEECHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             Ee-CCCccccccccccccCcccCHHHHHHhhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCcEEEEeccc
Confidence            11 00000    00000011 27899988886   5789999999999999876 7999999999999999999999999


Q ss_pred             cCCcccccCcccc-----cCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          172 SGLARSGRMLASD-----WEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       172 ~~~~~~g~~~~~~-----~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      +++.+.|....+.     ..+....+.|+||.++ +|+ |+||+++ ++++++.+.......+++.+++++.++.++++.
T Consensus       244 ~~~~~~g~~~~~~~~~~~~~~~~i~i~S~sK~~~~~G~-riG~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~a~~~aL~~  322 (447)
T 3b46_A          244 EHLYFTDSFTRIATLSPEIGQLTLTVGSAGKSFAATGW-RIGWVLSLNAELLSYAAKAHTRICFASPSPLQEACANSIND  322 (447)
T ss_dssp             TTCBCSSCCCCGGGSCHHHHTTEEEEEEHHHHTTCTTS-CCEEEECSCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHH
T ss_pred             hhcccCCCCcCHHHcCCCCCCcEEEEecCchhcCCcch-hhEEEEeCCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhC
Confidence            9876655322221     1234445669999999 799 9999999 999888876544455778899999999999887


Q ss_pred             Hhhhc----HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC------------chhHHHHHHHHH-
Q 017259          245 IRDEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL------------PVSAYDICLKMK-  307 (374)
Q Consensus       245 ~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~------------~~~~~~~~~~l~-  307 (374)
                      ...++    +.++++++++++.+.|+++     ++....+..+.++|+.++....            ..+..++++.|. 
T Consensus       323 ~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~l~~  397 (447)
T 3b46_A          323 ALKIGYFEKMRQEYINKFKIFTSIFDEL-----GLPYTAPEGTYFVLVDFSKVKIPEDYPYPEEILNKGKDFRISHWLIN  397 (447)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHHHHHHHHH-----TCCEECCSBSSEEEEECTTCCCCTTCCCCGGGSSSCHHHHHHHHHHH
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHHC-----CCeecCCCeeEEEEEecccccCccccccccccccCCCHHHHHHHHHH
Confidence            53333    4555666666666666654     2222223446778888764200            015678999887 


Q ss_pred             HCCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          308 ERGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       308 ~~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++||.+.|+.           .+++||+++  .+++++++++++|++
T Consensus       398 ~~gV~v~pg~~f~~~~~~~~~~~~iRls~~--~~~e~l~~~~~~l~~  442 (447)
T 3b46_A          398 ELGVVAIPPTEFYIKEHEKAAENLLRFAVC--KDDAYLENAVERLKL  442 (447)
T ss_dssp             HTCEECBCGGGGSCGGGGGGGTTEEEEECC--SCHHHHHHHHHHGGG
T ss_pred             hCCEEEECchHhCCCCccCCCCCEEEEEEe--CCHHHHHHHHHHHHH
Confidence            5799998752           589999965  589999999998876

>3tqx_A 2-amino-3-ketobutyrate coenzyme A ligase; energy metabolism, transferase; HET: PLP; 2.30A {Coxiella burnetii}

Probab=99.97  E-value=6e-31  Score=247.53  Aligned_cols=308  Identities=18%  Similarity=0.230  Sum_probs=232.7

Q ss_pred             hHHHHHHHhccccCc-----CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+..+..+     .+..+...+++++++++++.++.++++||++|+..+++.+     .++|     |.|++.
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~l~~~-----~~~g-----d~v~~~  133 (399)
T 3tqx_A           64 KTAQTVVEQYGFGMASVRFICGTQTIHKELEKDISEFLGTDDTILYSSCFDANGGLFETL-----LGPE-----DAIISD  133 (399)
T ss_dssp             HHHHHHHHHHCSCCCSCCCCCCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH-----CCTT-----CEEEEE
T ss_pred             HHHHHHHHHhCCCCCCcCccccCchHHHHHHHHHHHHHCCCcEEEECchHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence            456666665433211     1234568899999999999888888889999999998877     5667     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC---cEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      .|+|.+........+             ..+..+++.|+++++++++++.+   +++++++++++|++|.+.+    +++
T Consensus       134 ~~~~~~~~~~~~~~g-------------~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----l~~  196 (399)
T 3tqx_A          134 ELNHASIIDGIRLCK-------------AQRYRYKNNAMGDLEAKLKEADEKGARFKLIATDGVFSMDGIIAD----LKS  196 (399)
T ss_dssp             TTCCHHHHHHHHSCC-------------SEEEEECTTCTTHHHHHHHHHHTTTCSSEEEEEESEETTTTEECC----HHH
T ss_pred             CcccHHHHHHHHHcC-------------CceeEeCCCCHHHHHHHHHhhhccCCCceEEEEeCCCCCCCCcCC----HHH
Confidence            999765443322221             23445555688999999986433   7999999999999999998    999


Q ss_pred             HHHHHHhcCCEEEEecccc-CC-cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--C
Q 017259          154 VRDLCSKYNILMIADEIQS-GL-ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--G  225 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~-~~-~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~  225 (374)
                      |.++|++||++||+||+|+ ++ +..+.. ....++.  .+|++  |+||+++ |. ++||+++++++.+.+.....  .
T Consensus       197 i~~l~~~~~~~li~De~~~~~~~~~~~~~-~~~~~~~~~~~di~~~s~sK~~~-g~-~gG~~~~~~~~~~~~~~~~~~~~  273 (399)
T 3tqx_A          197 ICDLADKYNALVMVDDSHAVGFIGENGRG-TPEYCGVADRVDILTGTLGKALG-GA-SGGYTSGHKEIIEWLRNRSRPYL  273 (399)
T ss_dssp             HHHHHHHTTCEEEEECTTTTTTSSTTSCC-HHHHHTCTTCCSEEEEESSSSSC-SS-CCEEEEECHHHHHHHHHHCHHHH
T ss_pred             HHHHHHHcCCEEEEECCccccccCCCCCc-hHHhhCCCCCCcEEEecchHhcc-cC-ceEEEEcCHHHHHHHHHhCccee
Confidence            9999999999999999996 43 333322 2333343  56777  8999998 66 78999999998888765322  2


Q ss_pred             CCCCCCHHHHHHHHHHHHHHh--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          226 STFGGNPLASAVAIASLDVIR--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      .+.+.+++.++++.++++...  .++..++++++.+++.+.|+++.  ++ .   .++.+.++++.++...   +..+++
T Consensus       274 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~---~~~~~~~~~~~~~~~~---~~~~~~  344 (399)
T 3tqx_A          274 FSNTVAPVIVATSLKVLELLKTEGPQLRKQLQENSRYFRAGMEKLG--FQ-L---VPGNHPIIPVMLGDAQ---LATNMA  344 (399)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--CC-B---CCCSSSEEEEEEECHH---HHHHHH
T ss_pred             ccCCCcHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHcC--CC-c---CCCCCCEEEEEeCCHH---HHHHHH
Confidence            244678888889999988762  24678888888999988888773  21 2   2456788888886542   578999


Q ss_pred             HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.|.++||.+.+.       +.+++|++++...+++++++++++|+++++ ++
T Consensus       345 ~~l~~~gi~v~~~~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~  396 (399)
T 3tqx_A          345 DHLLQEGIYVVGFSYPVVPMGKARIRVQMSAVHTQQQLDRAIEAFGQVGK-KL  396 (399)
T ss_dssp             HHHHHTTEECCEECTTTSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred             HHHHHCCCEEeeeCCCCCCCCCceEEEEeecCCCHHHHHHHHHHHHHHHH-Hh
Confidence            9999999999853       346999999888999999999999999998 65

>3nra_A Aspartate aminotransferase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: LLP; 2.15A {Rhodobacter sphaeroides}

Probab=99.97  E-value=5.9e-32  Score=255.18  Aligned_cols=320  Identities=14%  Similarity=0.142  Sum_probs=219.2

Q ss_pred             hHHHHHHHhc---cccCcCCCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKL---TLSSRAFYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~---~~~~~~~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +|+.+++.+.   .+....+..++++++++++++++|.     +++++++||++|++.+++++     ..+|     |+|
T Consensus        60 ~a~~~~~~~~~~~~y~~~~g~~~l~~~l~~~l~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~v  129 (407)
T 3nra_A           60 DLFSAGVQSGGVQAYTEYRGDLGIRDLLAPRLAAFTGAPVDARDGLIITPGTQGALFLAVAAT-----VARG-----DKV  129 (407)
T ss_dssp             HHHHHHHHHTHHHHSCCTTCCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHTT-----CCTT-----CEE
T ss_pred             HHHHHHHhcCCCCCcCCCCCCHHHHHHHHHHHHHHhCCCCCCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----CEE
Confidence            4666666542   1222334456778899999887765     79999999999999999877     5667     999


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      ++..|+|++....+...+....... ..+.  ......+ .|++++++++++   +++++++++++|++|.+. +.+.++
T Consensus       130 l~~~~~~~~~~~~~~~~g~~~~~~~-~~~~--~~~~~~~~~d~~~l~~~l~~---~~~~v~~~~p~nptG~~~-~~~~l~  202 (407)
T 3nra_A          130 AIVQPDYFANRKLVEFFEGEMVPVQ-LDYV--SADETRAGLDLTGLEEAFKA---GARVFLFSNPNNPAGVVY-SAEEIG  202 (407)
T ss_dssp             EEEESCCTHHHHHHHHTTCEEEEEE-BCCC--SSCCSSCCBCHHHHHHHHHT---TCCEEEEESSCTTTCCCC-CHHHHH
T ss_pred             EEcCCcccchHHHHHHcCCEEEEee-cccc--cccCcCCCcCHHHHHHHHhh---CCcEEEEcCCCCCCCccc-CHHHHH
Confidence            9999999876655544432211110 0000  0000000 179999999984   677888888888899777 799999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCc-ccccCC-----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCC
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRML-ASDWEE-----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHG  225 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~-----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~  225 (374)
                      +|.++|++||+++|+||+|+++.+.|..+ .....+     ....+.|+||.++ +|+ |+||+++++++.+.+......
T Consensus       203 ~i~~~~~~~~~~li~Dea~~~~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~  281 (407)
T 3nra_A          203 QIAALAARYGATVIADQLYSRLRYAGASYTHLRAEAAVDAENVVTIMGPSKTESLSGY-RLGVAFGSRAIIARMEKLQAI  281 (407)
T ss_dssp             HHHHHHHHHTCEEEEECTTTTSBCTTCCCCCGGGCTTSCGGGEEEEECSSSTTCCGGG-CCEEEEECHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEEccccccccCCCCCCChhhcCcccCCcEEEEeCcccccCCCee-eEEEEEcCHHHHHHHHHHHhh
Confidence            99999999999999999999876655432 222221     1223558999999 788 999999999988888765455


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHH
Q 017259          226 STFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDI  302 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~  302 (374)
                      .+++.++++++++.++++....  ++..++++++.+++.+.|+    .+|++.......+.++|+.++. ..   +..++
T Consensus       282 ~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~  354 (407)
T 3nra_A          282 VSLRAAGYSQAVLRGWFDEAPGWMEDRIARHQAIRDELLHVLR----GCEGVFARTPQAGSYLFPRLPKLAV---APAEF  354 (407)
T ss_dssp             HTSSSCHHHHGGGGGTTCCCTTHHHHHHHHHHHHHHHHHHHHH----TSTTCBCCCCSBSSEECCBCCCBSS---CHHHH
T ss_pred             hccCCChHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHh----cCCCceeccCCeeEEEEEeCCCCCC---CHHHH
Confidence            5677788888777766652111  1233444444444444443    3332222122335677776654 22   67889


Q ss_pred             HHHHHH-CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMKE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~~-~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.|++ +||.++++      ..+++||+++  .+++++++++++|+++++ ++
T Consensus       355 ~~~l~~~~gi~v~~g~~~~~~~~~~iRis~~--~~~~~i~~~~~~l~~~~~-~~  405 (407)
T 3nra_A          355 VKILRLQAGVVVTPGTEFSPHTADSVRLNFS--QDHEAAVAAARRIVTLVE-RY  405 (407)
T ss_dssp             HHHHHHHHCEECEEGGGTCTTCTTBEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHhCCEEEeCchhhCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHH-Hh
Confidence            999976 59999874      3689999976  499999999999999998 54

>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase; PLP-dependent transferase-like fold, structural genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}

Probab=99.97  E-value=4.5e-31  Score=246.59  Aligned_cols=310  Identities=14%  Similarity=0.109  Sum_probs=218.8

Q ss_pred             hHHHHHHHhccc-cCcCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++.+..+ +.+.+ .++++.+++.+.+.+    ..+++++|+|+++|++.+++.+     .++|     |+|++.
T Consensus        43 ~a~~~~~~~~~~~y~~~~-~~lr~~la~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~-----~~~g-----d~vl~~  111 (377)
T 3fdb_A           43 QAITDAVQREAFGYQPDG-SLLSQATAEFYADRYGYQARPEWIFPIPDVVRGLYIAIDHF-----TPAQ-----SKVIVP  111 (377)
T ss_dssp             HHHHHHHHTTCCSSCCSS-CCHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SCTT-----CCEEEE
T ss_pred             HHHHHHHHcCCCCCCCCC-HHHHHHHHHHHHHHhCCCCCHHHEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEc
Confidence            466666665322 22222 556666777666543    3568999999999999999988     5667     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      .|+|++....+...+..             +..++.   .|++++++++++   +++++++++++|++|.+. +.+.+++
T Consensus       112 ~~~~~~~~~~~~~~g~~-------------~~~~~~~~~~d~~~l~~~l~~---~~~~v~i~~p~nptG~~~-~~~~l~~  174 (377)
T 3fdb_A          112 TPAYPPFFHLLSATQRE-------------GIFIDATGGINLHDVEKGFQA---GARSILLCNPYNPLGMVF-APEWLNE  174 (377)
T ss_dssp             ESCCTHHHHHHHHHTCC-------------EEEEECTTSCCHHHHHHHHHT---TCCEEEEESSBTTTTBCC-CHHHHHH
T ss_pred             CCCcHhHHHHHHHcCCE-------------EEEccCCCCCCHHHHHHHhcc---CCCEEEEeCCCCCCCCCC-CHHHHHH
Confidence            99999876655544322             222232   289999999984   577888888889999877 7888999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccc-cC-ccccc---CCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSG-RM-LASDW---EEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGS  226 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g-~~-~~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~  226 (374)
                      |.++|++||+++|+||+|+++.+.| .. ..+..   .+....+.|+||.++ +|+ |+||++. ++++.+.+.......
T Consensus       175 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~  253 (377)
T 3fdb_A          175 LCDLAHRYDARVLVDEIHAPLVFDGQHTVAAGVSDTAASVCITITAPSKAWNIAGL-KCAQIIFSNPSDAEHWQQLSPVI  253 (377)
T ss_dssp             HHHHHHHTTCEEEEECTTGGGBSSSCCCCGGGSCHHHHHHEEEEECSTTTTTCGGG-CCEEEECCSHHHHHHHHHSCHHH
T ss_pred             HHHHHHHcCCEEEEEcccchhhcCCCCCcccHHHccCCCcEEEEEeChHhccCcch-hheEEEeCCHHHHHHHHHHHHhh
Confidence            9999999999999999999876665 21 11111   111234568999997 788 9998765 788888877654555


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +++.++++++++.++++...+  ++..++++++.+++.+.|++.   +|++.......+.+.|+.++...   ...++++
T Consensus       254 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~  327 (377)
T 3fdb_A          254 KDGASTLGLIAAEAAYRYGTDFLNQEVAYLKNNHDFLLHEIPKR---IPGAKITPMQATYLMWIDFRDTT---IEGSPSE  327 (377)
T ss_dssp             HCCCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---STTCEECCCSBCSEEEEECTTSC---CCSCHHH
T ss_pred             cCCCCHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHhh---CCCceEecCCeeEEEEEECcccC---CCHHHHH
Confidence            678899999999988875322  244555666666666666553   33222222223444577776532   2256788


Q ss_pred             HHHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|+++ ||.++++.      .+++||+++  .+++++++++++|+++++ ++
T Consensus       328 ~l~~~~gi~v~~g~~~~~~~~~~~Ris~~--~~~e~i~~~l~~l~~~l~-~~  376 (377)
T 3fdb_A          328 FFIEKAKVAMNDGAWFGEDGTGFCRLNFA--TSREVLEEAIDRMAKAVS-HH  376 (377)
T ss_dssp             HHHHHHCEECEEGGGGCGGGTTEEEEECC--SCHHHHHHHHHHHHHHHT-TC
T ss_pred             HHHHhCCEEecCChhccCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHh-hc
Confidence            88876 99998753      589999966  589999999999999997 54

>1gd9_A Aspartate aminotransferase; pyridoxal enzyme, temperature dependence O substrate recognition; HET: PLP; 1.80A {Pyrococcus horikoshii} SCOP: c.67.1.1 PDB: 1gde_A* 1dju_A*

Probab=99.97  E-value=6.6e-31  Score=246.64  Aligned_cols=295  Identities=13%  Similarity=0.149  Sum_probs=210.4

Q ss_pred             cHHHHHHHHhccc----C----CCe-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           22 KFPVFAERLTSMF----G----YDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~----~~~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ...++++.+++++    |    .++ +++|+||++|++.+++++     ..+|     |+|++.+|+||+....+...+.
T Consensus        64 g~~~l~~~la~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~  133 (389)
T 1gd9_A           64 GLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-----LKDG-----EEVLIPTPAFVSYAPAVILAGG  133 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-----CCTT-----CEEEEEESCCTTHHHHHHHHTC
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCCeEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHCCC
Confidence            3455555555544    5    468 999999999999999877     4567     9999999999997655443332


Q ss_pred             CccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .....    +....   -.+ -|+++++++++   ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|
T Consensus       134 ~~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~  202 (389)
T 1gd9_A          134 KPVEV----PTYEE---DEFRLNVDELKKYVT---DKTRALIINSPCNPTGAVL-TKKDLEEIADFVVEHDLIVISDEVY  202 (389)
T ss_dssp             EEEEE----ECCGG---GTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTT
T ss_pred             EEEEe----ccCCc---cCCCCCHHHHHHhcC---cCceEEEEECCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEehhh
Confidence            21111    10000   011 17899998886   4688888888888899776 7899999999999999999999999


Q ss_pred             cCCccccc-CcccccC-C-CCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          172 SGLARSGR-MLASDWE-E-VRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       172 ~~~~~~g~-~~~~~~~-~-~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      +++.+.|. ......+ + ...+  +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++..
T Consensus       203 ~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~  281 (389)
T 1gd9_A          203 EHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW-RLGFVAAPSWIIERMVKFQMYNATCPVTFIQYAAAKALKDE  281 (389)
T ss_dssp             TTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHTCH
T ss_pred             hhcccCCCCCCCHhhccCCCCCEEEEecChhhcCCccc-ceEEEEECHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhCC
Confidence            98766554 2222222 2 1224  448999998 788 99999999998888876555667788999999988888754


Q ss_pred             hh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHH-HCCeEeccCC--
Q 017259          246 RD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMK-ERGILAKPTH--  317 (374)
Q Consensus       246 ~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~-~~Gi~v~~~~--  317 (374)
                      ..    +++.++++++.+++.+.|++.  .+. ..  .+..+.++|+.++. ..   +..++.+.|. ++||.+.++.  
T Consensus       282 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~  353 (389)
T 1gd9_A          282 RSWKAVEEMRKEYDRRRKLVWKRLNEM--GLP-TV--KPKGAFYIFPRIRDTGL---TSKKFSELMLKEARVAVVPGSAF  353 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHT--TCC-CC--CCCBTTEECCBCGGGTC---CHHHHHHHHHHHTCEECEEGGGG
T ss_pred             CcchHHHHHHHHHHHHHHHHHHHHHHc--CCe-ec--CCCeeeEEEEeccCCCC---CHHHHHHHHHHhCCEEEeCchhh
Confidence            33    234455566666666666554  121 11  12235566766653 22   5788999998 8999998752  


Q ss_pred             ----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 ----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                          .+++||+++  .+++++++++++|+++++ +.
T Consensus       354 ~~~~~~~iRi~~~--~~~~~i~~~l~~l~~~~~-~~  386 (389)
T 1gd9_A          354 GKAGEGYVRISYA--TAYEKLEEAMDRMERVLK-ER  386 (389)
T ss_dssp             CGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HT
T ss_pred             CCCCCCeEEEEec--CCHHHHHHHHHHHHHHHH-hc
Confidence                579999966  489999999999999987 54

>3ffh_A Histidinol-phosphate aminotransferase; APC88260, listeria in CLIP11262, structural genomics, PSI-2; 2.31A {Listeria innocua} SCOP: c.67.1.0

Probab=99.97  E-value=3.6e-30  Score=239.37  Aligned_cols=298  Identities=12%  Similarity=0.132  Sum_probs=210.1

Q ss_pred             HHHHHHHhccccCcCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            3 ALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         3 a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      .+.+++.+.......|+.+...+++++++++++.  +++++++|++++++.+++.+     .++|     |+|++..|+|
T Consensus        49 ~v~~a~~~~~~~~~~y~~~~~~~lr~~la~~~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~  118 (363)
T 3ffh_A           49 KVAAIQANSSVETEIYPDGWASSLRKEVADFYQLEEEELIFTAGVDELIELLTRVL-----LDTT-----TNTVMATPTF  118 (363)
T ss_dssp             HHHHHHHTCBSCCCBC----CHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CSTT-----CEEEEEESSC
T ss_pred             HHHHHHHHHHHHhhcCCCcchHHHHHHHHHHhCCChhhEEEeCCHHHHHHHHHHHH-----ccCC-----CEEEEcCCCh
Confidence            3455555433333345566778999999998864  68999999999999999988     5667     9999999999


Q ss_pred             CCcccccccccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      ++....+...+..             +..++.+     |+++++++++   ++++++++++++|++|.+.+ .+.+.+|+
T Consensus       119 ~~~~~~~~~~g~~-------------~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~-~~~l~~l~  181 (363)
T 3ffh_A          119 VQYRQNALIEGAE-------------VREIPLLQDGEHDLEGMLNAID---EKTTIVWICNPNNPTGNYIE-LADIQAFL  181 (363)
T ss_dssp             HHHHHHHHHHTCE-------------EEEEECCTTSCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC-HHHHHHHH
T ss_pred             HHHHHHHHHcCCE-------------EEEecCCCCCCcCHHHHHHhcc---cCCCEEEEeCCCCCcCCCcC-HHHHHHHH
Confidence            8866555444322             2222222     8999999886   57999999999999998885 44455555


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccc-cCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASD-WEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG  230 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~  230 (374)
                      +.|++ |+++|+||+|+++.+ +...... ......+   +.|+||.++ +|+ |+||+++++++.+.+....  .+++.
T Consensus       182 ~~~~~-~~~li~De~~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~--~~~~~  256 (363)
T 3ffh_A          182 DRVPS-DVLVVLDEAYIEYVT-PQPEKHEKLVRTYKNLIITRTFSKIYGLASA-RVGYGIADKEIIRQLNIVR--PPFNT  256 (363)
T ss_dssp             TTSCT-TSEEEEECTTGGGCS-SCCCCCGGGGGTCTTEEEEEESSSTTCCSSC-CCEEEEECHHHHHHHHHTC--CSCCC
T ss_pred             HhCCC-CcEEEEeCchHhhcC-ccccCHHHHhhcCCCEEEEeechhhhcCchh-ceeeeecCHHHHHHHHHhC--CCCCC
Confidence            44444 999999999998765 4332222 1122222   458999998 798 9999999999988887543  36788


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      +.++++++.++++.... ++..++++++.+++.+.|++    ++++ ...++.+.++++.++.     +..++.+.|.++
T Consensus       257 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~l~~----~~g~-~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~  326 (363)
T 3ffh_A          257 TSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKR----FEKV-KLYPANGNFVLIDLGI-----EAGTIFSYLEKN  326 (363)
T ss_dssp             BHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHH----CTTC-EECCCCSSEEEEECSS-----CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhh----CCCc-eECCCCCeEEEEECCC-----CHHHHHHHHHHC
Confidence            99999999988863211 13344444555555555544    2222 2234567888887764     478899999999


Q ss_pred             CeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          310 GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       310 Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ||.++++.    ++++||+++   +++|+++++++|++++
T Consensus       327 gi~v~~g~~~~~~~~iRis~~---~~~~i~~~~~~l~~~l  363 (363)
T 3ffh_A          327 GYITRSGAALGFPTAVRITIG---KEEDNSAVIALLEKLL  363 (363)
T ss_dssp             TEECEETTTTTCTTEEEEECC---CHHHHHHHHHHHHHHC
T ss_pred             CeEEEeCccCCCCCeEEEECC---CHHHHHHHHHHHHHhC
Confidence            99999864    689999955   8999999999998763

>2r2n_A Kynurenine/alpha-aminoadipate aminotransferase mitochondrial; alpha & beta protein, PLP-dependent transferase, aminotransf mitochondrion; HET: PMP KYN; 1.95A {Homo sapiens} PDB: 2qlr_A* 3dc1_A* 3ue8_A* 2vgz_A* 2xh1_A*

Probab=99.97  E-value=1.8e-30  Score=246.57  Aligned_cols=306  Identities=11%  Similarity=0.072  Sum_probs=214.3

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCC-----------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGY-----------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~-----------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      |....+..++++.+++++.+..|.           +++++|+|+++|++.+++++     .++|     |+|++.+|+|+
T Consensus        74 Y~~~~G~~~lr~~ia~~l~~~~g~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~  143 (425)
T 2r2n_A           74 YSPSAGIPELLSWLKQLQIKLHNPPTIHYPPSQGQMDLCVTSGSQQGLCKVFEMI-----INPG-----DNVLLDEPAYS  143 (425)
T ss_dssp             CCCTTCCHHHHHHHHHHHHHHHCCTTTTSCGGGTCEEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCH
T ss_pred             CCCCCCCHHHHHHHHHHHHHhcCCCCccccccCCcCcEEEeCcHHHHHHHHHHHh-----CCCC-----CEEEEeCCCcH
Confidence            333345556677788877765542           48999999999999999988     5667     99999999998


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC---------CcEEEEEEc-cccCCCCcccCChhHH
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---------DQIAGFLFE-PIQGEAGVIIPPDGYL  151 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---------~~~~~vi~~-~~~~~~g~~~~~~~~l  151 (374)
                      +....+...+......    +...+     -.|+++|++++++++         +++++++++ +++|++|.+. +.+.+
T Consensus       144 ~~~~~~~~~g~~~~~v----~~~~~-----~~d~~~l~~~l~~~~~~~~~~~~~~~~~~v~~~~~~~NPtG~~~-~~~~l  213 (425)
T 2r2n_A          144 GTLQSLHPLGCNIINV----ASDES-----GIVPDSLRDILSRWKPEDAKNPQKNTPKFLYTVPNGNNPTGNSL-TSERK  213 (425)
T ss_dssp             HHHHHHGGGTCEEEEE----CEETT-----EECHHHHHHHHTTSCSTTSSSTTSCCCSEEEECCSSCTTTCCCC-CHHHH
T ss_pred             HHHHHHHHcCCEEEEe----CcCCC-----CCCHHHHHHHHHhhhccccccccCCCceEEEECCCCcCCCCCcC-CHHHH
Confidence            8765554433211110    10000     027899999997432         457788775 5788888776 79999


Q ss_pred             HHHHHHHHhcCCEEEEeccccCCcccccC-cccccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          152 KAVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       152 ~~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      ++|.++|++||++||+||+|+++.+.|.. .....+   +....+.||||.+++|+ |+||+++++++++.+.......+
T Consensus       214 ~~l~~~a~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~SK~~~~Gl-RiG~~~~~~~l~~~l~~~~~~~~  292 (425)
T 2r2n_A          214 KEIYELARKYDFLIIEDDPYYFLQFNKFRVPTFLSMDVDGRVIRADSFSKIISSGL-RIGFLTGPKPLIERVILHIQVST  292 (425)
T ss_dssp             HHHHHHHHHTTCEEEEECTTGGGBSSSSCCCCTGGGCTTSCEEEEEESTTTTCSTT-CCEEEEEEHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHcCCEEEEECCcccccCCCCCCCCccccCCCCCEEEEccchhhccCcc-ceEEEecCHHHHHHHHHHHHHhc
Confidence            99999999999999999999977555532 111112   22233459999999999 99999999998888876545567


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh---c----HHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhH
Q 017259          228 FGGNPLASAVAIASLDVIRDE---K----LAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~---~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      ++.+.+++.++.++++.+.++   +    ..++++++++++.+.|++.   +|+... ..+..|.++|+.++...   +.
T Consensus       293 ~~~~~~~q~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~~~~~~p~~g~~~~~~~~~~~---~~  366 (425)
T 2r2n_A          293 LHPSTFNQLMISQLLHEWGEEGFMAHVDRVIDFYSNQKDAILAAADKW---LTGLAEWHVPAAGMFLWIKVKGIN---DV  366 (425)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH---CSSSEEECCCSBSSEEEEEETTCS---CC
T ss_pred             CCCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEeCCCceEEEEEEeCCCC---CH
Confidence            788999999999988864322   2    2333344444444444432   333322 22345788888887532   33


Q ss_pred             HH-HHHHHHHCCeEeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YD-ICLKMKERGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~-~~~~l~~~Gi~v~~~~---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+ +.+.|.++||.+.++.         .+++||+++. .+++++++++++|+++++
T Consensus       367 ~~~~~~~l~~~gv~v~pg~~f~~~~~~~~~~iRis~~~-~~~~~i~~~~~~l~~~l~  422 (425)
T 2r2n_A          367 KELIEEKAVKMGVLMLPGNAFYVDSSAPSPYLRASFSS-ASPEQMDVAFQVLAQLIK  422 (425)
T ss_dssp             HHHHHTHHHHTTEECEEGGGGSSSTTSCCCEEEEECSS-CCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCcEEechhhhcCCCCCCCCEEEEEeCC-CCHHHHHHHHHHHHHHHH
Confidence            45 6788899999998742         4799999763 699999999999999987

>2zyj_A Alpha-aminodipate aminotransferase; alpha-aminoadipate aminotransferase; HET: PGU; 1.67A {Thermus thermophilus} PDB: 2egy_A* 2dtv_A* 2zg5_A* 2zp7_A* 2z1y_A* 3cbf_A*

Probab=99.97  E-value=2.6e-31  Score=250.15  Aligned_cols=313  Identities=15%  Similarity=0.136  Sum_probs=219.7

Q ss_pred             hHHHHHHHhccc-cCcCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTL-SSRAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +++.+++++... ...+.......++++.+++++|.  +++++++|++++++.+++++     .++|     |+|++..|
T Consensus        54 ~a~~~~~~~~~~~~~~y~~~~~~~~l~~~la~~~g~~~~~v~~~~g~~~al~~~~~~~-----~~~g-----d~Vl~~~p  123 (397)
T 2zyj_A           54 EAAARILREKGEVALQYSPTEGYAPLRAFVAEWIGVRPEEVLITTGSQQALDLVGKVF-----LDEG-----SPVLLEAP  123 (397)
T ss_dssp             HHHHHHHHHHHHHHTSCCCTTCCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEES
T ss_pred             HHHHHHHHhcchhhhCCCCCCCCHHHHHHHHHHhCCChhhEEEeccHHHHHHHHHHHh-----CCCC-----CEEEEeCC
Confidence            355555554221 11222234577888888888764  58999999999999999988     4567     99999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEE-EEccccCCCCcccCChhHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGF-LFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~v-i~~~~~~~~g~~~~~~~~l~~  153 (374)
                      +||+....+...+..             +..++.    .|+++|+++++++  +++++ ++++++|++|.+. +.+++++
T Consensus       124 ~y~~~~~~~~~~g~~-------------~~~~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~~nptG~~~-~~~~l~~  187 (397)
T 2zyj_A          124 SYMGAIQAFRLQGPR-------------FLTVPAGEEGPDLDALEEVLKRE--RPRFLYLIPSFQNPTGGLT-PLPARKR  187 (397)
T ss_dssp             CCHHHHHHHHTTCCE-------------EEEEEEETTEECHHHHHHHHHHC--CCSCEEECCBSCTTTCCBC-CHHHHHH
T ss_pred             CcHHHHHHHHHcCCE-------------EEecCcCCCCCCHHHHHHHHhhc--CCeEEEECCCCcCCCCCcC-CHHHHHH
Confidence            999876654443221             111111    2799999999853  56676 4567788888776 7889999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccC-cccccCCCC------CcEEEecccccCCccchhhheeCHHHHhhcCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRM-LASDWEEVR------PDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS  226 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~~~~------~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~  226 (374)
                      |.++|++||++||+||+|+++.+.|.. .....++..      ..+.|+||.+++|+ |+||+++++++.+.+.......
T Consensus       188 l~~~~~~~~~~li~De~~~~~~~~g~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~l~~~~~~~  266 (397)
T 2zyj_A          188 LLQMVMERGLVVVEDDAYRELYFGEARLPSLFELAREAGYPGVIYLGSFSKVLSPGL-RVAFAVAHPEALQKLVQAKQGA  266 (397)
T ss_dssp             HHHHHHHHTCCEEEECTTTTCBCSSCCCCCHHHHHHHHTCCCEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCEEEEeCCcccccCCCCCCCchhhhCcccCCCeEEEEecccccccccc-eeEEEecCHHHHHHHHHHHHhh
Confidence            999999999999999999987665542 222222111      22458999999888 9999999999888876543444


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCC-ceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          227 TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN-YVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      +++.+++++.++.++++....   ++..++++++.+++.+.|++.   +|. +....+..+.++|+.++...   +..++
T Consensus       267 ~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~g~~~~~~~~g~~~~~~~~~~~---~~~~~  340 (397)
T 2zyj_A          267 DLHTPMLNQMLVHELLKEGFSERLERVRRVYREKAQAMLHALDRE---VPKEVRYTRPKGGMFVWMELPKGL---SAEGL  340 (397)
T ss_dssp             HSSCCHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHHH---SCTTSEECCCSBSSEEEEECSTTC---CHHHH
T ss_pred             cCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHH---CCCCeEEccCCccEEEEEEcCCCC---CHHHH
Confidence            566789999888888764211   123344444555555555443   231 22212345778888886533   57889


Q ss_pred             HHHHHHCCeEeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMKERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.|.++||.+.++        ..+++||+++.. +++++++++++|+++++ ++
T Consensus       341 ~~~l~~~gi~v~~g~~f~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~  393 (397)
T 2zyj_A          341 FRRALEENVAFVPGGPFFANGGGENTLRLSYATL-DREGIAEGVRRLGRALK-GL  393 (397)
T ss_dssp             HHHHHHTTEEEEESGGGCTTSCCTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHCCCEEechHHhcCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence            99999999999874        358999998764 89999999999999987 54

>3dyd_A Tyrosine aminotransferase; PLP, SGC, structural genomics, structural genomics consortium, disease mutation, phenylalani catabolism; HET: PLP; 2.30A {Homo sapiens} PDB: 3pdx_A*

Probab=99.97  E-value=1.7e-30  Score=246.91  Aligned_cols=318  Identities=12%  Similarity=0.089  Sum_probs=218.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC-------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG-------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~-------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +|+.+++.+.. ...+.+.....++++.++++++       .+++++|+||++|++.+++.+     .++|     ++|+
T Consensus        78 ~a~~~~~~~~~-~~~y~~~~g~~~lr~~la~~~~~~~~~~~~~~v~~t~g~t~al~~~~~~l-----~~~g-----d~vl  146 (427)
T 3dyd_A           78 QAMKDALDSGK-YNGYAPSIGFLSSREEIASYYHCPEAPLEAKDVILTSGCSQAIDLCLAVL-----ANPG-----QNIL  146 (427)
T ss_dssp             HHHHHHHHHCC-SSSCCCTTCCHHHHHHHHHHHCBTTBCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEE
T ss_pred             HHHHHHHhcCc-CCCCCCCCCcHHHHHHHHHHHhhcCCCCChHHEEEecCcHHHHHHHHHHh-----cCCC-----CEEE
Confidence            34555554421 1122345567788888888765       568999999999999999998     4567     9999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      +..|+|+++...+...+....... +.+. .+..    -|+++++++++   ++++++++++++|++|.+. +++++++|
T Consensus       147 ~~~p~~~~~~~~~~~~g~~~~~~~-~~~~-~~~~----~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i  216 (427)
T 3dyd_A          147 VPRPGFSLYKTLAESMGIEVKLYN-LLPE-KSWE----IDLKQLEYLID---EKTACLIVNNPSNPCGSVF-SKRHLQKI  216 (427)
T ss_dssp             EEESCCTHHHHHHHHTTCEEEEEE-EEGG-GTTE----ECHHHHHSSCC---TTEEEEEEESSCTTTCCCC-CHHHHHHH
T ss_pred             EcCCCchhHHHHHHHcCCEEEEEe-cccc-cCCC----CCHHHHHHHhc---cCCCEEEEECCCCCCCCCC-CHHHHHHH
Confidence            999999887655544432211110 0000 0000    17888888876   4688888888888899776 89999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCc-ccccCCCCCcEE---Eeccccc-CCccchhhheeC-------HHHHhhcCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRML-ASDWEEVRPDMV---ILGKALG-GGVIPVSAVLAD-------KEVMLCIQPG  222 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~~~~~d~~---s~sK~~~-~G~~~~G~~~~~-------~~~~~~~~~~  222 (374)
                      .++|++||+++|+||+|+++++.|..+ .....+..++++   |+||.++ +|+ |+||++++       +++.+.+...
T Consensus       217 ~~~~~~~~~~~i~Deay~~~~~~g~~~~~~~~~~~~~~vi~~~S~sK~~~~~G~-riG~~~~~~~~~~~~~~i~~~l~~~  295 (427)
T 3dyd_A          217 LAVAARQCVPILADEIYGDMVFSDCKYEPLATLSTDVPILSCGGLAKRWLVPGW-RLGWILIHDRRDIFGNEIRDGLVKL  295 (427)
T ss_dssp             HHHHHHTTCCEEEECTTTTCBCSSCCCCCGGGGCSSCCEEEEEESTTTSSCGGG-CCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred             HHHHHHCCCEEEEEcCchhhccCCCcCccHHHhCCCCcEEEEeeccccCCCcCc-ceEEEEecCcchhhHHHHHHHHHHH
Confidence            999999999999999999987766533 333334444555   9999976 688 99998876       4566555432


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC--Cch
Q 017259          223 EHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA--LPV  297 (374)
Q Consensus       223 ~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~  297 (374)
                      . ..++++++++++++.++++....   ++..++++++++++.+.|++    +|++....+..+.++++.++...  .+.
T Consensus       296 ~-~~~~~~~~~~~~a~~~~L~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~p~~g~~~~~~l~~~~~~~~~  370 (427)
T 3dyd_A          296 S-QRILGPCTIVQGALKSILCRTPGEFYHNTLSFLKSNADLCYGALAA----IPGLRPVRPSGAMYLMVGIEMEHFPEFE  370 (427)
T ss_dssp             H-HHHCCSCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHH----STTEEEECCSBTTEEEEEECGGGCTTCS
T ss_pred             H-hccCCCCHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHhc----CCCceecCCCeeEEEEEecCHhhcCCCC
Confidence            1 12577899999999998875322   23445555555555555543    33332222344667777775210  011


Q ss_pred             hHHHHHHHHH-HCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          298 SAYDICLKMK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       298 ~~~~~~~~l~-~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +..++++.|+ ++||.+.++    .++++||++  ..+++++++++++|+++++ ++
T Consensus       371 ~~~~~~~~l~~~~gV~v~~g~~~~~~~~iRis~--~~~~e~i~~~l~~l~~~l~-~~  424 (427)
T 3dyd_A          371 NDVEFTERLVAEQSVHCLPATCFEYPNFIRVVI--TVPEVMMLEACSRIQEFCE-QH  424 (427)
T ss_dssp             SHHHHHHHHHHHHCEECEEGGGGTCTTEEEEES--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred             CHHHHHHHHHHHCCEEEECCcccCCCCeEEEEE--CCCHHHHHHHHHHHHHHHH-Hh
Confidence            5678999886 789999876    368999995  4799999999999999998 65

>3ly1_A Putative histidinol-phosphate aminotransferase; structural G joint center for structural genomics, JCSG; HET: MSE PLP CIT; 1.80A {Erwinia carotovora atroseptica}

Probab=99.97  E-value=3.1e-30  Score=238.90  Aligned_cols=286  Identities=16%  Similarity=0.135  Sum_probs=213.6

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+++++++++++  .+++++++|+++|++.+++.+     .++|     |+|++..|+|++....+...+..  
T Consensus        48 y~~~~~~~l~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~--  115 (354)
T 3ly1_A           48 YAKNEILMLGNKLAAHHQVEAPSILLTAGSSEGIRAAIEAY-----ASLE-----AQLVIPELTYGDGEHFAKIAGMK--  115 (354)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSSCTHHHHHHHHTTCE--
T ss_pred             CCCCchHHHHHHHHHHhCCChHHEEEeCChHHHHHHHHHHH-----hCCC-----CeEEECCCCchHHHHHHHHcCCE--
Confidence            456677899999999987  468999999999999999988     5667     99999999998876555443322  


Q ss_pred             ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                                 +..++.+     |+++++++++++ ++++++++++++|++|.+. +.+.+++|+++| +||+++|+||+
T Consensus       116 -----------~~~~~~~~~~~~d~~~l~~~l~~~-~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~  181 (354)
T 3ly1_A          116 -----------VTKVKMLDNWAFDIEGLKAAVAAY-SGPSIVYLVNPNNPTGTIT-PADVIEPWIASK-PANTMFIVDEA  181 (354)
T ss_dssp             -----------EEEECCCTTSCCCHHHHHHHHHTC-SSCEEEEEESSCTTTCCCC-CHHHHHHHHHTC-CTTEEEEEECT
T ss_pred             -----------EEEecCCCCCCCCHHHHHHHhccC-CCCCEEEEeCCCCCcCCCc-CHHHHHHHHHhC-CCCeEEEEecc
Confidence                       2222222     899999999853 4688999888899999888 566677777777 69999999999


Q ss_pred             ccCCcccccCccc-c---cC-CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRMLAS-D---WE-EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       171 ~~~~~~~g~~~~~-~---~~-~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |+++.+.+..... .   .. +....+.|+||.++ +|+ |+||+++++++.+.+.....  .++.+++++.++.++++.
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~--~~~~~~~~~~a~~~~l~~  258 (354)
T 3ly1_A          182 YAEFVNDPRFRSISPMITQGAENIILLKTFSKIHAMAGM-RVGYAVAHPTVIALMGRYVA--GEKINFSGVDAALASMND  258 (354)
T ss_dssp             TGGGCCCTTCCCSHHHHHTTCSSEEEEEESSSTTCCGGG-CCEEEECCHHHHHHHGGGTT--CSCCCHHHHHHHHHHTTC
T ss_pred             HHHhccccccCCHHHHhhhcCCCEEEEeeChhhccChhh-hheeeecCHHHHHHHHHhcC--CCCCCHHHHHHHHHHhcC
Confidence            9987655532111 1   11 22233458999998 798 99999999999888876433  378899999999888774


Q ss_pred             Hhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec---cCCCCE
Q 017259          245 IRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK---PTHDTI  320 (374)
Q Consensus       245 ~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~---~~~~~~  320 (374)
                      ... ++..++++++.+++.+.|++..  +. .   .++.+.++++.++.     +..++.+.|.++||.++   ....++
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~~l~~~~--~~-~---~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~v~g~~~~~~~~  327 (354)
T 3ly1_A          259 SAFITYSKKSNDVSRQILLKALEDLK--LP-Y---LPSEGNFVFHQLVV-----PLKDYQTHMADAGVLIGRAFPPADNW  327 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT--CC-B---CCCCSSEEEEECSS-----CHHHHHHHHHHTTEECCCCCTTCTTE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHCC--Ce-E---CCCCceEEEEECCC-----CHHHHHHHHHHCCEEEeecCCCCCCE
Confidence            311 2445666667777777776652  21 1   23467788887764     46889999999999988   113689


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||+++   +++++++++++|+++++
T Consensus       328 iRis~~---~~~~i~~~~~~l~~~l~  350 (354)
T 3ly1_A          328 CRISLG---TPQEMQWVADTMREFRK  350 (354)
T ss_dssp             EEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             EEEEcC---CHHHHHHHHHHHHHHHH
Confidence            999943   89999999999999987

>3g0t_A Putative aminotransferase; NP_905498.1, putative aspartate aminotransferase, structural genomics, joint center for structural genomics; HET: MSE LLP PE4; 1.75A {Porphyromonas gingivalis}

Probab=99.97  E-value=1.9e-30  Score=247.20  Aligned_cols=289  Identities=12%  Similarity=0.123  Sum_probs=212.4

Q ss_pred             HHHHHHHHhcccC--------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCcc--EEEEeccCCCCcccccccccC
Q 017259           23 FPVFAERLTSMFG--------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--IIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        23 ~~~l~~~l~~~~~--------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~--~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ..++++.++++++        .+++++|+|++++++.+++.+..   .++|     |  +|++..|+|++....+...+.
T Consensus        84 ~~~lr~~la~~~~~~~g~~~~~~~i~~t~g~t~al~~~~~~l~~---~~~g-----d~~~Vl~~~p~~~~~~~~~~~~g~  155 (437)
T 3g0t_A           84 LPELKQEASRFAKLFVNIDIPARACVPTVGSMQGCFVSFLVANR---THKN-----REYGTLFIDPGFNLNKLQCRILGQ  155 (437)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHHTT---SCTT-----CSCCEEEEESCCHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHhhCCCCCcccEEEeCCHHHHHHHHHHHHhc---CCCC-----CccEEEEeCCCcHhHHHHHHHcCC
Confidence            3566666666543        56899999999999999998830   1567     8  999999999887666554432


Q ss_pred             CccccccCCCCCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259           93 DNEAIRGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI  166 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li  166 (374)
                      .             +..++.+      |++++++++++  +++++++++.++|++|.+. +.+.+++|.++|++||++||
T Consensus       156 ~-------------~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li  219 (437)
T 3g0t_A          156 K-------------FESFDLFEYRGEKLREKLESYLQT--GQFCSIIYSNPNNPTWQCM-TDEELRIIGELATKHDVIVI  219 (437)
T ss_dssp             C-------------CEEEEGGGGCTTHHHHHHHHHHTT--TCCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEE
T ss_pred             E-------------EEEEeecCCCCccCHHHHHHHHhc--CCceEEEEeCCCCCCCCcC-CHHHHHHHHHHHHHCCcEEE
Confidence            2             2222221      78899999843  4678888877788899877 78889999999999999999


Q ss_pred             EeccccCCcccccCcc-------ccc---CCCCCcEEEeccccc-CCccchhhheeCHHHHh-h----------------
Q 017259          167 ADEIQSGLARSGRMLA-------SDW---EEVRPDMVILGKALG-GGVIPVSAVLADKEVML-C----------------  218 (374)
Q Consensus       167 ~Dea~~~~~~~g~~~~-------~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~-~----------------  218 (374)
                      +||+|+++.+.+....       ...   .+....+.|+||.++ +|+ |+||+++++++.+ .                
T Consensus       220 ~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (437)
T 3g0t_A          220 EDLAYFGMDFRKDYSHPGEPLYQPSVANYTDNYILALSSSKAFSYAGQ-RIGVLMISGKLYEREYPDLEESFGRLRFGEA  298 (437)
T ss_dssp             EECTTTTCCTTSCCCSTTSSCCCCCGGGTCSCEEEEEESTTTTSCGGG-CCEEEEECHHHHHCBCGGGHHHHSCSBHHHH
T ss_pred             EEcchhhcccCCCcCcccccchhhccCCCCCcEEEEEcCccCCCCccc-eeEEEEECHHHhhhhhhcccccccccchhHH
Confidence            9999997644432111       111   122222448999999 898 9999999999888 7                


Q ss_pred             -cCCCCCCCCCCCCHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceee------EE-EEeee
Q 017259          219 -IQPGEHGSTFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE------VR-GRGLF  285 (374)
Q Consensus       219 -~~~~~~~~~~~~~~~~~~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~------~~-~~g~~  285 (374)
                       +.......+++.+.+++.++.++++....     ++..++++++.+++.+.|+++     ++...      .+ ..+.+
T Consensus       299 ~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~  373 (437)
T 3g0t_A          299 LSSSALYALSSGATHSAQWGMAAMLKACNDGEYNFRDSVIEYGRKARIMKKMFLDN-----GFNIVYDKDGNEPLADGFY  373 (437)
T ss_dssp             HHTTHHHHHHSSSCHHHHHHHHHHHHHHHTTSCCHHHHHHHHHHHHHHHHHHHHTT-----TEEESSCEETTEECCSSSE
T ss_pred             HHHHHHhhhcCCCCHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHc-----CCEEeccccCCCCCceeEE
Confidence             66544445678899999999999987642     345566666666666666554     22222      23 46778


Q ss_pred             EEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          286 NAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       286 ~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+.++. .   +..++.+.|.++||.+.++.      ++++||+++.. +++++++++++|+++++
T Consensus       374 ~~~~~~~-~---~~~~l~~~L~~~gi~v~~~~~~~~~~~~~iRis~~~~-~~e~i~~~~~~l~~~~~  435 (437)
T 3g0t_A          374 FTVGYKG-M---DSSKLIEKFVRYGMCAITLKTTGSKRNEAMRICTSLL-PESQFPDLEKRLQMLNA  435 (437)
T ss_dssp             EEEEETT-C---CHHHHHHHHHHTTEECEESTTTTCCCTTCEEEECSSS-CGGGHHHHHHHHHHHHH
T ss_pred             EEEecCC-C---CHHHHHHHHHHcCeEEeeccccCCCCCCEEEEEEecC-CHHHHHHHHHHHHHHHh
Confidence            8888873 2   68899999999999998864      27899998844 99999999999998876

>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain, small C-TER domain, open alpha-beta structure., transferase; HET: PLP; 2.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.97  E-value=4.2e-30  Score=241.26  Aligned_cols=295  Identities=13%  Similarity=0.103  Sum_probs=204.7

Q ss_pred             cHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           22 KFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        22 ~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +++.+++.+.+.+|    .+++++|+|+++|++.+++++     ..+|     |+|++..|+||+....+...+......
T Consensus        69 lr~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~~~~~v  138 (390)
T 1d2f_A           69 FLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-----SETG-----EGVVIHTPAYDAFYKAIEGNQRTVMPV  138 (390)
T ss_dssp             HHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-----SCTT-----CEEEEEESCCHHHHHHHHHTTCEEEEE
T ss_pred             HHHHHHHHHHHhcCCCCCHHHEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCcHHHHHHHHHCCCEEEEe
Confidence            44555555554434    568999999999999999987     4567     999999999998766554433221111


Q ss_pred             ccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           98 RGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                          +...+.  -.+ .|+++|++++++  .+++++++++++|++|.+. +.+++++|.++|++||++||+||+|+++.+
T Consensus       139 ----~~~~~~--~~~~~d~~~l~~~l~~--~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~~~  209 (390)
T 1d2f_A          139 ----ALEKQA--DGWFCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVW-TCDELEIMADLCERHGVRVISDEIHMDMVW  209 (390)
T ss_dssp             ----ECEECS--SSEECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCC-CTTHHHHHHHHHHHTTCEEEEECTTTTCBC
T ss_pred             ----ecccCC--CccccCHHHHHHHhcc--CCCeEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEcccccccc
Confidence                100000  001 379999999873  2688888888888889776 788999999999999999999999998866


Q ss_pred             cccCcccccCCCCC---c-EEEeccccc-CCccchhhheeC-HHHHhhcCCCCC-CCCC-CCCHHHHHHHHHHHHHHhh-
Q 017259          177 SGRMLASDWEEVRP---D-MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEH-GSTF-GGNPLASAVAIASLDVIRD-  247 (374)
Q Consensus       177 ~g~~~~~~~~~~~~---d-~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~-~~~~-~~~~~~~~aa~~al~~~~~-  247 (374)
                      .|..+. ....+.+   | +.|+||.++ +|+ |+||++++ +++.+.+..... ..++ +.++++++++.++++...+ 
T Consensus       210 ~g~~~~-~~~~~~~~~~d~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  287 (390)
T 1d2f_A          210 GEQPHI-PWSNVARGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLSSPSVLALTAHIAAYQQGAPW  287 (390)
T ss_dssp             SSSCCC-CGGGTCCSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCCSCCHHHHHHHHHHHHHCHHH
T ss_pred             CCCCCc-CHHHcchhhHhhccCccHhhcccCh-hheEEEECCHHHHHHHHHHHhhhcccCCCCHHHHHHHHHHHhcCHHH
Confidence            554321 1111211   2 779999998 798 99999885 777777765433 4455 7789999988888875211 


Q ss_pred             -hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEe-eeEEEEeccC-CCchhHHHHHHHHH-HCCeEeccCC------
Q 017259          248 -EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKT-ALPVSAYDICLKMK-ERGILAKPTH------  317 (374)
Q Consensus       248 -~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~~~~~~~~~~-~~~~~~~~~~~~l~-~~Gi~v~~~~------  317 (374)
                       ++..++++++.+++.+.|++.   +|++ ....+.+ .++|+.++.. .   +..++.+.|. ++||.+.++.      
T Consensus       288 ~~~~~~~~~~~~~~l~~~L~~~---~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~f~~~~  360 (390)
T 1d2f_A          288 LDALRIYLKDNLTYIADKMNAA---FPEL-NWQIPQSTYLAWLDLRPLNI---DDNALQKALIEQEKVAIMPGYTYGEEG  360 (390)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHH---CSSC-CCCCCSBCSEEEEECGGGCC---CHHHHHHHHHHTTCEECEEGGGGCGGG
T ss_pred             HHHHHHHHHHHHHHHHHHHHhh---CCCC-EEecCCccEEEEEEccccCC---CHHHHHHHHHHHcCEEeeCccccCCCC
Confidence             133444555555555555442   3322 2223334 4457777642 2   5778999999 5799998752      


Q ss_pred             CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+++||+++.  +++++++++++|+++++
T Consensus       361 ~~~~Ris~~~--~~~~l~~~l~~l~~~l~  387 (390)
T 1d2f_A          361 RGFVRLNAGC--PRSKLEKGVAGLINAIR  387 (390)
T ss_dssp             TTEEEEECCS--CHHHHHHHHHHHHHHHH
T ss_pred             CCeEEEEecC--CHHHHHHHHHHHHHHHH
Confidence            5799999664  68899999999999987

>1vp4_A Aminotransferase, putative; structural genomics, joint center for structural genomics, J protein structure initiative, PSI; HET: MSE PLP; 1.82A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=5.2e-31  Score=250.35  Aligned_cols=298  Identities=17%  Similarity=0.191  Sum_probs=212.5

Q ss_pred             cHHHHHHHHhccc----C-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           22 KFPVFAERLTSMF----G-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ...++++.+++++    |     .+++++|+|++++++.+++++     ..+|     |+|++..|+|++....+...+.
T Consensus        86 g~~~lr~~la~~l~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~  155 (425)
T 1vp4_A           86 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-----LDDE-----SYCVLDDPAYLGAINAFRQYLA  155 (425)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHhccCCCCCCcccEEEeccHHHHHHHHHHHh-----CCCC-----CEEEEeCCCcHHHHHHHHHcCC
Confidence            3455555555544    6     358999999999999999988     5567     9999999999987665544332


Q ss_pred             CccccccCCCCCCCceeccC----CCHHHHHHHHHhc-----CCcEEEEE-EccccCCCCcccCChhHHHHHHHHHHhcC
Q 017259           93 DNEAIRGFGPLLPGHLKVDF----GDITALEKIFKES-----GDQIAGFL-FEPIQGEAGVIIPPDGYLKAVRDLCSKYN  162 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~-----~~~~~~vi-~~~~~~~~g~~~~~~~~l~~l~~l~~~~~  162 (374)
                      .             +..++.    .|+++|++++++.     ++++++++ +.+++|++|.+. +.+++++|.++|++||
T Consensus       156 ~-------------~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~v~~~~~~~nptG~~~-~~~~l~~l~~~~~~~~  221 (425)
T 1vp4_A          156 N-------------FVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYD  221 (425)
T ss_dssp             E-------------EEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTT
T ss_pred             E-------------EEEeccCCCCCCHHHHHHHHHhhhhcccCCCceEEEECCCCCCCCCCcC-CHHHHHHHHHHHHHcC
Confidence            1             111111    2799999998751     13688874 566788888776 7899999999999999


Q ss_pred             CEEEEeccccCCcccccC-cccccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          163 ILMIADEIQSGLARSGRM-LASDWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       163 i~li~Dea~~~~~~~g~~-~~~~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      ++||+||+|+++.+.|.. .....+   +....+.|+||.+++|+ |+||+++++++.+.+.......+++.+++++.++
T Consensus       222 ~~li~De~~~~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~  300 (425)
T 1vp4_A          222 LFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLA  300 (425)
T ss_dssp             CEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             CEEEEECCCccccCCCCCCcCHHHhCCCCCEEEEecccccccccc-ceEEEeeCHHHHHHHHHHhhhhcCCCCHHHHHHH
Confidence            999999999987665542 122111   11122458999999898 9999999999888876544444567799999999


Q ss_pred             HHHHHHHh--h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          239 IASLDVIR--D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       239 ~~al~~~~--~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      .++++...  +  +...++++++.+++.+.|++.....+++....+..+.++|+.++...   +..++++.|.++||.+.
T Consensus       301 ~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~gi~v~  377 (425)
T 1vp4_A          301 ARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF---DTWEMFEYAKRKKVFYV  377 (425)
T ss_dssp             HHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC---CTTTTHHHHHHHTEECE
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCceEEecCCccEEEEEEcCCCC---CHHHHHHHHHHCCCEEE
Confidence            98887631  1  23455556666667666665421100122112345778888886432   45689999999999998


Q ss_pred             cC--------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          315 PT--------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       315 ~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++        ..+++||+++.. +++++++++++|+++++ ++
T Consensus       378 ~g~~f~~~~~~~~~iRis~~~~-~~e~i~~~l~~l~~~l~-~~  418 (425)
T 1vp4_A          378 PGRVFKVYDEPSPSMRLSFCLP-PDEKIVEGIKRLREVVL-EY  418 (425)
T ss_dssp             EGGGGCTTCCCCSEEEEECSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred             CchhhcCCCCCCCeEEEEeCCC-CHHHHHHHHHHHHHHHH-HH
Confidence            74        257999998764 89999999999999987 54

>2dou_A Probable N-succinyldiaminopimelate aminotransfera; PLP-dependent enzyme, structural genomics, NPPSFA; HET: EPE; 2.30A {Thermus thermophilus}

Probab=99.97  E-value=4.5e-31  Score=246.72  Aligned_cols=289  Identities=16%  Similarity=0.180  Sum_probs=204.6

Q ss_pred             cHHHHHHHHhccc----CC----C-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           22 KFPVFAERLTSMF----GY----D-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~~----~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ...++++.+++++    |.    + ++++++|++++++.+++++     .++|     |+|++..|+||+....+...+.
T Consensus        64 ~~~~l~~~ia~~~~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~~~~g~  133 (376)
T 2dou_A           64 CTLPFLEEAARWYEGRYGVGLDPRREALALIGSQEGLAHLLLAL-----TEPE-----DLLLLPEVAYPSYFGAARVASL  133 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCCTTTSEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCCccEEEcCCcHHHHHHHHHHh-----cCCC-----CEEEECCCCcHhHHHHHHHcCC
Confidence            4566777777765    65    4 8999999999999999988     4567     9999999999987765544332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .....    +...+..    .|+++++++++   ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|+
T Consensus       134 ~~~~~----~~~~~~~----~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~  201 (376)
T 2dou_A          134 RTFLI----PLREDGL----ADLKAVPEGVW---REAKVLLLNYPNNPTGAVA-DWGYFEEALGLARKHGLWLIHDNPYV  201 (376)
T ss_dssp             EEEEE----CBCTTSS----BCGGGSCHHHH---HHEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTG
T ss_pred             EEEEe----eCCCCCC----CCHHHHHHhhc---cCceEEEECCCCCCcCccC-CHHHHHHHHHHHHHcCCEEEEEccch
Confidence            21111    1101110    26788888886   4688999988888888776 78999999999999999999999999


Q ss_pred             CCcccccCcc-cccC---CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLA-SDWE---EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~-~~~~---~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++.+.+.... ....   +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.++++++++.++++...+
T Consensus       202 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  280 (376)
T 2dou_A          202 DQVYEGEAPSPLALPGAKERVVELFSLSKSYNLAGF-RLGFALGSEEALARLERVKGVIDFNQYAGVLRMGVEALKTPKE  280 (376)
T ss_dssp             GGBSSSCCCCGGGSTTGGGTEEEEEEHHHHHTCGGG-CCEEEEECHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHTSCHH
T ss_pred             hcccCCCCCChhhcCCCCCcEEEEecchhhcCChhh-eeEEEecCHHHHHHHHHHHHhcccCCCHHHHHHHHHHHhCcHH
Confidence            8765543211 2221   22233458999998 798 9999999999988877544445567789999888888864211


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------C
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------D  318 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~  318 (374)
                        ++..++++++.+++.+.|++.   +    ... ...+.++|+.++...   +..++.+.|.++||.+.++.      .
T Consensus       281 ~~~~~~~~~~~~~~~l~~~L~~~---~----~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~g~~f~~~~~  350 (376)
T 2dou_A          281 VVRGYARVYRERALGMAEALKGV---L----SLLPPRATMYLWGRLPEGV---DDLEFGLRLVERGVALAPGRGFGPGGK  350 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTT---S----EECCCCBSSEEEEECCTTC---CHHHHHHHHHHTTEECEEGGGGCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHh---c----CccCCCeeEEEEEECCCCC---CHHHHHHHHHHCCEEEcCchhhCCCCC
Confidence              123334444444444444332   1    111 223567888886543   56789999999999998752      5


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      +++||+++  .+++++++++++|++++
T Consensus       351 ~~~Ris~~--~~~~~i~~~l~~l~~~l  375 (376)
T 2dou_A          351 GFVRIALV--RPLEELLEAAKRIREAL  375 (376)
T ss_dssp             TEEEEECC--SCHHHHHHHHHHHHHTC
T ss_pred             CeEEEEec--CCHHHHHHHHHHHHHHh
Confidence            89999966  38899999999998764

>1v2d_A Glutamine aminotransferase; PLP, riken structural genomics/proteomics initi RSGI, structural genomics; HET: PLP; 1.90A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1v2e_A* 1v2f_A*

Probab=99.97  E-value=3e-30  Score=241.56  Aligned_cols=285  Identities=19%  Similarity=0.181  Sum_probs=209.3

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ....++++.++++++.  +++++++||++|++.+++.+     ..+|     |+|++.+|+||+....+...+..     
T Consensus        61 ~~~~~l~~~la~~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~-----  125 (381)
T 1v2d_A           61 AGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL-----VGPG-----DEVVVLEPFFDVYLPDAFLAGAK-----  125 (381)
T ss_dssp             TCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE-----
T ss_pred             CCCHHHHHHHHHhcCCChhhEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE-----
Confidence            3578899999998865  48999999999999999988     4567     99999999999876544332211     


Q ss_pred             cCCCCCCCceeccC--------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           99 GFGPLLPGHLKVDF--------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        99 ~~~~~~~~~~~~~~--------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                              +..++.        .|+++++++++   ++++++++++++|++|.+. +.+.+++|.++|++||+++|+||+
T Consensus       126 --------~~~v~~~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~  193 (381)
T 1v2d_A          126 --------ARLVRLDLTPEGFRLDLSALEKALT---PRTRALLLNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEV  193 (381)
T ss_dssp             --------EEEEECEEETTEEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECT
T ss_pred             --------EEEEeCCCCCccCCcCHHHHHHhcC---cCCEEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCEEEEEcC
Confidence                    111111        27899988875   5789999999999999876 689999999999999999999999


Q ss_pred             ccCCcccccC-cccc--cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          171 QSGLARSGRM-LASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       171 ~~~~~~~g~~-~~~~--~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      |+++.+ |.. ....  ..+..+.+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++...
T Consensus       194 ~~~~~~-g~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  271 (381)
T 1v2d_A          194 YDELYY-GERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLAR  271 (381)
T ss_dssp             TTTCBS-SSCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHH
T ss_pred             cccccc-CCCCCCHHHhcCCCEEEEeechhhcCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCcHHHHHHHHHHhCcc
Confidence            998754 321 1111  2344455669999998 688 999999998888877654344467788999999998888652


Q ss_pred             --h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC------
Q 017259          247 --D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT------  316 (374)
Q Consensus       247 --~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~------  316 (374)
                        +  ++..++++++.+++.+.|++.     ++.......+.++|+.++..    +   +.+.|.++||.+.++      
T Consensus       272 ~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~----~---~~~~l~~~gi~v~~g~~~~~~  339 (381)
T 1v2d_A          272 REGFYEALREGYRRRRDLLAGGLRAM-----GLRVYVPEGTYFLMAELPGW----D---AFRLVEEARVALIPASAFYLE  339 (381)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHT-----TCCEECCSBSSEEEEECTTC----C---HHHHHHHTCEECEEGGGGCSS
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHC-----CCEecCCCcceEEEEecChH----h---HHHHHHhCCEEEecchHhCCC
Confidence              2  245566666666776666653     22211222356777777542    2   667778899999874      


Q ss_pred             --CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          317 --HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       317 --~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                        ..+++||+++.  +++++++++++|+++++ +.
T Consensus       340 ~~~~~~iRi~~~~--~~~~i~~~~~~l~~~l~-~~  371 (381)
T 1v2d_A          340 DPPKDLFRFAFCK--TEEELHLALERLGRVVN-SP  371 (381)
T ss_dssp             SCCTTEEEEECCS--CHHHHHHHHHHHHHHC----
T ss_pred             CCCCCEEEEEeCC--CHHHHHHHHHHHHHHHh-hc
Confidence              25799999765  89999999999999987 54

>2o1b_A Aminotransferase, class I; aminotrasferase; HET: PLP; 1.95A {Staphylococcus aureus}

Probab=99.97  E-value=9.4e-31  Score=246.96  Aligned_cols=293  Identities=13%  Similarity=0.133  Sum_probs=208.1

Q ss_pred             cHHHHHHHHhccc----CC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           22 KFPVFAERLTSMF----GY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ...++++.+++++    |.     +++++++|+++|++.+++++     ..+|     |+|++..|+|++....+...+.
T Consensus        86 g~~~lr~~ia~~~~~~~g~~~~~~~~v~~t~G~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~g~  155 (404)
T 2o1b_A           86 GKEAFKQAIVDFYQRQYNVTLDKEDEVCILYGTKNGLVAVPTCV-----INPG-----DYVLLPDPGYTDYLAGVLLADG  155 (404)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCSSHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCcccEEEcCCcHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHCCC
Confidence            4556666666654    63     58999999999999999988     5567     9999999999998766544332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..... ...+  .+..    .|+++|+++++   ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|+
T Consensus       156 ~~~~v-~~~~--~~~~----~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~  224 (404)
T 2o1b_A          156 KPVPL-NLEP--PHYL----PDWSKVDSQII---DKTKLIYLTYPNNPTGSTA-TKEVFDEAIAKFKGTDTKIVHDFAYG  224 (404)
T ss_dssp             EEEEE-ECCT--TTCC----CCGGGSCHHHH---HHEEEEEECSSCTTTCCCC-CHHHHHHHHHHHTTSSCEEEEECTTT
T ss_pred             EEEEe-ccCc--ccCc----CCHHHHHHhhc---cCceEEEEcCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEEEccch
Confidence            21111 1100  0100    26888888886   4688999888888888776 78999999999999999999999999


Q ss_pred             CCcccccCcccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++.+.|........    +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++....
T Consensus       225 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  303 (404)
T 2o1b_A          225 AFGFDAKNPSILASENGKDVAIEIYSLSKGYNMSGF-RVGFAVGNKDMIQALKKYQTHTNAGMFGALQDAAIYALNHYDD  303 (404)
T ss_dssp             TCBSSSCCCCGGGSTTHHHHEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHH
T ss_pred             hcccCCCCCChhhcCCCCCCEEEEEecchhccCchh-heEeEecCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhcCHH
Confidence            87654432222111    11223559999998 798 9999999999888877544445678899999999888875311


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC------C
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH------D  318 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~------~  318 (374)
                        ++..++++++.+++.+.|++.     ++.......+.++|+.++...   +..++++.|+ ++||.+.++.      .
T Consensus       304 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~f~~~~~  375 (404)
T 2o1b_A          304 FLEEQSNVFKTRRDRFEAMLAKA-----DLPFVHAKGGIYVWLETPPGY---DSEQFEQFLVQEKSILVAPGKPFGENGN  375 (404)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-----TCCEECCCBSSEEEEECCTTC---CHHHHHHHHHHHHCEECEESGGGCGGGT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhc-----CCeecCCCcceEEEEeCCCCC---CHHHHHHHHHHHCCEEEeCchhhCcCCC
Confidence              234455555666666666553     221111223556788876433   5778999988 5799998752      5


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++||+++.  +++++++++++|+++++
T Consensus       376 ~~iRis~~~--~~e~l~~~l~~l~~~l~  401 (404)
T 2o1b_A          376 RYVRISLAL--DDQKLDEAAIRLTELAY  401 (404)
T ss_dssp             TEEEEECCS--CTTHHHHHHHHHHGGGG
T ss_pred             CeEEEEEcC--CHHHHHHHHHHHHHHHH
Confidence            799999774  78899999999998887

>3fvs_A Kynurenine--oxoglutarate transaminase 1; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: LLP; 1.50A {Homo sapiens} SCOP: c.67.1.1 PDB: 3fvu_A* 3fvx_A* 1w7l_A* 1w7m_A* 1w7n_A*

Probab=99.97  E-value=2.3e-30  Score=245.51  Aligned_cols=307  Identities=15%  Similarity=0.151  Sum_probs=207.8

Q ss_pred             CcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ++++.+++.+.+.+|.     +++++|+|+++|++.+++.+     ..+|     |+|++..|+|+++.......+....
T Consensus        71 ~lr~~la~~~~~~~g~~~~~~~~i~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~~  140 (422)
T 3fvs_A           71 PLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-----VDEG-----DEVIIIEPFFDCYEPMTMMAGGRPV  140 (422)
T ss_dssp             HHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHhhCCCCCCCCcEEEECChHHHHHHHHHHH-----cCCC-----CEEEEcCCCchhhHHHHHHcCCEEE
Confidence            3344455555544332     58999999999999999988     5667     9999999999987665544433221


Q ss_pred             ccccCCCCC-CCc---eeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLL-PGH---LKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~-~~~---~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ... ..+.. .+.   ....+ .|+++++++++   ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+
T Consensus       141 ~~~-~~~~~~~~G~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~  215 (422)
T 3fvs_A          141 FVS-LKPGPIQNGELGSSSNWQLDPMELAGKFT---SRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCITDEV  215 (422)
T ss_dssp             EEE-CBCCCCCSSSCCBGGGSBCCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             EEe-cccccccccccccccCCCCCHHHHHhhcC---CCceEEEECCCCCCCCcCC-CHHHHHHHHHHHHHcCcEEEEEcc
Confidence            111 10000 000   00001 27888888876   5789999999999999887 799999999999999999999999


Q ss_pred             ccCCcccccC-cccccCC----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRM-LASDWEE----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       171 ~~~~~~~g~~-~~~~~~~----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |+++.+.|.. .......    ....+.|+||.++ +|+ |+||+++++++++.+.......+++.+++++.++.++++.
T Consensus       216 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~  294 (422)
T 3fvs_A          216 YQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAESFER  294 (422)
T ss_dssp             TTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHHTCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHHH
T ss_pred             chhhccCCCCCCChhhcccccCcEEEEecchhccCCccc-eEEEEEeCHHHHHHHHHHHhhccCCCCcHHHHHHHHHHhh
Confidence            9988666642 1222221    1233458999998 799 9999999999888887655566788899999999988875


Q ss_pred             H-----hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc----------hhHHHHHHHHHH-
Q 017259          245 I-----RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP----------VSAYDICLKMKE-  308 (374)
Q Consensus       245 ~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~----------~~~~~~~~~l~~-  308 (374)
                      .     ..+++.++.++..+..++.+.+....+ ++....+..+.++|+.++.....          ....++++.|++ 
T Consensus       295 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  373 (422)
T 3fvs_A          295 EQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPIIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWMIKN  373 (422)
T ss_dssp             HHHTTTCTTCHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHHHHH
T ss_pred             ccccccchHHHHHHHHHHHHHHHHHHHHHHHHc-CCeecCCCeeeEEEEechhhcccccccccccccccHHHHHHHHHHh
Confidence            1     112334444444444444443333332 23323345577778776431000          005578888665 


Q ss_pred             CCeEeccC-----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          309 RGILAKPT-----------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~Gi~v~~~-----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||.+.++           ..+++||++.  .+++++++++++|+++++
T Consensus       374 ~gv~v~~g~~f~~~~~~~~~~~~iRis~~--~~~e~i~~~l~~l~~~l~  420 (422)
T 3fvs_A          374 KGLVAIPVSIFYSVPHQKHFDHYIRFCFV--KDEATLQAMDEKLRKWKV  420 (422)
T ss_dssp             HCEECEEGGGGSCHHHHTTSCSEEEEECC--CCHHHHHHHHHHHHHHHH
T ss_pred             cCEEEeCcHHhcCCcCCCCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            69999873           2589999954  599999999999999987

>3kki_A CAI-1 autoinducer synthase; quorum sensing, CQSA, P virulence, acyltransferase, aminotransferase, pyridoxal PHO transferase; HET: PLP; 1.80A {Vibrio cholerae} PDB: 3hqt_A* 2wk9_A* 2wk8_A* 2wka_A* 2wk7_A

Probab=99.97  E-value=2.4e-30  Score=244.48  Aligned_cols=304  Identities=14%  Similarity=0.141  Sum_probs=226.8

Q ss_pred             hHHHHHHHhccc---cC--cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL---SS--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~---~~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++.+...   .+  ..+..+..++++++++++++.+..++++||++|+..+++++     .++|     |.|++.
T Consensus        80 ~a~~~~l~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~l~~~-----~~~g-----d~Vl~~  149 (409)
T 3kki_A           80 ARLAKSLLEEQQSLFMSASFLQNDYDKPMIEKRLAKFTGFDECLLSQSGWNANVGLLQTI-----CQPN-----TNVYID  149 (409)
T ss_dssp             HHHHHHHHSCCCCCCSBGGGGCSTTTSCHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEE
T ss_pred             HHHHHHHHHcCCCCCccccccCCcHHHHHHHHHHHHHhCCCeEEEecchHHHHHHHHHHh-----cCCC-----CEEEEC
Confidence            566667765321   11  12445778899999999999998889999999999999987     5677     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      +++|........ ..+            ..+..++..|+++|+++++++  +++++++++++|++|.+.+    +++|.+
T Consensus       150 ~~~~~~~~~~~~-~~g------------~~~~~~~~~d~~~le~~l~~~--~~~~vi~~~~~nptG~~~~----l~~l~~  210 (409)
T 3kki_A          150 FFAHMSLWEGAR-YAN------------AQAHPFMHNNCDHLRMLIQRH--GPGIIVVDSIYSTLGTIAP----LAELVN  210 (409)
T ss_dssp             TTSCHHHHHHHH-HTT------------CEEEEECTTCHHHHHHHHHHH--CSCEEEEESBCTTTCCBCC----HHHHHH
T ss_pred             CCcCHHHHHHHH-HcC------------CeEEEecCCCHHHHHHHHHhc--CCeEEEECCCCCCCCCcCC----HHHHHH
Confidence            998755433322 221            123334446899999999864  4689999999999999988    999999


Q ss_pred             HHHhcCCEEEEeccccC--CcccccCcccccCCC--CCcE--EEecccccCCccchhhheeCHHHHhhcCCCCCC--CCC
Q 017259          157 LCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDM--VILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--STF  228 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~--~~d~--~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--~~~  228 (374)
                      +|++||++||+||+|++  +++.|..+. ...+.  .+|+  .|+||++++|   +|++++++++.+.+......  .+.
T Consensus       211 la~~~~~~li~De~~~~g~~g~~g~~~~-~~~~~~~~~di~~~s~sK~~~~~---gg~v~~~~~~~~~~~~~~~~~~~~~  286 (409)
T 3kki_A          211 ISKEFGCALLVDESHSLGTHGPNGAGLL-AELGLTREVHFMTASLAKTFAYR---AGAIWCNNEVNRCVPFISYPAIFSS  286 (409)
T ss_dssp             HHHHHTCEEEEECTTTTTTSSGGGCCHH-HHHTCGGGCSEEEEESSSTTCSS---CEEEEESSSGGGTHHHHCHHHHHSB
T ss_pred             HHHHcCCEEEEECCccccccCCCCCcch-hhcCCCCCCCEEEeecchhhCCC---ceEEEECHHHHHHHHHhCcCccccC
Confidence            99999999999999996  666665433 22333  4565  5899999855   47888888887776542221  223


Q ss_pred             CCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ..+++.++++.++++.+... ++.++++++.+++.+.|+++.  +   .  ..+.+.++++.++...   +..++.+.|.
T Consensus       287 ~~~~~~~aa~~aal~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~---~--~~~~~~~~~~~~~~~~---~~~~~~~~L~  356 (409)
T 3kki_A          287 TLLPYEAAGLETTLEIIESADNRRQHLDRMARKLRIGLSQLG--L---T--IRSESQIIGLETGDER---NTEKVRDYLE  356 (409)
T ss_dssp             CCCHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTT--C---C--CCCSSSEEEEEEESHH---HHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHcC--C---c--cCCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence            46778888899999887553 667788888888888887652  1   1  1146778888776532   5678999999


Q ss_pred             HCCeEecc-------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 ERGILAKP-------THDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 ~~Gi~v~~-------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++||.+.+       .+.+++||+++..++++++++++++|+++++ ..
T Consensus       357 ~~Gv~v~~~~~~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~l~-~~  404 (409)
T 3kki_A          357 SNGVFGSVFCRPATSKNKNIIRLSLNSDVNDEQIAKIIEVCSDAVN-YG  404 (409)
T ss_dssp             HTTEECEEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HS
T ss_pred             HCCceEeeeCCCCcCCCCcEEEEEccCCCCHHHHHHHHHHHHHHHh-cC
Confidence            99999954       2358999999989999999999999999998 53

>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate; HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3 PDB: 1c7o_A*

Probab=99.97  E-value=4e-30  Score=242.09  Aligned_cols=298  Identities=14%  Similarity=0.109  Sum_probs=205.4

Q ss_pred             HHHHHHHHhcc----cC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           23 FPVFAERLTSM----FG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        23 ~~~l~~~l~~~----~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.++++    +|    .+++++|+|+++|++.+++++     ..+|     |+|++..|+||+....+...+...
T Consensus        68 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~a~~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~  137 (399)
T 1c7n_A           68 TEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-----TKPG-----DGVIIITPVYYPFFMAIKNQERKI  137 (399)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSSCCTHHHHHHHTTTCEE
T ss_pred             cHHHHHHHHHHHHHHhCCCCChhhEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCcHhHHHHHHHcCCEE
Confidence            45555555554    34    568999999999999999988     4567     999999999999776554433211


Q ss_pred             cccccCCCCC-CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLL-PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~-~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ..    .+.. .+.. .. .|+++|++++++  ++++++++++++|++|.+. +++++++|.++|++||++||+||+|++
T Consensus       138 ~~----~~~~~~~g~-~~-~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~  208 (399)
T 1c7n_A          138 IE----CELLEKDGY-YT-IDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDIVLKSDLMLWSDEIHFD  208 (399)
T ss_dssp             EE----CCCEEETTE-EE-CCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHHHHHSSCEEEEECTTTT
T ss_pred             Ee----cccccCCCC-EE-EcHHHHHHHhcc--CCCcEEEEcCCCCCCCcCc-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            11    1110 0000 00 379999999873  3688888888888899776 799999999999999999999999998


Q ss_pred             CcccccC-cccccC-----CCCCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHH
Q 017259          174 LARSGRM-LASDWE-----EVRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTF-GGNPLASAVAIASLDV  244 (374)
Q Consensus       174 ~~~~g~~-~~~~~~-----~~~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~  244 (374)
                      +.+.|.. .....+     +....+.|+||.++ +|+ |+||++++ +++.+.+.......++ +.+++++.++.++++.
T Consensus       209 ~~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~~l~~  287 (399)
T 1c7n_A          209 LIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGM-GMSNIIIKNPDIRERFTKSRDATSGMPFTTLGYKACEICYKE  287 (399)
T ss_dssp             CBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCCCCCHHHHHHHHHHHHH
T ss_pred             cccCCCCcccHHHcCccccCcEEEEEeChhhccccch-heEEEEECCHHHHHHHHHHHhhcccCCCCHHHHHHHHHHHhC
Confidence            8665532 222211     11223458899998 798 99999986 5687777654333333 5689999988888875


Q ss_pred             Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEe-eeEEEEeccC-CCchhHHHHHHHHH-HCCeEeccC---
Q 017259          245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRG-LFNAVEFDKT-ALPVSAYDICLKMK-ERGILAKPT---  316 (374)
Q Consensus       245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g-~~~~~~~~~~-~~~~~~~~~~~~l~-~~Gi~v~~~---  316 (374)
                      ..+  +...++++++.+++.+.|++.   +|++ ....+.+ .+.|+.++.. .   +..++.+.|+ ++||.+.++   
T Consensus       288 ~~~~~~~~~~~~~~~~~~l~~~L~~~---~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~  360 (399)
T 1c7n_A          288 CGKWLDGCIKVIDKNQRIVKDFFEVN---HPEI-KAPLIEGTYLQWIDFRALKM---DHKAMEEFMIHKAQIFFDEGYIF  360 (399)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHH---CTTS-BCCCCSBSSEEEEECGGGCC---CHHHHHHHHHHTTCCCCEEGGGG
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHhh---CCCC-eEecCCceEEEEEEcccCCC---CHHHHHHHHHHhCCEEEeCcccc
Confidence            311  133444555555555555442   3332 2223344 4456777642 2   5778999998 689999875   


Q ss_pred             ---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          317 ---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       317 ---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                         ..+++||+++.  .++++++++++|+++++ ++.
T Consensus       361 ~~~~~~~iRis~~~--~~~~l~~~l~~l~~~l~-~~~  394 (399)
T 1c7n_A          361 GDGGIGFERINLAA--PSSVIQESLERLNKALK-DLK  394 (399)
T ss_dssp             CGGGTTEEEEECCS--CHHHHHHHHHHHHHHHH-HHC
T ss_pred             CCCCCCeEEEEecc--CHHHHHHHHHHHHHHHH-HHH
Confidence               25799999764  48899999999999998 653

>3h14_A Aminotransferase, classes I and II; YP_167802.1, SPO258 structural genomics, PSI-2, protein structure initiative; HET: MSE; 1.90A {Silicibacter pomeroyi dss-3}

Probab=99.97  E-value=1.8e-30  Score=243.85  Aligned_cols=286  Identities=11%  Similarity=0.152  Sum_probs=204.7

Q ss_pred             HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++        ..+++++|+||++|++.+++.+     .++|     |+|++..|+|++....+...+.. 
T Consensus        70 ~~~lr~~ia~~~~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~-  138 (391)
T 3h14_A           70 LPALRQRIARLYGEWYGVDLDPGRVVITPGSSGGFLLAFTAL-----FDSG-----DRVGIGAPGYPSYRQILRALGLV-  138 (391)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHTTCE-
T ss_pred             hHHHHHHHHHHHHHHhCCCCCHHHEEEecChHHHHHHHHHHh-----cCCC-----CEEEEcCCCCccHHHHHHHcCCE-
Confidence            445555555543        4568999999999999999988     5677     99999999998876555443322 


Q ss_pred             cccccCCCCCCCceeccCC-------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           95 EAIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                                  +..++++       |+++++++      +++++++++++|++|.+. +.+.+++|.++|++||+++|+
T Consensus       139 ------------~~~v~~~~~~~~~~d~~~l~~~------~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~  199 (391)
T 3h14_A          139 ------------PVDLPTAPENRLQPVPADFAGL------DLAGLMVASPANPTGTML-DHAAMGALIEAAQAQGASFIS  199 (391)
T ss_dssp             ------------EEEEECCGGGTTSCCHHHHTTS------CCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEE
T ss_pred             ------------EEEeecCcccCCCCCHHHHHhc------CCeEEEECCCCCCCCccC-CHHHHHHHHHHHHHcCCEEEE
Confidence                        1222221       67776654      577888888889999877 788999999999999999999


Q ss_pred             eccccCCcccccCcccccC-CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          168 DEIQSGLARSGRMLASDWE-EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~-~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ||+|+++.+.+........ +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++..
T Consensus       200 De~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  278 (391)
T 3h14_A          200 DEIYHGIEYEAKAVTALELTDECYVINSFSKYFSMTGW-RVGWMVVPEDQVRVVERIAQNMFICAPHASQVAALAALDCD  278 (391)
T ss_dssp             ECTTTTCBSSSCCCCGGGTCSSSEEEEESSSTTCCTTS-CCEEEECCGGGHHHHHHHHHHTTCCCCHHHHHHHHHHTTCH
T ss_pred             ECcchhcccCCCCcChhhcCCCEEEEEechhccCCccc-eeEEEEeCHHHHHHHHHHHhhhccCCCHHHHHHHHHHhCCh
Confidence            9999988666543222222 21222348999998 899 99999999988888876555667788999999888887611


Q ss_pred             hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEecc-CCCchhHHHHHHHHHHC-CeEeccC-----
Q 017259          246 RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDK-TALPVSAYDICLKMKER-GILAKPT-----  316 (374)
Q Consensus       246 ~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~-~~~~~~~~~~~~~l~~~-Gi~v~~~-----  316 (374)
                      .. ++..++++++.+++.+.|++.     +......+. +.++|+.++. ..   +..++++.|+++ ||.++++     
T Consensus       279 ~~~~~~~~~~~~~~~~l~~~l~~~-----~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~  350 (391)
T 3h14_A          279 AELQANLDVYKANRKLMLERLPKA-----GFTRIAPPDGAFYVYADVSDLTD---DSRAFAAEILEKAGVAVTPGLDFDP  350 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-----TCCCBCCCCBTTEEEEECTTTCS---CHHHHHHHHHHHHCEECEEGGGTCT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHc-----CCCcccCCCeeEEEEEecCccCC---CHHHHHHHHHHHCCEEEcCchhhCC
Confidence            00 134555556666666666554     222222233 4667777754 22   678899998876 9999874     


Q ss_pred             --CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          317 --HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       317 --~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                        ..+++||+++.  +++++++++++|+++++ +..
T Consensus       351 ~~~~~~iRis~~~--~~~~i~~~l~~l~~~~~-~~~  383 (391)
T 3h14_A          351 ERGAGTLRFSYAR--ATADIEEGLDRLEAFMQ-ARG  383 (391)
T ss_dssp             TTGGGEEEEECCS--CHHHHHHHHHHHHHHHH-HC-
T ss_pred             CCCCCeEEEEecC--CHHHHHHHHHHHHHHHH-Hhc
Confidence              25799999664  88999999999999998 553

>1j32_A Aspartate aminotransferase; HET: PLP; 2.10A {Phormidium lapideum} SCOP: c.67.1.1

Probab=99.97  E-value=2.6e-30  Score=242.47  Aligned_cols=293  Identities=14%  Similarity=0.143  Sum_probs=204.4

Q ss_pred             HHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           23 FPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        23 ~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .+.+++.+.+.+|    .+++++|+|+++|++.+++.+     ..+|     |+|++.+|+|++....+...+...... 
T Consensus        73 ~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~~v-  141 (388)
T 1j32_A           73 REAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-----IEPG-----DEVIIPAPFWVSYPEMVKLAEGTPVIL-  141 (388)
T ss_dssp             HHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHHHTTCEEEEE-
T ss_pred             HHHHHHHHHHhcCCCCChhhEEEcCCHHHHHHHHHHHh-----cCCC-----CEEEEcCCCChhHHHHHHHcCCEEEEe-
Confidence            3344444443323    468999999999999999988     4567     999999999988765444332211110 


Q ss_pred             cCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           99 GFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        99 ~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                         +...+   -.+ .|+++|+++++   ++++++++++++|++|.+. +++.+++|.++|++||+++|+||+|+++.+.
T Consensus       142 ---~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~~~  211 (388)
T 1j32_A          142 ---PTTVE---TQFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVY-TPDEVRAIAQVAVEAGLWVLSDEIYEKILYD  211 (388)
T ss_dssp             ---CCCGG---GTTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTCBCT
T ss_pred             ---cCCcc---cCCCCCHHHHHHhcC---cCceEEEEeCCCCCCCcCC-CHHHHHHHHHHHHHcCCEEEEEccchhcccC
Confidence               11000   011 27899998886   4789999888888899876 7899999999999999999999999987665


Q ss_pred             ccCc-cccc-----CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--h
Q 017259          178 GRML-ASDW-----EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--E  248 (374)
Q Consensus       178 g~~~-~~~~-----~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~  248 (374)
                      +..+ ....     .+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++...+  +
T Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~  290 (388)
T 1j32_A          212 DAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW-RVGFLAGPVPLVKAATKIQGHSTSNVCTFAQYGAIAAYENSQDCVQ  290 (388)
T ss_dssp             TCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHSCSHHHH
T ss_pred             CCCCCCHHHccccccCCEEEEeechhccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhCCcHHHH
Confidence            5321 1111     223344669999998 788 9999999999888876554556778899999888888863211  2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHH-CCeEeccCC----CCEEE
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKE-RGILAKPTH----DTIVR  322 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~-~Gi~v~~~~----~~~lR  322 (374)
                      +..++++++.+++.+.|+++    |++.......+.++|+.++. ..   +..++.+.|.+ +||.+.++.    .+++|
T Consensus       291 ~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~~gi~v~~g~~~~~~~~iR  363 (388)
T 1j32_A          291 EMLAAFAERRRYMLDALNAM----PGLECPKPDGAFYMFPSIAKTGR---SSLDFCSELLDQHQVATVPGAAFGADDCIR  363 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC----TTCBCCCCCBTTEECCBCGGGTC---CHHHHHHHHHHHHCEECEEGGGGTCTTBEE
T ss_pred             HHHHHHHHHHHHHHHHHhhC----CCCcccCCCeeEEEEEecCCCCC---CHHHHHHHHHHhCCEEEeChhhhCCCCcEE
Confidence            34455555566665555442    22221112234455555543 22   57889999986 699998753    58999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++  .+++++++++++|+++++
T Consensus       364 is~~--~~~~~i~~~~~~l~~~l~  385 (388)
T 1j32_A          364 LSYA--TDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             EECC--SCHHHHHHHHHHHHHHHH
T ss_pred             EEec--CCHHHHHHHHHHHHHHHH
Confidence            9965  689999999999999887

>3ftb_A Histidinol-phosphate aminotransferase; structural genomics, PSI, MCSG, protein structure initiative; 2.00A {Clostridium acetobutylicum} SCOP: c.67.1.0

Probab=99.97  E-value=2.4e-29  Score=233.49  Aligned_cols=300  Identities=14%  Similarity=0.115  Sum_probs=214.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.++++....    |+.+...+++++++++++  .+++++|+|+++|++.+++++              |+|++..|+
T Consensus        46 ~a~~~~~~~~~~----y~~~~~~~l~~~la~~~~~~~~~i~~~~g~t~al~~~~~~~--------------d~vi~~~~~  107 (361)
T 3ftb_A           46 NNIDEGIKNLGV----YPDVNYRRLNKSIENYLKLKDIGIVLGNGASEIIELSISLF--------------EKILIIVPS  107 (361)
T ss_dssp             TTHHHHHHGGGS----CCCTTCHHHHHHHHHHHTCCSCEEEEESSHHHHHHHHHTTC--------------SEEEEEESC
T ss_pred             HHHHHHHHHhcC----CCCccHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHc--------------CcEEEecCC
Confidence            455666655332    345667899999999886  568999999999999988765              789999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      |++....+...+......    +...+.    .-++++++++++   + ++++++++++|++|.+. +.+.+++|+++|+
T Consensus       108 ~~~~~~~~~~~g~~~~~~----~~~~~~----~~~~~~l~~~l~---~-~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~  174 (361)
T 3ftb_A          108 YAEYEINAKKHGVSVVFS----YLDENM----CIDYEDIISKID---D-VDSVIIGNPNNPNGGLI-NKEKFIHVLKLAE  174 (361)
T ss_dssp             CTHHHHHHHHTTCEEEEE----ECCTTS----CCCHHHHHHHTT---T-CSEEEEETTBTTTTBCC-CHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHcCCeEEEe----ecCccc----CCCHHHHHHhcc---C-CCEEEEeCCCCCCCCCC-CHHHHHHHHHHhh
Confidence            998766655443222111    110000    015788988887   3 77888888889999877 7888999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcE---EEeccccc-CCccchhhhe-eCHHHHhhcCCCCCCCCCCCCHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      +||+++|+||+|+++.+.+........+..+++   .|+||.++ +|+ |+||++ .++++.+.+...  ..+++.++++
T Consensus       175 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~g~~~~~~~~~~~~~~~~--~~~~~~~~~~  251 (361)
T 3ftb_A          175 EKKKTIIIDEAFIEFTGDPSSSFVGEIKNYSCLFIIRAMTKFFAMPGI-RFGYGITNNKEIAAKIKAK--QNPWNINCFA  251 (361)
T ss_dssp             HHTCEEEEECSSGGGTCCTTSSSGGGTTTCSSEEEEEESSSTTSCGGG-CCEEEEESCHHHHHHHHTT--SCTTCSCHHH
T ss_pred             hcCCEEEEECcchhhcCCcccchhHhcccCCCEEEEeeChhhcCCCCc-ceeEEEeCCHHHHHHHHhh--CCCCCCCHHH
Confidence            999999999999977553212122222233333   38899998 788 999988 888988888753  3467889999


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       235 ~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      ++++.++++.   .++.++.++.....++.+.+....+| .+. ..++.+.++++.++..    +..++.+.|.++||.+
T Consensus       252 ~~~~~~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~v  323 (361)
T 3ftb_A          252 EMAAINCLKD---TNYIEESLLWIKKERKRFIEELNKIG-FIKRVFSPHANFVLCRLENI----SGEKLYDSLLKEDIVI  323 (361)
T ss_dssp             HHHHHHTSSC---HHHHHHHHHHHHHHHHHHHHHHHHSS-SEEEEECCSSSEEEEEESSS----CHHHHHHHHHTTTEEC
T ss_pred             HHHHHHHhcC---HHHHHHHHHHHHHHHHHHHHHHHhCC-CCceecCCCCeEEEEEcCCC----CHHHHHHHHHHCCeEE
Confidence            9998888763   23334444444444444444333443 333 4556788888888763    6789999999999999


Q ss_pred             ccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 KPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++.      .+++|++++   +.++++++++.|+++.+
T Consensus       324 ~~g~~~~~~~~~~iRis~~---~~~~~~~l~~~l~~~~~  359 (361)
T 3ftb_A          324 RRCCNFIGLDDSFVRFAIK---DEKKNTKFLRALKGVEN  359 (361)
T ss_dssp             EECTTSTTCCTTEEEEECC---CHHHHHHHHHHHHHHHH
T ss_pred             eeCccCCCCCCCEEEEEcC---CHHHHHHHHHHHHHHHh
Confidence            8853      589999954   88889999999988776

>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening, ethylene biosynthesis, lyase, pyridoxal 5'-P binding; HET: LLP PLR; 1.35A {Malus domestica} SCOP: c.67.1.4 PDB: 1m4n_A* 1m7y_A* 1ynu_A* 1b8g_A*

Probab=99.97  E-value=5.1e-30  Score=244.26  Aligned_cols=297  Identities=16%  Similarity=0.113  Sum_probs=205.5

Q ss_pred             CcHHHHHHHHhcccC----------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259           21 DKFPVFAERLTSMFG----------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~   90 (374)
                      ....++++.++++++          .+++++++||++|++.+++++     .++|     |.|++.+|+|++........
T Consensus        86 ~g~~~l~~~la~~~~~~~~~~~~~~~~~v~~~~gg~~a~~~~~~~l-----~~~g-----d~vl~~~p~~~~~~~~~~~~  155 (435)
T 3piu_A           86 HGLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL-----ADPG-----EAVLIPTPYYPGFDRDLKWR  155 (435)
T ss_dssp             TCCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHTTTT
T ss_pred             CCcHHHHHHHHHHHHHhhCCCCCCCHHHEEEcCChHHHHHHHHHHh-----cCCC-----CeEEECCCccccHHHHHHHh
Confidence            345677777777664          679999999999999999988     5667     99999999998776544322


Q ss_pred             cCCccccccCCCCCCCceeccC-------CCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDF-------GDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      .+..            +..+++       .|+++|+++++++   +.+++++++++++|++|.+. +.+.+++|.++|++
T Consensus       156 ~g~~------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~l~~~~~~  222 (435)
T 3piu_A          156 TGVE------------IVPIHCTSSNGFQITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVED  222 (435)
T ss_dssp             TCCE------------EEEEECCGGGTSCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHH
T ss_pred             cCCE------------EEEeeCCCccCCcCCHHHHHHHHHHHHhcCCCeEEEEEcCCCCCCCCCC-CHHHHHHHHHHHHH
Confidence            2211            112221       1799999999852   34789999998899999877 78889999999999


Q ss_pred             cCCEEEEeccccCCcccccCccc-ccC----CCC-----Cc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCC
Q 017259          161 YNILMIADEIQSGLARSGRMLAS-DWE----EVR-----PD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEH  224 (374)
Q Consensus       161 ~~i~li~Dea~~~~~~~g~~~~~-~~~----~~~-----~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~  224 (374)
                      ||++||+||+|+++.+.+..+.. ...    +.+     ++    +.|+||+++ +|+ |+||+++ ++.+.+.+..  .
T Consensus       223 ~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~i~i~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~--~  299 (435)
T 3piu_A          223 KGIHLISDEIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK--M  299 (435)
T ss_dssp             HTCEEEEECTTGGGCCSSSCCCCHHHHHHC-------CGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHH--H
T ss_pred             cCCEEEEeccccccccCCCCCcCHHHhccccccccccCCCCCEEEEEeeecccCCCce-eEEEEEeCCHHHHHHHHH--H
Confidence            99999999999986555543221 111    111     23    458999998 898 9999988 5666666543  2


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---c
Q 017259          225 GSTFGGNPLASAVAIASLDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---P  296 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~  296 (374)
                      ...+..+++++.++.++++....     ++..++++++.+++.+.|++.     ++.......+.++|+.++....   .
T Consensus       300 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~l~~~~~~~~~  374 (435)
T 3piu_A          300 SSFGLVSSQTQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-----GISCLNGNAGLFCWVDMRHLLRSNTF  374 (435)
T ss_dssp             GGGSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-----TCEECCCCSSSEEEEECGGGSSSSSH
T ss_pred             hhcCCCCHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcccCCCeeEEEEEEcccccccCCc
Confidence            23455678888887777763221     123344444444444444432     2222222234788888864211   1


Q ss_pred             hhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          297 VSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       297 ~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ....++++.|+++ ||.+.++      ..+++||+++.. +++++++++++|+++++ ++.
T Consensus       375 ~~~~~~~~~l~~~~gi~v~~g~~~~~~~~~~iRi~~~~~-~~e~i~~~l~~l~~~l~-~~~  433 (435)
T 3piu_A          375 EAEMELWKKIVYEVHLNISPGSSCHCTEPGWFRVCFANL-PERTLDLAMQRLKAFVG-EYY  433 (435)
T ss_dssp             HHHHHHHHHHHHTSCEECEEGGGGTCSSTTEEEEECSSS-CHHHHHHHHHHHHHHHH-HHC
T ss_pred             hhHHHHHHHHHHHCCEEEeCCcccCCCCCCEEEEEeeCC-CHHHHHHHHHHHHHHHH-HHh
Confidence            1356889999887 9999873      368999997655 99999999999999998 653

>1u08_A Hypothetical aminotransferase YBDL; alpha beta protein; HET: PLP; 2.35A {Escherichia coli} SCOP: c.67.1.1

Probab=99.97  E-value=4.5e-30  Score=240.72  Aligned_cols=290  Identities=15%  Similarity=0.158  Sum_probs=202.3

Q ss_pred             HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..++++.++++    +|    .+ ++++++|+++|++.+++++     ..+|     |+|++.+|+||+....+...+..
T Consensus        69 ~~~l~~~la~~l~~~~g~~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~  138 (386)
T 1u08_A           69 VQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-----VRNG-----DEVICFDPSYDSYAPAIALSGGI  138 (386)
T ss_dssp             CHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHHhCCCCCCCCCEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEeCCCchhHHHHHHHcCCE
Confidence            45555555554    34    45 8999999999999999988     4567     99999999999876544433221


Q ss_pred             ccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ....    +...+    .+ .|+++|+++++   ++++++++++++|++|.+. +.+.+++|.++|++||++||+||+|+
T Consensus       139 ~~~v----~~~~~----~~~~d~~~l~~~l~---~~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~  206 (386)
T 1u08_A          139 VKRM----ALQPP----HFRVDWQEFAALLS---ERTRLVILNTPHNPSATVW-QQADFAALWQAIAGHEIFVISDEVYE  206 (386)
T ss_dssp             EEEE----ECCTT----TCCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHTTSCCEEEEECTTT
T ss_pred             EEEe----ecCcc----cCcCCHHHHHHhhc---ccCEEEEEeCCCCCCCccC-CHHHHHHHHHHHHHcCcEEEEEcccc
Confidence            1111    11000    01 27899998886   5789999988889999776 78899999999999999999999999


Q ss_pred             CCcccccCc-ccc----cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          173 GLARSGRML-ASD----WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       173 ~~~~~g~~~-~~~----~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      ++.+.|... ...    ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++...
T Consensus       207 ~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~  285 (386)
T 1u08_A          207 HINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-KVGYCVAPAPISAEIRKVHQYLTFSVNTPAQLALADMLRAEP  285 (386)
T ss_dssp             TCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHCT
T ss_pred             ccccCCCCCcChhcccCccCcEEEEecchhhcCCccc-ceEEEEcCHHHHHHHHHHHHhhccCCChHHHHHHHHHHhCCc
Confidence            876555321 111    1233334568999998 788 999999999988887654444567888999888888887541


Q ss_pred             h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC-------
Q 017259          247 D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT-------  316 (374)
Q Consensus       247 ~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~-------  316 (374)
                      .  ++..++++++.+++.+.|++.     ++.......+.++|+.++... ..+..++++.|. ++||.+.++       
T Consensus       286 ~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~  359 (386)
T 1u08_A          286 EHYLALPDFYRQKRDILVNALNES-----RLEILPCEGTYFLLVDYSAVS-TLDDVEFCQWLTQEHGVAAIPLSVFCADP  359 (386)
T ss_dssp             HHHHTHHHHHHHHHHHHHHHTTSS-----SCEECCCCBSSEEEEECTTTC-CSCHHHHHHHHHHHSCEECEEGGGGCSSC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHC-----CCeecCCCceEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEeCchHhCCCC
Confidence            1  134445555555555544432     222212233678888876420 015778999887 679999864       


Q ss_pred             -CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          317 -HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       317 -~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                       ..+++||+++  .+++++++++++|++
T Consensus       360 ~~~~~iRis~~--~~~~~i~~~~~~l~~  385 (386)
T 1u08_A          360 FPHKLIRLCFA--KKESTLLAAAERLRQ  385 (386)
T ss_dssp             CCSCEEEEECC--SCHHHHHHHHHHHTT
T ss_pred             CCCCEEEEEEc--CCHHHHHHHHHHHhh
Confidence             3579999965  589999999998863

>1o4s_A Aspartate aminotransferase; TM1255, structural genomics, JCS protein structure initiative, joint center for structural G transferase; HET: PLP; 1.90A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.97  E-value=2.3e-30  Score=243.10  Aligned_cols=290  Identities=15%  Similarity=0.177  Sum_probs=210.0

Q ss_pred             cHHHHHHHHhccc----C----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           22 KFPVFAERLTSMF----G----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ...++++.+++++    |    .+++++++|+++|++.+++++     ..+|     |+|++.+|+|++....+...+..
T Consensus        79 g~~~lr~~la~~~~~~~g~~~~~~~v~~~~g~t~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~  148 (389)
T 1o4s_A           79 GIYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-----LDPG-----DEVIVFSPVWVSYIPQIILAGGT  148 (389)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCHHHEEEecCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE
Confidence            4556666666654    4    358999999999999999988     4567     99999999999876554433321


Q ss_pred             ccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           94 NEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ....    +...+   -.+ .|+++|+++++   ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+
T Consensus       149 ~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~Dea~~  217 (389)
T 1o4s_A          149 VNVV----ETFMS---KNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYD  217 (389)
T ss_dssp             EEEE----ECCGG---GTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTT
T ss_pred             EEEE----ecCCc---cCCCCCHHHHHHhcc---cCceEEEEcCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEcccc
Confidence            1111    10000   011 17899988886   4688898888888899776 78999999999999999999999999


Q ss_pred             CCcccccCcccccCC--CCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEE--VRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~--~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++.+.|.......+.  ...+  +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++.. .
T Consensus       218 ~~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~-~  295 (389)
T 1o4s_A          218 SLVYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW-RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-N  295 (389)
T ss_dssp             TSBCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-C
T ss_pred             ccccCCCCCCHhhcCCCCCcEEEEeechhhcCCccc-ceEEEEeCHHHHHHHHHHhhhcccCCCHHHHHHHHHHHhcc-H
Confidence            876554322222111  1223  458999998 788 99999999998888765444456777888888888777542 3


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCC----CCEEE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTH----DTIVR  322 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~----~~~lR  322 (374)
                      +++.++++++.+++.+.|+++  .+. ..  ....+.++|+.++ .    +..++.+.|+ ++||.+.++.    ++++|
T Consensus       296 ~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~~~~~~~~~~-~----~~~~l~~~l~~~~gi~v~~g~~f~~~~~~R  365 (389)
T 1o4s_A          296 SYMVQTFKERKNFVVERLKKM--GVK-FV--EPEGAFYLFFKVR-G----DDVKFCERLLEEKKVALVPGSAFLKPGFVR  365 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHT--TCC-CC--CCSBSSEEEEECS-S----CHHHHHHHHHHHHCEECEEGGGGTCTTEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhc--CCe-ee--cCCcceEEEEeCC-C----CHHHHHHHHHHHCCEEEeCchhcCCCCeEE
Confidence            456777888888888888775  221 22  1223556677765 2    5788999998 8899998753    47999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++  .+++++++++++|+++++
T Consensus       366 is~~--~~~~~l~~~l~~l~~~l~  387 (389)
T 1o4s_A          366 LSFA--TSIERLTEALDRIEDFLN  387 (389)
T ss_dssp             EECC--SCHHHHHHHHHHHHHHHT
T ss_pred             EEEe--CCHHHHHHHHHHHHHHHh
Confidence            9976  489999999999999886

>3jtx_A Aminotransferase; NP_283882.1, structural genomics, joint CE structural genomics, JCSG, protein structure initiative; HET: LLP MES; 1.91A {Neisseria meningitidis Z2491}

Probab=99.97  E-value=2.7e-30  Score=243.03  Aligned_cols=298  Identities=14%  Similarity=0.079  Sum_probs=205.6

Q ss_pred             CCcHHHHHHHHhcccC-----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           20 NDKFPVFAERLTSMFG-----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~-----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++++.+++.+.+.+|     .+ ++++|+|++++++.+++++.     .+|.+.++|+|++..|+|++....+...+..
T Consensus        69 ~~lr~~la~~l~~~~g~~~~~~~~~i~~t~g~~~al~~~~~~~~-----~~g~~~~~d~vl~~~p~~~~~~~~~~~~g~~  143 (396)
T 3jtx_A           69 PELRQACANWLKRRYDGLTVDADNEILPVLGSREALFSFVQTVL-----NPVSDGIKPAIVSPNPFYQIYEGATLLGGGE  143 (396)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCTTTSEEEESSHHHHHHHHHHHHC-----CC---CCCCEEEEEESCCHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCCeEEEcCCcHHHHHHHHHHHh-----CCCCccCCCEEEEcCCCcHhHHHHHHHcCCE
Confidence            4455566666665544     56 99999999999999999883     3431111379999999998876655444332


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ..... ...  .+..    .|++++++++++   +++++++++++|++|.+. +.+.+++|.++|++||++||+||+|++
T Consensus       144 ~~~v~-~~~--~g~~----~d~~~l~~~~~~---~~~~v~l~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~  212 (396)
T 3jtx_A          144 IHFAN-CPA--PSFN----PDWRSISEEVWK---RTKLVFVCSPNNPSGSVL-DLDGWKEVFDLQDKYGFIIASDECYSE  212 (396)
T ss_dssp             EEEEE-CCT--TTCC----CCGGGSCHHHHH---TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEECTTTT
T ss_pred             EEEee-cCC--CCCc----cCHHHHHHhhcc---CcEEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            21111 000  0000    168888888873   788999888889999877 788899999999999999999999998


Q ss_pred             Ccccc-cCcccc--------cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          174 LARSG-RMLASD--------WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       174 ~~~~g-~~~~~~--------~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +.+.+ .+....        ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  291 (396)
T 3jtx_A          213 IYFDGNKPLGCLQAAAQLGRSRQKLLMFTSLSKRSNVPGL-RSGFVAGDAELLKNFLLYRTYHGSAMSIPVQRASIAAWD  291 (396)
T ss_dssp             CCSTTCCCCCHHHHHHHTTCCCTTEEEEEESTTTSSCGGG-CCEEEEECHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHH
T ss_pred             cccCCCCCchHHhhhhhcccccCcEEEEeccccccCCccc-ceEEEEeCHHHHHHHHHHHhhcccCCCHHHHHHHHHHhC
Confidence            86666 232221        1233344669999987 688 999999999998888765455567889999999988886


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccC------
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT------  316 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~------  316 (374)
                      .   +++.++.++.....++.+.+....+..+.  ....+.++|+.++..    +..++++.|++ +||.+.++      
T Consensus       292 ~---~~~~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~~~~~~~~~----~~~~~~~~l~~~~gi~v~~g~~~~~~  362 (396)
T 3jtx_A          292 D---EQHVIDNRRLYQEKFERVIPILQQVFDVK--LPDASFYIWLKVPDG----DDLAFARNLWQKAAIQVLPGRFLARD  362 (396)
T ss_dssp             C---CHHHHHHHHHHHHHHHHHHHHHTTTSCCC--CCSSSSEEEEECTTS----CHHHHHHHHHHHHCEECEEGGGGCCC
T ss_pred             C---HHHHHHHHHHHHHHHHHHHHHHHhcCCcc--CCCeeEEEEEECCCC----CHHHHHHHHHHHCCEEEeCChHhCCc
Confidence            3   23333333333333333333332211111  223467788888753    57889999865 69999763      


Q ss_pred             ------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          317 ------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       317 ------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                            ..+++||+++  .+++++++++++|++++
T Consensus       363 ~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l  395 (396)
T 3jtx_A          363 TEQGNPGEGYVRIALV--ADVATCVKAAEDIVSLY  395 (396)
T ss_dssp             CTTCCTTTTEEEEECC--SCHHHHHHHHHHHHHHC
T ss_pred             ccccCCCCCeEEEEEc--CCHHHHHHHHHHHHHHh
Confidence                  2589999965  49999999999998765

>2o0r_A RV0858C (N-succinyldiaminopimelate aminotransfera; PLP-binding enzyme, lysine biosynthesis, aminotransferase, S genomics; HET: LLP; 2.00A {Mycobacterium tuberculosis}

Probab=99.97  E-value=3.4e-30  Score=243.66  Aligned_cols=296  Identities=15%  Similarity=0.182  Sum_probs=205.9

Q ss_pred             HHHHHHHHhcc----cC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           23 FPVFAERLTSM----FG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        23 ~~~l~~~l~~~----~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..++++.++++    +|    .+ ++++|+|+++|++.+++++     .++|     |+|++.+|+|++....+...+..
T Consensus        64 ~~~l~~~la~~~~~~~g~~~~~~~~v~~t~g~~~al~~~~~~~-----~~~g-----d~Vl~~~~~y~~~~~~~~~~g~~  133 (411)
T 2o0r_A           64 SAPLRRAIAAQRRRHFGVDYDPETEVLVTVGATEAIAAAVLGL-----VEPG-----SEVLLIEPFYDSYSPVVAMAGAH  133 (411)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCTTTSEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred             CHHHHHHHHHHHHHHcCCCCCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCcHhHHHHHHHcCCE
Confidence            34455555544    34    45 8999999999999999988     4567     99999999999876544333221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ....    +...+..... .|+++|+++++   ++++++++++++|++|.+. +.+++++|.++|++||++||+||+|++
T Consensus       134 ~~~v----~~~~~~~~~~-~d~~~l~~~l~---~~~~~v~l~~~~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~  204 (411)
T 2o0r_A          134 RVTV----PLVPDGRGFA-LDADALRRAVT---PRTRALIINSPHNPTGAVL-SATELAAIAEIAVAANLVVITDEVYEH  204 (411)
T ss_dssp             EEEE----ECEEETTEEE-CCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             EEEe----eccccccCCC-CCHHHHHHhhc---cCceEEEEeCCCCCCCCCC-CHHHHHHHHHHHHHcCCEEEEEccccc
Confidence            1110    0000000000 37999998886   4789999998889999776 789999999999999999999999998


Q ss_pred             CcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          174 LARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       174 ~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      +.+.|.. .....+    +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.++++++++.++++...+
T Consensus       205 ~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~  283 (411)
T 2o0r_A          205 LVFDHARHLPLAGFDGMAERTITISSAAKMFNCTGW-KIGWACGPAELIAGVRAAKQYLSYVGGAPFQPAVALALDTEDA  283 (411)
T ss_dssp             CBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCTTT-CEEEEECCHHHHHHHHHHHHHHTSCCCTTHHHHHHHHHHHCHH
T ss_pred             cccCCCCCcChhhccCCCCCEEEEeechhhcCCccc-eEEEEeeCHHHHHHHHHHHhhccCCCChHHHHHHHHHHhCChH
Confidence            7665532 122211    22233558999998 788 9999999999888776543444667778888888888875321


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC--------
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT--------  316 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~--------  316 (374)
                        ++..++++++.+++.+.|++..     +.......+.++|+.++... ..+..++.+.|+ ++||.+.++        
T Consensus       284 ~~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~g~~~~~~~~~~~-~~~~~~~~~~l~~~~gi~v~~g~~f~~~~~  357 (411)
T 2o0r_A          284 WVAALRNSLRARRDRLAAGLTEIG-----FAVHDSYGTYFLCADPRPLG-YDDSTEFCAALPEKVGVAAIPMSAFCDPAA  357 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHT-----CEECCCCBSSEEEEECGGGT-CCCHHHHHHHHHHHHSEECEEGGGGSCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHcC-----CEecCCCeeEEEEEecCCCC-CCCHHHHHHHHHHhCCEEEcChhhhCCCcc
Confidence              2455666667777777776651     22112234567888886410 014678999887 579999763        


Q ss_pred             ---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ---------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ---------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                               ..+++||+++  .+++++++++++|+++++
T Consensus       358 ~~~~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~~~  394 (411)
T 2o0r_A          358 GQASQQADVWNHLVRFTFC--KRDDTLDEAIRRLSVLAE  394 (411)
T ss_dssp             -------CCGGGCEEEECC--SCHHHHHHHHHHHGGGGC
T ss_pred             ccccccccCCCCeEEEEec--CCHHHHHHHHHHHHHHHh
Confidence                     2468999965  589999999999988776

>3ele_A Amino transferase; RER070207001803, structural genomics, JOI for structural genomics, JCSG; HET: MSE PLP; 2.10A {Eubacterium rectale}

Probab=99.97  E-value=5.6e-30  Score=241.01  Aligned_cols=293  Identities=15%  Similarity=0.153  Sum_probs=206.8

Q ss_pred             CcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ++++.+++++.+.+    ..+++++|+|+++|++.+++.+.     ++|    +|+|++..|+|++....+...+.....
T Consensus        80 ~lr~~la~~l~~~~g~~~~~~~i~~~~g~~~al~~~~~~l~-----~~g----~d~vl~~~p~~~~~~~~~~~~g~~~~~  150 (398)
T 3ele_A           80 ETRAAIAEFLNNTHGTHFNADNLYMTMGAAASLSICFRALT-----SDA----YDEFITIAPYFPEYKVFVNAAGARLVE  150 (398)
T ss_dssp             HHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHHC-----CST----TCEEEEESSCCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCChHHEEEccCHHHHHHHHHHHHc-----CCC----CCEEEEeCCCchhhHHHHHHcCCEEEE
Confidence            34445555555443    45689999999999999999883     333    379999999998876655443322111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh------cCCEEEEecc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK------YNILMIADEI  170 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~------~~i~li~Dea  170 (374)
                      .    +...+.  . .-|+++|+++++   ++++++++++++|++|.+. +.+.+++|.++|++      ||++||+||+
T Consensus       151 v----~~~~~~--~-~~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~De~  219 (398)
T 3ele_A          151 V----PADTEH--F-QIDFDALEERIN---AHTRGVIINSPNNPSGTVY-SEETIKKLSDLLEKKSKEIGRPIFIIADEP  219 (398)
T ss_dssp             E----CCCTTT--S-SCCHHHHHHTCC---TTEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHHHTSCCEEEEECT
T ss_pred             E----ecCCcC--C-cCCHHHHHHHhC---cCCCEEEEcCCCCCCCCCC-CHHHHHHHHHHHHhhhhccCCCeEEEEecc
Confidence            1    110000  0 017899998886   4789999988899999877 78889999999999      9999999999


Q ss_pred             ccCCcccccCccc--ccCCCCCcEEEeccccc-CCccchhhheeCHHHHh------hcCCCC-CCCCCCCCHHHHHHHHH
Q 017259          171 QSGLARSGRMLAS--DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVML------CIQPGE-HGSTFGGNPLASAVAIA  240 (374)
Q Consensus       171 ~~~~~~~g~~~~~--~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~------~~~~~~-~~~~~~~~~~~~~aa~~  240 (374)
                      |+++.+.|.....  ...+....+.|+||.++ +|+ |+||+++++++.+      .+.... ...+++.+.+++.++.+
T Consensus       220 ~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  298 (398)
T 3ele_A          220 YREIVYDGIKVPFVTKYYDNTLVCYSYSKSLSLPGE-RIGYVLVPDEVYDKAELYAAVCGAGRALGYVCAPSLFQKMIVK  298 (398)
T ss_dssp             TTTCBCTTCCCCCGGGTCSSEEEEEESTTTSSCTTT-CCEEEECCTTSTTHHHHHHHHHHHHHHTTCCCSCHHHHHHHTT
T ss_pred             ccccccCCCCcCChHhhcCCeEEEEehhhcCCCccc-eeEEEEEcchhhhHHHHHHHHHHHhhhccccCCCHHHHHHHHH
Confidence            9988666543222  22222233458999998 898 9999998876432      222111 12345667777777665


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---  317 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---  317 (374)
                      +++   .....++++++++++.+.|+++.     +.......+.++|+.++..    +..++.+.|.++||.++++.   
T Consensus       299 ~l~---~~~~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~  366 (398)
T 3ele_A          299 CQG---ATGDINAYKENRDLLYEGLTRIG-----YHCFKPDGAFYMFVKALED----DSNAFCEKAKEEDVLIVAADGFG  366 (398)
T ss_dssp             CTT---CCCCHHHHHHHHHHHHHHHHHHT-----CCEECCSBSSEEEEECSSS----CHHHHHHHHHTTTEECEESGGGT
T ss_pred             Hhc---CHHHHHHHHHHHHHHHHHHHHcC-----CeecCCCeeEEEEEEcCCC----CHHHHHHHHHHCCEEEeCccccC
Confidence            554   33457888888899988888762     2111223355578877654    57889999999999998863   


Q ss_pred             -CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 -DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 -~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       ++++||+++  .+++++++++++|+++++ ++
T Consensus       367 ~~~~iRis~~--~~~e~i~~~l~~l~~~l~-~~  396 (398)
T 3ele_A          367 CPGWVRISYC--VDREMIKHSMPAFEKIYK-KY  396 (398)
T ss_dssp             CTTEEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCeEEEEec--CCHHHHHHHHHHHHHHHH-Hh
Confidence             689999964  799999999999999998 65

>3a2b_A Serine palmitoyltransferase; vitamin B6-dependent enzyme fold type I, acyltransferase, PY phosphate; HET: PLP; 2.30A {Sphingobacterium multivorum}

Probab=99.97  E-value=1.7e-29  Score=237.79  Aligned_cols=307  Identities=13%  Similarity=0.157  Sum_probs=224.8

Q ss_pred             hHHHHHHHhccccC-----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS-----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+.....     ..+..+.++++++++++++|.+++++++||++|++.+++++     ..+|     |+|++.
T Consensus        64 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~v~~~~ggt~a~~~~~~~~-----~~~g-----d~V~~~  133 (398)
T 3a2b_A           64 KAAQDALEKYGTGCAGSRFLNGTLDIHVELEEKLSAYVGKEAAILFSTGFQSNLGPLSCL-----MGRN-----DYILLD  133 (398)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHS-----SCTT-----CEEEEE
T ss_pred             HHHHHHHHHcCCCCCCcCcccCCcHHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEC
Confidence            45666665543211     12345778899999999999999999999999999999987     5667     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCC-cEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGD-QIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~-~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .|+|.+........+             ..+..++..|++++++++++..+ +++++++++++|++|.+.+    +++|.
T Consensus       134 ~p~~~~~~~~~~~~g-------------~~~~~v~~~d~~~l~~~l~~~~~~~~~~v~~~~~~nptG~~~~----~~~l~  196 (398)
T 3a2b_A          134 ERDHASIIDGSRLSF-------------SKVIKYGHNNMEDLRAKLSRLPEDSAKLICTDGIFSMEGDIVN----LPELT  196 (398)
T ss_dssp             TTCCHHHHHHHHHSS-------------SEEEEECTTCHHHHHHHHHTSCSSSCEEEEEESBCTTTCCBCC----HHHHH
T ss_pred             CccCHHHHHHHHHcC-------------CceEEeCCCCHHHHHHHHHhhccCCceEEEEeCCCCCCCCccC----HHHHH
Confidence            999765543332222             22334455689999999986432 6899999999999999987    99999


Q ss_pred             HHHHhcCCEEEEeccccCC--cccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCC
Q 017259          156 DLCSKYNILMIADEIQSGL--ARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~  227 (374)
                      ++|++||++||+||+|+.+  ++.+..+ ...++.  .+|++  |+||.++.   +.||+++++++++.+....  ...+
T Consensus       197 ~~~~~~~~~li~De~~~~~~~~~~~~~~-~~~~~~~~~~di~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~  272 (398)
T 3a2b_A          197 SIANEFDAAVMVDDAHSLGVIGHKGAGT-ASHFGLNDDVDLIMGTFSKSLAS---LGGFVAGDADVIDFLKHNARSVMFS  272 (398)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSGGGCCH-HHHHTCGGGCSEEEEESSSTTCS---SCEEEEECHHHHHHHHHHCHHHHSS
T ss_pred             HHHHHcCcEEEEECCCcccccCCCCCch-HhhcCCCcCCeEEEecccccccC---CCcEEEeCHHHHHHHHHhcccceec
Confidence            9999999999999999844  3333322 222233  24666  89999983   1278889998888776421  2334


Q ss_pred             CCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      ...++..++++.++++.... ++..++++++.+++.+.|+++  .++ +.   .+.+.++++.++...   +..++.+.|
T Consensus       273 ~~~~~~~~a~~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~---~~~g~~~~~~~~~~~---~~~~l~~~l  343 (398)
T 3a2b_A          273 ASMTPASVASTLKALEIIQNEPEHIEKLWKNTDYAKAQLLDH--GFD-LG---ATESPILPIFIRSNE---KTFWVTKML  343 (398)
T ss_dssp             BCCCHHHHHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHT--TCC-BC---SCCSSEEEEECCCHH---HHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHHHhc--CCC-cC---CCCCCEEEEEcCCHH---HHHHHHHHH
Confidence            45555555566778876532 367788888888888888775  221 21   234788888876422   578899999


Q ss_pred             HHCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++||.+.++.       .+++|++++..++++++++++++|+++++ ++
T Consensus       344 ~~~gi~v~~~~~~~~~~~~~~iRis~~~~~~~e~i~~~~~~l~~~l~-~~  392 (398)
T 3a2b_A          344 QDDGVFVNPVVSPAVPAEESLIRFSLMATHTYDQIDEAIEKMVKVFK-QA  392 (398)
T ss_dssp             HHTTEECEEECTTTSCGGGCEEEEECCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             HHCCcEEEeeCCCCCCCCCceEEEEEeCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            99999998853       47899998887899999999999999998 65

>3cq5_A Histidinol-phosphate aminotransferase; PLP, PMP, amino-acid biosynthesis, histidine biosynthesis, pyridoxal phosphate; HET: PMP; 1.80A {Corynebacterium glutamicum} PDB: 3cq6_A* 3cq4_A

Probab=99.97  E-value=7.2e-29  Score=231.20  Aligned_cols=304  Identities=13%  Similarity=0.071  Sum_probs=216.1

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcc------cC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSM------FG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~------~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +++.+++.+.......|+.+...++++.++++      .+  .+++++++|++++++.+++++     ..+|     |+|
T Consensus        50 ~a~~~~~~~~~~~~~~y~~~~~~~l~~~la~~l~~~~g~~~~~~~v~~~~G~~~al~~~~~~l-----~~~g-----d~V  119 (369)
T 3cq5_A           50 ADLVATVDKIATELNRYPERDAVELRDELAAYITKQTGVAVTRDNLWAANGSNEILQQLLQAF-----GGPG-----RTA  119 (369)
T ss_dssp             HHHHHHHHHHGGGTTSCCCTTCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CSTT-----CEE
T ss_pred             HHHHHHHHhcccccccCCCccHHHHHHHHHHhhhhcccCCCChHhEEECCChHHHHHHHHHHh-----cCCC-----CEE
Confidence            45666665532112223333345777777776      33  468999999999999999988     4567     999


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ++.+|+|++....+...+......    +...+.    ..|+++++++++++  +++++++++++|++|.+.+    +++
T Consensus       120 l~~~~~y~~~~~~~~~~g~~~~~v----~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----~~~  185 (369)
T 3cq5_A          120 LGFQPSYSMHPILAKGTHTEFIAV----SRGADF----RIDMDVALEEIRAK--QPDIVFVTTPNNPTGDVTS----LDD  185 (369)
T ss_dssp             EEEESSCTHHHHHHHHTTCEEEEE----ECCTTS----SCCHHHHHHHHHHH--CCSEEEEESSCTTTCCCCC----HHH
T ss_pred             EEcCCChHHHHHHHHHcCCEEEEe----cCCcCC----CCCHHHHHHHhhcc--CCCEEEEeCCCCCCCCCCC----HHH
Confidence            999999988766544433221111    100000    12789999999853  5778888889999999987    888


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCccc-ccCC-CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLAS-DWEE-VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~-~~~~-~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~  230 (374)
                      +.++|+.+++++|+||+|+++.+....... ...+ ....+.|+||.++ +|+ |+||+++++++.+.+...  ..+++.
T Consensus       186 l~~l~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~  262 (369)
T 3cq5_A          186 VERIINVAPGIVIVDEAYAEFSPSPSATTLLEKYPTKLVVSRTMSKAFDFAGG-RLGYFVANPAFIDAVMLV--RLPYHL  262 (369)
T ss_dssp             HHHHHHHCSSEEEEECTTGGGCCSCCGGGGTTTCTTTEEEEEESSSTTSCGGG-CCEEEEECTHHHHHHHTT--SCTTCS
T ss_pred             HHHHHHhCCCEEEEECCchhhcCCcchHHHHhhCCCCEEEEEechHhcCCccc-ceEEEEeCHHHHHHHHHc--CCCCCC
Confidence            888888889999999999977542121111 1122 2234568999998 798 999999999988888753  335678


Q ss_pred             CHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          231 NPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      +++++.++.++++..+. ++..++++++.+++.+.|++.     ++. ..++.+.++++.++ .    +..++.+.|.++
T Consensus       263 ~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~-~~~~~~~~~~~~~~-~----~~~~l~~~l~~~  331 (369)
T 3cq5_A          263 SALSQAAAIVALRHSADTLGTVEKLSVERVRVAARLEEL-----GYA-VVPSESNFVFFGDF-S----DQHAAWQAFLDR  331 (369)
T ss_dssp             CHHHHHHHHHHHHTHHHHHTHHHHHHHHHHHHHHHHHHH-----TCE-EECCSSSEEEEECC-S----SHHHHHHHHHHT
T ss_pred             CHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHhC-----CCE-ECCCCCeEEEEECC-C----CHHHHHHHHHHC
Confidence            99999999888875321 245667777777777777663     221 12445778888776 2    578899999999


Q ss_pred             CeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          310 GILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       310 Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ||.+.+++ ++++|++++   +++++++++++|+++++
T Consensus       332 gi~v~~~~~~~~iRis~~---~~~~i~~~~~~l~~~~~  366 (369)
T 3cq5_A          332 GVLIRDVGIAGHLRTTIG---VPEENDAFLDAAAEIIK  366 (369)
T ss_dssp             TEECBCCSCTTEEEEECC---CHHHHHHHHHHHHHHHT
T ss_pred             CEEEEECCCCCeEEEEeC---CHHHHHHHHHHHHHHHh
Confidence            99999863 589999965   78999999999999886

>2z61_A Probable aspartate aminotransferase 2; amino acid aminotransferase, kynurenine aminotransferase, MJ0684, cytoplasm; HET: LLP; 2.20A {Methanococcus jannaschii}

Probab=99.97  E-value=2.3e-30  Score=241.36  Aligned_cols=280  Identities=12%  Similarity=0.168  Sum_probs=204.6

Q ss_pred             cHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           22 KFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        22 ~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ...++++.+++++        ..+++++++||++|++.+++++     .++|     |+|++.+|+||+....+...+. 
T Consensus        67 ~~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~-  135 (370)
T 2z61_A           67 GILELREKISELYKDKYKADIIPDNIIITGGSSLGLFFALSSI-----IDDG-----DEVLIQNPCYPCYKNFIRFLGA-  135 (370)
T ss_dssp             CCHHHHHHHHHHHHHHSSCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHHHTTC-
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChhhEEECCChHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhHHHHHHHcCC-
Confidence            3455555555543        3468999999999999999988     5567     9999999999987655443321 


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                                  .+..++ .|+++|+++++   ++++++++++++|++|.+.+    ++ |.++|++||++||+||+|++
T Consensus       136 ------------~~~~v~-~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~~----~~-l~~~~~~~~~~li~De~~~~  194 (370)
T 2z61_A          136 ------------KPVFCD-FTVESLEEALS---DKTKAIIINSPSNPLGEVID----RE-IYEFAYENIPYIISDEIYNG  194 (370)
T ss_dssp             ------------EEEEEC-SSHHHHHHHCC---SSEEEEEEESSCTTTCCCCC----HH-HHHHHHHHCSEEEEECTTTT
T ss_pred             ------------EEEEeC-CCHHHHHHhcc---cCceEEEEcCCCCCcCcccC----HH-HHHHHHHcCCEEEEEcchhh
Confidence                        122333 48999998886   47888999888999999987    66 99999999999999999998


Q ss_pred             CcccccCcccccC-CC-CCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH-Hhh
Q 017259          174 LARSGRMLASDWE-EV-RPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV-IRD  247 (374)
Q Consensus       174 ~~~~g~~~~~~~~-~~-~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~-~~~  247 (374)
                      +.+.|.......+ +. ..+  +.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++. ...
T Consensus       195 ~~~~g~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  273 (370)
T 2z61_A          195 LVYEGKCYSAIEFDENLEKTILINGFSKLYAMTGW-RIGYVISNDEIIEAILKLQQNLFISAPTISQYAALKAFEKETER  273 (370)
T ss_dssp             CBSSSCCCCGGGTCTTCSSEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHTSSSCHHHHHHHGGGGSHHHHH
T ss_pred             cccCCCCcCHHHccCCCCcEEEEecChhccCCccc-eEEEEEECHHHHHHHHHHHhhcccCCCHHHHHHHHHHHhccCHH
Confidence            7655543232222 11 223  448999998 788 9999999999888876544445677899999988888865 221


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC------CC
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT------HD  318 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~------~~  318 (374)
                        ++..++++++.+++.+.|++.  .+   ....+..+.++|+.++.     +..++.+.|. ++||.+.++      ..
T Consensus       274 ~~~~~~~~~~~~~~~l~~~L~~~--g~---~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~~gi~v~~g~~f~~~~~  343 (370)
T 2z61_A          274 EINSMIKEFDRRRRLVLKYVKDF--GW---EVNNPIGAYYVFPNIGE-----DGREFAYKLLKEKFVALTPGIGFGSKGK  343 (370)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT--TC---BCCCCCBTTEECCBCSS-----CHHHHHHHHHHHHCEECEEGGGGCGGGS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHc--CC---eecCCCcceEEEEecCC-----CHHHHHHHHHHhCCEEEeCchhhCCCCC
Confidence              245566667777777777654  12   11112235556666653     3678999998 789999875      26


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++||+++  .+++++++++++|+++++
T Consensus       344 ~~~Ri~~~--~~~~~i~~~~~~l~~~l~  369 (370)
T 2z61_A          344 NYIRISYA--NSYENIKEGLERIKEFLN  369 (370)
T ss_dssp             SBEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             CEEEEEEe--CCHHHHHHHHHHHHHHHh
Confidence            79999977  699999999999998875

>2x5d_A Probable aminotransferase; HET: LLP PLP; 2.25A {Pseudomonas aeruginosa}

Probab=99.97  E-value=4.1e-30  Score=243.17  Aligned_cols=302  Identities=11%  Similarity=0.155  Sum_probs=210.9

Q ss_pred             CCcHHHHHHHHhccc----CC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259           20 NDKFPVFAERLTSMF----GY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~   90 (374)
                      .....++++.+++++    |.     +++++|+|+++|++.+++++     ..+|     |+|++..|+||+....+...
T Consensus        74 ~~g~~~l~~~ia~~~~~~~g~~~~~~~~v~~t~g~~~a~~~~~~~~-----~~~g-----d~Vl~~~p~~~~~~~~~~~~  143 (412)
T 2x5d_A           74 SRGIPRLRRAISHWYRDRYDVQIDPESEAIVTIGSKEGLAHLMLAT-----LDHG-----DTILVPNPSYPIHIYGAVIA  143 (412)
T ss_dssp             TTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCCCcCEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHc
Confidence            344566666666655    53     58999999999999999988     5667     99999999999876655443


Q ss_pred             cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      +......    +...+.. .. .|+++++++++   ++++++++++++|++|.+. +.+++++|.++|++||++||+||+
T Consensus       144 g~~~~~~----~~~~~~~-~~-~d~~~l~~~i~---~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~  213 (412)
T 2x5d_A          144 GAQVRSV----PLVPGID-FF-NELERAIRESI---PKPRMMILGFPSNPTAQCV-ELDFFERVVALAKQYDVMVVHDLA  213 (412)
T ss_dssp             TCEEEEE----ECSTTSC-HH-HHHHHHHHTEE---SCCSEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             CCEEEEe----ecCCccC-CC-CCHHHHHHhcc---cCceEEEECCCCCCCCCcC-CHHHHHHHHHHHHHcCCEEEEecc
Confidence            3211110    1100000 00 14677777665   4677888877888888776 789999999999999999999999


Q ss_pred             ccCCcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       171 ~~~~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      |+++.+.|.. .....+    +....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.++++.
T Consensus       214 ~~~~~~~g~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~  292 (412)
T 2x5d_A          214 YADIVYDGWKAPSIMQVPGAKDIAVEFFTLSKSYNMAGW-RIGFMVGNPELVSALARIKSYHDYGTFTPLQVAAIAALEG  292 (412)
T ss_dssp             TTTCBCTTCCCCCGGGSTTGGGTEEEEEECC-CCSCTTS-CCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHS
T ss_pred             ccccccCCCCCCChhhccCccCcEEEEecCccccCCccc-ceEEEEcCHHHHHHHHHHHhhhccCCCHHHHHHHHHHHhC
Confidence            9987655532 122211    22223458999998 798 9999999999888877544445678899999999888874


Q ss_pred             Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC----
Q 017259          245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH----  317 (374)
Q Consensus       245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~----  317 (374)
                      ..+  +++.++++++.+++.+.|++.  .+. +.  ....+.++|+.++......+..++++.|++ +||.+.++.    
T Consensus       293 ~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~--~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~gi~v~~g~~f~~  367 (412)
T 2x5d_A          293 DQQCVRDIARQYQQRRDVLVKGLREA--GWM-VE--NPKASMYVWAKIPEPYAHLGSLEFAKKLLQDAKVSVSPGIGFGD  367 (412)
T ss_dssp             CSHHHHHHHHHHHHHHHHHHHHHHHH--TCC-CC--CCSBSSEEEEECCTTTGGGCHHHHHHHHHHHHCEECEEGGGGCG
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHC--CCE-ec--CCCeeeEEEEEcCCccCCCCHHHHHHHHHHHCCEEEeCchhhCC
Confidence            321  245666777777777777765  221 11  122355778777532100136789999875 699998752    


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                        .+++||+++.  +++++++++++|+++++ ++.
T Consensus       368 ~~~~~iRis~~~--~~~~l~~~l~~l~~~l~-~~~  399 (412)
T 2x5d_A          368 YGDDHVRFALIE--NRDRLRQAVRGIKAMFR-ADG  399 (412)
T ss_dssp             GGTTEEEEECCS--CHHHHHHHHHHHHHHHH-HTT
T ss_pred             CCCCeEEEEecC--CHHHHHHHHHHHHHHHH-hcC
Confidence              5799999775  89999999999999998 653

>3ezs_A Aminotransferase ASPB; NP_207418.1, structural genomics, JOI for structural genomics, JCSG; HET: MSE; 2.19A {Helicobacter pylori 26695} SCOP: c.67.1.0

Probab=99.97  E-value=4.6e-30  Score=239.70  Aligned_cols=281  Identities=11%  Similarity=0.027  Sum_probs=201.5

Q ss_pred             CcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccc--cCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           21 DKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKK--KFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~--G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++++.+++.+.+.+|    .+++++|+|++++++.+++.+     .++  |     |+|++..|+|++....+...+...
T Consensus        63 ~lr~~la~~l~~~~g~~~~~~~i~~t~g~~~al~~~~~~~-----~~~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~  132 (376)
T 3ezs_A           63 SLRAAQRGFFKRRFKIELKENELISTLGSREVLFNFPSFV-----LFDYQN-----PTIAYPNPFYQIYEGAAKFIKAKS  132 (376)
T ss_dssp             HHHHHHHHHHHHHHSCCCCGGGEEEESSSHHHHHHHHHHH-----TTTCSS-----CEEEEEESCCTHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCCCHHHEEECcCcHHHHHHHHHHH-----cCCCCC-----CEEEEecCCcHhHHHHHHHcCCEE
Confidence            344445555544444    468999999999999999988     455  6     999999999998766554443221


Q ss_pred             cccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           95 EAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                   ..++.+     ++ ++++++..   +++++++++++|++|.+. +.+.+++|.++|++||++||+||
T Consensus       133 -------------~~~~~~~~~~~~~-~l~~~~~~---~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De  194 (376)
T 3ezs_A          133 -------------LLMPLTKENDFTP-SLNEKELQ---EVDLVILNSPNNPTGRTL-SLEELISWVKLALKHDFILINDE  194 (376)
T ss_dssp             -------------EEEECCGGGTSCC-CCCHHHHH---HCSEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             -------------EEcccCCCCCcch-hHHhhhcc---CCCEEEEcCCCCCcCCCC-CHHHHHHHHHHHHHcCcEEEEEc
Confidence                         112221     12 45566653   577888888888899877 78899999999999999999999


Q ss_pred             cccCCcccccCcccc---------cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          170 IQSGLARSGRMLASD---------WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       170 a~~~~~~~g~~~~~~---------~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      +|+++.+.+......         ..+....+.|+||.++ +|+ |+||+++++++.+.+.......+++.+++++.++.
T Consensus       195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  273 (376)
T 3ezs_A          195 CYSEIYENTPPPSLLEACMLAGNEAFKNVLVIHSLSKRSSAPGL-RSGFIAGDSRLLEKYKAFRAYLGYTSANAIQKASE  273 (376)
T ss_dssp             TTTTCBSSSCCCCHHHHHHHTTCTTCTTEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHHHTTTCCCCCHHHHHHHH
T ss_pred             cchhhccCCCCCCHHHccccccccccCcEEEEecchhccCCccc-eeEEEeeCHHHHHHHHHHHhhhcCCCChHHHHHHH
Confidence            999886665433221         2233344569999997 798 99999999999888876556667888999999998


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccC--
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPT--  316 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~--  316 (374)
                      ++++.   .+..++.++.....++.+.+....   +.  .+..+.++|+.++      +..++++.|.+ +||.+.++  
T Consensus       274 ~~l~~---~~~~~~~~~~~~~~~~~l~~~l~~---~~--~~~~~~~~~~~~~------~~~~~~~~l~~~~gi~v~~g~~  339 (376)
T 3ezs_A          274 AAWLD---DRHAEFFRNIYANNLKLARKIFKN---TL--IYPYSFYVYLPVQ------NGENFAKTLYQNEGIITLPALY  339 (376)
T ss_dssp             HHHHC---SHHHHHHHHHHHHHHHHHHHHSTT---CC--CCSBSSEEEEECS------CHHHHHHHHHHHHCCBCEEGGG
T ss_pred             HHHhC---cHHHHHHHHHHHHHHHHHHHHhcC---CC--CCCcceEEEEECC------CHHHHHHHHHHhCCEEEeCcHH
Confidence            88874   222333333333333333332211   21  3456778888776      36789999998 89999763  


Q ss_pred             ------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 ------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 ------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                            ..+++||+++  .+++++++++++|+++++
T Consensus       340 ~~~~~~~~~~iRis~~--~~~~~i~~~l~~l~~~l~  373 (376)
T 3ezs_A          340 LGRNRIGADYVRLALV--YDTPLLEKPLEIIETYRE  373 (376)
T ss_dssp             GCSTTTTTTEEEEECC--SCHHHHHHHHHHHHHHHC
T ss_pred             hCCCCCCCCeEEEEEc--CCHHHHHHHHHHHHHHHH
Confidence                  3689999965  499999999999999987

>1fc4_A 2-amino-3-ketobutyrate conenzyme A ligase; 2-amino-3-ketobutyrate COA ligase, pyridoxal phosphate, COEN transferase, structural genomics; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.4

Probab=99.97  E-value=9e-30  Score=239.84  Aligned_cols=290  Identities=19%  Similarity=0.265  Sum_probs=221.4

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .+...++++.|++++|.++.++++||+++++.+++++     .++|     |+|++..++|..... .....+       
T Consensus        89 ~~~~~~l~~~la~~~g~~~~i~~~sGs~a~~~~~~~~-----~~~g-----d~v~~~~~~~~~~~~-~~~~~g-------  150 (401)
T 1fc4_A           89 QDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETL-----LGAE-----DAIISDALNHASIID-GVRLCK-------  150 (401)
T ss_dssp             BHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH-----CCTT-----CEEEEETTCCHHHHH-HHHTSC-------
T ss_pred             cHHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHH-----cCCC-----CEEEEcchhHHHHHH-HHHHcC-------
Confidence            5678889999999998888888899999999988887     5667     899999888644332 222211       


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCC---cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGD---QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA  175 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~---~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~  175 (374)
                           ..+..++..|++++++++++.++   +++++++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++.
T Consensus       151 -----~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~De~~~~g~~  221 (401)
T 1fc4_A          151 -----AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKGVCDLADKYDALVMVDDSHAVGFV  221 (401)
T ss_dssp             -----SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHHHHHHHHHTTEEEEEECTTTTTTS
T ss_pred             -----CceEEECCCCHHHHHHHHHHhhccCCCceEEEEeCCcCCCCCCCC----HHHHHHHHHHcCCEEEEECccccccc
Confidence                 22344455689999999985322   6889999999999999997    9999999999999999999996 773


Q ss_pred             -ccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhh-
Q 017259          176 -RSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRD-  247 (374)
Q Consensus       176 -~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~~~~~-  247 (374)
                       +.|..+ ....++  ..|++  |+||.++++.  +||+++++++++.+....  ...+++.++++++++.++++.+.. 
T Consensus       222 ~~~g~~~-~~~~~~~~~~di~~~s~sK~~~~~~--gG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~  298 (401)
T 1fc4_A          222 GENGRGS-HEYCDVMGRVDIITGTLGKALGGAS--GGYTAARKEVVEWLRQRSRPYLFSNSLAPAIVAASIKVLEMVEAG  298 (401)
T ss_dssp             STTSCCH-HHHTTCTTCCSEEEEESSSTTCSSS--CEEEEECHHHHHHHHHHCHHHHHSCCCCHHHHHHHHHHHHHHHTC
T ss_pred             CCCCCcc-HHHcCCCcCCcEEEecchhhccCCC--CEEEEcCHHHHHHHHHhCcCceeCCCCCHHHHHHHHHHHHHHhcC
Confidence             344432 122222  34665  8999997665  388999999888776432  223567899999999999988753 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------CCE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------DTI  320 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------~~~  320 (374)
                      +++.++++++.+++.+.|++..  + .+.   ++.+.++++.+++..   +..++.+.|.++||.++++.       .++
T Consensus       299 ~~~~~~~~~~~~~l~~~L~~~g--~-~~~---~~~~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~  369 (401)
T 1fc4_A          299 SELRDRLWANARQFREQMSAAG--F-TLA---GADHAIIPVMLGDAV---VAQKFARELQKEGIYVTGFFYPVVPKGQAR  369 (401)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTT--C-CBC---CSSSSEEEEEEECHH---HHHHHHHHHHHTTEECCEECTTSSCTTCEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHcC--C-ccc---CCCCCEEEEEcCChH---HHHHHHHHHHHCCcEEeeecCCCCCCCCce
Confidence            4678888888888888887752  2 122   356788888886422   57789999999999998753       358


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +|++++...+++++++++++|+++++ ++
T Consensus       370 iRi~~~~~~~~~~i~~~~~~l~~~~~-~~  397 (401)
T 1fc4_A          370 IRTQMSAAHTPEQITRAVEAFTRIGK-QL  397 (401)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred             EEEEeCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            99998888999999999999999998 65

>1b5p_A Protein (aspartate aminotransferase); pyridoxal enzyme; HET: PLP; 1.80A {Thermus thermophilus} SCOP: c.67.1.1 PDB: 1gck_A* 1b5o_A* 5bj4_A* 1gc4_A* 1gc3_A* 1bkg_A* 5bj3_A* 1bjw_A*

Probab=99.97  E-value=1.1e-29  Score=238.20  Aligned_cols=295  Identities=15%  Similarity=0.165  Sum_probs=204.3

Q ss_pred             CcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ++++.+++++.+..|    .+++++|+|+++|++.+++.+     .++|     |+|++..|+|+++...+...+.....
T Consensus        72 ~lr~~ia~~~~~~~g~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~~~~~  141 (385)
T 1b5p_A           72 ELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-----LDPG-----DEVIVLSPYWVSYPEMVRFAGGVVVE  141 (385)
T ss_dssp             HHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHHHHTTCEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCChHHEEEcCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCchhHHHHHHHcCCEEEE
Confidence            344445555544333    468999999999999999988     5667     99999999998765544433221111


Q ss_pred             cccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           97 IRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    +....   -.+ .|+++++++++   ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+++.
T Consensus       142 v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~  210 (385)
T 1b5p_A          142 V----ETLPE---EGFVPDPERVRRAIT---PRTKALVVNSPNNPTGAVY-PKEVLEALARLAVEHDFYLVSDEIYEHLL  210 (385)
T ss_dssp             E----ECCGG---GTTCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCB
T ss_pred             e----ecCcc---cCCCCCHHHHHHhcC---CCCEEEEEeCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEccchhcc
Confidence            1    10000   001 27888888876   4688888888889999777 89999999999999999999999999875


Q ss_pred             ccccCcccccCCCCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH---Hhh--
Q 017259          176 RSGRMLASDWEEVRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDV---IRD--  247 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~---~~~--  247 (374)
                      +.|....+..+.-..+  +.||||.++ +|+ |+||+++++++.+.+.......+++.+.+++.++.++++.   ..+  
T Consensus       211 ~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~  289 (385)
T 1b5p_A          211 YEGEHFSPGRVAPEHTLTVNGAAKAFAMTGW-RIGYACGPKEVIKAMASVSRQSTTSPDTIAQWATLEALTNQEASRAFV  289 (385)
T ss_dssp             SSSCCCCGGGTCTTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCCHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cCCCCCCHHHcCCCCEEEEEechhhcCCccc-ceEEEEeCHHHHHHHHHHHhhccCCCCHHHHHHHHHHHhCCCcchHHH
Confidence            5442222222211112  338999998 698 9999999998888776543445667788999988888863   222  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEE
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRL  323 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi  323 (374)
                      ++..++++++++++.+.|+++  .+ .+.  .+..+.++|+.++..  +.+..++.+.|.++||.++++.    .+++||
T Consensus       290 ~~~~~~~~~~~~~l~~~L~~~--g~-~~~--~~~~~~~~~~~~~~~--~~~~~~l~~~l~~~gv~v~~g~~f~~~~~iRi  362 (385)
T 1b5p_A          290 EMAREAYRRRRDLLLEGLTAL--GL-KAV--RPSGAFYVLMDTSPI--APDEVRAAERLLEAGVAVVPGTDFAAFGHVRL  362 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH--TC-CBC--CCSBTTEEEEECTTT--CSSHHHHHHHHHHTTEECEESGGGTCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHC--CC-eec--CCCeeEEEEEecCCC--CCCHHHHHHHHHHCCeEEecccccCCCCeEEE
Confidence            245566677777777777765  22 111  122345566666521  1257889999999999998863    579999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 017259          324 TPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++.  .+++++++++++|+++++
T Consensus       363 s~~--~~~~~i~~~l~~l~~~l~  383 (385)
T 1b5p_A          363 SYA--TSEENLRKALERFARVLG  383 (385)
T ss_dssp             ECC--SCHHHHHHHHHHGGGGC-
T ss_pred             Eec--CCHHHHHHHHHHHHHHHh
Confidence            955  789999999998877654

>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2; protein-cofactor-inhibitor complex, V6-dependent enzyme, LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP: c.67.1.4 PDB: 1iax_A*

Probab=99.97  E-value=2e-29  Score=239.68  Aligned_cols=297  Identities=13%  Similarity=0.118  Sum_probs=206.8

Q ss_pred             HHHHHHHHhcccC----------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           23 FPVFAERLTSMFG----------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        23 ~~~l~~~l~~~~~----------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ..++++.++++++          .+++++++|++++++.+++++     ..+|     |+|++..|+|+++........+
T Consensus        85 ~~~lr~~la~~~~~~~g~~~~~~~~~i~~~~G~~~ai~~~~~~~-----~~~g-----d~Vl~~~p~y~~~~~~~~~~~g  154 (428)
T 1iay_A           85 LPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL-----ADPG-----DAFLVPSPYYPAFNRDLRWRTG  154 (428)
T ss_dssp             CHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTTHHHHTTTTTC
T ss_pred             cHHHHHHHHHHHHHhcCCCCCCChhhEEEccChHHHHHHHHHHh-----CCCC-----CeEEEccCCCcchHHHHHHhcC
Confidence            4556666666542          578999999999999999988     5567     9999999999987543322222


Q ss_pred             CccccccCCCCCCCceeccC-CCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           93 DNEAIRGFGPLLPGHLKVDF-GDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      ......   +...+.   .+ .|++++++++++   .+++++++++++++|++|.+. +++++++|.++|++||++||+|
T Consensus       155 ~~~~~v---~~~~~~---~~~~d~~~l~~~l~~~~~~~~~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~D  227 (428)
T 1iay_A          155 VQLIPI---HCESSN---NFKITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCD  227 (428)
T ss_dssp             CEEEEE---CCCTTT---TTCCCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CEEEEe---ecCCcc---CCcCCHHHHHHHHHHHHhcCCceEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHHCCeEEEEe
Confidence            111111   110000   01 278999998875   234788888888888899776 8999999999999999999999


Q ss_pred             ccccCCcccccCc-ccccC-------CCCCc----EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHH
Q 017259          169 EIQSGLARSGRML-ASDWE-------EVRPD----MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       169 ea~~~~~~~g~~~-~~~~~-------~~~~d----~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      |+|+++.+.+..+ .....       ++.+|    +.|+||.++ +|+ |+||+++ ++++.+.+...  ...++.+.++
T Consensus       228 ea~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~viv~~s~sK~~g~~Gl-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~  304 (428)
T 1iay_A          228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKM--SSFGLVSTQT  304 (428)
T ss_dssp             CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHH--HTTSCCCHHH
T ss_pred             ccccccccCCCCccCHHHhccccccccCCCCcEEEEecchhhcCCCCc-eEEEEEeCCHHHHHHHHHH--HhcccCCHHH
Confidence            9999865544322 11111       12255    459999998 798 9999988 67777776532  2346778999


Q ss_pred             HHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCC---chhHHHHHHH
Q 017259          235 SAVAIASLDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTAL---PVSAYDICLK  305 (374)
Q Consensus       235 ~~aa~~al~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~---~~~~~~~~~~  305 (374)
                      +.++.++++...   .  ++..++++++++++.+.|+++     ++.. ..+ .+.++|+.++....   .....++.+.
T Consensus       305 ~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~~  378 (428)
T 1iay_A          305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-----GIKC-LKNNAGLFCWMDLRPLLRESTFDSEMSLWRV  378 (428)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCB-CCCSSSSEEEEECGGGCSSSSHHHHHHHHHH
T ss_pred             HHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCcc-cCCCeeEEEEEechhhcCCCchhHHHHHHHH
Confidence            988888876432   1  234555666666666666654     1211 122 57788888764210   0135689999


Q ss_pred             HHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++ ||.++++.      .+++||+++ ..+++++++++++|+++++
T Consensus       379 l~~~~gi~v~~~~~~~~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~  425 (428)
T 1iay_A          379 IINDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             HHHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEeCchhhCCCCCCEEEEEEe-cCCHHHHHHHHHHHHHHHh
Confidence            9987 99998753      479999987 5799999999999999987

>2x5f_A Aspartate_tyrosine_phenylalanine pyridoxal-5' phosphate-dependent aminotransferase...; HET: PLP EPE; 1.80A {Staphylococcus aureus}

Probab=99.97  E-value=1.6e-29  Score=240.42  Aligned_cols=302  Identities=10%  Similarity=0.086  Sum_probs=214.3

Q ss_pred             cHHHHHHHHhccc-----C--CCe---EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc-c
Q 017259           22 KFPVFAERLTSMF-----G--YDM---VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS-M   90 (374)
Q Consensus        22 ~~~~l~~~l~~~~-----~--~~~---~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~-~   90 (374)
                      ...++++.+++++     +  .++   +++|+|+++|++.+++.+     .++|     |+|++.+|+|++....+.. .
T Consensus        89 g~~~lr~~ia~~~~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~y~~~~~~~~~~~  158 (430)
T 2x5f_A           89 GIEELRDLWQQKMLRDNPELSIDNMSRPIVTNALTHGLSLVGDLF-----VNQD-----DTILLPEHNWGNYKLVFNTRN  158 (430)
T ss_dssp             CCHHHHHHHHHHHHHHCTTCCGGGBCCCEEESHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTHHHHHHTTTT
T ss_pred             CCHHHHHHHHHHHhccCcccCCCccceEEEcCCchHHHHHHHHHH-----hCCC-----CEEEEcCCcCccHHHHHHHhc
Confidence            4667777777766     4  457   999999999999999988     5667     9999999999987655544 3


Q ss_pred             cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-----cCCEE
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-----YNILM  165 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-----~~i~l  165 (374)
                      +......    +.... ..  ..|++++++++++++.+++++++++++|++|.+. +.+++++|.++|++     ||+++
T Consensus       159 g~~~~~~----~~~~~-~~--~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~~~~~~l  230 (430)
T 2x5f_A          159 GANLQTY----PIFDK-DG--HYTTDSLVEALQSYNKDKVIMILNYPNNPTGYTP-THKEVTTIVEAIKALANKGTKVIA  230 (430)
T ss_dssp             CCEEEEE----CCBCT-TS--CBCSHHHHHHHHHCCSSEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTTCEEEE
T ss_pred             CCeEEEE----eccCc-cC--CcCHHHHHHHHHhcCCCCEEEEEcCCCCCCCCcC-CHHHHHHHHHHHHhhhhccCCEEE
Confidence            3221111    11010 00  1278999999986555788888888888899766 89999999999999     99999


Q ss_pred             EEeccccCCcccccCc-cc--ccCCCCCc------EEEeccccc-CCccchhhhee---CHHHHhhcCCCCCC----CCC
Q 017259          166 IADEIQSGLARSGRML-AS--DWEEVRPD------MVILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STF  228 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~-~~--~~~~~~~d------~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~~~~----~~~  228 (374)
                      |+||+|+++.+.+..+ ..  ...+..++      +.|+||.++ +|+ |+||+++   ++++.+.+......    .++
T Consensus       231 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~  309 (430)
T 2x5f_A          231 VVDDAYYGLFYEDVYTQSLFTALTNLHSNAILPIRLDGATKEFFAWGF-RVGFMTFGTSDQTTKEVLEAKVKGLIRSNIS  309 (430)
T ss_dssp             EEECTTTTCBCSSSCCSCHHHHHHTTCCTTEEEEEEEEHHHHTTCGGG-CCEEEEEBCCCHHHHHHHHHHHHHHHHTTTS
T ss_pred             EEehhcccccCCcccchHHHHHHhhccCCcceEEEEEecccCCCCCCC-CeEEEEEecCCHHHHHHHHHHHhhhhhcccC
Confidence            9999999876655421 21  11122333      448899998 798 9999999   98888887653333    567


Q ss_pred             CCCHHHHHHHHHHHH-HH---hh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          229 GGNPLASAVAIASLD-VI---RD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       229 ~~~~~~~~aa~~al~-~~---~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      +.+++++.++.++++ ..   .. +...++++++.+++.+.|++..... ++.......+.++|+.++ ..   +..+++
T Consensus       310 ~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-g~~~~~~~~g~~~~~~~~-~~---~~~~~~  384 (430)
T 2x5f_A          310 SGPLPTQSAVKHVLKNNKQFDKEIEQNIQTLKERYEVTKEVVYADQYHS-HWQAYDFNSGYFMAIKVH-DV---DPEALR  384 (430)
T ss_dssp             SCCHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHTCGGGTT-TEEECCCCBSSEEEEEES-SS---CHHHHH
T ss_pred             CCChHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CceeeCCCceEEEEeCCC-CC---CHHHHH
Confidence            889999999998887 32   11 1244445555555555554211021 222112223556888887 32   678899


Q ss_pred             HHHHH-CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          304 LKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       304 ~~l~~-~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.|.+ +||.+.++..+++||+++. .+++++++++++|+++++ ++
T Consensus       385 ~~l~~~~gi~v~~g~~~~iRis~~~-~~~e~i~~~~~~l~~~l~-~~  429 (430)
T 2x5f_A          385 KHLIDKYSIGVIALNATDIRIAFSC-VEKDDIPHVFDSIAKAID-DL  429 (430)
T ss_dssp             HHHHHHHCEECEECSSSEEEEEGGG-SCGGGHHHHHHHHHHHHH-HH
T ss_pred             HHHHHhCCEEEecCCCCeEEEEEec-CCHHHHHHHHHHHHHHHH-hc
Confidence            99998 8999999877899999875 588999999999999987 53

>1xi9_A Putative transaminase; alanine aminotransferase, southeast collaboratory for structural genomics, secsg; HET: PLP; 2.33A {Pyrococcus furiosus} SCOP: c.67.1.1

Probab=99.97  E-value=8.6e-30  Score=240.48  Aligned_cols=294  Identities=14%  Similarity=0.097  Sum_probs=203.3

Q ss_pred             HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++        ..+++++|+|+++|++.+++++     .++|     |+|++.+|+|++....+...+...
T Consensus        80 ~~~l~~~la~~l~~~~g~~~~~~~v~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~  149 (406)
T 1xi9_A           80 LPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-----LDPG-----DEILVPGPSYPPYTGLVKFYGGKP  149 (406)
T ss_dssp             CHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHHTTCEE
T ss_pred             cHHHHHHHHHHHHHhcCCCCCHHHEEEcCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCCccHHHHHHHcCCEE
Confidence            445555555543        2468999999999999999988     4567     999999999988765544332211


Q ss_pred             cccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...    +...+   -.+ .|+++|+++++   ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|++
T Consensus       150 ~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~a~~~~~~li~De~~~~  218 (406)
T 1xi9_A          150 VEY----RTIEE---EDWQPDIDDIRKKIT---DRTKAIAVINPNNPTGALY-DKKTLEEILNIAGEYEIPVISDEIYDL  218 (406)
T ss_dssp             EEE----EEEGG---GTSEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEEECTTTT
T ss_pred             EEe----ecCCC---cCCcCCHHHHHHhhC---cCceEEEEECCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEEcCccc
Confidence            110    00000   001 17899998887   4688888988888999776 789999999999999999999999998


Q ss_pred             CcccccCcccccCCCCC-cEE--Eeccccc-CCccchhhhe--eCH----HHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRP-DMV--ILGKALG-GGVIPVSAVL--ADK----EVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~-d~~--s~sK~~~-~G~~~~G~~~--~~~----~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +.+.+.......++... +++  |+||.++ +|+ |+||++  .++    ++.+.+....... ++.+++++.++.++++
T Consensus       219 ~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~~~a~~~~l~  296 (406)
T 1xi9_A          219 MTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARIR-LCPNTPAQFAAIAGLT  296 (406)
T ss_dssp             CBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHHT-CCSCSHHHHHHHHHHH
T ss_pred             cccCCCCCCHHHcCCCceEEEEeccccccCCCcc-EEEEEEEecCchhHHHHHHHHHHHHHhh-cCCCHHHHHHHHHHHh
Confidence            76533322322222112 333  7899998 788 999998  888    8888776432223 6778889988888886


Q ss_pred             HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc--CCCchhHHHHHHHHH-HCCeEeccCC-
Q 017259          244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK--TALPVSAYDICLKMK-ERGILAKPTH-  317 (374)
Q Consensus       244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~--~~~~~~~~~~~~~l~-~~Gi~v~~~~-  317 (374)
                      ...+  +++.++++++.+++.+.|++    +|++.......+.++|+.++.  ..   +..++.+.|+ ++||.+.++. 
T Consensus       297 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~l~~~~gi~v~~g~~  369 (406)
T 1xi9_A          297 GPMDYLKEYMKKLKERRDYIYKRLNE----IPGISTTKPQGAFYIFPKIEVGPWK---NDKEFVLDVLHNAHVLFVHGSG  369 (406)
T ss_dssp             SCCHHHHHHHHHHHHHHHHHHHHHHT----STTEECCCCCBSSEECCEECSCSCS---SHHHHHHHHHHHHCEECEEGGG
T ss_pred             CCcHHHHHHHHHHHHHHHHHHHHHHh----CCCCeeecCCeeEEEEEecCccCCC---CHHHHHHHHHHhCCEEEeCchh
Confidence            3221  23445555555555555543    332221112234555656653  22   5788999998 8899998753 


Q ss_pred             -----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 -----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 -----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                           .+++||+++  .+++++++++++|+++++ ++
T Consensus       370 f~~~~~~~lRis~~--~~~~~i~~~~~~l~~~l~-~~  403 (406)
T 1xi9_A          370 FGEYGAGHFRAVFL--PPIEILEEAMDRFEKFMK-ER  403 (406)
T ss_dssp             GCGGGTTBEEEECC--SCHHHHHHHHHHHHHHHH-HC
T ss_pred             cCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH-HH
Confidence                 679999976  899999999999999998 54

>1bs0_A Protein (8-amino-7-oxonanoate synthase); PLP-dependent acyl-COA synthase, biotin biosynthesis, 8-AMIN oxonanoate synthase; 1.65A {Escherichia coli} SCOP: c.67.1.4 PDB: 2g6w_A* 1dje_A* 1dj9_A*

Probab=99.97  E-value=3.7e-29  Score=234.28  Aligned_cols=303  Identities=19%  Similarity=0.230  Sum_probs=220.7

Q ss_pred             hHHHHHHHhccc--cCcC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL--SSRA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +++.+++.+...  ..+.   +..+...++++.+++++|.++.++++||+++++.+++++     .++|     |.|++.
T Consensus        60 ~a~~~~~~~~~~~~~~~~~~~g~~~~~~~l~~~la~~~g~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~v~~~  129 (384)
T 1bs0_A           60 RAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM-----MAKE-----DRIAAD  129 (384)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEE
T ss_pred             HHHHHHHHHhCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----cEEEEc
Confidence            456666655221  1122   335778899999999999888899999999999999887     5667     899988


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      .++|... .......+            ..+..++..|++++++++++.+++++++++++++|++|.+.+    +++|.+
T Consensus       130 ~~~~~~~-~~~~~~~g------------~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~~~nptG~~~~----l~~i~~  192 (384)
T 1bs0_A          130 RLSHASL-LEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQ  192 (384)
T ss_dssp             TTCCHHH-HHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHH
T ss_pred             ccccHHH-HHHHHHcC------------CCEEEeCCCCHHHHHHHHHhcCCCCeEEEEeCCCCCCCCccC----HHHHHH
Confidence            8886433 32222222            223445566899999999865445889999999999999998    999999


Q ss_pred             HHHhcCCEEEEeccccCC--cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCC
Q 017259          157 LCSKYNILMIADEIQSGL--ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGG  230 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~--~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~  230 (374)
                      +|++||++||+||+|+.+  ++.+..+. ..++..+|++  |+||.++  . ++||+++++++.+.+....  ...+.+.
T Consensus       193 l~~~~~~~li~De~~~~~~~~~~~~~~~-~~~~~~~di~~~s~sK~~~--~-~GG~~~~~~~~~~~l~~~~~~~~~~~~~  268 (384)
T 1bs0_A          193 VTQQHNGWLMVDDAHGTGVIGEQGRGSC-WLQKVKPELLVVTFGKGFG--V-SGAAVLCSSTVADYLLQFARHLIYSTSM  268 (384)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCCHH-HHTTCCCSEEEEESSSTTS--S-CCEEEEECHHHHHHHHHHCHHHHSSBCC
T ss_pred             HHHHcCcEEEEECCcccceecCCCCchH-HhcCCCCcEEEeeccchhh--c-cCcEEEeCHHHHHHHHHhchhhhcCCCC
Confidence            999999999999999742  33343322 3344567877  8999997  2 4488989998888776421  2233467


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +++.++++.++++.+.+   +++.++++++++++.+.|+++     ++.. ..+.+.++++.++...   +..++.+.|.
T Consensus       269 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~-~~~~~~~~~~~~~~~~---~~~~l~~~l~  339 (384)
T 1bs0_A          269 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDL-----PFTL-ADSCSAIQPLIVGDNS---RALQLAEKLR  339 (384)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTS-----SCEE-CSCCSSBCCEEEESHH---HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhc-----CCcc-cCCCCCEEEEEeCCHH---HHHHHHHHHH
Confidence            89999999999987752   256667777777777766554     1211 1245777888776422   5788999999


Q ss_pred             HCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          308 ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       308 ~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ++||.++++.       .+++|++++..++++++++++++|+++
T Consensus       340 ~~gi~v~~~~~~~~~~~~~~~Ri~~~~~~~~~~i~~~~~~l~~~  383 (384)
T 1bs0_A          340 QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  383 (384)
T ss_dssp             HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HCCcEEEeecCCCCCCCCceEEEEEcCCCCHHHHHHHHHHHHhh
Confidence            9999998752       378999998888999999999999864

>3e2y_A Kynurenine-oxoglutarate transaminase 3; alpha beta protein, PLP dependent protein, aminotransferase, pyridoxal phosphate, transferase; HET: GLN PMP; 2.26A {Mus musculus} SCOP: c.67.1.0 PDB: 2zjg_A* 3e2f_A* 3e2z_A*

Probab=99.97  E-value=3.3e-29  Score=236.61  Aligned_cols=302  Identities=14%  Similarity=0.148  Sum_probs=203.9

Q ss_pred             HHHHHHHHhcccC--------C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           23 FPVFAERLTSMFG--------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        23 ~~~l~~~l~~~~~--------~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ..++++.++++++        . +++++++|+++|++.+++.+     ..+|     |+|++..|+|+++.......+..
T Consensus        63 ~~~l~~~la~~~~~~~~~~~~~~~~i~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~  132 (410)
T 3e2y_A           63 HPALVKALSCLYGKIYQRQIDPNEEILVAVGAYGSLFNSIQGL-----VDPG-----DEVIIMVPFYDCYEPMVRMAGAV  132 (410)
T ss_dssp             CHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCE
T ss_pred             hHHHHHHHHHHHHHHhCCCCCCCCCEEEeCCcHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhhHHHHHHcCCE
Confidence            4455555555432        3 68999999999999999988     5667     99999999998876555443322


Q ss_pred             ccccccCCCCCCCc---eeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           94 NEAIRGFGPLLPGH---LKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        94 ~~~~~~~~~~~~~~---~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ..... ..+...+.   ....+ .|+++++++++   ++++++++++++|++|.+. +++.+++|.++|++||+++|+||
T Consensus       133 ~~~~~-~~~~~~~g~~~~~~~~~~d~~~l~~~~~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~De  207 (410)
T 3e2y_A          133 PVFIP-LRSKPTDGMKWTSSDWTFDPRELESKFS---SKTKAIILNTPHNPLGKVY-TRQELQVIADLCVKHDTLCISDE  207 (410)
T ss_dssp             EEEEE-CEECCCCSSCCBGGGEECCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             EEEEe-ccccccccccccccCCcCCHHHHHhhcC---CCceEEEEeCCCCCCCcCc-CHHHHHHHHHHHHHcCcEEEEEh
Confidence            11110 00000000   00011 17889988876   5799999999999999877 78889999999999999999999


Q ss_pred             cccCCcccccCc-ccccCC----CCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          170 IQSGLARSGRML-ASDWEE----VRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       170 a~~~~~~~g~~~-~~~~~~----~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +|+++.+.|..+ ......    ....+.|+||.++ +|+ |+||+++++++++.+.......+++.+++++.++.++++
T Consensus       208 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~  286 (410)
T 3e2y_A          208 VYEWLVYTGHTHVKIATLPGMWERTITIGSAGKTFSVTGW-KLGWSIGPAHLIKHLQTVQQNSFYTCATPLQAALAEAFW  286 (410)
T ss_dssp             TTTTCBCTTCCCCCGGGSTTCGGGEEEEEEHHHHSSCGGG-CCEEEECCHHHHHHHHHHHHTTTCCCCHHHHHHHHHHHH
T ss_pred             hhhhcccCCCCCCCHHHcCCccCeEEEEecchhhcCCCCc-eEEEEEECHHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Confidence            999887666422 222221    1123448999999 798 999999999988888765556688889999999998887


Q ss_pred             HH-----hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc--------hhHHHHHHHHH-HC
Q 017259          244 VI-----RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP--------VSAYDICLKMK-ER  309 (374)
Q Consensus       244 ~~-----~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--------~~~~~~~~~l~-~~  309 (374)
                      ..     ..+++.++.++..+..++.+.+....+ ++....+..+.++|+.+.....+        .+..+++++++ ++
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~~  365 (410)
T 3e2y_A          287 IDIKRMDDPECYFNSLPKELEVKRDRMVRLLNSV-GLKPIVPDGGYFIIADVSSLGADLSDMNSDEPYDYKFVKWMTKHK  365 (410)
T ss_dssp             HHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEBCSBSSEEEEECGGGCCCCTTCCSSCCHHHHHHHHHHHHH
T ss_pred             hhhccccchHHHHHHHHHHHHHHHHHHHHHHHHC-CCeecCCCccEEEEEEchhhhcccccccccccCHHHHHHHHHHHc
Confidence            41     112334444444444444444333332 33333344577778777542110        02347888765 66


Q ss_pred             CeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          310 GILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       310 Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ||.+.++.           .+++||++  ..+++++++++++|++
T Consensus       366 gv~v~~g~~f~~~~~~~~~~~~iRis~--~~~~e~l~~~l~~l~~  408 (410)
T 3e2y_A          366 KLTAIPVSAFCDSKSKPHFEKLVRFCF--IKKDSTLDAAEEIFRA  408 (410)
T ss_dssp             SEECEEGGGGSCTTTHHHHTTEEEEEC--CCCHHHHHHHHHHHHT
T ss_pred             CEEEeCchhhCCCCCCCCCCCEEEEEE--cCCHHHHHHHHHHHHh
Confidence            99997742           48999994  4599999999999864

>3hdo_A Histidinol-phosphate aminotransferase; PSI-II, histidinol-phosphate aminotrans structural genomics, protein structure initiative; 1.61A {Geobacter metallireducens gs-15}

Probab=99.97  E-value=2.4e-29  Score=233.61  Aligned_cols=300  Identities=15%  Similarity=0.137  Sum_probs=209.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+++.+.......|+.+...++++++++++|  .+++++|+|+++|++.+++.+     .++|     |+|++..|+
T Consensus        46 ~a~~~~~~~~~~~~~~y~~~~~~~lr~~la~~~g~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~  115 (360)
T 3hdo_A           46 KAILEELGPDGAALRIYPSASSQKLREVAGELYGFDPSWIIMANGSDEVLNNLIRAF-----AAEG-----EEIGYVHPS  115 (360)
T ss_dssp             HHHHHHHTTTCGGGGSCCCSSCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSS
T ss_pred             HHHHHHHhcccchhhcCCCCchHHHHHHHHHHhCcCcceEEEcCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCC
Confidence            3455555443111223445567889999999887  568999999999999999988     5677     999999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      |++....+...+...             ..++.++-..+++.++..  +++++++++++|++|.+.+    +++|.++|+
T Consensus       116 ~~~~~~~~~~~g~~~-------------~~v~~~~~~~~~~l~~~~--~~~~v~i~~p~nptG~~~~----~~~l~~l~~  176 (360)
T 3hdo_A          116 YSYYGTLAEVQGARV-------------RTFGLTGDFRIAGFPERY--EGKVFFLTTPNAPLGPSFP----LEYIDELAR  176 (360)
T ss_dssp             CTHHHHHHHHHTCEE-------------EEECBCTTSSBTTCCSSB--CSSEEEEESSCTTTCCCCC----HHHHHHHHH
T ss_pred             hHHHHHHHHHCCCEE-------------EEeeCCCCCCHHHHHhhc--CCCEEEEeCCCCCCCCCcC----HHHHHHHHH
Confidence            988766555443221             122221100112212212  2457888888999999998    899999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      ++|+++|+||+|+++...+........+....+.|+||.++ +|+ |+||+++++++.+.+....  .+++.++++++++
T Consensus       177 ~~~~~li~De~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~a~  253 (360)
T 3hdo_A          177 RCAGMLVLDETYAEFAESNALELVRRHENVVVTRTLSKSYSLAGM-RIGLAIARPEVIAALDKIR--DHYNLDRLAQAAC  253 (360)
T ss_dssp             HBSSEEEEECTTGGGSSCCCTHHHHHCSSEEEEEESTTTTSCTTS-CCEEEECCHHHHHHHHHHS--CSCCSCHHHHHHH
T ss_pred             HCCCEEEEECChHhhCCcchhHHhccCCCEEEEecchHhhcCCcc-ceeeEeeCHHHHHHHHHhC--CCCCCCHHHHHHH
Confidence            99999999999997632221111122222233558999998 788 9999999999888876532  4577899999999


Q ss_pred             HHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259          239 IASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH  317 (374)
Q Consensus       239 ~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  317 (374)
                      .++++.... ++..++++++.+++.+.|++.     ++. ..++.+.++++.++..    +..++.+.|.++||.++++.
T Consensus       254 ~~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~-----~~~-~~~~~~~~~~~~~~~~----~~~~l~~~l~~~gi~v~~~~  323 (360)
T 3hdo_A          254 VAALRDQAYLSECCRRIRETREWFTTELRSI-----GYD-VIPSQGNYLFATPPDR----DGKRVYDGLYARKVLVRHFS  323 (360)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHHHHHHT-----TCE-ECCCSSSEEEEECTTC----CHHHHHHHHHHTTEECBCCC
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCE-EcCCCccEEEEECCCC----CHHHHHHHHHHCCEEEEECC
Confidence            998874211 234555555666666666544     221 2345677888877643    67899999999999998864


Q ss_pred             ----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 ----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 ----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                          .+++||+++   +++|+++++++|+++.+
T Consensus       324 ~~~~~~~iRis~~---~~~e~~~l~~al~~~~~  353 (360)
T 3hdo_A          324 DPLLAHGMRISIG---TREEMEQTLAALKEIGE  353 (360)
T ss_dssp             STTTTTSEEEECC---CHHHHHHHHHHHHHHHC
T ss_pred             CCCCCCEEEEEcC---CHHHHHHHHHHHHHHhc
Confidence                489999944   89999999999998876

>3get_A Histidinol-phosphate aminotransferase; NP_281508.1, structural genomics, joint center for structural genomics; HET: LLP MSE; 2.01A {Campylobacter jejuni subsp}

Probab=99.97  E-value=4.4e-29  Score=232.21  Aligned_cols=289  Identities=16%  Similarity=0.145  Sum_probs=206.7

Q ss_pred             CCCCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+++++++++++  .+++++++|++++++.+++.+     .++|     |+|++..|+|++....+...+....
T Consensus        62 y~~~~~~~lr~~la~~~~~~~~~v~~~~g~~~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~  131 (365)
T 3get_A           62 YPDDSMIELKSTLAQKYKVQNENIIIGAGSDQVIEFAIHSK-----LNSK-----NAFLQAGVTFAMYEIYAKQCGAKCY  131 (365)
T ss_dssp             CCCTTCHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSSCCTHHHHHHHHHTCEEE
T ss_pred             CCCCChHHHHHHHHHHhCCCcceEEECCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCChHHHHHHHHHcCCEEE
Confidence            444445789999999887  568999999999999999988     5667     9999999999877655544332211


Q ss_pred             ccccCCCC-CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPL-LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~-~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    +. ..+.     .|+++++++++   ++++++++++++|++|.+. +.+.+++|+++| ++|+++|+||+|+++
T Consensus       132 ~v----~~~~~~~-----~d~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~-~~~~~li~De~~~~~  197 (365)
T 3get_A          132 KT----QSITHNL-----DEFKKLYETHK---DEIKLIFLCLPNNPLGECL-DASEATEFIKGV-NEDCLVVIDAAYNEF  197 (365)
T ss_dssp             EC----SSSSCCH-----HHHHHHHHHTT---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHTS-CTTSEEEEECTTHHH
T ss_pred             EE----ecCCCCC-----CCHHHHHHHhC---CCCCEEEEcCCCCCCCCCc-CHHHHHHHHHhC-CCCcEEEEeCccHHH
Confidence            11    11 0111     26788888886   5899999988899999888 566666666666 679999999999976


Q ss_pred             cc--cc-cCc-cccc---CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          175 AR--SG-RML-ASDW---EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       175 ~~--~g-~~~-~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      .+  .+ ... ....   .+....+.|+||.++ +|+ |+||+++++++.+.+...  ..+++.+.+++.++.++++...
T Consensus       198 ~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~  274 (365)
T 3get_A          198 ASFKDSKKHLEPCELIKEFDNVLYLGTFSKLYGLGGL-RIGYGIANANIISAFYKL--RAPFNVSNLALKAAVAAMDDDE  274 (365)
T ss_dssp             HHHHCGGGCCCHHHHHHHCTTEEEEEESSSTTSCTTT-CCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHTCHH
T ss_pred             hcccCCcccccHhHHhccCCCEEEEeecchHhcCcch-heEEEEcCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHH
Confidence            42  22 111 1111   122223448999998 798 999999999988887653  2346789999999888887321


Q ss_pred             h-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC---CCEEE
Q 017259          247 D-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH---DTIVR  322 (374)
Q Consensus       247 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~---~~~lR  322 (374)
                      . ++..++++++.+++.+.|++.     ++. ..++.+.++++.++..    +..++.+.|.++||.++++.   .+++|
T Consensus       275 ~~~~~~~~~~~~~~~l~~~l~~~-----g~~-~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~iR  344 (365)
T 3get_A          275 FTEKTLENNFSQMELYKEFAKKH-----NIK-IIDSYTNFITYFFDEK----NSTDLSEKLLKKGIIIRNLKSYGLNAIR  344 (365)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHT-----TCE-ECCCSSSEEEEECSSS----CHHHHHHHHHTTTEECEECGGGTCSEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhC-----CCE-ECCCCCeEEEEECCCC----CHHHHHHHHHHCCEEEEECccCCCCEEE
Confidence            1 234455555555555555544     221 2345677888887653    47899999999999999876   69999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+++   +++++++++++|+++++
T Consensus       345 is~~---~~~~i~~l~~~l~~~l~  365 (365)
T 3get_A          345 ITIG---TSYENEKFFTEFDKILR  365 (365)
T ss_dssp             EECC---CHHHHHHHHHHHHHHHC
T ss_pred             EEcC---CHHHHHHHHHHHHHHhC
Confidence            9954   89999999999998763

>2dr1_A PH1308 protein, 386AA long hypothetical serine aminotransferase; PLP, structural genomics, NPPSFA; HET: PLP; 1.90A {Pyrococcus horikoshii}

Probab=99.97  E-value=1.5e-28  Score=230.14  Aligned_cols=294  Identities=15%  Similarity=0.126  Sum_probs=215.4

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC--cccccccccCCc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~   94 (374)
                      .+.++++++++++++|.+   ++++++||++|++.+++.+     ..+|     |+|++.+++||+  ....+...+...
T Consensus        52 ~~~~~~~~~~la~~~g~~~~~~v~~~~g~t~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~  121 (386)
T 2dr1_A           52 RKVHMDTVERLREFLEVEKGEVLLVPSSGTGIMEASIRNG-----VSKG-----GKVLVTIIGAFGKRYKEVVESNGRKA  121 (386)
T ss_dssp             HHHHHHHHHHHHHHHTCSSSEEEEESSCHHHHHHHHHHHH-----SCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCChHHHHHHHHHHh-----hcCC-----CeEEEEcCCchhHHHHHHHHHhCCce
Confidence            456778999999988764   5899999999999999988     4567     999999999987  332222222111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+.    ..|+++|++++++. ++++++++++++|++|.+.+    +++|.++|++||++||+||+|+.+
T Consensus       122 ~~v----~~~~~~----~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~~  188 (386)
T 2dr1_A          122 VVL----EYEPGK----AVKPEDLDDALRKN-PDVEAVTITYNETSTGVLNP----LPELAKVAKEHDKLVFVDAVSAMG  188 (386)
T ss_dssp             EEE----ECCTTC----CCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECTTTBT
T ss_pred             EEE----ecCCCC----CCCHHHHHHHHhcC-CCCcEEEEEeecCCcchhCC----HHHHHHHHHHcCCeEEEEcccccc
Confidence            110    100000    13899999999653 46889999999999999988    999999999999999999999843


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC------------------CCCCCCCCCHHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG------------------EHGSTFGGNPLA  234 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~------------------~~~~~~~~~~~~  234 (374)
                      ..   .+...  ...+|++  |+||+++++. ++|++++++++.+.+.+.                  ....+++.+.++
T Consensus       189 ~~---~~~~~--~~~~di~~~s~sK~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  262 (386)
T 2dr1_A          189 GA---DIKFD--KWGLDVVFSSSQKAFGVPP-GLAIGAFSERFLEIAEKMPERGWYFDIPLYVKYLKEKESTPSTPPMPQ  262 (386)
T ss_dssp             TB---CCCTT--TTTCSEEEEETTSTTCCCS-SCEEEEECHHHHHHHTTCTTCCSTTCHHHHHHHHHHHSSCSSCCCHHH
T ss_pred             Cc---ccccc--ccCCcEEEEeccccccCCC-ceEEEEECHHHHHHHhcCCCCceEEeHHHHHHhhccCCCCCCCCCHHH
Confidence            21   11222  2345666  5569999776 789999999888776431                  123456778899


Q ss_pred             HHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          235 SAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       235 ~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      ++++.++++.+.+.    ++.++++++.+++.+.|++..  +. .... ....+.++++.++...   +..++.+.|.++
T Consensus       263 ~~a~~~~l~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~  336 (386)
T 2dr1_A          263 VFGINVALRIIEKMGGKEKWLEMYEKRAKMVREGVREIG--LD-ILAEPGHESPTITAVLTPPGI---KGDEVYEAMRKR  336 (386)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHTT--CC-BSSCTTCBCSSEEEEECCTTC---CHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHcC--Ce-eCcCccccCCceEEEEcCCCC---CHHHHHHHHHHC
Confidence            99999999876543    567778888888888887752  21 2111 0114677888776433   678999999999


Q ss_pred             CeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          310 GILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       310 Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||.++++.    .+++||+++...+++++++++++|+++++ ++
T Consensus       337 gi~v~~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~  379 (386)
T 2dr1_A          337 GFELAKGYGSVKEKTFRIGHMGYMKFEDIQEMLDNLREVIN-EL  379 (386)
T ss_dssp             TEECEECCGGGTTTEEEEECCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred             CeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hc
Confidence            99998863    57999998888899999999999999987 54

>2e7j_A SEP-tRNA:Cys-tRNA synthase; seven-stranded BETE-strand, lyase, structural genomics; HET: PLP; 2.40A {Archaeoglobus fulgidus} SCOP: c.67.1.9 PDB: 2e7i_A*

Probab=99.97  E-value=8.5e-30  Score=237.33  Aligned_cols=289  Identities=14%  Similarity=0.153  Sum_probs=215.2

Q ss_pred             CCCCCcHHHHHHH-HhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           17 AFYNDKFPVFAER-LTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        17 ~~~~~~~~~l~~~-l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .++.+...+++++ ++++++.+++++++|+++|++.+++++     ..+|     |+|++.+++|++........+..  
T Consensus        49 ~~~~~~~~~l~~~~la~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~--  116 (371)
T 2e7j_A           49 EIKTPPIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSL-----AKKD-----AWVVMDENCHYSSYVAAERAGLN--  116 (371)
T ss_dssp             ----CCHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHTTCE--
T ss_pred             hhHHHHHHHHHHHHHHHHcCCCEEEEeCChHHHHHHHHHHH-----hCCC-----CEEEEccCcchHHHHHHHHcCCe--
Confidence            3567889999999 999998789999999999999999988     4566     99999999998876654332211  


Q ss_pred             ccccCCCCCCCceecc--CC-----CHHHHHHHHHhcC--CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259           96 AIRGFGPLLPGHLKVD--FG-----DITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI  166 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~--~~-----d~~~le~~l~~~~--~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li  166 (374)
                                 +..++  .+     |+++|+++++++.  ++++++++++++|++|.+.+    +++|.++|++||++||
T Consensus       117 -----------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~li  181 (371)
T 2e7j_A          117 -----------IALVPKTDYPDYAITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLL  181 (371)
T ss_dssp             -----------EEEECCCCTTTCCCCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEE
T ss_pred             -----------EEEeecccCCCCCcCHHHHHHHHHhhcccCCeEEEEEECCCCCCcccCC----HHHHHHHHHHcCCeEE
Confidence                       22222  22     7999999998542  47899999999999999998    9999999999999999


Q ss_pred             EeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhh-cCCCCC--CC-----CCCCCHHHHH
Q 017259          167 ADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLC-IQPGEH--GS-----TFGGNPLASA  236 (374)
Q Consensus       167 ~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~-~~~~~~--~~-----~~~~~~~~~~  236 (374)
                      +||+|+.+.. +  +....+  .+|++  |+||+++++. |+|++++++++.+. +.....  ..     ++..+...++
T Consensus       182 ~D~a~~~~~~-~--~~~~~~--~~di~~~s~sK~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (371)
T 2e7j_A          182 VNGAYAIGRM-P--VSLKEI--GADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATII  255 (371)
T ss_dssp             EECTTTBTTB-C--CCHHHH--TCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHH
T ss_pred             EECccccCCC-C--CChhhc--CCCEEEecCCcCCCCCC-CcEEEEEechhhhhhccccccCcccccccccCCcCHHHHH
Confidence            9999985421 1  122222  34555  6789999888 99999999888777 665433  22     4556777777


Q ss_pred             HHHHHHHHHhhhcHHHHH--HHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          237 VAIASLDVIRDEKLAERS--AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       237 aa~~al~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      ++.++++.+.. ++.+++  +++.+++.+.|+++  .+ .........+.++++.++      +..++.+.|.++||.+.
T Consensus       256 a~~~~l~~~~~-~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gi~~~  325 (371)
T 2e7j_A          256 TLMASFPHVRE-RIKRWDEEVEKARRFAAEMEKL--GI-KQLGDNPHNHDLMFFHAE------VLYEISKKAKGGRFFLY  325 (371)
T ss_dssp             HHHHHHHHHHH-HGGGHHHHHHHHHHHHHHHHHT--TC-EEESSSSCCSSEEEEECH------HHHHHHHHSSSGGGHHH
T ss_pred             HHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHc--Cc-EEecCCCccCceEEEECC------CHHHHHHHHHHCCEEEE
Confidence            77788887655 566777  78888888888765  22 111111113677888775      36789999999999987


Q ss_pred             c--------C-CCCEEE-EecCCC-CCHHHHHHHHHHHHHHHhccC
Q 017259          315 P--------T-HDTIVR-LTPPLS-ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       315 ~--------~-~~~~lR-i~~~~~-~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +        + ..+++| ++++.. .+++++++++++|+++++ ++
T Consensus       326 ~~~~~~~~~g~~~~~iRii~~~~~~~~~~~i~~~~~~l~~~~~-~~  370 (371)
T 2e7j_A          326 RELKSRKIHGIKPGLTRYFKLSTYGLSDEEVDYVLNAFKEIIE-KY  370 (371)
T ss_dssp             HHHHHTTEECSCTTCCSEEEEECTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             eccccccccCCCCCceEEEEeeccCCCHHHHHHHHHHHHHHHH-hc
Confidence            6        1 157899 998877 899999999999999987 54

>1fg7_A Histidinol phosphate aminotransferase; HISC, histidine biosynthesis, pyridoxal PH montreal-kingston bacterial structural genomics initiative; HET: PMP; 1.50A {Escherichia coli} SCOP: c.67.1.1 PDB: 1fg3_A* 1gew_A* 1gex_A* 1gey_A* 1iji_A*

Probab=99.96  E-value=1.1e-28  Score=228.78  Aligned_cols=287  Identities=15%  Similarity=0.154  Sum_probs=203.5

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++++|++++++.+++++.     ++|    +|+|++..|+|+++...+...+....
T Consensus        55 Y~~~~~~~lr~~la~~~~~~~~~v~~~~G~~~ai~~~~~~~~-----~~g----~d~Vl~~~p~~~~~~~~~~~~g~~~~  125 (356)
T 1fg7_A           55 YPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAFC-----EPG----KDAILYCPPTYGMYSVSAETIGVECR  125 (356)
T ss_dssp             CCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHHC-----CTT----TCEEEECSSSCTHHHHHHHHHTCEEE
T ss_pred             CCCccHHHHHHHHHHHhCCChHHEEEcCCHHHHHHHHHHHHh-----CCC----CCEEEEeCCChHHHHHHHHHcCCEEE
Confidence            4455578899999998865  589999999999999999883     233    37999999999987766554432211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      .    .+...+..    .|+++++++++    +++++++++++|++|.+. +.+++++|.++|+ +|+++|+||+|++++
T Consensus       126 ~----v~~~~~~~----~d~~~l~~~i~----~~~~v~l~~p~nptG~~~-~~~~l~~l~~~~~-~~~~li~De~~~~~~  191 (356)
T 1fg7_A          126 T----VPTLDNWQ----LDLQGISDKLD----GVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIEFC  191 (356)
T ss_dssp             E----CCCCTTSC----CCHHHHHTSCT----TEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGGGS
T ss_pred             E----eeCCCCCC----CCHHHHHHHhc----CCCEEEEeCCCCCCCCCC-CHHHHHHHHHhCC-CCCEEEEEccchhhc
Confidence            1    11111100    27888877764    688888888899999877 7899999999999 999999999999875


Q ss_pred             ccccCccc-ccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh---hhcH
Q 017259          176 RSGRMLAS-DWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR---DEKL  250 (374)
Q Consensus       176 ~~g~~~~~-~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~---~~~~  250 (374)
                      ........ ..++....+.|+||.++ +|+ |+||+++++++.+.+...  ..+++.+++++.++.++++...   -++.
T Consensus       192 ~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  268 (356)
T 1fg7_A          192 PQASLAGWLAEYPHLAILRTLSKAFALAGL-RCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQGIVAMRER  268 (356)
T ss_dssp             GGGCSGGGTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHHHHHH
T ss_pred             CCCcHHHHHhhCCCEEEEecchHhhcCchh-hhEEEEeCHHHHHHHHHh--cCCCCCCHHHHHHHHHHhcCccHHHHHHH
Confidence            32121121 11122223459999998 798 999999999988887643  3355789999998888886532   1233


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-CC----CCEEEEec
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-TH----DTIVRLTP  325 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-~~----~~~lRi~~  325 (374)
                      .++++++++++.+.|++    ++++....++.++++++.++      +..++.+.|.++||.+++ +.    .+++||++
T Consensus       269 ~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~gI~v~~~g~~~~~~~~iRis~  338 (356)
T 1fg7_A          269 VAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFK------ASSAVFKSLWDQGIILRDQNKQPSLSGCLRITV  338 (356)
T ss_dssp             HHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEET------THHHHHHHHHHTTEECEECTTSTTCTTEEEEEC
T ss_pred             HHHHHHHHHHHHHHHHh----CCCceEECCCCCeEEEEECC------CHHHHHHHHHHCCEEEEECCCCCCCCCeEEEEe
Confidence            44555555555555554    32222223446788888776      357899999999999998 42    46999995


Q ss_pred             CCCCCHHHHHHHHHHHHH
Q 017259          326 PLSISSNELQEGSKALHD  343 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l~~  343 (374)
                      +   +++++++++++|++
T Consensus       339 ~---~~~e~~~~~~~l~~  353 (356)
T 1fg7_A          339 G---TREESQRVIDALRA  353 (356)
T ss_dssp             C---CHHHHHHHHHHHHT
T ss_pred             C---CHHHHHHHHHHHHh
Confidence            4   68999999998865

>3rq1_A Aminotransferase class I and II; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, alpha-beta structure, cytosol; HET: AKG GOL; 2.20A {Veillonella parvula}

Probab=99.96  E-value=4.8e-29  Score=236.23  Aligned_cols=295  Identities=12%  Similarity=0.110  Sum_probs=206.4

Q ss_pred             cHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           22 KFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +++.+++++....+.+   ++++|+||++|+..+++.+     .++|     |+|++..|+|+++...+...+...... 
T Consensus        85 lr~~ia~~~~~~~~~~~~~~i~~t~g~~~al~~~~~~l-----~~~g-----d~Vl~~~p~~~~~~~~~~~~g~~~~~v-  153 (418)
T 3rq1_A           85 FLCAAEKECFGNFRPEGHIRSIATAGGTGGIHHLIHNY-----TEPG-----DEVLTADWYWGAYRVICSDTGRTLVTY-  153 (418)
T ss_dssp             HHHHHHHHHHGGGCCSSEEEEEEESHHHHHHHHHHHHH-----SCTT-----CEEEEESSCCTHHHHHHHHTTCEEEEE-
T ss_pred             HHHHHHHHHhcccCccccccEEECCchHHHHHHHHHHh-----cCCC-----CEEEECCCCchhHHHHHHHcCCEEEEE-
Confidence            3444555554444677   9999999999999999988     5677     999999999988766555444322211 


Q ss_pred             cCCCCC-CCceeccCCCHHHHHHHHHhc--CCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHH------hcCCEEEEe
Q 017259           99 GFGPLL-PGHLKVDFGDITALEKIFKES--GDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCS------KYNILMIAD  168 (374)
Q Consensus        99 ~~~~~~-~~~~~~~~~d~~~le~~l~~~--~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~------~~~i~li~D  168 (374)
                         +.. .+.    ..|+++++++++++  ++..++++++++ +|++|.+. +.+.+++|+++|+      +||++||+|
T Consensus       154 ---~~~~~~~----~~d~~~l~~~l~~~~~~~~~~~vi~~~p~~NPtG~~~-~~~~l~~l~~~~~~~~~~~~~~~~li~D  225 (418)
T 3rq1_A          154 ---SLFDEHN----NFNHEAFQNRVNELAAKQTNVVVIFNTPGNNPTGYSI-EDKDWDSILNFLKDLVAIGRNNVIIGID  225 (418)
T ss_dssp             ---CSBCTTS----SBCHHHHHHHHHHHHHHCSEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHHHTSSCEEEEEEE
T ss_pred             ---eeeCCCC----CcCHHHHHHHHHHhhccCCCEEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHhhhccCCCeEEEEe
Confidence               110 010    11799999998752  123457777777 88899777 7888999999999      899999999


Q ss_pred             ccccCCccccc---CcccccCCCCCc---EE--Eeccccc-CCccchhhhee---CHHHHhhcCCCCCC----CCCCCCH
Q 017259          169 EIQSGLARSGR---MLASDWEEVRPD---MV--ILGKALG-GGVIPVSAVLA---DKEVMLCIQPGEHG----STFGGNP  232 (374)
Q Consensus       169 ea~~~~~~~g~---~~~~~~~~~~~d---~~--s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~~~~----~~~~~~~  232 (374)
                      |+|.++++.+.   .+.....+..++   ++  ||||.++ +|+ |+||+++   ++++.+.+......    .....+.
T Consensus       226 e~y~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  304 (418)
T 3rq1_A          226 VAYLDYSGEKDEVRAFFNKFSHLPKEILTCVCYSLSKGFTMYGQ-RVGAMIGISDDEEIADEFFEVNKSTSRATWSNICR  304 (418)
T ss_dssp             CTTGGGSSCHHHHHGGGGGGTTCCTTEEEEEEEESTTTTTCCSS-CCEEEEEEESSHHHHHHHHHHHHHHHHHHTSSCCH
T ss_pred             cccccccCChHHHHHHHHHHHhcCCCceEEEEEeCCCCCcCcCC-cceEEEEEeCCHHHHHHHHHHHHHHHhhccCCCch
Confidence            99998876653   122223344455   22  8999998 699 9999998   88888877643211    1235688


Q ss_pred             HHHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          233 LASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       233 ~~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      +++.++.++++...      .  .++.++++++.+++.+.|++++  ++ +.  ....+.++|+.++      +..++++
T Consensus       305 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~-~~--~~~~~~~~~~~~~------~~~~~~~  373 (418)
T 3rq1_A          305 PAMRTMANIVADPAKFKEYEAERNCYYQLIRDRADIFKQEAAQVG--LP-ML--PYRGGFFITIPTD------SANAICE  373 (418)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--CC-CC--CCCSSSEEEEECT------THHHHHH
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CC-CC--CCCceEEEEcCCC------CHHHHHH
Confidence            88888877764321      1  1345566667777777776652  21 11  1223445555443      5678999


Q ss_pred             HHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          305 KMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .|.++||.++++ ++++||++. ..+++++++++++|+++++ ++.
T Consensus       374 ~l~~~gi~v~~g-~~~iRis~~-~~~~~~i~~~~~~l~~~l~-~~~  416 (418)
T 3rq1_A          374 ELKKEHIYVIAL-ANGIRIAAC-GIPKCQMTGLAEKIYNAMK-SLG  416 (418)
T ss_dssp             HHHHTTEECEEC-SSEEEEEGG-GSCHHHHTTHHHHHHHHHH-HTT
T ss_pred             HHHhCCEEEecC-CCCeEEEEe-cCCHHHHHHHHHHHHHHHH-HHh
Confidence            999999999998 678999955 4699999999999999998 664

>3qgu_A LL-diaminopimelate aminotransferase; L-lysine, pyridoxal-5' phosphate, chamydomonas reinhardtii; HET: GOL; 1.55A {Chlamydomonas reinhardtii}

Probab=99.96  E-value=2.2e-29  Score=240.88  Aligned_cols=317  Identities=12%  Similarity=0.102  Sum_probs=215.0

Q ss_pred             hHHHHHHHhcc--ccCcCC-CCCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE
Q 017259            2 KALQEQAEKLT--LSSRAF-YNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI   72 (374)
Q Consensus         2 ~a~~~~~~~~~--~~~~~~-~~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~   72 (374)
                      +|+.+++.+..  .....| +.+...++++.+++++      ..+++++++|+++++..+ ..+     ..+|     |+
T Consensus        89 ~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~ia~~~~~g~~~~~~~i~~t~G~~~al~~~-~~l-----~~~g-----d~  157 (449)
T 3qgu_A           89 DAMAKAAAGLATREGYSGYGAEQGQGALREAVASTFYGHAGRAADEIFISDGSKCDIARI-QMM-----FGSK-----PT  157 (449)
T ss_dssp             HHHHHHHHGGGGSCCCCCSTTTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-----HCSS-----SC
T ss_pred             HHHHHHHHhhccccCCCCCCCCCCcHHHHHHHHHHHHcCCCCCHHHEEEccCHHHHHHHH-HHH-----hCCC-----CE
Confidence            46666666432  111122 3355778888888876      456899999999999988 555     3566     99


Q ss_pred             EEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           73 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        73 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      |++.+|+|+++...+...+..+.+...   ...++..+++++.+.+...+.+. ++++++++++++|++|.+. +.+.++
T Consensus       158 Vl~~~p~~~~~~~~~~~~g~~g~~~~~---~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~l~~p~NPtG~~~-~~~~l~  232 (449)
T 3qgu_A          158 VAVQDPSYPVYVDTSVMMGMTGDHNGT---GFDGIEYMVCNPDNHFFPDLSKA-KRTDIIFFCSPNNPTGAAA-TRAQLT  232 (449)
T ss_dssp             EEEEESCCTHHHHHHHHHTCSCCBCSS---SBTTEEEEECCGGGTTCCCGGGC-CCCSEEEEESSCTTTCCCC-CHHHHH
T ss_pred             EEEcCCCChhHHHHHHHcCCccccccc---ccceeEEEecccccCCcCChhHc-CCCCEEEEeCCCCCCCCcC-CHHHHH
Confidence            999999999887666555433111100   00123344443221111112222 4678888888888899877 899999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccC-cccccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhh--------
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRM-LASDWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLC--------  218 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~-~~~~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~--------  218 (374)
                      +|+++|++||++||+||+|+++.+.+.. .....+    +....+.|+||.++ +|+ |+||+++++++++.        
T Consensus       233 ~l~~l~~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~  311 (449)
T 3qgu_A          233 ELVNFARKNGSILVYDAAYALYISNPDCPKTIYEIPGADEVAIETCSFSKYAGFTGV-RLGWTVVPKALKYANGEPVHAD  311 (449)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECSGGGTCTTC-CCEEEECCTTCBCTTSCBHHHH
T ss_pred             HHHHHHHHCCcEEEEEcchHhhhcCCCCCCCHhhccCCCCcEEEEecchhhcCCccc-eeEEEecCHHHHhhhhhhHHHH
Confidence            9999999999999999999987665532 122222    12233569999998 899 99999998877652        


Q ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          219 IQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                      +........++.+++++.++.++++....   +++.++++++.+++.+.|++.     ++.......+.++|+.++ .. 
T Consensus       312 ~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~-~~-  384 (449)
T 3qgu_A          312 WNRVMTTCFNGASNIVQAGGLACLQPEGLKEMNAMIKFYKENAQILKTTFTEM-----GFSVYGGDDAPYIWVGFP-GK-  384 (449)
T ss_dssp             HHHHHHHSCCCCCHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEESSSSSEEEEECT-TS-
T ss_pred             HHHHhhcccCCCCHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHC-----CCeeeCCCCeeEEEEECC-CC-
Confidence            22112233447799999998888765211   245666677777777777654     222212224778888877 32 


Q ss_pred             chhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 PVSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ~~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        +..++++.|+++ ||.+.++      +.+++||+  +..+++++++++++|+++++
T Consensus       385 --~~~~~~~~l~~~~gI~v~pg~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~  438 (449)
T 3qgu_A          385 --PSWDVFAEILERCNIVTTPGSGYGPAGEGFVRAS--AFGSRENILEAVRRFKEAYG  438 (449)
T ss_dssp             --CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHC
T ss_pred             --CHHHHHHHHHHHCCEEEecchHhCCCCCCeEEEE--ecCCHHHHHHHHHHHHHHHH
Confidence              678899999876 9999875      25899999  55699999999999999987

>2gb3_A Aspartate aminotransferase; TM1698, structural genomics, PSI structure initiative, joint center for structural genomics; HET: LLP; 2.50A {Thermotoga maritima} SCOP: c.67.1.1

Probab=99.96  E-value=2e-29  Score=238.17  Aligned_cols=286  Identities=14%  Similarity=0.162  Sum_probs=204.7

Q ss_pred             HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++        ..+++++|+||++|++.+++++     .++|     |+|++.+|+|++....+...+.. 
T Consensus        81 ~~~l~~~la~~~~~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~-  149 (409)
T 2gb3_A           81 IWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-----ANPG-----DEILVLEPFYANYNAFAKIAGVK-  149 (409)
T ss_dssp             CHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHHHHHTCE-
T ss_pred             cHHHHHHHHHHHHHHhCCCCCHHHEEEeCCHHHHHHHHHHHh-----CCCC-----CEEEEcCCCchhHHHHHHHcCCE-
Confidence            455666655543        2368999999999999999988     4567     99999999998876554433321 


Q ss_pred             cccccCCCCCCCceeccCC-----C-HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           95 EAIRGFGPLLPGHLKVDFG-----D-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~-----d-~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                                  +..++.+     + +++|+++++   ++++++++++++|++|.+. +.+.+++|.++|++||++||+|
T Consensus       150 ------------~~~v~~~~~~~~~~~~~l~~~l~---~~~~~v~~~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~D  213 (409)
T 2gb3_A          150 ------------LIPVTRRMEEGFAIPQNLESFIN---ERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVD  213 (409)
T ss_dssp             ------------EEEEECCGGGTSCCCTTGGGGCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             ------------EEEeccCCCCCCccHHHHHHhhC---cCCeEEEECCCCCCCCCCc-CHHHHHHHHHHHHHcCCEEEEE
Confidence                        1112211     1 566666665   4789999988888899876 7899999999999999999999


Q ss_pred             ccccCCcccccCcccccCCC-CCcEE--Eeccccc-CCccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEV-RPDMV--ILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~-~~d~~--s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      |+|+++.+.+..... ..+. ..+++  |+||.++ +|+ |+||+++++ ++.+.+.......+ +.+++++.++.++++
T Consensus       214 ea~~~~~~~~~~~~~-~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~l~~~l~~~~~~~~-~~~~~~~~a~~~~l~  290 (409)
T 2gb3_A          214 EVYSEIVFRGEFASA-LSIESDKVVVIDSVSKKFSACGA-RVGCLITRNEELISHAMKLAQGRL-APPLLEQIGSVGLLN  290 (409)
T ss_dssp             CTTTTCBCSSCCCCG-GGSCCTTEEEEEESTTTTTCGGG-CCEEEECSCHHHHHHHHHHHHHSC-CCCHHHHHHHHHHHT
T ss_pred             CcccccccCCCCCCc-cccCCCCEEEEecchhccCCccc-eEEEEEECcHHHHHHHHHHHhccC-CCCHHHHHHHHHHHh
Confidence            999987655533232 1122 23544  8899998 788 999999988 88887765333334 778899988888885


Q ss_pred             HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC------CeEecc
Q 017259          244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER------GILAKP  315 (374)
Q Consensus       244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~  315 (374)
                      ....  +++.++++++.+++.+.|++.  .+ ... ..+..+.++|+.++. .   +..++.+.|.++      ||.+.+
T Consensus       291 ~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~-~~~~~~~~~~~~~~~-~---~~~~l~~~l~~~~~~~~~gi~v~~  362 (409)
T 2gb3_A          291 LDDSFFDFVRETYRERVETVLKKLEEH--GL-KRF-TKPSGAFYITAELPV-E---DAEEFARWMLTDFNMDGETTMVAP  362 (409)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHT--TC-CCB-CCCSBSSEEEEECSS-S---CHHHHHHHHHHSCCBTTEEEECEE
T ss_pred             ccHHHHHHHHHHHHHHHHHHHHHHHHc--Cc-eee-eCCCeeEEEEEEeCC-C---CHHHHHHHHHhccccccCcEEEeC
Confidence            3211  244566666677777766654  12 120 122345667767762 2   578899999987      999987


Q ss_pred             C---------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 T---------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~---------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +         ..+++|++++  .+++++++++++|+++++ ++
T Consensus       363 g~~f~~~~~~~~~~iRis~~--~~~e~i~~~~~~l~~~l~-~~  402 (409)
T 2gb3_A          363 LRGFYLTPGLGKKEIRIACV--LEKDLLSRAIDVLMEGLK-MF  402 (409)
T ss_dssp             GGGGCSSTTTTSSEEEEECC--SCHHHHHHHHHHHHHHHH-HH
T ss_pred             chHhCCCCCCCCCEEEEEeC--CCHHHHHHHHHHHHHHHH-Hh
Confidence            4         2579999977  899999999999999998 65

>1bw0_A TAT, protein (tyrosine aminotransferase); tyrosine catabolism, pyridoxal-5'-phosphate, PLP; HET: LLP; 2.50A {Trypanosoma cruzi} SCOP: c.67.1.1

Probab=99.96  E-value=5.2e-29  Score=235.80  Aligned_cols=299  Identities=13%  Similarity=0.109  Sum_probs=200.2

Q ss_pred             cHHHHHHHHhcccC--------------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc
Q 017259           22 KFPVFAERLTSMFG--------------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA   87 (374)
Q Consensus        22 ~~~~l~~~l~~~~~--------------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~   87 (374)
                      ...++++.++++++              .+++++++|+++|++.+++++     ..+|     |+|++..|+|++....+
T Consensus        76 ~~~~lr~~la~~~~~~~~~~~~~~~~~~~~~v~~~~g~~~al~~~~~~l-----~~~g-----d~vl~~~p~y~~~~~~~  145 (416)
T 1bw0_A           76 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-----CDAG-----DYALVPQPGFPHYETVC  145 (416)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHhhhcccccCCCCCCcceEEEeCChHHHHHHHHHHh-----CCCC-----CEEEEcCCCcHhHHHHH
Confidence            45566666665544              568999999999999999988     5567     99999999999876554


Q ss_pred             ccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259           88 ISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI  166 (374)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li  166 (374)
                      ...+......    +...+   ..+ .|+++|+++++   ++++++++++++|++|.+. +++++++|.++|++||++||
T Consensus       146 ~~~g~~~~~v----~~~~~---~~~~~d~~~l~~~l~---~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li  214 (416)
T 1bw0_A          146 KAYGIGMHFY----NCRPE---NDWEADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLF  214 (416)
T ss_dssp             HHTTCEEEEE----EEEGG---GTTEECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEE
T ss_pred             HHcCcEEEEe----ecCcc---cCCCCCHHHHHHHhc---cCCeEEEEeCCCCCCCccc-CHHHHHHHHHHHHHcCCEEE
Confidence            4333211110    00000   001 27899998886   4677888877888888776 79999999999999999999


Q ss_pred             EeccccCCccccc----Cc-ccccCCCCCc---EEEeccccc-CCccchhhheeCHH--HHhhcCCC---CCCCCCCCCH
Q 017259          167 ADEIQSGLARSGR----ML-ASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKE--VMLCIQPG---EHGSTFGGNP  232 (374)
Q Consensus       167 ~Dea~~~~~~~g~----~~-~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~--~~~~~~~~---~~~~~~~~~~  232 (374)
                      +||+|+++.+.|.    .+ ....+....+   +.|+||.++ +|+ |+||++++++  +++.+...   ....+++.++
T Consensus       215 ~De~~~~~~~~g~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (416)
T 1bw0_A          215 SDEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRVGMLVCGPCT  293 (416)
T ss_dssp             EECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHHHHHHTCSCH
T ss_pred             EEccccccccCCCCCCCCccCHHHccCCCcEEEEecchhhCCCCCc-eEEEEEeeCchhhHHHHHHHHHHHhccccCCCc
Confidence            9999998765554    21 2222222222   338899986 688 9999887653  33333210   0113567889


Q ss_pred             HHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHH
Q 017259          233 LASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMK  307 (374)
Q Consensus       233 ~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~  307 (374)
                      ++++++.++++....   ++..++++++.+++.+.|++    +|++....+..+.++|+.++....  ..+..++++.|+
T Consensus       294 ~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  369 (416)
T 1bw0_A          294 VVQAALGEALLNTPQEHLDQIVAKIEESAMYLYNHIGE----CIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLL  369 (416)
T ss_dssp             HHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHh----CCCCcccCCCeeEEEEEeCCHHHcCCCCCHHHHHHHHH
Confidence            999999888874322   13344455555555554443    333222122346777877753100  015678999885


Q ss_pred             -HCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 -ERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 -~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       ++||.++++.    ++++||++  ..+++++++++++|+++++ +.
T Consensus       370 ~~~gi~v~~g~~f~~~~~iRis~--~~~~e~l~~~l~~l~~~l~-~~  413 (416)
T 1bw0_A          370 EEENVQVLPGTIFHAPGFTRLTT--TRPVEVYREAVERIKAFCQ-RH  413 (416)
T ss_dssp             HHHCEECEEGGGGTCTTEEEEEC--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHCCEEEecccccCCCCeEEEEe--cCCHHHHHHHHHHHHHHHH-Hh
Confidence             7899998853    58999996  4689999999999999987 54

>3if2_A Aminotransferase; YP_265399.1, structura genomics, joint center for structural genomics, JCSG, prote structure initiative, PSI-2; HET: PLP; 2.50A {Psychrobacter arcticus 273-4}

Probab=99.96  E-value=7.4e-29  Score=236.82  Aligned_cols=302  Identities=15%  Similarity=0.176  Sum_probs=205.0

Q ss_pred             CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCcc--------------EEEEe-c
Q 017259           21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA--------------IIVSC-C   77 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~--------------~vi~~-~   77 (374)
                      ....++++.+++++        ..+++++|+|+++|++.+++++     ..+|     |              +|++. .
T Consensus        83 ~g~~~lr~~ia~~l~~~~g~~~~~~~i~~t~G~t~al~~~~~~l-----~~~g-----d~~~~~~~~~~g~~~~vi~~~~  152 (444)
T 3if2_A           83 QGDSAFIDALVGFFNRHYDWNLTSENIALTNGSQNAFFYLFNLF-----GGAF-----VNEHSQDKESKSVDKSILLPLT  152 (444)
T ss_dssp             TCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHS-----SEEE-----ECC-------CEEEEEEEESSS
T ss_pred             CCCHHHHHHHHHHHHhhcCCCCCHHHEEEecCcHHHHHHHHHHH-----hCCC-----ccccccccccccccceEEEeCC
Confidence            33556666666654        4579999999999999999988     4555     4              67765 8


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceecc----------CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCC
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD----------FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPP  147 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~  147 (374)
                      |+|+++............       ....+..++          .-|+++|++++++..++++++++++++|++|.+. +
T Consensus       153 p~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~g~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~nptG~~~-~  224 (444)
T 3if2_A          153 PEYIGYSDVHVEGQHFAA-------VLPHIDEVTHDGEEGFFKYRVDFEALENLPALKEGRIGAICCSRPTNPTGNVL-T  224 (444)
T ss_dssp             SCCGGGTTCCSSSCCEEE-------CCCEEEEEEETTEEEEEEEECCHHHHHTCHHHHTTCEEEEEEESSCTTTCCCC-C
T ss_pred             CCccchhhcccccchhhc-------cCceEEecccccccCccccCCCHHHHHHHHHhcCCCceEEEeCCCCCCCCCcC-C
Confidence            999887654321100000       001111111          1279999988543236799999988889999877 7


Q ss_pred             hhHHHHHHHHHHhcCCEEEEeccccCCcccccCcc---cccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          148 DGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA---SDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       148 ~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~---~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .+.+++|.++|++||++||+||+|+.+. .+..+.   ....+....+.|+||...+|+ |+||+++++++.+.+.....
T Consensus       225 ~~~l~~i~~~a~~~~~~li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~l~~~~~~~~~  302 (444)
T 3if2_A          225 DEEMAHLAEIAKRYDIPLIIDNAYGMPF-PNIIYSDAHLNWDNNTILCFSLSKIGLPGM-RTGIIVADAKVIEAVSAMNA  302 (444)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESTTTTCGGG-CCEEEECCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCEEEEECCCCCcc-cccccccccccCCCCEEEEechhhccCCCC-ceEEEEECHHHHHHHHHHHH
Confidence            8899999999999999999999998431 111100   011222334569999866788 99999999999888876545


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchh
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDE-----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVS  298 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~  298 (374)
                      ..+++.+++++.++.+.++.....     ...++++++.+.+.+.|.+....+ ++....+..+.++|+.++. ..   +
T Consensus       303 ~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~~---~  378 (444)
T 3if2_A          303 VVNLAPTRFGAAIATPLVANDRIKQLSDNEIKPFYQKQATLAVKLLKQALGDY-PLMIHKPEGAIFLWLWFKDLPI---S  378 (444)
T ss_dssp             HHHSSCCCHHHHHHHHHHHTSHHHHHHHHTHHHHHHHHHHHHHHHHHHHSSSS-SEEEECCCBSSEEEEEETTCSS---C
T ss_pred             hccCCCChHHHHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceEecCCccEEEEEEcCCCCC---C
Confidence            556777888888888777642211     134445555555555555432111 1122223457788888875 33   6


Q ss_pred             HHHHHHHHHHCCeEeccCC--------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          299 AYDICLKMKERGILAKPTH--------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       299 ~~~~~~~l~~~Gi~v~~~~--------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..++.+.|.++||.++++.              .+++||+++.  +++++++++++|+++++ ++
T Consensus       379 ~~~l~~~l~~~gi~v~~g~~~~~~~~~~~~~~~~~~iRis~~~--~~e~i~~~l~~l~~~~~-~~  440 (444)
T 3if2_A          379 TLDLYERLKAKGTLIVPSEYFFPGVDVSDYQHAHECIRMSIAA--DEQTLIDGIKVIGEVVR-EL  440 (444)
T ss_dssp             HHHHHHHHHHTTEECEEGGGSCTTCCCTTCSGGGSEEEEESSS--CHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHCCeEEecchhhcCCCCCcccccCCCeEEEEEeC--CHHHHHHHHHHHHHHHH-HH
Confidence            7889999999999998742              1589999775  99999999999999987 55

>1lc5_A COBD, L-threonine-O-3-phosphate decarboxylase; PLP-dependent decarboxylase cobalamin, lyase; 1.46A {Salmonella enterica} SCOP: c.67.1.1 PDB: 1lc7_A* 1lc8_A* 1lkc_A*

Probab=99.96  E-value=1.1e-28  Score=229.53  Aligned_cols=292  Identities=15%  Similarity=0.154  Sum_probs=198.4

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...++++.++++++.  +++++++|++++++.+++++       +|     |+|++..|+||+....+...+....
T Consensus        56 y~~~~~~~l~~~la~~~~~~~~~v~~~~g~~~al~~~~~~~-------~g-----d~vl~~~p~y~~~~~~~~~~g~~~~  123 (364)
T 1lc5_A           56 YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL-------KP-----RRAMIVTPGFAEYGRALAQSGCEIR  123 (364)
T ss_dssp             CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-------CC-----SEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred             CCCCCHHHHHHHHHHHHCcCHHHEEECCCHHHHHHHHHHHc-------CC-----CeEEEeCCCcHHHHHHHHHcCCeEE
Confidence            3445678899999998865  58999999999999999877       24     8999999999987665544332211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +.... .  .++.++++.+.+   .+++++++++.++|++|.+. +.+++++|.++|++||+++|+||+|+++.
T Consensus       124 ~v----~~~~~-~--~~~~l~~~~~~~---~~~~~~v~i~~p~nptG~~~-~~~~l~~i~~~~~~~~~~li~De~~~~~~  192 (364)
T 1lc5_A          124 RW----SLREA-D--GWQLTDAILEAL---TPDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFI  192 (364)
T ss_dssp             EE----ECCGG-G--TTCCCTTHHHHC---CTTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred             EE----eCCcc-c--ccchhHHHHHhc---cCCCCEEEEeCCCCCCCCCC-CHHHHHHHHHHhhhcCcEEEEECcChhhc
Confidence            11    10000 0  000023233333   24677788777788888776 79999999999999999999999999775


Q ss_pred             ccccCccccc---CCCCCcEEEeccccc-CCccchhhhe-eCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcH
Q 017259          176 RSGRMLASDW---EEVRPDMVILGKALG-GGVIPVSAVL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKL  250 (374)
Q Consensus       176 ~~g~~~~~~~---~~~~~d~~s~sK~~~-~G~~~~G~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~  250 (374)
                      +.+... ...   .+....+.|+||.++ +|+ |+||++ +++++.+.+...  ..+++.+++++.++.++++.   .++
T Consensus       193 ~~~~~~-~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~---~~~  265 (364)
T 1lc5_A          193 PHETGF-IPALKDNPHIWVLRSLTKFYAIPGL-RLGYLVNSDDAAMARMRRQ--QMPWSVNALAALAGEVALQD---SAW  265 (364)
T ss_dssp             TTCCCS-GGGCTTCTTEEEEEESTTTTTCTTT-CCEEEECCCHHHHHHHHHH--SCTTCSCHHHHHHHHHGGGC---HHH
T ss_pred             cCccch-hhHhccCCCEEEEEECchhhcCCcc-ceEEEEECCHHHHHHHHHh--CCCCCCCHHHHHHHHHHHhC---cHH
Confidence            433221 222   222223458999998 798 999999 899988877643  23677899999988887764   223


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEEe
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRLT  324 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi~  324 (374)
                      .++.++.....++.+.+....+|+ +...++.+.++++.++.     ...++.+.|.++||.++++.      .+++||+
T Consensus       266 ~~~~~~~~~~~~~~l~~~L~~~~~-~~~~~~~g~~~~~~~~~-----~~~~l~~~l~~~gi~v~~g~~~~~~~~~~iRis  339 (364)
T 1lc5_A          266 QQATWHWLREEGARFYQALCQLPL-LTVYPGRANYLLLRCER-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRVA  339 (364)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTSTT-EEECCCSSSEEEEEESC-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCC-CEECCCCCeEEEEECCC-----cHHHHHHHHHHCCcEEeeCcccCCCCCCEEEEE
Confidence            334333333334444333333333 22234567788887764     24578899999999998753      5799999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          325 PPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       325 ~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +   .+.+++++++++|+++++ .+
T Consensus       340 ~---~~~~~~~~l~~~l~~~~~-~~  360 (364)
T 1lc5_A          340 I---RSAAQNERLLAALRNVLT-GI  360 (364)
T ss_dssp             C---CCHHHHHHHHHHHHHHC----
T ss_pred             e---CCHHHHHHHHHHHHHHhh-cc
Confidence            3   368899999999998887 54

>3ez1_A Aminotransferase MOCR family; YP_604413.1, struct genomics, joint center for structural genomics, JCSG; 2.60A {Deinococcus geothermalis dsm 11300}

Probab=99.96  E-value=4.2e-29  Score=237.05  Aligned_cols=307  Identities=13%  Similarity=0.108  Sum_probs=213.2

Q ss_pred             CCcHHHHHHHHhcccCC--CeEEecCChHHHHH--HHHHHHHH--cc----cccccCCCCccEEEEeccCCCCccccccc
Q 017259           20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVE--TALKLARK--WG----YVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~--~al~~~~~--~~----~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .+...++++.++++++.  +++++|+|+++++.  .+++++..  .+    +.+.|     |+|++..|+|+++......
T Consensus        69 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~g-----d~Vlv~~p~y~~~~~~~~~  143 (423)
T 3ez1_A           69 VAGLPSARALFAGYLDVKAENVLVWNNSSLELQGLVLTFALLHGVRGSTGPWLSQT-----PKMIVTVPGYDRHFLLLQT  143 (423)
T ss_dssp             TTCCHHHHHHHHHHTTSCGGGEEECSSCHHHHHHHHHHHHHHTCCTTCSSCGGGGC-----CEEEEEESCCHHHHHHHHH
T ss_pred             CCChHHHHHHHHHHhCCChhhEEEeCCcHHHHHHHHHHHHHhccCCCccccccCCC-----CEEEEcCCCcHHHHHHHHH
Confidence            45578899999998854  58999999999997  88887752  10    00004     8999999999887665554


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHH-HhcCCEEEE
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYNILMIA  167 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~~i~li~  167 (374)
                      .+......    +...+ .    .|+++|++++++. +++++++++| ++|++|.+. +.+.+++|.++| ++||++||+
T Consensus       144 ~g~~~~~v----~~~~~-g----~d~~~l~~~l~~~-~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~a~~~~~~~li~  212 (423)
T 3ez1_A          144 LGFELLTV----DMQSD-G----PDVDAVERLAGTD-PSVKGILFVPTYSNPGGETI-SLEKARRLAGLQAAAPDFTIFA  212 (423)
T ss_dssp             HTCEEEEE----EEETT-E----ECHHHHHHHHHSC-TTEEEEEECSSSCTTTCCCC-CHHHHHHHHTCCCSSTTCEEEE
T ss_pred             cCCEEEec----cCCCC-C----CCHHHHHHHHhhC-CCceEEEECCCCCCCCCcCC-CHHHHHHHHHHHHhccCCEEEE
Confidence            43321111    00000 0    2799999999632 5788998775 677788777 788899999999 999999999


Q ss_pred             eccccCCcccc---cCc-cc-------ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHH
Q 017259          168 DEIQSGLARSG---RML-AS-------DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       168 Dea~~~~~~~g---~~~-~~-------~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (374)
                      ||+|+.+.+.+   ... ..       +..+....+.||||.+.+|+ |+||+++++++.+.+.......+++.+.+++.
T Consensus       213 De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (423)
T 3ez1_A          213 DDAYRVHHLVEEDRAEPVNFVVLARDAGYPDRAFVFASTSKITFAGA-GLGFVASSEDNIRWLSKYLGAQSIGPNKVEQA  291 (423)
T ss_dssp             ECTTSSCBCCSSSCCCCCCHHHHHHHHTCTTSEEEEEESTTTSCSSS-SCEEEEECHHHHHHHHHHHHHSCSCCCHHHHH
T ss_pred             ECCcchhhcCCCCCCCCcchhhhhhccCCCCeEEEEeCchhhccCCc-ceEEEEeCHHHHHHHHHHHhhhccCCCHHHHH
Confidence            99998532222   110 11       11122233559999977899 99999999999888876555667888999999


Q ss_pred             HHHHHHHH-Hh-hh----cHHHHHHHHHHHHHHHHHHHHHhCC-CceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          237 VAIASLDV-IR-DE----KLAERSAHLGEELRQHLFKIQQQFP-NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       237 aa~~al~~-~~-~~----~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      ++.++++. .. -.    +..+.++++.+.+.+.|.+....++ .+....+..+.++|+.++..    +..++.+.|.++
T Consensus       292 a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~  367 (423)
T 3ez1_A          292 RHVKFLTEYPGGLEGLMRDHAAIIAPKFRAVDEVLRAELGEGGEYATWTLPKGGYFISLDTAEP----VADRVVKLAEAA  367 (423)
T ss_dssp             HHHHHHHHSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTSSEEECCCSBSSCEEEEESSS----CHHHHHHHHHHT
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcCCCceEEeCCCccEEEEEECCCC----cHHHHHHHHHHC
Confidence            88888875 11 11    2233444455555555544332221 01112234578889888764    577899999999


Q ss_pred             CeEeccC----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          310 GILAKPT----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       310 Gi~v~~~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||.++++          ..+++||+++.. +++++++++++|+++++ ++
T Consensus       368 gv~v~~~g~~~~~~~~~~~~~iRis~~~~-~~~~i~~~~~~l~~~l~-~~  415 (423)
T 3ez1_A          368 GVSLTPAGATYPAGQDPHNRNLRLAPTRP-PVEEVRTAMQVVAACIR-LA  415 (423)
T ss_dssp             TEECCCTTTTSSTTCCSSSCEEEECCSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred             CcEEecCcccccCCCCCCCCeEEEEcCCC-CHHHHHHHHHHHHHHHH-HH
Confidence            9999882          258999998655 99999999999999987 54

>1elu_A L-cysteine/L-cystine C-S lyase; FES cluster biosynthesis, pyridoxal 5'-phosphate, thiocystei aminoacrylate, enzyme-product complex; HET: PDA; 1.55A {Synechocystis SP} SCOP: c.67.1.3 PDB: 1elq_A* 1n2t_A* 1n31_A*

Probab=99.96  E-value=9.2e-29  Score=231.82  Aligned_cols=282  Identities=14%  Similarity=0.099  Sum_probs=205.7

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc---ccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS---MSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~---~~~~~~   95 (374)
                      +...++++.+++++|.+  ++++++||++|++.+++.++    ..+|     |+|++..++|++.......   ..+.. 
T Consensus        59 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~----~~~g-----d~vl~~~~~~~~~~~~~~~~~~~~g~~-  128 (390)
T 1elu_A           59 QLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD----WHQG-----DEILLTDCEHPGIIAIVQAIAARFGIT-  128 (390)
T ss_dssp             HHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC----CCTT-----CEEEEETTCCHHHHHHHHHHHHHHCCE-
T ss_pred             HHHHHHHHHHHHHcCCCHHHEEEeCChHHHHHHHHhCCC----CCCC-----CEEEEecCcccHHHHHHHHHHHHhCcE-
Confidence            56788999999998765  89999999999999998873    3456     9999999999886543211   11111 


Q ss_pred             ccccCCCCCCCceeccC-------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH----hcCCE
Q 017259           96 AIRGFGPLLPGHLKVDF-------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS----KYNIL  164 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~----~~~i~  164 (374)
                                 +..++.       .|+++++++++   ++++++++++++|++|.+.+    +++|.++|+    +||++
T Consensus       129 -----------~~~v~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~~~  190 (390)
T 1elu_A          129 -----------YRFFPVAATLNQGDAAAVLANHLG---PKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVR  190 (390)
T ss_dssp             -----------EEEECCGGGSSSSCHHHHHHTTCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCE
T ss_pred             -----------EEEEcCCCCCCccchHHHHHHhcC---CCceEEEEeccccCCceecC----HHHHHHHHhhhhhhcCcE
Confidence                       111111       26788887776   57999999999999999998    999999999    99999


Q ss_pred             EEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC------------------
Q 017259          165 MIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH------------------  224 (374)
Q Consensus       165 li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~------------------  224 (374)
                      +|+||+|+ ++..  .  .......+|++  |++|.+.+|. ++|++++++++.+.+.....                  
T Consensus       191 li~Dea~~-~g~~--~--~~~~~~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  264 (390)
T 1elu_A          191 VLVDGAQS-AGSL--P--LDFSRLEVDYYAFTGHKWFAGPA-GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAE  264 (390)
T ss_dssp             EEEECTTT-BTTB--C--CCTTTSCCSEEEEESSSTTCCCT-TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECS
T ss_pred             EEEEcccc-cCCc--C--CChhhcCCCEEEccccccccCCC-ceEEEEECHHhHhhcCCccccCCcccccccCccccccc
Confidence            99999997 3222  1  11123345665  5889888888 89999999988888765321                  


Q ss_pred             ----CCCCCCCHHHHHHHHHHHHHHhhhc----HHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCC
Q 017259          225 ----GSTFGGNPLASAVAIASLDVIRDEK----LAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTA  294 (374)
Q Consensus       225 ----~~~~~~~~~~~~aa~~al~~~~~~~----~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~  294 (374)
                          ....+.+.++++++.++++.+.+.+    +.++++++.+++.+.|+++    +++....  ++.+.++.+.++...
T Consensus       265 ~~~~~~~~~~~~~~~~a~~~al~~l~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~  340 (390)
T 1elu_A          265 GGKRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQL----PHVHCLATSAPQAGLVSFTVDSPL  340 (390)
T ss_dssp             GGGGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHS----TTEEESCSSCCSSSEEEEEECSSS
T ss_pred             chHhhCCCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhc----CCcEEecCccccccEEEEEcCCCC
Confidence                1223557777888888888765543    4556666666666666553    2221111  345778888775433


Q ss_pred             CchhHHHHHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          295 LPVSAYDICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                         +..++.+.|.++||.++++. .+++||+++...+++++++++++|++
T Consensus       341 ---~~~~~~~~l~~~gi~v~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~  387 (390)
T 1elu_A          341 ---GHRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLAD  387 (390)
T ss_dssp             ---CHHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTT
T ss_pred             ---CHHHHHHHHHHCCEEEEecCCCCeEEEecccCCCHHHHHHHHHHHHh
Confidence               57889999999999999874 68999999888999999999998864

>3ppl_A Aspartate aminotransferase; dimer, PLP-dependent transferase-like fold structural genomics, joint center for structural genomics; HET: MSE PLP UNL; 1.25A {Corynebacterium glutamicum}

Probab=99.96  E-value=8.5e-29  Score=235.25  Aligned_cols=302  Identities=14%  Similarity=0.088  Sum_probs=213.7

Q ss_pred             CCcHHHHHHHHhcccCC--CeEEecCChHHHH--HHHHHHHHH--cc-----cccccCCCCccEEEEeccCCCCcccccc
Q 017259           20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALKLARK--WG-----YVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~--~~al~~~~~--~~-----~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      .....++++.++++++.  +++++|+|+++++  +.+++++..  .+     ...+|     |+|++.+|+|+++.....
T Consensus        77 ~~g~~~lr~~ia~~~~~~~~~i~~t~G~~~al~~~~~~~~l~~~~~g~~~~~~~~~g-----d~V~v~~p~y~~~~~~~~  151 (427)
T 3ppl_A           77 LDGIVDIRQIWADLLGVPVEQVLAGDASSLNIMFDVISWSYIFGNNDSVQPWSKEET-----VKWICPVPGYDRHFSITE  151 (427)
T ss_dssp             SSCCHHHHHHHHHHHTSCGGGEEECSSCHHHHHHHHHHHHHHHCCTTCSSCGGGSSC-----CEEEEEESCCHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHhCCCcceEEEeCCcHHHHHHHHHHHHHhccCCcccccccCCCC-----CEEEEcCCCcHHHHHHHH
Confidence            34678888999888754  6899999999999  578887753  10     00025     999999999988765555


Q ss_pred             cccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHH-HhcC
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLC-SKYN  162 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~-~~~~  162 (374)
                      ..+..             +..++.    .|+++|+++++.  +++++++++| ++|++|.+. +.+.+++|.++| ++||
T Consensus       152 ~~g~~-------------~~~v~~~~~g~d~~~l~~~l~~--~~~~~v~~~p~~~NPtG~~~-~~~~~~~l~~~a~~~~~  215 (427)
T 3ppl_A          152 RFGFE-------------MISVPMNEDGPDMDAVEELVKN--PQVKGMWVVPVFSNPTGFTV-TEDVAKRLSAMETAAPD  215 (427)
T ss_dssp             HTTCE-------------EEEEEEETTEECHHHHHHHTTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTT
T ss_pred             HcCCE-------------EEEeCCCCCCCCHHHHHHHHhc--CCCeEEEECCCCCCCCCccC-CHHHHHHHHHHHhhcCC
Confidence            44322             111221    178999998842  4789998885 677788777 788899999999 9999


Q ss_pred             CEEEEeccccCCcccccCc---cc-c------cCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCH
Q 017259          163 ILMIADEIQSGLARSGRML---AS-D------WEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNP  232 (374)
Q Consensus       163 i~li~Dea~~~~~~~g~~~---~~-~------~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~  232 (374)
                      ++||+||+|+++.+.+...   .. .      ..+....+.||||.+++|+ |+||+++++++.+.+.......+++.+.
T Consensus       216 ~~ii~De~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~-r~G~~~~~~~l~~~~~~~~~~~~~~~~~  294 (427)
T 3ppl_A          216 FRVVWDNAYAVHTLTDEFPEVIDIVGLGEAAGNPNRFWAFTSTSKITLAGA-GVSFFLTSAENRKWYTGHAGIRGIGPNK  294 (427)
T ss_dssp             CEEEEECTTTTCBSSSCCCCCCCHHHHHHHTTCTTSEEEEEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCH
T ss_pred             CEEEEECCCcccccCCCCCCccchhhhhhccCCCCcEEEEechhhccCcCc-cEEEEEcCHHHHHHHHHHhhcccCCCCH
Confidence            9999999999853333211   11 1      1223334569999977899 9999999999888887654555678899


Q ss_pred             HHHHHHHHHHHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          233 LASAVAIASLDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       233 ~~~~aa~~al~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.+.++.++++...   .  ....+.++++.+.+.+.|++....++......+..|.++|+.++..    +..++.+.|.
T Consensus       295 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~  370 (427)
T 3ppl_A          295 VNQLAHARYFGDAEGVRAVMRKHAASLAPKFNKVLEILDSRLAEYGVAQWTVPAGGYFISLDVVPG----TASRVAELAK  370 (427)
T ss_dssp             HHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGTCCEECCCSBSSCEEEECSTT----CHHHHHHHHH
T ss_pred             HHHHHHHHHHhChhhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEeCCCccEEEEEECCcc----hHHHHHHHHH
Confidence            99988887776411   1  1334455555666666665543322112222334578888888754    5788999999


Q ss_pred             HCCeEeccC----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 ERGILAKPT----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 ~~Gi~v~~~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++||.++++          ..+++||+++.. +++++++++++|+++++ ++
T Consensus       371 ~~gv~v~~~g~~~~~~~~~~~~~~Ris~~~~-~~~~i~~~~~~l~~~l~-~~  420 (427)
T 3ppl_A          371 EAGIALTGAGSSYPLRQDPENKNLRLAPSLP-PVEELEVAMDGVATCVL-LA  420 (427)
T ss_dssp             HTTEECCCTTTTSGGGCCTTSCEEEECCSSS-CHHHHHHHHHHHHHHHH-HH
T ss_pred             HCCCEEecCcCcCCCCCCCCCCeEEEECCCC-CHHHHHHHHHHHHHHHH-HH
Confidence            999999882          368999998654 89999999999999987 54

>1kmj_A Selenocysteine lyase; persulfide perselenide NIFS pyridoxal phosphate, structural PSI, protein structure initiative; HET: PLP; 2.00A {Escherichia coli} SCOP: c.67.1.3 PDB: 1i29_A* 1jf9_A* 1kmk_A* 1c0n_A*

Probab=99.96  E-value=2.7e-28  Score=229.75  Aligned_cols=296  Identities=16%  Similarity=0.172  Sum_probs=204.9

Q ss_pred             CCcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+...++++.++++++.   +++++++|+++|++.++++++.+. ..+|     |+|++.+++||+.......+....+.
T Consensus        66 ~~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~vl~~~~~~~~~~~~~~~~~~~~g~  139 (406)
T 1kmj_A           66 TEKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN-VRAG-----DNIIISQMEHHANIVPWQMLCARVGA  139 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCCCCCeEEEeCChhHHHHHHHHHhhhhc-CCCC-----CEEEEecccchHHHHHHHHHHHhCCC
Confidence            45678899999999876   689999999999999999884221 3456     99999999998865432111100011


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                      ...+.+...+.    ..|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+.. .
T Consensus       140 ~~~~~~~~~~~----~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~~g-~  207 (406)
T 1kmj_A          140 ELRVIPLNPDG----TLQLETLPTLFD---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQAVM-H  207 (406)
T ss_dssp             EEEEECBCTTS----CBCGGGHHHHCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTTTT-T
T ss_pred             EEEEEecCCCC----CcCHHHHHHHhc---cCCeEEEEeCCCccccCcCC----HHHHHHHHHHcCCEEEEEchhhcC-C
Confidence            10011111111    127889998886   57899999999999999998    999999999999999999999842 1


Q ss_pred             cccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCCCCHH
Q 017259          177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFGGNPL  233 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~  233 (374)
                      .  .+...  ...+|++  |+||.++ +. ++|++++++++.+.+.+...+.                     ..+.+.+
T Consensus       208 ~--~~~~~--~~~~d~~~~s~~K~~g-~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (406)
T 1kmj_A          208 H--PVDVQ--ALDCDFYVFSGHKLYG-PT-GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNT  281 (406)
T ss_dssp             S--CCCHH--HHTCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHCCCSSCSTTSEEEEETTTEEEECCTTGGGCCSSCCH
T ss_pred             C--CCccc--ccCCCEEEEEchhccC-CC-CcEEEEEeHHHHhhcCCcccCCCceeecccccccccCCCchhccCCCCCH
Confidence            1  11111  2245654  7889884 33 4689999999988887543221                     1233555


Q ss_pred             HHHHHH-HHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE--EeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          234 ASAVAI-ASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       234 ~~~aa~-~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .+.++. ++++.+.+.   ++.++++++.+++.+.|+++    |++ ....+  .+.++.+.++..    +..++.+.|.
T Consensus       282 ~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~-~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~  352 (406)
T 1kmj_A          282 GGIIGLGAALEYVSALGLNNIAEYEQNLMHYALSQLESV----PDL-TLYGPQNRLGVIAFNLGKH----HAYDVGSFLD  352 (406)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTS----TTE-EEESCTTCCSEEEEEETTC----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhcC----CCe-EEecCCCcCCEEEEEECCC----CHHHHHHHHh
Confidence            555555 677776542   45556666666666665543    222 22223  567777777532    5778999999


Q ss_pred             HCCeEeccCC------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 ERGILAKPTH------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 ~~Gi~v~~~~------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++||.++++.            .+++||+++..++++|+++++++|+++++ .+
T Consensus       353 ~~gi~v~~g~~~~~~~~~~~g~~~~iRis~~~~~t~~~i~~~~~~l~~~~~-~l  405 (406)
T 1kmj_A          353 NYGIAVRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR-LL  405 (406)
T ss_dssp             HTTEECEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             hCCcEEEeccccchHHHHhcCCCCeEEEEeecCCCHHHHHHHHHHHHHHHH-hh
Confidence            9999998643            48999999988899999999999999987 53

>3f9t_A TDC, L-tyrosine decarboxylase MFNA; NP_247014.1, L-tyrosine decarboxylase MFNA (EC 4.1.1.25), ST genomics; HET: PLP; 2.11A {Methanocaldococcus jannaschii}

Probab=99.96  E-value=3.1e-28  Score=228.47  Aligned_cols=290  Identities=14%  Similarity=0.082  Sum_probs=200.4

Q ss_pred             CCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcc--------cccccCCCCccEEEEeccCCCCccccccc
Q 017259           20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWG--------YVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~--------~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .+..++++++++++++.  +++++++||++|++.++++++.+.        ...+|     |+|++..++|++....+..
T Consensus        68 ~~~~~~l~~~la~~~~~~~~~i~~~~ggt~a~~~~~~~~~~~~~~~~~~~~~~~~g-----d~vl~~~~~~~~~~~~~~~  142 (397)
T 3f9t_A           68 KLLEEKAVALLGSLLNNKDAYGHIVSGGTEANLMALRCIKNIWREKRRKGLSKNEH-----PKIIVPITAHFSFEKGREM  142 (397)
T ss_dssp             HHHHHHHHHHHHHHTTCTTCEEEEESCHHHHHHHHHHHHHHHHHHHHHTTCCCCSS-----CEEEEETTCCTHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEecCcHHHHHHHHHHHHHHHHhhhhhcccCCCC-----eEEEECCcchhHHHHHHHH
Confidence            44556788899988854  478999999999999999996541        01135     9999999999876555444


Q ss_pred             ccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL  164 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~  164 (374)
                      .+.             .+..++.+     |+++|+++++++  +++++++++++|++|.+.+    +++|.++|++||++
T Consensus       143 ~g~-------------~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~  203 (397)
T 3f9t_A          143 MDL-------------EYIYAPIKEDYTIDEKFVKDAVEDY--DVDGIIGIAGTTELGTIDN----IEELSKIAKENNIY  203 (397)
T ss_dssp             HTC-------------EEEEECBCTTSSBCHHHHHHHHHHS--CCCEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCE
T ss_pred             cCc-------------eeEEEeeCCCCcCCHHHHHHHHhhc--CCeEEEEECCCCCCCCCCC----HHHHHHHHHHhCCe
Confidence            332             12222222     899999999853  6788888888999999987    99999999999999


Q ss_pred             EEEeccccCCc--cccc---------CcccccCCCCCcEEEecccccCCccchhhheeCH-HHHhhcCC---CCC-----
Q 017259          165 MIADEIQSGLA--RSGR---------MLASDWEEVRPDMVILGKALGGGVIPVSAVLADK-EVMLCIQP---GEH-----  224 (374)
Q Consensus       165 li~Dea~~~~~--~~g~---------~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~-~~~~~~~~---~~~-----  224 (374)
                      ||+||+|+++.  ..+.         .+.... +.+..+.+++|.+++|. ++|+++.++ .+.+.+..   ...     
T Consensus       204 li~Dea~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~K~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (397)
T 3f9t_A          204 IHVDAAFGGLVIPFLDDKYKKKGVNYKFDFSL-GVDSITIDPHKMGHCPI-PSGGILFKDIGYKRYLDVDAPYLTETRQA  281 (397)
T ss_dssp             EEEECTTGGGTGGGCCGGGCCTTCCCCCSGGG-TCSEEECCTTTTTCCCS-SCEEEEESSGGGGGGTCEECTTSSSSEEC
T ss_pred             EEEEccccchhhhhcccccccccccccccccc-cCCeEEEccccccCCCC-CceEEEEeCHHHHHhhccCCccccCCCcc
Confidence            99999998642  2222         222222 33333446779888888 999987754 44444421   111     


Q ss_pred             ---CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          225 ---GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       225 ---~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                         +.....+.+++.++.+.+.....++..++.+++.+++.+.|++.  .+ ..+.  .+.+.++++.++      ...+
T Consensus       282 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~--~~~~~~~~~~~~------~~~~  350 (397)
T 3f9t_A          282 TILGTRVGFGGACTYAVLRYLGREGQRKIVNECMENTLYLYKKLKEN--NF-KPVI--EPILNIVAIEDE------DYKE  350 (397)
T ss_dssp             SSCSSCCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC-CBSS--CCSSSEEEEECT------THHH
T ss_pred             ccccccccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHC--CC-EEEc--CCCccEEEEEeC------CHHH
Confidence               11112244444455544433222356777777888888888776  22 1222  245667776554      3678


Q ss_pred             HHHHHHHCCeEeccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          302 ICLKMKERGILAKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+.|.++||.++++. ++++||+++..++++++++++++|+++++
T Consensus       351 ~~~~l~~~gi~v~~~~~~~~~Ri~~~~~~~~e~i~~~~~~l~~~l~  396 (397)
T 3f9t_A          351 VCKKLRDRGIYVSVCNCVKALRIVVMPHIKREHIDNFIEILNSIKR  396 (397)
T ss_dssp             HHHHHHHTTCBCEECSSSSEEEEECCTTCCHHHHHHHHHHHHHHC-
T ss_pred             HHHHHHhCCeEEeccCCCCEEEEEEcCCCCHHHHHHHHHHHHHhhC
Confidence            9999999999999875 58999999988999999999999998765

>3g7q_A Valine-pyruvate aminotransferase; NP_462565.1, structur genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Salmonella typhimurium}

Probab=99.96  E-value=1e-28  Score=233.84  Aligned_cols=303  Identities=12%  Similarity=0.089  Sum_probs=201.4

Q ss_pred             CCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe-ccCCCCcccccccc
Q 017259           20 NDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGCFHGRTLAAISM   90 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~-~~~yhg~~~~~~~~   90 (374)
                      .....++++.+++++        ..+++++|+|+++|++.+++++     ..+|.+.++++|++. .|+|+++...+...
T Consensus        74 ~~g~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~t~al~~~~~~l-----~~~gd~~~~~~vi~~~~p~~~~~~~~~~~~  148 (417)
T 3g7q_A           74 PQGKTALLNALAVLLRETLGWDIEPQNIALTNGSQSAFFYLFNLF-----AGRRADGSTKKVLFPLAPEYIGYADSGLED  148 (417)
T ss_dssp             TTSHHHHHHHHHHHHHHHHCCCCCGGGEEEESCHHHHHHHHHHHH-----SBC----CCBEEEESSCCCHHHHHC-----
T ss_pred             CCCcHHHHHHHHHHHHHHhCCCCCcccEEEeCCcHHHHHHHHHHH-----cCCCccCCcceEEEeCCCccccchhhccch
Confidence            334556666666653        4569999999999999999998     455510111288886 99998876544222


Q ss_pred             cCCccccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL  164 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~  164 (374)
                      ......       ...+..++.      -|+++++  +.   ++++++++++++|++|.+. +.+.+++|.++|++||++
T Consensus       149 ~~~~~~-------~~~~~~~~~~~~~~~~d~~~l~--~~---~~~~~v~~~~p~NptG~~~-~~~~~~~l~~~a~~~~~~  215 (417)
T 3g7q_A          149 DLFVSA-------RPNIELLPEGQFKYHVDFEHLH--IG---EETGMICVSRPTNPTGNVI-TDEELMKLDRLANQHNIP  215 (417)
T ss_dssp             CCEEEC-------CCEEEEEGGGEEEEECCGGGCC--CC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCC
T ss_pred             hhhccc-------cCcccccCCcccccccCHHHhc--cc---cCceEEEECCCCCCCCCcc-CHHHHHHHHHHHHHcCCE
Confidence            110000       011111111      1667776  33   5789999999999999877 788899999999999999


Q ss_pred             EEEeccccCCcccccCc-cc--ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          165 MIADEIQSGLARSGRML-AS--DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       165 li~Dea~~~~~~~g~~~-~~--~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      +|+||+|+.+. .+..+ ..  ...+....+.|+||...+|+ |+||+++++++.+.+.......+++.+++++.++.+.
T Consensus       216 li~De~~~~~~-~~~~~~~~~~~~~~~~i~~~s~sK~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (417)
T 3g7q_A          216 LVIDNAYGVPF-PGIIFSEARPLWNPNIILCMSLSKLGLPGS-RCGIIIANDKTITAIANMNGIISLAPGGMGPAMMCEM  293 (417)
T ss_dssp             EEEECTTCTTT-TCCBCSCCCCCCCTTEEEEEESGGGTCTTS-CCEEEECCHHHHHHHHHHHHHHCCCCCSHHHHHHHHH
T ss_pred             EEEeCCCcccc-ccccccccccCCCCCEEEEEechhccCCCc-ceEEEEeCHHHHHHHHHhhcceeeCCCcHHHHHHHHH
Confidence            99999997531 11110 00  11122223559999655798 9999999999988887655556677888998888887


Q ss_pred             HHHHhhh-----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEecc
Q 017259          242 LDVIRDE-----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       242 l~~~~~~-----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ++.....     .+.++++++.+.+.+.|++....+ ++....+..+.++|+.++. ..   +..++.+.|.++||.+++
T Consensus       294 l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~~~g~~~~~~~~~~~~---~~~~l~~~l~~~gi~v~~  369 (417)
T 3g7q_A          294 IKRNDLLRLSETVIKPFYYQRVQQTIAIIRRYLSEE-RCLIHKPEGAIFLWLWFKDLPI---TTELLYQRLKARGVLMVP  369 (417)
T ss_dssp             HHTTCHHHHHHHTHHHHHHHHHHHHHHHHHHHCCTT-TCEEECCCBSSEEEEECTTCSS---CHHHHHHHHHHTTEECEE
T ss_pred             HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcccC-CceeeCCCcceEEEEEcCCCCC---CHHHHHHHHHHCCEEEEC
Confidence            7642211     134455556666666665542211 1222223457888888865 22   678999999999999987


Q ss_pred             CC-------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 TH-------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~~-------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.             .+++||+++.  +++++++++++|+++++ ++
T Consensus       370 g~~f~~~~~~~~~~~~~~iRis~~~--~~~~i~~~~~~l~~~l~-~~  413 (417)
T 3g7q_A          370 GHYFFPGLDKPWPHTHQCMRMNYVP--EPDKIEAGVKILAEEIE-RA  413 (417)
T ss_dssp             GGGGCTTBSSCCGGGGGEEEEESCS--CHHHHHHHHHHHHHHHH-HH
T ss_pred             chhhCCCCccccccCCCeEEEEecC--CHHHHHHHHHHHHHHHH-HH
Confidence            42             4699999774  99999999999999987 54

>3kgw_A Alanine-glyoxylate aminotransferase; AAH25799.1, putative aminotransferase, structural genomics, center for structural genomics, JCSG; HET: PLP; 1.65A {Mus musculus} SCOP: c.67.1.3 PDB: 3kgx_A 3imz_A* 3r9a_A* 1h0c_A* 1j04_A*

Probab=99.96  E-value=2.3e-28  Score=229.21  Aligned_cols=296  Identities=16%  Similarity=0.183  Sum_probs=210.5

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~   95 (374)
                      .+...+++++++++++.+   ++++++||++|++.+++.+     .++|     |+|++..++|++.... .....+...
T Consensus        55 ~~~~~~l~~~la~~~~~~~~~~v~~~~gg~~al~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~  124 (393)
T 3kgw_A           55 LQIMEEIKQGIQYVFQTRNPLTLVVSGSGHCAMETALFNL-----LEPG-----DSFLTGTNGIWGMRAAEIADRIGARV  124 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESCCTTTHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEeCCcHHHHHHHHHhc-----CCCC-----CEEEEEeCCchhHHHHHHHHHcCCce
Confidence            445678899999988654   5899999999999999988     5667     9999999888653211 111111111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ...   +...+.    ..|+++++++++++  +++++++++++|++|.+.+    +++|.++|++||++||+||+|+ ++
T Consensus       125 ~~~---~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~-~g  190 (393)
T 3kgw_A          125 HQM---IKKPGE----HYTLQEVEEGLAQH--KPVLLFLVHGESSTGVVQP----LDGFGELCHRYQCLLLVDSVAS-LG  190 (393)
T ss_dssp             EEE---ECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-TT
T ss_pred             EEE---eCCCCC----CCCHHHHHHHHhhC--CCcEEEEeccCCcchhhcc----HHHHHHHHHHcCCEEEEECCcc-cc
Confidence            100   110111    12899999999853  6889999999999999987    9999999999999999999997 21


Q ss_pred             ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-----------------------CCCCCC
Q 017259          176 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-----------------------GSTFGG  230 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~  230 (374)
                        +..+....  ...|++  +++|+++++. ++|++++++++.+.+.....                       ...++.
T Consensus       191 --~~~~~~~~--~~~d~~~~s~sK~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  265 (393)
T 3kgw_A          191 --GVPIYMDQ--QGIDIMYSSSQKVLNAPP-GISLISFNDKAKYKVYSRKTKPVSFYTDITYLAKLWGCEGETRVIHHTT  265 (393)
T ss_dssp             --TSCCCTTT--TTCCEEEEESSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCCCC
T ss_pred             --Ccccchhh--cCCCEEEecCcccccCCC-ceeEEEECHHHHHHHhccCCCCCceeecHHHHHHhhhhccccCCCCCCC
Confidence              11222222  234655  5559998877 88999999998887753211                       123456


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCce-ee-EEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYV-KE-VRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +..+++++.++++.+.+   +++.++++++++++.+.|+++.  + ... .. ....+.++++.++...   +..++.+.
T Consensus       266 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  339 (393)
T 3kgw_A          266 PVTSLYCLRESLALIAEQGLENCWRRHREATAHLHKHLQEMG--L-KFFVKDPEIRLPTITTVTVPAGY---NWRDIVSY  339 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBSSSSGGGBCSSEEEEECCTTB---CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--C-eeccCChhhcCCeEEEEeCCCCC---CHHHHHHH
Confidence            78888888888887655   3567778888888888887762  2 111 11 1123456667776443   67899999


Q ss_pred             HHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          306 MKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       306 l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      |+++ ||.++++    .++++|+++ +...+++++++++++|+++++ ++.+
T Consensus       340 l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~~~  390 (393)
T 3kgw_A          340 VLDHFSIEISGGLGPTEERVLRIGLLGYNATTENVDRVAEALREALQ-HCPK  390 (393)
T ss_dssp             HHHHHCEECBCCCGGGTTTEEEEECCGGGCCHHHHHHHHHHHHHHHH-HSCB
T ss_pred             HHHhCCEEEeCCcccCCCCEEEEEecccCCCHHHHHHHHHHHHHHHH-hhhh
Confidence            9988 9999975    368999997 666799999999999999998 7643

>3d6k_A Putative aminotransferase; APC82464, corynebacterium diphthe structural genomics, PSI-2, protein structure initiative; 2.00A {Corynebacterium diphtheriae}

Probab=99.96  E-value=1.8e-28  Score=232.66  Aligned_cols=306  Identities=14%  Similarity=0.106  Sum_probs=209.8

Q ss_pred             cHHHHHHHHhcccCC--CeEEecCChHHHH--HHHHHHHHHcccccccCCC----CccEEEEeccCCCCcccccccccCC
Q 017259           22 KFPVFAERLTSMFGY--DMVLPMNTGAEGV--ETALKLARKWGYVKKKFSI----DEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~--~~al~~~~~~~~~~~G~~~----~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      ...++++.++++++.  +++++|+|+++++  ..+++++....  .+|...    +.++|++.+|+|+++...+...+..
T Consensus        77 G~~~lr~~ia~~~~~~~~~i~~t~G~~~al~l~~~~~~l~~~~--~~g~~~~~~~d~~~Vl~~~p~y~~~~~~~~~~g~~  154 (422)
T 3d6k_A           77 GIADIRELWAEALGLPADLVVAQDGSSLNIMFDLISWSYTWGN--NDSSRPWSAEEKVKWLCPVPGYDRHFTITEHFGFE  154 (422)
T ss_dssp             CCHHHHHHHHHHHTCCGGGEEECSSCHHHHHHHHHHHHHHHCC--TTCSSCGGGSSCCEEEEEESCCHHHHHHHHHHTCE
T ss_pred             CCHHHHHHHHHHhCCChhHEEEecchHHHHHHHHHHHHhcCcc--cccccccccCCCCEEEEeCCccHHHHHHHHHcCCE
Confidence            378899999988754  5899999999997  56666664210  001000    0168999999998877655544322


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEE-ccccCCCCcccCChhHHHHHHHHHH-hcCCEEEEeccc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLF-EPIQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQ  171 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~-~~~~~~~g~~~~~~~~l~~l~~l~~-~~~i~li~Dea~  171 (374)
                      ....    +...+.     .|++++++++++  .+++++++ .+++|++|.+. +.+++++|.++|+ +||++||+||+|
T Consensus       155 ~~~v----~~~~~g-----~d~~~l~~~l~~--~~~~~v~~~~~~~NPtG~~~-~~~~l~~l~~~~~~~~~~~li~De~y  222 (422)
T 3d6k_A          155 MINV----PMTDEG-----PDMGVVRELVKD--PQVKGMWTVPVFGNPTGVTF-SEQTCRELAEMSTAAPDFRIVWDNAY  222 (422)
T ss_dssp             EEEE----EEETTE-----ECHHHHHHHHTS--TTEEEEEECCSSCTTTCCCC-CHHHHHHHHHCCCSSTTCEEEEECTT
T ss_pred             EEec----CCCCCC-----CCHHHHHHHHhc--CCCeEEEEcCCCCCCCCCCC-CHHHHHHHHHHHhhccCCEEEEECCc
Confidence            1111    000000     279999998863  26888884 55788888766 8999999999999 999999999999


Q ss_pred             cC--CcccccCc-cc-------ccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          172 SG--LARSGRML-AS-------DWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       172 ~~--~~~~g~~~-~~-------~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      +.  |...+..+ ..       ...+....+.||||..++|+ |+||+++++++++.+.......+++.+.+++.++.++
T Consensus       223 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~Gl-riG~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~  301 (422)
T 3d6k_A          223 ALHTLSDEFPIVHNVIEFAQAAGNPNRFWFMSSTSKITHAGS-GVSFFASSKENIEWYASHANVRGIGPNKLNQLAHAQF  301 (422)
T ss_dssp             TTCBSSSCCCCCCCHHHHHHHTTCTTCEEEEEESTTTSCTTS-SCEEEECCHHHHHHHHHHHHHHCSCCCHHHHHHHHHH
T ss_pred             cccccCCCCCCCcChhhHhhccCCCCcEEEEcChhhhcCccc-ceEEEEeCHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence            84  54433211 21       11233334569999966799 9999999999888887554455677899999988888


Q ss_pred             HHHHh---h--hcHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          242 LDVIR---D--EKLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       242 l~~~~---~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ++...   .  +...+.++++.+++.+.|++....+ +.+. ..+..+.++|+.++..    +..++.+.|.++||.+++
T Consensus       302 l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~l~~~-~~~~~~~p~~g~~~~~~~~~~----~~~~~~~~l~~~gV~v~~  376 (422)
T 3d6k_A          302 FGDVAGLKAHMLKHAASLAPKFERVLEILDSRLSEY-GVAKWTSPTGGYFISVDVVPG----TASRVVELAKEAGIALTG  376 (422)
T ss_dssp             HCSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGG-TCEEECCCSBSSCEEEEESTT----CHHHHHHHHHHTTEECCC
T ss_pred             HhCcchHHHHHHHHHHHHHHHHHHHHHHHHHhcCcC-CceEEeCCCcceEEEEECCCC----CHHHHHHHHHHCCeEEEc
Confidence            76311   1  1234445556666666666543322 1222 1233578889888753    467788889999999988


Q ss_pred             C----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 T----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +          ..+++||+++. .+++++++++++|+++++ ++
T Consensus       377 ~g~~f~~~~~~~~~~iRis~~~-~~~e~i~~~~~~l~~~l~-~~  418 (422)
T 3d6k_A          377 AGSSFPLHNDPNNENIRLAPSL-PPVAELEVAMDGFATCVL-MA  418 (422)
T ss_dssp             TTTTSGGGCCTTSCEEEECCSS-SCHHHHHHHHHHHHHHHH-HH
T ss_pred             CccccCCCCCCCCCeEEEecCC-CCHHHHHHHHHHHHHHHH-HH
Confidence            3          14799999776 799999999999999987 54

>2bwn_A 5-aminolevulinate synthase; tetrapyrrole biosynthesis, heme biosynthesis, pyridoxal PHOS dependent, transferase, acyltransferase; HET: LLP; 2.1A {Rhodobacter capsulatus} SCOP: c.67.1.4 PDB: 2bwo_A* 2bwp_A*

Probab=99.96  E-value=8.5e-28  Score=226.40  Aligned_cols=307  Identities=15%  Similarity=0.157  Sum_probs=218.4

Q ss_pred             hHHHHHHHhcccc-C----cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLS-S----RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~-~----~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++.+.... .    .+...+...++++.++++++.+..++.++|++++..++.++..   ..+|     |+|++.
T Consensus        67 ~a~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sG~~a~~~~~~~l~~---~~~g-----d~Vl~~  138 (401)
T 2bwn_A           67 AAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRV---LFPG-----LIIYSD  138 (401)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHH---HSTT-----CEEEEE
T ss_pred             HHHHHHHHHcCCCCCCcCcccCChHHHHHHHHHHHHHhCCCcEEEECCcHHHHHHHHHHHhc---CCCC-----CEEEEC
Confidence            5666666653221 1    1123457888999999999877666667777788888877532   2356     899999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .++|++........+             ..+..++++|++++++.+++.. ++++++++++++|++|.+.+    +++|.
T Consensus       139 ~~~~~~~~~~~~~~g-------------~~~~~v~~~d~~~le~~l~~~~~~~~~~v~~~~~~nptG~~~~----l~~i~  201 (401)
T 2bwn_A          139 SLNHASMIEGIKRNA-------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEIC  201 (401)
T ss_dssp             TTCCHHHHHHHHHSC-------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHH
T ss_pred             chhhHHHHHHHHHcC-------------CeEEEEcCCCHHHHHHHHHhhccCCceEEEEecCcCCCCCcCC----HHHHH
Confidence            998866544332211             3355566678999999998654 47899999999999999998    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCc--EEEecccccCCccchhhheeCHHHHhhcCCCCC--CCC
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GST  227 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d--~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~  227 (374)
                      ++|++||+++|+||+|+ + ++..|..+. ...+.  .++  +.|+||++++   +.||+++++++.+.+.....  ..+
T Consensus       202 ~l~~~~~~~li~Dea~~~g~~~~~g~~~~-~~~~~~~~~~i~~~s~sK~~~~---~GG~~~~~~~~~~~l~~~~~~~~~~  277 (401)
T 2bwn_A          202 DIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFS  277 (401)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTS
T ss_pred             HHHHHcCCEEEEeccccccccCCCCceee-eccCccccCcEEEeechhhccC---CCCEEecCHHHHHHHHHhCcCceec
Confidence            99999999999999999 3 454554332 22232  224  4499999982   22678888887776653211  112


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      .+.++++++++.++++.+...   ++.++++++.+++.+.|+++  .+ .+.   .+.+.++++.++..   .+..++.+
T Consensus       278 ~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~---~~~~~~~~~~~~~~---~~~~~~~~  348 (401)
T 2bwn_A          278 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKAL--GM-PII---DHGSHIVPVVIGDP---VHTKAVSD  348 (401)
T ss_dssp             BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHH--TC-CBC---CCSSSCEEEECCCH---HHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHC--CC-ccc---CCCCCeEEEEeCCh---HHHHHHHH
Confidence            234668888888999887553   67788888889998888876  22 122   12356788877542   25778999


Q ss_pred             HHH-HCCeEeccCC-------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMK-ERGILAKPTH-------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~-~~Gi~v~~~~-------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|+ ++||.+++..       .+++|++++..++++++++++++|+++++
T Consensus       349 ~L~~~~gi~v~~~~~~~~~~~~~~iRis~~~~~t~~~i~~~~~~l~~~~~  398 (401)
T 2bwn_A          349 MLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLLWA  398 (401)
T ss_dssp             HHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHHC-
T ss_pred             HHHhcCCEEEeecCCCCCCCCCceEEEEeeCCCCHHHHHHHHHHHHHHHH
Confidence            996 7899997642       25899999988999999999999998876

>3nnk_A Ureidoglycine-glyoxylate aminotransferase; PLP-dependent; HET: LLP; 2.58A {Klebsiella pneumoniae}

Probab=99.96  E-value=7.1e-28  Score=227.42  Aligned_cols=288  Identities=17%  Similarity=0.129  Sum_probs=209.9

Q ss_pred             CcHHHHHHHHhcccCCC--e-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCc--ccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD--M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGR--TLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~--~~~~~~~~~~~~   95 (374)
                      +...+++++++++++.+  + +++++||++|++.+++.+     ..+|     |+|++.+++||+.  ...+...+.   
T Consensus        46 ~~~~~~~~~la~~~~~~~~~~v~~~~sgt~al~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~---  112 (411)
T 3nnk_A           46 HYMNEVMALYRGVFRTENRWTMLVDGTSRAGIEAILVSA-----IRPG-----DKVLVPVFGRFGHLLCEIARRCRA---  112 (411)
T ss_dssp             HHHHHHHHHHHHHHTCCCSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHHHHHHHHHTTC---
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCCcHHHHHHHHHHh-----cCCC-----CEEEEecCCchHHHHHHHHHHcCC---
Confidence            45678899999988654  3 789999999999999988     5667     9999999999873  222222111   


Q ss_pred             ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                                .+..++.+     |+++++++++++  +++++++++++|++|.+.+    +++|.++|++||+++|+||+
T Consensus       113 ----------~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea  176 (411)
T 3nnk_A          113 ----------EVHTIEVPWGEVFTPDQVEDAVKRI--RPRLLLTVQGDTSTTMLQP----LAELGEICRRYDALFYTDAT  176 (411)
T ss_dssp             ----------EEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECT
T ss_pred             ----------eEEEEecCCCCCCCHHHHHHHHhhC--CCeEEEEeCCCCCcceecc----HHHHHHHHHHcCCEEEEECC
Confidence                      12222222     899999999853  6889999999999999988    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-------------------------
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------------------------  223 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-------------------------  223 (374)
                      |+..   ...+...  ...+|++  +++|+++++. ++|+++.++++.+.+....                         
T Consensus       177 ~~~~---~~~~~~~--~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~g~~~~gg~~~~~~~~~~~  250 (411)
T 3nnk_A          177 ASLG---GNPLETD--VWGLDAVSAGMQKCLGGPS-GTSPITLSARMEEAIRRRKCVEEGIRTDAHRDGDEEMIYSNYFD  250 (411)
T ss_dssp             TTBT---TBCCCTT--TTTCSEEECCSTTTTCCCS-SEEEEEECHHHHHHHHTTCCCCGGGCCTTCCCCSSCCCSCSTTC
T ss_pred             cccC---Ccccchh--ccCCcEEEecCccccCCCC-ceEEEEECHHHHHHHhhcccccccccccccccccCCCCcccccc
Confidence            8721   1112222  2235665  5569988877 8899999998877665421                         


Q ss_pred             -----------CCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE
Q 017259          224 -----------HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE  289 (374)
Q Consensus       224 -----------~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~  289 (374)
                                 ....++.+..+++++.++++.+.++   ++.++++++.+++.+.|+++...+  ........+.++++.
T Consensus       251 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g~~~--~~~~~~~~~~~~~~~  328 (411)
T 3nnk_A          251 LGMVMDYWGPERLNHHTEATTALFGARECARLILQEGLDYGIARHKLHGDALVKGIQAMGLET--FGDLKHKMNNVLGVV  328 (411)
T ss_dssp             HHHHHHHHSTTCCCCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB--CSCGGGBCSSEEEEE
T ss_pred             hHHHHhhhccccCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcCCEe--CCCcccccccEEEEE
Confidence                       1122355778888888888876553   567778888888888887752111  111112246777877


Q ss_pred             eccCCCchhHHHHHHHHHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          290 FDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +++..   +..++.+.|.++ ||.++++    .++++||++ +...+++++++++++|+++++ ++
T Consensus       329 ~~~~~---~~~~l~~~l~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~~~i~~~~~~l~~~l~-~~  390 (411)
T 3nnk_A          329 IPQGI---NGDQARKLMLEDFGIEIGTSFGPLHGKVWRIGTMGYNARKDCVMTTLSALEAVLN-YL  390 (411)
T ss_dssp             CCTTC---CHHHHHHHHHHHHSEEEEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred             CCCCC---CHHHHHHHHHHhcCeEEeCccCCCCCCEEEEeCccCcCCHHHHHHHHHHHHHHHH-Hc
Confidence            76443   688999999887 9999875    367999997 777799999999999999998 65

>3ei9_A LL-diaminopimelate aminotransferase; lysine biosynthesis, pyridoxal 5' phosphat external aldimine, chloroplast, pyridox phosphate; HET: PL6; 1.55A {Arabidopsis thaliana} PDB: 3ei8_A* 3eib_A* 3ei6_A* 2z1z_A* 3ei5_A* 2z20_A* 3ei7_A 3eia_A*

Probab=99.96  E-value=2.3e-28  Score=232.64  Aligned_cols=319  Identities=11%  Similarity=0.063  Sum_probs=208.5

Q ss_pred             hHHHHHHHhccc--cC-cCCCCCcHHHHHHHHhccc------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE
Q 017259            2 KALQEQAEKLTL--SS-RAFYNDKFPVFAERLTSMF------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI   72 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~-~~~~~~~~~~l~~~l~~~~------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~   72 (374)
                      +|+.+++++...  .. .+.+.....++++.+++++      ..+++++++|+++++..+ ..+     ..+|     |+
T Consensus        76 ~a~~~~~~~~~~~~~~~~y~~~~g~~~l~~~ia~~~~~~~~~~~~~i~~t~G~~~al~~l-~~l-----~~~g-----d~  144 (432)
T 3ei9_A           76 SAMAKKAHELSTIEGYSGYGAEQGAKPLRAAIAKTFYGGLGIGDDDVFVSDGAKCDISRL-QVM-----FGSN-----VT  144 (432)
T ss_dssp             HHHHHHHHHTTSTTTCCCCCCTTCCHHHHHHHHHHHHTTTTCCGGGEEEESCHHHHHHHH-HHH-----HCTT-----CC
T ss_pred             HHHHHHHhcccccCCccCCCCCCCCHHHHHHHHHHHHccCCCCcceEEECCChHHHHHHH-HHH-----cCCC-----CE
Confidence            566666664322  11 2222345677778887764      456899999999999864 444     3567     99


Q ss_pred             EEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHH
Q 017259           73 IVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLK  152 (374)
Q Consensus        73 vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~  152 (374)
                      |++.+|+|+++...+........+.. ......++..+++++...+...+.+. ++++++++++++|++|.+. +.+.++
T Consensus       145 Vl~~~p~y~~~~~~~~~~g~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~v~l~~p~NPtG~~~-~~~~l~  221 (432)
T 3ei9_A          145 IAVQDPSYPAYVDSSVIMGQTGQFNT-DVQKYGNIEYMRCTPENGFFPDLSTV-GRTDIIFFCSPNNPTGAAA-TREQLT  221 (432)
T ss_dssp             EEEEESCCTHHHHHHHHHTCSCCEET-TTTEETTCEEEECCGGGTTSCCGGGC-CCCSEEEEESSCTTTCCCC-CHHHHH
T ss_pred             EEEeCCCCHHHHHHHHHcCCcccccc-cccccCceEEeccCcccCCcCChhhC-CCCCEEEEeCCCCCCCCCC-CHHHHH
Confidence            99999999987666554443221110 00000123333333111111112222 4678888888889999877 799999


Q ss_pred             HHHHHHHhcCCEEEEeccccCCcccccCcccccC-C---CCCcEEEeccccc-CCccchhhheeCHHH--------Hhhc
Q 017259          153 AVRDLCSKYNILMIADEIQSGLARSGRMLASDWE-E---VRPDMVILGKALG-GGVIPVSAVLADKEV--------MLCI  219 (374)
Q Consensus       153 ~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~-~---~~~d~~s~sK~~~-~G~~~~G~~~~~~~~--------~~~~  219 (374)
                      +|+++|++||++||+||+|+++...+........ +   ....+.|+||.++ +|+ |+||+++++++        .+.+
T Consensus       222 ~l~~la~~~~~~li~Dea~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-r~G~~~~~~~~~~~~~~~~~~~~  300 (432)
T 3ei9_A          222 QLVEFAKKNGSIIVYDSAYAMYMSDDNPRSIFEIPGAEEVAMETASFSNYAGFTGV-RLGWTVIPKKLLYSDGFPVAKDF  300 (432)
T ss_dssp             HHHHHHHHHTCEEEEECTTGGGCCSSCCSSGGGSTTGGGTEEEEEESHHHHCTTTT-CCEEEECCTTCBCTTSCBHHHHH
T ss_pred             HHHHHHHHcCcEEEEccchHhhccCCCCCChhhcCCCCCeEEEEecchhccCCccc-ceEEEEEChHHhhcchHHHHHHH
Confidence            9999999999999999999987544433222222 1   1123458999998 899 99999988776        4444


Q ss_pred             CCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc
Q 017259          220 QPGEHGSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP  296 (374)
Q Consensus       220 ~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~  296 (374)
                      ........++.+++++.++.+++.....   +++.++++++.+++.+.|++.     ++.......+.++|+.++..   
T Consensus       301 ~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~---  372 (432)
T 3ei9_A          301 NRIICTCFNGASNISQAGALACLTPEGLEAMHKVIGFYKENTNIIIDTFTSL-----GYDVYGGKNAPYVWVHFPNQ---  372 (432)
T ss_dssp             HHHHHHSCCCSCHHHHHHHHHHSSHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCEEECSSSSEEEEECTTS---
T ss_pred             HHHhccccCCCCHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHC-----CceecCCCcceEEEEECCCC---
Confidence            4322233456788999888888753111   245666667777777777654     22221223567888888743   


Q ss_pred             hhHHHHHHHHHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          297 VSAYDICLKMKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       297 ~~~~~~~~~l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       +..++++.|+++ ||.+.++      +.+++||+  +..+++++++++++|++--.
T Consensus       373 -~~~~~~~~ll~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~l~~~l~rl~~~~~  426 (432)
T 3ei9_A          373 -SSWDVFAEILEKTHVVTTPGSGFGPGGEGFVRVS--AFGHRENILEACRRFKQLYK  426 (432)
T ss_dssp             -CHHHHHHHHHHHHCEECEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHT
T ss_pred             -CHHHHHHHHHHHCCEEEeCchHhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHhh
Confidence             577888888865 9999874      26899999  56799999999999987654

>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus} PDB: 3b1c_A* 3b1e_A*

Probab=99.92  E-value=9.1e-31  Score=246.04  Aligned_cols=299  Identities=11%  Similarity=0.099  Sum_probs=201.5

Q ss_pred             CCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      .++++.+++++.+.+|    .+++++++|+++|++.+++++     ..+|     |+|++..|+||+....+...+....
T Consensus        69 ~~l~~~la~~l~~~~g~~~~~~~v~~~~g~~~a~~~~~~~~-----~~~g-----d~vl~~~p~~~~~~~~~~~~g~~~~  138 (392)
T 3b1d_A           69 DELLQAVLDWEKSEHQYSFDKEDIVFVEGVVPAISIAIQAF-----TKEG-----EAVLINSPVYPPFARSVRLNNRKLV  138 (392)
Confidence            3444555555554444    568999999999999999988     4556     9999999999998765544332211


Q ss_pred             ccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ..    +.....  -.+ .|++++++++++  ++++++++++++|++|.+. +++.+++|.++|++||++||+||+|+++
T Consensus       139 ~~----~~~~~~--g~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~-~~~~l~~l~~~~~~~~~~li~De~~~~~  209 (392)
T 3b1d_A          139 SN----SLKEEN--GLFQIDFEQLENDIVE--NDVKLYLLCNPHNPGGRVW-EREVLEQIGHLCQKHHVILVSDEIHQDL  209 (392)
Confidence            10    100000  000 267888888863  3577888888888888776 7889999999999999999999999988


Q ss_pred             cccccCc----cccc--CCCCCcEEEeccccc-CCccchhhheeCH-HHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHH
Q 017259          175 ARSGRML----ASDW--EEVRPDMVILGKALG-GGVIPVSAVLADK-EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVI  245 (374)
Q Consensus       175 ~~~g~~~----~~~~--~~~~~d~~s~sK~~~-~G~~~~G~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~~  245 (374)
                      .+.|..+    ....  .+..+.+.|+||.++ +|+ |+||+++++ ++++.+.......++ +.++++++++.++++..
T Consensus       210 ~~~g~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~  288 (392)
T 3b1d_A          210 TLFGHEHVSFNTVSPDFKDFALVLSSATKTFNIAGT-KNSYAIIENPTLCAQFKHQQLVNNHHEVSSLGYIATETAYRYG  288 (392)
Confidence            6655321    1111  233345669999998 898 999998865 488888765444443 45888888888888742


Q ss_pred             hh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE-EEEeccCCCchhHHHHHHHHH-HCCeEeccC-----
Q 017259          246 RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN-AVEFDKTALPVSAYDICLKMK-ERGILAKPT-----  316 (374)
Q Consensus       246 ~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~-~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~-----  316 (374)
                      .+  ++..++++++.+++.+.|++.   +|+ +....+.+.++ |+.++..  +.+..++++.|+ ++||.+.++     
T Consensus       289 ~~~~~~~~~~~~~~~~~l~~~l~~~---~~~-~~~~~~~~~~~~~i~~~~~--~~~~~~l~~~l~~~~gi~v~~g~~f~~  362 (392)
T 3b1d_A          289 KPWLVALKAVLEENIQFAVEYFAQE---APR-LKVMKPQGTYLIWLDFSDY--GLTDDALFTLLHDQAKVILNRGSDYGS  362 (392)
Confidence            11  133444455555555555441   222 22234444444 5676542  014678999997 789999875     


Q ss_pred             -CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 -HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 -~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       ..+++||++.  .+++++++++++|+++++
T Consensus       363 ~~~~~iRi~~~--~~~e~i~~~l~~l~~~l~  391 (392)
T 3b1d_A          363 EGELHARLNIA--APKSLVEEICKRIVCCLP  391 (392)
Confidence             2578999954  468899999999988775

>3zrp_A Serine-pyruvate aminotransferase (AGXT); HET: PLP; 1.75A {Sulfolobus solfataricus} PDB: 3zrq_A* 3zrr_A*

Probab=99.96  E-value=1.4e-27  Score=223.26  Aligned_cols=287  Identities=15%  Similarity=0.148  Sum_probs=209.1

Q ss_pred             CCcHHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCc
Q 017259           20 NDKFPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~   94 (374)
                      .+...+++++++++++.+    ++++++||++|++ ++..+     .++|     |+|++.+++||+...... ...+  
T Consensus        34 ~~~~~~~~~~la~~~~~~~~~~~v~~~~g~t~al~-~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g--  100 (384)
T 3zrp_A           34 VEALAYSLKGLRYVMGASKNYQPLIIPGGGTSAME-SVTSL-----LKPN-----DKILVVSNGVFGDRWEQIFKRYP--  100 (384)
T ss_dssp             HHHHHHHHHHHHHHHTCCTTSEEEEEESCHHHHHH-HGGGG-----CCTT-----CEEEEECSSHHHHHHHHHHTTSS--
T ss_pred             HHHHHHHHHHHHHHhCCCCCCcEEEEcCCcHHHHH-HHHhh-----cCCC-----CEEEEecCCcchHHHHHHHHHcC--
Confidence            456778899999988654    5999999999999 88766     5667     999999999987432211 1111  


Q ss_pred             cccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           95 EAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                                ..+..++.     .|+++++++++++  +++++++++++|++|.+.+    +++|.++|++||++||+|+
T Consensus       101 ----------~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~  164 (384)
T 3zrp_A          101 ----------VNVKVLRPSPGDYVKPGEVEEEVRKS--EYKLVALTHVETSTGVREP----VKDVINKIRKYVELIVVDG  164 (384)
T ss_dssp             ----------CEEEEECCSTTCCCCHHHHHHHHHHS--CEEEEEEESEETTTTEECC----HHHHHHHHGGGEEEEEEEC
T ss_pred             ----------CcEEEecCCCCCCCCHHHHHHHHHhC--CCcEEEEeCCCCCCceECc----HHHHHHHHHhcCCEEEEEC
Confidence                      11122222     2899999999853  6899999999999999998    9999999999999999999


Q ss_pred             cccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhc-CCCC---------------------CC
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCI-QPGE---------------------HG  225 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~-~~~~---------------------~~  225 (374)
                      +|+...   .....  ....+|++  |++|+++++. ++|++++++++.+.+ .+..                     ..
T Consensus       165 a~~~~~---~~~~~--~~~~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  238 (384)
T 3zrp_A          165 VSSVGA---EEVKA--EEWNVDVYLTASQKALGSAA-GLGLLLLSPKALSILDSQNSIAGYYLDLRNWLPVMRGAEEGKA  238 (384)
T ss_dssp             TTTTTT---SCCCT--TTTTCSEEEEETTSTTCCCS-SEEEEEECHHHHHHHHHCCCSCCSTTCHHHHHHHHHHHHTTCC
T ss_pred             cccccC---ccccc--cccCCCEEEecCcccccCCC-ceEEEEECHHHHHHhcCCCCCCcccccHHHHHHHHHhhcccCC
Confidence            997321   11111  22345665  5569998877 889999999887776 2100                     22


Q ss_pred             CCC-CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-e-EEEEeeeEEEEeccCCCchhH
Q 017259          226 STF-GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       226 ~~~-~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      ..+ +.+...+.++.++++.+...   ++.++++++.+++.+.|++..  + .... . ....+.++++.++..    +.
T Consensus       239 ~~~g~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~----~~  311 (384)
T 3zrp_A          239 AYFATPPVHVILQLAEAFRLIEKEGIENRIKRHTMVASAIRAGLEALG--L-EIVARRPESYSNTVTGVILKVA----DP  311 (384)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBSCSSGGGBCSSEEEEECSSS----CH
T ss_pred             CcCCCCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC--C-eEccCcccccCccEEEEECCCC----CH
Confidence            223 55777777777788776543   567777888888888887762  2 1111 1 112466777777653    68


Q ss_pred             HHHHHHHHHCCeEeccCC-C--CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          300 YDICLKMKERGILAKPTH-D--TIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~-~--~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++.+.|.++||.++++. .  +++|++++..++++++++++++|+++++ ++
T Consensus       312 ~~~~~~l~~~gi~v~~g~~~~~~~iRi~~~~~~~~e~i~~~~~~l~~~l~-~~  363 (384)
T 3zrp_A          312 QKVLAGTVNEGVEFAPGVHPAFKYFRIGHMGWVTPNDAIIAISVIERTLR-KL  363 (384)
T ss_dssp             HHHHHHHHTTTCCCEECCCTTCCEEEEECCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHCCEEEecCCCCCcCEEEEeccccCCHHHHHHHHHHHHHHHH-Hc
Confidence            899999999999998764 1  7899999888999999999999999998 65

>1t3i_A Probable cysteine desulfurase; PLP-binding enzyme, transferase; HET: 2OS PLP; 1.80A {Synechocystis SP} SCOP: c.67.1.3

Probab=99.96  E-value=2.2e-27  Score=224.61  Aligned_cols=294  Identities=14%  Similarity=0.138  Sum_probs=205.0

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc----ccccCC
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA----ISMSCD   93 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~----~~~~~~   93 (374)
                      +...++++.++++++.   +++++++||++|++.+++++.... ..+|     |+|++.+++||+.....    ...+..
T Consensus        72 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~~g~~  145 (420)
T 1t3i_A           72 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN-LKAG-----DEIITTVMEHHSNLVPWQMVAAKTGAV  145 (420)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHHHHcCCCCCCeEEEcCChHHHHHHHHHHhhhcc-cCCC-----CEEEECcchhHHHHHHHHHHHHhcCcE
Confidence            5577899999999887   789999999999999999883211 3456     99999999999853211    111111


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...    .+...+..    .|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|+.
T Consensus       146 ~~~----v~~~~~~~----~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~~  210 (420)
T 1t3i_A          146 LKF----VQLDEQES----FDLEHFKTLLS---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQSA  210 (420)
T ss_dssp             EEE----ECBCTTSS----BCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred             EEE----eccCCCCC----cCHHHHHHhhC---CCceEEEEeCCcccccCcCC----HHHHHHHHHHcCCEEEEEhhhcc
Confidence            111    01101110    27899998886   47899999999999999998    99999999999999999999983


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCC--------------------CCCCC
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--------------------TFGGN  231 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~--------------------~~~~~  231 (374)
                      . ..  .+....+  .+|++  |+||.++ +. ++|++++++++.+.+.......                    ..+.+
T Consensus       211 ~-~~--~~~~~~~--~~di~~~s~sK~~~-~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (420)
T 1t3i_A          211 P-HY--PLDVQLI--DCDWLVASGHKMCA-PT-GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTP  283 (420)
T ss_dssp             T-TS--CCCHHHH--TCSEEEEEGGGTTS-CT-TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSC
T ss_pred             C-Cc--cCchhhc--CCCEEEEehhhhcC-CC-ceEEEEEchHHHhhcCceecCCCccccccccccCCCCchhhccCCCc
Confidence            2 11  1111222  35665  5669554 44 5788999999988887543221                    12345


Q ss_pred             HHHHHHHHH-HHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-----EEeeeEEEEeccCCCchhHHHH
Q 017259          232 PLASAVAIA-SLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----GRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       232 ~~~~~aa~~-al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      .+.+.++.. +++.+.+   +++.++.+++.+++.+.|+++    +++....+     ..+.++++.++..    +..++
T Consensus       284 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~  355 (420)
T 1t3i_A          284 AIAEAIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQI----PQLRLYGPNPKHGDRAALASFNVAGL----HASDV  355 (420)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTC----TTEEEESCCGGGSCBCSEEEEEETTB----CHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHhC----CCeEEeCCCccccccCCEEEEEECCC----CHHHH
Confidence            566655554 6776654   345666666777777666553    22221111     1377778777642    57789


Q ss_pred             HHHHHHCCeEeccC-----------C-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          303 CLKMKERGILAKPT-----------H-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~-----------~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .+.|.++||.++++           + .+++|++++..++++++++++++|+++++ .+.+
T Consensus       356 ~~~l~~~gi~v~~~~~~~~~~~~~~g~~~~iRis~~~~~~~~~i~~~~~~l~~~~~-~~~~  415 (420)
T 1t3i_A          356 ATMVDQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR-FFSD  415 (420)
T ss_dssp             HHHHHTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH-HTC-
T ss_pred             HHHHHHCCeEEeeccccchHHHHhcCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-HhcC
Confidence            99999999999886           2 67999999888899999999999999998 6643

>1vjo_A Alanine--glyoxylate aminotransferase; 17130350, ALR1004, STR genomics, JCSG, PSI, protein structure initiative, joint CE structural genomics; HET: PLP; 1.70A {Nostoc SP} SCOP: c.67.1.3

Probab=99.96  E-value=2e-27  Score=223.10  Aligned_cols=289  Identities=15%  Similarity=0.128  Sum_probs=209.6

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCC--cccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG--RTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg--~~~~~~~~~~~~~   95 (374)
                      +.++++++++++++|.+   ++++|+||++|++.+++++     ..+|     |+|++.+|+|++  ....+...+....
T Consensus        67 ~~~~~~~~~la~~~g~~~~~~v~~t~g~t~al~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~~~~  136 (393)
T 1vjo_A           67 ALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA-----VEPG-----DVVLIGVAGYFGNRLVDMAGRYGADVR  136 (393)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCchHHHHHHHHHhc-----cCCC-----CEEEEEcCChhHHHHHHHHHHcCCceE
Confidence            56778999999988654   7999999999999999988     4567     999999999988  3332222221111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+.    ..|+++|+++++++  +++++++++++|++|.+.+    +++|.++|++||++||+||+|+ ++
T Consensus       137 ~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~-~g  201 (393)
T 1vjo_A          137 TI----SKPWGE----VFSLEELRTALETH--RPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-LG  201 (393)
T ss_dssp             EE----ECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-TT
T ss_pred             EE----ecCCCC----CCCHHHHHHHHhhC--CceEEEEeccCCCcceecc----HHHHHHHHHHcCCEEEEECCcc-cc
Confidence            10    110100    13899999999853  5778999999999999987    9999999999999999999998 53


Q ss_pred             ccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCC-------CC------------CCCC-CCCHH
Q 017259          176 RSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPG-------EH------------GSTF-GGNPL  233 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~-------~~------------~~~~-~~~~~  233 (374)
                      ..  .  .......+|+++  +||+++++. |+|++++++++.+.+...       ..            ...+ +.+.+
T Consensus       202 ~~--~--~~~~~~~~di~~~s~sK~l~~~~-~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~  276 (393)
T 1vjo_A          202 GV--P--IFLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAPIN  276 (393)
T ss_dssp             TS--C--CCTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCCHH
T ss_pred             Cc--C--CcccccCccEEEEcCcccccCCC-ceEEEEECHHHHHHHhccCCCCCceecCcHhhhhhhccCCCCCCCCCHH
Confidence            22  1  122234567774  559999887 899999999888776321       10            2234 67889


Q ss_pred             HHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE--EeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          234 ASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG--RGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       234 ~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~--~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      +++++.++++.+.+   +++.++++++.+++.+.|+++  .++ +.. ..+  .+.++++.++...   +..++.+.|.+
T Consensus       277 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~  349 (393)
T 1vjo_A          277 LYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDI--GLS-LHV-EKEYRLPTLTTVCIPDGV---DGKAVARRLLN  349 (393)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TCC-BSS-CGGGBCSSEEEEECCTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc--CCc-ccC-CccccCCcEEEEEcCCCC---CHHHHHHHHHh
Confidence            99999999987644   256778888888888888775  221 221 111  2456677665433   67889999998


Q ss_pred             C-CeEeccCC----CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259          309 R-GILAKPTH----DTIVRLTP-PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~-Gi~v~~~~----~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      + ||.++++.    .+++||++ ++..+++++++++++|+++++
T Consensus       350 ~~gi~v~~g~~~~~~~~iRis~~~~~~~~~~i~~~~~~l~~~l~  393 (393)
T 1vjo_A          350 EHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  393 (393)
T ss_dssp             HHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             hCCEEEecCccccCCCEEEEeCCccCChHHHHHHHHHHHHHHhC
Confidence            8 99998763    68999994 566688889999999998763

>3asa_A LL-diaminopimelate aminotransferase; PLP dependent aminotransferase; 2.05A {Chlamydia trachomatis} PDB: 3asb_A*

Probab=99.95  E-value=2.7e-28  Score=229.81  Aligned_cols=305  Identities=12%  Similarity=0.105  Sum_probs=204.4

Q ss_pred             hHHHHHHHhcccc--CcCC-CCCcHHHHHHHHhcc--cC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEE
Q 017259            2 KALQEQAEKLTLS--SRAF-YNDKFPVFAERLTSM--FG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAII   73 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~~~~-~~~~~~~l~~~l~~~--~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~v   73 (374)
                      +++.+++++....  ...| +.....++++.++++  .|   .+++++++|++++++.++.++      .+|     |+|
T Consensus        53 ~a~~~~~~~~~~~~~~~~y~~~~g~~~lr~~la~~l~~g~~~~~~v~~~~G~~~al~~~~~~~------~~g-----d~V  121 (400)
T 3asa_A           53 EAFASSIARLSSPTTCRGYGPDFGLPALRQKLSEDFYRGFVDAKEIFISDGAKVDLFRLLSFF------GPN-----QTV  121 (400)
T ss_dssp             HHHHHHHHHHTSSSCCCCCCCTTCCHHHHHHHHHTTSTTSSCGGGEEEESCHHHHHHHHHHHH------CSS-----CEE
T ss_pred             HHHHHHHhcccccccccCCCCCCCCHHHHHHHHHHHHcCCCCHHHEEEccChHHHHHHHHHHc------CCC-----CEE
Confidence            4566666553221  1113 345678899999988  45   568999999999999865433      356     999


Q ss_pred             EEeccCCCCcccccccccCCccccccCCCCCCCceeccCCC----HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChh
Q 017259           74 VSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGD----ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG  149 (374)
Q Consensus        74 i~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d----~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~  149 (374)
                      ++..|+|++....+...+...            +..++.++    ..++++    . ++++++++++++|++|.+. +.+
T Consensus       122 l~~~p~y~~~~~~~~~~g~~~------------~~~~~~~~~~~~~~~l~~----~-~~~~~v~l~~p~nptG~~~-~~~  183 (400)
T 3asa_A          122 AIQDPSYPAYLDIARLTGAKE------------IIALPCLQENAFFPEFPE----D-THIDILCLCSPNNPTGTVL-NKD  183 (400)
T ss_dssp             EEEESCCHHHHHHHHHTTCSE------------EEEEECCGGGTTCCCCCT----T-CCCSEEEEESSCTTTCCCC-CHH
T ss_pred             EECCCCcHHHHHHHHHcCCcc------------eEecccchhcCcccChhh----c-cCccEEEEeCCCCCCCCcC-CHH
Confidence            999999988765443332210            11111110    001111    1 3678888888888999776 799


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCCccccc-CcccccCCCCCc----EEEeccccc-CCccchhhheeCHHH-------H
Q 017259          150 YLKAVRDLCSKYNILMIADEIQSGLARSGR-MLASDWEEVRPD----MVILGKALG-GGVIPVSAVLADKEV-------M  216 (374)
Q Consensus       150 ~l~~l~~l~~~~~i~li~Dea~~~~~~~g~-~~~~~~~~~~~d----~~s~sK~~~-~G~~~~G~~~~~~~~-------~  216 (374)
                      ++++|.++|++||++||+||+|+++.+.+. ......++..++    +.|+||.++ +|+ |+||+++++++       +
T Consensus       184 ~l~~l~~~~~~~~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~g~~Gl-riG~~~~~~~~~~~~~~~~  262 (400)
T 3asa_A          184 QLRAIVHYAIEHEILILFDAAYSTFISDPSLPKSIFEIPDARFCAIEINSFSKPLGFAGI-RLGWTVIPQELTYADGHFV  262 (400)
T ss_dssp             HHHHHHHHHHHTTCEEEEECTTGGGCCCTTSCSSGGGSTTGGGTEEEEEECCGGGTTTTC-CCEEEECCTTCBCTTSCBH
T ss_pred             HHHHHHHHHHHcCCEEEEEchhhhhhcCCCCCCchhhCCCCCCceEEEecchhhcCCcch-heeEEeeChhhccchhhhH
Confidence            999999999999999999999998765543 122222221123    459999998 898 99999988876       4


Q ss_pred             hhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE-eccCC
Q 017259          217 LCIQPGEHGSTF-GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE-FDKTA  294 (374)
Q Consensus       217 ~~~~~~~~~~~~-~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-~~~~~  294 (374)
                      +.+.......++ +.+.+++.++.++++....+++.++++++++++.+.|++.     ++.......+.++|+. ++...
T Consensus       263 ~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~  337 (400)
T 3asa_A          263 IQDWERFLSTTFNGASIPAQEAGVAGLSILPQLEAIHYYRENSDLLRKALLAT-----GFEVFGGEHAPYLWVKPTQANI  337 (400)
T ss_dssp             HHHHHHHHHHHCCCCCHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHT-----TCEEEECSSSSEEEEECCCTTC
T ss_pred             HHHHHHHhccCccCCChHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHC-----CCeeeCCCCceEEEEeccCCCC
Confidence            443221122234 5789999988888876433466788888888888887764     2221111246788888 65432


Q ss_pred             CchhHHHHHHHHHHC-CeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          295 LPVSAYDICLKMKER-GILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       295 ~~~~~~~~~~~l~~~-Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                         +..++.+.|+++ ||.+.++.      .+++||+  +..+++++++++++|+++++
T Consensus       338 ---~~~~~~~~l~~~~gv~v~~g~~f~~~~~~~iRis--~~~~~e~i~~~l~~l~~~~~  391 (400)
T 3asa_A          338 ---SDRDLFDFFLREYHIAITPGIGFGRSGSGFVRFS--SLGKREDILAACERLQMAPA  391 (400)
T ss_dssp             ---CTTTHHHHHHHHHSEECEEGGGGCGGGTTCEEEE--CCSCHHHHHHHHHHHHC---
T ss_pred             ---CHHHHHHHHHHhCCEEEeChhHhCCCCCCEEEEE--eeCCHHHHHHHHHHHHHHHH
Confidence               455788888754 99998752      5789999  56899999999999998887

>1m32_A 2-aminoethylphosphonate-pyruvate aminotransferase; PLP-dependent aminotransferase fold; HET: PLP; 2.20A {Salmonella typhimurium} SCOP: c.67.1.3

Probab=99.95  E-value=1.1e-26  Score=215.65  Aligned_cols=291  Identities=15%  Similarity=0.158  Sum_probs=209.0

Q ss_pred             CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc-c-cccccCCc
Q 017259           21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL-A-AISMSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~-~-~~~~~~~~   94 (374)
                      +...+++++++++++.    +++++++||++|++.+++++     ..+|     |+|++.++.||+... . +...+...
T Consensus        37 ~~~~~l~~~la~~~g~~~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g~~~  106 (366)
T 1m32_A           37 GVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA-----LGPQ-----DKVLIVSNGAYGARMVEMAGLMGIAH  106 (366)
T ss_dssp             TTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-----CCTT-----CCEEEEESSHHHHHHHHHHHHHTCCE
T ss_pred             HHHHHHHHHHHHHhCCCCcCcEEEEecChHHHHHHHHHHh-----cCCC-----CeEEEEeCCCccHHHHHHHHHhCCce
Confidence            6788999999998873    26999999999999999988     4556     888888766666422 1 11111111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...    ....|+++|+++++++ ++++++++.+++|++|.+.+    +++|.++|++||++||+||+|+..
T Consensus       107 ~~v----~~~~----~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~~  173 (366)
T 1m32_A          107 HAY----DCGE----VARPDVQAIDAILNAD-PTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMSSFG  173 (366)
T ss_dssp             EEE----ECCT----TSCCCHHHHHHHHHHC-TTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTTTTT
T ss_pred             EEE----eCCC----CCCCCHHHHHHHHhcC-CCeEEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEECCcccc
Confidence            110    1100    0113899999999864 34778888888889999998    999999999999999999999732


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC------------------CCCCCCHHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG------------------STFGGNPLA  234 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~  234 (374)
                       ..  .+..  ....+|++  |+||+++++. ++|++++++++.+.+......                  ..++.+.++
T Consensus       174 -~~--~~~~--~~~~~di~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  247 (366)
T 1m32_A          174 -GI--PMDI--AALHIDYLISSANKCIQGVP-GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSPTHT  247 (366)
T ss_dssp             -TS--CCCT--TTTTCSEEEEESSSTTCCCS-SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCCHHH
T ss_pred             -Cc--Cccc--cccCccEEEecCcccccCCC-ceEEEEECHHHHHhhcCCCCCccccHHHHHhhhcccCCCCCCCCCHHH
Confidence             21  1111  12345665  6789998776 789999999988877643111                  135778888


Q ss_pred             HHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEecc--CCCchhHHHHHHHHH
Q 017259          235 SAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDK--TALPVSAYDICLKMK  307 (374)
Q Consensus       235 ~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~--~~~~~~~~~~~~~l~  307 (374)
                      ++++.++++.+.+.    ++.++++++.+++.+.|+++  .+ ...... ...+.++++.+++  ..   +..++.+.|.
T Consensus       248 ~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~--~~-~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~  321 (366)
T 1m32_A          248 VLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRAL--GF-NTLLDDELHSPIITAFYSPEDPQY---RFSEFYRRLK  321 (366)
T ss_dssp             HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSCGGGBCSSEEEEECCCCTTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHhHHHHHHHHHHHHHHHHHHHC--CC-eeccCchhcCceEEEEEcCccCCC---CHHHHHHHHH
Confidence            88888888876543    36677777888888888765  22 121110 1245578887764  22   6789999999


Q ss_pred             HCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||.++++   ..+++|++++...+++++++++++|+++++
T Consensus       322 ~~gi~v~~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  363 (366)
T 1m32_A          322 EQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY  363 (366)
T ss_dssp             HTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             HCCEEEECCcCCCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            999999886   368999999988899999999999998876

>3f0h_A Aminotransferase; RER070207000802, structural genomics, JOIN for structural genomics, JCSG; HET: MSE LLP; 1.70A {Eubacterium rectale}

Probab=99.95  E-value=3.5e-27  Score=220.09  Aligned_cols=288  Identities=14%  Similarity=0.115  Sum_probs=194.8

Q ss_pred             CcHHHHHHHHhcccCCC---eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD---MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~   95 (374)
                      +..++++++++++++.+   ++ ++++||++|++.+++.+     .++|     |+|++..++|++...... ...+   
T Consensus        52 ~~~~~~~~~la~~~g~~~~~~~i~~~~ggt~al~~~~~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~g---  118 (376)
T 3f0h_A           52 STMLENEKFMLEYAKAPEGSKAVFMTCSSTGSMEAVVMNC-----FTKK-----DKVLVIDGGSFGHRFVQLCEIHE---  118 (376)
T ss_dssp             HHHHHHHHHHHHHHTCCTTCEEEEESSCHHHHHHHHHHHH-----CCTT-----CCEEEEESSHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCChhHHHHHHHHhc-----cCCC-----CeEEEEeCChhhHHHHHHHHHcC---
Confidence            55677889999987654   44 55899999999999988     5667     999999988877542211 1111   


Q ss_pred             ccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                               ..+..++.     .|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++
T Consensus       119 ---------~~~~~v~~~~~~~~d~~~l~~~~~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~  182 (376)
T 3f0h_A          119 ---------IPYVALKLEHGKKLTKEKLYEYDN---QNFTGLLVNVDETSTAVLYD----TMMIGEFCKKNNMFFVCDCV  182 (376)
T ss_dssp             ---------CCEEEEECCTTCCCCHHHHHTTTT---SCCCEEEEESEETTTTEECC----HHHHHHHHHHTTCEEEEECT
T ss_pred             ---------CceEEEeCCCCCCCCHHHHHHhhc---cCceEEEEecccCCcceecC----HHHHHHHHHHcCCEEEEEcC
Confidence                     11111111     27888888664   57899999999999999998    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC-----------------CCCCCCCHH
Q 017259          171 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH-----------------GSTFGGNPL  233 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~  233 (374)
                      |+....   .+....++.+..+.+++|+++++. ++|+++.++++.+.+.....                 ...+..+..
T Consensus       183 ~~~~~~---~~~~~~~~~d~~~~s~~K~l~~~~-G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (376)
T 3f0h_A          183 SAFLAD---PFNMNECGADVMITGSQKVLACPP-GISVIVLAPRGVERVEKSKVRTMYFDLKDALKNQERGQTPFTPAVG  258 (376)
T ss_dssp             TTTTTS---CCCHHHHTCSEEEEETTTTTCCCS-SCEEEEECHHHHHHHHTCCCCCSTTCHHHHHHHHTTTCCSSCCCHH
T ss_pred             ccccCc---cccccccCccEEEecCcccccCCC-ceEEEEECHHHHHHhhcCCCCceeecHHHHHhhcccCCCCCCCcHH
Confidence            985432   122222333333457779998766 77888899988877754211                 123455666


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHC-Ce
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKER-GI  311 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi  311 (374)
                      +++++.++++.+.+++..+.+.++...+++.+.+....+ ++... ....+.++.+. +...   +..++.+.|.++ ||
T Consensus       259 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~-~~~~---~~~~l~~~l~~~~gi  333 (376)
T 3f0h_A          259 ILLQINERLKEIKKHGGADAEVARIASQAADFRAKIKDL-PFELVSESPANGVTSVH-PTTA---NAYDIFLKLKDEYGI  333 (376)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHTTTS-SEEECCSSBBTTEEEEE-ESSS---CHHHHHHHHHHHSSE
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHc-CCccCccccCceEEEEe-CCCC---CHHHHHHHHHHhCCE
Confidence            667777788776554223333344444444443333222 22111 11123333333 3222   678999999998 99


Q ss_pred             EeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          312 LAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       312 ~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++++.    .+++|++++..++++++++++++|+++++
T Consensus       334 ~v~~g~~~~~~~~lRis~~~~~t~e~i~~~~~~l~~~l~  372 (376)
T 3f0h_A          334 WICPNGGEMKDTIFRVGHIGALTHEDNTTLVNAFKDLQK  372 (376)
T ss_dssp             ECEECCGGGTTTCEEEECCSSCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCccccCCCEEEEecCCCCCHHHHHHHHHHHHHHHH
Confidence            998753    58999999989999999999999999987

>2q7w_A Aspartate aminotransferase; mechanism-based inhibitor, PLP, sadta, PH dependence; HET: KST PSZ PMP GOL; 1.40A {Escherichia coli} SCOP: c.67.1.1 PDB: 2qa3_A* 2qb2_A* 2qb3_A* 2qbt_A* 3qn6_A* 3pa9_A* 1aaw_A* 1amq_A* 1ams_A* 1arg_A* 1amr_A* 1art_A* 1asa_A* 1asd_A* 1ase_A* 1asl_A* 1asm_A* 1asn_A* 1c9c_A* 1cq6_A* ...

Probab=99.95  E-value=2.5e-28  Score=229.52  Aligned_cols=290  Identities=12%  Similarity=0.085  Sum_probs=193.7

Q ss_pred             CCCcHHHHHHHHhccc---C-----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259           19 YNDKFPVFAERLTSMF---G-----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~---~-----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +.+...++++.+++++   +     .+++++  |+||++|++.+++++..   ..+|     |+|++..|+|+++...+.
T Consensus        67 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~---~~~g-----d~Vl~~~p~y~~~~~~~~  138 (396)
T 2q7w_A           67 GIDGIPEFGRCTQELLFGKGSALINDKRARTAQTPGGTGALRVAADFLAK---NTSV-----KRVWVSNPSWPNHKSVFN  138 (396)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HSCC-----CEEEEEESCCTHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCccccccEEEEecccchhhHHHHHHHHHH---hCCC-----CEEEEcCCCchhHHHHHH
Confidence            3455667777777765   2     578988  99999999999987753   2366     999999999998776655


Q ss_pred             cccCCccccccCCCCCCCceeccC---C----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDF---G----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~---~----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      ..+..             +..++.   +    |++++++++++++++++++++++++|++|.+. +.+++++|.++|++|
T Consensus       139 ~~g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~  204 (396)
T 2q7w_A          139 SAGLE-------------VREYAYYDAENHTLDFDALINSLNEAQAGDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEK  204 (396)
T ss_dssp             HTTCE-------------EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHH
T ss_pred             HcCCc-------------eEEEecccCCCCCcCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHC
Confidence            44322             122222   1    79999999986544578888888999999766 799999999999999


Q ss_pred             CCEEEEeccccCCcccc--cCcccccCC-CCCc---EEEeccccc-CCccchhhhee---CH----HHHhhcCCCCCCCC
Q 017259          162 NILMIADEIQSGLARSG--RMLASDWEE-VRPD---MVILGKALG-GGVIPVSAVLA---DK----EVMLCIQPGEHGST  227 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g--~~~~~~~~~-~~~d---~~s~sK~~~-~G~~~~G~~~~---~~----~~~~~~~~~~~~~~  227 (374)
                      |++||+||+|+++.+.+  .......+. ..++   +.|+||.++ +|+ |+||+++   ++    ++.+.+........
T Consensus       205 ~~~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (396)
T 2q7w_A          205 GWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVASSYSXNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANY  283 (396)
T ss_dssp             TCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTT
T ss_pred             CCEEEEecccccccCCccchhHHHHHHHhcCCcEEEEEecccccccccc-ccceEEEEcCCHHHHHHHHHHHHHHHhhcc
Confidence            99999999999886543  222222111 1122   448999999 799 9999886   55    34444432111222


Q ss_pred             CCCCHHHHHHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhH
Q 017259          228 FGGNPLASAVAIASLDVI------RD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~------~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      ...+++++.++.++++..      .+  ++..++++++++++.+.|++..... .+....+..+.++|+.+       ..
T Consensus       284 ~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~  355 (396)
T 2q7w_A          284 SNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQRMRQLFVNTLQEKGANR-DFSFIIKQNGMFSFSGL-------TK  355 (396)
T ss_dssp             SSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHHHHHHHHHHHHHTTCCS-CCTHHHHCCSSEEECCC-------CH
T ss_pred             CCCCcHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CcceecCCCceEEEecC-------CH
Confidence            345888888888887543      01  1334555566666666665542100 01111122344545432       23


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ..+.+.|.++||.+.++    +||+++.. +++++++++++|+++
T Consensus       356 ~~~~~~l~~~gv~v~~~----~Ris~~~~-~~e~i~~~~~~l~~~  395 (396)
T 2q7w_A          356 EQVLRLREEFGVYAVAS----GRVNVAGM-TPDNMAPLCEAIVAV  395 (396)
T ss_dssp             HHHHHHHHHHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCeeecCC----ceEEEeec-CHHHHHHHHHHHHhc
Confidence            45666677889999875    69998743 899999999999875

>1ajs_A Aspartate aminotransferase; PIG, in the presence of ligand 2-methylaspartate; HET: LLP PLA; 1.60A {Sus scrofa} SCOP: c.67.1.1 PDB: 1ajr_A* 3ii0_A* 1aat_A 2cst_A*

Probab=99.95  E-value=8.2e-28  Score=227.31  Aligned_cols=304  Identities=11%  Similarity=0.105  Sum_probs=200.5

Q ss_pred             CCCcHHHHHHHHhccc-C-------CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259           19 YNDKFPVFAERLTSMF-G-------YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~-~-------~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +.....++++.+++++ +       .+++++  |+||++|++.+++++..   ..+|.+..+|+|++..|+|+++...+.
T Consensus        72 ~~~g~~~lr~~la~~~~~~~~~~~~~~~v~~~~t~gg~~a~~~~~~~~~~---~~~g~~~~~d~Vl~~~p~y~~~~~~~~  148 (412)
T 1ajs_A           72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLAR---WYNGTNNKDTPVYVSSPTWENHNGVFT  148 (412)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HSSSSSCCCSCEEEEESCCTHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhcCCCCccCCCcEEEEECCCcHHHHHHHHHHHHH---hCcCcCCCCCeEEEcCCCcHHHHHHHH
Confidence            3455677777777766 3       478999  99999999999875532   122211112789999999998766555


Q ss_pred             cccCC-ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           89 SMSCD-NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        89 ~~~~~-~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                      ..+.. ........+  .+..    .|++++++++++++++++++++++++|++|.+. +.+++++|.++|++||++||+
T Consensus       149 ~~g~~~~~~~~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~~li~  221 (412)
T 1ajs_A          149 TAGFKDIRSYRYWDT--EKRG----LDLQGFLSDLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPFF  221 (412)
T ss_dssp             HTTCSCEEEEECEET--TTTE----ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred             HcCCceeEEEeeecC--CCCc----cCHHHHHHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEE
Confidence            44332 111100000  0011    179999999987555788888888899999765 899999999999999999999


Q ss_pred             eccccCCcccc---cCcccccC-CCCCc---EEEecccccC-Cccchhhhee---CHH----HHhhcCCCCCCCCCC-CC
Q 017259          168 DEIQSGLARSG---RMLASDWE-EVRPD---MVILGKALGG-GVIPVSAVLA---DKE----VMLCIQPGEHGSTFG-GN  231 (374)
Q Consensus       168 Dea~~~~~~~g---~~~~~~~~-~~~~d---~~s~sK~~~~-G~~~~G~~~~---~~~----~~~~~~~~~~~~~~~-~~  231 (374)
                      ||+|+++++.|   .......+ ...++   +.|+||.+++ |+ |+||+++   +++    +.+.+... ...++. .+
T Consensus       222 De~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  299 (412)
T 1ajs_A          222 DSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKI-VRVTWSNPP  299 (412)
T ss_dssp             EESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHH-HHTTTSSCC
T ss_pred             EcccccccCCcccccchHHHHHhccCCcEEEEEecccccCCCCc-ceEEEEEecCCHHHHHHHHHHHHHH-HhcccCCCC
Confidence            99999887654   32222211 11222   4589999997 99 9999998   776    33333321 223444 58


Q ss_pred             HHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCC-CceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          232 PLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFP-NYVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       232 ~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      ++++.++.++++...        .++..++++++++++.+.|+++..  | .+....+..+.+.|+.+       ....+
T Consensus       300 ~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~--~~~~~~~~~~~~~~~~~~~-------~~~~~  370 (412)
T 1ajs_A          300 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKT--PGTWNHITDQIGMFSFTGL-------NPKQV  370 (412)
T ss_dssp             SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC--SSCCHHHHHCCSSEEECCC-------CHHHH
T ss_pred             hHHHHHHHHHHcCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCC--CCCeeEEcCCCceEEEeCC-------CHHHH
Confidence            889998888887542        124556666667777776665420  0 01111122344444322       23445


Q ss_pred             HHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ...+.++||.+.++    +||+++. .+++++++++++|+++++ ++
T Consensus       371 ~~~l~~~gv~v~~~----~Ris~~~-~~~~~i~~~~~~l~~~l~-~~  411 (412)
T 1ajs_A          371 EYLINQKHIYLLPS----GRINMCG-LTTKNLDYVATSIHEAVT-KI  411 (412)
T ss_dssp             HHHHHTTCEECCTT----SEEEGGG-CCTTTHHHHHHHHHHHHH-HC
T ss_pred             HHHHHhCCEEecCC----cEEEeee-CCHHHHHHHHHHHHHHHH-hc
Confidence            55566789999975    5999763 489999999999999987 54

>3fkd_A L-threonine-O-3-phosphate decarboxylase; structural genomic, , structural genomics, PSI-2, protein structure initiative; 2.50A {Porphyromonas gingivalis}

Probab=99.95  E-value=1.2e-26  Score=214.48  Aligned_cols=280  Identities=14%  Similarity=0.066  Sum_probs=197.3

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+.+...+++++++++++.  +++++|+|++++++.+++++     .  |     |+|++..|+|++....+...+.   
T Consensus        47 y~~~~~~~lr~~la~~~~~~~~~i~~t~g~~~al~~~~~~l-----~--g-----d~Vi~~~p~~~~~~~~~~~~g~---  111 (350)
T 3fkd_A           47 YPEPDAGTLRQMLAKRNSVDNNAILVTNGPTAAFYQIAQAF-----R--G-----SRSLIAIPSFAEYEDACRMYEH---  111 (350)
T ss_dssp             CCCTTCHHHHHHHHHHTTCCGGGEEEESHHHHHHHHHHHHT-----T--T-----CEEEEEESCCHHHHHHHHHTTC---
T ss_pred             CCCCcHHHHHHHHHHHhCcCHHHEEEcCCHHHHHHHHHHHH-----C--C-----CEEEEeCCCcHHHHHHHHHcCC---
Confidence            4455558899999998865  48999999999999999877     3  6     9999999999887655444332   


Q ss_pred             ccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                                .+..++. ++.+.+..      ++++++++++++|++|.+.+ .+.+++|+++|++  .+||+||+|+++
T Consensus       112 ----------~~~~v~~~~~~~~~~~------~~~~~v~i~~p~nptG~~~~-~~~l~~l~~~~~~--~~li~Dea~~~~  172 (350)
T 3fkd_A          112 ----------EVCFYPSNEDIGEADF------SNMDFCWLCNPNNPDGRLLQ-RTEILRLLNDHPD--TTFVLDQSYVSF  172 (350)
T ss_dssp             ----------EEEEEETTSCGGGSCC------TTCSEEEEESSCTTTCCCCC-HHHHHHHHHHCTT--SEEEEECTTTTS
T ss_pred             ----------eEEEEecCCccccCcc------CCCCEEEEeCCCCCcCCCCC-HHHHHHHHHhCCC--CEEEEECchhhh
Confidence                      2233333 22111110      46788888889999998885 4445555555544  499999999987


Q ss_pred             cccccCcccc--cCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcH
Q 017259          175 ARSGRMLASD--WEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKL  250 (374)
Q Consensus       175 ~~~g~~~~~~--~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~  250 (374)
                      .+.+......  ..+....+.|+||.++ +|+ |+||+++++++.+.+....  .+++.+++++.++.++++.... .+.
T Consensus       173 ~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-r~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~  249 (350)
T 3fkd_A          173 TTEEVIRPADIKGRKNLVMVYSFSHAYGIPGL-RIGYIVANKDFMKRVAAFS--TPWAVNALAIEAAKFILIHPAQFTLP  249 (350)
T ss_dssp             CSSCCCCGGGGTTCSSEEEEEESHHHHSCGGG-CCEEEECCHHHHHHHHTTC--CTTCSCHHHHHHHHHHHHCTTTTCCC
T ss_pred             ccCcchhhHHhhcCCCEEEEecCchhccCcch-heEeEEeCHHHHHHHHHhC--CCCCCCHHHHHHHHHHHhCHHHHHHH
Confidence            6655432211  1111223448999999 788 9999999999988887543  4577899999999988875431 122


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH-CCeEeccCC------CCEEEE
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE-RGILAKPTH------DTIVRL  323 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~------~~~lRi  323 (374)
                      .++..++.+++.+.|+++    |+ +...++.+.++++.++..    +..++.+.|.+ +||.++++.      .+++||
T Consensus       250 ~~~~~~~~~~l~~~L~~~----~~-~~~~~~~~~~~~~~~~~~----~~~~l~~~L~~~~gi~v~~g~~f~~~~~~~iRi  320 (350)
T 3fkd_A          250 IRKWQRNTVDFITALNRL----DG-VEVHPSGTTFFLLRLKKG----TAAELKKYMLEEYNMLIRDASNFRGLDESYVRI  320 (350)
T ss_dssp             HHHHHHHHHHHHHHHHHS----TT-EEECCCSSSEEEEEESSS----CHHHHHHHHHHTTCEECEECTTSTTCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHhcC----CC-cEECCCCCcEEEEECCCC----CHHHHHHHHHHHCCEEEEeCccCCCCCCCEEEE
Confidence            233335566666666543    32 223445677888888754    57899999999 899998763      689999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHHh
Q 017259          324 TPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++   +++++++++++|+++++
T Consensus       321 s~~---~~~~~~~l~~al~~~~~  340 (350)
T 3fkd_A          321 TTQ---RPAQNQLFIKALETFLE  340 (350)
T ss_dssp             ECC---CHHHHHHHHHHHHHHHT
T ss_pred             EcC---CHHHHHHHHHHHHHHHH
Confidence            943   88899999999999887

>1qz9_A Kynureninase; kynurenine, tryptophan, PLP, vitamin B6, pyridoxal-5'-phosph hydrolase; HET: PLP P3G; 1.85A {Pseudomonas fluorescens} SCOP: c.67.1.3

Probab=99.95  E-value=3.6e-26  Score=216.22  Aligned_cols=296  Identities=16%  Similarity=0.126  Sum_probs=207.0

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcc-cccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWG-YVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~-~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~   95 (374)
                      .+...++++++++++|.+  ++++++|++++++.+++.+.... ...+|     |++++..+.+|+.+.... .+.... 
T Consensus        70 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~al~~~~~~~~~~~~g-----d~vii~~~~~~~~~~~~~~~~~~~~-  143 (416)
T 1qz9_A           70 RDLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPE-----RRVIVTETSNFPTDLYIAEGLADML-  143 (416)
T ss_dssp             GGHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTT-----CCEEEEETTSCHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHHcCCCcccEEEeCChhHHHHHHHHhhcccccccCCC-----CcEEEEcCCCCCchHHHHHHHHHHh-
Confidence            366788999999998754  89999999999999998874210 00456     776666666666433221 111000 


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                       .     ....+..++.  +++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++
T Consensus       144 -~-----~g~~~~~v~~--~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~-~g  207 (416)
T 1qz9_A          144 -Q-----QGYTLRLVDS--PEELPQAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AG  207 (416)
T ss_dssp             -C-----SSCEEEEESS--GGGHHHHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TT
T ss_pred             -c-----CCceEEEeCc--HHHHHHHhC---CCceEEEEeccccCcccccC----HHHHHHHHHHcCCEEEEEcccc-cc
Confidence             0     0012333443  778888776   47899999999999999998    9999999999999999999997 32


Q ss_pred             ccccCcccccCCCCCcEEEe--cccccCCccch-hhheeCHHHHhhcCCCCCC-----------------------CCCC
Q 017259          176 RSGRMLASDWEEVRPDMVIL--GKALGGGVIPV-SAVLADKEVMLCIQPGEHG-----------------------STFG  229 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~-G~~~~~~~~~~~~~~~~~~-----------------------~~~~  229 (374)
                      ..  .+....  ..+|++++  +|.+.+|. ++ |+++.++++.+.+.+...+                       ..++
T Consensus       208 ~~--~~~~~~--~~~d~~~~s~~K~l~~g~-~~~g~l~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~  282 (416)
T 1qz9_A          208 AV--PVDLHQ--AGADYAIGCTYKYLNGGP-GSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGT  282 (416)
T ss_dssp             TS--CCCHHH--HTCSEEEECSSSTTCCCT-TCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSC
T ss_pred             Cc--CCChhh--cCCCEEEecCcccCCCCC-CCeEEEEECHHHHhccCCCccccCccccccCCCCccCCCcchHHhcCCC
Confidence            21  111111  23576654  59998888 88 9999998887776653111                       1235


Q ss_pred             CCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHH--hCCCceeeEE--EEeeeEEEEeccCCCchhHHHH
Q 017259          230 GNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVR--GRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      .+..+++++.++++.+..+   ++.++++++.+++.+.|+++..  .+ .+.....  ..+.++++.++      +..++
T Consensus       283 ~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~------~~~~l  355 (416)
T 1qz9_A          283 QPITSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAAHEL-TLVTPREHAKRGSHVSFEHP------EGYAV  355 (416)
T ss_dssp             CCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTTSCC-EECSCSSGGGBCSEEEEECT------THHHH
T ss_pred             CCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHhhccCCCe-EEeCCCCHHHcCCEEEEecC------CHHHH
Confidence            6777888888888887542   5678888888888888877521  11 0111100  13566777665      35789


Q ss_pred             HHHHHHCCeEeccCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCC
Q 017259          303 CLKMKERGILAKPTHDTIVRLTPP-LSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      .+.|.++||.+.....+++||+++ +.++++++++++++|+++++ +..
T Consensus       356 ~~~l~~~gi~~~~~~~~~lRis~~~~~~t~~~i~~~~~~l~~~~~-~~~  403 (416)
T 1qz9_A          356 IQALIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILD-RKT  403 (416)
T ss_dssp             HHHHHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH-HTT
T ss_pred             HHHHHhCCcEeccCCCCeEEEeCcccCCCHHHHHHHHHHHHHHHh-ccc
Confidence            999999999987766789999987 58899999999999999998 643

>3isl_A Purine catabolism protein PUCG; pyridoxalphosphate, PLP dependent enzymes, purine metabolism transaminases, aminotransferases; HET: PLP; 2.06A {Bacillus subtilis}

Probab=99.95  E-value=5.7e-27  Score=221.56  Aligned_cols=289  Identities=15%  Similarity=0.080  Sum_probs=206.7

Q ss_pred             CCcHHHHHHHHhcccCCC--eEE-ecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVL-PMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~-~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~   95 (374)
                      .+...+++++++++++.+  .++ +++||++|++.+++.+     ..+|     |+|++.+++||+.... .....+   
T Consensus        43 ~~~~~~l~~~la~~~g~~~~~~~~~~~s~t~al~~~~~~l-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g---  109 (416)
T 3isl_A           43 TGIMNETMEMLRELFQTKNRWAYPIDGTSRAGIEAVLASV-----IEPE-----DDVLIPIYGRFGYLLTEIAERYG---  109 (416)
T ss_dssp             HHHHHHHHHHHHHHTTCCCSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEecCcHHHHHHHHHHHh-----cCCC-----CEEEEecCCcccHHHHHHHHhcC---
Confidence            445778999999988654  444 8999999999999988     5677     9999999999873221 111111   


Q ss_pred             ccccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                               ..+..++.+     |++++++++++.  +++++++++++|++|.+.+    +++|.++|++||+++|+|++
T Consensus       110 ---------~~~~~v~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a  174 (416)
T 3isl_A          110 ---------ANVHMLECEWGTVFDPEDIIREIKKV--KPKIVAMVHGETSTGRIHP----LKAIGEACRTEDALFIVDAV  174 (416)
T ss_dssp             ---------CEEEEEECCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CHHHHHHHHHTTCEEEEECT
T ss_pred             ---------CeeEEEecCCCCCCCHHHHHHHHhhC--CCcEEEEEccCCCCceecC----HHHHHHHHHHcCCEEEEECC
Confidence                     112222222     899999999843  5789999999999999998    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-------------------------
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-------------------------  223 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-------------------------  223 (374)
                      |+.. .  ..+.  .....+|++  +++|+++++. ++|+++.++++.+.+....                         
T Consensus       175 ~~~~-~--~~~~--~~~~~~d~~~~s~~K~l~g~~-g~g~~~~~~~~~~~~~~~~~~~~Gw~~~~~~~~~~gg~~~~~~~  248 (416)
T 3isl_A          175 ATIG-G--CEVK--VDEWKIDAAIGGTQKCLSVPS-GMAPITYNERVADVIAARKKVERGIATQADRAALSGNRPITSNY  248 (416)
T ss_dssp             TTTT-T--SCCC--TTTTTCSEEECCSSSTTCCCS-SEEEEEECHHHHHHHHTC------------------CCCCSCST
T ss_pred             cccc-C--CCcc--hhhcCCCEEEecCccccCCCC-CeEEEEECHHHHHHhhccccccccccccccchhccCCCCCCccc
Confidence            9721 1  1111  122345666  4559988877 8899999998877665321                         


Q ss_pred             -------------CCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeE
Q 017259          224 -------------HGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFN  286 (374)
Q Consensus       224 -------------~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~  286 (374)
                                   .....+.+..++.++.++++.+...   ++.++++++.+++.+.|++..  + .+... ....+.++
T Consensus       249 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~  325 (416)
T 3isl_A          249 FDLSQLEDYWSERRLNHHTEATTMLYALREGVRLVLEEGLETRFERHRHHEAALAAGIKAMG--L-RLFGDDSCKMPVVT  325 (416)
T ss_dssp             TCHHHHHHHTSTTCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTT--C-CBCSCGGGBCTTEE
T ss_pred             cchHHHHhhhcccCCCCCCCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHcC--C-EeccCccccCCcEE
Confidence                         1123355777888888888776543   567777788888888887742  1 11111 11235677


Q ss_pred             EEEeccCCCchhHHHHHHHHHHC-CeEeccC----CCCEEEEecCCCCCHHH-HHHHHHHHHHHHhccC
Q 017259          287 AVEFDKTALPVSAYDICLKMKER-GILAKPT----HDTIVRLTPPLSISSNE-LQEGSKALHDVLELDL  349 (374)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~~----~~~~lRi~~~~~~~~e~-i~~~~~~l~~~~~~~~  349 (374)
                      ++.+++..   +..++.+.|.++ ||.++++    ..+++|++++...++++ +++++++|+++++ ++
T Consensus       326 ~~~~~~~~---~~~~l~~~L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~~~-~~  390 (416)
T 3isl_A          326 CVEIPGGI---DGESVRDMLLAQFGIEIASSFGPLAGKIWRIGTMGYSCRKENVLFVLAGLEAVLL-RH  390 (416)
T ss_dssp             EEECCTTC---CHHHHHHHHHHHHCEECBCCCSTTTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred             EEeCCCCC---CHHHHHHHHHHhCCEEEecCCCCCCCCEEEEecccCCCcHHHHHHHHHHHHHHHH-Hc
Confidence            77776443   688999999887 9999874    36899999866666666 9999999999998 65

>2ay1_A Aroat, aromatic amino acid aminotransferase; HET: PLP AHC; 2.20A {Paracoccus denitrificans} SCOP: c.67.1.1 PDB: 1ay5_A* 1ay4_A* 1ay8_A* 2ay2_A* 2ay3_A* 2ay4_A* 2ay5_A* 2ay6_A* 2ay7_A* 2ay8_A* 2ay9_A*

Probab=99.95  E-value=1.1e-27  Score=225.00  Aligned_cols=289  Identities=13%  Similarity=0.090  Sum_probs=198.1

Q ss_pred             CCcHHHHHHHHhccc-C----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           20 NDKFPVFAERLTSMF-G----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-~----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      .....++++.+++++ +    .+++++  |+||++|++.+++++...   .+|     |+|++..|+||++...+...+.
T Consensus        68 ~~g~~~lr~~la~~~~~~~~~~~~v~~~~~~g~~~a~~~~~~~~~~~---~~g-----d~vl~~~p~~~~~~~~~~~~g~  139 (394)
T 2ay1_A           68 LSGEPEFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARMA---NPD-----LRVFVSDPTWPNHVSIMNFMGL  139 (394)
T ss_dssp             SSCCHHHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHHH---CTT-----CCEEEEESCCHHHHHHHHHHTC
T ss_pred             CCCcHHHHHHHHHHHhCCCCCcccEEEEecCCchhHHHHHHHHHHhc---CCC-----CEEEEcCCCChhHHHHHHHcCC
Confidence            345677777777765 3    468998  999999999999888531   256     8999999999987665554433


Q ss_pred             CccccccCCCCCCCceeccC---C----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           93 DNEAIRGFGPLLPGHLKVDF---G----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~---~----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                      .             +..++.   +    |++++++++++++++++++++++++|++|.+. +.+++++|.++|++||+++
T Consensus       140 ~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~~~~~~~~nptG~~~-~~~~l~~i~~~~~~~~~~l  205 (394)
T 2ay1_A          140 P-------------VQTYRYFDAETRGVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALP  205 (394)
T ss_dssp             C-------------EEEEECEETTTTEECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred             c-------------eEEEecccccCCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEE
Confidence            2             122222   1    79999999986544578888888999999766 7999999999999999999


Q ss_pred             EEeccccCCcccc--cCcccccC-CCCCc---EEEeccccc-CCccchhhhee---CHHHHhhc----CCCCCCCCCCCC
Q 017259          166 IADEIQSGLARSG--RMLASDWE-EVRPD---MVILGKALG-GGVIPVSAVLA---DKEVMLCI----QPGEHGSTFGGN  231 (374)
Q Consensus       166 i~Dea~~~~~~~g--~~~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~----~~~~~~~~~~~~  231 (374)
                      |+||+|+++++.+  .......+ ...++   +.|+||.++ +|+ |+||+++   ++++.+.+    ...........+
T Consensus       206 i~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~G~-riG~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  284 (394)
T 2ay1_A          206 LIDLAYQGFGDGLEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPP  284 (394)
T ss_dssp             EEEECCTTSSSCHHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             EEecCccccccCcccchHHHHHHhhcCCCEEEEEeccCCCcCcCC-ccceEEEEeCCHHHHHHHHHHHHHHHhhhcCCCC
Confidence            9999999886543  11122111 11234   338899999 799 9999987   56543332    211112222348


Q ss_pred             HHHHHHHHHHHHHH--------hhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHH
Q 017259          232 PLASAVAIASLDVI--------RDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       232 ~~~~~aa~~al~~~--------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      +++++++.++++..        ..++..++++++++++.+.|+++.... ++....+..+.++|+.++       ...+.
T Consensus       285 ~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~g~~~~~~~~-------~~~~~  356 (394)
T 2ay1_A          285 FHGAKIVSTVLTTPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD-RFGFVAEHRGMFSRLGAT-------PEQVK  356 (394)
T ss_dssp             CHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTTHHHHCCSSEEECCCC-------HHHHH
T ss_pred             hHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CeeEEcCCceEEEeeCCC-------HHHHH
Confidence            88888888887643        112456677777777777777664100 011111223566665332       34566


Q ss_pred             HHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          304 LKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       304 ~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +.|.++||.+.++    +||+++ ..+++++++++++|+++
T Consensus       357 ~~l~~~gi~v~~~----~Ris~~-~~~~~~i~~~~~~l~~~  392 (394)
T 2ay1_A          357 RIKEEFGIYMVGD----SRINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             HHHHHHCEECCTT----CEEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HHHHhCCEEecCC----CeEEee-cCCHhhHHHHHHHHHHc
Confidence            7777899999875    599977 46899999999999875

>3lvm_A Cysteine desulfurase; structural genomics, montreal-kingston bacterial structural genomics initiative, BSGI, transferase; HET: PLP; 2.05A {Escherichia coli} PDB: 3lvk_A* 3lvl_B* 3lvj_A* 1p3w_B*

Probab=99.95  E-value=8.5e-27  Score=221.01  Aligned_cols=291  Identities=14%  Similarity=0.145  Sum_probs=203.2

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +...+++++|+++++.+  ++++++||++|++.+++++.... .++|     |+|++..++|++.......+.. .+   
T Consensus        68 ~~~~~l~~~la~~~~~~~~~v~~~~ggt~a~~~a~~~l~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~-~g---  137 (423)
T 3lvm_A           68 EAVDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY-QKKG-----KHIITSKTEHKAVLDTCRQLER-EG---  137 (423)
T ss_dssp             HHHHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH-TTTC-----CEEEEETTSCHHHHHHHHHHHH-TT---
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEeCChHHHHHHHHHHHHHhh-ccCC-----CEEEECCccchHHHHHHHHHHH-cC---
Confidence            45678999999998776  89999999999999999886321 2356     9999999999876554433210 01   


Q ss_pred             cCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                            ..+..++.+     |+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|+.
T Consensus       138 ------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~Dea~~~  204 (423)
T 3lvm_A          138 ------FEVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQSV  204 (423)
T ss_dssp             ------CEEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTTT
T ss_pred             ------CEEEEeccCCCCccCHHHHHHhcC---CCcEEEEEeCCCCCCccccC----HHHHHHHHHHcCCEEEEEhhhhc
Confidence                  111222222     7999999887   57899999999999999998    99999999999999999999973


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHHH
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~~  244 (374)
                      . .    .........+|++  |+||.+ |+. ++|+++++++..+.+.....       ....+.+...++++.++++.
T Consensus       205 ~-~----~~~~~~~~~~di~~~s~sK~~-g~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~  277 (423)
T 3lvm_A          205 G-K----LPIDLSQLKVDLMSFSGHKIY-GPK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRI  277 (423)
T ss_dssp             T-T----SCCCTTTSCCSEEEEESTTTT-SCS-SCEEEEECBTTBCCCCCSSCSSCTTTTTCCSCCCHHHHHHHHHHHHH
T ss_pred             C-C----CCcChhhcCCCEEEechHHhc-CCC-CeEEEEEeccccCCCCccccCCcccccccCCCCCHHHHHHHHHHHHH
Confidence            2 1    1122223456766  555954 444 57899988877777665432       22345677888888788877


Q ss_pred             Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC--
Q 017259          245 IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--  317 (374)
Q Consensus       245 ~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--  317 (374)
                      +..  +++.++++++.+++.+.|++    +|++.....   ..+.++.+.++..    +..++.+.|.+  |.++++.  
T Consensus       278 ~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~l~~--i~v~~g~~~  347 (423)
T 3lvm_A          278 AKEEMATEMERLRGLRNRLWNGIKD----IEEVYLNGDLEHGAPNILNVSFNYV----EGESLIMALKD--LAVSSGSAC  347 (423)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTT----STTEEEESCSTTBCTTEEEEEETTS----CHHHHHHHTTT--EECBCCCC-
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhc----CCCEEEeCCccccCCCeEEEEeCCC----CHHHHHHHHhh--heeccCccc
Confidence            654  34555555566666555543    322211111   1135666666443    57788888877  7777642  


Q ss_pred             ---------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          318 ---------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       318 ---------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                                           .+++||+++...+++++++++++|+++++ ++.+.
T Consensus       348 ~~~~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~t~e~i~~~~~~l~~~~~-~~~~~  402 (423)
T 3lvm_A          348 TSASLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG-RLRDL  402 (423)
T ss_dssp             ----CCCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTS
T ss_pred             cCCCccccHHHHHhCCCccccCceEEEECCCCCCHHHHHHHHHHHHHHHH-Hhhcc
Confidence                                 38999999988999999999999999998 66443

>2rfv_A Methionine gamma-lyase; pyridoxal-5'-phosphate, PLP-dependent enzyme; HET: LLP; 1.35A {Citrobacter freundii} PDB: 1y4i_A* 3jwa_A* 3jw9_A* 3jwb_A* 3mkj_A*

Probab=99.95  E-value=5.2e-27  Score=220.87  Aligned_cols=297  Identities=11%  Similarity=0.073  Sum_probs=204.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++..+++++++++++|.+++++++||++|++.+++.+     .++|     |+|++.+++|++.......+..
T Consensus        56 ~~~~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~  125 (398)
T 2rfv_A           56 YIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTL-----CQQG-----DHIVSASAIYGCTHAFLSHSMP  125 (398)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSSCHHHHHHHHTHHH
T ss_pred             CceeCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCcccHHHHHHHHHH
Confidence            33445667889999999999999889999999999999999988     4567     9999999999876544311100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       126 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~  189 (398)
T 2rfv_A          126 K---------FGINVRFVDAAKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTFM  189 (398)
T ss_dssp             H---------TTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSBTTTTBCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             H---------cCCEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         012345556668999998887   57999999999999999997    9999999999999999999998


Q ss_pred             CCcccccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCCC-CCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .+.. +...   .++.+..+.|+||.+++ |+ |+ |++++++++++ .+....... +++.+++.++++.++++.+.  
T Consensus       190 ~~~~-~~~~---~~~~di~~~s~sK~~~~~g~-~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  262 (398)
T 2rfv_A          190 SPYC-QQPL---QLGADIVVHSVTKYINGHGD-VIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG--  262 (398)
T ss_dssp             CTTT-CCGG---GGTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH--
T ss_pred             cccc-CCch---hhCCcEEEEeCcccccCCCC-ceEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHhhhhhHH--
Confidence            4322 2221   12322234588999975 77 88 89999988776 555433333 45778888888888886432  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHH----------HhCCCcee---eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          249 KLAERSAHLGEELRQHLFKIQ----------QQFPNYVK---EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~----------~~~~~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ...++..++.+++.+.|++..          ..+|++..   ..++.+.++++.++...  .....+.+.+...|+.+++
T Consensus       263 ~~~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~l~~~~~~~~i~~~~  340 (398)
T 2rfv_A          263 IRMERHCENALKIARFLEGHPSITRVYYPGLSSHPQYELGQRQMSLPGGIISFEIAGGL--EAGRRMINSVELCLLAVSL  340 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHTTCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEcCCH--HHHHHHHHhCCcceeccCC
Confidence            234555556666666665421          00110000   01235788888886310  1234444444444666544


Q ss_pred             C-------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          316 T-------------------------H--DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       316 ~-------------------------~--~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +                         +  .+.+|++++...++++++++.++|+++
T Consensus       341 G~~~~li~~~~~~~~~~~~~~~~~~~g~~~~~iRls~~~~~~~~~i~~l~~al~~~  396 (398)
T 2rfv_A          341 GDTETLIQHPASMTHSPVAPEERLKAGITDGLIRLSVGLEDPEDIINDLEHAIRKA  396 (398)
T ss_dssp             SSSSCEEECHHHHTSSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             CCcceeeecccccccccCCHHHHHhcCCCCCeEEEEecCCCHHHHHHHHHHHHHhh
Confidence            3                         1  589999999999999999988888754

>3p1t_A Putative histidinol-phosphate aminotransferase; PLP-dependent transferase-like, structural genomics, joint C structural genomics, JCSG; HET: TLA; 2.60A {Burkholderia pseudomallei}

Probab=99.95  E-value=2.1e-26  Score=211.56  Aligned_cols=281  Identities=15%  Similarity=0.126  Sum_probs=197.9

Q ss_pred             CCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           17 AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .|+.+...++++.++++++.  +++++|+|++++++.++..+       +|     |+|++..|+|++....+...+...
T Consensus        47 ~y~~~~~~~lr~~la~~~~~~~~~i~~t~G~~~~l~~~~~~~-------~g-----d~vl~~~p~~~~~~~~~~~~g~~~  114 (337)
T 3p1t_A           47 RYPFDAEPRVMRKLAEHFSCPEDNLMLVRGIDECFDRISAEF-------SS-----MRFVTAWPGFDGYRARIAVSGLRH  114 (337)
T ss_dssp             SCCTTHHHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHS-------TT-----SEEEEESSSCSHHHHHHTTSCCEE
T ss_pred             cCCCCchHHHHHHHHHHhCcCHHHEEEeCCHHHHHHHHHHhc-------CC-----CeEEEeCCCcHHHHHHHHHcCCEE
Confidence            35677889999999999865  48999999999999888765       45     999999999988665544332211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ...    +...+.    ..|+++++++     .+++++++++++|++|.+.+    ++++.++|+++++ +|+||+|++|
T Consensus       115 ~~v----~~~~~~----~~d~~~l~~~-----~~~~~v~i~~p~nptG~~~~----~~~l~~l~~~~~~-~ivDea~~~~  176 (337)
T 3p1t_A          115 FEI----GLTDDL----LLDPNDLAQV-----SRDDCVVLANPSNPTGQALS----AGELDQLRQRAGK-LLIDETYVDY  176 (337)
T ss_dssp             EEE----CBCTTS----SBCHHHHTTC-----CTTEEEEEESSCTTTCCCCC----HHHHHHHHHHCSE-EEEECTTGGG
T ss_pred             EEe----cCCCCC----CCCHHHHHhh-----cCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCCc-EEEECCChhh
Confidence            110    100000    0167777654     35788999999999999998    8999999999997 5669999977


Q ss_pred             cccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHHH
Q 017259          175 ARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EKLAE  252 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~~  252 (374)
                      +..+.. .....+....+.|+||.++ +|+ |+||+++++++.+.+...  ...++.+.+++.++.++++.... ++..+
T Consensus       177 ~~~~~~-~~~~~~~~i~~~S~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~a~~~~l~~~~~~~~~~~  252 (337)
T 3p1t_A          177 SSFRAR-GLAYGENELVFRSFSKSYGLAGL-RLGALFGPSELIAAMKRK--QWFCNVGTLDLHALEAALDNDRAREAHIA  252 (337)
T ss_dssp             SSCSSS-CCCCBTTEEEEEESSSTTCCTTT-CCEEEECCHHHHHHHHTT--SCTTCSCHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             cccccc-ccccCCCEEEEeeCchhccCcch-heEEEEeCHHHHHHHHhh--cCCCCCCHHHHHHHHHHhCCHHHHHHHHH
Confidence            543322 1111111122448999998 799 999999999998888753  34567788888888877764221 23445


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----CCEEEEecCCC
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----DTIVRLTPPLS  328 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----~~~lRi~~~~~  328 (374)
                      ++.++++++.+.|+++.     +. ...+.+.++++..++      ..++.+.|.++||.++++.    ++++||+++  
T Consensus       253 ~~~~~~~~l~~~L~~~g-----~~-~~~~~~~~~~~~~~~------~~~~~~~l~~~gi~v~~g~~~~~~~~iRis~~--  318 (337)
T 3p1t_A          253 KTLAQRRRVADALRGLG-----YR-VASSEANFVLVENAA------GERTLRFLRERGIQVKDAGQFGLHHHIRISIG--  318 (337)
T ss_dssp             HHHHHHHHHHHHHHHTT-----CC-BCCCSSSEEEEECTT------THHHHHHHHHTTEECEEGGGGTCCSEEEEECC--
T ss_pred             HHHHHHHHHHHHHHHCc-----CE-ECCCCCeEEEEEcCC------HHHHHHHHHHCCeEEEECccCCCCCeEEEecC--
Confidence            55555666666665541     21 123456777776543      3578888999999998864    589999944  


Q ss_pred             CCHHHHHHHHHHHHHHHh
Q 017259          329 ISSNELQEGSKALHDVLE  346 (374)
Q Consensus       329 ~~~e~i~~~~~~l~~~~~  346 (374)
                       +++++++++++|+++.+
T Consensus       319 -~~~~~~~l~~al~~~~~  335 (337)
T 3p1t_A          319 -REEDNDRLLAALAEYSD  335 (337)
T ss_dssp             -CHHHHHHHHHHHHHHTC
T ss_pred             -CHHHHHHHHHHHHHHhh
Confidence             78999999999988764

>4f4e_A Aromatic-amino-acid aminotransferase; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; HET: LLP; 1.80A {Burkholderia pseudomallei} PDB: 4eff_A*

Probab=99.95  E-value=3e-27  Score=224.12  Aligned_cols=290  Identities=13%  Similarity=0.107  Sum_probs=191.3

Q ss_pred             CcHHHHHHHHhcccC----CC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           21 DKFPVFAERLTSMFG----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~----~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++++.+++.+....+    .+  ++++|+||++|++.+++++..   ..+|     |+|++.+|+|+++...+...+.. 
T Consensus        96 ~lr~~ia~~l~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~~~~---~~~g-----d~Vlv~~p~~~~~~~~~~~~g~~-  166 (420)
T 4f4e_A           96 AYDASVQKLLLGDDSPLIAAGRVVTAQALGGTGALKIGADFLRT---LNPK-----AKVAISDPSWENHRALFDMAGFE-  166 (420)
T ss_dssp             HHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCHHHHHHHHHTTCC-
T ss_pred             HHHHHHHHHhcCCCccccccCceEEEECCccHHHHHHHHHHHHH---hCCC-----CEEEEeCCCcHhHHHHHHHcCCe-
Confidence            334445555544332    45  899999999999999765421   4567     99999999998876655544432 


Q ss_pred             cccccCCCCCCCceeccC----C---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           95 EAIRGFGPLLPGHLKVDF----G---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~----~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                                  +..+++    +   |++++++.+++++++++++++++++|++|.+. +.+.+++|.++|++||+++|+
T Consensus       167 ------------~~~v~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~  233 (420)
T 4f4e_A          167 ------------VVAYPYYDAKTNGVNFDGMLAALNGYEPGTIVVLHACCHNPTGVDL-NDAQWAQVVEVVKARRLVPFL  233 (420)
T ss_dssp             ------------EEEEECEETTTTEECHHHHHHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred             ------------EEEeeeeccccCccCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCcEEEE
Confidence                        222222    1   79999999987666889999999999999877 899999999999999999999


Q ss_pred             eccccCCccccc--Ccccc-cCCCCCc---EEEeccccc-CCccchhhhee---CHHHHhh----cCCCCCCCCCCCCHH
Q 017259          168 DEIQSGLARSGR--MLASD-WEEVRPD---MVILGKALG-GGVIPVSAVLA---DKEVMLC----IQPGEHGSTFGGNPL  233 (374)
Q Consensus       168 Dea~~~~~~~g~--~~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~~~~~----~~~~~~~~~~~~~~~  233 (374)
                      ||+|+++.+.+.  ..... ..+..++   +.|+||.++ .|+ |+||+++   ++++++.    +.......+.+.+.+
T Consensus       234 De~y~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  312 (420)
T 4f4e_A          234 DIAYQGFGESIEADAAAVRLFAAANLNVFVSSSFSKSFSLYGE-RVGALSIITDSKDEAARVLSQLKRVIRTNYSNPPTH  312 (420)
T ss_dssp             EESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCSH
T ss_pred             ccccccccCCcchhhHHHHHHHhcCCCEEEEEeCCccCcCcCC-CcEEEEEEcCCHHHHHHHHHHHHHHHhcccCCCCHH
Confidence            999998865431  11111 1112222   348999999 699 9999753   4554433    221111233445677


Q ss_pred             HHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          234 ASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       234 ~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      ++.++.++++...      +  +++.++++++++.+.+.|+++... +++....+..|.+.|+.+       +...+.+.
T Consensus       313 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~-~~~~~~~~~~g~~~~~~~-------~~~~~~~~  384 (420)
T 4f4e_A          313 GGAIVAAVLASPELRASWVQELGEMRDRIRAMRNGLVERLKAAGIE-RDFSFINAQRGMFSYSGL-------TSAQVDRL  384 (420)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS-SCCTHHHHSCSSEEECCC-------CHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-CCceeECCCccEEEEeCC-------CHHHHHHH
Confidence            7777666655321      1  244566666666666666654211 011111223455555433       34567777


Q ss_pred             HHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |.++||.+.+..    |++++ ..+++++++++++|+++++
T Consensus       385 l~~~gI~v~~~~----Ris~~-~~~~~~i~~~~~~l~~~l~  420 (420)
T 4f4e_A          385 REEFGIYAVSTG----RICVA-ALNTRNLDVVANAIAAVLK  420 (420)
T ss_dssp             HHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred             HHhCCEEecCCC----eEEEe-cCCHHHHHHHHHHHHHHhC
Confidence            778899999864    99975 3377789999999998763

>3cai_A Possible aminotransferase; RV3778C; 1.80A {Mycobacterium tuberculosis}

Probab=99.95  E-value=3.1e-26  Score=215.97  Aligned_cols=285  Identities=14%  Similarity=0.049  Sum_probs=196.8

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .+...++++++++++|.+  ++++++|++++++.+++++...  ..+|     |+|++.+++|++.......+....+. 
T Consensus        68 ~~~~~~l~~~la~~~g~~~~~v~~~~g~t~al~~~~~~l~~~--~~~g-----d~vi~~~~~~~~~~~~~~~~~~~~g~-  139 (406)
T 3cai_A           68 AAVLDAAREAVADLVNADPGGVVLGADRAVLLSLLAEASSSR--AGLG-----YEVIVSRLDDEANIAPWLRAAHRYGA-  139 (406)
T ss_dssp             HHHHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHTGGG--GBTT-----CEEEEETTSCGGGTHHHHHHHHHHBC-
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEeCChHHHHHHHHHHHhhc--cCCC-----CEEEEcCCccHHHHHHHHHHHHhcCC-
Confidence            456788999999988765  8999999999999988876211  3566     99999999998765443332100011 


Q ss_pred             ccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           98 RGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                              .+..++.      -|+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|
T Consensus       140 --------~v~~v~~~~~~~~~d~~~l~~~l~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~  204 (406)
T 3cai_A          140 --------KVKWAEVDIETGELPTWQWESLIS---KSTRLVAVNSASGTLGGVTD----LRAMTKLVHDVGALVVVDHSA  204 (406)
T ss_dssp             --------EEEEECCCTTTCCCCGGGHHHHCC---TTEEEEEEESBCTTTCBBCC----CHHHHHHHHHTTCEEEEECTT
T ss_pred             --------eEEEEecCcccCCcCHHHHHHHhC---CCceEEEEeCCcCCccccCC----HHHHHHHHHHcCCEEEEEccc
Confidence                    1111222      17889988886   57999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccCCccchh-hheeCHHHHhhcCCCCCC---------CCCCCCHHHHHHHH
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVS-AVLADKEVMLCIQPGEHG---------STFGGNPLASAVAI  239 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G-~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~aa~  239 (374)
                      +. +..  .+....+  .+|++  |++|.+++   ++| ++++++++.+.+.+....         ...+.+..+++++.
T Consensus       205 ~~-g~~--~~~~~~~--~~d~~~~s~~K~~g~---~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~t~~~~~~~a~~  276 (406)
T 3cai_A          205 AA-PYR--LLDIRET--DADVVTVNAHAWGGP---PIGAMVFRDPSVMNSFGSVSTNPYATGPARLEIGVHQFGLLAGVV  276 (406)
T ss_dssp             TT-TTC--CCCHHHH--CCSEEEEEGGGGTSC---SCEEEEESCHHHHHTSCCCCSCTTCCGGGGGCCSCCCHHHHHHHH
T ss_pred             cc-CCC--CCCchhc--CCCEEEeehhhhcCC---CcCeEEEEehHHHhhcCCcccCCCCCccccccCCCccHHHHHHHH
Confidence            72 111  1122222  34655  67797653   478 888999988887754321         13345777777777


Q ss_pred             HHHHHHhh-----------------hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE--EEeeeEEEEeccCCCchhHH
Q 017259          240 ASLDVIRD-----------------EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR--GRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       240 ~al~~~~~-----------------~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~--~~g~~~~~~~~~~~~~~~~~  300 (374)
                      ++++.+..                 +++.++++++.+++.+.|++    +|++....+  ..+.++++.++..    +..
T Consensus       277 ~al~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~  348 (406)
T 3cai_A          277 ASIEYLAALDESARGSRRERLAVSMQSADAYLNRVFDYLMVSLRS----LPLVMLIGRPEAQIPVVSFAVHKV----PAD  348 (406)
T ss_dssp             HHHHHHHTSSTTCCSSHHHHHHHHHHHHHHHHHHHHHHHHHHHHT----CTTEEECCCCSSBCSEEEEEETTB----CHH
T ss_pred             HHHHHHHHhccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEcCCccccCCEEEEEECCc----CHH
Confidence            78877654                 23344445555555555543    332211111  1244677777642    578


Q ss_pred             HHHHHHHHCCeEeccCC-------------CCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          301 DICLKMKERGILAKPTH-------------DTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~-------------~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++.+.|.++||.++++.             .+++|++++..++++++++++++|++
T Consensus       349 ~~~~~L~~~gi~v~~g~~~~~~~~~g~~~~~~~iRis~~~~~t~e~i~~~~~~l~~  404 (406)
T 3cai_A          349 RVVQRLADNGILAIANTGSRVLDVLGVNDVGGAVTVGLAHYSTMAEVDQLVRALAS  404 (406)
T ss_dssp             HHHHHHHHTTEECEECCSCHHHHHHTTTTTTCCEEEECCTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCcEEecCChHHHHHHcCCCCCCCeEEEEeecCCCHHHHHHHHHHHHH
Confidence            89999999999998753             37899999988899999999998864

>3f6t_A Aspartate aminotransferase; YP_194538.1, STRU genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: LLP; 2.15A {Lactobacillus acidophilus ncfm}

Probab=99.95  E-value=1.2e-26  Score=225.90  Aligned_cols=308  Identities=11%  Similarity=0.072  Sum_probs=195.2

Q ss_pred             CCcHHHHHHHHhccc-C------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           20 NDKFPVFAERLTSMF-G------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      .++.+.+++.+.+.. +      .+++++|+|+++|+..++..+......++|     |+|++..|+|+++.......+.
T Consensus       141 ~~lr~~ia~~l~~~~~~~~~~~~~~~i~~t~G~t~al~~~~~~l~~~~l~~~g-----d~Viv~~p~~~~~~~~~~~~g~  215 (533)
T 3f6t_A          141 VNTEKIINYFLQELSYKDANLAEQTDLFPTEGGTAAIVYAFHSLAENHLLKKG-----DKIAINEPIFTPYLRIPELKDY  215 (533)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTT-----CEEEEESSCCHHHHTSGGGGGS
T ss_pred             HHHHHHHHHHHHHhcCCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhccCCc-----CEEEEcCCCcHHHHHHHHHcCC
Confidence            334445555554441 2      268999999999999999985433336778     9999999999887655544332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH-hcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS-KYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~-~~~i~li~Dea~  171 (374)
                      .........+...+...    |+++|+++++   ++++++++++++|++|.+. +.+.+++|+++|+ +||++||+||+|
T Consensus       216 ~~~~v~~~~~~~~~~~~----d~~~l~~~l~---~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~la~~~~~~~li~De~y  287 (533)
T 3f6t_A          216 ELVEVDLHSYEKNDWEI----EPNEIEKLKD---PSIKALIVVNPTNPTSKEF-DTNALNAIKQAVEKNPKLMIISDEVY  287 (533)
T ss_dssp             EEEEECCCEETTTTSEE----CHHHHHHHSC---TTEEEEEEESSCTTTCBCC-CHHHHHHHHHHHHHCTTCEEEEECTT
T ss_pred             eEEEEEecCCcccCCCC----CHHHHHHHhC---CCCeEEEEeCCCCCCcccc-CHHHHHHHHHHHHhCCCCEEEEcCCc
Confidence            21111000000000111    7899998876   5799999988889999877 7888999999999 699999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHH-----HHhhc--------------------------
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE-----VMLCI--------------------------  219 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~-----~~~~~--------------------------  219 (374)
                      +++.+.+..+.....+....+.||||.++ .|+ |+||++++++     +++.+                          
T Consensus       288 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~~~~~~~~~li~~l~~~~~~~~~~~~~~~~~~p~~~~~i~  366 (533)
T 3f6t_A          288 GAFVPNFKSIYSVVPYNTMLVYSYSKLFGCTGW-RLGVIALNEKNVFDDNIAHLDKVELRQLHKRYSSVVLDPDKMKFID  366 (533)
T ss_dssp             GGGSTTCCCHHHHSGGGEEEEEESHHHHTCGGG-CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHHTTCSCGGGCCHHH
T ss_pred             cccccCccCHhhcCCCCEEEEecCcccCCCccc-ceEEEEECcHHHHHHHHHhcchhhHHHHHhhhhccccCcchhhhHH
Confidence            98754332221111122234559999998 799 9999988766     44433                          


Q ss_pred             ------CCCCCCCCCCCCHHHHHH----HHHHHHH----Hhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE
Q 017259          220 ------QPGEHGSTFGGNPLASAV----AIASLDV----IRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG  281 (374)
Q Consensus       220 ------~~~~~~~~~~~~~~~~~a----a~~al~~----~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  281 (374)
                            .......+.+.+.+.+.+    +.+++..    -..+    ...++++++.+.+.+.|.     + +.....+.
T Consensus       367 rl~~~~~~~~~~~~~~~~~~~q~a~a~~a~~~L~~~~g~~~~~~~~~~~~~~~~~r~~~l~~~L~-----~-~~~~~~~~  440 (533)
T 3f6t_A          367 RLCADSRSIGLYHTAGLSTPQQIMEALFSMTHLLTSTNGGSDDPYIDIARKLVSERYDQLHDAMQ-----A-PKDETDTN  440 (533)
T ss_dssp             HHHHHHTTTTTGGGCSCCHHHHHHHHHHHHHHHTTCBGGGTBCHHHHHHHHHHHHHHHHHHHHHT-----C-CCCCSTTB
T ss_pred             HHHHHHHHHHHhcccCCChHHHHHHHHHHHHHHhhhccccchHHHHHHHHHHHHHHHHHHHHhcC-----C-CccccCCC
Confidence                  333344455667777776    3344420    0011    233444444444444442     2 22222234


Q ss_pred             EeeeEEEEeccCCC---c----------hhHHHHHHHHH-HCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHH
Q 017259          282 RGLFNAVEFDKTAL---P----------VSAYDICLKMK-ERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALH  342 (374)
Q Consensus       282 ~g~~~~~~~~~~~~---~----------~~~~~~~~~l~-~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~  342 (374)
                      .+.++|+.++....   +          .+..+++..++ ++||.+.|+.     .+++|+++. ..+++++++++++|+
T Consensus       441 ~g~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~ll~~~GV~v~pg~~f~~~~~~iRls~a-~~~~e~i~~~i~~L~  519 (533)
T 3f6t_A          441 THYYSLIDIYRLAEKIYGKEFRDYLTNNFEQVDFLLKLAEKNGVVLVDGVGFGAKPGELRVSQA-NLPTEDYALIGKQVL  519 (533)
T ss_dssp             CCSEEEEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHTTSSSCTTEEECSSTTEEEEESS-SSCHHHHHHHHHHHH
T ss_pred             ceEEEEEehHhhhhhccchHHHHHhhccCCHHHHHHHHHHhCCEEEeCCcccCCCCCEEEEEEe-eCCHHHHHHHHHHHH
Confidence            56667776643000   0          03446666665 6799998863     689999964 358999999999999


Q ss_pred             HHHhccC
Q 017259          343 DVLELDL  349 (374)
Q Consensus       343 ~~~~~~~  349 (374)
                      ++++ ++
T Consensus       520 ~~l~-~~  525 (533)
T 3f6t_A          520 ELLK-EY  525 (533)
T ss_dssp             HHHH-HH
T ss_pred             HHHH-HH
Confidence            9987 54

>1iug_A Putative aspartate aminotransferase; wild type, pyridoxal-5'-phosphate form, riken structural genomics/proteomics initiative, RSGI; HET: LLP; 2.20A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.95  E-value=8.3e-27  Score=215.43  Aligned_cols=287  Identities=15%  Similarity=0.039  Sum_probs=202.5

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc--cCCccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM--SCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~--~~~~~~   96 (374)
                      +...++++++++++|.+  ++++++||++|++.+++.+     .++|     |+|++.+++|++.. ....+  .+....
T Consensus        34 ~~~~~l~~~la~~~g~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~-~~~~~~~~g~~~~  102 (352)
T 1iug_A           34 EVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-----FAPG-----ERVLVPVYGKFSER-FYEIALEAGLVVE  102 (352)
T ss_dssp             HHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHH-HHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCceEEEcCchHHHHHHHHHhc-----cCCC-----CeEEEEeCCchhHH-HHHHHHHcCCceE
Confidence            34678999999988765  8999999999999999988     4567     99999999988864 21111  111100


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEeccccCC
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGL  174 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea~~~~  174 (374)
                      .   .+...+.    ..|++++++      ++++++++++++|++|.+.+    +++|.++|++|  |+++|+||+|+ +
T Consensus       103 ~---v~~~~~~----~~d~~~l~~------~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~~~li~D~a~~-~  164 (352)
T 1iug_A          103 R---LDYPYGD----TPRPEDVAK------EGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-L  164 (352)
T ss_dssp             E---EECCTTC----CCCTTTSCC------SSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-B
T ss_pred             E---EeCCCCC----CCCHHHHhc------cCCcEEEEEEecCCcceecC----HHHHHHHHHhhCCCCEEEEECCcc-c
Confidence            0   0110100    014555544      36788999999999999998    99999999999  99999999997 3


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC-------------C-CCCCCCCCCHHHHHHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP-------------G-EHGSTFGGNPLASAVA  238 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~-------------~-~~~~~~~~~~~~~~aa  238 (374)
                      +..  .+....  ..+|++  |+||++.++. ++|++++++++.+.+..             . .....++.+..++.++
T Consensus       165 ~~~--~~~~~~--~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~  239 (352)
T 1iug_A          165 LVG--EVALEA--MGVDAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAV  239 (352)
T ss_dssp             TTB--CCCSGG--GTCSEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHH
T ss_pred             cCc--ceeccc--cCeeEEEecCcccccCCC-ceeEEEECHHHHHHhhCCCceeeHHHHHhhcccCCCCCCCCHHHHHHH
Confidence            221  112121  235655  6679888766 78999998887655321             0 1223456688888888


Q ss_pred             HHHHHHHhhh--cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC
Q 017259          239 IASLDVIRDE--KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT  316 (374)
Q Consensus       239 ~~al~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~  316 (374)
                      .++++.+.+.  ++.++++++++++.+.|+++  .+ .+... ...+.++++.+++..   +..++.+.|.++||.++++
T Consensus       240 ~~al~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~  312 (352)
T 1iug_A          240 AAVLEEVLPRLEEHLALKAWQNALLYGVGEEG--GL-RPVPK-RFSPAVAAFYLPEGV---PYARVKEAFAQRGAVIAGG  312 (352)
T ss_dssp             HHHHHHHGGGHHHHHHHHHHHHHHHHHHHHHT--TC-EESCS-SBCTTCEEEECCTTC---CHHHHHHHHHTTTEECEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--CC-ccccc-ccCCeEEEEEcCCCC---CHHHHHHHHHHCCEEEEeC
Confidence            8888876543  56677777777777777664  11 11111 125678888876432   6788999999999999886


Q ss_pred             C----CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          317 H----DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       317 ~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .    .+++|++++...+++++++++++|+++++ ++
T Consensus       313 ~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~  348 (352)
T 1iug_A          313 QGPLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI  348 (352)
T ss_dssp             CGGGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred             CCccCCCEEEEEccccCCHHHHHHHHHHHHHHHH-Hh
Confidence            3    58999999888899999999999999987 54

>1eg5_A Aminotransferase; PLP-dependent enzymes, iron-sulfur-cluster synthesis, C-S BE transferase; HET: PLP; 2.00A {Thermotoga maritima} SCOP: c.67.1.3 PDB: 1ecx_A*

Probab=99.95  E-value=3.5e-26  Score=213.69  Aligned_cols=294  Identities=16%  Similarity=0.120  Sum_probs=203.3

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~   96 (374)
                      +...++++++++++|.+  ++++++||++|++.+++++..+. ..+|     |+|++.+++|++.......  ..+....
T Consensus        44 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~-~~~g-----d~vl~~~~~~~~~~~~~~~~~~~g~~~~  117 (384)
T 1eg5_A           44 LHMEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETF-EKRK-----RTIITTPIEHKAVLETMKYLSMKGFKVK  117 (384)
T ss_dssp             HHHHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHT-TTTC-----CEEEECTTSCHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHcCCCCCeEEEECCHHHHHHHHHHhhhhhc-cCCC-----CEEEECCCCchHHHHHHHHHHhcCCEEE
Confidence            44678999999988765  89999999999999999985211 1456     9999999999876444321  1111111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC--CEEEEeccccCC
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGL  174 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~--i~li~Dea~~~~  174 (374)
                         +.+...+.    ..|+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||  ++||+||+|+ +
T Consensus       118 ---~v~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~li~Dea~~-~  182 (384)
T 1eg5_A          118 ---YVPVDSRG----VVKLEELEKLVD---EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-I  182 (384)
T ss_dssp             ---ECCBCTTS----CBCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-T
T ss_pred             ---EEccCCCC----ccCHHHHHHHhC---CCCeEEEEECCCCCcccccC----HHHHHHHHHhcCCceEEEEEhhhh-c
Confidence               11111111    127899998887   47999999999999999998    999999999999  9999999997 4


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHH--HhhcCCCC---CCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV--MLCIQPGE---HGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~--~~~~~~~~---~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      +..  .+...  ...+|++  |+||.++. . ++|++++++++  ...+....   ...+++.+.+++.++.++++.+.+
T Consensus       183 ~~~--~~~~~--~~~~di~~~s~sK~~g~-~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~al~~~~~  256 (384)
T 1eg5_A          183 GKI--PFSLE--KLEVDYASFSAHKFHGP-K-GVGITYIRKGVPIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVE  256 (384)
T ss_dssp             TTS--CCCCT--TTCCSEEEEEGGGGTSC-T-TCEEEEECTTSCCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHH
T ss_pred             CCc--ccCch--hcCCCEEEecHHHhcCC-C-ceEEEEEcCCCccccccccCcccccccCCCCChHHHHHHHHHHHHHHH
Confidence            321  11222  2346766  45598653 1 25888888775  22332211   124557788999988888887533


Q ss_pred             --hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----
Q 017259          248 --EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----  317 (374)
Q Consensus       248 --~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----  317 (374)
                        +++.++++++.+++.+.|++.     ++.....   ..+.++++.++..    +..++.+.|.++||.++++.     
T Consensus       257 ~~~~~~~~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~  327 (384)
T 1eg5_A          257 ELSEAAKHMEKLRSKLVSGLMNL-----GAHIITPLEISLPNTLSVSFPNI----RGSTLQNLLSGYGIYVSTSSACTSK  327 (384)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHTT-----TCEECSCTTSBCTTEEEEECTTC----CHHHHHHHHHHTTEECBC-------
T ss_pred             hHHHHHHHHHHHHHHHHHHhCCC-----CeEEeCCcccCCCCEEEEEeCCC----CHHHHHHHHhhCCeEEeccccccCC
Confidence              355667777777777777652     2211111   1345666666543    57889999999999998742     


Q ss_pred             ------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          318 ------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       318 ------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                                        .+++||+++...+++++++++++|+++++ ++.+
T Consensus       328 ~~~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~~~  378 (384)
T 1eg5_A          328 DERLRHVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS-FLDL  378 (384)
T ss_dssp             -----CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH-HC--
T ss_pred             CCcchHHHHHcCCChhhcCCeEEEECCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence                              36899998887899999999999999998 7643

>2z9v_A Aspartate aminotransferase; pyridoxamine, pyruvate; HET: PXM; 1.70A {Mesorhizobium loti} PDB: 2z9u_A* 2z9w_A* 2z9x_A*

Probab=99.95  E-value=2.9e-26  Score=215.04  Aligned_cols=289  Identities=13%  Similarity=0.129  Sum_probs=207.2

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~~~   97 (374)
                      +...+++++++++++.  +++++|+||++|++.+++.+     .++|     |+|++.+++|++...... ...+.    
T Consensus        42 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~g~----  107 (392)
T 2z9v_A           42 LLYEKVVDKAQKAMRLSNKPVILHGEPVLGLEAAAASL-----ISPD-----DVVLNLASGVYGKGFGYWAKRYSP----  107 (392)
T ss_dssp             HHHHHHHHHHHHHTTCSSCCEEESSCTHHHHHHHHHHH-----CCTT-----CCEEEEESSHHHHHHHHHHHHHCS----
T ss_pred             HHHHHHHHHHHHHhCCCCCEEEEeCCchHHHHHHHHHh-----cCCC-----CEEEEecCCcccHHHHHHHHHcCC----
Confidence            3467899999998875  58999999999999999988     4567     999999999987631111 10111    


Q ss_pred             ccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                              .+..++.     .|++++++++++. ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       108 --------~~~~v~~~~~~~~d~~~l~~~l~~~-~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~a~~  174 (392)
T 2z9v_A          108 --------HLLEIEVPYNEAIDPQAVADMLKAH-PEITVVSVCHHDTPSGTINP----IDAIGALVSAHGAYLIVDAVSS  174 (392)
T ss_dssp             --------CEEEEECCTTSCCCHHHHHHHHHHC-TTCCEEEEESEEGGGTEECC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             --------ceEEeeCCCCCCCCHHHHHHHHhcC-CCCcEEEEeccCCCCceecc----HHHHHHHHHHcCCeEEEEcccc
Confidence                    1111221     2799999999753 46789999999999999998    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC--------------------CCCCCCC
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE--------------------HGSTFGG  230 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--------------------~~~~~~~  230 (374)
                       ++..  .+...  ...+|++  |+||+++++. ++|++++++++.+.++...                    ....++.
T Consensus       175 -~g~~--~~~~~--~~~~d~~~~s~sK~~~~~~-g~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  248 (392)
T 2z9v_A          175 -FGGM--KTHPE--DCKADIYVTGPNKCLGAPP-GLTMMGVSERAWAKMKANPLAPRASMLSIVDWENAWSRDKPFPFTP  248 (392)
T ss_dssp             -BTTB--SCCGG--GGTCSEEEECSSSTTCCCS-CCEEEEECHHHHHHHHTCTTSCCSSTTCSGGGTTTTSTTSCCSSCC
T ss_pred             -cCCc--ccccc--cccceEEEecCcccccCCC-ceeEEEECHHHHHHhhhccCCCCceeccHHHHHhhhcccCCCCCCC
Confidence             3211  11222  2235655  5679888776 7799999988877664210                    1123355


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-e-EEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-E-VRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~-~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +..+++++.++++.+.+.   ++.++++++.+++.+.|+++  .+ .+.. . ....+.++++.++...   +..++.+.
T Consensus       249 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~l~~~  322 (392)
T 2z9v_A          249 SVSEINGLDVALDLYLNEGPEAVWARHALTAKAMRAGVTAM--GL-SVWAASDSIASPTTTAVRTPDGV---DEKALRQA  322 (392)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSSSGGGBCTTEEEEECCTTC---CHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHc--CC-eeccCCccccCCceEEEECCCCC---CHHHHHHH
Confidence            777777777788776443   45677778888888888765  22 1221 1 0124667777775433   67889999


Q ss_pred             HHHC-CeEeccCC----CCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          306 MKER-GILAKPTH----DTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       306 l~~~-Gi~v~~~~----~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      |.++ ||.++++.    .+++|+++ +...+++++++++++|+++++ ++
T Consensus       323 L~~~~gi~v~~g~~~~~~~~lRi~~~~~~~~~~~i~~~~~~l~~~~~-~~  371 (392)
T 2z9v_A          323 ARARYGVVFSSGRGETLGKLTRIGHMGPTAQPIYAIAALTALGGAMN-AA  371 (392)
T ss_dssp             HHHHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HT
T ss_pred             HHhcCCEEEecCCCCCCCCeEEEeCcccccCHHHHHHHHHHHHHHHH-Hc
Confidence            9998 99998863    68999995 437899999999999999998 65

>2ch1_A 3-hydroxykynurenine transaminase; PLP-enzyme, kynurenine pathway, transferase; HET: LLP; 2.4A {Anopheles gambiae} SCOP: c.67.1.3 PDB: 2ch2_A*

Probab=99.95  E-value=2.6e-26  Score=215.68  Aligned_cols=295  Identities=13%  Similarity=0.122  Sum_probs=208.5

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~   95 (374)
                      +...++++.++++++.+   ++++++||++|++.+++++     ..+|     |+|++.+++|++...  .+...+....
T Consensus        51 ~~~~~l~~~la~~~~~~~~~~v~~~~g~t~al~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~~  120 (396)
T 2ch1_A           51 RTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-----LEEG-----DRVLIAVNGIWAERAVEMSERYGADVR  120 (396)
T ss_dssp             HHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEECCcHHHHHHHHHHHh-----cCCC-----CeEEEEcCCcccHHHHHHHHHcCCceE
Confidence            34778999999988654   6999999999999999988     5567     999999999988631  1111111111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    +...+.    ..|+++++++++++  +++++++++++|++|.+.+    +++|.++|++||++||+||+|+ ++
T Consensus       121 ~v----~~~~~~----~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~Dea~~-~g  185 (396)
T 2ch1_A          121 TI----EGPPDR----PFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVAS-LC  185 (396)
T ss_dssp             EE----ECCTTS----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT
T ss_pred             Ee----cCCCCC----CCCHHHHHHHHHhC--CCCEEEEECCCCCCceecC----HHHHHHHHHHcCCEEEEEcccc-cc
Confidence            10    100000    13899999999853  5788899999999999997    9999999999999999999997 43


Q ss_pred             ccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCC-----------------------CCCCCCC
Q 017259          176 RSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGE-----------------------HGSTFGG  230 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------------------~~~~~~~  230 (374)
                      ..  .+.  .....+|+++  ++|.++++. ++|+++.++++++.+....                       ....++.
T Consensus       186 ~~--~~~--~~~~~~d~~~~s~~K~~~~~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  260 (396)
T 2ch1_A          186 GV--PFY--MDKWEIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV  260 (396)
T ss_dssp             TB--CCC--TTTTTCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred             CC--ccc--hhhcCcCEEEEcCCccccCCC-CeEEEEECHHHHHhhhhccCcccceEechHHHHHhhhhhcccCCCCCCC
Confidence            21  112  2223467665  459998776 7889888888777653210                       1122356


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +..++.++.++++.+.++   ++.++++++++++.+.|++++  + .+....  ...+.++++.++...   +..++.+.
T Consensus       261 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~  334 (396)
T 2ch1_A          261 ASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMG--L-DIFVKDPRHRLPTVTGIMIPKGV---DWWKVSQY  334 (396)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHT--C-CBSSCSGGGBCTTEEEEECCTTC---CHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHCC--C-eeccCCccccCCceEEEEcCCCC---CHHHHHHH
Confidence            778888888888876433   567778888888888887762  2 122111  112346777775433   67899999


Q ss_pred             HHHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          306 MKER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       306 l~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      |.++ ||.++++    ..+++||++ ++..+++++++++++|+++++ ++...
T Consensus       335 L~~~~gi~v~~g~~~~~~~~iRi~~~~~~~~~e~i~~~~~~l~~~l~-~~~~~  386 (396)
T 2ch1_A          335 AMNNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK-ATHPD  386 (396)
T ss_dssp             HHHHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HHCTT
T ss_pred             HHHhCCEEEecCccccCCCEEEEECCCCcCCHHHHHHHHHHHHHHHH-HhCcc
Confidence            9876 9999875    368999998 566799999999999999998 76433

>1yaa_A Aspartate aminotransferase; HET: PLP; 2.05A {Saccharomyces cerevisiae} SCOP: c.67.1.1

Probab=99.94  E-value=1.3e-26  Score=219.19  Aligned_cols=298  Identities=13%  Similarity=0.106  Sum_probs=196.1

Q ss_pred             CCcHHHHHHHHhccc-C-------CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           20 NDKFPVFAERLTSMF-G-------YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-~-------~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .....++++.+++++ +       .+++++  |+||++|++.+++++..   ..+|     |+|++..|+|+++...+..
T Consensus        72 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~t~g~~~a~~~~~~~~~~---~~~g-----d~Vl~~~p~~~~~~~~~~~  143 (412)
T 1yaa_A           72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK---FFPD-----KLVYLSKPTWANHMAIFEN  143 (412)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCTTHHHHHHT
T ss_pred             CCCcHHHHHHHHHHHhcCCCCCCCcceEEEEeccchHhHHHHHHHHHHH---hCCC-----CEEEEeCCCCccHHHHHHH
Confidence            444566666666654 2       578999  99999999998665542   2466     9999999999987665544


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      .+..........+  .+..    .|+++++++++++++.++++++.+++|++|.+. +.+.+++|.++|++||+++|+||
T Consensus       144 ~g~~~~~v~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~~~~~~p~nPtG~~~-~~~~l~~l~~~~~~~~~~li~De  216 (412)
T 1yaa_A          144 QGLKTATYPYWAN--ETKS----LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDT  216 (412)
T ss_dssp             TTCCEEEEECEET--TTTE----ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCceEEEEeeecC--CCCc----cCHHHHHHHHHhCCCCCEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCCEEEEec
Confidence            3322111100000  0011    179999999986533466676688889999776 79999999999999999999999


Q ss_pred             cccCCcccc---cCccc-ccCCCCC---c---EEEecccccC-Cccchhhhe--e-----CHH----HHhhcCCCCCCCC
Q 017259          170 IQSGLARSG---RMLAS-DWEEVRP---D---MVILGKALGG-GVIPVSAVL--A-----DKE----VMLCIQPGEHGST  227 (374)
Q Consensus       170 a~~~~~~~g---~~~~~-~~~~~~~---d---~~s~sK~~~~-G~~~~G~~~--~-----~~~----~~~~~~~~~~~~~  227 (374)
                      +|+++.+.+   ..... ......+   +   +.|+||.+++ |+ |+||++  +     +++    +.+.+........
T Consensus       217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~sK~~~~~Gl-riG~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~  295 (412)
T 1yaa_A          217 AYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV  295 (412)
T ss_dssp             SCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTT
T ss_pred             ccccccCCcccchhHHHHHHHhcCCCCcceEEEeccCCCCCCcCC-cceEEEEEecCCCCCHHHHHHHHHHHHHHHhhcc
Confidence            999876543   22122 1111122   2   3489999997 99 999987  6     555    6666654222334


Q ss_pred             CCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhH
Q 017259          228 FGGNPLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      ..++.+++.++.++++...        .++..++++++++++.+.|++..... ++....+..+.+.|+.+       +.
T Consensus       296 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~  367 (412)
T 1yaa_A          296 SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTPG-NWDHIVNQCGMFSFTGL-------TP  367 (412)
T ss_dssp             SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSS-CCTHHHHCCSSEEECCC-------CH
T ss_pred             CCCChHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC-CeeeeccCceEEEeeCC-------CH
Confidence            4558899998888887542        12455666667777777776653100 01111122234444322       24


Q ss_pred             HHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..+...+.++||.+.+    ++||+++. .+++++++++++|+++++
T Consensus       368 ~~~~~~l~~~gi~v~~----~~Ris~~~-~~~~~i~~~~~~l~~~~~  409 (412)
T 1yaa_A          368 QMVKRLEETHAVYLVA----SGRASIAG-LNQGNVEYVAKAIDEVVR  409 (412)
T ss_dssp             HHHHHHHHHHCEECCT----TSEEEGGG-CCTTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCEEecc----CcEEEEcc-CCHhHHHHHHHHHHHHHH
Confidence            4564445578999987    47999774 489999999999999987

>1e5e_A MGL, methionine gamma-lyase; methionine biosynthesis, PLP-dependent enzymes, C-S gamma lyase; HET: PPJ; 2.18A {Trichomonas vaginalis} SCOP: c.67.1.3 PDB: 1e5f_A*

Probab=99.94  E-value=4.1e-26  Score=214.99  Aligned_cols=289  Identities=11%  Similarity=0.060  Sum_probs=199.4

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ...+..+++++.+++++|.+++++++||++|+..+++.+     .++|     |+|++..|.|++..........     
T Consensus        59 ~~~~~~~~l~~~ia~~~g~~~~i~~~~g~~ai~~~~~~l-----~~~g-----d~Vl~~~~~y~~~~~~~~~~~~-----  123 (404)
T 1e5e_A           59 LGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTI-----LKAG-----DHLISDECLYGCTHALFEHALT-----  123 (404)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHHH-----
T ss_pred             CcChHHHHHHHHHHHHhCCCcEEEeCChHHHHHHHHHHH-----hCCC-----CEEEEeCCCchhHHHHHHHHHH-----
Confidence            446677799999999999889999999999999999887     5667     9999999999775442110000     


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEeccccCCcc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLAR  176 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea~~~~~~  176 (374)
                          .....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++ ||+++|+||+|+++..
T Consensus       124 ----~~g~~~~~v~~~d~~~l~~~i~---~~t~~v~l~~p~NptG~v~~----l~~i~~la~~~~~~~li~De~~~~~~~  192 (404)
T 1e5e_A          124 ----KFGIQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNTFCSPMI  192 (404)
T ss_dssp             ----HTTCEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECTTTCTTT
T ss_pred             ----HcCCEEEEECCCCHHHHHHhcC---CCCcEEEEECCCCCCCcccC----HHHHHHHHHhhcCCEEEEECCCchhhh
Confidence                0012345556668899998887   57999999999999999997    9999999999 9999999999996532


Q ss_pred             cccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCCC-CCCCCHHHHHHHHHHHHHHhhhcHHH
Q 017259          177 SGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHGS-TFGGNPLASAVAIASLDVIRDEKLAE  252 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~~-~~~~~~~~~~aa~~al~~~~~~~~~~  252 (374)
                      . .++  . ++.+..+.|+||.+++ |+ |+ |++++++++++ .+....... ....+++.+.++.++++.+  +...+
T Consensus       193 ~-~~~--~-~~~di~~~S~sK~~~~~g~-ri~G~~~~~~~~~~~~l~~~~~~~~g~~~~~~~~~~~~~~l~~~--~~~~~  265 (404)
T 1e5e_A          193 T-NPV--D-FGVDVVVHSATKYINGHTD-VVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL--NIRMK  265 (404)
T ss_dssp             C-CGG--G-GTCSEEEEETTTTTTCSSC-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH--HHHHH
T ss_pred             C-Ccc--c-cCCEEEEEcCccccCCCCC-CeEEEEEECHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHhHhHH--HHHHH
Confidence            2 121  1 2322223488999985 77 97 99999998877 776544443 4567888888888877643  12344


Q ss_pred             HHHHHHHHHHHHHHHHH----HhCCCc-----ee----eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---
Q 017259          253 RSAHLGEELRQHLFKIQ----QQFPNY-----VK----EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---  316 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~----~~~~~~-----~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---  316 (374)
                      +...+.+.+.+.+++..    ..++..     ..    ..++.+.++.|.+++     ...++.+.+.+.||++...   
T Consensus       266 ~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~~~~-----~~~~~~~~l~~~~i~~~~~s~G  340 (404)
T 1e5e_A          266 AESENAMKVAEYLKSHPAVEKVYYPGFEDHEGHDIAKKQMRMYGSMITFILKS-----GFEGAKKLLDNLKLITLAVSLG  340 (404)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEECTTCSSSTTHHHHHHHCSSCCSEEEEEETT-----HHHHHHHHHHTCSSSEESSCCC
T ss_pred             HHHHHHHHHHHHHHhCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEeCC-----CHHHHHHHHHhCCCceeccCCC
Confidence            44555555555554431    001100     00    012347788877753     2344556666778744321   


Q ss_pred             -------------------------C--CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          317 -------------------------H--DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       317 -------------------------~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                                               +  .+++|++++.    |+++++++.|+++++ .+
T Consensus       341 ~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~----e~~~~li~~l~~al~-~~  395 (404)
T 1e5e_A          341 GCESLIQHPASMTHAVVPKEEREAAGITDGMIRLSVGI----EDADELIADFKQGLD-AL  395 (404)
T ss_dssp             SSSCEEECGGGTTTTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH-HH
T ss_pred             CcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCC----CCHHHHHHHHHHHHH-HH
Confidence                                     1  4799999665    788999999988887 43

>1cs1_A CGS, protein (cystathionine gamma-synthase); lyase, LLP-dependent enzymes, methionine biosynthesis; HET: LLP DHD; 1.50A {Escherichia coli} SCOP: c.67.1.3

Probab=99.94  E-value=4.1e-26  Score=213.88  Aligned_cols=293  Identities=15%  Similarity=0.140  Sum_probs=202.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..+.++++...+++++|+++++.++.++++||++|++.+++.+     .++|     |+|++..++||+..........
T Consensus        44 ~~~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----~~vl~~~~~~~~~~~~~~~~~~  113 (386)
T 1cs1_A           44 HDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVF-----LKPG-----DLLVAPHDCYGGSYRLFDSLAK  113 (386)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHHHT
T ss_pred             cceeCCCCccHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEecCCcHhHHHHHHHHHH
Confidence            33445667788999999999998777777788899999999988     4566     9999999999874332211111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       114 ~---------~g~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~De~~~  177 (386)
T 1cs1_A          114 R---------GCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFL  177 (386)
T ss_dssp             T---------TSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             h---------cCCEEEEeCCCCHHHHHHhhc---cCCcEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         113345556679999999998   47889999999999999998    9999999999999999999999


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++... ..  .   ...+|++  |++|.+++ |. ++ |++++++ ++.+.+.......+...+++++.++.++++.+. 
T Consensus       178 ~~~~~-~~--~---~~~~di~~~s~sK~~~~~~~-~~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~-  249 (386)
T 1cs1_A          178 SPALQ-NP--L---ALGADLVLHSCTKYLNGHSD-VVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLV-  249 (386)
T ss_dssp             CTTTC-CG--G---GGTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHH-
T ss_pred             ccccC-Cc--c---ccCceEEEEcCcccccCCCC-ceeEEEEeCcHHHHHHHHHHHHhcCCCCCHHHHHHHHhcccHHH-
Confidence            66332 11  1   1234544  88999985 55 66 8888875 777777654333345568888777776665432 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHh----CCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQ----FPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                       ...++..++.+++.+.++++...    ++....         ..++.+.++.+.+++     ...++.+.|.++||.++
T Consensus       250 -~~~~~~~~~~~~l~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~l~~~gi~~~  323 (386)
T 1cs1_A          250 -PRMELAQRNAQAIVKYLQTQPLVKKLYHPSLPENQGHEIAARQQKGFGAMLSFELDG-----DEQTLRRFLGGLSLFTL  323 (386)
T ss_dssp             -HHHHHHHHHHHHHHHHHTTCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS-----CHHHHHHHHHTCSSSEE
T ss_pred             -HHHHHHHHHHHHHHHHHhcCCCeEEEECCCCCCCccHHHHHHhcCCCceEEEEEECC-----CHHHHHHHHHhCCcceE
Confidence             23445555566665555442100    010000         012347788887753     25678888888999886


Q ss_pred             c---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          315 P---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       315 ~---~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .   +                           ..+++|++++...++++++.+.++|+++.
T Consensus       324 ~~~~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~~~~~i~~l~~al~~~~  384 (386)
T 1cs1_A          324 AESLGGVESLISHAATMTHAGMAPEARAAAGISETLLRISTGIEDGEDLIADLENGFRAAN  384 (386)
T ss_dssp             BSCCCSSSCEEEEGGGTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHT
T ss_pred             cccCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            3   1                           14799999998777888887777776553

>2huf_A Alanine glyoxylate aminotransferase; alpha and beta protein, PLP-dependent transferase; HET: LLP; 1.75A {Aedes aegypti} PDB: 2hui_A* 2huu_A*

Probab=99.94  E-value=5.2e-26  Score=213.43  Aligned_cols=294  Identities=12%  Similarity=0.107  Sum_probs=203.7

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-cccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-SMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-~~~~~~~   95 (374)
                      .+...++++++++++|.+   ++++++||++|++.+++.+     ..+|     |+|++.+++|++...... ...+...
T Consensus        51 ~~~~~~l~~~la~~~g~~~~~~i~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g~~~  120 (393)
T 2huf_A           51 LKIMDDIKEGVRYLFQTNNIATFCLSASGHGGMEATLCNL-----LEDG-----DVILIGHTGHWGDRSADMATRYGADV  120 (393)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHH-----hCCC-----CEEEEECCCcchHHHHHHHHHcCCee
Confidence            456778999999988754   6899999999999999988     4567     999999999987421111 0011110


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..   .+...+.    ..|++++++++++.  +++++++++++|++|.+.+    +++|.++|++||+++|+||+|+ ++
T Consensus       121 ~~---v~~~~~~----~~d~~~l~~~i~~~--~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~li~D~a~~-~~  186 (393)
T 2huf_A          121 RV---VKSKVGQ----SLSLDEIRDALLIH--KPSVLFLTQGDSSTGVLQG----LEGVGALCHQHNCLLIVDTVAS-LG  186 (393)
T ss_dssp             EE---EECCTTC----CCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTT-BT
T ss_pred             EE---EeCCCCC----CCCHHHHHHHHhcc--CCcEEEEEccCCCccccCC----HHHHHHHHHHcCCEEEEEcccc-cC
Confidence            00   0110110    13799999999842  5788999999999999987    9999999999999999999986 32


Q ss_pred             ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC----------------------CCCC-CCC
Q 017259          176 RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE----------------------HGST-FGG  230 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~----------------------~~~~-~~~  230 (374)
                      ..  .+...  ...+|++  |+||+++|+. ++|++++++++.+.+....                      .... .+.
T Consensus       187 ~~--~~~~~--~~~~d~~~~s~sK~l~g~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  261 (393)
T 2huf_A          187 GA--PMFMD--RWEIDAMYTGSQKVLGAPP-GITPVSFSHRAVERYKRRNTKVKVYYWDMSLVGDYWGCFGRPRIYHHTI  261 (393)
T ss_dssp             TB--CCCTT--TTTCSEEECCSSSTTCCCS-SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCSCCC
T ss_pred             CC--Ccchh--hcCccEEEECCCcccccCC-CeEEEEECHHHHHHHhhcCCCCceEEEchHHHHhhhccccccCCCCCCC
Confidence            21  11211  2346766  4569987655 6689999988887765320                      0111 244


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      +..+++++.++++.+.++   ++.++++++++++.+.|+++  .+ .+..... ..+.++++.++...   +..++.+.|
T Consensus       262 ~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~L  335 (393)
T 2huf_A          262 SSTLLYGLREAIAMACEEGLPALIARHEDCAKRLYRGLQDA--GF-ELYADPKDRLSTVTTIKVPQGV---DWLKAAQYA  335 (393)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-CBSSCGGGBCTTEEEEECCTTC---CHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHc--CC-eeccCccccCCcEEEEEcCCCC---CHHHHHHHH
Confidence            666777777788776432   46677778888888888765  22 1221110 12346777775332   578899999


Q ss_pred             HHC-CeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KER-GILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~~-Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++ ||.++++    ..+++||++ ++..+++++++++++|+++++ ++
T Consensus       336 ~~~~gi~v~~g~~~~~~~~~Ri~~~~~~~~~e~i~~~~~~l~~~~~-~~  383 (393)
T 2huf_A          336 MKTYLVEISGGLGPTAGQVFRIGLMGQNATTERVDRVLQVFQEAVA-AV  383 (393)
T ss_dssp             HHHHCEECBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HH
T ss_pred             HHhCCEEEecCcccccCCEEEEEcccCcCCHHHHHHHHHHHHHHHH-Hc
Confidence            875 9999886    358999998 555689999999999999998 65

>3e9k_A Kynureninase; kynurenine-L-hydrolase, kynurenine hydrolase, pyridoxal-5'-phosphate, inhibitor complex, 3-hydroxy hippur hydroxyhippuric acid, PLP; HET: PLP 3XH; 1.70A {Homo sapiens} PDB: 2hzp_A*

Probab=99.94  E-value=9.5e-26  Score=216.56  Aligned_cols=302  Identities=17%  Similarity=0.143  Sum_probs=211.6

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc----cCCc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM----SCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~----~~~~   94 (374)
                      +..+++++++++++|.  +++++++|++++++.+++.+.     ++|  .++++|++..++||+........    +...
T Consensus       111 ~~~~~l~~~la~~~g~~~~~v~~t~g~t~al~~~~~~~~-----~~~--~~~~~Vl~~~~~~~s~~~~~~~~~~~~G~~~  183 (465)
T 3e9k_A          111 TGDESIVGLMKDIVGANEKEIALMNALTVNLHLLMLSFF-----KPT--PKRYKILLEAKAFPSDHYAIESQLQLHGLNI  183 (465)
T ss_dssp             GTTHHHHGGGHHHHTCCGGGEEECSCHHHHHHHHHHHHC-----CCC--SSSCEEEEETTCCHHHHHHHHHHHHHTTCCH
T ss_pred             HhHHHHHHHHHHHcCCCcCCEEEECCHHHHHHHHHHHhc-----ccc--CCCCEEEEcCCcCCchHHHHHHHHHHcCCcc
Confidence            4557789999998875  489999999999999999883     333  12378999999998855433221    1111


Q ss_pred             ccc-ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           95 EAI-RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        95 ~~~-~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ... ....+...+..    -|+++++++|+++.++++++++++++|++|.+.+    +++|.++|++||+++|+|++|+.
T Consensus       184 ~~~~v~~~~~~~~~~----~d~~~l~~~i~~~~~~~~lv~~~~~~n~tG~~~~----l~~i~~la~~~g~~vi~D~a~~~  255 (465)
T 3e9k_A          184 EESMRMIKPREGEET----LRIEDILEVIEKEGDSIAVILFSGVHFYTGQHFN----IPAITKAGQAKGCYVGFDLAHAV  255 (465)
T ss_dssp             HHHEEEECCCTTCSS----CCHHHHHHHHHHHGGGEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTTT
T ss_pred             eeeeEEEecCCCCCc----cCHHHHHHHHHhcCCCeEEEEEeCcccCcceeec----HHHHHHHHHHcCCEEEEEhhhhc
Confidence            000 00011100010    1799999999866568999999999999999998    99999999999999999999972


Q ss_pred             CcccccCcccccCCCCCcEE--Eeccccc-CCccchhhheeCHHHHhhcCCCCCC---------------C---------
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALG-GGVIPVSAVLADKEVMLCIQPGEHG---------------S---------  226 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~---------------~---------  226 (374)
                      . ..  .+...  ....|++  +++|.+. |+. ++|+++.++++.+.+.+...+               .         
T Consensus       256 g-~~--~~~~~--~~~~D~~~~s~~K~l~~gp~-~~g~l~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  329 (465)
T 3e9k_A          256 G-NV--ELYLH--DWGVDFACWCSYKYLNAGAG-GIAGAFIHEKHAHTIKPALVGWFGHELSTRFKMDNKLQLIPGVCGF  329 (465)
T ss_dssp             T-TS--CCCHH--HHTCCEEEECSSSTTCCCTT-CCCEEEECGGGTTTSCCSSCCGGGBCHHHHTTCCSCCCBCSSGGGG
T ss_pred             C-Cc--CCchh--hcCCCEEEECcccccccCCC-ceEEEEEcHHHHhhcCCcccCccCCCCCcccccCCCcCcCCChHHh
Confidence            1 11  11111  2345655  5669995 444 678999998887776543221               0         


Q ss_pred             -CCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHh------CCCceee----EEEEeeeEEEEecc
Q 017259          227 -TFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ------FPNYVKE----VRGRGLFNAVEFDK  292 (374)
Q Consensus       227 -~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~------~~~~~~~----~~~~g~~~~~~~~~  292 (374)
                       ..+++.+++++..++++.+.+   +++.++.+++.+++.+.|++....      .+++...    ....+.++++.++.
T Consensus       330 ~~gt~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~~~~~~~g~~~~~p~~~~~~g~~~~~~~~~  409 (465)
T 3e9k_A          330 RISNPPILLVCSLHASLEIFKQATMKALRKKSVLLTGYLEYLIKHNYGKDKAATKKPVVNIITPSHVEERGCQLTITFSV  409 (465)
T ss_dssp             CCSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHCC---------CEEECSCSSGGGBCSCEEEEECC
T ss_pred             ccCCccHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhccccccccCCCCeEEeCCCCHhhcccEEEEEecC
Confidence             115577788888888887655   356777777888888877764100      0122111    11247888888762


Q ss_pred             CCCchhHHHHHHHHHHCCeEeccCCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          293 TALPVSAYDICLKMKERGILAKPTHDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       293 ~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                           +..++.+.|.++||.++...++++|+++ +..++++|++++++.|+++++ +.
T Consensus       410 -----~~~~l~~~L~~~Gi~v~~~~~~~iRis~~~~~~t~edi~~~~~~l~~~l~-~~  461 (465)
T 3e9k_A          410 -----PNKDVFQELEKRGVVCDKRNPNGIRVAPVPLYNSFHDVYKFTNLLTSILD-SA  461 (465)
T ss_dssp             -----TTCCHHHHHHTTTEECEEETTTEEEEBCCTTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred             -----CHHHHHHHHHHCCEEEecCCCCEEEEeCcccCCCHHHHHHHHHHHHHHHH-hc
Confidence                 4578999999999999877789999998 899999999999999999998 54

>3fsl_A Aromatic-amino-acid aminotransferase; tyrosine aminotransferase, pyridoxal phosphate, internal ALD schiff base, amino-acid biosynthesis; HET: PLR; 2.35A {Escherichia coli k-12} SCOP: c.67.1.1 PDB: 3tat_A*

Probab=99.94  E-value=2.8e-26  Score=215.59  Aligned_cols=288  Identities=13%  Similarity=0.096  Sum_probs=190.2

Q ss_pred             CcHHHHHHHHhccc--------CCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259           21 DKFPVFAERLTSMF--------GYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~   90 (374)
                      ....++++.+++++        ..+  ++++|+|+++|++.+++++..   ..+|     |+|++..|+|+++...+...
T Consensus        70 ~g~~~lr~~la~~~~~~~~~~~~~~~~~i~~t~g~~~a~~~~~~~~~~---~~~g-----d~vl~~~p~~~~~~~~~~~~  141 (397)
T 3fsl_A           70 EGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR---YFPE-----SGVWVSDPTWENHVAIFAGA  141 (397)
T ss_dssp             TCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HCTT-----CCEEEESSCCHHHHHHHHHT
T ss_pred             CchHHHHHHHHHHHhcCCcccccccceEEEEcCCcHHHHHHHHHHHHh---cCCC-----CeEEEeCCCchhHHHHHHHc
Confidence            33445555555543        256  899999999999999765431   4567     99999999998876555444


Q ss_pred             cCCccccccCCCCCCCceeccC----C---CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDF----G---DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI  163 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~----~---d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i  163 (374)
                      +..             +..+++    +   |++++++++++++++++++++++++|++|.+. +.+.+++|.++|++||+
T Consensus       142 g~~-------------~~~~~~~~~~~~~~d~~~l~~~l~~~~~~~~~v~~~~p~nptG~~~-~~~~l~~l~~~~~~~~~  207 (397)
T 3fsl_A          142 GFE-------------VSTYPWYDEATNGVRFNDLLATLKTLQAGSIVLLHPCCHNPTGADL-TNDQWDAVIEILKAREL  207 (397)
T ss_dssp             TCC-------------EEEECCEETTTTEECHHHHHHHHTTCCTTCEEEECSSSCTTTCCCC-CHHHHHHHHHHHHHTTC
T ss_pred             CCc-------------eEEEeeeeccCCcCcHHHHHHHHHhCCCCCEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHhCCE
Confidence            322             222332    2   79999999987656789999999999999877 78899999999999999


Q ss_pred             EEEEeccccCCcccc--cCcccc----cCCCCCcEEEeccccc-CCccchhhhee---CHHHHhhcCCC----CCCCCCC
Q 017259          164 LMIADEIQSGLARSG--RMLASD----WEEVRPDMVILGKALG-GGVIPVSAVLA---DKEVMLCIQPG----EHGSTFG  229 (374)
Q Consensus       164 ~li~Dea~~~~~~~g--~~~~~~----~~~~~~d~~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~~----~~~~~~~  229 (374)
                      ++|+||+|+++.+.+  ......    ..+....+.|+||.++ +|+ |+||+++   ++++++.+...    ....+..
T Consensus       208 ~li~De~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-riG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  286 (397)
T 3fsl_A          208 IPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRVLGQLKATVRRNYSS  286 (397)
T ss_dssp             EEEEEESCTTSSSCTTGGGHHHHHHHHTTCCEEEEEECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSS
T ss_pred             EEEEecCchhhccCcccccHHHHHHHhcCCCEEEEecccccccCcCC-CeeEEEEecCCHHHHHHHHHHHHHHHHhccCC
Confidence            999999999876542  111111    1122222448999999 799 9999864   44544433211    1123334


Q ss_pred             CCHHHHHHHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHH
Q 017259          230 GNPLASAVAIASLDVI------R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYD  301 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~  301 (374)
                      .+.+++.++.++++..      .  .++..++++++++++.+.|++..... ++....+..+.+.|+.+       ....
T Consensus       287 ~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~-~~~~~~~~~~~~~~~~~-------~~~~  358 (397)
T 3fsl_A          287 PPNFGAQVVAAVLNDEALKASWLKEVEEMRTRILAMRQELVKVLSTEMPER-NFDYLLNQRGMFSYTGL-------SAAQ  358 (397)
T ss_dssp             CCSHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTS-CCTHHHHCCSSEEECCC-------CHHH
T ss_pred             CCHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCC-CceeecCCceEEEecCC-------CHHH
Confidence            4667777666555421      1  12456667777777777776653110 11111122345555433       2455


Q ss_pred             HHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          302 ICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      +.+.|.++||.+.+++    ||+++ ..+++++++++++|+++
T Consensus       359 ~~~~l~~~gi~v~~g~----Ris~~-~~~~~~i~~~~~~l~~~  396 (397)
T 3fsl_A          359 VDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAV  396 (397)
T ss_dssp             HHHHHHTTCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             HHHHHHhCCEEECCCC----eEEEE-ecCHhhHHHHHHHHHhh
Confidence            6777778899999875    99875 33667899999999876

>1jg8_A L-ALLO-threonine aldolase; glycine biosynthesis, pyridoxal-5'- phosphate, calcium binding site, structural genomics, PSI; HET: LLP; 1.80A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1lw4_A* 1lw5_A* 1m6s_A* 2fm1_A*

Probab=99.94  E-value=7.4e-26  Score=208.87  Aligned_cols=295  Identities=15%  Similarity=0.147  Sum_probs=200.1

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--cccccC-Cc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSC-DN   94 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~~-~~   94 (374)
                      ++.+...+++++|++++|.+.+++++||++|+..+++++     .++|     |+|++.+|+|.+....  .....+ ..
T Consensus        35 ~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~~~  104 (347)
T 1jg8_A           35 GEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAH-----TQRG-----DEVILEADSHIFWYEVGAMAVLSGVMP  104 (347)
T ss_dssp             TCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEETTCHHHHSSTTHHHHHTCCEE
T ss_pred             CCChHHHHHHHHHHHHhCCceEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEcCcchhhhccccchhhccCeEE
Confidence            446678899999999999999999999999999998877     5677     9999999997442221  111111 11


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCC-CcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEA-GVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~-g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ...   ..  .+..    .|++++++++++.   .++++++++++++|++ |.+. +.+.+++|.++|++||++||+||+
T Consensus       105 ~~v---~~--~~~~----~d~~~l~~~i~~~~~~~~~~~~v~~~~~~npt~G~~~-~~~~l~~i~~~a~~~~~~li~D~a  174 (347)
T 1jg8_A          105 HPV---PG--KNGA----MDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVV-PLENIKEICTIAKEHGINVHIDGA  174 (347)
T ss_dssp             EEE---CE--ETTE----ECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHHTCEEEEEET
T ss_pred             EEe---cC--CCCc----cCHHHHHHHhccccccccCceEEEEeccccccCCccC-cHHHHHHHHHHHHHCCCEEEeehh
Confidence            100   00  0010    1799999988742   1368999999999998 6555 788999999999999999999998


Q ss_pred             ccC--CcccccCcccccCCCCCc--EEEecccccCCccchh-hheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHH
Q 017259          171 QSG--LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVS-AVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       171 ~~~--~~~~g~~~~~~~~~~~~d--~~s~sK~~~~G~~~~G-~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~  243 (374)
                      |..  +...+..  ........|  +.++||+++++   +| +++.++++++.+...  ..+.+...+.+.++++..+++
T Consensus       175 ~~~~~~~~~~~~--~~~~~~~~d~~~~s~sK~l~~~---~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~  249 (347)
T 1jg8_A          175 RIFNASIASGVP--VKEYAGYADSVMFCLSKGLCAP---VGSVVVGDRDFIERARKARKMLGGGMRQAGVLAAAGIIALT  249 (347)
T ss_dssp             THHHHHHHHCCC--HHHHHHTCSEEEEESSSTTCCS---SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHHHHHHHHHH
T ss_pred             hhhcchhhcCCC--hHHhcccccEEEEecccccCCC---ceEEEEcCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHHHH
Confidence            751  1111211  111111223  34789998743   45 466787777655321  122333445666666667776


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEeccCCCCEEE
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAKPTHDTIVR  322 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lR  322 (374)
                      ...+ . .++..++.+++.+.|+++ . + .+. ..+..+.++++.++. ..   +..++.+.|.++||.+++.+.+++|
T Consensus       250 ~~~~-~-~~~~~~~~~~l~~~L~~~-~-~-~~~-~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~~~~~iR  320 (347)
T 1jg8_A          250 KMVD-R-LKEDHENARFLALKLKEI-G-Y-SVN-PEDVKTNMVILRTDNLKV---NAHGFIEALRNSGVLANAVSDTEIR  320 (347)
T ss_dssp             HSST-T-HHHHHHHHHHHHHHHHHH-T-C-BCC-GGGCCSSEEEEECTTSSS---CHHHHHHHHHHHTEECEEEETTEEE
T ss_pred             HHHH-H-HHHHHHHHHHHHHHHHhc-C-c-eec-cCCCcceEEEEEcccccC---CHHHHHHHHHHCCCEEecCCCCeEE
Confidence            5322 2 344445678888888776 2 2 111 112356778887763 22   5789999999999999987778999


Q ss_pred             EecCCCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++...+++++++++++|+++++
T Consensus       321 l~~~~~~~~e~i~~~~~~l~~~l~  344 (347)
T 1jg8_A          321 LVTHKDVSRNDIEEALNIFEKLFR  344 (347)
T ss_dssp             EECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEeCCCCCHHHHHHHHHHHHHHHH
Confidence            998888899999999999999887

>4hvk_A Probable cysteine desulfurase 2; transferase and ISCS, transferase; HET: PMP PG4; 1.43A {Archaeoglobus fulgidus} PDB: 4eb7_A* 4eb5_A*

Probab=99.94  E-value=1.1e-25  Score=209.92  Aligned_cols=290  Identities=15%  Similarity=0.101  Sum_probs=197.1

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .+..++++++++++++.+  ++++++|+++|++.+++++.... .++|     |+|++.+++|++.......+... +  
T Consensus        42 ~~~~~~~~~~la~~~~~~~~~i~~~~g~~~a~~~~~~~~~~~~-~~~g-----d~vi~~~~~~~~~~~~~~~~~~~-g--  112 (382)
T 4hvk_A           42 REAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN-ARKG-----KHILVSAVEHMSVINPAKFLQKQ-G--  112 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCTTEEEEEESSHHHHHHHHHHHHHHHH-GGGC-----CEEEEETTCCHHHHHHHHHHHHT-T--
T ss_pred             HHHHHHHHHHHHHHcCCCcCeEEEECCchHHHHHHHHHhhhhh-cCCC-----CEEEECCCCcHHHHHHHHHHHhc-C--
Confidence            345668999999988764  79999999999999999885211 2567     99999999987765443332110 1  


Q ss_pred             ccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                             ..+..++.+     |+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||+ ||+|++|+
T Consensus       113 -------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~-li~D~a~~  177 (382)
T 4hvk_A          113 -------FEVEYIPVGKYGEVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAA-LHIDATAS  177 (382)
T ss_dssp             -------CEEEEECBCTTSCBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHSSSSE-EEEECTTT
T ss_pred             -------CEEEEeccCCCCCcCHHHHHHHhc---cCceEEEEECCCCCceeeCC----HHHHHHHHHHcCE-EEEEhHHh
Confidence                   111222221     7999999887   57899999999999999998    9999999999999 99999987


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHH
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~  243 (374)
                       ++..  .+.....  ..|++  |++|.++ +. ++|+++.+++.  .+.+...       ......+..++.++.++++
T Consensus       178 -~~~~--~~~~~~~--~~d~~~~s~~K~~g-~~-g~g~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~  248 (382)
T 4hvk_A          178 -VGQI--EVDVEKI--GADMLTISSNDIYG-PK-GVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAE  248 (382)
T ss_dssp             -BTTB--CCCHHHH--TCSEEEEESGGGTS-CT-TCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHH
T ss_pred             -cCCC--CCCchhc--CCCEEEEeHHHhcC-CC-ceEEEEEcCcc--CcCcccccCCCcCccccCCcCHHHHHHHHHHHH
Confidence             2111  1111112  24554  6779654 33 56777776553  3332211       1133457777877778877


Q ss_pred             HHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE---EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259          244 VIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-  317 (374)
Q Consensus       244 ~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-  317 (374)
                      .+.+  +++.++.+++.+++.+.|++    +|++....   ...+.++.+.++..    +..++.+.|.++||.++++. 
T Consensus       249 ~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~  320 (382)
T 4hvk_A          249 ITAMEWREEAERLRRLRDRIIDNVLK----IEESYLNGHPEKRLPNNVNVRFSYI----EGESIVLSLDMAGIQASTGSA  320 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHTT----STTEEECSCSSSBCTTEEEEEETTC----CHHHHHHHHHHTTCBCBCC--
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHhc----CCCeEEeCCccccCCCEEEEEECCC----CHHHHHHHHHHCCEEEeeCCc
Confidence            6543  24455555666666665543    32221111   11134666666543    67889999999999998753 


Q ss_pred             ----------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          318 ----------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       318 ----------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                                            .+++|++++...+++++++++++|+++++ ++.+
T Consensus       321 ~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~t~e~i~~~~~~l~~~~~-~~~~  375 (382)
T 4hvk_A          321 CSSKTLQPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE-RLRS  375 (382)
T ss_dssp             ------CCCHHHHHTTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred             cCCCCCcchHHHHHcCCChhhcCCeEEEEcCCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence                                  58999999988999999999999999998 6543

>1uu1_A Histidinol-phosphate aminotransferase; histidine biosynthesis, pyridoxal phosphate, complete proteome; HET: PMP HSA; 2.38A {Thermotoga maritima} SCOP: c.67.1.1 PDB: 1uu0_A 1h1c_A* 1uu2_A* 2f8j_A*

Probab=99.94  E-value=3e-26  Score=210.68  Aligned_cols=274  Identities=13%  Similarity=0.085  Sum_probs=188.8

Q ss_pred             CCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      |+.....++++.++++++     .+++++++|++++++.+++++        |     |+|++. |+|++....+...+.
T Consensus        53 y~~~~~~~lr~~la~~~~~~~~~~~~v~~~~G~~~al~~~~~~~--------g-----d~Vl~~-p~y~~~~~~~~~~g~  118 (335)
T 1uu1_A           53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLMF--------D-----RSVFFP-PTYSCYRIFAKAVGA  118 (335)
T ss_dssp             CCCSSCHHHHHHHHHHHTCSSCCGGGEEEESSHHHHHHHHHHHS--------S-----EEEECS-SSCHHHHHHHHHHTC
T ss_pred             CCCCchHHHHHHHHHHcCCCCCCHHHEEEcCChHHHHHHHHHHh--------C-----CcEEEC-CCcHHHHHHHHHcCC
Confidence            444457889999999876     358999999999999998865        5     999999 999987655443332


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ....    .+...+. .   .|++++        ++++++++++++|++|.+.+    .+++.++++..| ++|+||+|+
T Consensus       119 ~~~~----v~~~~~~-~---~d~~~l--------~~~~~v~l~~p~nptG~~~~----~~~l~~l~~~~~-~li~De~~~  177 (335)
T 1uu1_A          119 KFLE----VPLTKDL-R---IPEVNV--------GEGDVVFIPNPNNPTGHVFE----REEIERILKTGA-FVALDEAYY  177 (335)
T ss_dssp             EEEE----CCCCTTS-C---CCCCCC--------CTTEEEEEESSCTTTCCCCC----HHHHHHHHHTTC-EEEEECTTH
T ss_pred             eEEE----eccCCCC-C---CCHHHc--------CCCCEEEEeCCCCCCCCCCC----HHHHHHHHHhCC-EEEEECcch
Confidence            2111    1111110 0   133333        25778887777889998885    555555555558 899999999


Q ss_pred             CCcccccCcc-cccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh-hhc
Q 017259          173 GLARSGRMLA-SDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR-DEK  249 (374)
Q Consensus       173 ~~~~~g~~~~-~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~-~~~  249 (374)
                      ++... .... ....+....+.|+||.++ +|+ |+||+++++++.+.+...  ..+++.+++++.++.++++... .++
T Consensus       178 ~~~~~-~~~~~~~~~~~~i~~~s~sK~~g~~G~-r~G~~~~~~~~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~  253 (335)
T 1uu1_A          178 EFHGE-SYVDFLKKYENLAVIRTFSKAFSLAAQ-RVGYVVASEKFIDAYNRV--RLPFNVSYVSQMFAKVALDHREIFEE  253 (335)
T ss_dssp             HHHCC-CCGGGGGTCSSEEEEEESTTTTTCGGG-CCEEEEECHHHHHHHHHH--SCTTCSCHHHHHHHHHHHHTHHHHHH
T ss_pred             hhcch-hHHHHhhhCCCEEEEecchhhcCCccc-CeEEEEeCHHHHHHHHHh--cCCCCcCHHHHHHHHHHhCCHHHHHH
Confidence            76421 1111 111222233459999998 798 999999999988877643  2346889999999998887531 124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCC
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI  329 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~  329 (374)
                      ..++++++++++.+.|++..  + .+   .++.+.++++.++. .   +..++.+.|.++||.+++. .+++||+++   
T Consensus       254 ~~~~~~~~~~~l~~~L~~~g--~-~~---~~~~~~~~~~~~~~-~---~~~~~~~~l~~~gi~v~~~-~~~iRis~~---  319 (335)
T 1uu1_A          254 RTKFIVEERERMKSALREMG--Y-RI---TDSRGNFVFVFMEK-E---EKERLLEHLRTKNVAVRSF-REGVRITIG---  319 (335)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--C-CB---CCCCSSEEEEECCT-H---HHHHHHHHHHHHTEEEEEE-TTEEEEECC---
T ss_pred             HHHHHHHHHHHHHHHHHHCC--c-EE---cCCCCeEEEEECCC-C---CHHHHHHHHHHCCEEEEEC-CCeEEEEeC---
Confidence            56677777777777777651  2 11   23346778877764 2   5778999999999999984 689999953   


Q ss_pred             CHHHHHHHHHHHHHH
Q 017259          330 SSNELQEGSKALHDV  344 (374)
Q Consensus       330 ~~e~i~~~~~~l~~~  344 (374)
                      +++++++++++|+++
T Consensus       320 ~~~~i~~~~~~l~~~  334 (335)
T 1uu1_A          320 KREENDMILRELEVF  334 (335)
T ss_dssp             CHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhh
Confidence            578899999988753

>3qhx_A Cystathionine gamma-synthase METB (CGS); structural genomics, seattle structural genomics center for infectious disease, ssgcid, CGS_LIKE; HET: LLP EPE; 1.65A {Mycobacterium ulcerans} SCOP: c.67.1.0 PDB: 3qi6_A*

Probab=99.94  E-value=7e-26  Score=212.58  Aligned_cols=287  Identities=15%  Similarity=0.140  Sum_probs=201.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++..++++++|+++++.+++++++||++|++.+++.+     .++|     |+|++..+.|++..........
T Consensus        58 ~~y~r~~~~~~~~l~~~la~~~g~~~~~~~~sGt~A~~~al~~~-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~  127 (392)
T 3qhx_A           58 YEYARTGNPTRTALEAALAAVEDAAFGRAFSSGMAAADCALRAM-----LRPG-----DHVVIPDDAYGGTFRLIDKVFT  127 (392)
T ss_dssp             BCBTTTCCHHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHTGG
T ss_pred             ccccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCcchHHHHHHHHHH
Confidence            34445677888999999999999999999999999999999988     5567     9999999999875443321111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       128 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~g~~li~D~~~~  191 (392)
T 3qhx_A          128 G---------WNVEYTPVALADLDAVRAAIR---PTTRLIWVETPTNPLLSIAD----IAGIAQLGADSSAKVLVDNTFA  191 (392)
T ss_dssp             G---------GTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred             h---------cCcEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCcEEec----HHHHHHHHHHcCCEEEEECCCc
Confidence            1         113355666679999999987   58999999999999999988    9999999999999999999997


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-C-ccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-G-VIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G-~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      .+ ...     ...+..+|++  |++|.+++ | . ++|+++.+ +++.+.+........+..+++.+.++...++.+. 
T Consensus       192 ~~-~~~-----~~~~~~~di~~~S~sK~lg~~g~~-~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~-  263 (392)
T 3qhx_A          192 SP-ALQ-----QPLSLGADVVLHSTTKYIGGHSDV-VGGALVTNDEELDQSFAFLQNGAGAVPGPFDAYLTMRGLKTLV-  263 (392)
T ss_dssp             CT-TTC-----CGGGGTCSEEEEETTTTTTCSSCC-CCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH-
T ss_pred             cc-ccC-----ChHHhCCcEEEEcCccccCCCCCc-eEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH-
Confidence            33 111     1223355766  58899996 4 5 88998887 5777777654344456678888777777665432 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                       ...++..++.+++.+.|++.    | .+...                  ++.|.+++|.++.+.  .....+.+.|...
T Consensus       264 -~~~~~~~~~~~~l~~~L~~~----~-~v~~v~~p~l~~~~~~~~~~~~~~g~g~~~~~~l~~~~--~~~~~~~~~l~~~  335 (392)
T 3qhx_A          264 -LRMQRHSENAAAVAEFLAEH----P-AISTVLYPGLPSHPGHAVAARQMRGFGGMVSVRMRAGR--TAAEQLCAKTNIF  335 (392)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTC----T-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTCH--HHHHHHHHHCSSS
T ss_pred             -HHHHHHHHHHHHHHHHHhcC----C-CcceEECCCCCCCCCHHHHHHhCCCCceEEEEEeCCcH--HHHHHHHHhCCCc
Confidence             22455556666666655442    2 22111                  334788999987521  1466777777666


Q ss_pred             CeEeccC------------------------CCCEEEEecCCCCCHHHHHHHHHHH
Q 017259          310 GILAKPT------------------------HDTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       310 Gi~v~~~------------------------~~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      |+.++.+                        .++.+|++++...++++++.+.++|
T Consensus       336 ~~~~s~G~~~sl~~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~~~i~~l~~al  391 (392)
T 3qhx_A          336 ILAESLGSVESLIEHPSAMTHASTAGSQLEVPDDLVRLSVGIEDVADLLDDLKQAL  391 (392)
T ss_dssp             EECSCCCCSSCEEECGGGTSCGGGBTTBCCCCTTEEEEECCSSCHHHHHHHHHHHH
T ss_pred             eECCCCCCCCceeeCcccccccccCHHHcCCCCCeEEEEeccCCHHHHHHHHHHHh
Confidence            6554322                        2568999977766666666555544

>3mad_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxal phosphate; HET: LLP; 2.00A {Symbiobacterium thermophilum} PDB: 3maf_A* 3mau_A* 3mbb_A*

Probab=99.94  E-value=1.2e-25  Score=218.55  Aligned_cols=293  Identities=17%  Similarity=0.106  Sum_probs=197.5

Q ss_pred             HHHHHHHhcccCCC----eE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           24 PVFAERLTSMFGYD----MV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        24 ~~l~~~l~~~~~~~----~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .++++++++++|.+    ++  ++++||++|++.++++++.++...+|  .++|+|++..++|++....+...+.     
T Consensus       142 ~~l~~~la~~~g~~~~~~~v~~~~t~ggt~a~~~al~a~~~~g~~~~g--~~~d~Vi~~~~~~~~~~~~~~~~G~-----  214 (514)
T 3mad_A          142 AEVVAMTAHMLGGDAAGGTVCGTVTSGGTESLLLAMKTYRDWARATKG--ITAPEAVVPVSAHAAFDKAAQYFGI-----  214 (514)
T ss_dssp             HHHHHHHHHHTTGGGGTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHC--CSSCEEEEETTSCTHHHHHHHHHTC-----
T ss_pred             HHHHHHHHHHcCCCCccCCcceEEcCcHHHHHHHHHHHHHHHhhhhcC--CCCCeEEEeCccchHHHHHHHHcCC-----
Confidence            34667778877765    67  99999999999999999765422233  2338999999998775544443322     


Q ss_pred             ccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           98 RGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                              ++..++++     |+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|+
T Consensus       215 --------~v~~v~~~~~~~~d~~~Le~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~i~livDea~~  279 (514)
T 3mad_A          215 --------KLVRTPLDADYRADVAAMREAIT---PNTVVVAGSAPGYPHGVVDP----IPEIAALAAEHGIGCHVDACLG  279 (514)
T ss_dssp             --------EEEEECBCTTSCBCHHHHHHHCC---TTEEEEEEETTCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred             --------eeEEeeeCCCCCCCHHHHHHHhc---cCCEEEEEeCCCCCCccccC----HHHHHHHHHHhCCeEEEecccc
Confidence                    12223322     8999999987   57999999999999999988    9999999999999999999999


Q ss_pred             CCcc-----ccc---CcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC----CC-------CCCCCCC
Q 017259          173 GLAR-----SGR---MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG----EH-------GSTFGGN  231 (374)
Q Consensus       173 ~~~~-----~g~---~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~-------~~~~~~~  231 (374)
                      ++..     .|.   .+.....+.  |++  +++|.+.+|. ++|+++.+++........    ..       ....+.+
T Consensus       280 ~~~~~~~~~~g~~~~~~~~~~~g~--d~~~~s~~K~l~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gs~~  356 (514)
T 3mad_A          280 GFILPWAERLGYPVPPFDFRLEGV--TSVSADTHKYGYGAK-GTSVILYRRPDLLHYQYFIAADWPGGLYFSPTFAGSRP  356 (514)
T ss_dssp             TTTHHHHHHTTCCCCCCSTTSTTC--CEEEECTTTTTCCCS-SCEEEEESSHHHHTTTCEEESSCTTCSEEESSSCSSCC
T ss_pred             cccchhHHhcCCCCCcccccCCCC--cEEEECchhccCCCC-CeEEEEEeCHHHhccccccccccCCCcccCCccCCCCc
Confidence            7632     222   222223333  555  5559988888 899988876554432210    00       0111233


Q ss_pred             HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          232 PLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      .....+..++++.+..   +++.++.+++.+++.+.|+++    +++...... ..++++..+..    +..++.+.|.+
T Consensus       357 ~~~~~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~-~~~~~~~~~~~----~~~~l~~~L~~  427 (514)
T 3mad_A          357 GALSATAWAAMLSLGEEGYLDATRRILQAADRLKAGVRAI----PSLKILGDP-LWVIAVASDEL----NIYQVMEEMAG  427 (514)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTCEESSCC-SSEEEEECSSS----CHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEeCCC-eEEEEEeCCCC----CHHHHHHHHHh
Confidence            3434455555555444   345666677777777777653    222211112 34666655432    67899999999


Q ss_pred             CCeEeccC-CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          309 RGILAKPT-HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       309 ~Gi~v~~~-~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      +||.+... .++.+|++++ ...+++++++++++|+++++ ++..
T Consensus       428 ~Gi~v~g~~~~~~~Ri~~~~~~~~~e~i~~~l~~L~~~l~-~~~~  471 (514)
T 3mad_A          428 RGWRLNGLHRPPAFHVALTLRHTEPGVVDRFLADLQDAVA-QVRA  471 (514)
T ss_dssp             TTCBCEEETTTTEEEEECCGGGGSTTHHHHHHHHHHHHHH-HHHH
T ss_pred             cCCEeccCCCCCeEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence            99988433 3678999976 44567999999999999998 6643

>2yrr_A Aminotransferase, class V; structural genomics, NPPSFA, national PROJ protein structural and functional analyses; HET: PLP; 1.86A {Thermus thermophilus} PDB: 2yri_A*

Probab=99.94  E-value=3.4e-26  Score=211.26  Aligned_cols=284  Identities=16%  Similarity=0.129  Sum_probs=202.5

Q ss_pred             CcHHHHHHHHhcccCC----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCcc
Q 017259           21 DKFPVFAERLTSMFGY----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~   95 (374)
                      +...++++++++++|.    +++++|+||++|++.+++.+.       +     |+|++.+++|++.... .....+   
T Consensus        33 ~~~~~l~~~la~~~g~~~~~~~v~~t~g~t~a~~~~~~~~~-------~-----d~vl~~~~~~~~~~~~~~~~~~g---   97 (353)
T 2yrr_A           33 RVNRAIQERLAALFDPGEGALVAALAGSGSLGMEAGLANLD-------R-----GPVLVLVNGAFSQRVAEMAALHG---   97 (353)
T ss_dssp             HHHHHHHHHHHHHHCCCTTCEEEEESSCHHHHHHHHHHTCS-------C-----CCEEEEECSHHHHHHHHHHHHTT---
T ss_pred             HHHHHHHHHHHHHhCCCCCCceEEEcCCcHHHHHHHHHHhc-------C-----CcEEEEcCCCchHHHHHHHHHcC---
Confidence            3477899999998875    479999999999999988662       1     6788989888875111 111111   


Q ss_pred             ccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                               ..+..++.     .|+++++++++++  +++++++++++|++|.+.+    +++|.++|++||+++|+||+
T Consensus        98 ---------~~~~~v~~~~~~~~d~~~l~~~l~~~--~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~li~D~a  162 (353)
T 2yrr_A           98 ---------LDPEVLDFPPGEPVDPEAVARALKRR--RYRMVALVHGETSTGVLNP----AEAIGALAKEAGALFFLDAV  162 (353)
T ss_dssp             ---------CCEEEEECCTTSCCCHHHHHHHHHHS--CCSEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECT
T ss_pred             ---------CceEEEeCCCCCCCCHHHHHHHHHhC--CCCEEEEEccCCCcceecC----HHHHHHHHHHcCCeEEEEcC
Confidence                     11222221     3799999999853  6788899999999999998    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC--C-------------CCCCCCCCCHH
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP--G-------------EHGSTFGGNPL  233 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~--~-------------~~~~~~~~~~~  233 (374)
                      |+ ++..  .+....  ..+|++  +++|+++++. ++|++++++++.+.++.  .             .....++.+..
T Consensus       163 ~~-~~~~--~~~~~~--~~~d~~~~s~~K~~~~~~-g~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  236 (353)
T 2yrr_A          163 TT-LGML--PFSMRA--MGVDYAFTGSQKCLSAPP-GLAPIAASLEARKAFTGKRGWYLDLARVAEHWERGGYHHTTPVL  236 (353)
T ss_dssp             TT-TTTS--CCCHHH--HTCSEEECCTTSTTCCCS-SCEEEEECHHHHHHCCCCSCSTTCHHHHHHHHTTCCCSSCCCHH
T ss_pred             cc-cccc--cccccc--cCceEEEecCcccccCCC-ceEEEEECHHHHHHhccCCCccccHHHHhhhhhcCCCCCCCCHH
Confidence            95 4322  112221  235666  4569888766 77999999998877752  0             12233456777


Q ss_pred             HHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259          234 ASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG  310 (374)
Q Consensus       234 ~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G  310 (374)
                      ++.++.++++.+.++   ++.++++++++++.+.|+++  .+ .........+.++++.++...   +..++.+.|.++|
T Consensus       237 ~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~g  310 (353)
T 2yrr_A          237 LHYALLEALDLVLEEGVAARERRAREVYAWVLEELKAR--GF-RPYPKASPLPTVLVVRPPEGV---DADRLVRALYAEG  310 (353)
T ss_dssp             HHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHT--TC-EESCSSSBCTTEEEEECCTTC---CHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHC--CC-ccccCccCCCeEEEEECCCCC---CHHHHHHHHHHCC
Confidence            888888888876443   45677777888888888764  22 111111113555677775433   6789999999999


Q ss_pred             eEeccCC----CCEEEEecCCCCCHHHHH-HHHHHHHHHHh
Q 017259          311 ILAKPTH----DTIVRLTPPLSISSNELQ-EGSKALHDVLE  346 (374)
Q Consensus       311 i~v~~~~----~~~lRi~~~~~~~~e~i~-~~~~~l~~~~~  346 (374)
                      |.++++.    .+++|++++...++++++ +++++|+++++
T Consensus       311 i~v~~g~~~~~~~~iRi~~~~~~~~~~~~~~~~~~l~~~l~  351 (353)
T 2yrr_A          311 VAVAGGIGPTRGQVLRLGLMGEGARREAYQAFLKALDRALA  351 (353)
T ss_dssp             EECEECCGGGTTTCEEEECSGGGSCHHHHHHHHHHHHHHHH
T ss_pred             EEEeCCccccCCCeEEEecCccCCHHHHHHHHHHHHHHHHh
Confidence            9998753    688999987778889999 99999999887

>3tcm_A Alanine aminotransferase 2; pyridoxal phosphate (PLP)-binding; HET: DCS; 2.71A {Hordeum vulgare}

Probab=99.94  E-value=1.5e-25  Score=216.78  Aligned_cols=303  Identities=10%  Similarity=0.055  Sum_probs=195.4

Q ss_pred             CcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           21 DKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        21 ~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ....++++.+++++        ..+++++|+|+++++..++.++.    ..+|     |.|++..|+|+++.......+.
T Consensus       134 ~G~~~lr~~ia~~~~~~~g~~~~~~~i~~t~G~~~al~~~~~~l~----~~~g-----d~Vlv~~p~y~~~~~~~~~~g~  204 (500)
T 3tcm_A          134 QGIHGLRDAIASGIASRDGFPANADDIFLTDGASPGVHLMMQLLI----RNEK-----DGILVPIPQYPLYSASIALHGG  204 (500)
T ss_dssp             TCCHHHHHHHHHHHHHHHSSCCCGGGEEEESSSHHHHHHHHHHHC----CSTT-----EEEEEEESCCTHHHHHHHHTTC
T ss_pred             cChHHHHHHHHHHHHhhcCCCCCcccEEEcCCHHHHHHHHHHHHc----CCCC-----CEEEEeCCCcHhHHHHHHHcCC
Confidence            33444555555432        35689999999999999999883    1567     9999999999877665544433


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ...... ..+. .++    ..|+++|++++++.   +.+++++++++++|++|.+. +.+.+++|+++|++||+++|+||
T Consensus       205 ~~~~~~-~~~~-~~~----~~d~~~l~~~l~~~~~~~~~~k~ivl~~p~NPtG~~~-s~~~l~~i~~la~~~~~~li~De  277 (500)
T 3tcm_A          205 ALVPYY-LNES-TGW----GLETSDVKKQLEDARSRGINVRALVVINPGNPTGQVL-AEENQYDIVKFCKNEGLVLLADE  277 (500)
T ss_dssp             EEEEEE-CBTT-TTS----BCCHHHHHHHHHHHHHTTCEEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             EEEEEe-cccc-cCC----CCCHHHHHHHHHHHHhcCCCceEEEEECCCCCCcccC-CHHHHHHHHHHHHHcCCEEEEec
Confidence            211111 0000 000    12899999999852   23688888888888899777 89999999999999999999999


Q ss_pred             cccCCccccc--Ccccc----cCC---CCCc-EE--Eecccc-c-CCccchhhhee---CHHHHhhcCCCCCCCCCCCCH
Q 017259          170 IQSGLARSGR--MLASD----WEE---VRPD-MV--ILGKAL-G-GGVIPVSAVLA---DKEVMLCIQPGEHGSTFGGNP  232 (374)
Q Consensus       170 a~~~~~~~g~--~~~~~----~~~---~~~d-~~--s~sK~~-~-~G~~~~G~~~~---~~~~~~~~~~~~~~~~~~~~~  232 (374)
                      +|.++.+.+.  ...+.    ..+   -..+ ++  ||||++ + .|+ |+||+++   ++++++.+.... ...++.+.
T Consensus       278 ay~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~i~~~S~SK~~~g~~G~-R~G~~~~~~~~~~~~~~l~~~~-~~~~~~~~  355 (500)
T 3tcm_A          278 VYQENIYVDNKKFHSFKKIVRSLGYGEEDLPLVSYQSVSKGYYGECGK-RGGYFEITGFSAPVREQIYKIA-SVNLCSNI  355 (500)
T ss_dssp             TTTTCBCCTTCCCCCHHHHHHHTTCSSSCCCEEEEEESSSTTTCCGGG-CCEEEEEESCCTTHHHHHHHHH-HTTCCCCH
T ss_pred             CccccccCCCCCCCcHHHHHHHhccccCCeEEEEEecCCccCCCCCcc-ceEEEEEeCCCHHHHHHHHHHH-hcccCCCH
Confidence            9997644322  11111    111   1122 22  899999 5 588 9999887   788877776432 34566788


Q ss_pred             HHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCC----
Q 017259          233 LASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTAL----  295 (374)
Q Consensus       233 ~~~~aa~~al~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~----  295 (374)
                      +++.++..+++           +... +.+.++++++++++.+.|+++    |++ ....+. +.+.|+.+.....    
T Consensus       356 ~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~~----~g~-~~~~~~g~~~~~~~~~lp~~~~~~  430 (500)
T 3tcm_A          356 TGQILASLVMNPPKASDESYASYKAEKDGILASLARRAKALEHAFNKL----EGI-TCNEAEGAMYVFPQICLPQKAIEA  430 (500)
T ss_dssp             HHHHHHHHHHSCCCSSSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTE-ECCCCCBTTEECCEECCCHHHHHH
T ss_pred             HHHHHHHHHhcCccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC----CCc-EEecCCeEEEEeeeecCchhhHHH
Confidence            88888777764           1111 234555666666666666543    322 223334 4444533321100    


Q ss_pred             ----ch-hHHHHH-HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 ----PV-SAYDIC-LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ----~~-~~~~~~-~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                          +. ....++ +.|.++||.+.|+       +.+++|+++.  .+++++++++++|+++++ ++
T Consensus       431 ~~~~g~~~~~~~~~~ll~~~gI~v~pg~~f~~~~g~~~iRis~~--~~~e~i~~~i~~l~~~~~-~~  494 (500)
T 3tcm_A          431 AKAANKAPDAFYALRLLESTGIVVVPGSGFGQVPGTWHFRCTIL--PQEDKIPAVISRFTVFHE-AF  494 (500)
T ss_dssp             HHHHTSCHHHHHHHHHHHHHCEECEESTTTCCCTTCCBEEEESC--SCTTTHHHHHHHHHHHHH-HH
T ss_pred             HHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEEC--CCHHHHHHHHHHHHHHHH-HH
Confidence                00 122334 4455679999875       2458999966  788999999999999887 54

>3ihj_A Alanine aminotransferase 2; helix, structural genomics, structural genomics consortium, pyridoxal phosphate; HET: PLP; 2.30A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=216.32  Aligned_cols=300  Identities=13%  Similarity=0.091  Sum_probs=195.8

Q ss_pred             CCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           20 NDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      .++++.+++.+.+..|     .+++++|+|+++++..+++++     ..+| +.+.|.|++..|+|+.+.......+...
T Consensus       132 ~~lr~~ia~~~~~~~gG~~~~~~~i~~t~G~~~ai~~~~~~l-----~~~g-d~~~d~Vlv~~p~y~~~~~~~~~~g~~~  205 (498)
T 3ihj_A          132 NCIREDVAAYITRRDGGVPADPDNIYLTTGASDGISTILKIL-----VSGG-GKSRTGVMIPIPQYPLYSAVISELDAIQ  205 (498)
T ss_dssp             HHHHHHHHHHHHHHTTTCCCCGGGEEEESSHHHHHHHHHHHH-----CCCC-GGGSEEEEEEESCCTHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhcCCCCCCcccEEEcCCHHHHHHHHHHHH-----cCCC-CCCCCEEEEeCCCchhHHHHHHHcCCEE
Confidence            3456666666665543     568999999999999999988     4444 1012699999999977655544333221


Q ss_pred             cccccCCCCCCCceeccC-------CCHHHHHHHHHhcCC--cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           95 EAIRGFGPLLPGHLKVDF-------GDITALEKIFKESGD--QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~-------~d~~~le~~l~~~~~--~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                                   ..+++       .|+++|++++++...  +++++++++++||+|.+. +.+.+++|+++|++||++|
T Consensus       206 -------------v~~~~~~~~~~~~d~~~le~~l~~~~~~~~~k~i~l~np~NPTG~v~-s~~~l~~i~~la~~~~~~l  271 (498)
T 3ihj_A          206 -------------VNYYLDEENCWALNVNELRRAVQEAKDHCDPKVLCIINPGNPTGQVQ-SRKCIEDVIHFAWEEKLFL  271 (498)
T ss_dssp             -------------EEEECBGGGTTBCCHHHHHHHHHHHTTTSEEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred             -------------EEeeccccccCCCCHHHHHHHHHhhhccCCCeEEEEECCCCCCCCcC-CHHHHHHHHHHHHHcCcEE
Confidence                         11111       189999999986422  588988888899999877 8999999999999999999


Q ss_pred             EEeccccCCccccc--CcccccC--C------CCCc---EEEecccc-c-CCccchhhhe---eCHHHHhhcCCCCCCCC
Q 017259          166 IADEIQSGLARSGR--MLASDWE--E------VRPD---MVILGKAL-G-GGVIPVSAVL---ADKEVMLCIQPGEHGST  227 (374)
Q Consensus       166 i~Dea~~~~~~~g~--~~~~~~~--~------~~~d---~~s~sK~~-~-~G~~~~G~~~---~~~~~~~~~~~~~~~~~  227 (374)
                      |+||+|.++.+.+.  ...+...  +      -...   +.||||.+ | .|+ |+||++   .++++.+.+.... ...
T Consensus       272 i~De~y~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~i~~~S~SK~~~G~~G~-R~G~~~~~~~~~~l~~~l~~~~-~~~  349 (498)
T 3ihj_A          272 LADEVYQDNVYSPDCRFHSFKKVLYEMGPEYSSNVELASFHSTSKGYMGECGY-RGGYMEVINLHPEIKGQLVKLL-SVR  349 (498)
T ss_dssp             EEECTTTTCBCCTTCCCCCHHHHHHHTCHHHHTTCCEEEEEESSSSTTCCSSS-CCEEEEEESCCHHHHHHHHHHH-HHS
T ss_pred             EEEcCccccccCCCCCcCCHHHHHHHhcccccCceeEEEEeccccccccCccc-ceEEEEEecCCHHHHHHHHHHH-hcc
Confidence            99999997654432  2111110  0      0112   33899999 4 699 999987   5788887776432 234


Q ss_pred             CCCCHHHHHHHHHHHH-----------HHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCC
Q 017259          228 FGGNPLASAVAIASLD-----------VIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTA  294 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~-----------~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~  294 (374)
                      .+.+.+++.++.++++           ++.. ..+.++++++++.+.+.|++    +|+ +....+. +.+.|+.++...
T Consensus       350 ~~~~~~~q~a~~~~l~~~~~g~~~~~~~~~~~~~~~~~l~~~~~~l~~~L~~----~~g-~~~~~p~gg~~~~~~l~~p~  424 (498)
T 3ihj_A          350 LCPPVSGQAAMDIVVNPPVAGEESFEQFSREKESVLGNLAKKAKLTEDLFNQ----VPG-IHCNPLQGAMYAFPRIFIPA  424 (498)
T ss_dssp             CCCCHHHHHHHHHHTCCCCTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHT----STT-EECCCCCBSSEECCEECCCH
T ss_pred             CCCCHHHHHHHHHHhcCCccCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhc----CCC-cEecCCCeEEEEEEeccCch
Confidence            5667788877666553           1111 23345555556666555544    333 2223334 444554443110


Q ss_pred             --------CchhHHHH-HHH-HHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          295 --------LPVSAYDI-CLK-MKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       295 --------~~~~~~~~-~~~-l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                              .+.+.+++ +.. |.++||.+.++       +.+++|+++  ..+++++++++++|+++++ ++
T Consensus       425 ~~~~~~~~~g~~~~~~~~~~ll~~~gI~v~pG~~f~~~~~~~~~Ris~--~~~~e~l~~~i~~L~~~~~-~~  493 (498)
T 3ihj_A          425 KAVEAAQAHQMAPDMFYCMKLLEETGICVVPGSGFGQREGTYHFRMTI--LPPVEKLKTVLQKVKDFHI-NF  493 (498)
T ss_dssp             HHHHHHHHTTSCHHHHHHHHHHHHHCBCCEEGGGTCCCTTCCBEEEEC--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred             hhhHHHHhcCCCcHHHHHHHHHHHCCEEEEeCcccCCCCCCCEEEEEe--CCCHHHHHHHHHHHHHHHH-HH
Confidence                    01123443 444 55679999874       245899996  4789999999999999987 54

>1gc0_A Methionine gamma-lyase; pyridoxal-5'-phosphate; HET: LLP; 1.70A {Pseudomonas putida} SCOP: c.67.1.3 PDB: 1gc2_A* 1pg8_A* 1ukj_A* 2o7c_A*

Probab=99.93  E-value=5.3e-25  Score=207.16  Aligned_cols=294  Identities=15%  Similarity=0.123  Sum_probs=201.0

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...++++++++++|.++.++++||++|++.+++.+     ..+|     ++|++..++|++.......+..
T Consensus        57 ~~~~r~~~~~~~~l~~~la~~~g~~~~i~~~sG~~a~~~~l~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~  126 (398)
T 1gc0_A           57 HFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPG-----DEVLLGNTLYGCTFAFLHHGIG  126 (398)
T ss_dssp             ------CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCSHHHHHHHHTGG
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hcCC-----CEEEEeCCCchhHHHHHHHHHH
Confidence            33445678889999999999998889999999999999999988     4567     9999999999876544322111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ..+         ..+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       127 ~~g---------~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~li~D~~~~  190 (398)
T 1gc0_A          127 EFG---------VKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTYC  190 (398)
T ss_dssp             GGT---------CEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTTT
T ss_pred             HcC---------CEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCccccc----HHHHHHHHHHcCCEEEEECCCc
Confidence            101         2344555568999999887   57999999999999999998    9999999999999999999998


Q ss_pred             CCcccccCcccccCCCCCcEEEecccccC-Cccch-hhheeCHHHHh-hcCCCCCC-CCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMVILGKALGG-GVIPV-SAVLADKEVML-CIQPGEHG-STFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~-G~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      .+. .+...   ..+.+..+.|++|.+++ |. |+ |+++++++.++ .+...... .+...+++.++++.++++.+  .
T Consensus       191 ~~~-~~~~~---~~~~d~~~~S~sK~~~~~~~-~~~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~  263 (398)
T 1gc0_A          191 TPY-LQRPL---ELGADLVVHSATKYLSGHGD-ITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTL--N  263 (398)
T ss_dssp             HHH-HCCGG---GGTCSEEEEETTTTTTCSSS-CCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTH--H
T ss_pred             ccc-cCCch---hhCceEEEECCccccCCCCC-CeEEEEEEChHHHHHHHHHHhhccCCCCCCHHHHHHHHhccchH--H
Confidence            432 12221   12333334588899995 66 77 88888877655 45433233 34567888888877777644  2


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHh----CC------Ccee---eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQ----FP------NYVK---EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~----~~------~~~~---~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ...++..++.+++.+.|++....    +|      ++..   ...+.+.++.|.++.     ...+..+.+.+.|+.+..
T Consensus       264 ~~~~~~~~~~~~l~~~L~~~~~v~~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~-----~~~~~~~~l~~~~i~~~~  338 (398)
T 1gc0_A          264 LRMDRHCANAQVLAEFLARQPQVELIHYPGLASFPQYTLARQQMSQPGGMIAFELKG-----GIGAGRRFMNALQLFSRA  338 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEEEC----------------CCTTEEEEEETT-----HHHHHHHHHHHCSSSEEC
T ss_pred             HHHHHHHHHHHHHHHHHhcCCCeeEEECCCCCCCcCHHHHHhhCCCCceEEEEEECC-----CHHHHHHHHHhCCCceec
Confidence            33556666666666666552100    00      0000   012357788887753     334566667777766533


Q ss_pred             ---C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          316 ---T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       316 ---~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                         +                           ..+.+|++++...++++++.+.++|+++
T Consensus       339 ~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRis~g~~~~~~~i~~l~~al~~~  397 (398)
T 1gc0_A          339 VSLGDAESLAQHPASMTHSSYTPEERAHYGISEGLVRLSVGLEDIDDLLADVQQALKAS  397 (398)
T ss_dssp             SCCSCSSCEEECGGGTTTSSSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHHH
T ss_pred             cCCCCcceeeecccccccccCCHHHHHhcCCCCCeEEEEeCcCCHHHHHHHHHHHHHhc
Confidence               1                           1479999999988999999998888764

>4eb5_A Probable cysteine desulfurase 2; scaffold, transferase-metal binding protein complex; HET: PLP EPE; 2.53A {Archaeoglobus fulgidus} PDB: 4eb7_A*

Probab=99.93  E-value=4.2e-25  Score=206.28  Aligned_cols=294  Identities=15%  Similarity=0.090  Sum_probs=197.2

Q ss_pred             CcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           21 DKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +...++++++++++|.+  ++++++||++|++.+++++.... .++|     |+|++.+++|++.......+... +...
T Consensus        43 ~~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~l~~~~-~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~-g~~~  115 (382)
T 4eb5_A           43 EAVQEAREKVAKLVNGGGGTVVFTSGATEANNLAIIGYAMRN-ARKG-----KHILVSAVEHMSVINPAKFLQKQ-GFEV  115 (382)
T ss_dssp             HHHHHHHHHHHHHHTCTTEEEEEESSHHHHHHHHHHHHHHHH-GGGC-----CEEEEETTCCHHHHHHHHHHTTT-TCEE
T ss_pred             HHHHHHHHHHHHHhCCCCCeEEEcCchHHHHHHHHHHHHhhc-cCCC-----CEEEECCCcchHHHHHHHHHHhC-CcEE
Confidence            46778999999988765  89999999999999999885211 2567     99999999987764443322110 1110


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                      .+.+...+.    ..|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||++ |+||+|+ ++.. 
T Consensus       116 ~~v~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~l~~~~~~~-i~D~a~~-~g~~-  181 (382)
T 4eb5_A          116 EYIPVGKYG----EVDVSFIDQKLR---DDTILVSVQHANNEIGTIQP----VEEISEVLAGKAAL-HIDATAS-VGQI-  181 (382)
T ss_dssp             EEECBCTTS----CBCHHHHHHHCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSEE-EEECTTT-BTTB-
T ss_pred             EEeccCCCC----ccCHHHHHHHhc---CCCeEEEEeccCCCccccCC----HHHHHHHHHHCCCE-EEEcchh-cCCc-
Confidence            011110110    027899998886   47899999999999999998    99999999999999 9999997 3211 


Q ss_pred             cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC-------CCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH-------GSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                       .+....  ..+|++  |+||.++. . ++|+++++++.  .+.+...       ...++.+...+.++.++++.+.+  
T Consensus       182 -~~~~~~--~~~di~~~s~sK~~g~-~-g~G~~~~~~~~--~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~~~~~  254 (382)
T 4eb5_A          182 -EVDVEK--IGADMLTISSNDIYGP-K-GVGALWIRKEA--KLQPVILGGGQENGLRSGSENVPSIVGFGKAAEITAMEW  254 (382)
T ss_dssp             -CCCHHH--HTCSEEEEETGGGTCC-S-SCEEEEEETTC--CCCCSSCSSCTGGGTSCSCCCHHHHHHHHHHHHHHHHHH
T ss_pred             -ccCccc--cCCCEEEeehHHhcCC-C-ceEEEEEcccc--ccCceecCCCccccccCCCccHHHHHHHHHHHHHHHHhH
Confidence             111111  234655  67797542 2 46788777653  2222111       12335566777777777876544  


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-------
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-------  317 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-------  317 (374)
                      +++.++++++.+++.+.|++    +|++....+   ..+.++++.++..    +..++.+.|.++||.++++.       
T Consensus       255 ~~~~~~~~~~~~~l~~~L~~----~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~~~gi~v~~g~~~~~~~~  326 (382)
T 4eb5_A          255 REEAERLRRLRDRIIDNVLK----IEESYLNGHPEKRLPNNVNVRFSYI----EGESIVLSLDMAGIQASTGSACSSKTL  326 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT----STTEEECSCSSSBCTTEEEEEETTS----CHHHHHHHHHHHTCBCBCCCGGGTSSC
T ss_pred             HHHHHHHHHHHHHHHHHHhh----CCCeEEeCCcccCCCCEEEEEeCCc----CHHHHHHHHHHCCEEEeccccccCCCC
Confidence            23445555555666555544    322211111   1255777777632    57889999999999998753       


Q ss_pred             ----------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          318 ----------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       318 ----------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                                      .+++|++++...+++++++++++|+++++ ++..
T Consensus       327 ~~~~~~~~~g~~~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~-~~~~  375 (382)
T 4eb5_A          327 QPSHVLMACGLKHEEAHGTLLLTLGRYNTDEDVDRLLEVLPGVIE-RLRS  375 (382)
T ss_dssp             CCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred             cccHHHHHcCCChhccCCeEEEECCCCCCHHHHHHHHHHHHHHHH-HHHH
Confidence                            47999998888899999999999999998 6643

>3ndn_A O-succinylhomoserine sulfhydrylase; seattle structural genomics center for infectious disease, S mycobacterium, PLP, schiff base; HET: LLP; 1.85A {Mycobacterium tuberculosis}

Probab=99.93  E-value=3.1e-26  Score=216.11  Aligned_cols=293  Identities=17%  Similarity=0.146  Sum_probs=196.8

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.++.+.++..++|+++|++++|.+++++++||++|++.+++.+     .++|     |+|++.+++|++.........
T Consensus        72 ~~~y~r~~~p~~~~l~~~la~~~g~~~~~~~~sG~~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~  141 (414)
T 3ndn_A           72 HYVYSRYGNPTVSVFEERLRLIEGAPAAFATASGMAAVFTSLGAL-----LGAG-----DRLVAARSLFGSCFVVCSEIL  141 (414)
T ss_dssp             CCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEESCCCHHHHHHHHTHH
T ss_pred             CcCcCCCCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCccchHHHHHHHHH
Confidence            344566778899999999999999999999999999999999877     5677     999999999988544332210


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .         .....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|
T Consensus       142 ~---------~~g~~~~~v~~~d~~~l~~ai~---~~t~~v~le~p~NptG~~~~----l~~i~~la~~~g~~livDe~~  205 (414)
T 3ndn_A          142 P---------RWGVQTVFVDGDDLSQWERALS---VPTQAVFFETPSNPMQSLVD----IAAVTELAHAAGAKVVLDNVF  205 (414)
T ss_dssp             H---------HTTCEEEEECTTCHHHHHHHTS---SCCSEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             H---------HcCcEEEEeCCCCHHHHHHhcC---CCCeEEEEECCCCCCCcccc----HHHHHHHHHHcCCEEEEECCC
Confidence            0         0113456667779999999987   57899999999999999988    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEecccccC-C-ccchhhheeCHHHHh-hcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALGG-G-VIPVSAVLADKEVML-CIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G-~~~~G~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +.. ....+   ..++.+..+.|+||.+++ | + ++|+++++++.+. .++..........+++.++++...++.+.  
T Consensus       206 ~~~-~~~~~---~~~g~div~~S~sK~l~~~G~~-~~G~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~--  278 (414)
T 3ndn_A          206 ATP-LLQQG---FPLGVDVVVYSGTKHIDGQGRV-LGGAILGDREYIDGPVQKLMRHTGPAMSAFNAWVLLKGLETLA--  278 (414)
T ss_dssp             THH-HHCCC---GGGTCSEEEEETTTTTTCSSCC-CCEEEEECHHHHTTHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--
T ss_pred             ccc-ccCCc---hhcCCCeEeccCCccccCCCCc-eEEEEEECHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHH--
Confidence            721 11111   123343445588899986 6 5 8899999887655 44421111122335665555555444332  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------------EEEEeeeEEEEeccCCC--chhHHHHHHHHHHC
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKE-----------------VRGRGLFNAVEFDKTAL--PVSAYDICLKMKER  309 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~  309 (374)
                      ...++..++.+++.+.|++.    |.+...                 .++.|.+++|.++....  ......|.+.|...
T Consensus       279 ~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~G~~l~~~l~~~~~~~~~~~~~~~~~l~~~  354 (414)
T 3ndn_A          279 IRVQHSNASAQRIAEFLNGH----PSVRWVRYPYLPSHPQYDLAKRQMSGGGTVVTFALDCPEDVAKQRAFEVLDKMRLI  354 (414)
T ss_dssp             HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEECSCGGGHHHHHHHHHHHCSSS
T ss_pred             HHHHHHHHHHHHHHHHHhcC----CCEeEEECCCCCCCcCHHHHHHhCCCCceEEEEEEcCCccccHHHHHHHHHhCccc
Confidence            23455555666666655543    221111                 12357899999964200  11466677777666


Q ss_pred             CeEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          310 GILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       310 Gi~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++.++.+                           .++.+|++++.    |+.+.+++.|++++
T Consensus       355 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvG~----e~~~dli~dl~~al  413 (414)
T 3ndn_A          355 DISNNLGDAKSLVTHPATTTHRAMGPEGRAAIGLGDGVVRISVGL----EDTDDLIADIDRAL  413 (414)
T ss_dssp             EECSCCSCSSCEEECGGGTTTCTTHHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHH
T ss_pred             eEcCCCCCCCceeeCccccccccCCHHHHHhcCCCCCeEEEEeCc----CCHHHHHHHHHHhh
Confidence            6544322                           25789999553    55566667776665

>1svv_A Threonine aldolase; structural genomics, structural genomics of pathogenic proto SGPP, protein structure initiative, PSI; 2.10A {Leishmania major} SCOP: c.67.1.1

Probab=99.93  E-value=2e-25  Score=206.66  Aligned_cols=291  Identities=11%  Similarity=0.023  Sum_probs=190.4

Q ss_pred             cCCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--ccccc
Q 017259           16 RAFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMS   91 (374)
Q Consensus        16 ~~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~   91 (374)
                      +.+..+.++++++++++++|.  +++++++||++|++.+++.+     .++|     |+|++.+++|++....  ....+
T Consensus        44 ~~g~~~~~~~~~~~l~~~~g~~~~~v~~~~g~t~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g  113 (359)
T 1svv_A           44 GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA-----LRPW-----EAVIATQLGHISTHETGAIEATG  113 (359)
T ss_dssp             STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH-----CCTT-----EEEEEETTSHHHHSSTTHHHHTT
T ss_pred             cccccHHHHHHHHHHHHHhCCCCccEEEeCCchHHHHHHHHHH-----hCCC-----CEEEEcccchHHHHHHHHHhcCC
Confidence            445677888999999998764  47999999999999999988     4567     9999999999876553  21111


Q ss_pred             CCccccccCCCCCCCceeccCC----CHHHHHHHHHhc----CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKES----GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI  163 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~~----~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i  163 (374)
                                   ..+..++.+    |+++|++++++.    +.++++++++++ +++|.+. +.+++++|.++|++||+
T Consensus       114 -------------~~~~~v~~~~~~~d~~~l~~~l~~~~~~~~~~~~~v~~~~~-~ptG~~~-~~~~l~~i~~~~~~~~~  178 (359)
T 1svv_A          114 -------------HKVVTAPCPDGKLRVADIESALHENRSEHMVIPKLVYISNT-TEVGTQY-TKQELEDISASCKEHGL  178 (359)
T ss_dssp             -------------CCEEEECCTTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESS-CTTSCCC-CHHHHHHHHHHHHHHTC
T ss_pred             -------------CeeEEEeCCCCeecHHHHHHHHHHHHhccCCCceEEEEEcC-CCCceec-CHHHHHHHHHHHHHhCC
Confidence                         112222222    699999999853    224899999887 6788777 68999999999999999


Q ss_pred             EEEEeccccCC--cccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHH
Q 017259          164 LMIADEIQSGL--ARSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAV  237 (374)
Q Consensus       164 ~li~Dea~~~~--~~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~a  237 (374)
                      ++|+||+|.+|  +..+...........+|+.+  .+|. ++.. +.|+++.++++.+.+....  .+.++..+.....+
T Consensus       179 ~li~De~~~~~~~~~~~~~~~~~~~~~~~d~~~~s~~K~-g~~~-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  256 (359)
T 1svv_A          179 YLFLDGARLASALSSPVNDLTLADIARLTDMFYIGATKA-GGMF-GEALIILNDALKPNARHLIKQRGALMAKGWLLGIQ  256 (359)
T ss_dssp             EEEEECTTHHHHHTSTTCCCCHHHHHHHCSEEEEECTTT-TCSS-CEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHH
T ss_pred             EEEEEccchhhhhcCCCcchhhhhhhhcCCEEEEecccC-CCCC-ceEEEEEcccHHHHHHHHHhcCCcccccchhhHHH
Confidence            99999999544  22221101000012346654  4574 3334 6678888888776665321  22333323333333


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC-CeEecc-
Q 017259          238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER-GILAKP-  315 (374)
Q Consensus       238 a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~-Gi~v~~-  315 (374)
                      ..++++...-+++.++++++++++.+.| +..    ++....+..+.++++.++        .++.+.|.++ ||.+.+ 
T Consensus       257 ~~~~l~~~~~~~~~~~~~~~~~~l~~~L-~~~----~~~~~~~~~~~~~~~~~~--------~~~~~~l~~~~gi~v~~~  323 (359)
T 1svv_A          257 FEVLMKDNLFFELGAHSNKMAAILKAGL-EAC----GIRLAWPSASNQLFPILE--------NTMIAELNNDFDMYTVEP  323 (359)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHH-HHT----TCCBSSCCSSSEECBEEE--------HHHHHHHTTTEECEEEEE
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHh-ccC----CeEEccCCccceEEEEcC--------HHHHHHHHHhcCEEEEec
Confidence            2222221111245667777777777777 331    221111223455555443        4788999999 998854 


Q ss_pred             --CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 --THDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 --~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        ...+++|++++...+++++++++++|+++++
T Consensus       324 ~~~~~~~iRi~~~~~~~~~~i~~~~~~l~~~~~  356 (359)
T 1svv_A          324 LKDGTCIMRLCTSWATEEKECHRFVEVLKRLVA  356 (359)
T ss_dssp             ETTTEEEEEEECCTTCCHHHHHHHHHHHHHC--
T ss_pred             ccCCCceEEEEccCcCCHHHHHHHHHHHHHHHh
Confidence              2457999999888999999999999998876

>3ke3_A Putative serine-pyruvate aminotransferase; structural genomi center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP; 2.20A {Psychrobacter arcticus 273-4}

Probab=99.93  E-value=1.5e-25  Score=209.48  Aligned_cols=301  Identities=12%  Similarity=0.043  Sum_probs=203.7

Q ss_pred             CcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cCCc-c-c
Q 017259           21 DKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDN-E-A   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~-~-~   96 (374)
                      +.+++++++++++++.+ .+++++||++|++.++..+      .+|     |+|++.+++||+........ .+.. . .
T Consensus        35 ~~~~~~~~~l~~~~~~~~~v~~~~sgt~a~~~~~~~~------~~g-----d~vi~~~~~~~~~~~~~~~~~~g~~~~~~  103 (379)
T 3ke3_A           35 EVMNDLLSNLKTVYNAEAAVIIPGSGTYGMEAVARQL------TID-----EDCLIIRNGWFSYRWTQILEKGKFAKSST  103 (379)
T ss_dssp             HHHHHHHHHHHHHHTCSEEEEEESCHHHHHHHHHHHH------CTT-----CEEEEEECSHHHHHHHHHHHHHCCSSEEE
T ss_pred             HHHHHHHHHHHHHhCCCCEEEEcCChhHHHHHHHHhC------CCC-----CeEEEEeCCchhHHHHHHHHHhCCCCceE
Confidence            45677888888888765 5788999999999987544      356     99999999998864322211 1100 0 0


Q ss_pred             cccCCCCC-CCc-eeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           97 IRGFGPLL-PGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        97 ~~~~~~~~-~~~-~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ........ .+. ......|++++++++++.  +++++++..+.+++|.+. +.+++++|.++|++||+++|+|++++  
T Consensus       104 ~~~~~~~g~~~~~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~~~G~~~-~~~~l~~i~~~~~~~~~~li~D~~~~--  178 (379)
T 3ke3_A          104 VLTAERTEDTEAPKPFAPVDIETAVAKIKED--KSAIVYAPHVETSSGIIL-SEEYIKALSEAVHSVGGLLVIDCIAS--  178 (379)
T ss_dssp             EEECEESSCCSSCCCEECCCHHHHHHHHHHH--TCSEEEEESEETTTTEEC-CHHHHHHHHHHHHHTTCEEEEECTTC--
T ss_pred             EEeccccccccccCCCCCCCHHHHHHHHhhc--CCcEEEEEeecCCCceeC-CHHHHHHHHHHHHHcCCEEEEEeccc--
Confidence            00000000 000 000124899999999643  577888888888888777 68899999999999999999999987  


Q ss_pred             cccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCC----------------------CCCCCCCCH
Q 017259          175 ARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE----------------------HGSTFGGNP  232 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~----------------------~~~~~~~~~  232 (374)
                      +  +..+....++.+..+.+++|+++++. ++|+++.++++.+.+.+..                      ...+++.+.
T Consensus       179 g--~~~~~~~~~~~d~~~~s~~K~l~~~~-g~g~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~t~~~  255 (379)
T 3ke3_A          179 G--CVWLDMKELGIDVLISAPQKGWSSTP-CAGLVMLSAAAIKKVESTESNCFSLDLKQWLTIMRAYENGGHAYHATMPT  255 (379)
T ss_dssp             T--TCCCCHHHHTCSEEEECTTTTTCSCC-CEEEEEECHHHHHHHHTCCCSCSTTCHHHHHHHHHHHHTTSCCCSSCCCH
T ss_pred             C--CccccccccCCCEEEecchhhcCCCC-ceEEEEECHHHHHhhhcCCCCceeecHHHHHHHHHhhhccCCCCCCCCCH
Confidence            2  23333333444333445569998877 7899999998877665311                      012236788


Q ss_pred             HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          233 LASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       233 ~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      ..++++.++++.+.++   ++.++.+++.+++++.|+++...   .... ....+.+..+..+ .    ....+.+.|.+
T Consensus       256 ~~~~a~~aal~~~~~~g~~~~~~~~~~l~~~l~~~l~~~g~~---~~~~~~~~~~~i~~~~~~-~----~~~~~~~~L~~  327 (379)
T 3ke3_A          256 DSLRQFRDAILEAKEIGFDILRDAQWELGNRVRKVLTDKGIE---SVAAEGFEAPGVVVSYTE-R----DDMHKGSAFAE  327 (379)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCC---BSBCTTCBCSSEEEEECS-C----HHHHSSHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHcCCE---ecCCccccCceEEEEccC-C----cchHHHHHHHH
Confidence            8888888999887654   56677778888888888776321   1111 1112333333332 2    22234778889


Q ss_pred             CCeEeccCC---------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          309 RGILAKPTH---------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       309 ~Gi~v~~~~---------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +||.+.++.         .+.+||+++..+|++|+++++++|+++++ ++
T Consensus       328 ~Gi~v~~g~~~~~~~~~~~~~lRis~~~~~t~~di~~~~~~l~~~l~-~~  376 (379)
T 3ke3_A          328 AGLQIAAGVPLKVGEPDNFKTFRLGLFGLDKLTDIDGTVERFEKALD-EV  376 (379)
T ss_dssp             TTCCCEECCCCSSCCCTTCCEEEEECCSHHHHTCHHHHHHHHHHHHH-HH
T ss_pred             CCeEEeCCccccccccCcCCEEEEeCCcCCCHHHHHHHHHHHHHHHH-Hh
Confidence            999988763         58999999988999999999999999987 54

>1mdo_A ARNB aminotransferase; type 1 aminotransferase fold; HET: MSE PMP; 1.70A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1mdx_A* 1mdz_A*

Probab=99.93  E-value=6.3e-25  Score=206.08  Aligned_cols=301  Identities=15%  Similarity=0.156  Sum_probs=202.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+++.+..+    .+.+...++++.++++++.+++++++||++|++.+++++.    ..+|     |+|++..++|+
T Consensus        24 ~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~~~~~~gt~al~~~~~~~~----~~~g-----d~Vl~~~~~~~   90 (393)
T 1mdo_A           24 AAVKTVLDSGWI----TTGPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG----IGEG-----DEVITPSMTWV   90 (393)
T ss_dssp             HHHHHHHHHTCC----SSSHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCH
T ss_pred             HHHHHHHhcCCc----CCChHHHHHHHHHHHHhCCCcEEEecChHHHHHHHHHHcC----CCCC-----CEEEeCCCccH
Confidence            455666655432    3467788999999999999999999999999999998873    3456     99999999998


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      +....+...+......    +...+.   -..|+++++++++   ++++++++++   ++|...+    +++|.++|++|
T Consensus        91 ~~~~~~~~~g~~~~~v----~~~~~~---~~~d~~~l~~~l~---~~~~~v~~~~---~~G~~~~----~~~i~~l~~~~  153 (393)
T 1mdo_A           91 STLNMIVLLGANPVMV----DVDRDT---LMVTPEHIEAAIT---PQTKAIIPVH---YAGAPAD----LDAIYALGERY  153 (393)
T ss_dssp             HHHHHHHHTTCEEEEE----CBCTTT---CCBCHHHHHHHCC---TTEEEECCBC---GGGCCCC----HHHHHHHHHHH
T ss_pred             hHHHHHHHCCCEEEEE----eccCCc---CCCCHHHHHHhcC---CCceEEEEeC---CCCCcCC----HHHHHHHHHHc
Confidence            8654443322211111    110000   0127899998887   4688888765   4677776    99999999999


Q ss_pred             CCEEEEecccc-CCcccccCcccccCCCCCcEE--Eec--ccccCCccchhhheeC-HHHHhhcCCCCC-----------
Q 017259          162 NILMIADEIQS-GLARSGRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH-----------  224 (374)
Q Consensus       162 ~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~--s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~-----------  224 (374)
                      |+++|+||+|+ +..+.+..     .+. .|++  |++  |++++|  ++|+++.+ +++.+.+.....           
T Consensus       154 ~~~li~D~a~~~g~~~~~~~-----~~~-~d~~~~S~~k~K~l~~~--~~g~~~~~~~~~~~~l~~~~~~~~~~~~~~~~  225 (393)
T 1mdo_A          154 GIPVIEDAAHATGTSYKGRH-----IGA-RGTAIFSFHAIKNITCA--EGGIVVTDNPQFADKLRSLKFHGLGVDAWDRQ  225 (393)
T ss_dssp             TCCBCEECTTCTTCEETTEE-----TTS-SSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTEECC-----
T ss_pred             CCeEEEECccccCCeECCee-----cCC-CCeEEEeCCCCCccccc--cceEEEeCCHHHHHHHHHHHhcCCcccchhhh
Confidence            99999999998 34333322     122 6766  455  888764  68888886 677665532111           


Q ss_pred             -------------CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEEEEeeeEEEE
Q 017259          225 -------------GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRGLFNAVE  289 (374)
Q Consensus       225 -------------~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g~~~~~~  289 (374)
                                   +.++..+.+.++++...++.+  +++.++.+++.+++.+.|+++...++ ...  ..+..+.++++.
T Consensus       226 ~~~~~~~~~~~~~g~~~~~~~~~~a~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~v~  302 (393)
T 1mdo_A          226 SGGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPL-SLPSWEHIHAWHLFIIR  302 (393)
T ss_dssp             ------CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEEC-CCCSSCEECCCSCEEEE
T ss_pred             cccccccccccccCccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhcCCcccc-cCCCCCCCceeEEEEEE
Confidence                         111334666666666655543  24556666666667666655321100 000  123345578887


Q ss_pred             ecc---CCCchhHHHHHHHHHHCCeEeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHH
Q 017259          290 FDK---TALPVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKAL  341 (374)
Q Consensus       290 ~~~---~~~~~~~~~~~~~l~~~Gi~v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l  341 (374)
                      ++.   ..   +..++.+.|.++||.++++.                         ...+|++++..++++|+++++++|
T Consensus       303 ~~~~~~~~---~~~~l~~~l~~~gi~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l  379 (393)
T 1mdo_A          303 VDEARCGI---TRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITAL  379 (393)
T ss_dssp             CCHHHHSS---CHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHH
T ss_pred             eccccccc---CHHHHHHHHHhCCCCcccccCccccChhhhccCCccCChhHHHHHhCEEEecCCCCCCHHHHHHHHHHH
Confidence            763   22   57889999999999998743                         237999988889999999999999


Q ss_pred             HHHHh
Q 017259          342 HDVLE  346 (374)
Q Consensus       342 ~~~~~  346 (374)
                      +++++
T Consensus       380 ~~~~~  384 (393)
T 1mdo_A          380 HQIAG  384 (393)
T ss_dssp             HHHHC
T ss_pred             HHHHh
Confidence            99887

>3meb_A Aspartate aminotransferase; pyridoxal PHOS transferase, structural genomics, seattle structural genomi for infectious disease, ssgcid; HET: PLP; 1.90A {Giardia lamblia}

Probab=99.93  E-value=3e-25  Score=212.00  Aligned_cols=300  Identities=11%  Similarity=0.098  Sum_probs=193.6

Q ss_pred             CCcHHHHHHHHhccc-CC-------CeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-
Q 017259           20 NDKFPVFAERLTSMF-GY-------DMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-   88 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-~~-------~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-   88 (374)
                      .....++++.+++++ |.       +++++  |+||++|++.+..++..   ..+|     |+|++.+|+|+++..... 
T Consensus        93 ~~G~~~lr~~ia~~l~g~~~~~~~~~~i~~~~t~ggt~al~l~~~~~~~---~~~g-----d~Vlv~~p~~~~~~~~~~~  164 (448)
T 3meb_A           93 VAGFPLFLEAAQFLMFGKDSKAAQEGRIASCQSLSGTGSLHIGFEFLHL---WMPK-----AEFYMPSTTWPNHYGIYDK  164 (448)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEESHHHHHHHHHHHHHHH---HCTT-----CCEEEESSCCTHHHHHHHH
T ss_pred             CcchHHHHHHHHHHhcCCCccccCcCcEEEEECCcHHHHHHHHHHHHHH---hCCC-----CEEEECCCCCHhHHHHHHh
Confidence            345667777777765 43       58999  99999999986543321   4567     999999999977655544 


Q ss_pred             ---cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           89 ---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        89 ---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                         ..+..........+. .+..    -|++++++++++.+++++++++++++|++|.+. +.+.+++|.++|++||+++
T Consensus       165 ~~~~~G~~v~~~~~~~~~-~~~~----~d~e~l~~~l~~~~~~~~~v~~~~p~NPtG~~~-~~~~l~~i~~l~~~~~~~l  238 (448)
T 3meb_A          165 VFNKLKVPYKEYTYLRKD-GELE----IDFSNTKKDIQSAPEKSIFLFHACAHNPSGIDF-TEAQWKELLPIMKEKKHIA  238 (448)
T ss_dssp             HHCTTTSCCEEECCBCTT-SCSS----BCHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEE
T ss_pred             hHHhCCCeEEEEeccccc-cCCC----cCHHHHHHHHHhCCCCcEEEEeCCCCCCCCcCC-CHHHHHHHHHHHHHCCCEE
Confidence               333221111100000 0001    179999999987655788888888999999877 8999999999999999999


Q ss_pred             EEeccccCCccccc---CcccccC-CCCCc---EEEeccccc-CCccchhhh--ee--------C-H----HHHhhcCCC
Q 017259          166 IADEIQSGLARSGR---MLASDWE-EVRPD---MVILGKALG-GGVIPVSAV--LA--------D-K----EVMLCIQPG  222 (374)
Q Consensus       166 i~Dea~~~~~~~g~---~~~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~--~~--------~-~----~~~~~~~~~  222 (374)
                      |+||+|.++++.+.   ......+ +..++   +.||||.++ .|+ |+||+  ++        . +    ++.+.+...
T Consensus       239 i~Deay~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-RiG~l~~v~~~~~~~~~~~~~~~~~l~~~l~~~  317 (448)
T 3meb_A          239 FFDSAYQGFATGSFEADAFAVRMFVDAGVEVLVAQSFSKNFGLYGE-RIGCLHVVHAGVEGSVEKNKALSAAMVSGMTLQ  317 (448)
T ss_dssp             EEEESCTTTSSSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CCEEEEEECCCCSSSHHHHHHHHHHHHHHHHHH
T ss_pred             EEecccccccCCCcccCchhHHHHhhcCCcEEEEecccccCCCccc-cceeeeeeeccccccccCCHHHHHHHHHHHHHH
Confidence            99999998865441   1111111 22334   448999999 699 99997  55        3 4    555555433


Q ss_pred             CCCCCCCCCHHHHHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCC-----ceeeEEE-EeeeEEE
Q 017259          223 EHGSTFGGNPLASAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPN-----YVKEVRG-RGLFNAV  288 (374)
Q Consensus       223 ~~~~~~~~~~~~~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~-----~~~~~~~-~g~~~~~  288 (374)
                      ....+.+.+.+++.++.++++...        -++..++++++++++.+.|+++.  +++     ......+ .+.+.|.
T Consensus       318 ~~~~~~~~~~~~~~a~~~~l~~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~g~~~~~  395 (448)
T 3meb_A          318 IRKTWSMSAIHGAYIVQVIVHDKRLLQMFYDNVKEMSARIHRMRSLLHASLAKRK--TPGPGSKGTWDHILTAIGMFTFT  395 (448)
T ss_dssp             HHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCCSTTTCCCTHHHHCCSSEEEC
T ss_pred             HhcccCCccHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC--CCCcCcccccceeCCCceEEEec
Confidence            234445667888887777764321        12345556666666666665541  121     0111122 3444443


Q ss_pred             EeccCCCchhHHHHHHHH-HHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          289 EFDKTALPVSAYDICLKM-KERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l-~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+       . .+++..| .++||.+.++..   ||++. ..+++++++++++|+++++ .+
T Consensus       396 ~~-------~-~~~~~~ll~~~gV~v~~G~g---Ris~a-~~~~~~i~~~~~~l~~~l~-~~  444 (448)
T 3meb_A          396 GL-------T-PEHVDYLKEKWSIYLVKAGG---RMSMC-GLTESNCDYVAEAIHDAVT-KL  444 (448)
T ss_dssp             CC-------C-HHHHHHHHHHHCEEECSGGG---EEEGG-GCCTTTHHHHHHHHHHHHH-HS
T ss_pred             CC-------C-HHHHHHHHHhCCEEEeCCCc---EEEEe-cCCHHHHHHHHHHHHHHHH-hc
Confidence            22       2 3556666 467999998642   99964 3367789999999999997 54

>3vax_A Putative uncharacterized protein DNDA; desulfurase, transferase; HET: PLP; 2.40A {Streptomyces lividans}

Probab=99.93  E-value=9.6e-26  Score=212.11  Aligned_cols=286  Identities=12%  Similarity=0.053  Sum_probs=178.5

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCcc-EEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+..++++++++++++.+  ++++++|+++|++.+++++..+. .++|     | +|++.++.|++.......+... + 
T Consensus        62 ~~~~~~l~~~la~~~~~~~~~v~~~~g~t~al~~~~~~l~~~~-~~~g-----d~~Vl~~~~~~~~~~~~~~~~~~~-g-  133 (400)
T 3vax_A           62 KRGVERAREYLASTVSAEPDELIFTSGATESNNIALLGLAPYG-ERTG-----RRHIITSAIEHKAVLEPLEHLAGR-G-  133 (400)
T ss_dssp             HHHHHHHHHHHHHHTTCCGGGEEEESCHHHHHHHHHHTTHHHH-HHHT-----CCEEEEETTSCHHHHHHHHHHHTT-T-
T ss_pred             HHHHHHHHHHHHHHcCCCCCcEEEeCCHHHHHHHHHHHHHHhh-ccCC-----CCEEEECccccHhHHHHHHHHHhc-C-
Confidence            455788999999988765  89999999999999999884211 2566     8 9999999887654443333111 1 


Q ss_pred             cccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                              ..+..++.+     |+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||++||+||+|
T Consensus       134 --------~~~~~v~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~~~~li~D~a~  198 (400)
T 3vax_A          134 --------FEVDFLTPGPSGRISVEGVMERLR---PDTLLVSLMHVNNETGVIQP----VAELAQQLRATPTYLHVDAAQ  198 (400)
T ss_dssp             --------CEEEEECCCTTCCCCHHHHHTTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHTTSSCEEEEECTT
T ss_pred             --------CeEEEEccCCCCCcCHHHHHHhcC---CCceEEEEECCCCCceeeCc----HHHHHHHHHhcCCEEEEEhhh
Confidence                    112222222     7899988886   57999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccCCccchhhhe-eCH-HHH---hhcCCCCC-------CCCCCCCHHHHHH
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVL-ADK-EVM---LCIQPGEH-------GSTFGGNPLASAV  237 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~-~~~-~~~---~~~~~~~~-------~~~~~~~~~~~~a  237 (374)
                      +.. ..    ....... +|++  |++|. .|+. ++|+++ .++ .+.   ..+.+...       ....+.+..++++
T Consensus       199 ~~~-~~----~~~~~~~-~d~~~~s~~K~-~g~~-g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  270 (400)
T 3vax_A          199 GYG-KV----PGDLTTP-IDMISISGHKI-GAPK-GVGALVTRRREEMDDERVPLEPIMFGGGQERKLRPGTLPVPLIMG  270 (400)
T ss_dssp             TTT-TS----GGGGGSC-CSEEEEETGGG-TSCS-SCEEEEECBCSSSTTCBCCCCCSSCSSCTGGGTSCSCCCHHHHHH
T ss_pred             hcC-CC----CcChhhc-CcEEEEeHHHh-CCCC-ceEEEEEecchhccccccccCceecCCCceeeeecCCCCHHHHHH
Confidence            721 11    1112223 6766  55694 4444 567776 655 111   12222211       1234557777777


Q ss_pred             HHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE---EEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          238 AIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR---GRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       238 a~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~---~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      +.++++.+.+  +++.++++++.+++.+.|+ .    +++.....   ..+.++++.++..    +..++.+.|. +||.
T Consensus       271 ~~~al~~~~~~~~~~~~~~~~~~~~l~~~L~-~----~~~~~~~~~~~~~~~~~~~~~~~~----~~~~l~~~L~-~gi~  340 (400)
T 3vax_A          271 LAEAAKIFEAEHAQWQVAAQDLRSRLLAGLA-S----TSFQVNGDQDHVVPHILNLSFEDV----DAEAFLVTLK-DLVA  340 (400)
T ss_dssp             HHHHHHHHHHSHHHHHHHHHHHHHHHHHHHT-T----TTCEECSCTTSBCTTEEEEECTTC----CHHHHHHHHH-HHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhC-C----CCEEEeCCcccCCCCEEEEEeCCC----CHHHHHHHHh-cCcE
Confidence            7788876644  3556666666777766665 2    22221111   1235667666643    6789999999 9998


Q ss_pred             eccCC-----------------------CCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPTH-----------------------DTIVRLTP-PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~~-----------------------~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++++.                       .+++||++ +...+++++++++++|+++++
T Consensus       341 v~~g~~~~~~~~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~  398 (400)
T 3vax_A          341 VATGSASTSASFTPSHVLRAMGLPEEAASKSLRFSWTPGQATDLDVEELARGVAKLKP  398 (400)
T ss_dssp             HTTTTEEEEEEECCHHHHHTTTCCHHHHTSEEEEEEEEC-------------------
T ss_pred             EEecccccCCCCCccHHHHHcCCCccccCceEEEEccCCCCCHHHHHHHHHHHHHHhc
Confidence            87742                       48999998 888899999999999998876

>1v72_A Aldolase; PLP-dependent enzyme, lyase; HET: PLP; 2.05A {Pseudomonas putida} SCOP: c.67.1.1

Probab=99.93  E-value=2.9e-25  Score=205.35  Aligned_cols=288  Identities=13%  Similarity=0.065  Sum_probs=183.0

Q ss_pred             CCCcHHHHHHHHhcccCCCe-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--ccccc-CCc
Q 017259           19 YNDKFPVFAERLTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMS-CDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~-~~~   94 (374)
                      ..+...++++++++++|.+. +++++||++|++.+++++     .++|     |+|++.+++|.+....  ..... +..
T Consensus        41 ~~~~~~~l~~~la~~~g~~~~v~~~~~gt~a~~~al~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~~~g~~  110 (356)
T 1v72_A           41 TDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAM-----TPPW-----GNIYCHPASHINNDECGAPEFFSNGAK  110 (356)
T ss_dssp             CSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTS-----CCTT-----EEEEECTTSHHHHSSTTHHHHHTTSCE
T ss_pred             cchHHHHHHHHHHHHhCCCCcEEEeCCccHHHHHHHHHh-----cCCC-----CEEEEcCccchhhhhchHHHHHhCCcE
Confidence            45677889999999887664 899999999999999877     4567     9999998875433222  22221 211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHH-HHHh----cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEK-IFKE----SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~-~l~~----~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ..   ..+.  +  .. .-|++++++ ++++    ++++++++++++++ ++|.+. +.+.+++|.++|++||++||+|+
T Consensus       111 ~~---~v~~--~--~~-~~d~~~l~~~~i~~~~~~~~~~~~~v~~~~~~-~tG~~~-~~~~l~~i~~~~~~~~~~li~D~  180 (356)
T 1v72_A          111 LM---TVDG--P--AA-KLDIVRLRERTREKVGDVHTTQPACVSITQAT-EVGSIY-TLDEIEAIGDVCKSSSLGLHMDG  180 (356)
T ss_dssp             EE---ECCC--G--GG-CCCHHHHHHHTTSSTTCTTSCEEEEEEEESSC-TTSCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             EE---EecC--C--CC-eEcHHHHHHHhhhcchhhccCCceEEEEEcCC-CCCccC-CHHHHHHHHHHHHHcCCeEEEEc
Confidence            10   1111  1  00 127999998 8874    12368999999875 577654 89999999999999999999999


Q ss_pred             cccCCc--ccccCcccccCC--CCCcEE--EecccccCCccchh--hheeCHHHHhhcCCCC-CCCCCCCCHHHHHHHHH
Q 017259          170 IQSGLA--RSGRMLASDWEE--VRPDMV--ILGKALGGGVIPVS--AVLADKEVMLCIQPGE-HGSTFGGNPLASAVAIA  240 (374)
Q Consensus       170 a~~~~~--~~g~~~~~~~~~--~~~d~~--s~sK~~~~G~~~~G--~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~aa~~  240 (374)
                      +|..+.  ..+..  ....+  ...|++  ++||+   |. |+|  ++++++++.+.+.... ........  +..++.+
T Consensus       181 a~~~~~~~~~~~~--~~~~~~~~~~d~~~~s~sK~---g~-~~G~g~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~  252 (356)
T 1v72_A          181 SRFANALVSLGCS--PAEMTWKAGVDALSFGATKN---GV-LAAEAIVLFNTSLATEMSYRRKRAGHLSSK--MRFLSAQ  252 (356)
T ss_dssp             TTHHHHHHHHTCC--TTTTTGGGTCCEEEECCGGG---TC-SSCEEEEESSGGGHHHHHHHHHHTTCCCSS--THHHHHH
T ss_pred             hhhHhHhccCCCC--HHHhhhhhcCCEEEEecccC---CC-cCccEEEEECHHHHhhHHHHhhccCchhhh--HHHHHHH
Confidence            997431  11211  11111  134554  56787   33 555  7777888776654221 11111111  1223333


Q ss_pred             HHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259          241 SLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH  317 (374)
Q Consensus       241 al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  317 (374)
                      +++.+.++   ++.++.+++.+++.+.|++    ++++....+..+.++|+.++        .++.+.|.++||.++++.
T Consensus       253 ~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~--------~~~~~~l~~~gi~v~~g~  320 (356)
T 1v72_A          253 IDAYLTDDLWLRNARKANAAAQRLAQGLEG----LGGVEVLGGTEANILFCRLD--------SAMIDALLKAGFGFYHDR  320 (356)
T ss_dssp             HHHHTSTTHHHHHHHHHHHHHHHHHHHHTT----CTTEEEESCCCSSEEEEEEC--------HHHHHHHHHTTCBCBCSS
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHhh----CCCcEEccCCCccEEEEEcC--------HHHHHHHHhcCeEEeccc
Confidence            44544432   2344455555555555543    22222212334566676553        378999999999998653


Q ss_pred             --CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 --DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 --~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        .+++|++++...+++++++++++|+++++
T Consensus       321 ~~~~~iRi~~~~~~~~~~i~~~~~~l~~~l~  351 (356)
T 1v72_A          321 WGPNVVRFVTSFATTAEDVDHLLNQVRLAAD  351 (356)
T ss_dssp             SSTTEEEEECCTTCCHHHHHHHHHHHHHTC-
T ss_pred             cCCCeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence              68999999989999999999999998876

>7aat_A Aspartate aminotransferase; transferase(aminotransferase); HET: PLP; 1.90A {Gallus gallus} SCOP: c.67.1.1 PDB: 1ivr_A* 1map_A* 1maq_A* 1oxo_A* 1oxp_A* 1ama_A* 1tas_A* 1tat_A* 1tar_A* 8aat_A* 9aat_A* 1aka_A* 1akb_A* 1akc_A* 3pd6_A* 3hlm_A* 3pdb_A*

Probab=99.93  E-value=3.9e-25  Score=208.19  Aligned_cols=296  Identities=16%  Similarity=0.087  Sum_probs=184.9

Q ss_pred             cHHHHHHHHhccc----C----CCeEEe--cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           22 KFPVFAERLTSMF----G----YDMVLP--MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        22 ~~~~l~~~l~~~~----~----~~~~~~--~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      ...++.+.+++++    |    .+++++  |+||++|++.+++++...  .++|     |+|++.+|+|+++.......+
T Consensus        72 g~~~lr~~ia~~~~~~~~~~~~~~~i~~v~t~G~~~al~~~~~~l~~~--~~~g-----d~Vlv~~p~~~~~~~~~~~~g  144 (401)
T 7aat_A           72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRF--FKFS-----RDVYLPKPSWGNHTPIFRDAG  144 (401)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH--CTTC-----CEEEEEESCCTTHHHHHHHTT
T ss_pred             CCHHHHHHHHHHhcCCCccccccCceEEEecCcchHHHHHHHHHHHHh--ccCC-----CEEEEcCCCchhHHHHHHHcC
Confidence            3445555555443    3    678877  999999999999887532  3667     999999999988765554443


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..........+  .+...    |++.+++.+++.+++++++++++++|++|.+. +.+.+++|.++|++||+++|+||+|
T Consensus       145 ~~~~~~~~~~~--~~~~~----d~~~l~~~l~~~~~~~~~v~i~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~Deay  217 (401)
T 7aat_A          145 LQLQAYRYYDP--KTCSL----DFTGAMEDISKIPEKSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFDMAY  217 (401)
T ss_dssp             CEEEEEECEET--TTTEE----CHHHHHHHHTTSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CeeEeeeeecc--ccCcc----CHHHHHHHHHhCCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEcccc
Confidence            22111100000  00111    78888888876556789999999999999876 8999999999999999999999999


Q ss_pred             cCCccccc---Cccccc-CCCCCc---EEEeccccc-CCccchhhhee---CHH----HHhhcCCCCCCCCCCCCHHHHH
Q 017259          172 SGLARSGR---MLASDW-EEVRPD---MVILGKALG-GGVIPVSAVLA---DKE----VMLCIQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       172 ~~~~~~g~---~~~~~~-~~~~~d---~~s~sK~~~-~G~~~~G~~~~---~~~----~~~~~~~~~~~~~~~~~~~~~~  236 (374)
                      .++.+.+.   ...... .+..++   +.|+||.++ +|+ |+||++.   +++    +...+.......+.+.+.+++.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~sK~~~~~G~-RiG~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (401)
T 7aat_A          218 QGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMNGAR  296 (401)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred             ccccCCCccccHHHHHHHHhcCCcEEEEecCCcccccccC-ceEEEEEEeCCHHHHHHHHHHHHHHHHhccCCCChHHHH
Confidence            98765432   111111 112223   359999998 799 9999775   554    3333332212223344556665


Q ss_pred             HHHHHHHHH------h--hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHHHH
Q 017259          237 VAIASLDVI------R--DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       237 aa~~al~~~------~--~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ++..+++..      .  -++..++++++++++.+.|++..  .++......+. +.+.|..+       +.+.+...+.
T Consensus       297 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~--~~~~~~~~~~~~~~~~~~~~-------~~~~~~~ll~  367 (401)
T 7aat_A          297 IASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEG--SSHNWQHITDQIGMFCFTGL-------KPEQVERLTK  367 (401)
T ss_dssp             HHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSCCHHHHHCCSSEEECCC-------CHHHHHHHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCCceecCCcceEEecCC-------CHHHHHHHHH
Confidence            555444311      1  12345566666677776666542  11111112223 34444322       2344433345


Q ss_pred             HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||.+.+.    +||+++.. +++++++++++|+++++
T Consensus       368 ~~gi~v~~~----~Ris~~~~-~~~~i~~~~~~l~~~~~  401 (401)
T 7aat_A          368 EFSIYMTKD----GRISVAGV-ASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             HHCEECCTT----CEEEGGGC-CTTTHHHHHHHHHHHHC
T ss_pred             hCCEeccCC----CeEEeccC-ChhhHHHHHHHHHHHhC
Confidence            679999865    59997644 45569999999998763

>1pff_A Methionine gamma-lyase; homocysteine; 2.50A {Trichomonas vaginalis} SCOP: c.67.1.3

Probab=99.93  E-value=1.3e-24  Score=199.28  Aligned_cols=281  Identities=12%  Similarity=0.052  Sum_probs=196.0

Q ss_pred             HHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCC
Q 017259           25 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL  104 (374)
Q Consensus        25 ~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  104 (374)
                      ++++++++++|.++.++++||++|++.+++.+     ..+|     |+|++..++|++.......+....+         
T Consensus         2 ~l~~~la~~~g~~~~i~~~sG~~a~~~~~~~~-----~~~g-----~~v~~~~~~~~~~~~~~~~~~~~~g---------   62 (331)
T 1pff_A            2 ALEGKIAKLEHAEACAATASGMGAIAASVWTF-----LKAG-----DHLISDDCLYGCTHALFEHQLRKFG---------   62 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHHHHTT---------
T ss_pred             hHHHHHHHHhCCCeEEEeCChHHHHHHHHHHh-----cCCC-----CEEEEcCCCcchHHHHHHHHHHhcC---------
Confidence            57889999888888888888999999999987     4567     9999999999876444322100000         


Q ss_pred             CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEeccccCCcccccCccc
Q 017259          105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEIQSGLARSGRMLAS  183 (374)
Q Consensus       105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea~~~~~~~g~~~~~  183 (374)
                      ..+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|++ ||+++|+||+|+.+.. ...  .
T Consensus        63 ~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~~~~~~~~~li~D~a~~~~~~-~~~--~  132 (331)
T 1pff_A           63 VEVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASPIL-TNP--L  132 (331)
T ss_dssp             CEEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHHHH-CCG--G
T ss_pred             CEEEEeCCCCHHHHHHhhc---CCCeEEEEECCCCCcCcccC----HHHHHHHHhhhcCCEEEEECCCccccc-CCh--h
Confidence            2234445568888988886   57999999999999999998    9999999999 9999999999983211 111  1


Q ss_pred             ccCCCCCcEEEecccccC-Cccc-hhhheeCH-HHHhhcCCCCCC-CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHH
Q 017259          184 DWEEVRPDMVILGKALGG-GVIP-VSAVLADK-EVMLCIQPGEHG-STFGGNPLASAVAIASLDVIRDEKLAERSAHLGE  259 (374)
Q Consensus       184 ~~~~~~~d~~s~sK~~~~-G~~~-~G~~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~  259 (374)
                       .++.+..+.|++|.+++ |. | +|++++++ ++.+.+...... .+...+++.+.++.++++.+..  ..+....+.+
T Consensus       133 -~~~~d~~~~s~~K~~~~~~~-r~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~  208 (331)
T 1pff_A          133 -DLGVDIVVHSATKYINGHTD-VVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENAQ  208 (331)
T ss_dssp             -GGTCSEEEEETTTTTSSSSS-CCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHHH
T ss_pred             -hcCCcEEEEECccccCCCCC-ceEEEEEeCcHHHHHHHHHHHHhhcCCCCCHHHHHHHHcCcchHHH--HHHHHHHHHH
Confidence             12322234478899985 66 7 78999998 888888765555 4567788888777777765422  2344445555


Q ss_pred             HHHHHHHHHHH----------hCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------
Q 017259          260 ELRQHLFKIQQ----------QFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------  316 (374)
Q Consensus       260 ~~~~~l~~~~~----------~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------  316 (374)
                      .+.+.+++...          .+|++.   ...++.+.++.+.++      +..++.+.|.++||.++..          
T Consensus       209 ~~~~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~~~gI~~~~~s~g~~~sl~~  282 (331)
T 1pff_A          209 KVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVD------GLEKAKKVLDNCHVVSLAVSLGGPESLIQ  282 (331)
T ss_dssp             HHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECS------SHHHHHHHHHTCSSSEECSSCCSSSCEEE
T ss_pred             HHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEEC------CHHHHHHHHHhCCCceeccCCCCcceeee
Confidence            55555543210          000000   001235677777765      3567888888999966432          


Q ss_pred             --------------------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          317 --------------------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       317 --------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                                          ..+++|++++...++++++.++++|+++
T Consensus       283 ~~~~~~~~~~~~~~~~~~g~~~~~iRis~~~~~t~~~i~~l~~~l~~~  330 (331)
T 1pff_A          283 HPASMTHAGVPKEEREAAGLTDNLIRLSVGCENVQDIIDDLKQALDLV  330 (331)
T ss_dssp             CHHHHTSTTSCHHHHHHTTCCTTEEEEECCSSCHHHHHHHHHHHHHTC
T ss_pred             cchhhcccccCHHHHHhcCCCCCeEEEEEecCCHHHHHHHHHHHHHHh
Confidence                                1479999999999999999999988754

>2oga_A Transaminase; PLP-dependent enzyme, desosamine, deoxysugars, antibiotics, hydrolase; HET: PGU; 2.05A {Streptomyces venezuelae} PDB: 2oge_A*

Probab=99.93  E-value=6.7e-25  Score=206.52  Aligned_cols=300  Identities=15%  Similarity=0.153  Sum_probs=201.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.+++....    +...+...++++.++++++.+++++++||++|++.+++.+.    ..+|     |+|++..++|+
T Consensus        48 ~a~~~~~~~~~----y~~~~~~~~l~~~la~~~~~~~~v~~~~Gt~a~~~~l~~~~----~~~g-----d~vl~~~~~~~  114 (399)
T 2oga_A           48 AAIARVLDSGR----YLLGPELEGFEAEFAAYCETDHAVGVNSGMDALQLALRGLG----IGPG-----DEVIVPSHTYI  114 (399)
T ss_dssp             HHHHHHHHHTC----CSSSHHHHHHHHHHHHHTTSSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCT
T ss_pred             HHHHHHHhcCC----CCCchhHHHHHHHHHHHHCCCeEEEecCHHHHHHHHHHHhC----CCCc-----CEEEECCCccH
Confidence            44555554432    22356788899999999998899999999999999998873    3556     99999999998


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      +....+...+......    +...+.   -..|+++++++++   +++++++++   |++|.+.+    +++|.++|+++
T Consensus       115 ~~~~~~~~~g~~~~~~----~~~~~~---~~~d~~~l~~~i~---~~~~~v~~~---n~tG~~~~----l~~i~~l~~~~  177 (399)
T 2oga_A          115 ASWLAVSATGATPVPV----EPHEDH---PTLDPLLVEKAIT---PRTRALLPV---HLYGHPAD----MDALRELADRH  177 (399)
T ss_dssp             HHHHHHHHTTCEEEEE----CBCSSS---SSBCHHHHHHHCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEE----ecCCCC---CCcCHHHHHHhcC---CCCeEEEEe---CCcCCccC----HHHHHHHHHHc
Confidence            8654433322211111    110000   0127899998887   468888753   45788877    99999999999


Q ss_pred             CCEEEEeccccCC-cccccCcccccCCCCCcEEEe----cccccC-CccchhhheeC-HHHHhhcCCCC-----------
Q 017259          162 NILMIADEIQSGL-ARSGRMLASDWEEVRPDMVIL----GKALGG-GVIPVSAVLAD-KEVMLCIQPGE-----------  223 (374)
Q Consensus       162 ~i~li~Dea~~~~-~~~g~~~~~~~~~~~~d~~s~----sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~-----------  223 (374)
                      |++||+||+|+.+ ...+..     .+..+|++++    ||.+++ |  ++|+++.+ +++.+.+....           
T Consensus       178 ~~~li~Dea~~~g~~~~~~~-----~~~~~di~~~S~~~sK~~~~~G--~~g~~~~~~~~~~~~l~~~~~~g~~~~~~~~  250 (399)
T 2oga_A          178 GLHIVEDAAQAHGARYRGRR-----IGAGSSVAAFSFYPGKNLGCFG--DGGAVVTGDPELAERLRMLRNYGSRQKYSHE  250 (399)
T ss_dssp             TCEECEECTTCTTCEETTEE-----TTCTTCEEEEECCTTSSSCCSS--CCEEEEESCHHHHHHHHHHHBTTCSSTTCCC
T ss_pred             CCEEEEECcccccCccCCee-----cccccCEEEEeCCCCccCCcCC--ceEEEEeCCHHHHHHHHHHHhcCcccccccc
Confidence            9999999999843 122221     2223577655    599986 5  67888875 77766553211           


Q ss_pred             -CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EE--EEeeeEEEEeccCCCchhH
Q 017259          224 -HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VR--GRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       224 -~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~--~~g~~~~~~~~~~~~~~~~  299 (374)
                       .+.++..+++.++++.++++.+.  ++.++.+++.+++.+.|+++    |++... .+  ..+.++.+.+...    +.
T Consensus       251 ~~g~~~~~~~~~~a~~~~~l~~~~--~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~----~~  320 (399)
T 2oga_A          251 TKGTNSRLDEMQAAVLRIRLAHLD--SWNGRRSALAAEYLSGLAGL----PGIGLPVTAPDTDPVWHLFTVRTE----RR  320 (399)
T ss_dssp             SCCCBCCCCHHHHHHHHHHHHTHH--HHHHHHHHHHHHHHHHTTTC----TTCBCCCCCTTEECCCSSEEEECS----SH
T ss_pred             ccccCCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCCCCcceeEEEEEECC----CH
Confidence             12334668888888888877553  34555666666666655543    222111 11  2222222434322    57


Q ss_pred             HHHHHHHHHCCeEeccCCC---------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          300 YDICLKMKERGILAKPTHD---------------------------TIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~~---------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++.+.|.++||.+++...                           +++||+++..++++|+++++++|+++++ ++
T Consensus       321 ~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~lRi~~~~~~t~edi~~~~~~l~~~~~-~l  396 (399)
T 2oga_A          321 DELRSHLDARGIDTLTHYPVPVHLSPAYAGEAPPEGSLPRAESFARQVLSLPIGPHLERPQALRVIDAVREWAE-RV  396 (399)
T ss_dssp             HHHHHHHHHTTBCCBCSCSSCGGGSHHHHTTSCCTTSCHHHHHHHHHEEEECCSTTCCHHHHHHHHHHHHHHHH-SC
T ss_pred             HHHHHHHHHCCCceecCCCCccccchhhcccCCCCCCChhHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            8899999999999987431                           5799999999999999999999999998 65

>3dr4_A Putative perosamine synthetase; deoxysugar, pyridoxal phosphate, aspartate aminotransferase, O-antigen; HET: G4M; 1.60A {Caulobacter crescentus} PDB: 3dr7_A* 3bn1_A*

Probab=99.93  E-value=3.2e-25  Score=208.11  Aligned_cols=288  Identities=13%  Similarity=0.152  Sum_probs=193.4

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+...++++.++++++.+++++++||++|++.+++.+.    ..+|     |+|++..++|++....+...+.......
T Consensus        54 ~~~~~~~l~~~la~~~~~~~~i~~~~gt~al~~~l~~~~----~~~g-----d~vl~~~~~~~~~~~~~~~~g~~~~~~~  124 (391)
T 3dr4_A           54 VGRFIVEFEKAFADYCGVKHAIACNNGTTALHLALVAMG----IGPG-----DEVIVPSLTYIASANSVTYCGATPVLVD  124 (391)
T ss_dssp             CSHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHT----CCTT-----CEEEEESSSCTHHHHHHHHTTCEEEEEC
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCchHHHHHHHHHCCCEEEEEe
Confidence            467888999999999999999999999999999999883    4566     9999999999887655544332211110


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-Cccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARS  177 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~~~~  177 (374)
                       ..+  .+..    -|+++++++++   +++++++++   |++|...+    +++|.++|++||++||+|++|+. ....
T Consensus       125 -~~~--~~~~----~d~~~l~~~~~---~~~~~v~~~---n~tG~~~~----~~~i~~l~~~~~~~li~D~a~~~g~~~~  187 (391)
T 3dr4_A          125 -NDP--RTFN----LDAAKLEALIT---PRTKAIMPV---HLYGQICD----MDPILEVARRHNLLVIEDAAEAVGATYR  187 (391)
T ss_dssp             -BCT--TTCS----BCGGGSGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred             -cCc--cccC----cCHHHHHHhcC---CCceEEEEE---CCCCChhh----HHHHHHHHHHcCCEEEEECcccccceEC
Confidence             000  0000    16788887776   578888753   46787777    99999999999999999999983 3222


Q ss_pred             ccCcccccCCCCCcEEEec----ccccCCccchhhheeC-HHHHhhcCCC--------------CCCCCCCCCHHHHHHH
Q 017259          178 GRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLAD-KEVMLCIQPG--------------EHGSTFGGNPLASAVA  238 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~~-~~~~~~~~~~--------------~~~~~~~~~~~~~~aa  238 (374)
                      +.     ..+..+|+.++|    |++++|  ++|+++.+ +.+.+.+...              ..+.++..+.+.++++
T Consensus       188 ~~-----~~~~~~di~~~S~s~~K~l~~g--~gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~~l~aa~~  260 (391)
T 3dr4_A          188 GK-----KSGSLGDCATFSFFGNAIITTG--EGGMITTNDDDLAAKMRLLRGQGMDPNRRYWFPIVGFNYRMTNIQAAIG  260 (391)
T ss_dssp             TE-----ETTSSSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHHBTTCCTTSTTCCSSCCCBCBCCHHHHHHH
T ss_pred             Ce-----eecccCCEEEEECCCCCcCCcC--CeEEEEECCHHHHHHHHHHHhcCCCCCCcccccccccccCCCHHHHHHH
Confidence            21     112224565554    888764  57777665 4454444211              1122345566666555


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-----EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       239 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      ...++.+  +++.++.+++.+++++.|+++.  + .....     ....+.++++.++.. .+.+..++.+.|.++||.+
T Consensus       261 ~~~~~~~--~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~~~~~~~~~~~~~~~i~~~~~-~~~~~~~l~~~L~~~GI~v  334 (391)
T 3dr4_A          261 LAQLERV--DEHLAARERVVGWYEQKLARLG--N-RVTKPHVALTGRHVFWMYTVRLGEG-LSTTRDQVIKDLDALGIES  334 (391)
T ss_dssp             HHHHHTH--HHHHHHHHHHHHHHHHHHGGGT--T-SEECCCCCTTSCCCCSSEEEEECSS-CSSCHHHHHHHHHHTTCCC
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhhcCC--c-cccCcCCCCCCcceeEEEEEEECCc-cchhHHHHHHHHHHCCCce
Confidence            5444433  3467777778888888777662  1 11111     122334556666541 0125889999999999999


Q ss_pred             ccCC------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          314 KPTH------------------------DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       314 ~~~~------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++..                        ...+|++++..+|++|+++++++|++++
T Consensus       335 ~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l  390 (391)
T 3dr4_A          335 RPVFHPMHIMPPYAHLATDDLKIAEACGVDGLNLPTHAGLTEADIDRVIAALDQVL  390 (391)
T ss_dssp             EECCCCGGGSGGGGGGCCTTCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTTC
T ss_pred             eecCCccccChhhhhcCcCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            8653                        3579999999999999999999998654

>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme, pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A 2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*

Probab=99.93  E-value=1.8e-24  Score=207.09  Aligned_cols=313  Identities=15%  Similarity=0.120  Sum_probs=195.5

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+...++++.|+++++.+++++++||++|++.+++++     .++|     |  ++..++||+.+.......+......
T Consensus        73 ~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~al~~l-----~~~g-----d--i~~~~~~~~~~~~~~~~~G~~~~~v  140 (456)
T 2ez2_A           73 GSENFYHLERTVQELFGFKHIVPTHQGRGAENLLSQLA-----IKPG-----Q--YVAGNMYFTTTRYHQEKNGAVFVDI  140 (456)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH-----CCTT-----C--EEEESSCCHHHHHHHHHTTCEEEEC
T ss_pred             cChhHHHHHHHHHHHhCCCcEEEeCCcHHHHHHHHHHh-----CCCC-----C--EeccccccchhHHHHHHcCCEEEEe
Confidence            45668889999999999999999999999999999888     4566     7  7888998776444433333211111


Q ss_pred             cCCCCCCCceecc--CC-CHHHHHHHHHhcC-CcEEEEEEccccC-CCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGHLKVD--FG-DITALEKIFKESG-DQIAGFLFEPIQG-EAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~~~~~--~~-d~~~le~~l~~~~-~~~~~vi~~~~~~-~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...+........+  +. |+++|++++++.. .+++++++++++| ++|.+. +.+.+++|.++|++||++||+||+|+.
T Consensus       141 ~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~t~~~~~~v~l~~p~n~ptG~~~-~~~~l~~i~~la~~~~i~li~De~~~~  219 (456)
T 2ez2_A          141 VRDEAHDAGLNIAFKGDIDLKKLQKLIDEKGAENIAYICLAVTVNLAGGQPV-SMANMRAVRELTEAHGIKVFYDATRCV  219 (456)
T ss_dssp             BCGGGGCTTCCCSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCC-CHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             cccccccccccccccCCCCHHHHHHHHHhccccceeEEEEeccCCCCCCccC-CHHHHHHHHHHHHHcCCeEEEEccccc
Confidence            1100000000011  12 8999999998542 3468899987766 778654 899999999999999999999999984


Q ss_pred             ----------CcccccCcc-c-ccCCCCCcEEEec-ccccCCccchhhhee-CHHHHhhcCCCC---CC-CCC-CCCHHH
Q 017259          174 ----------LARSGRMLA-S-DWEEVRPDMVILG-KALGGGVIPVSAVLA-DKEVMLCIQPGE---HG-STF-GGNPLA  234 (374)
Q Consensus       174 ----------~~~~g~~~~-~-~~~~~~~d~~s~s-K~~~~G~~~~G~~~~-~~~~~~~~~~~~---~~-~~~-~~~~~~  234 (374)
                                +.+.|..+. . ...+..+|++++| |.+++.- ++|++++ ++++.+.+....   .+ .++ +.+...
T Consensus       220 g~~~~~~~~~~~~~g~~~~~~~~~~~~~~d~~~~S~kk~~~~~-~gG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  298 (456)
T 2ez2_A          220 ENAYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVN-IGGFLCMNDDEMFSSAKELVVVYEGMPSYGGLAGRD  298 (456)
T ss_dssp             HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCS-SCEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHHH
T ss_pred             cccccccccccccCCcchhhhhhhhcccCCEEEEeCcccCCCC-ceeEEEECCHHHHHHHHHHHhhccCcccccCcchhH
Confidence                      334443211 0 0112235777654 5454322 4788887 677766554211   11 112 223333


Q ss_pred             HHH-HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc---CCC-chh-HHHHHHHH-H
Q 017259          235 SAV-AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TAL-PVS-AYDICLKM-K  307 (374)
Q Consensus       235 ~~a-a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~~-~~~~~~~l-~  307 (374)
                      +++ +.+.++.+. +++.++.+++.+++.+.|++.  .++ +..  +..+.++++.+..   ... ... ...+++.| .
T Consensus       299 ~~a~a~~~~~~~~-~~~~~~~~~~~~~l~~~L~~~--g~~-~~~--p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~  372 (456)
T 2ez2_A          299 MEAMAIGLREAMQ-YEYIEHRVKQVRYLGDKLKAA--GVP-IVE--PVGGHAVFLDARRFCEHLTQDEFPAQSLAASIYV  372 (456)
T ss_dssp             HHHHHHHHHHHTC-HHHHHHHHHHHHHHHHHHHHT--TCC-BCS--SCCSSEEEEEHHHHTTTSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhH-HHHHHHHHHHHHHHHHHHhcC--CCc-ccc--CCCceEEEEEhHHhcCCCChhhccHHHHHHHHHH
Confidence            333 444444332 356677777777777777663  221 221  2246677776531   110 011 33447777 5


Q ss_pred             HCCeEecc-C----------------CCCEEEEecCCC-CCHHHHHHHHHHHHHHHhccCCcC
Q 017259          308 ERGILAKP-T----------------HDTIVRLTPPLS-ISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       308 ~~Gi~v~~-~----------------~~~~lRi~~~~~-~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      ++||.+.+ +                ..+++||+++.. .+++++++++++|+++++ +....
T Consensus       373 ~~gv~~~~~g~~~~~~~~~~g~~~~~~~~~iRis~~~~~~t~e~i~~~~~~l~~~l~-~~~~~  434 (456)
T 2ez2_A          373 ETGVRSMERGIISAGRNNVTGEHHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ-HKEDI  434 (456)
T ss_dssp             HHSEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTTCCHHHHHHHHHHHHHHHH-TGGGC
T ss_pred             hcCeeeecccccccccCccccccccCCCCeEEEEeCCCCCCHHHHHHHHHHHHHHHh-hhhhc
Confidence            77987643 1                137899998876 899999999999999998 65443

>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase, pyridoxal 5'-phosphate, monovalent cation binding site; HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2

Probab=99.93  E-value=1.9e-24  Score=207.65  Aligned_cols=314  Identities=16%  Similarity=0.146  Sum_probs=194.0

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE---EEEeccCCCCcccccccccCCcc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI---IVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~---vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ..+...+++++++++++.+++++|+||++|++.++++++.+. ..+|     |+   |++. ..+++.........+...
T Consensus        74 ~~~~~~~l~~~la~~~~~~~v~~t~ggt~A~~~al~~~~~~~-~~~G-----d~~~~viv~-~~~~~~~~~~~~~~g~~~  146 (467)
T 1ax4_A           74 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYK-QKEG-----KAKNPVFIS-NFHFDTTAAHVELNGCKA  146 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHH-HHTT-----CCSSCEEEE-SSCCHHHHHHHHHTTCEE
T ss_pred             cCccHHHHHHHHHHHcCCCcEEEcCCcHHHHHHHHHHHHHhh-ccCC-----CccceEEEe-ccccchhhHHHhccCCce
Confidence            356678899999999999999999999999999999996421 1156     66   7776 322233332222222111


Q ss_pred             ccccCC-CCCCCceeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           96 AIRGFG-PLLPGHLKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        96 ~~~~~~-~~~~~~~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ...... ....+ ...++   .|+++|++++++++ ++++++++++++|++|+..++.+++++|.++|++||++||+||+
T Consensus       147 ~~~~~~~~~~~~-~~~~~~~~~d~~~le~~i~~~~~~~~~~vi~~~~~np~gG~~~~~~~l~~i~~la~~~gi~li~De~  225 (467)
T 1ax4_A          147 INIVTEKAFDSE-TYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSA  225 (467)
T ss_dssp             EECBCGGGGCTT-SCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECT
T ss_pred             eccccccccccc-ccCCcccccCHHHHHHHHHhcCCCCeeEEEEeccccCCCccCCChhHHHHHHHHHHHcCCEEEEEch
Confidence            110000 00000 00112   28999999998643 47999999999999855666899999999999999999999998


Q ss_pred             ccC---C-------cccccCcccccC---CCCCcEE--EecccccCCccchh-hheeC-H-HHHhhcCCC----CCCCCC
Q 017259          171 QSG---L-------ARSGRMLASDWE---EVRPDMV--ILGKALGGGVIPVS-AVLAD-K-EVMLCIQPG----EHGSTF  228 (374)
Q Consensus       171 ~~~---~-------~~~g~~~~~~~~---~~~~d~~--s~sK~~~~G~~~~G-~~~~~-~-~~~~~~~~~----~~~~~~  228 (374)
                      +..   +       ++.+.... +..   ...+|++  ++||.++  . ++| +++.+ + ++++.+...    ....++
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~d~~~~s~sK~~g--~-~~Gg~~~~~d~~~l~~~~~~~~~~~~~~~~~  301 (467)
T 1ax4_A          226 RFCENAYFIKARDPKYKNATIK-EVIFDMYKYADALTMSAKKDPL--L-NIGGLVAIRDNEEIFTLARQRCVPMEGFVTY  301 (467)
T ss_dssp             THHHHHHHHHHHCGGGTTCCHH-HHHHHHGGGCSEEEEETTSTTC--C-SSCEEEEESSCHHHHHHHHHHHHHHTCSTTT
T ss_pred             hhhhcchhccccccccCCCchh-hhhhhhccccceEEEeccccCC--C-CcceEEEeCCHHHHHHHHHhhcccccccccc
Confidence            652   0       12221100 000   0123554  6668765  4 544 45566 5 666654321    112233


Q ss_pred             CC-CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEE-------eccCCCchhHH
Q 017259          229 GG-NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE-------FDKTALPVSAY  300 (374)
Q Consensus       229 ~~-~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~-------~~~~~~~~~~~  300 (374)
                      .. +...+.++..+++.+.+++..++..++.+++.+.|++.  .++ +.  .+..+.++|+.       ++..  +.+..
T Consensus       302 ~~~~~~~~~a~~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-~~--~~~~~~~~~~~~~~~~~~~~~~--~~~~~  374 (467)
T 1ax4_A          302 GGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREA--GIP-IQ--YPTGGHAVFVDCKKLVPQIPGD--QFPAQ  374 (467)
T ss_dssp             TTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--TCC-BC--SSCCSSEEEEESTTTCTTSCGG--GCHHH
T ss_pred             CCccchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHhC--CCC-cc--cCCCceEEEEehhhhccccccC--CCCHH
Confidence            33 33333333335554433335555567777788877762  221 22  22346677776       3211  12577


Q ss_pred             HHHHHH-HHCCeEecc-C----------C------CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          301 DICLKM-KERGILAKP-T----------H------DTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       301 ~~~~~l-~~~Gi~v~~-~----------~------~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      ++++.| .++||.+.+ +          +      .+++||+++ ...+++++++++++|+++++ .+...
T Consensus       375 ~l~~~L~~~~gv~v~~~g~~~~~~~~~~g~~~~~~~~~iRls~~~~~~t~e~i~~~~~~l~~~~~-~~~~~  444 (467)
T 1ax4_A          375 AVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE-KFATL  444 (467)
T ss_dssp             HHHHHHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH-HHTTC
T ss_pred             HHHHHHHHhcCceeeecCccccccccccccccccccceEEEecccccCCHHHHHHHHHHHHHHHH-hhhcC
Confidence            899999 888999977 2          1      279999988 45899999999999999998 65443

>2cb1_A O-acetyl homoserine sulfhydrylase; PLP enzyme, lyase, riken structural genomics/proteomics initiative, RSGI, structural genomics; HET: LLP; 2.0A {Thermus thermophilus}

Probab=99.93  E-value=2.6e-24  Score=203.31  Aligned_cols=286  Identities=14%  Similarity=0.087  Sum_probs=195.1

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.++.+.++..++++++++++++.+++++++||++|++.+++.+     .++|     |+|++..++|++.........
T Consensus        47 ~~~y~~~~~~~~~~l~~~la~~~g~~~~~~~~~gt~a~~~al~~l-----~~~g-----d~vi~~~~~~~~~~~~~~~~~  116 (412)
T 2cb1_A           47 GYVYARQKDPTAKALEERLKALEGALEAVVLASGQAATFAALLAL-----LRPG-----DEVVAAKGLFGQTIGLFGQVL  116 (412)
T ss_dssp             SCSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEETTCCHHHHHHHHHTT
T ss_pred             CcCcCCCCChHHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchhHHHHHHHHH
Confidence            333444456778999999999999999999999999999999877     4567     999999999876443322111


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..         ....+..++. |+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|
T Consensus       117 ~~---------~g~~~~~~~~-~~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~l~~~~~~~li~D~~~  179 (412)
T 2cb1_A          117 SL---------MGVTVRYVDP-EPEAVREALS---AKTRAVFVETVANPALLVPD----LEALATLAEEAGVALVVDNTF  179 (412)
T ss_dssp             TT---------TTCEEEEECS-SHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGG
T ss_pred             HH---------cCCEEEEECC-CHHHHHHHhc---cCCeEEEEeCCCCCCccccc----HHHHHHHHHHcCCEEEEECCC
Confidence            10         1122344444 4888988886   57999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCH----------------------------HHHhhcC
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADK----------------------------EVMLCIQ  220 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~----------------------------~~~~~~~  220 (374)
                      ++++.....     ....+|++  |++|.+++ |. ++|+++..+                            ++.+.++
T Consensus       180 ~~~~~~~~~-----~~~~~di~~~S~~K~~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~r  253 (412)
T 2cb1_A          180 GAAGALCRP-----LAWGAHVVVESLTKWASGHGS-VLGGAVLSRETELWRNYPQFLQPDLKGQIPWEALRARCFPERVR  253 (412)
T ss_dssp             GTTTTSCCG-----GGGTCSEEEEETTTTTTCSSC-CCCEEEEECCCSGGGGSGGGGCC-------HHHHGGGHHHHHHH
T ss_pred             ccccccCCc-----cccCCeEEEECCcccccCCCC-cEEEEEEeccccccccccccccccccccchhhccchHHHHHHHH
Confidence            855211111     12345665  68899975 66 888876533                            2223332


Q ss_pred             CCC-CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee--E---------------EEE
Q 017259          221 PGE-HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE--V---------------RGR  282 (374)
Q Consensus       221 ~~~-~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~--~---------------~~~  282 (374)
                      ... ....+..++...+.+...++.+  +...++.+++.+++.+.|.+.    +++...  .               .+.
T Consensus       254 ~~~~~~~g~~~~~~~a~~~~~~l~~l--~~~~~~~~~~~~~l~~~L~~~----~~v~~v~~p~~~~~p~~~~~~~~~~~~  327 (412)
T 2cb1_A          254 TLGLSLCGMALSPFNAYLLFQGLETV--ALRVARMSETARFLAERLQGH----PKVKALRYPGLPEDPAHRNARKYLASG  327 (412)
T ss_dssp             HHHTTTTCCCCCHHHHHHHHHHGGGH--HHHHHHHHHHHHHHHHHHHTC----TTCSEEECTTSTTCTTHHHHHHHCSSS
T ss_pred             HHHHHhcCCCCChHHhHHHHcCCchH--HHHHHHHHHHHHHHHHHHHcC----CCeeEEECCCCCCCccHHHHHHhCCCC
Confidence            211 1122344666666666555443  223455556677777766543    222100  0               235


Q ss_pred             eeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------------------------------CCEEEEecCCCCCHH
Q 017259          283 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------------------------------DTIVRLTPPLSISSN  332 (374)
Q Consensus       283 g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------------------------------~~~lRi~~~~~~~~e  332 (374)
                      +.++.|.+ .     +...+.+.|.+.||.+ ...                              .+.+|++++..++++
T Consensus       328 ~~iv~~~~-~-----~~~~~~~~l~~~~i~~-~~s~g~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iR~s~g~~~~~~  400 (412)
T 2cb1_A          328 GPILTLDL-G-----DLERASRFLGAIRLLK-AANLGDARTLLVHPWTTTHSRLKEEARLQAGVTPGLVRVSVGLEDPLD  400 (412)
T ss_dssp             CSEEEEEC-S-----SHHHHHHHHHHCSSEE-CSCCSCSSCEEECTTTTTTTTSCHHHHHHTTCCTTEEEEECCSSCHHH
T ss_pred             ceEEEEEe-C-----CHHHHHHHHHhCCeee-ecccCCCcceeecCcccccccCCHHHHHhcCCCCCeEEEEeccCCHHH
Confidence            67888877 3     3567788888889886 320                              579999999999999


Q ss_pred             HHHHHHHHHHH
Q 017259          333 ELQEGSKALHD  343 (374)
Q Consensus       333 ~i~~~~~~l~~  343 (374)
                      +++.+.++|++
T Consensus       401 ~i~~l~~al~~  411 (412)
T 2cb1_A          401 LLALFEEALEA  411 (412)
T ss_dssp             HHHHHHHHHHC
T ss_pred             HHHHHHHHHhh
Confidence            99999988864

>3uwc_A Nucleotide-sugar aminotransferase; lipopolysaccharide biosynthesis; HET: MSE PMP; 1.80A {Coxiella burnetii}

Probab=99.93  E-value=8.2e-25  Score=203.94  Aligned_cols=284  Identities=14%  Similarity=0.223  Sum_probs=192.3

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      +++.+...++++.++++++.+++++++||++|++.+++.+.    .++|     |+|++..++|++........+..   
T Consensus        34 ~~~~~~~~~l~~~la~~~~~~~~~~~~~gt~a~~~~~~~~~----~~~g-----d~v~~~~~~~~~~~~~~~~~g~~---  101 (374)
T 3uwc_A           34 FTLGAELEKFEKRFAALHNAPHAIGVGTGTDALAMSFKMLN----IGAG-----DEVITCANTFIASVGAIVQAGAT---  101 (374)
T ss_dssp             CSSCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCHHHHHHHHHTTCE---
T ss_pred             cccChhHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCC-----CEEEECCCccHHHHHHHHHcCCE---
Confidence            34577889999999999999999999999999999998773    4556     99999999998876554433321   


Q ss_pred             cccCCCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           97 IRGFGPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                                +..++.+     |+++++++++   +++++++   +.|++|.+.+    +++|.++|++||+++|+||+|
T Consensus       102 ----------~~~~~~~~~~~~d~~~l~~~~~---~~~~~v~---~~n~~G~~~~----~~~i~~~~~~~~~~li~D~~~  161 (374)
T 3uwc_A          102 ----------PVLVDSENGYVIDPEKIEAAIT---DKTKAIM---PVHYTGNIAD----MPALAKIAKKHNLHIVEDACQ  161 (374)
T ss_dssp             ----------EEEECBCTTSSBCGGGTGGGCC---TTEEEEC---CBCGGGCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             ----------EEEEecCCCCCcCHHHHHHhCC---CCceEEE---EeCCcCCcCC----HHHHHHHHHHcCCEEEEeCCC
Confidence                      2222222     7888888776   4788777   4567888887    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEec----ccccC-CccchhhheeC-HHHHhhcCCC------------CCCCCCCCCHH
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------------EHGSTFGGNPL  233 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~~-~~~~~~~~~~------------~~~~~~~~~~~  233 (374)
                      +.+..    +.....+..+|++++|    |++++ |.  +|+++.+ +.+.+.+...            ..+.++..+.+
T Consensus       162 ~~g~~----~~~~~~~~~~d~~~~s~~~~K~l~~~g~--~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (374)
T 3uwc_A          162 TILGR----INDKFVGSWGQFACFSLHPLKNLNVWSD--AGVIITHSDEYAEKLRLYRNHGLINRDVCVEYGINCRMDTI  235 (374)
T ss_dssp             CTTCE----ETTEETTSSSSEEEEECSSSSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEESSCCCBCBCCHH
T ss_pred             ccCce----eCCeeccccccEEEEeCCCCCcCCccce--eEEEEeCCHHHHHHHHHHHhcCccccCccccccccCCCCHH
Confidence            84321    1122233335777555    99986 54  6677665 4554443321            11233444555


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHH--hCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQ--QFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      .++++...++.+  +++.++.+++.+++.+.|+++..  .++ ... ......+..+.+...    +..++.+.|.++||
T Consensus       236 ~aa~~~~~~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~-~~~-~~~~~~~~~~~~~~~----~~~~l~~~L~~~gi  307 (374)
T 3uwc_A          236 QAVIANRLMNQL--ETITEKRRGIAHLYDQSFVDLSEFIDVP-VRR-EGVYHVFHIYVLRVK----YRDQLFQYLKDNGI  307 (374)
T ss_dssp             HHHHHHHHGGGH--HHHHHHHHHHHHHHHHHTGGGTTTEECC-CCC-TTEECCCSSEEEEET----THHHHHHHHHHTTB
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCCCeEEec-cCC-CCCceeeEEEEEEcC----CHHHHHHHHHHCCC
Confidence            555544433322  34566666777777776665431  111 000 011223222333322    57899999999999


Q ss_pred             EeccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          312 LAKPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       312 ~v~~~~---------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+++..                           ...+|++++..+|++|+++++++|+++++
T Consensus       308 ~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~edi~~~~~~l~~~l~  369 (374)
T 3uwc_A          308 EVKIHYPIAMHLQPAAKSLGYQQGDFPMAEKHGEAVITLPAHPYLTEEEINYIIKKVREFYL  369 (374)
T ss_dssp             CCBCSCSSCGGGSGGGGGGCCCTTSCHHHHHHHHHEEEECCCTTSCHHHHHHHHHHHHHHHH
T ss_pred             ccccCCCCccccChhhhhcCCccCCCccHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHHH
Confidence            998763                           17899999999999999999999999998

>3mc6_A Sphingosine-1-phosphate lyase; carboxy-lyase activity, pyridoxyl phosphate; HET: LLP; 3.15A {Saccharomyces cerevisiae}

Probab=99.92  E-value=9.3e-25  Score=211.41  Aligned_cols=301  Identities=12%  Similarity=0.065  Sum_probs=197.2

Q ss_pred             HHHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           23 FPVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..++++++++++|.+    ++++++||++|+..++++++.+....+|.+  +++|++..++|.+....+...+.... ..
T Consensus       109 ~~~~~~~la~~~g~~~~~~~~~~~~ggt~a~~~a~~a~~~~~~~~~g~~--~~~Vi~~~~~h~~~~~~~~~~G~~~~-~v  185 (497)
T 3mc6_A          109 ESEVVSMVLRMFNAPSDTGCGTTTSGGTESLLLACLSAKMYALHHRGIT--EPEIIAPVTAHAGFDKAAYYFGMKLR-HV  185 (497)
T ss_dssp             HHHHHHHHHHHTTCCTTTCCEEEESSHHHHHHHHHHHHHHHHHHHSCCS--SCEEEEETTSCHHHHHHHHHSCCEEE-EE
T ss_pred             HHHHHHHHHHHhCCCCCCCeEEEcCcHHHHHHHHHHHHHHHHHhcCCCC--CceEEEeCCccHHHHHHHHHcCCeEE-EE
Confidence            345777777777655    799999999999999999976532334422  37899999987654443333322111 11


Q ss_pred             cCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           99 GFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        99 ~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                         +... +..    .|+++|+++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++|+++...
T Consensus       186 ---~~~~~~~~----~d~~~l~~~i~---~~~~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~livD~a~~~~~~~  251 (497)
T 3mc6_A          186 ---ELDPTTYQ----VDLGKVKKFIN---KNTVLLVGSAPNFPHGIADD----IEGLGKIAQKYKLPLHVDSCLGSFIVS  251 (497)
T ss_dssp             ---CBCTTTCS----BCTTTTGGGCC---SSEEEEEEETTCTTTCCCCS----CTTTTTHHHHTTCCEEEETTTTHHHHG
T ss_pred             ---ecCcccCc----CCHHHHHHHHh---hCCEEEEEECCCCCCCcCCC----HHHHHHHHHHhCCEEEEECcchhhhhh
Confidence               1100 001    16788888886   57899999999999999988    999999999999999999999854221


Q ss_pred             -----c--c--CcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC----CCCC-----CC--CCCHHHH
Q 017259          178 -----G--R--MLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG----EHGS-----TF--GGNPLAS  235 (374)
Q Consensus       178 -----g--~--~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~----~~~~-----~~--~~~~~~~  235 (374)
                           |  .  .+.....+  .|++  +++|.+.+|. ++|+++.+++........    ..+.     ++  +.+....
T Consensus       252 f~~~~~~~~~~~~~~~~~g--~d~~~~s~~K~l~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~  328 (497)
T 3mc6_A          252 FMEKAGYKNLPLLDFRVPG--VTSISCDTHKYGFAPK-GSSVIMYRNSDLRMHQYYVNPAWTGGLYGSPTLAGSRPGAIV  328 (497)
T ss_dssp             GGTTTTCCSCCCCSTTSTT--CCEEEEETTTTTCCCS-SCEEEECSSHHHHTTTSCCBTTCTTSCBCCSSSCSSCBHHHH
T ss_pred             hhhhhcccCCccccccCCC--CcEEEECchhhcCCCC-CceeEEecCHHHHhhhhcccccccCCCcCCcCcccCCcchhH
Confidence                 1  1  12222223  3555  4458887888 899988876654443211    1111     11  1122334


Q ss_pred             HHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          236 AVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       236 ~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      ++..++++.+..+   ++.++..++.+++.+.|++.   +|++.....+.+.++.+..+..    +..++.+.|.++||.
T Consensus       329 ~a~~aal~~l~~~~~~~~~~~~~~~~~~l~~~L~~~---~~g~~~~~~~~~~~v~~~~~~~----~~~~l~~~L~~~Gi~  401 (497)
T 3mc6_A          329 VGCWATMVNMGENGYIESCQEIVGAAMKFKKYIQEN---IPDLDIMGNPRYSVISFSSKTL----NIHELSDRLSKKGWH  401 (497)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS---CTTCEECSCCCSSEEEEECTTT----THHHHHHHHHTTTCB
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc---CCCEEEecCCCeeEEEEeCCCC----CHHHHHHHHHhCCEE
Confidence            4455556555443   44556666677777766652   2233222234566666655432    688999999999999


Q ss_pred             eccCC-CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          313 AKPTH-DTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       313 v~~~~-~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      ++... ++.+|++++ ..+++++++++++|+++++ ++...
T Consensus       402 v~~~~~~~~~ri~~~-~~t~e~i~~~~~~L~~~l~-~~~~~  440 (497)
T 3mc6_A          402 FNALQKPVALHMAFT-RLSAHVVDEICDILRTTVQ-ELKSE  440 (497)
T ss_dssp             CEECCSSCCEEEECC-TTTTCTHHHHHHHHHHHHH-HHTCC
T ss_pred             EecCCCCCeEEEEEe-CCCHHHHHHHHHHHHHHHH-HHHhC
Confidence            88764 567899988 7799999999999999998 66544

>1b9h_A AHBA synthase, protein (3-amino-5-hydroxybenzoic acid synthase); rifamycin biosynthesis (RIFD gene); HET: PLP; 2.00A {Amycolatopsis mediterranei} SCOP: c.67.1.4 PDB: 1b9i_A*

Probab=99.92  E-value=2.9e-24  Score=201.33  Aligned_cols=304  Identities=14%  Similarity=0.122  Sum_probs=200.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+++.++.  ..++..+...++++.++++++.++.++++||++|++.+++.+.    ..+|     |+|++..++|+
T Consensus        21 ~a~~~~l~~~~--~~~~~~~~~~~l~~~la~~~~~~~~i~~~sGt~al~~~l~~l~----~~~g-----d~Vi~~~~~~~   89 (388)
T 1b9h_A           21 NGLVRALEQGQ--WWRMGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG----VGPG-----TEVIVPAFTFI   89 (388)
T ss_dssp             HHHHHHHHTSC--CBTTTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCT
T ss_pred             HHHHHHHHcCC--eeecCCHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCccH
Confidence            45555555432  2335577899999999999988877777888999999998873    3556     99999999998


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +....+...+......    +...+    .+ .|+++|+++++   +++++++   ++|++|.+.+    +++|.++|++
T Consensus        90 ~~~~~~~~~g~~~~~v----~~~~~----~~~~d~~~l~~~i~---~~~~~v~---~~n~tG~~~~----l~~i~~la~~  151 (388)
T 1b9h_A           90 SSSQAAQRLGAVTVPV----DVDAA----TYNLDPEAVAAAVT---PRTKVIM---PVHMAGLMAD----MDALAKISAD  151 (388)
T ss_dssp             HHHHHHHHTTCEEEEE----CBCTT----TCCBCHHHHHHHCC---TTEEEEC---CBCGGGCCCC----HHHHHHHHHH
T ss_pred             HHHHHHHHcCCEEEEE----ecCCC----cCCCCHHHHHHhcC---cCceEEE---EeCCccCcCC----HHHHHHHHHH
Confidence            8765543332221111    11000    01 17899998886   4688777   5566888887    9999999999


Q ss_pred             cCCEEEEeccccC-CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH-H--HhhcC---CCC--------
Q 017259          161 YNILMIADEIQSG-LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-V--MLCIQ---PGE--------  223 (374)
Q Consensus       161 ~~i~li~Dea~~~-~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~-~--~~~~~---~~~--------  223 (374)
                      ||++||+|++|+. ..+.|..  ...++ ..++.|||  |+++| . ++|+++++++ +  .+.+.   ...        
T Consensus       152 ~~~~li~D~a~~~g~~~~~~~--~~~~~-~i~~~S~s~~K~l~g-~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  226 (388)
T 1b9h_A          152 TGVPLLQDAAHAHGARWQGKR--VGELD-SIATFSFQNGKLMTA-G-EGGAVVFPDGETEKYETAFLRHSCGRPRDDRRY  226 (388)
T ss_dssp             HTCCBCEECTTCTTCEETTEE--GGGSS-SCEEEECCTTSSSCS-S-SCEEEEECTTCHHHHHHHHHHTBTTCCTTCSSC
T ss_pred             cCCEEEEecchhcCCccCCee--ccccc-ceEEEEccCCCcccC-C-CeEEEEECCHHHHHHHHHHHHHhCCCCccCccc
Confidence            9999999999983 4332222  12222 34566777  56655 4 7888888765 5  45442   110        


Q ss_pred             ----CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------EEEeeeEEEEeccC
Q 017259          224 ----HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------RGRGLFNAVEFDKT  293 (374)
Q Consensus       224 ----~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------~~~g~~~~~~~~~~  293 (374)
                          .+.++..+.+.++++...++.+.  +..++.+++.+++.+.|+++    |++....      +..+.++++.++..
T Consensus       227 ~~~~~g~~~~~~~~~~a~~~~~~~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~  300 (388)
T 1b9h_A          227 FHKIAGSNMRLNEFSASVLRAQLARLD--EQIAVRDERWTLLSRLLGAI----DGVVPQGGDVRADRNSHYMAMFRIPGL  300 (388)
T ss_dssp             CCCSCCCBCBCBHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTS----TTCEECCCCTTCCBCCCSEEEEECTTC
T ss_pred             eeecccccCCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhccC----CCccccCCCcCCCccceEEEEEEeCCc
Confidence                01223356666555555554332  34566666677776666543    2222111      22367788877642


Q ss_pred             CCchhHHHHHHHHHHCCeEeccCCC---------------------------------CEEEEecCCCC-CHHHHHHHHH
Q 017259          294 ALPVSAYDICLKMKERGILAKPTHD---------------------------------TIVRLTPPLSI-SSNELQEGSK  339 (374)
Q Consensus       294 ~~~~~~~~~~~~l~~~Gi~v~~~~~---------------------------------~~lRi~~~~~~-~~e~i~~~~~  339 (374)
                      . +.+..++.+.|.++||.++++..                                 ..+|++++..+ |++|++++++
T Consensus       301 ~-~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~~t~edi~~~~~  379 (388)
T 1b9h_A          301 T-EERRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAE  379 (388)
T ss_dssp             C-HHHHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHH
T ss_pred             C-cccHHHHHHHHHHCCCCcccccCccccChHhHhcCCCcccccccccCCHHHHHHHhCeEEecCCCCCCCHHHHHHHHH
Confidence            0 12467899999999999975421                                 25899988888 9999999999


Q ss_pred             HHHHHHh
Q 017259          340 ALHDVLE  346 (374)
Q Consensus       340 ~l~~~~~  346 (374)
                      .|+++++
T Consensus       380 ~l~~~~~  386 (388)
T 1b9h_A          380 IIADAVA  386 (388)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            9999886

>3frk_A QDTB; aminotransferase, sugar-modification, natural porduct; HET: TQP; 2.15A {Thermoanaerobacteriumthermosaccharolyticum}

Probab=99.92  E-value=8.2e-25  Score=203.98  Aligned_cols=283  Identities=13%  Similarity=0.131  Sum_probs=190.1

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +..+...++++.++++++.+++++++||++|++.+++.+.    .++|     |+|++..++|++........+...   
T Consensus        33 ~~~~~~~~l~~~la~~~~~~~~i~~~sgt~al~~~l~~l~----~~~g-----d~Vi~~~~~~~~~~~~~~~~g~~~---  100 (373)
T 3frk_A           33 ILGDEDKKFEQEFADYCNVNYCIGCGNGLDALHLILKGYD----IGFG-----DEVIVPSNTFIATALAVSYTGAKP---  100 (373)
T ss_dssp             SSSHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEETTSCTHHHHHHHHHSCEE---
T ss_pred             cCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCCcHHHHHHHHHcCCEE---
Confidence            4567889999999999999999999999999999998873    4566     999999999988655543333221   


Q ss_pred             ccCCCCCCCceeccCC------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           98 RGFGPLLPGHLKVDFG------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                                ..++.+      |+++++++++   +++++++   +.|++|...+    +++|.++|++||+++|+|++|
T Consensus       101 ----------~~~~~~~~~~~~d~~~l~~~l~---~~~~~v~---~~n~~G~~~~----l~~i~~l~~~~~~~li~D~a~  160 (373)
T 3frk_A          101 ----------IFVEPDIRTYNIDPSLIESAIT---EKTKAII---AVHLYGQPAD----MDEIKRIAKKYNLKLIEDAAQ  160 (373)
T ss_dssp             ----------EEECEETTTTEECGGGTGGGCC---TTEEEEE---EECCTTCCCC----HHHHHHHHHHHTCEEEEECTT
T ss_pred             ----------EEEeccccccCcCHHHHHHhcC---CCCeEEE---EECCCcCccc----HHHHHHHHHHcCCEEEEECCc
Confidence                      112211      7888888876   4788887   3457788887    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEec----ccccC-CccchhhheeC-HHHHhhcCCC------------CCCCCCCCCHH
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLAD-KEVMLCIQPG------------EHGSTFGGNPL  233 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~~-~~~~~~~~~~------------~~~~~~~~~~~  233 (374)
                      +....    +.....+..+|+.++|    |.+++ |.  +|+++.+ +++.+.+...            ..+.++..+.+
T Consensus       161 ~~g~~----~~~~~~~~~~d~~~~S~~~~K~l~~~g~--gg~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~  234 (373)
T 3frk_A          161 AHGSL----YKGMKVGSLGDAAGFSFYPAKNLGSLGD--GGAVVTNDKDLAEKIKALSNYGSEKKYHHIYKGFNSRLDEL  234 (373)
T ss_dssp             CTTCE----ETTEETTSSSSEEEEECCTTSSSCCSSS--CEEEEESCHHHHHHHHHHHBTTCSBTTBCCSCCCBCCCCHH
T ss_pred             ccCCE----ECCEeccccccEEEEeCcCCCccCccce--eEEEEeCCHHHHHHHHHHHhcCcccCCccccccccCCCCHH
Confidence            83211    1112233335777665    99987 53  6677765 4454444311            12334556777


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      .++++...++.+  +++.++.+++.+++.+.|+++...++...  ......+..+.+...    +..++.+.|.++||.+
T Consensus       235 ~aa~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~~~~~~~~~----~~~~l~~~L~~~gI~v  306 (373)
T 3frk_A          235 QAGFLRVKLKYL--DKWNEERRKIAQKYIAGINNPNVIIPVEA--DYAKHVWYTFVIRSE----KRDELQKYLNNNGIGT  306 (373)
T ss_dssp             HHHHHHHHHHTH--HHHHHHHHHHHHHHHHHCCCTTEECCCCC--TTEECCCSSEEEEES----SHHHHHHHHHHTTBCC
T ss_pred             HHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhccCceEeccCC--CCCceeeEEEEEEeC----CHHHHHHHHHHCCCCc
Confidence            666655554433  34566666667777666654421111000  011223222333322    5789999999999999


Q ss_pred             ccCC---------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 KPTH---------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ~~~~---------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++..                           ...+|++++..+|++|+++++++|+++..
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lrl~~~~~~t~~di~~~~~~l~~~~~  366 (373)
T 3frk_A          307 LIHYPIPIHLQQAYKDLGFKTGNFPIAEKIANEILSIPIWYGMKNEEIEYVIDKINAWKL  366 (373)
T ss_dssp             BCSCSSCGGGSGGGGGGCCCTTSSHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHTCC-
T ss_pred             ccCcCCccccChHHHhcCCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHhh
Confidence            7532                           16899999999999999999998876654

>2bkw_A Alanine-glyoxylate aminotransferase 1; analine-glyoxylate aminotransferase, pyridoxal-5-phosphate, SAD, glycolate pathway; HET: LLP; 2.57A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=2.7e-24  Score=201.05  Aligned_cols=284  Identities=14%  Similarity=0.111  Sum_probs=192.9

Q ss_pred             HHHHHHHHhcccCC------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe-ccCCCCcccccccccCCcc
Q 017259           23 FPVFAERLTSMFGY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC-CGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        23 ~~~l~~~l~~~~~~------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~-~~~yhg~~~~~~~~~~~~~   95 (374)
                      ..+++++++++++.      +++++++||++|++.+++.+...  .++|     |+|++. .+.||..........+.  
T Consensus        40 ~~~~~~~l~~~~~~~~~~~~~~v~~~~g~t~al~~~~~~~~~~--~~~g-----d~vlv~~~~~~~~~~~~~~~~~g~--  110 (385)
T 2bkw_A           40 FQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS--KAPN-----KNVLVVSTGTFSDRFADCLRSYGA--  110 (385)
T ss_dssp             HHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT--TCSC-----CEEEEECSSHHHHHHHHHHHHTTC--
T ss_pred             HHHHHHHHHHHhCCCCCCCCceEEEcCchHHHHHHHHHHHhcc--CCCC-----CeEEEEcCCcchHHHHHHHHHcCC--
Confidence            45566777776533      68999999999999999988300  0566     888777 55665543111111111  


Q ss_pred             ccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEE
Q 017259           96 AIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIA  167 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~  167 (374)
                                .+..++.      .|+++|++++++  .+++++++++++|++|.+.+    +++|.++|++|  |++||+
T Consensus       111 ----------~~~~v~~~~~~~~~d~~~l~~~l~~--~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~~~li~  174 (385)
T 2bkw_A          111 ----------QVDVVRPLKIGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVV  174 (385)
T ss_dssp             ----------EEEEECCSSTTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEE
T ss_pred             ----------ceEEEecCCCCCCCCHHHHHHHHhc--CCCCEEEEEccCCCcCeEcC----HHHHHHHHHhhCCCCEEEE
Confidence                      1111221      279999999984  26788999999999999998    99999999999  999999


Q ss_pred             eccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHh-hcCC----------------------C
Q 017259          168 DEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVML-CIQP----------------------G  222 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~-~~~~----------------------~  222 (374)
                      ||+|+ ++..  .+...  ...+|++  |++|+++|+. ++|++++++++++ .+..                      .
T Consensus       175 D~a~~-~~~~--~~~~~--~~~~d~~~~s~~K~~~~~~-G~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~  248 (385)
T 2bkw_A          175 DAVCS-IGCE--EFEFD--EWGVDFALTASQKAIGAPA-GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENY  248 (385)
T ss_dssp             ECTTT-TTTS--CCCTT--TTTCSEEEEESSSTTCCCS-CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHH
T ss_pred             ECccc-cCCc--ccccc--ccCceEEEecCccccccCC-cceEEEEcHHHHHHHHhhccCCCCCceeecHHHHhhHHHhh
Confidence            99997 2211  11222  2345655  5679988765 6789999887766 4421                      0


Q ss_pred             CC--CC-CCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHH-HHHHHhCCCceeeE--E-EEeeeEEEEecc
Q 017259          223 EH--GS-TFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHL-FKIQQQFPNYVKEV--R-GRGLFNAVEFDK  292 (374)
Q Consensus       223 ~~--~~-~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~~~--~-~~g~~~~~~~~~  292 (374)
                      ..  +. .++.+..++.++.++++.+.+.   ++.++++++++++.+.| +++  .+ ......  . ..+.++++.+++
T Consensus       249 ~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~--g~-~~~~~~~~~~~~~~~~~~~~~~  325 (385)
T 2bkw_A          249 EAGKGAYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGL--QL-TSVSRYPSNMSAHGLTAVYVAD  325 (385)
T ss_dssp             HTTCCCCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTT--CC-EESSCSSSTTBCSSCEEEECSC
T ss_pred             hccCCCCCCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHhc--Cc-eecccCcccccCCceEEEecCC
Confidence            00  11 2356777888888888876543   44666777777777777 543  11 011100  0 246778877652


Q ss_pred             CCCchhHHHHHHHHHHCCeEeccCC-----CCEEEEe-cC---CCCCHHHHHHHHHHHHHHHh
Q 017259          293 TALPVSAYDICLKMKERGILAKPTH-----DTIVRLT-PP---LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       293 ~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~-~~---~~~~~e~i~~~~~~l~~~~~  346 (374)
                            ..++.+.|.++||.++++.     .+++||+ ++   +..+++++++++++|+++++
T Consensus       326 ------~~~~~~~l~~~gi~v~~g~~~~~~~~~iRis~~~~~~~~~~~e~i~~~~~~l~~~~~  382 (385)
T 2bkw_A          326 ------PPDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKLALQ  382 (385)
T ss_dssp             ------HHHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHHHTT
T ss_pred             ------HHHHHHHHHHCCeEEeCCCCcccCCCEEEEEccccccccCCHHHHHHHHHHHHHHHH
Confidence                  5789999999999998863     5799999 55   35799999999999999887

>4eu1_A Mitochondrial aspartate aminotransferase; ssgcid, structural genomics, SEA structural genomics center for infectious disease; HET: LLP; 2.30A {Trypanosoma brucei}

Probab=99.92  E-value=5e-25  Score=208.06  Aligned_cols=297  Identities=13%  Similarity=0.107  Sum_probs=193.2

Q ss_pred             CCcHHHHHHHHhccc-C-------CCeE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           20 NDKFPVFAERLTSMF-G-------YDMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~-~-------~~~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .....++++.+++++ +       .+++  ..+.+|+++++.+..+++..  .++|     |+|++.+|+|+++......
T Consensus        78 ~~g~~~lr~~ia~~~~~~~~~~~~~~~i~~~~~~~g~ga~~~~~~~~~~~--~~~g-----d~Vlv~~p~y~~~~~~~~~  150 (409)
T 4eu1_A           78 VTGIASFVEEAQKLCFGPTCAALRDGRIASCQTLGGTGALRIGGDLLNRF--VANC-----NRIYGPDVGYPNHESIFAK  150 (409)
T ss_dssp             TTCCHHHHHHHHHHHHCSSCHHHHTTCEEEEEESHHHHHHHHHHHHGGGT--SSSC-----CEEEEESSCCTHHHHHHHH
T ss_pred             CCCcHHHHHHHHHHHcCCCchhhccCceeeeecccchHHHHHHHHHHHHh--cCCC-----CEEEEeCCCcHhHHHHHHH
Confidence            444567777777754 3       3466  45999999999877655432  5677     9999999999877655544


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      .+...........  .+..    .|+++++++++++++.++++++++++|++|.+. +.+.+++|.++|++||+++|+||
T Consensus       151 ~g~~~~~~~~~~~--~~~~----~d~~~l~~~l~~~~~~~~~i~~~~p~NPtG~~~-~~~~l~~i~~~~~~~~~~li~De  223 (409)
T 4eu1_A          151 AGMELTPYSYYDP--ATKG----LNLAGMLECLDKAPEGSVILVHACAHNPTGVDP-THDDWRQVCDVIKRRNHIPFVDM  223 (409)
T ss_dssp             TTCEEEEECCEET--TTTE----ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCeEEEEEeecC--cCCc----CcHHHHHHHHHhCCCCcEEEEECCCCCCCCCCC-CHHHHHHHHHHHHhCCcEEEEec
Confidence            3322111100000  0011    179999999987655678888888899999777 79999999999999999999999


Q ss_pred             cccCCccccc---Ccccc-cCCCCCcE---EEeccccc-CCccchhhh---eeCHH----HHhhcCCCCCCCCCCCCHHH
Q 017259          170 IQSGLARSGR---MLASD-WEEVRPDM---VILGKALG-GGVIPVSAV---LADKE----VMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       170 a~~~~~~~g~---~~~~~-~~~~~~d~---~s~sK~~~-~G~~~~G~~---~~~~~----~~~~~~~~~~~~~~~~~~~~  234 (374)
                      +|+++.+.+.   ..... ..+..+++   .||||.++ +|+ |+||+   +.+++    +.+.+.......+++.+.++
T Consensus       224 ~y~~~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~g~~G~-riG~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~  302 (409)
T 4eu1_A          224 AYQGFATGQLDYDAFVPRHLVDMVPNLIVAQSFSKNFGLYGH-RCGALHISTASAEEAKRLVSQLALLIRPMYNNPPLYG  302 (409)
T ss_dssp             SCTTTTTSCHHHHTHHHHHHHTTSSCCEEEEECTTTSSCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHHH
T ss_pred             cccccccCCcccchHHHHHHHhhCCcEEEEecCcccccCccC-CceEEEEEeCCHHHHHHHHHHHHHHHhhhcCCCChHH
Confidence            9998865541   11211 11333443   38999998 799 99995   55666    55555432233455667888


Q ss_pred             HHHHHHHHHHHh--------hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHHHHH
Q 017259          235 SAVAIASLDVIR--------DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       235 ~~aa~~al~~~~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +.++.++++...        .++.+++++++++++.+.|++..  .|.......+. +.+.|..+       . .+++..
T Consensus       303 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~~~~~~~~~~~~~~~~~~~~-------~-~~~~~~  372 (409)
T 4eu1_A          303 AWVVSSILKDPQLTALWKKELKQMSSRIAEVRKRLVSELKACG--SVHDWSHIERQVGMMAYTGL-------T-REQVEL  372 (409)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--CCSCCHHHHHSCSSEEECCC-------C-HHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CCCCcceecCCceEEEEeCC-------C-HHHHHH
Confidence            888888776321        12455666667777777766542  11101111223 34444222       2 345666


Q ss_pred             HH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++ ++||.+.++.    ||+++. .+++++++++++|+++++
T Consensus       373 ll~~~gv~v~p~~----Ri~~~~-~~~~~i~~~~~~l~~~l~  409 (409)
T 4eu1_A          373 LRSEYHIYMTLNG----RAAVSG-LNSTNVEYVSQAIHNVTK  409 (409)
T ss_dssp             HHHHHCEECCTTC----EEEGGG-CCTTTHHHHHHHHHHHHC
T ss_pred             HHHcCCEEEcCCC----EEEEEe-cCHhhHHHHHHHHHHHhC
Confidence            66 5699999873    888653 566779999999988763

>3nyt_A Aminotransferase WBPE; PLP binding, nucleotide-sugar binding; HET: ULP; 1.30A {Pseudomonas aeruginosa} PDB: 3nys_A* 3nyu_A* 3nu8_A* 3nu7_A* 3nub_A*

Probab=99.92  E-value=1.1e-24  Score=202.67  Aligned_cols=285  Identities=15%  Similarity=0.177  Sum_probs=196.7

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ++.+...++++.++++++.+++++++||++|++.+++.+.    ..+|     |+|++..++|++....+...+....+.
T Consensus        32 ~~~~~~~~l~~~la~~~~~~~~~~~~sGt~al~~al~~~~----~~~g-----d~Vi~~~~~~~~~~~~~~~~G~~~~~~  102 (367)
T 3nyt_A           32 ILGPEVTELEDRLADFVGAKYCISCANGTDALQIVQMALG----VGPG-----DEVITPGFTYVATAETVALLGAKPVYV  102 (367)
T ss_dssp             SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCTHHHHHHHHTTCEEEEE
T ss_pred             cCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHhC----CCCc-----CEEEECCCccHHHHHHHHHcCCEEEEE
Confidence            4577889999999999999999999999999999999874    4566     999999999987665554433222111


Q ss_pred             ccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259           98 RGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA  175 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~  175 (374)
                          +...+    .+ .|+++++++++   +++++++++   |++|...+    +++|.++|++||++||+|++|+ |..
T Consensus       103 ----~~~~~----~~~~d~~~l~~~i~---~~~~~v~~~---~~~G~~~~----~~~i~~la~~~~~~li~D~a~~~g~~  164 (367)
T 3nyt_A          103 ----DIDPR----TYNLDPQLLEAAIT---PRTKAIIPV---SLYGQCAD----FDAINAIASKYGIPVIEDAAQSFGAS  164 (367)
T ss_dssp             ----CBCTT----TCSBCGGGTGGGCC---TTEEEECCB---CGGGCCCC----HHHHHHHHHHTTCCBEEECTTTTTCE
T ss_pred             ----ecCCc----cCCcCHHHHHHhcC---cCCcEEEee---CCccChhh----HHHHHHHHHHcCCEEEEECccccCCe
Confidence                11000    01 17888888885   578888844   45677777    9999999999999999999998 332


Q ss_pred             ccccCcccccCCCCCcEEEec----ccccC-Cccchhhhee-CHHHHhhcCCC------------CCCCCCCCCHHHHHH
Q 017259          176 RSGRMLASDWEEVRPDMVILG----KALGG-GVIPVSAVLA-DKEVMLCIQPG------------EHGSTFGGNPLASAV  237 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s----K~~~~-G~~~~G~~~~-~~~~~~~~~~~------------~~~~~~~~~~~~~~a  237 (374)
                      +.+..     .+...|++++|    |.+++ |.  +|+++. ++++.+.+...            ..+.++..+++.+++
T Consensus       165 ~~~~~-----~~~~~di~~~Sf~~~K~l~~~g~--gg~~~~~~~~l~~~~~~~~~~g~~~~~~~~~~g~~~~~~~~~aa~  237 (367)
T 3nyt_A          165 YKGKR-----SCNLSTVACTSFFPSAPLGCYGD--GGAIFTNDDELATAIRQIARHGQDRRYHHIRVGVNSRLDTLQAAI  237 (367)
T ss_dssp             ETTEE-----TTSSSSEEEEECCTTSSSCCSSC--CEEEEESCHHHHHHHHHHTBTTEEETTEECSCCCBCCCCHHHHHH
T ss_pred             ECCee-----ccCCCCEEEEECCCCCcCCCcCc--eeEEEeCCHHHHHHHHHHHhcCCCcCceeeccCcCCCccHHHHHH
Confidence            22221     11122776555    99987 64  667776 46666555321            113567788888888


Q ss_pred             HHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC
Q 017259          238 AIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH  317 (374)
Q Consensus       238 a~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~  317 (374)
                      +.+.++.+  +++.++.+++.+++.+.|+++...++...........++.+.++      +.+++.+.|.++||.++...
T Consensus       238 ~~~~l~~~--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~l~~~L~~~GI~~~~~~  309 (367)
T 3nyt_A          238 LLPKLEIF--EEEIALRQKVAAEYDLSLKQVGIGTPFIEVNNISVYAQYTVRMD------NRESVQASLKAAGVPTAVHY  309 (367)
T ss_dssp             HHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTCCCCCCCTTEECCCSSEEEECS------SHHHHHHHHHHHTCCCBCSC
T ss_pred             HHHHHHHH--HHHHHHHHHHHHHHHHHhccCCeeccCCCCCCceeeEEEEEEeC------CHHHHHHHHHHCCCceeccC
Confidence            88887755  34567778888888888877632221111111222223333333      47899999999999886432


Q ss_pred             ------------------------CCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          318 ------------------------DTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       318 ------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                                              ...+|+.++...|++|++++++.|++.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lp~~~~~t~~~i~~v~~~~~~~  360 (367)
T 3nyt_A          310 PIPLNKQPAVADEKAKLPVGDKAATQVMSLPMHPYLDTASIKIICAALTNL  360 (367)
T ss_dssp             SSCGGGSGGGCCTTCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHC-
T ss_pred             CCccccChhhhccCCCChHHHHHHhCeEEccCCCCCCHHHHHHHHHHHHHH
Confidence                                    257899999999999999999988643

>2zy4_A L-aspartate beta-decarboxylase; pyridoxal 5'-phosphate, aminotransferase, lyase; HET: PLP; 2.00A {Alcaligenes faecalis subsp} PDB: 2zy3_A* 2zy5_A* 3fdd_A* 2zy2_A*

Probab=99.92  E-value=1.2e-24  Score=212.02  Aligned_cols=312  Identities=12%  Similarity=0.091  Sum_probs=186.8

Q ss_pred             CCCCcHHHHHHHHhc-cc-------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           18 FYNDKFPVFAERLTS-MF-------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~-~~-------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      +..++.+++++++.+ ..       ..+++++|+|+++++..+++++....+..+|     |+|++.+|+|+++...+..
T Consensus       139 g~~~lr~~ia~~~~~~~~~~~~~~~~~~~I~~t~G~~eal~~~~~~l~~~~l~~~G-----d~Vlv~~P~y~~~~~~~~~  213 (546)
T 2zy4_A          139 RMLNISEKIVRQYIIREMGADAIPSESVNLFAVEGGTAAMAYIFESLKLNGLLKAG-----DKVAIGMPVFTPYIEIPEL  213 (546)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCTTSCGGGEEEEEEEHHHHHHHHHHHHHHHTTSSCTT-----CEEEEEESCCHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHHhccCCCCCCCcceEEEECCHHHHHHHHHHHhhhhhcCCCC-----CEEEEeCCCCccHHHHHHH
Confidence            334456565554432 11       2368999999999999999886322235677     9999999999887655322


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH--HhcCCEEEE
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC--SKYNILMIA  167 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~--~~~~i~li~  167 (374)
                      ........  ..+...+.. .. .|+++|++.+.   ++++++++++++||+|.+. +.+.+++|.++|  ++||++||+
T Consensus       214 ~~~g~~~~--~v~~~~~~~-~~-~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~-~~~~l~~l~~~a~~~~~~~~ii~  285 (546)
T 2zy4_A          214 AQYALEEV--AINADPSLN-WQ-YPDSELDKLKD---PAIKIFFCVNPSNPPSVKM-DQRSLERVRNIVAEHRPDLMILT  285 (546)
T ss_dssp             TTSCCEEE--EEECBGGGT-TB-CCHHHHGGGGS---TTEEEEEEESSCSSSCBCC-CHHHHHHHHHHHHHTCTTCEEEE
T ss_pred             cCCCcEEE--EEecCcccC-CC-CCHHHHHHhhC---CCCeEEEEECCCCCCCccC-CHHHHHHHHHHHHhccCCcEEEE
Confidence            11000000  000000000 00 27888877654   5789999888999999877 799999999999  889999999


Q ss_pred             eccccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHH-HHhhcCC------------------------
Q 017259          168 DEIQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKE-VMLCIQP------------------------  221 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~-~~~~~~~------------------------  221 (374)
                      ||+|+++......+.....+....+.||||.++ +|+ |+||++++++ +++.+..                        
T Consensus       286 De~y~~~~~~~~s~~~~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~p~~~~~~l~~~~~~~~~~p~~~  364 (546)
T 2zy4_A          286 DDVYGTFADDFQSLFAICPENTLLVYSFSKYFGATGW-RLGVVAAHQQNVFDLALDKLQESEKVALDHRYRSLLPDVRSL  364 (546)
T ss_dssp             ECTTGGGSTTCCCHHHHCGGGEEEEEESTTTTTCGGG-CEEEEEEESSCHHHHHHHTSCHHHHHHHHHHHTTTCSCGGGC
T ss_pred             eCcchhhcccCcCHHHhCCCCEEEEEeCccccCCCCc-ceEEEEECCHHHHHHHHhhcchhhhHHHHHHhhhccccccch
Confidence            999998754221111111111122459999997 799 9999988764 5555411                        


Q ss_pred             ------------CCCCCCCCCCHHHHHHHH--HHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE
Q 017259          222 ------------GEHGSTFGGNPLASAVAI--ASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN  286 (374)
Q Consensus       222 ------------~~~~~~~~~~~~~~~aa~--~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~  286 (374)
                                  .....+.+.+.+.+.++.  +....+.+ +.+.+++++..+..++.+.+... . ++.......+.++
T Consensus       365 ~~~~~~~~~~~~~~~~~~~~~s~~~Q~a~a~~a~~all~~~~~~~~~~r~~~~~r~~~l~~~L~-~-~~~~~~~~~~~~l  442 (546)
T 2zy4_A          365 KFIDRLVADSRAVALNHTAGLSTPQQVQMALFSLFALMDEADEYKHTLKQLIRRRETTLYRELG-M-PPLRDENAVDYYT  442 (546)
T ss_dssp             CHHHHHHHHTTTTTTGGGCSSCHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHGGGT-S-SCCCCTTBCCSEE
T ss_pred             hhhhhhhhhhHHHHhhccCCCCcHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhcC-C-CcccCCCCeeEEE
Confidence                        001222355667666532  11222322 23344444333333332222221 1 1211122345566


Q ss_pred             EEEeccC-----CC--------c-hhHHHHHHHHHHCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          287 AVEFDKT-----AL--------P-VSAYDICLKMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       287 ~~~~~~~-----~~--------~-~~~~~~~~~l~~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++++.-     ..        + .+...+.+.|.++||.+.|+.     .+++||++. ..+++++++++++|+++++
T Consensus       443 ~~~l~~~~~~~~~~~~~~wl~~~~~~~~~l~~ll~~~gV~v~pG~~F~~~~~~iRis~~-~~~~e~i~~~~~~l~~~l~  520 (546)
T 2zy4_A          443 LIDLQDVTAKLYGEAFSEWAVKQSSTGDMLFRIADETGIVLLPGRGFGSNRPSGRASLA-NLNEYEYAAIGRALRKMAD  520 (546)
T ss_dssp             EEEHHHHHHHHHCHHHHHHHHHHCCHHHHHHHHHHHHSCCCEESSCTTCSSCEEEEESS-SSCHHHHHHHHHHHHHHHH
T ss_pred             EEEHHHhhcccccHHHHHHhhccCCHHHHHHHHHHHCCEEEeCccccCCCCCeEEEEec-cCCHHHHHHHHHHHHHHHH
Confidence            8776420     00        0 023446677788999999863     578999965 3488999999999999887

>1ibj_A CBL, cystathionine beta-lyase; PLP-dependent enzyme, methionine biosynthesis, transsulfurat lyase; HET: PLP; 2.30A {Arabidopsis thaliana} SCOP: c.67.1.3

Probab=99.92  E-value=3.2e-25  Score=211.83  Aligned_cols=289  Identities=11%  Similarity=0.096  Sum_probs=194.0

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+..+.++++++++++++|.+++++++||++|+..++. +     .++|     |+|++..++|++...........   
T Consensus       129 ~~g~~~~~~l~~~la~~~g~~~~i~~~sGt~al~~~l~-~-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~~~---  194 (464)
T 1ibj_A          129 RSGNPTRDALESLLAKLDKADRAFCFTSGMAALSAVTH-L-----IKNG-----EEIVAGDDVYGGSDRLLSQVVPR---  194 (464)
T ss_dssp             TTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHT-T-----SCTT-----CEEEEESSCCHHHHHHHHHTSGG---
T ss_pred             CCCCHHHHHHHHHHHHHhCCCeEEEECCHHHHHHHHHH-H-----hCCC-----CEEEEECCCchhHHHHHHHHHHH---
Confidence            44566788899999999999999999999999887764 2     5677     99999999998764321111000   


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                            ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+.. .
T Consensus       195 ------~G~~v~~v~~~d~~~l~~~i~---~~tk~v~l~~p~NptG~v~~----l~~i~~la~~~gi~livDea~~~g-~  260 (464)
T 1ibj_A          195 ------SGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIMSP-V  260 (464)
T ss_dssp             ------GTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTTCT-T
T ss_pred             ------cCCEEEEeCCCCHHHHHHHhc---cCceEEEEeCCCCCCCEeec----HHHHHHHHHHcCCEEEEECCCccc-c
Confidence                  012345556668999999886   57999999999999999997    999999999999999999999732 1


Q ss_pred             cccCcccccCCCCCcEE--EecccccC--CccchhhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHH
Q 017259          177 SGRMLASDWEEVRPDMV--ILGKALGG--GVIPVSAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLA  251 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~--s~sK~~~~--G~~~~G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~  251 (374)
                      ...  ...   ...|++  |+||.+++  |+ ++|++++++ ++.+.+........+..+++.+.++.++++.+..  ..
T Consensus       261 ~~~--~~~---~~~div~~S~sK~~~g~~Gl-~~G~l~~~~~~l~~~l~~~~~~~g~~~~~~~~~a~~~al~~~~~--r~  332 (464)
T 1ibj_A          261 LSR--PLE---LGADIVMHSATKFIAGHSDV-MAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMAL--RI  332 (464)
T ss_dssp             TCC--GGG---TTCSEEEEETTTTTTCSSCC-CCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHHH--HH
T ss_pred             cCC--hhh---cCCEEEEECCcccccCCCCC-cEEEEEEChHHHHHHHHHHHHhcCCCCCHHHHHHHHhchhhHHH--HH
Confidence            111  111   235655  78899985  77 899999884 7777665432223345578888777777653211  12


Q ss_pred             HHHHHHHHHHHHHHHHHH----------HhCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259          252 ERSAHLGEELRQHLFKIQ----------QQFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-  317 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-  317 (374)
                      ++...+...+.+.+++..          ..+|++.   ....+.+.+++|.+++.   .....+.+.|...||.++.+. 
T Consensus       333 ~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~g~g~~~~~~l~~~---~~~~~~~~~L~~~gi~v~~G~~  409 (464)
T 1ibj_A          333 EKQQENARKIAMYLSSHPRVKKVYYAGLPDHPGHHLHFSQAKGAGSVFSFITGSV---ALSKHLVETTKYFSIAVSFGSV  409 (464)
T ss_dssp             HHHHHHHHHHHHHHHTCTTCCEEECTTSTTSTTHHHHTTTCSCCCSEEEEECSCH---HHHHHHHHHCSSSEECSCCCSS
T ss_pred             HHHHHHHHHHHHHHHhCCCceEEECCCCCCCcchHHHhccCCCCceEEEEEECCH---HHHHHHHHhcCcceEeecCCCC
Confidence            222333333333333210          0111110   01123567888887421   124468888776777665442 


Q ss_pred             --------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 --------------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 --------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                                                .+++|++++.    |++++++++|+++++ .+
T Consensus       410 ~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlsvg~----edi~~li~~L~~al~-~~  462 (464)
T 1ibj_A          410 KSLISMPCFMSHASIPAEVREARGLTEDLVRISAGI----EDVDDLISDLDIAFK-TF  462 (464)
T ss_dssp             SCEEECTTTTTTCSCCSSSSSSSSCCTTCEEEECCS----SCHHHHHHHHHHHHH-SC
T ss_pred             ceeeecccccccccCCHHHHHhcCCCcCeEEEEeCC----CCHHHHHHHHHHHHh-hc
Confidence                                      4689999775    799999999999998 54

>2dkj_A Serine hydroxymethyltransferase; PLP dependent enzyme, structural genomics; HET: PLP; 1.15A {Thermus thermophilus}

Probab=99.92  E-value=4.1e-24  Score=201.39  Aligned_cols=287  Identities=13%  Similarity=0.130  Sum_probs=192.0

Q ss_pred             HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccc--ccccccCCccccccCCCCC
Q 017259           28 ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL--AAISMSCDNEAIRGFGPLL  104 (374)
Q Consensus        28 ~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~--~~~~~~~~~~~~~~~~~~~  104 (374)
                      +++++++|.+.. ++++||++|++.+++++     ..+|     ++|++.+++|++...  ......+.......+ +..
T Consensus        76 ~~la~~~g~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~  144 (407)
T 2dkj_A           76 ERAKALFGAAWANVQPHSGSQANMAVYMAL-----MEPG-----DTLMGMDLAAGGHLTHGSRVNFSGKLYKVVSY-GVR  144 (407)
T ss_dssp             HHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEE-CCC
T ss_pred             HHHHHHhCCCcceEEecchHHHHHHHHHHh-----cCCC-----CEEEEecccccCccchHHHHHhcCceEEEEec-CCC
Confidence            488888887755 66778899999999988     4567     999999999977631  211111110000000 000


Q ss_pred             CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-CcccccCccc
Q 017259          105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-LARSGRMLAS  183 (374)
Q Consensus       105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~~~~g~~~~~  183 (374)
                      .+   ....|++++++++++.  ++++++++.+++  |...+    +++|.++|++||+++|+||+|++ +...+.... 
T Consensus       145 ~~---~~~~d~~~l~~~l~~~--~~~~v~~~~p~~--~~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~~~-  212 (407)
T 2dkj_A          145 PD---TELIDLEEVRRLALEH--RPKVIVAGASAY--PRFWD----FKAFREIADEVGAYLVVDMAHFAGLVAAGLHPN-  212 (407)
T ss_dssp             TT---TSSCCHHHHHHHHHHH--CCSEEEECCSSC--CSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTCSCC-
T ss_pred             cc---cCccCHHHHHHHHhhc--CCeEEEEecccc--CCCCC----HHHHHHHHHHcCCEEEEEccccccccccCccCC-
Confidence            00   0113799999999743  567777743333  25555    99999999999999999999984 433332211 


Q ss_pred             ccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHH
Q 017259          184 DWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAERSAH  256 (374)
Q Consensus       184 ~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~  256 (374)
                       ... .+|++  |+||+++ |. ++|+++++ +++.+.+.... .+.+.+.+...++++.++++.+..   +++.+++++
T Consensus       213 -~~~-~~di~~~s~sK~l~-g~-~~G~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~al~~~~~~~~~~~~~~~~~  288 (407)
T 2dkj_A          213 -PLP-YAHVVTSTTHKTLR-GP-RGGLILSNDPELGKRIDKLIFPGIQGGPLEHVIAGKAVAFFEALQPEFKEYSRLVVE  288 (407)
T ss_dssp             -CTT-TCSEEEEESSGGGC-CC-SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHH
T ss_pred             -ccc-cccEEEEeccccCC-CC-CceEEEECCHHHHHHHHhhhcccccCCCcHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence             111 25666  8899887 45 67999998 78877765432 233344566666677777776533   356677777


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----------CCEEEEecC
Q 017259          257 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------DTIVRLTPP  326 (374)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------~~~lRi~~~  326 (374)
                      +.+++.+.|++..  + .+... ++.+.++++.++...  .+..++.+.|.++||.++++.          ++++|++++
T Consensus       289 ~~~~l~~~L~~~g--~-~~~~~-~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~iRis~~  362 (407)
T 2dkj_A          289 NAKRLAEELARRG--Y-RIVTG-GTDNHLFLVDLRPKG--LTGKEAEERLDAVGITVNKNAIPFDPKPPRVTSGIRIGTP  362 (407)
T ss_dssp             HHHHHHHHHHHTT--C-EEGGG-SCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEEEECH
T ss_pred             HHHHHHHHHHhCC--c-eeecC-CCCceEEEEECcccC--CCHHHHHHHHHHcCceecCCcCccccccccCCCceeeecc
Confidence            7788877777651  2 11111 245788888886410  157789999999999998742          578999976


Q ss_pred             C----CCCHHHHHHHHHHHHHHHhcc
Q 017259          327 L----SISSNELQEGSKALHDVLELD  348 (374)
Q Consensus       327 ~----~~~~e~i~~~~~~l~~~~~~~  348 (374)
                      .    ..+++++++++++|+++++ +
T Consensus       363 ~~~~~~~~~~~i~~~~~~l~~~~~-~  387 (407)
T 2dkj_A          363 AITTRGFTPEEMPLVAELIDRALL-E  387 (407)
T ss_dssp             HHHHTTCCGGGHHHHHHHHHHHHH-H
T ss_pred             cccccCCCHHHHHHHHHHHHHHHh-c
Confidence            5    3799999999999999998 5

>1qgn_A Protein (cystathionine gamma-synthase); methionine biosynthesis, pyridoxal 5'-phosphate, gamma-famil; HET: PLP; 2.90A {Nicotiana tabacum} SCOP: c.67.1.3 PDB: 1i41_A* 1i48_A* 1i43_A*

Probab=99.92  E-value=3.3e-24  Score=203.42  Aligned_cols=291  Identities=16%  Similarity=0.159  Sum_probs=195.5

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.++.+.++..++++++|++++|.+..++++||++|++.+++.+     .++|     |+|++.++.|++.........
T Consensus       105 ~~~y~r~~~~~~~~l~~~lA~l~g~~~~v~~~sG~~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~  174 (445)
T 1qgn_A          105 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLAL-----VPAG-----GHIVTTTDCYRKTRIFIETIL  174 (445)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----SCSS-----CEEEEETTSCHHHHHHHHHTG
T ss_pred             CccccCCCChHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchhHHHHHHHHH
Confidence            344555678889999999999998888888889999999999977     4567     999999999876443211000


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcE-EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQI-AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~-~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ..         ....+..++.+|+++++++++.   ++ +++++++++|++|.+.+    +++|.++|++||+++|+|++
T Consensus       175 ~~---------~G~~v~~v~~~d~~~l~~ai~~---~tv~lV~le~p~NptG~v~d----l~~I~~la~~~g~~livD~a  238 (445)
T 1qgn_A          175 PK---------MGITATVIDPADVGALELALNQ---KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGT  238 (445)
T ss_dssp             GG---------GTCEEEEECSSCHHHHHHHHHH---SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECT
T ss_pred             HH---------cCCEEEEeCCCCHHHHHHHhcc---CCCCEEEEeCCCCCCCcccC----HHHHHHHHHHcCCEEEEECC
Confidence            00         1133555666799999999983   56 99999999999999998    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      |+.... .     ......+|++  |++|.++| |.+++|++++++++++.+...........+++.+..+..+++.+. 
T Consensus       239 ~~~~~~-~-----~~~~~g~Div~~S~sK~~gg~gd~~~G~l~~~~~l~~~l~~~~~~~g~~~~~~~a~~~~~~l~~l~-  311 (445)
T 1qgn_A          239 FATPLN-Q-----KALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH-  311 (445)
T ss_dssp             TTCTTT-C-----CTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH-
T ss_pred             Cccccc-C-----CccccCCEEEEECCcccccccccceEEEEEECHHHHHHHHHHHHHhCCCCCHHHHHHHHHhHHHHH-
Confidence            973311 1     1223456776  57799985 423689999998888777542211122345665555555554332 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-----------------EEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-----------------VRGRGLFNAVEFDKTALPVSAYDICLKMKERG  310 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----------------~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G  310 (374)
                       ...++..++.+++.+.|++.    |.+...                 .++.+.+++|.++...  .....+.+.|...+
T Consensus       312 -~r~~~~~~~a~~l~~~L~~~----p~v~~v~~p~l~~~p~~~~~~~~~~g~g~ivsf~l~~~~--~~~~~~l~~l~~~~  384 (445)
T 1qgn_A          312 -LRVQQQNSTALRMAEILEAH----PKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPY  384 (445)
T ss_dssp             -HHHHHHHHHHHHHHHHHHTC----TTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSE
T ss_pred             -HHHHHHHHHHHHHHHHHhcC----CCceEEECCCCCCCchHHHHHHhccCCCcEEEEEECCCH--HHHHHHHHhCCCce
Confidence             12344445566666666543    211010                 1236788899886531  13455666654334


Q ss_pred             eEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          311 ILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       311 i~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.++.+                           ..+.+|++++    .||++.+++.|+++++
T Consensus       385 i~~s~G~~~sl~~~p~~~~h~~~~~~~~~~~g~~~~~iRlSvG----~Edid~li~~L~~al~  443 (445)
T 1qgn_A          385 IAPSFGGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFG----VEDFDDLKADILQALD  443 (445)
T ss_dssp             ECSCCCSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECC----SSCHHHHHHHHHHHHH
T ss_pred             EeccCCCCceeeecccccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHHHHh
Confidence            432211                           1479999955    4689999999999886

>3a9z_A Selenocysteine lyase; PLP, cytoplasm, pyridoxal phosphate, transferase; HET: PLP SLP; 1.55A {Rattus norvegicus} PDB: 3a9x_A* 3a9y_A* 3gzd_A* 3gzc_A* 2hdy_A*

Probab=99.92  E-value=7.6e-24  Score=201.30  Aligned_cols=301  Identities=13%  Similarity=0.069  Sum_probs=184.7

Q ss_pred             cHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           22 KFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ...++++++++++|.  +++++++|+++|++.+++.+......   ++|     |+|++..|+|+++..........+..
T Consensus        62 ~~~~l~~~la~~~g~~~~~v~~~~g~t~a~~~~~~~~~~~~~~~~~~~g-----d~vl~~~p~y~~~~~i~~~~~~h~s~  136 (432)
T 3a9z_A           62 IINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQTLQG-----RTVDQISPEEGTRPHFITCTVEHDSI  136 (432)
T ss_dssp             HHHHHHHHHHHHHTCCGGGEEEESCHHHHHHHHHHHHHHHHHHHHHHC-----------------CCCEEEEETTCCHHH
T ss_pred             HHHHHHHHHHHHcCCCcCeEEEeCChHHHHHHHHHHHHhhhhhccccCC-----ccccccccccccCCeEEEecCcchhH
Confidence            356899999998875  48999999999999999988421000   356     99999999998752111111000000


Q ss_pred             cccC----CCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC----
Q 017259           97 IRGF----GPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN----  162 (374)
Q Consensus        97 ~~~~----~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~----  162 (374)
                      ...+    ......+..++.      .|+++|+++++   ++++++++++++|++|.+.+    +++|.++|+++|    
T Consensus       137 ~~~~~~~~~~~g~~v~~v~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~l~~~~~~~~~  209 (432)
T 3a9z_A          137 RLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVR---PTTCLVTIMLANNETGVIMP----ISEISRRIKALNQIRA  209 (432)
T ss_dssp             HHHHHHHHHTTSCEEEEECCCTTTSSCCHHHHHHTCC---TTEEEEECCSBCTTTCBBCC----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCcEEEEEecCcccCCcCHHHHHHhcc---CCceEEEEECcccCcccccC----HHHHHHHHHhcCcccc
Confidence            0000    000011222222      27889988876   57999999999999999998    999999999999    


Q ss_pred             ------CEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHH-HhhcCCCC-------CCC
Q 017259          163 ------ILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV-MLCIQPGE-------HGS  226 (374)
Q Consensus       163 ------i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~-~~~~~~~~-------~~~  226 (374)
                            ++||+||+|+.. ..  .+...  ...+|++  |++|.+  |. ++|++++++++ ...+.+..       ...
T Consensus       210 ~~~~~~~~livDea~~~~-~~--~~~~~--~~~~d~~~~s~~K~~--g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  281 (432)
T 3a9z_A          210 ASGLPRVLVHTDAAQALG-KR--RVDVE--DLGVDFLTIVGHKFY--GP-RIGALYVRGVGKLTPLYPMLFGGGQERNFR  281 (432)
T ss_dssp             HHTCCCCEEEEECTTTTT-TS--CCCHH--HHCCSEEEEEGGGTT--CC-SCEEEEETTBTTTBCCCCSCCSSCGGGGTS
T ss_pred             cccCCceEEEEEchhhhC-Cc--ccChh--hcCCCEEEEehhHhc--CC-cceEEEEccccccCCcCceeecCCcccccc
Confidence                  999999999632 21  11111  1245655  668976  36 78999988765 33444321       122


Q ss_pred             CCCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCce--ee---EEEEeeeEEEEeccCCCchhH
Q 017259          227 TFGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYV--KE---VRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~~---~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      .++.+.++++++.++++.+.+  +++.++++++++++.+.|+++...  .+.  ..   ....+.+++|.+++..  .+.
T Consensus       282 ~~~~~~~~~~a~~aal~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~--~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~  357 (432)
T 3a9z_A          282 PGTENTPMIAGLGKAADLVSENCETYEAHMRDIRDYLEERLEAEFGK--RIHLNSRFPGVERLPNTCNFSIQGSQ--LRG  357 (432)
T ss_dssp             CSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGG--GEEESSCCTTCCBCTTEEEEEECSTT--CCH
T ss_pred             CCCcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccCC--cEEEeCCCCcccCCCCEEEEEeCCCC--CcH
Confidence            356688888888888887654  356777888888888888775321  011  00   1123456667675421  034


Q ss_pred             HHHHHHHHHCCeEeccC------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          300 YDICLKMKERGILAKPT------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++.+.+  .|+.++.+                        ..+++||+++..++++|+++++++|+++++ ++
T Consensus       358 ~~~~~~l--~~i~~~~G~~~~~~~~~~~~~~l~~~g~~~~~~~~~iRis~~~~~t~eei~~~~~~l~~~~~-~~  428 (432)
T 3a9z_A          358 YMVLAQC--QTLLASVGASCHSDHEDRPSPVLLSCGIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVN-QL  428 (432)
T ss_dssp             HHHHHHC--SSEECBSSCGGGGGGTTSCCHHHHHTTCCHHHHTTEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHh--cCeEEeccccccCCCCCCccHHHHhcCCCccccCceEEEEcCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            5566554  24443321                        137999999988899999999999999987 54

>3acz_A Methionine gamma-lyase; L-methionine; HET: LLP; 1.97A {Entamoeba histolytica} PDB: 3aej_A* 3ael_A* 3aem_A* 3aen_A* 3aeo_A* 3aep_A*

Probab=99.92  E-value=2.9e-24  Score=201.40  Aligned_cols=289  Identities=13%  Similarity=0.115  Sum_probs=196.2

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.++++...+++++|++++|.+++++++||++|++.+++.+     .++|     |+|++..++|++..........
T Consensus        51 ~~y~~~~~~~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~~~-----~~~g-----d~vl~~~~~y~~~~~~~~~~~~  120 (389)
T 3acz_A           51 HIYSRLGNPTVEQFEEMVCSIEGAAGSAAFGSGMGAISSSTLAF-----LQKG-----DHLIAGDTLYGCTVSLFTHWLP  120 (389)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHTTT-----CCTT-----CEEEEESSCCHHHHHHHHHHHH
T ss_pred             cccCCCCChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence            44455678889999999999999889999999999999998876     4567     9999999999875443211000


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+..++..|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|+
T Consensus       121 ~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~~~~~nptG~~~~----l~~i~~~~~~~~~~livD~~~~  184 (389)
T 3acz_A          121 R---------FGIEVDLIDTSDVEKVKAAWK---PNTKMVYLESPANPTCKVSD----IKGIAVVCHERGARLVVDATFT  184 (389)
T ss_dssp             H---------TTCEEEEECTTCHHHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECTTT
T ss_pred             H---------cCCEEEEECCCCHHHHHHhcC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCCc
Confidence            0         012345556678999998887   57999999999999999998    9999999999999999999998


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeCH-HHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLADK-EVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++.. +.++     +..+|++  |++|.+++ |. |+ |++++++ ++.+.+...........+++.+.++.+.++.+. 
T Consensus       185 ~~~~-~~~~-----~~~~di~~~S~sK~~~~~~~-~~~G~v~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~-  256 (389)
T 3acz_A          185 SPCF-LKPL-----ELGADIALHSVSKYINGHGD-VIGGVSSAKTAEDIATIKFYRKDAGSLMAPMDAFLCARGMKTLP-  256 (389)
T ss_dssp             CTTT-CCGG-----GTTCSEEEEETTTTTTCSSC-CCCEEEEESSHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH-
T ss_pred             cccc-cCcc-----ccCCeEEEECChhhccCCCC-ceeEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHcCccHHH-
Confidence            5421 2221     2346766  78899996 56 87 8898888 887777643221233456777776766665431 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHH----hCCCc-----e----eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQ----QFPNY-----V----KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~----~~~~~-----~----~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                       ...++..++...+.+.+++...    .+|..     .    ...++.+.++.|.++.      ..++.+.|.+.|+.+.
T Consensus       257 -~r~~~~~~~~~~l~~~l~~~~~v~~~~~~~L~~~~~~~~~~~~~~g~g~~~~~~l~~------~~~~~~~l~~~~i~~~  329 (389)
T 3acz_A          257 -IRMQIHMENGLKVAKFLEQHEKIVKVNHPGLESFPGHDIAKKQMTGYGSTFLFEMKS------FEAAKKLMEHLKVCTL  329 (389)
T ss_dssp             -HHHHHHHHHHHHHHHHHHHCTTEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEESS------HHHHHHHHTTCSSSEE
T ss_pred             -HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCCeEEEEEECC------HHHHHHHHHhCCCcEE
Confidence             2344555566666666655310    00000     0    0012347778887752      3456666667787664


Q ss_pred             cC------------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PT------------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~------------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..                              .++.+|++++..    +.+++++.|.++++
T Consensus       330 ~~s~G~~~sl~~~~~~~~~~~~~~~~~~~~g~~~~~iRlsvg~~----~~~~li~~l~~al~  387 (389)
T 3acz_A          330 AVSLGCVDTLIEHPASMTHAAVPENIMRKQGITPELVRISVGIE----NVDDIIADLKQALE  387 (389)
T ss_dssp             BSCCCCSSCEEECTTTTTTSSSCHHHHHHHTCCTTEEEEECCSS----CHHHHHHHHHHHHT
T ss_pred             CcCCCCcccEeeCCcccccccCCHHHHHhcCCCcCeEEEEeccC----CHHHHHHHHHHHHh
Confidence            41                              147999997765    45555666666655

>1wyu_B Glycine dehydrogenase subunit 2 (P-protein); alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_B* 1wyv_B*

Probab=99.92  E-value=1.1e-23  Score=202.40  Aligned_cols=292  Identities=17%  Similarity=0.162  Sum_probs=198.1

Q ss_pred             cHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           22 KFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ...++++++++++|.+.. ++++||++|+..++++++.+. .++|...++++|+++.+.| +.+.......+-       
T Consensus       108 l~~~l~~~la~~~g~~~~~~~~~ggt~a~~~al~~~~~~~-~~~Gd~~~r~~Vlv~~~~h-~~~~~~~~~~G~-------  178 (474)
T 1wyu_B          108 LMWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH-EDRGEGRTRRVVLVPDSAH-GSNPATASMAGY-------  178 (474)
T ss_dssp             HHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH-HHTTCTTTCCEEEEETTSC-THHHHHHHHTTC-------
T ss_pred             HHHHHHHHHHHHHCCCceeecChHHHHHHHHHHHHHHHHH-HhcCCccCCCEEEEeCCcC-hhhHHHHHHCCC-------
Confidence            467789999998888754 578999999999988886542 3455102335899988775 554444333321       


Q ss_pred             CCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259          101 GPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus       101 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                           .+..++.+     |+++|+++++   +++++++++++ |++|.+ .+    +++|.++|++||+++|+||+|+..
T Consensus       179 -----~vv~v~~~~~~~~d~~~L~~~i~---~~t~~v~~~~p-n~~G~~~~~----l~~i~~l~~~~g~~li~Dea~~~~  245 (474)
T 1wyu_B          179 -----QVREIPSGPEGEVDLEALKRELG---PHVAALMLTNP-NTLGLFERR----ILEISRLCKEAGVQLYYDGANLNA  245 (474)
T ss_dssp             -----EEEEECBCTTSSBCHHHHHHHCS---TTEEEEEECSS-CTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGG
T ss_pred             -----EEEEecCCCCCCcCHHHHHHhhC---CCceEEEEECC-CCCcccCCC----HHHHHHHHHHcCCEEEEeCchhhh
Confidence                 12222222     8999999886   57899999885 568876 45    999999999999999999999743


Q ss_pred             cccccCcccccCCCCCcEEEe--cccccC-----CccchhhheeCHHHHhhcCCC-------------------CCCCCC
Q 017259          175 ARSGRMLASDWEEVRPDMVIL--GKALGG-----GVIPVSAVLADKEVMLCIQPG-------------------EHGSTF  228 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~--sK~~~~-----G~~~~G~~~~~~~~~~~~~~~-------------------~~~~~~  228 (374)
                      . .|.. ....  ..+|++++  +|++++     |. ++|++++++++++.+...                   ....++
T Consensus       246 ~-~g~~-~~~~--~g~di~~~s~~K~~~~p~g~gG~-~~G~~~~~~~l~~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~  320 (474)
T 1wyu_B          246 I-MGWA-RPGD--MGFDVVHLNLHKTFTVPHGGGGP-GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSF  320 (474)
T ss_dssp             T-TTTC-CHHH--HTCSEEECCTTTTTCCCCTTSCC-CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSST
T ss_pred             h-ccCC-Cccc--CCCcEEEEeCccccccCCCCCCC-CeEEEEEcHHHHHhCCCCeeeccCCeeEecccCcccCcccccC
Confidence            2 2211 1111  24677755  798862     46 899999999887776520                   011233


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      +.+.+++.++.+.++.+..+.+   .++.+++.+++.+.|++.  .+ .+... ......+++.++...   +..++.+.
T Consensus       321 ~~~~~~~~aa~~~l~~~g~~~l~~~~~~~~~~~~~l~~~L~~~--g~-~~~~~-~~~~~~~~~~~~~~~---~~~~l~~~  393 (474)
T 1wyu_B          321 YGNFLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEK--GY-RVPYD-GPSMHEFVAQPPEGF---RALDLAKG  393 (474)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT--TC-BCSSC-SSCCSCEEEBCSTTC---CHHHHHHH
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--Cc-EecCC-CCcceEEEEEcCCCC---CHHHHHHH
Confidence            5678888888888876544433   667777888888888765  22 12111 011111444443222   67899999


Q ss_pred             HHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhcc
Q 017259          306 MKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLELD  348 (374)
Q Consensus       306 l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~  348 (374)
                      |.++||.+...     ..+++||+++...+++++++++++|+++++ +
T Consensus       394 L~~~Gi~~~~~~~~~~~~~~lRis~~~~~t~e~id~~~~~L~~~~~-~  440 (474)
T 1wyu_B          394 LLELGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK-K  440 (474)
T ss_dssp             HHHTTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT-S
T ss_pred             HHHCCccccccccccccCCEEEEEeecCCCHHHHHHHHHHHHHHHH-h
Confidence            99999986321     257899999888899999999999999998 5

>1n8p_A Cystathionine gamma-lyase; three open alpha/beta structures; HET: PLP; 2.60A {Saccharomyces cerevisiae} SCOP: c.67.1.3

Probab=99.92  E-value=1.7e-24  Score=203.14  Aligned_cols=294  Identities=14%  Similarity=0.127  Sum_probs=194.7

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..+.+..+..++++++++++++.+++++++||++|++.+++ +     .++|     |+|++..+.|++..........
T Consensus        47 ~~~~~~~~~~~~~lr~~la~~~g~~~~i~~~sGt~a~~~al~-~-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~  115 (393)
T 1n8p_A           47 YEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATILQ-S-----LPQG-----SHAVSIGDVYGGTHRYFTKVAN  115 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHH-T-----SCSS-----CEEEEESSCCHHHHHHHHHTST
T ss_pred             cceecCCChhHHHHHHHHHHHhCCCcEEEECChHHHHHHHHH-H-----cCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence            344456677889999999999988888888999999999998 5     4567     9999999998764332110100


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc----CCEEEEe
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMIAD  168 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~----~i~li~D  168 (374)
                               .....+..++.+| ++++++++   ++++++++++++|++|.+.+    +++|.++|++|    |+++|+|
T Consensus       116 ---------~~G~~v~~v~~~d-~~l~~~i~---~~t~lv~~~~~~nptG~~~~----l~~i~~la~~~~~~~~~~livD  178 (393)
T 1n8p_A          116 ---------AHGVETSFTNDLL-NDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVD  178 (393)
T ss_dssp             ---------TTCSCCEEESSHH-HHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEE
T ss_pred             ---------HcCcEEEEeCCCh-HHHHHhcc---cCceEEEEECCCCCcceecC----HHHHHHHHHHhCCCCCCEEEEe
Confidence                     1113455666667 88888876   57999999999999999998    99999999999    9999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEE--EecccccC-Cccch-hhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPV-SAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~-G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      |+|+++.. ....     ....|++  |++|.+++ |+ |+ |+++++ +++.+.+...........+++.+.++..+++
T Consensus       179 ~a~~~~~~-~~~~-----~~~~di~~~S~sK~~g~~G~-rigG~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~l~  251 (393)
T 1n8p_A          179 NTFLSPYI-SNPL-----NFGADIVVHSATKYINGHSD-VVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLK  251 (393)
T ss_dssp             CTTTHHHH-CCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHT
T ss_pred             CCcccccc-CCHH-----HcCCeEEEEECcccccCCCC-ceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHhccc
Confidence            99985532 1221     1235655  78899995 77 88 788874 7777776543221122345666666655555


Q ss_pred             HHhhhcHHHHHHHHHHHHHHHHHHHHH-----hCCCcee---------eEEE-E-eeeEEEEeccCCCchhHHHHHHHHH
Q 017259          244 VIRDEKLAERSAHLGEELRQHLFKIQQ-----QFPNYVK---------EVRG-R-GLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       244 ~~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~---------~~~~-~-g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .+.  ...++..++.+++.+.|++...     .+|....         ..++ . +.+++|.++..  ......+.+.|.
T Consensus       252 ~~~--~~~~~~~~~~~~l~~~L~~~~~~l~~v~~p~l~~~~~~~~~~~~~~~~~~~~i~~~~l~~~--~~~~~~~l~~l~  327 (393)
T 1n8p_A          252 TLH--LRVRQAALSANKIAEFLAADKENVVAVNYPGLKTHPNYDVVLKQHRDALGGGMISFRIKGG--AEAASKFASSTR  327 (393)
T ss_dssp             THH--HHHHHHHHHHHHHHHHHTSCTTTEEEEECTTSTTSTTHHHHHHHSGGGCCCSEEEEEESSC--HHHHHHHHHHCS
T ss_pred             hHH--HHHHHHHHHHHHHHHHHHhCCCCceEEECCCCCCCccHHHHHhhCCCCCCccEEEEEeCCc--HHHHHHHHhhCC
Confidence            332  2234444555555555543211     0111000         0012 4 77888888642  114555666654


Q ss_pred             HCCeEec----------c---C--------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          308 ERGILAK----------P---T--------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       308 ~~Gi~v~----------~---~--------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ..++.++          |   .              ..+.+|++++...++++++.+.++|+++.
T Consensus       328 ~~~~~~s~G~~~s~~~~p~~~~h~~~~~~~~~~~g~~~~~iRlS~g~~~~~~~i~~l~~al~~~~  392 (393)
T 1n8p_A          328 LFTLAESLGGIESLLEVPAVMTHGGIPKEAREASGVFDDLVRISVGIEDTDDLLEDIKQALKQAT  392 (393)
T ss_dssp             SSEECSCCCCSSCEEECTTTTTSCSSCTTTTTTTSCCTTEEEEECCSSCHHHHHHHHHHHHHHHH
T ss_pred             cceECCCCCCCcceeeccccccccccCHHHHHhcCCCCCeEEEEEccCCHHHHHHHHHHHHHHhh
Confidence            3343321          1   1              14799999999999999999999887653

>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism; HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2 PDB: 2c44_A 2v1p_A* 2v0y_A*

Probab=99.92  E-value=1.6e-23  Score=201.07  Aligned_cols=320  Identities=17%  Similarity=0.123  Sum_probs=188.9

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      ..+...+++++++++++.+++++|+||++|++.++++++.+.+..+|.+ ++|+|++.  .||+.+..............
T Consensus        72 ~~~~~~~l~~~la~~~~~~~v~~t~~gt~A~~~al~~~~~~~~~~~G~~-~~d~Ii~~--~~h~~t~~~~~~~~~~~~~~  148 (467)
T 2oqx_A           72 GSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGLD-RSKMVAFS--NYFFDTTQGHSQINGCTVRN  148 (467)
T ss_dssp             SCHHHHHHHHHHHHHHCCSEEEEEC--CCSHHHHHHHHHHHHHHHHCCC-TTTCEEEE--SSCCHHHHHHHHHTTCEEEE
T ss_pred             cCchhHHHHHHHHHHhCcCcEEEcCCcHHHHHHHHHHHhccccccCCCC-ccceEEec--ccccccchhhhhccCcceee
Confidence            3556788999999999999999999999999999999964310001311 11556665  46654321111111001111


Q ss_pred             cCCCCCCCc-eeccC---CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLLPGH-LKVDF---GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~~~~-~~~~~---~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      +..+...+. ...++   .|+++|++++++++ ++++++++++++|++|+..++.+++++|.++|++||++||+|++|+.
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~Le~~i~~~~~~~~~~vi~~~~~n~~gG~~~~~~~l~~i~~la~~~gi~li~D~a~~~  228 (467)
T 2oqx_A          149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA  228 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             ccccccccCCCCCCccCCcCHHHHHHHHHhcCCCceeEEEEeccccCCCCccCCHHHHHHHHHHHHHcCCEEEEEchhhh
Confidence            111100000 00111   28999999998643 47899999999888755666899999999999999999999966542


Q ss_pred             ----------CcccccCcc-cc--cCCCCCcE--EEecccccCCccchhhheeCHH----HHhhcCCC----CCCCCCCC
Q 017259          174 ----------LARSGRMLA-SD--WEEVRPDM--VILGKALGGGVIPVSAVLADKE----VMLCIQPG----EHGSTFGG  230 (374)
Q Consensus       174 ----------~~~~g~~~~-~~--~~~~~~d~--~s~sK~~~~G~~~~G~~~~~~~----~~~~~~~~----~~~~~~~~  230 (374)
                                .++.|.... +.  .. ..+|+  .++||+++.+.  .|+++++++    .+..++..    ....+++.
T Consensus       229 e~~~~~~~~~~~~~g~~~~~~~~~~~-~~~d~~~~s~sK~~g~~~--Gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  305 (467)
T 2oqx_A          229 ENAYFIKQREAEYKDWTIEQITRETY-KYADMLAMSAKKDAMVPM--GGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGG  305 (467)
T ss_dssp             HHHHHHHHHCGGGTTSCHHHHHHHHG-GGCSEEEEESSSTTCCSS--CEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCC
T ss_pred             hhhhhcccccccccCccHHHHhhhhh-ccCCeEEEecccccCCCC--ceEEEecChhHHHHHHHHHHhhhccCCcccccc
Confidence                      122232111 00  00 11343  47789886322  245666655    33333221    11112222


Q ss_pred             -CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc---CCC-ch-hHHHHHH
Q 017259          231 -NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK---TAL-PV-SAYDICL  304 (374)
Q Consensus       231 -~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~---~~~-~~-~~~~~~~  304 (374)
                       +..++++...+++...+++..++.+++.+++.+.|++.  .++ +.   +..+.++++.++.   ... .. +..++++
T Consensus       306 ~~~~~~~al~~~l~~~~~~~~~~~~~~~~~~l~~~L~~~--~~~-~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  379 (467)
T 2oqx_A          306 LEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEI--GVV-CQ---QAGGHAAFVDAGKLLPHIPADQFPAQALAC  379 (467)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHT--TCC-EE---EECSSCEEEEHHHHSTTSCGGGCHHHHHHH
T ss_pred             hhhhHHHHHHHhhHhhhhHHHHHHHHHHHHHHHHHHHHC--CCe-ee---cCCceEEEEechhhcccCCcccccHHHHHH
Confidence             22222222222232222234566677788888888765  231 22   3456777877742   110 01 1556789


Q ss_pred             HH-HHCCeEeccCC-----------------CCEEEEecCCC-CCHHHHHHHHHHHHHHHhccCCc
Q 017259          305 KM-KERGILAKPTH-----------------DTIVRLTPPLS-ISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       305 ~l-~~~Gi~v~~~~-----------------~~~lRi~~~~~-~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .| .++||.+.+.+                 .+++|++++.. ++++++++++++|+++++ +...
T Consensus       380 ~L~~~~gv~~~~~~~~~~~~~~~~g~~~~~~~~~iRl~~~~~~~t~e~i~~~~~~l~~~l~-~~~~  444 (467)
T 2oqx_A          380 ELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE-NAAN  444 (467)
T ss_dssp             HHHHHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTSCHHHHHHHHHHHHHHHH-SGGG
T ss_pred             HHHHhcCceecccccccccccccccccccCccCeEEEEecCCCCCHHHHHHHHHHHHHHHh-hhhh
Confidence            98 88999998732                 27999999988 999999999999999998 6543

>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04; 1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A 1o61_A*

Probab=99.91  E-value=4.8e-23  Score=193.53  Aligned_cols=294  Identities=14%  Similarity=0.178  Sum_probs=195.7

Q ss_pred             CcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           21 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      +...++++.++++++.+++++++||++|++.+++++.    ..+|     |+|++..++|++....+...+......   
T Consensus        32 ~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~l~----~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~v---   99 (394)
T 1o69_A           32 EFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG----VKQD-----DIVLASSFTFIASVAPICYLKAKPVFI---   99 (394)
T ss_dssp             HHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCGGGTHHHHHTTCEEEEE---
T ss_pred             hHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCC-----CEEEECCCccHHHHHHHHHcCCEEEEE---
Confidence            4588999999999999999999999999999998873    4556     999999999988766554433221111   


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGR  179 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~  179 (374)
                       +...+.    ..|++++++++++.+++++++++++   ++|...+    +++|.++|++||+++|+||+|+ |+.+.+.
T Consensus       100 -~~~~~~----~~d~~~l~~~i~~~~~~~~~v~~~~---~~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~  167 (394)
T 1o69_A          100 -DCDETY----NIDVDLLKLAIKECEKKPKALILTH---LYGNAAK----MDEIVEICKENDIVLIEDAAEALGSFYKNK  167 (394)
T ss_dssp             -CBCTTS----SBCHHHHHHHHHHCSSCCCEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEETTE
T ss_pred             -EeCCCC----CcCHHHHHHHHhcccCCceEEEEEC---CCCChhh----HHHHHHHHHHcCCEEEEECcCcccceeCCc
Confidence             110000    0279999999985433578888876   4576666    9999999999999999999998 6544333


Q ss_pred             CcccccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCCC--------------CCCCCCCHHHHHHHHHHH
Q 017259          180 MLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH--------------GSTFGGNPLASAVAIASL  242 (374)
Q Consensus       180 ~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~--------------~~~~~~~~~~~~aa~~al  242 (374)
                      ... . + ...++.++|  |.++ |. ++|+++++ +++.+.+.....              +..+..+.+..++++..+
T Consensus       168 ~~~-~-~-~~~~~~s~s~~K~l~-~~-~~G~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l  242 (394)
T 1o69_A          168 ALG-T-F-GEFGVYSYNGNKIIT-TS-GGGMLIGKNKEKIEKARFYSTQARENCLHYEHLDYGYNYRLSNVLGAIGVAQM  242 (394)
T ss_dssp             ETT-S-S-SSEEEEECCTTSSSC-CS-SCEEEEESCHHHHHHHHHHTBTCCCSSSSCCCSSCCCBCBCCHHHHHHHHHHH
T ss_pred             ccc-c-c-cCcEEEEEeCCccCC-CC-CceEEEECCHHHHHHHHHHHHhccccCccccccccCcccCcCHHHHHHHHHHH
Confidence            211 1 1 135777885  6665 45 78999985 777666542111              111124556665555555


Q ss_pred             HHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC------------------CchhHHHHHH
Q 017259          243 DVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA------------------LPVSAYDICL  304 (374)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~------------------~~~~~~~~~~  304 (374)
                      +.++  +..++.+++.+++.+.|+++ ..+.+......+...++++.++...                  .+.+..++.+
T Consensus       243 ~~l~--~~~~~~~~~~~~l~~~L~~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~  319 (394)
T 1o69_A          243 EVLE--QRVLKKREIYEWYKEFLGEY-FSFLDELENSRSNRWLSTALINFDKNELNACQKDINISQKNITLHPKISKLIE  319 (394)
T ss_dssp             TTHH--HHHHHHHHHHHHHHHHHTTT-EECCCCCTTEECCCSSEEEEESCCGGGSCCCCEEEECCCCCCCCCHHHHHHHH
T ss_pred             HHHH--HHHHHHHHHHHHHHHHhccc-ccccCCCCCCcceeEEEEEEecchhhccccccccccccccccccccCHHHHHH
Confidence            4432  35677778888888877665 2221110001111224566665320                  0125778999


Q ss_pred             HHHHCCeEeccCCC------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILAKPTHD------------------------TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v~~~~~------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|.++||.++++..                        ..+|+..+..+|++|+++++++|+++++
T Consensus       320 ~L~~~gI~v~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~edi~~~~~~l~~~~~  385 (394)
T 1o69_A          320 DLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISKLILKSIK  385 (394)
T ss_dssp             HHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHC
T ss_pred             HHHHcCCcccccCCccccchhhhccCCCCChHHHHHhcCeEEccCCCCCCHHHHHHHHHHHHHHHh
Confidence            99999999987520                        3456666777999999999999998876

>3pj0_A LMO0305 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-biology, lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}

Probab=99.91  E-value=2.8e-24  Score=199.16  Aligned_cols=295  Identities=12%  Similarity=0.026  Sum_probs=187.0

Q ss_pred             CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE-EEEeccCCCCcccccc---cccC
Q 017259           17 AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI-IVSCCGCFHGRTLAAI---SMSC   92 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~-vi~~~~~yhg~~~~~~---~~~~   92 (374)
                      +++.+...+++++++++++.+..++++||++|+..+++++..     +|     ++ +++.++.+|.......   ...+
T Consensus        44 ~~~~~~~~~l~~~la~~~~~~~~i~~~~g~~a~~~a~~~~~~-----~g-----~~~vvi~~~~~~~~~~~~~~~~~~~g  113 (359)
T 3pj0_A           44 YGNGAVIEDFETKIAKILGKQSAVFFPSGTMAQQIALRIWAD-----RK-----ENRRVAYHPLSHLEIHEQDGLKELQQ  113 (359)
T ss_dssp             TTBSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHHH-----HH-----TCCEEEECTTCHHHHSSTTHHHHHHC
T ss_pred             ccCCHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHHHh-----cC-----CCcEEEEeccceeeehhcchHHHhcC
Confidence            345677889999999999988888889999999999998853     34     54 5555544444322211   1111


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      ....   ..+. .+.    ..|+++++++ .   ++++++++++++|++|+..++.+++++|.++|++||++||+|++|.
T Consensus       114 ~~~~---~v~~-~~~----~~d~~~l~~~-~---~~~~~v~~~~p~n~~~G~~~~~~~l~~l~~~~~~~~~~li~D~a~~  181 (359)
T 3pj0_A          114 ITPL---LLGT-ANQ----LLTIDDIKSL-R---EPVSSVLIELPQREIGGQLPAFEELEKISEYCHEQGISLHLDGARL  181 (359)
T ss_dssp             CEEE---ECSC-TTS----CCCHHHHHTC-S---SCCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHHTCEEEEEETTC
T ss_pred             ceEE---ecCC-cCC----CcCHHHHHhc-c---CCceEEEEEecccCCCcccCCHHHHHHHHHHHHHcCCEEEEECcch
Confidence            1110   0011 000    1278888876 2   5789999999888875555589999999999999999999999986


Q ss_pred             CCc--ccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          173 GLA--RSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       173 ~~~--~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      .+.  ..+...  .......|++  |+||+++++. + |+++.++++++.+...  ..+.........++++..+++...
T Consensus       182 ~~~~~~~~~~~--~~~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~a~~~~l~~~~  257 (359)
T 3pj0_A          182 WEITPFYQKSA--EEICALFDSVYVSFYKGIGGIA-G-AILAGNDDFVQEAKIWKRRYGGDLISLYPYILSADYYFEKRI  257 (359)
T ss_dssp             GGGHHHHTCCH--HHHHTTCSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHG
T ss_pred             hcchhhhCCCH--HHhhccCCEEEEeccccCCCcc-e-EEEECCHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHHH
Confidence            321  111111  0111223544  8899988665 4 6788899888877532  112222223333444445555432


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CC
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DT  319 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~  319 (374)
                        +..++.+++.+++.+.|+++    |++... .+..+.++++.++... ..+..++.+.|.++||.++++.      .+
T Consensus       258 --~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~l~~~GV~v~~g~~~~~~~~~  330 (359)
T 3pj0_A          258 --GKMAEYFEAAKGLAERFNSC----SGVKTVPEVPVSNMFHVYFENSA-DEIGAILTKIQDETGVGISGYLQEKSADVC  330 (359)
T ss_dssp             --GGHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEESSCH-HHHHHHHHHHHHHHCEECCSCCEEEETTEE
T ss_pred             --HHhHHHHHHHHHHHHHHhhC----CCceeeccCCcceEEEEEecCcc-chhHHHHHHHHHhcCcEecCCccccCCCce
Confidence              33455666677777766553    222221 2245667777775321 1146789999999999999863      35


Q ss_pred             EEEEecCC---CCCHHHHHHHHHHHHHH
Q 017259          320 IVRLTPPL---SISSNELQEGSKALHDV  344 (374)
Q Consensus       320 ~lRi~~~~---~~~~e~i~~~~~~l~~~  344 (374)
                      ++|+++..   ..+.+++++++++|.++
T Consensus       331 ~~r~~i~~~~~~~~~e~l~~~l~~l~~~  358 (359)
T 3pj0_A          331 AFEVSVGDAFAEIPAKNLELVFRCLEKE  358 (359)
T ss_dssp             EEEEECCTTGGGSCHHHHHHHHHHHHHH
T ss_pred             EEEEEecCccccCCHHHHHHHHHHHHhc
Confidence            78997643   36889999999988765

>3k7y_A Aspartate aminotransferase; aminotrans pyridoxal phosphate; HET: PLP; 2.80A {Plasmodium falciparum} SCOP: c.67.1.0

Probab=99.91  E-value=4.3e-24  Score=200.64  Aligned_cols=296  Identities=12%  Similarity=0.036  Sum_probs=184.9

Q ss_pred             CCCCcHHHHHHHHhcccC----CC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMFG----YD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~----~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..++++.+++++....+    .+  +++.|+|+++|+..++.++...       . + |+|++.+|+|.++.......+
T Consensus        73 G~~~lr~aia~~~~~~~~~~~~~~~i~i~~t~G~~~al~~~~~~l~~~-------~-~-d~Vlv~~P~y~~~~~~~~~~g  143 (405)
T 3k7y_A           73 GTEDFSTLTQNLIFGNNSKYIEDKKICTIQCIGGTGAIFVLLEFLKML-------N-V-ETLYVTNPPYINHVNMIESRG  143 (405)
T ss_dssp             SCHHHHHHHHHHHHCSSCTTTTTTCEEEEEEEHHHHHHHHHHHHHHTT-------T-C-CEEEEESSCCHHHHHHHHTTT
T ss_pred             CcHHHHHHHHHHHcCCCCccccccceEEEEcCchHHHHHHHHHHHHhc-------C-C-CEEEEeCCCCHhHHHHHHHcC
Confidence            434445555555544332    23  3699999999999999988521       0 2 899999999988766655544


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccc-cCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPI-QGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~-~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ..........+  .+...    |++++++++++. +++++++++++ +||||... +++.+++|.++|++||++||+||+
T Consensus       144 ~~~~~v~~~~~--~~~~~----d~~~l~~~l~~~-~~~~~i~l~~~~~NPTG~~~-s~~~~~~l~~~~~~~~~~vi~De~  215 (405)
T 3k7y_A          144 FNLKYINFFDY--NLIDI----NYDLFLNDLRNI-PNGSSVILQISCYNPCSVNI-EEKYFDEIIEIVLHKKHVIIFDIA  215 (405)
T ss_dssp             CEEEEECCEET--TTTEE----CHHHHHHHHHHS-CSSCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHHCCEEEEEES
T ss_pred             CeEEEEecccc--ccCCc----CHHHHHHHHHhC-CCCeEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHHCCeEEEEecC
Confidence            32221110000  00111    799999999864 34667777765 78888776 899999999999999999999999


Q ss_pred             ccCCccccc---Ccccc-cCCCCCcE---EEeccccc-CCccchhhhee---CHHHHhhcCC----CCCCCCCCCCHHHH
Q 017259          171 QSGLARSGR---MLASD-WEEVRPDM---VILGKALG-GGVIPVSAVLA---DKEVMLCIQP----GEHGSTFGGNPLAS  235 (374)
Q Consensus       171 ~~~~~~~g~---~~~~~-~~~~~~d~---~s~sK~~~-~G~~~~G~~~~---~~~~~~~~~~----~~~~~~~~~~~~~~  235 (374)
                      |.++.+.+.   ..... .......+   .||||.++ +|+ |+||+++   ++++.+.+..    .......+.+.+++
T Consensus       216 Y~~l~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~Gl-RiG~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~q  294 (405)
T 3k7y_A          216 YQGFGHTNLEEDVLLIRKFEEKNIAFSVCQSFSKNMSLYGE-RAGALHIVCKNQEEKKIVFNNLCFIVRKFYSSPVIHTN  294 (405)
T ss_dssp             CTTTSSSSTTGGGHHHHHHHTTTCCEEEEEECTTTSCCTTT-TEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHH
T ss_pred             cccccCCCcccchHHHHHHHhcCCcEEEEeeCCccCCCccc-cceEEEEEeCCHHHHHHHHHHHHHHHhcccCCCcHHHH
Confidence            998754321   11111 11122333   39999999 799 9999753   5665544421    11112224567887


Q ss_pred             HHHHHHHHHH------hh--hcHHHHHHHHHHHHHHHHH----HHHHhCCCceeeEEEE-eeeEEEEeccCCCchhHHHH
Q 017259          236 AVAIASLDVI------RD--EKLAERSAHLGEELRQHLF----KIQQQFPNYVKEVRGR-GLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       236 ~aa~~al~~~------~~--~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~~~~~~-g~~~~~~~~~~~~~~~~~~~  302 (374)
                      .++.++++.-      .+  ..++++++++++.+.+.|+    +++.  +.......+. |.|+|+.++        .++
T Consensus       295 ~~~~~~l~~~~l~~~~~~~l~~~~~~~~~~R~~l~~~L~~~~~~~g~--~~~~~~~~p~gg~f~~~~l~--------~~~  364 (405)
T 3k7y_A          295 RILCQLLNNQNLKLNWIKELSQLSQRITNNRILFFNKLETYQKKYNL--NYDWNVYKKQRGLFSFVPLL--------AKI  364 (405)
T ss_dssp             HHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGGTC--CCCGGGGSSCCSSEEECGGG--------GGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcCC--CCCCccccCCceEEEecCCC--------HHH
Confidence            7777666531      11  1334445666666666665    3320  1001112233 445554332        144


Q ss_pred             HHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          303 CLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++|.++||.+.|++    ||++. ..+++++++++++|+++++
T Consensus       365 ~~~L~~~gV~v~p~~----Ris~a-~~~~~~i~~~~~~i~~~~~  403 (405)
T 3k7y_A          365 AEHLKTHHIYIINNG----RINVS-GITKNNVDYIADKICLSLS  403 (405)
T ss_dssp             TTTTTTTTEECCTTS----EEEGG-GCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCEeecCCC----eEEEe-ccCHHHHHHHHHHHHHHHh
Confidence            566777799999974    99843 3477899999999999987

>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase; structural genomics, joint center for structural genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium sibiricum}

Probab=99.91  E-value=7e-24  Score=196.40  Aligned_cols=293  Identities=13%  Similarity=0.082  Sum_probs=184.4

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccE-EEEeccCCCCccccc---ccccCCc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAI-IVSCCGCFHGRTLAA---ISMSCDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~-vi~~~~~yhg~~~~~---~~~~~~~   94 (374)
                      .++...+|+++|+++++.+..++++||++|+..+++++.     .+|     |+ +++.++.+|......   ....+..
T Consensus        45 ~~~~~~~l~~~la~~~~~~~~i~~~~G~~a~~~al~~~~-----~~g-----d~~~vi~~~~~~~~~~~~~~~~~~~g~~  114 (357)
T 3lws_A           45 TGAIIEPFEQKFADVLGMDDAVFFPSGTMAQQVALRIWS-----DET-----DNRTVAYHPLCHLEIHEQDGLKELHPIE  114 (357)
T ss_dssp             EETTHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHHH-----HHH-----TCCEEEECTTCHHHHSSTTHHHHHSSCE
T ss_pred             CChHHHHHHHHHHHHhCCCcEEEecCcHHHHHHHHHHHh-----hcC-----CCcEEEecccceeeeeccchhhhccCcE
Confidence            357889999999999998988888999999999999885     344     52 444444444432221   1111110


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-  173 (374)
                      ..   ..+. .+.    ..|+++++++    . +++++++++++|++|+..++.+++++|.++|++||++||+||+|.. 
T Consensus       115 ~~---~v~~-~~~----~~d~~~l~~~----~-~~~~v~~~~p~np~~G~~~~~~~l~~i~~~~~~~~~~li~D~a~~~~  181 (357)
T 3lws_A          115 TI---LVGA-ADR----LMTLDEIKAL----P-DIACLLLELPQREIGGVAPAFSELETISRYCRERGIRLHLDGARLFE  181 (357)
T ss_dssp             EE---ECSC-TTS----CCCHHHHHTC----C-SCSEEEEESSBGGGTSBCCCHHHHHHHHHHHHHTTCEEEEEETTHHH
T ss_pred             EE---EecC-CCC----CcCHHHHhcC----c-CcceEEEEcccccCCceeCCHHHHHHHHHHHHHcCCEEEEECchhhh
Confidence            00   0010 000    1278888765    1 3888999999888744555899999999999999999999999861 


Q ss_pred             -CcccccCcccccCCCCCc--EEEecccccCCccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          174 -LARSGRMLASDWEEVRPD--MVILGKALGGGVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       174 -~~~~g~~~~~~~~~~~~d--~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                       ....+.... . +....|  +.|+||++++.. . |++++++++++.+....  .+.+.....+.++++.++++...  
T Consensus       182 ~~~~~~~~~~-~-~~~~~d~~~~s~sK~~~~~~-g-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~--  255 (357)
T 3lws_A          182 MLPYYEKTAA-E-IAGLFDSIYISFYKGLGGIA-G-AILAGPAAFCQTARIWKRRYGGDLISLYPYIVSADYYYELRK--  255 (357)
T ss_dssp             HHHHHTCCHH-H-HHTTSSEEEEESSSTTCCSS-C-EEEEECHHHHHHHHHHHHHTTCCCSCCHHHHHHHHHHHHHHT--
T ss_pred             hhhhcCCChH-H-HHhcCCEEEEeccccCCCCc-e-EEEEcCHHHHHHHHHHHHHhcCCcccchHHHHHHHHHHHHHH--
Confidence             111121111 0 001223  348999996544 3 78888988887775321  12222223344455556666432  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEEE
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIVR  322 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~lR  322 (374)
                      +..++.+++.+++.+.|+++    |++.. ..++.+.++|+.++... ..+..++.+.|.++||.++++.     ..++|
T Consensus       256 ~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~~Gi~v~~g~~~~~~~~~~r  330 (357)
T 3lws_A          256 DRMGQYYEQAKQLAEQFNAL----PGVHTTPEVPVSNMFHLHFDGQA-ADISPKLEQVQEETGLGFVGYLVDKDGYCSTE  330 (357)
T ss_dssp             TCHHHHHHHHHHHHHHHHTS----TTEEEESSSCSSSEEEEEEESCH-HHHHHHHHHHHHHHCEESCSCCEECSSEEEEE
T ss_pred             HHHHHHHHHHHHHHHHHHhC----CCCeeccCCCcceEEEEEecCCh-HHHHHHHHHHHHhcCeEEecccccCCCceEEE
Confidence            22344566666676666543    23322 12345778888886531 0136789999999999998863     24899


Q ss_pred             EecCC---CCCHHHHHHHHHHHHHHH
Q 017259          323 LTPPL---SISSNELQEGSKALHDVL  345 (374)
Q Consensus       323 i~~~~---~~~~e~i~~~~~~l~~~~  345 (374)
                      ++++.   ..+.+++++++++|.+++
T Consensus       331 ~~i~~~~~~~~~~~l~~al~~l~~al  356 (357)
T 3lws_A          331 ISVGDAYGELDQQTRDAGFARLRQAF  356 (357)
T ss_dssp             EEBCTTGGGSCHHHHHHHHHHHHHHC
T ss_pred             EEecchhhhcCHHHHHHHHHHHHHhc
Confidence            98653   368899999999998765

>2po3_A 4-dehydrase; external aldimine, PLP, aminotransferase, TDP-sugar; HET: T4K; 2.10A {Streptomyces venezuelae}

Probab=99.91  E-value=2e-23  Score=197.99  Aligned_cols=282  Identities=16%  Similarity=0.160  Sum_probs=185.2

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .+...++++.++++++.+++++++||++|++.+++++.      +|     |+|++.+++|++........+......  
T Consensus        51 ~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~l~~l~------~g-----d~Vlv~~~~~~~~~~~~~~~G~~~~~v--  117 (424)
T 2po3_A           51 GPLVREFEERVAGLAGVRHAVATCNATAGLQLLAHAAG------LT-----GEVIMPSMTFAATPHALRWIGLTPVFA--  117 (424)
T ss_dssp             CHHHHHHHHHHHHHHTSSEEEEESCHHHHHHHHHHHHT------CC-----SEEEEESSSCTHHHHHHHHTTCEEEEE--
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHcC------CC-----CEEEECCCccHHHHHHHHHcCCEEEEE--
Confidence            46788999999999999999999999999999999872      35     999999999988765443332211111  


Q ss_pred             CCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCccc
Q 017259          100 FGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARS  177 (374)
Q Consensus       100 ~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~  177 (374)
                        +...    -.+ -|+++++++++   ++++++++++   ++|...+    +++|.++|++||++||+||+|+ |+.+.
T Consensus       118 --~~~~----~~~~~d~~~l~~~i~---~~~~~v~~~~---~tG~~~~----l~~i~~la~~~~~~li~Dea~~~g~~~~  181 (424)
T 2po3_A          118 --DIDP----DTGNLDPDQVAAAVT---PRTSAVVGVH---LWGRPCA----ADQLRKVADEHGLRLYFDAAHALGCAVD  181 (424)
T ss_dssp             --CBCT----TTSSBCHHHHGGGCC---TTEEEEEEEC---GGGCCCC----HHHHHHHHHHTTCEEEEECTTCTTCEET
T ss_pred             --ecCC----CcCCcCHHHHHHhhC---cCCcEEEEEC---CCCCcCC----HHHHHHHHHHcCCEEEEECccccCCeEC
Confidence              1100    011 17888888776   4788888754   4676666    9999999999999999999999 66544


Q ss_pred             ccCcccccCCCCCcEE--Eec--ccccCCccchhhheeC-HHHHhhcCCCCC------------CCCCCCCHHHHHHHHH
Q 017259          178 GRMLASDWEEVRPDMV--ILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEH------------GSTFGGNPLASAVAIA  240 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~--s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~------------~~~~~~~~~~~~aa~~  240 (374)
                      +..+     +..+|++  |||  |++++ . ++|+++.+ +++.+.+.....            +.++..+.+..+++..
T Consensus       182 ~~~~-----~~~~di~~~S~sk~K~l~~-~-~~G~~v~~~~~l~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~  254 (424)
T 2po3_A          182 GRPA-----GSLGDAEVFSFHATKAVNA-F-EGGAVVTDDADLAARIRALHNFGFDLPGGSPAGGTNAKMSEAAAAMGLT  254 (424)
T ss_dssp             TEET-----TSSSSEEEEECCTTSSSCC-S-SCEEEEESCHHHHHHHHHHHBTTTTCTTCCTTCCCBCCCCHHHHHHHHH
T ss_pred             Ceec-----ccccCEEEEeCCCCCCccC-C-CCeEEEeCCHHHHHHHHHHHhcCccccccccccCcCCCcCHHHHHHHHH
Confidence            4321     1123554  666  77766 6 89999988 777666542111            1122335555555554


Q ss_pred             HHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EE-E--eeeEEEEecc---CCCchhHHHHHHHHHHCCeE
Q 017259          241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RG-R--GLFNAVEFDK---TALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       241 al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~-~--g~~~~~~~~~---~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      .++.+  +++.++.+++.+++.+.|++    +|++....  .+ .  ..++++.+++   ..   +..++.+.|.++||.
T Consensus       255 ~~~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~~~~l~~~L~~~gI~  325 (424)
T 2po3_A          255 SLDAF--PEVIDRNRRNHAAYREHLAD----LPGVLVADHDRHGLNNHQYVIVEIDEATTGI---HRDLVMEVLKAEGVH  325 (424)
T ss_dssp             HHHHH--HHHHHHHHHHHHHHHHHTCS----CTTEEECCGGGGSCCCCCCEEEEECHHHHSS---CHHHHHHHHHHTTEE
T ss_pred             HHHHH--HHHHHHHHHHHHHHHHHhcc----CCCccccCCCCCCccccEEEEEEECCccchh---hHHHHHHHHHHCCCc
Confidence            44332  23444555555555554433    22221111  11 1  2344466653   22   578899999999999


Q ss_pred             eccCCC-------------------------CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPTHD-------------------------TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~~~-------------------------~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++...                         ..+|+.++..++++|+++++++|+++++
T Consensus       326 v~~~~~~~~~~~~~~~~~g~~~~~~~~r~~~~~l~l~~~~~~t~e~i~~~~~~L~~~~~  384 (424)
T 2po3_A          326 TRAYFSPGCHELEPYRGQPHAPLPHTERLAARVLSLPTGTAIGDDDIRRVADLLRLCAT  384 (424)
T ss_dssp             CBCTTCSCGGGSTTTTTSCCCCCHHHHHHHTTEEEECCSTTCCHHHHHHHHHHHHHHHH
T ss_pred             eecccCCccccchhhhhcCCCCChhHHHHhcCEEEeeCCCCCCHHHHHHHHHHHHHHHh
Confidence            986321                         1278877789999999999999998886

>2fnu_A Aminotransferase; protein-product complex, structural genomics, montreal-kings bacterial structural genomics initiative, BSGI; HET: PMP UD1; 1.50A {Helicobacter pylori} SCOP: c.67.1.4 PDB: 2fni_A* 2fn6_A*

Probab=99.91  E-value=7.3e-24  Score=197.45  Aligned_cols=292  Identities=14%  Similarity=0.150  Sum_probs=189.2

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      +.+...++++.|+++++.+++++++||++|++.+++.+..+  .++|     |+|++..++|++....+...+....+  
T Consensus        30 ~~~~~~~l~~~la~~~~~~~v~~~~ggt~al~~~~~~~~~~--~~~g-----d~Vl~~~~~~~~~~~~~~~~g~~~~~--  100 (375)
T 2fnu_A           30 QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFSEF--SADR-----NEIITTPISFVATANMLLESGYTPVF--  100 (375)
T ss_dssp             SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSSCC--CTTS-----CEEEECSSSCTHHHHHHHHTTCEEEE--
T ss_pred             CChHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHhccc--CCCC-----CEEEECCCccHhHHHHHHHCCCEEEE--
Confidence            35678899999999999899999999999999999887311  2456     99999999998876554433221111  


Q ss_pred             cCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259           99 GFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus        99 ~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                        .+...+.    ..|+++++++++   +++++++++++   +|.+.+    +++|.++|++||++||+||+|+..... 
T Consensus       101 --~~~~~~~----~~d~~~l~~~i~---~~~~~v~~~~~---tG~~~~----l~~i~~l~~~~~~~li~D~a~~~~~~~-  163 (375)
T 2fnu_A          101 --AGIKNDG----NIDELALEKLIN---ERTKAIVSVDY---AGKSVE----VESVQKLCKKHSLSFLSDSSHALGSEY-  163 (375)
T ss_dssp             --CCBCTTS----SBCGGGSGGGCC---TTEEEEEEECG---GGCCCC----HHHHHHHHHHHTCEEEEECTTCTTCEE-
T ss_pred             --eccCCCC----CCCHHHHHhhcC---cCceEEEEeCC---cCCccC----HHHHHHHHHHcCCEEEEECccccCCeE-
Confidence              1111111    126788887776   46887766655   688887    999999999999999999999843211 


Q ss_pred             cCcccccCCCCCcEEEec--ccccCCccchhhhee-C-HHHHhhcCCCC----------------CCCCCCCCHHHHHHH
Q 017259          179 RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-D-KEVMLCIQPGE----------------HGSTFGGNPLASAVA  238 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~-~~~~~~~~~~~----------------~~~~~~~~~~~~~aa  238 (374)
                      .......++ +.++.|+|  |.+++|   +|+++. + +++.+.+....                .+.++..+.+.++++
T Consensus       164 ~~~~~~~~~-~i~~~s~s~~K~~~~g---~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  239 (375)
T 2fnu_A          164 QNKKVGGFA-LASVFSFHAIKPITTA---EGGAVVTNDSELHEKMKLFRSHGMLKKDFFEGEVKSIGHNFRLNEIQSALG  239 (375)
T ss_dssp             TTEETTSSS-SEEEEECCTTSSSCCS---SCEEEEESCHHHHHHHHHHTBTTEEESSSSCEEESSCCCBCCCCHHHHHHH
T ss_pred             CCeeccccC-CeEEEeCCCCCCcccc---CceEEEeCCHHHHHHHHHHHhcCCccccccccccccccccCCCCHHHHHHH
Confidence            110111111 23455888  998654   466665 3 66655543221                122234566655555


Q ss_pred             HHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-----EEEeeeEEEEeccCCCch-hHHHHHHHHHHCCeE
Q 017259          239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-----RGRGLFNAVEFDKTALPV-SAYDICLKMKERGIL  312 (374)
Q Consensus       239 ~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-----~~~g~~~~~~~~~~~~~~-~~~~~~~~l~~~Gi~  312 (374)
                      ...++.+  +++.++.+++.+++.+.|+++    |++....     ...+.++++.++..  +. +..++.+.|.++||.
T Consensus       240 ~~~~~~~--~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~L~~~gi~  311 (375)
T 2fnu_A          240 LSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQK--FFTCKKLILESLHKRGIL  311 (375)
T ss_dssp             HHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECGG--GGGGHHHHHHHHHHTTEE
T ss_pred             HHHHHHH--HHHHHHHHHHHHHHHHHhhcC----CCccccCCCCCCCcceEEEEEEeCcc--ccchHHHHHHHHHHCCCC
Confidence            4443322  245666666667766666543    2221111     12234456666532  11 467899999999999


Q ss_pred             eccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          313 AKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       313 v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++...                         .+++|++++...+++|+++++++|+++++ ++
T Consensus       312 v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~lRi~~~~~~t~~~i~~~~~~l~~~~~-~~  372 (375)
T 2fnu_A          312 AQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE-SF  372 (375)
T ss_dssp             CBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             ccccccccccchhhhcCCCccCChHHHHHHhCEEEecCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            98311                         16899999988999999999999999987 54

>3cog_A Cystathionine gamma-lyase; CTH, PLP, propargylglycine, SGC, inhibitor, structural genom stockholm, structural genomics consortium; HET: PLP; 2.00A {Homo sapiens} PDB: 2nmp_A* 3elp_B

Probab=99.91  E-value=5e-24  Score=200.58  Aligned_cols=292  Identities=14%  Similarity=0.124  Sum_probs=194.7

Q ss_pred             CcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           15 SRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        15 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++.++++...++++.++++++.+..++++||++|+..+++ +     .++|     |+|++.++.|++........... 
T Consensus        61 y~r~~~p~~~~l~~~la~~~g~~~~i~~~sG~~ai~~~~~-l-----~~~g-----d~Vl~~~~~y~~~~~~~~~~~~~-  128 (403)
T 3cog_A           61 YSRSGNPTRNCLEKAVAALDGAKYCLAFASGLAATVTITH-L-----LKAG-----DQIICMDDVYGGTNRYFRQVASE-  128 (403)
T ss_dssp             -----CHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHT-T-----SCTT-----CEEEEESSCCHHHHHHHHHTGGG-
T ss_pred             ccCCCCchHHHHHHHHHHHhCCCcEEEECCHHHHHHHHHH-H-----hCCC-----CEEEEeCCCcchHHHHHHHHHHH-
Confidence            3456678889999999999988777778888999998887 5     5567     99999999998744322111100 


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC-CEEEEeccccC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN-ILMIADEIQSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~-i~li~Dea~~~  173 (374)
                              ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++|| +++|+||+|++
T Consensus       129 --------~G~~v~~v~~~d~~~l~~~i~---~~t~~v~~~~p~nptG~~~~----l~~i~~la~~~g~~~livD~~~~~  193 (403)
T 3cog_A          129 --------FGLKISFVDCSKIKLLEAAIT---PETKLVWIETPTNPTQKVID----IEGCAHIVHKHGDIILVVDNTFMS  193 (403)
T ss_dssp             --------GTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTSSSCCEEEEECTTTC
T ss_pred             --------cCCEEEEECCCCHHHHHHhcC---cCCeEEEEECCCCCCCeeeC----HHHHHHHHHHcCCCEEEEECCCcc
Confidence                    113355566668999998887   57999999999999999998    999999999999 99999999986


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      +.. ..++     +...|++  |++|.++| |..++|+++++ +++.+.+...........+++.+.++..+++.+.  .
T Consensus       194 ~~~-~~~~-----~~~~div~~S~sK~~~g~~~~~~G~v~~~~~~l~~~l~~~~~~~g~~~~~~~~~~~~~~l~~l~--~  265 (403)
T 3cog_A          194 PYF-QRPL-----ALGADISMYSATKYMNGHSDVVMGLVSVNCESLHNRLRFLQNSLGAVPSPIDCYLCNRGLKTLH--V  265 (403)
T ss_dssp             TTT-CCTT-----TTTCSEEEEETTTTTTCSSCCCCEEEEECCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTTHH--H
T ss_pred             ccc-CCcc-----ccCCeEEEEcChhhccCCCCCeEEEEEECcHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHHH--H
Confidence            522 1221     2345665  88899985 32278998884 6777776643333344567888877777776432  2


Q ss_pred             HHHHHHHHHHHHHHHHHHHH----------HhCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-
Q 017259          250 LAERSAHLGEELRQHLFKIQ----------QQFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-  315 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~----------~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-  315 (374)
                      ..++..++...+.+.+++..          ..+|++.   ....+.+.++.|.++..     ..+..+.|.+.|+.+.. 
T Consensus       266 r~~~~~~n~~~l~~~l~~~~~v~~~~~~~L~~~p~~~~~~~~~~~~g~~~~~~l~~~-----~~~~~~~l~~~~i~~~~~  340 (403)
T 3cog_A          266 RMEKHFKNGMAVAQFLESNPWVEKVIYPGLPSHPQHELVKRQCTGCTGMVTFYIKGT-----LQHAEIFLKNLKLFTLAE  340 (403)
T ss_dssp             HHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSC-----HHHHHHHHHHCSSSEECS
T ss_pred             HHHHHHHHHHHHHHHHhcCCCEEEEECCCCCCCCcHHHHHhcCCCCceEEEEEecCC-----HHHHHHHHHhCCcceEcc
Confidence            24444455555555554320          0111110   01123477888877642     34566667777774421 


Q ss_pred             --C---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 --T---------------------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 --~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                        +                           ..+.+|++++...++++++.+.++|+++++
T Consensus       341 s~G~~~sl~~~p~~~~~~~~~~~~~~~~g~~~~~iRlSvg~e~~~d~i~~l~~al~~~~~  400 (403)
T 3cog_A          341 SLGGFESLAELPAIMTHASVLKNDRDVLGISDTLIRLSVGLEDEEDLLEDLDQALKAAHP  400 (403)
T ss_dssp             CCSSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSCHHHHHHHHHHHHHHHCC
T ss_pred             CCCCcceeeecccccccccCCHHHHHhcCCCcCeEEEEeCCCCHHHHHHHHHHHHHHhhc
Confidence              0                           157999999987777777777777766554

>2aeu_A Hypothetical protein MJ0158; selenocysteine synthase, PLP, pyridoxal phosphate, HOMO- oligomerization, unknown function; 1.70A {Methanocaldococcus jannaschii} SCOP: c.67.1.8 PDB: 2aev_A*

Probab=99.91  E-value=2.8e-24  Score=200.39  Aligned_cols=292  Identities=12%  Similarity=0.032  Sum_probs=183.7

Q ss_pred             HHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           23 FPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        23 ~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .+++++.+++++|.   +++++++||++|++.+++.+       +|     |+|++.+|+||++......+... +    
T Consensus        60 ~~~~~~~~a~~~g~~~~~~~~~~~ggt~a~~~~~~~~-------~g-----d~Vl~~~~~y~~~~~~~~~~~~~-g----  122 (374)
T 2aeu_A           60 AEKVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-------KP-----KKVIHYLPELPGHPSIERSCKIV-N----  122 (374)
T ss_dssp             HHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-------CC-----SEEEEECSSSSCCTHHHHHHHHT-T----
T ss_pred             HHHHHHHHHHHhCCCCcceEEEEcChHHHHHHHHHhC-------CC-----CEEEEecCCCCccHHHHHHHHHc-C----
Confidence            34566666666687   78999999999999999865       46     99999999998854321111000 0    


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCCcEEE-EEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAG-FLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~-vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                           ..+..+  .|+++++++ +   +++++ +++++++|++|.   +...+++|.++|++||++||+||+|+.+. .+
T Consensus       123 -----~~~~~v--~d~~~l~~~-~---~~~~~~v~~~~p~nptG~---~~~~l~~i~~l~~~~~~~li~De~~~~~~-~~  187 (374)
T 2aeu_A          123 -----AKYFES--DKVGEILNK-I---DKDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARV-RL  187 (374)
T ss_dssp             -----CEEEEE--SCHHHHHTT-C---CTTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHH-HH
T ss_pred             -----cEEEEe--CCHHHHHhc-C---CCccEEEEEccCCCCCCC---CcccHHHHHHHHHHcCCEEEEECCccccc-cc
Confidence                 112222  488888876 3   57888 999888888883   44559999999999999999999987442 11


Q ss_pred             cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHH
Q 017259          179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH  256 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~  256 (374)
                      ...........+|++  |+||.++ |+ ++||+++++++++.+.........+.+++.++++.++++.+..+ ..++..+
T Consensus       188 ~~~~~~~~~~~~di~~~S~sK~l~-g~-~~G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~al~~~~~~-~~~~~~~  264 (374)
T 2aeu_A          188 LFNQPPALKLGADLVVTSTDKLME-GP-RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLE-RIRKAFE  264 (374)
T ss_dssp             HTTCCCHHHHTCSEEEEETTSSSS-SC-SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHH-HHHHHHH
T ss_pred             ccccCCccccCCcEEEecCccccc-Cc-ceEEEEECHHHHHHHHHhhccccCCCCHHHHHHHHHHHHHHhHH-HHHHHHH
Confidence            110000111234655  7889976 47 99999999998887764332233466888999999988875321 2344444


Q ss_pred             HHHHH----HHHHHHHHHhC---CCceeeEEEEeeeEEEE-eccCCCchhHHHHHHHHH-HCCeEeccCC-----CCEEE
Q 017259          257 LGEEL----RQHLFKIQQQF---PNYVKEVRGRGLFNAVE-FDKTALPVSAYDICLKMK-ERGILAKPTH-----DTIVR  322 (374)
Q Consensus       257 ~~~~~----~~~l~~~~~~~---~~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~-----~~~lR  322 (374)
                      +.+.+    ++.|.+....+   +++.....+.|.++++. ++......+..+++..++ ++||.+.++.     .+++|
T Consensus       265 ~~~~~~~~~~~~l~~~L~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~ll~~~gV~v~~g~~~~~~~~~lR  344 (374)
T 2aeu_A          265 RAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLR  344 (374)
T ss_dssp             HHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEE
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhccCcceeeCCceEEEEeecccccccccchHHHHHHHHHhCCEEEecCCCCCCCCCeEE
Confidence            44444    55555543221   01111223345554442 211000001123665554 6799998752     45899


Q ss_pred             EecCC-CCCHHHHHHHHHHHHHHHhccCC
Q 017259          323 LTPPL-SISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       323 i~~~~-~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      |+++. ..++++++++.+.|+++++ ++.
T Consensus       345 i~~~~~~~~~~~l~~l~~~l~~~l~-~~~  372 (374)
T 2aeu_A          345 IDLTSRDAERIDDNYIIKAIVESIK-MAF  372 (374)
T ss_dssp             EETTSGGGGGSCHHHHHHHHHHHHH-HHT
T ss_pred             EEcCCchHHHHHHHHHHHHHHHHHH-HHh
Confidence            99753 2233458899999998888 654

>2c81_A Glutamine-2-deoxy-scyllo-inosose aminotransferase; SMAT, butirosin, aminoglycoside antibiotics; HET: PMP; 1.7A {Bacillus circulans} PDB: 2c7t_A*

Probab=99.91  E-value=1.1e-22  Score=192.62  Aligned_cols=306  Identities=13%  Similarity=0.138  Sum_probs=194.4

Q ss_pred             hHHHHHHHhcccc-C--cCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLS-S--RAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~-~--~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +++.+++.+.... +  ..+..++.+++++++++++|.+++++++||++|++.+++.+.    ..+|     |+|++..+
T Consensus        20 ~a~~~~~~~~~~~~~~~~~g~~~l~~~l~~~la~~~g~~~~i~~~~gt~al~~~~~~~~----~~~g-----d~Vl~~~~   90 (418)
T 2c81_A           20 RKIEEVFQSNRWAISGYWTGEESMERKFAKAFADFNGVPYCVPTTSGSTALMLALEALG----IGEG-----DEVIVPSL   90 (418)
T ss_dssp             HHHHHHHHHTCCSTTSBCCSSCCHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESS
T ss_pred             HHHHHHHhcCCccccCcccCCHHHHHHHHHHHHHHhCCCcEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCC
Confidence            4666666654322 1  123345589999999999998899999999999999998873    3566     99999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHH
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL  157 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l  157 (374)
                      +|++....+...+......    +...    ..+ -|+++++++++   ++++++++++   ++|...+    +++|.++
T Consensus        91 ~~~~~~~~~~~~g~~~~~~----~~~~----~~~~~d~~~l~~~i~---~~~~~v~~~~---~~G~~~~----~~~i~~~  152 (418)
T 2c81_A           91 TWIATATAVLNVNALPVFV----DVEA----DTYCIDPQLIKSAIT---DKTKAIIPVH---LFGSMAN----MDEINEI  152 (418)
T ss_dssp             SCTHHHHHHHHTTCEEEEE----CBCT----TTCSBCHHHHGGGCC---TTEEEECCBC---CTTCCCC----HHHHHHH
T ss_pred             ccHhHHHHHHHcCCEEEEE----ecCC----CCCCcCHHHHHHhhC---CCCeEEEEeC---CcCCccc----HHHHHHH
Confidence            9988765544333221111    1100    011 17888888876   4788888754   5677776    9999999


Q ss_pred             HHhcCCEEEEeccccCCc-ccccCcccccCCCCCcEEEe--cccccCCccchhhheeC-HHHHhhcCCCCCC--------
Q 017259          158 CSKYNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLAD-KEVMLCIQPGEHG--------  225 (374)
Q Consensus       158 ~~~~~i~li~Dea~~~~~-~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~-~~~~~~~~~~~~~--------  225 (374)
                      |++||++||+||+|+.+. ..+...  ..++ +.++.||  +|.+++|  ++|+++.+ +++.+.+......        
T Consensus       153 ~~~~~~~li~D~a~~~~~~~~~~~~--~~~~-~~~~~s~s~~K~~~~g--~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~  227 (418)
T 2c81_A          153 AQEHNLFVIEDCAQSHGSVWNNQRA--GTIG-DIGAFSCQQGKVLTAG--EGGIIVTKNPRLFELIQQLRADSRVYCDDS  227 (418)
T ss_dssp             HHHTTCEEEEECTTCTTCEETTEET--TSSS-SEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHHBTTEEECSCG
T ss_pred             HHHCCCEEEEECcccccCccCCEec--cccc-ceEEEeccCCcccCCC--CeEEEEECCHHHHHHHHHHHHhCccccccc
Confidence            999999999999999653 222211  1111 2345577  8999874  78888884 6765554321000        


Q ss_pred             ------C------------CCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE----Ee
Q 017259          226 ------S------------TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG----RG  283 (374)
Q Consensus       226 ------~------------~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~----~g  283 (374)
                            .            ....+.+..+.....++.+  +++.++.+++.+++.+.|++    +|++.....+    ..
T Consensus       228 ~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~~~~l~~~--~~~~~~~~~~~~~l~~~L~~----~~g~~~~~~~~~~~~~  301 (418)
T 2c81_A          228 SELMHGDMQLVKKGDIQGSNYCLSEFQSAILLDQLQEL--DDKNAIREKNAMFLNDALSK----IDGIKVMKRPPQVSRQ  301 (418)
T ss_dssp             GGCCTTCBSEEECCSSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTT----STTEEECCCCTTEEEC
T ss_pred             cccccchhhccccccccCcCCCcCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcc----CCCcccCCCCCCCccc
Confidence                  0            0112333322222223222  23455555555666555543    2222111111    11


Q ss_pred             e--eEEEEecc----CCCchhHHHHHHHHHHC-CeE---eccCC------------------------------------
Q 017259          284 L--FNAVEFDK----TALPVSAYDICLKMKER-GIL---AKPTH------------------------------------  317 (374)
Q Consensus       284 ~--~~~~~~~~----~~~~~~~~~~~~~l~~~-Gi~---v~~~~------------------------------------  317 (374)
                      .  ++.+.+++    ..   +..++.+.|.++ ||.   +++..                                    
T Consensus       302 ~~~~~~~~~~~~~~~~~---~~~~l~~~L~~~~gI~~~~v~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  378 (418)
T 2c81_A          302 TYYGYVFRFDPVKFGGL---NADQFCEILREKLNMGTFYLHPPYLPVHKNPLFCPWTKNRYLKSVRKTEAYWRGLHYPVS  378 (418)
T ss_dssp             CCSEEEEEECGGGTTTC---CHHHHHHHHHHHHTCCTTTEECCCCCGGGCTTCCGGGCTTSCHHHHCCHHHHHTCCCHHH
T ss_pred             ccEEEEEEEcccccccc---CHHHHHHHHHHcCCCCcccccccccccccCchhcccccccccccccccccccccCCChHH
Confidence            2  33355653    22   578999999999 999   76531                                    


Q ss_pred             ----CCEEEEecCCCC-CHHHHHHHHHHHHHHHhccC
Q 017259          318 ----DTIVRLTPPLSI-SSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 ----~~~lRi~~~~~~-~~e~i~~~~~~l~~~~~~~~  349 (374)
                          .+.+|++++..+ |++|+++++++|+++++ .+
T Consensus       379 ~~~~~~~lrl~~~~~~gt~edi~~~~~~l~~~~~-~~  414 (418)
T 2c81_A          379 ERASGQSIVIHHAILLAEPSHLSLLVDAVAELAR-KF  414 (418)
T ss_dssp             HHHHHHEEEEEGGGGGSCHHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHhCEEEecCCccCCCHHHHHHHHHHHHHHHH-hh
Confidence                148999999999 99999999999999988 54

>2vi8_A Serine hydroxymethyltransferase; SHMT, E53Q, FTHF, enzyme memory, pyridoxal phosphate, one-carbon metabolism, PLP-dependent enzymes; HET: PLP; 1.67A {Bacillus stearothermophilus} PDB: 2vi9_A* 2via_A* 2vib_A* 1kkj_A* 1kkp_A* 1kl1_A* 1kl2_A* 1yjs_A* 2w7f_A* 2w7d_A* 2w7e_A* 2w7g_A* 2w7h_A* 1yjz_A* 1yjy_A* 2vgu_A* 2vgs_A* 2vgt_A* 2vgv_A* 2vgw_A* ...

Probab=99.90  E-value=1.3e-22  Score=190.98  Aligned_cols=296  Identities=13%  Similarity=0.094  Sum_probs=193.3

Q ss_pred             cHHHHH----HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc--cccCCc
Q 017259           22 KFPVFA----ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDN   94 (374)
Q Consensus        22 ~~~~l~----~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~   94 (374)
                      ...+++    +++++++|.+.. ++++||++|++.+++++     ..+|     |+|++..++|++......  ...+. 
T Consensus        66 ~~~~l~~~~r~~la~~~g~~~~~i~~~sGt~a~~~a~~~~-----~~~g-----d~Vl~~~~~~~~~~~~~~~~~~~g~-  134 (405)
T 2vi8_A           66 YVDIVEELARERAKQLFGAEHANVQPHSGAQANMAVYFTV-----LEHG-----DTVLGMNLSHGGHLTHGSPVNFSGV-  134 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCTTTTCTTSHHHH-
T ss_pred             HHHHHHHHHHHHHHHHhCCCceEEEecCcHHHHHHHHHHh-----cCCC-----CEEEEecccccchhcccchhhhccc-
Confidence            344555    588888887765 44678899999999988     4567     999999998765532111  11110 


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      .......+....   ....|++++++++++.  +++++++++.+  .|...+    +++|.++|++||++||+||+|+ +
T Consensus       135 ~~~~~~~~~~~~---~~~~d~~~l~~~i~~~--~~~~v~~~~~~--~~~~~~----l~~i~~l~~~~~~~li~Dea~~-~  202 (405)
T 2vi8_A          135 QYNFVAYGVDPE---THVIDYDDVREKARLH--RPKLIVAAAAA--YPRIID----FAKFREIADEVGAYLMVDMAHI-A  202 (405)
T ss_dssp             HSEEEEECBCTT---TCSBCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTT-H
T ss_pred             eeEEEecccccc---cCCcCHHHHHHHHHhc--CCeEEEEeCCC--CCccCC----HHHHHHHHHHcCCEEEEEcccc-c
Confidence            001000000000   0112799999999853  46777775433  344445    9999999999999999999998 3


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCC-CHHHHHHHHHHHHHHhh---h
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGG-NPLASAVAIASLDVIRD---E  248 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~aa~~al~~~~~---~  248 (374)
                      +..+........ ..+|++  |+||+++|+. + |++++++++.+.+........++. +...++++.++++.+..   +
T Consensus       203 g~~~~~~~~~~~-~~~di~~~s~sK~~~g~~-g-G~~~~~~~~~~~l~~~~~~~~~~~~~~~~~aa~~~al~~~~~~~~~  279 (405)
T 2vi8_A          203 GLVAAGLHPNPV-PYAHFVTTTTHKTLRGPR-G-GMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFK  279 (405)
T ss_dssp             HHHHTTSSCCST-TTCSEEEEESSSTTCCCS-C-EEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHH
T ss_pred             cccccCcCCCcc-ccCCEEEEeccccCCCCC-C-eEEEEcHHHHHHHHhhhcccccCCCCHHHHHHHHHHHHHHHhhhHH
Confidence            222211111111 145665  8899998665 5 889999888777654322233333 55566666677776543   3


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------CC
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HD  318 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~  318 (374)
                      ++.++++++.+++.+.|+++  .+ .+.. ..+.+.++++.++...  .+..++.+.|.++||.++++          ..
T Consensus       280 ~~~~~~~~~~~~l~~~L~~~--g~-~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~g~~~~~~~~~~~~  353 (405)
T 2vi8_A          280 AYAKRVVDNAKRLASALQNE--GF-TLVS-GGTDNHLLLVDLRPQQ--LTGKTAEKVLDEVGITVNKNTIPYDPESPFVT  353 (405)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT--TC-EEGG-GSCSSSEEEEECGGGT--CCHHHHHHHHHHHTEECEEECCTTCSSCTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHhC--CC-eEec-CCCCceEEEEEccCCC--CCHHHHHHHHHHcCceeccCcCccccCCCCCC
Confidence            56777778888888887765  12 1111 1134678888876311  15778999999999999874          25


Q ss_pred             CEEEEecCC----CCCHHHHHHHHHHHHHHHhccCC
Q 017259          319 TIVRLTPPL----SISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       319 ~~lRi~~~~----~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      +++|++++.    ..+++++++++++|+++++ ++.
T Consensus       354 ~~iRis~~~~~~~~~~~~~i~~~~~~l~~~~~-~~~  388 (405)
T 2vi8_A          354 SGIRIGTAAVTTRGFGLEEMDEIAAIIGLVLK-NVG  388 (405)
T ss_dssp             SEEEEECHHHHHTTCCHHHHHHHHHHHHHHHT-CTT
T ss_pred             CceEEeeeeeeecCCCHHHHHHHHHHHHHHHh-ccc
Confidence            789999886    5789999999999999998 664

>3nmy_A Xometc, cystathionine gamma-lyase-like protein; Cys-Met metabolism PLP-dependent enzyme family, CYST gamma lyase, pyridoxal-phosphate; HET: PLP; 2.07A {Xanthomonas oryzae PV} SCOP: c.67.1.0 PDB: 3e6g_A* 3nnp_A*

Probab=99.90  E-value=7.6e-24  Score=198.83  Aligned_cols=288  Identities=15%  Similarity=0.103  Sum_probs=189.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-c
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-S   91 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~   91 (374)
                      +.++.+.++...+|+++|+++.+.+.+++++||++|++.+ ..+     .++|     |+|++.++.|++........ .
T Consensus        59 ~~y~r~~~p~~~~l~~~la~l~g~~~~~~~~sG~~Ai~~~-~~l-----~~~g-----d~Vi~~~~~y~~~~~~~~~~~~  127 (400)
T 3nmy_A           59 FEYSRTHNPTRFAYERCVAALEGGTRAFAFASGMAATSTV-MEL-----LDAG-----SHVVAMDDLYGGTFRLFERVRR  127 (400)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHH-HTT-----SCTT-----CEEEEESSCCHHHHHHHHHTHH
T ss_pred             cccccCCCHHHHHHHHHHHHHhCCCCEEEecCHHHHHHHH-HHH-----cCCC-----CEEEEeCCCchHHHHHHHHhhH
Confidence            4445577888999999999999989999999999999874 222     5677     99999999998655443322 0


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+||+|
T Consensus       128 ~~---------~g~~~~~v~~~d~~~l~~~i~---~~~~~v~~e~~~np~G~~~~----l~~i~~la~~~g~~livDe~~  191 (400)
T 3nmy_A          128 RT---------AGLDFSFVDLTDPAAFKAAIR---ADTKMVWIETPTNPMLKLVD----IAAIAVIARKHGLLTVVDNTF  191 (400)
T ss_dssp             HH---------HCCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             hh---------cCeEEEEECCCCHHHHHHHhc---cCCCEEEEECCCCCCCeeec----HHHHHHHHHHcCCEEEEECCC
Confidence            00         013455667779999999987   58999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEecccccC-Cccchhh--he-eCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSA--VL-ADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~--~~-~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      +... ...+   ..++.+..+.|++|.++| |. ++|+  ++ .++++.+.+...........+++.+..++..++.+. 
T Consensus       192 ~~~~-~~~~---~~~g~div~~S~sK~l~g~g~-~~gG~~vv~~~~~~~~~l~~~~~~~g~~~~~~~a~~~l~~l~~l~-  265 (400)
T 3nmy_A          192 ASPM-LQRP---LSLGADLVVHSATKYLNGHSD-MVGGIAVVGDNAELAEQMAFLQNSIGGVQGPFDSFLALRGLKTLP-  265 (400)
T ss_dssp             THHH-HCCG---GGGTCSEEEEETTTTTTCSSS-CCCEEEEECSCHHHHHHHHHHHHHHCCBCCHHHHHHHHHHHTTHH-
T ss_pred             cccc-cCCh---hhcCCcEEEecCccccCCCCC-cceeEEEEeCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHhHhHHH-
Confidence            7311 1111   112334445578999996 45 6655  33 466777776543333445667777777666665432 


Q ss_pred             hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE------------------EEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          248 EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV------------------RGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~------------------~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                       ...++..++..++.+.|++    .| .+..+                  ++.|.+++|+++...  .....+.+.|.-.
T Consensus       266 -~r~~~~~~~a~~l~~~L~~----~p-~v~~V~~p~l~~~~~~~~~~~~~~g~G~~~~~~l~~~~--~~~~~~~~~l~~~  337 (400)
T 3nmy_A          266 -LRMRAHCENALALAQWLET----HP-AIEKVIYPGLASHPQHVLAKRQMSGFGGIVSIVLKGGF--DAAKRFCEKTELF  337 (400)
T ss_dssp             -HHHHHHHHHHHHHHHHHTT----CT-TEEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEETTHH--HHHHHHHHHCSSS
T ss_pred             -HHHHHHHHHHHHHHHHHHc----CC-CEeEEECCCCCCCcCHHHHHHhCCCCCceEEEEeCCcH--HHHHHHHHcCCcc
Confidence             2345555566666655543    22 33222                  456889999986421  1344555555433


Q ss_pred             CeEec----------cC-----------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          310 GILAK----------PT-----------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       310 Gi~v~----------~~-----------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++.++          |.                 .++.+|++++...    .+.+++.|++++
T Consensus       338 ~~~~s~G~~~sl~~~p~~~~~~~~~~~~~~~~gi~~~liRlsvGle~----~~dli~dl~~al  396 (400)
T 3nmy_A          338 TLAESLGGVESLVNHPAVMTHASIPVARREQLGISDALVRLSVGIED----LGDLRGDLERAL  396 (400)
T ss_dssp             EECSCCCSSSCEEECTTTTTTTTSCHHHHHHHTCCTTEEEEECCSSC----HHHHHHHHHHHH
T ss_pred             eEecCCCCCcceeeCccccccccCCHHHHHhcCCCcCeEEEEeCcCC----HHHHHHHHHHHH
Confidence            32221          11                 2578999966544    344455555555

>2fq6_A Cystathionine beta-lyase; protein-inhibitor complex, PLP cofactor covalently bound to inhibitor; HET: P3F; 1.78A {Escherichia coli} SCOP: c.67.1.3 PDB: 2gqn_A* 1cl1_A* 1cl2_A*

Probab=99.90  E-value=3e-23  Score=195.48  Aligned_cols=299  Identities=9%  Similarity=-0.010  Sum_probs=195.9

Q ss_pred             ccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc
Q 017259           11 LTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM   90 (374)
Q Consensus        11 ~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~   90 (374)
                      ..+.++.+.++..++++++++++.|.+.+++++||++|++.+++.+     .++|     |+|++..+.|++........
T Consensus        72 ~~~~y~r~~~p~~~~le~~lA~l~g~~~~i~~ssGt~Ai~~al~~l-----~~~G-----d~Vi~~~~~y~~~~~~~~~~  141 (415)
T 2fq6_A           72 GELFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAF-----IEQG-----DHVLMTNTAYEPSQDFCSKI  141 (415)
T ss_dssp             TSCCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHTT-----CCTT-----CEEEEETTSCHHHHHHHHHT
T ss_pred             CCccccCCCCchHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHH
Confidence            3455666778899999999999999888888999999999998876     5677     99999999997754332111


Q ss_pred             cCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh--cCCEEEEe
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK--YNILMIAD  168 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~--~~i~li~D  168 (374)
                      ...         ....+..++.+|+++++++|+   +++++|++++++|++|.+.+    +++|.++|++  ||+++|+|
T Consensus       142 l~~---------~G~~v~~v~~~d~~~le~ai~---~~tklV~~e~~~NptG~v~d----l~~I~~la~~~~~g~~livD  205 (415)
T 2fq6_A          142 LSK---------LGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMID  205 (415)
T ss_dssp             GGG---------GTCEEEEECTTCGGGGGGGCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEE
T ss_pred             HHH---------cCcEEEEECCCCHHHHHHhhc---cCCcEEEEECCCCCCCEeec----HHHHHHHHHhhcCCCEEEEE
Confidence            100         113345556668999998887   57999999999999999998    9999999999  99999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ++|+... ...++     ....|++  |++|.+++ |...+|++++++++.+.+...........+++.+..+..+++.+
T Consensus       206 ~a~a~~~-~~~p~-----~~g~Div~~S~sK~lg~~g~~~~G~l~~~~~~~~~l~~~~~~~G~~~~~~~a~~~~~~l~~l  279 (415)
T 2fq6_A          206 NTWAAGV-LFKAL-----DFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTL  279 (415)
T ss_dssp             CTTTTTT-SSCGG-----GGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHHHH
T ss_pred             CCCcccc-cCCcc-----ccCCeEEEEeCccccCCCCCceEEEEEeCHHHHHHHHHHHHhcCCCCCHHHHHHHHhhhhHH
Confidence            9997321 11221     2345665  77799996 43146888888777666653221112234555555555556544


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          246 RDEKLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      .  ...++..++...+.+.|++...    .+|+...         ...+.+.+++|.++..........+.+.|...++.
T Consensus       280 ~--~r~~~~~~n~~~l~~~L~~~~~v~~v~~p~l~~~~~~~~~~~~~~~~g~i~sf~l~g~~~~~~~~~~l~~l~~~~~a  357 (415)
T 2fq6_A          280 G--VRLRQHHESSLKVAEWLAEHPQVARVNHPALPGSKGHEFWKRDFTGSSGLFSFVLKKKLNNEELANYLDNFSLFSMA  357 (415)
T ss_dssp             H--HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSTTSTTHHHHHHHCSCCCSEEEEEESSCCCHHHHHHHHTTCSSCEEC
T ss_pred             H--HHHHHHHHHHHHHHHHHHcCCCeeEEECCCCCCCccHHHHHhhCCCCceEEEEEECCCCCHHHHHHHHHhCCcCeEe
Confidence            2  2345555666666666655310    0111100         01135778888887520001344455544322322


Q ss_pred             ec------------c-----------C--CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          313 AK------------P-----------T--HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       313 v~------------~-----------~--~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++            |           .  ..+.+|++++...++++++.+.++|++
T Consensus       358 ~s~G~~~s~~~~~~p~~~s~~~~~~~~g~~~~~iRlS~G~e~~~d~i~~l~~al~~  413 (415)
T 2fq6_A          358 YSWGGYESLILANQPEHIAAIRPQGEIDFSGTLIRLHIGLEDVDDLIADLDAGFAR  413 (415)
T ss_dssp             SCCCSSSCEEEEECHHHHHTTCTTCCCCCCSCEEEEECCSSCHHHHHHHHHHHHHT
T ss_pred             ccCCCCceeEEecCCCccccccchhhcCCCCCEEEEEecCCCHHHHHHHHHHHHHh
Confidence            21            1           1  247999999998888888888887764

>3ecd_A Serine hydroxymethyltransferase 2; ssgcid, decode, bupsa00008A, one-carbon metabolism, pyridoxa phosphate, structural genomics; 1.60A {Burkholderia pseudomallei}

Probab=99.90  E-value=2.5e-22  Score=190.16  Aligned_cols=292  Identities=15%  Similarity=0.112  Sum_probs=179.9

Q ss_pred             cHHHHH-HHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcc-ccccc-ccCCcccc
Q 017259           22 KFPVFA-ERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT-LAAIS-MSCDNEAI   97 (374)
Q Consensus        22 ~~~~l~-~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~-~~~~~-~~~~~~~~   97 (374)
                      ..++++ +++++.++.+.. ++++||++|++.+++.+     ..+|     |+|++.+++|++.. ..... ..+. .+.
T Consensus        78 ~~~~~a~~~~~~~~~~~~~~v~~~~Gs~a~~~al~~~-----~~~g-----d~Vi~~~~~~~~~~~~~~~~~~~g~-~~~  146 (425)
T 3ecd_A           78 EVEALAIERVKRLFNAGHANVQPHSGAQANGAVMLAL-----AKPG-----DTVLGMSLDAGGHLTHGAKPALSGK-WFN  146 (425)
T ss_dssp             HHHHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECC-------------------CE
T ss_pred             HHHHHHHHHHHHHhCCCCceeecCchHHHHHHHHHHc-----cCCC-----CEEEEcccccccceecchhhhhccc-cee
Confidence            456665 777788888877 45999999999999988     5677     99999999998732 22211 1111 001


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLAR  176 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~  176 (374)
                      ....+...+.   -..|+++|++++++.  ++++++++++++  |...+    +++|.++|++||++||+||+|+ |+.+
T Consensus       147 ~~~~~~~~~~---~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~~~----l~~i~~l~~~~~~~li~De~~~~g~~~  215 (425)
T 3ecd_A          147 ALQYGVSRDT---MLIDYDQVEALAQQH--KPSLIIAGFSAY--PRKLD----FARFRAIADSVGAKLMVDMAHIAGVIA  215 (425)
T ss_dssp             EEEECCCTTT---SSCCHHHHHHHHHHH--CCSEEEEECSCC--CSCCC----HHHHHHHHHHHTCEEEEECGGGHHHHH
T ss_pred             eeecCCCccc---CccCHHHHHHHHhhc--CCcEEEEccccC--CCcCC----HHHHHHHHHHcCCEEEEECcChHhhhh
Confidence            0000100000   012799999999753  567888875443  44444    9999999999999999999975 4433


Q ss_pred             cccCcccccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHh-h--hc
Q 017259          177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIR-D--EK  249 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~-~--~~  249 (374)
                      .+......  . ..|++  |+||++ +|. ++||++++ +.+.+.+..... +...+.+...++++..++.... .  ++
T Consensus       216 ~~~~~~~~--~-~~di~~~s~sK~l-~g~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~  290 (425)
T 3ecd_A          216 AGRHANPV--E-HAHVVTSTTHKTL-RGP-RGGFVLTNDEEIAKKINSAVFPGLQGGPLMHVIAGKAVAFGEALTDDFKT  290 (425)
T ss_dssp             TTSSCCGG--G-TCSEEEEESSGGG-CCC-SCEEEEESCHHHHHHHHHHHC-----CCCHHHHHHHHHHHHHHTSHHHHH
T ss_pred             cccccCch--h-cCcEEEecCCccc-CCC-CcEEEEeCCHHHHHHHHhhhCccccCCccHHHHHHHHHHHHHHHHHhHHH
Confidence            33322111  1 14554  777999 556 78998887 566665543222 2222344445454454544332 2  25


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEecc-CCCchhHHHHHHHHHHCCeEec----cC------C
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDK-TALPVSAYDICLKMKERGILAK----PT------H  317 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~~Gi~v~----~~------~  317 (374)
                      +.++++++.+++.+.|++..     +... ..+.+.++++.++. ..   +...+.+.|.++||.++    |+      .
T Consensus       291 ~~~~~~~~~~~l~~~L~~~g-----~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~v~~~~~p~~~~~~~~  362 (425)
T 3ecd_A          291 YIDRVLANAQALGDVLKAGG-----VDLVTGGTDNHLLLVDLRPKGL---KGAQVEQALERAGITCNKNGIPFDPEKPTI  362 (425)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-----CEEGGGSCSSSEEEEECGGGTC---CHHHHHHHHHHTTEECEECCCTTCSSCTTT
T ss_pred             HHHHHHHHHHHHHHHHHhCC-----CeeccCCCCceEEEEEeCCCCC---CHHHHHHHHHHcCCEecccccCCCCCCCCC
Confidence            66777777888888777632     2111 11346677777753 22   57788889999999998    43      1


Q ss_pred             CCEEEEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259          318 DTIVRLTPPLS----ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 ~~~lRi~~~~~----~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+|++++..    .+++++++++++|+++++ ..
T Consensus       363 ~~~iRi~~~~~~~~~~~~e~i~~~~~~l~~~l~-~~  397 (425)
T 3ecd_A          363 TSGIRLGTPAGTTRGFGAAEFREVGRLILEVFE-AL  397 (425)
T ss_dssp             CSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             ccceeccchhheeccCCHHHHHHHHHHHHHHHh-cc
Confidence            35899996544    459999999999999998 54

>3ffr_A Phosphoserine aminotransferase SERC; structural genomics, JO center for structural genomics, JCSG, protein structure INI PSI-2; HET: LLP MSE P33; 1.75A {Cytophaga hutchinsonii atcc 33406}

Probab=99.90  E-value=3.9e-23  Score=191.40  Aligned_cols=275  Identities=10%  Similarity=0.036  Sum_probs=186.1

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc-cccccCCccc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA-AISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~-~~~~~~~~~~   96 (374)
                      +...++++++++++|.   +++++++||++|++.+++.+.         .+  +.+++..+.| +.... .....+    
T Consensus        43 ~~~~~~~~~la~~~g~~~~~~v~~~~g~t~al~~~~~~l~---------~~--~~i~~~~~~~-~~~~~~~~~~~g----  106 (362)
T 3ffr_A           43 EVYKTASDNLKTLLELPSNYEVLFLASATEIWERIIQNCV---------EK--KSFHCVNGSF-SKRFYEFAGELG----  106 (362)
T ss_dssp             HHHHHHHHHHHHHTTCCTTEEEEEESCHHHHHHHHHHHHC---------SS--EEEEEECSHH-HHHHHHHHHHTT----
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEEeCCchHHHHHHHHhcc---------CC--cEEEEcCcHH-HHHHHHHHHHhC----
Confidence            4566788888888754   469999999999999999883         11  4454554444 42111 111111    


Q ss_pred             cccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc-CCEEEEecc
Q 017259           97 IRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY-NILMIADEI  170 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~-~i~li~Dea  170 (374)
                              ..+..++.     .|+++++  +   .++++++++++++|++|.+.+    +++|.++|++| |+++|+|++
T Consensus       107 --------~~~~~v~~~~~~~~d~~~l~--~---~~~~~~v~~~~~~nptG~~~~----l~~i~~la~~~p~~~li~D~a  169 (362)
T 3ffr_A          107 --------REAYKEEAAFGKGFYPADIT--V---PADAEIICLTHNETSSGVSMP----VEDINTFRDKNKDALIFVDAV  169 (362)
T ss_dssp             --------CEEEEEECCTTCCCCGGGCC--C---CTTCCEEEEESEETTTTEECC----HHHHTTSGGGSTTSEEEEECT
T ss_pred             --------CCeEEEecCCCCCCCHHHHh--c---cCCccEEEEEcCCCCcceeCC----HHHHHHHHHhCCCCEEEEecc
Confidence                    11111111     1677776  2   267899999999999999998    99999999999 999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC---------------------CCC
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH---------------------GST  227 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~---------------------~~~  227 (374)
                      |+....   ....  ..  .|++  +++|+++++. ++|+++.++++.+.+.....                     ...
T Consensus       170 ~~~~~~---~~~~--~~--~d~~~~s~~K~~~~~~-G~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~~~~~  241 (362)
T 3ffr_A          170 SSLPYP---KFDW--TK--IDSVFFSVQKCFGLPA-GLGVWILNDRVIEKSKALLAKRKSIGTYHTIPSMLEKARVNQTP  241 (362)
T ss_dssp             TTTTSS---CCCT--TS--CSEEEEETTSTTCCCS-CCEEEEEEHHHHHHHHHHHHTTCCCCSTTSHHHHHHHHTTTCCS
T ss_pred             cccCCc---ccCh--hH--CcEEEEecccccCCCC-ceEEEEECHHHHHHhhhccccCCCCcccccHHHHHHHhhcCCCC
Confidence            973311   1111  11  4555  5669998555 56778888887666543211                     114


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE----EEEeeeEEEEeccCCCchhHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEV----RGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----~~~g~~~~~~~~~~~~~~~~~  300 (374)
                      ++.+..++.++.++++.+..+   ++.++.+++.+++.+.|+++    |++....    ...+.++++.+++     +..
T Consensus       242 ~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~-----~~~  312 (362)
T 3ffr_A          242 ETPNAMNIFLLGKVTGDMLQISADGIRKQTEEKAALINTYIESS----KVFSFGVEDAKLRSMTTIVANTTM-----LPG  312 (362)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHC----SSEEESSSCGGGBCSSEEEEEESS-----CHH
T ss_pred             CCchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHc----cCceeccCChhhcCCceEEEecCC-----CHH
Confidence            466777787888888866543   45566666666676666553    2221111    1235667777764     478


Q ss_pred             HHHHHHHHCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          301 DICLKMKERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++.+.|.++||.++++    ..+++|++++...+++++++++++|++++
T Consensus       313 ~~~~~l~~~gi~~~~g~~~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~  361 (362)
T 3ffr_A          313 EINKILEPFDMAVGAGYGSKKETQIRIANFPAHSLEQVHKLVQTLKEKI  361 (362)
T ss_dssp             HHHHHHGGGTEEEEECSGGGTTTEEEEECCTTSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHCCeEEecCccccCCCEEEEECCCCCCHHHHHHHHHHHHHHh
Confidence            9999999999999875    36899999998899999999999998764

>2ctz_A O-acetyl-L-homoserine sulfhydrylase; crystal, O-acetyl homoserine sulfhydrase, structural genomic structural genomics/proteomics initiative; HET: PLP; 2.60A {Thermus thermophilus} SCOP: c.67.1.3

Probab=99.90  E-value=7.6e-23  Score=193.72  Aligned_cols=288  Identities=18%  Similarity=0.139  Sum_probs=188.8

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++.+.++...+++++|+++++.+..++++||++|++.+++.+     .++|     |+|++..++||+.......+..
T Consensus        50 ~~y~~~~~~~~~~l~~~la~~~g~~~~v~~~sGt~A~~~~l~~~-----~~~g-----d~vi~~~~~~~~~~~~~~~~~~  119 (421)
T 2ctz_A           50 NIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTL-----AQAG-----DNIVSTPNLYGGTFNQFKVTLK  119 (421)
T ss_dssp             GSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSCCCHHHHHHHHTHHH
T ss_pred             CcccCCCChHHHHHHHHHHHHhCCCceEEecCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHH
Confidence            44445667788999999999998888888899999999999987     4567     9999999999886554421110


Q ss_pred             CccccccCCCCCCCceec-cCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      .         ....+..+ +.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++|
T Consensus       120 ~---------~g~~~~~~~~~~d~~~l~~~i~---~~~~~v~~~~~~n~~G~~~~----l~~i~~~a~~~g~~livD~~~  183 (421)
T 2ctz_A          120 R---------LGIEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNTF  183 (421)
T ss_dssp             H---------TTCEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECGG
T ss_pred             H---------cCCEEEEECCCCCHHHHHHhhc---cCCeEEEEECCCCCCCcccC----HHHHHHHHHHcCCEEEEECCc
Confidence            0         01234455 5568999999887   58999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC--H-HH----HhhcCCC---CCC-------------
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD--K-EV----MLCIQPG---EHG-------------  225 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~--~-~~----~~~~~~~---~~~-------------  225 (374)
                      ++++..+..+     +..+|++  |++|.+++ |. ++|+++..  + ++    .+.+.+.   .++             
T Consensus       184 ~~~g~~~~~~-----~~~~Di~~~s~~K~l~~~g~-~~G~~~~~~~~~~~~~~~~~~l~~~~~g~~g~~~~~~~~~~~~~  257 (421)
T 2ctz_A          184 GMGGYLLRPL-----AWGAALVTHSLTKWVGGHGA-VIAGAIVDGGNFPWEGGRYPLLTEPQPGYHGLRLTEAFGELAFI  257 (421)
T ss_dssp             GGGGTSCCGG-----GGTCSEEEEETTTTTTCSSC-CCCEEEEECSCSCCTTTTCHHHHSCBGGGTTBCHHHHHGGGHHH
T ss_pred             ccccccCCcc-----ccCCeEEEECCcccccCCCC-cEEEEEEeccchhhcccchhhhccccchhhhhhhhhhcchhHHH
Confidence            4344333322     2346776  78899996 66 88887663  1 22    1222211   111             


Q ss_pred             ----------CCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE----------------
Q 017259          226 ----------STFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV----------------  279 (374)
Q Consensus       226 ----------~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~----------------  279 (374)
                                .....+++.++++...++.+.  ...++..++.+++.+.|++.    |.+ ...                
T Consensus       258 ~~~r~~~~~~~g~~~~~~~a~~~~~~l~~l~--~r~~~~~~~a~~l~~~L~~~----p~v-~~v~~p~~~~~~~~~~~~~  330 (421)
T 2ctz_A          258 VKARVDGLRDQGQALGPFEAWVVLLGMETLS--LRAERHVENTLHLAHWLLEQ----PQV-AWVNYPGLPHHPHHDRAQK  330 (421)
T ss_dssp             HHHHHTHHHHHCCCCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHHTC----TTE-EEEECTTSTTCTTHHHHHH
T ss_pred             HHHHHHHHHhcCCCCCHHHHHHHHcCcchHH--HHHHHHHHhHHHHHHHHHhC----CCe-eEEECCCCCCCCCHHHHHH
Confidence                      112446666666666555432  22444445666666666543    222 111                


Q ss_pred             ---EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC---------------------------CCCEEEEecCCCC
Q 017259          280 ---RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSI  329 (374)
Q Consensus       280 ---~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~---------------------------~~~~lRi~~~~~~  329 (374)
                         ++.+.++.|.++...  .....+.+.|...++.++.+                           .++.+|++++.  
T Consensus       331 ~~~~~~g~ivsf~l~~~~--~~~~~~~~~l~~~~~~~~~G~~~sl~~~~~~~~h~~~~~~~~~~~g~~~~~vRlS~g~--  406 (421)
T 2ctz_A          331 YFKGKPGAVLTFGLKGGY--EAAKRFISRLKLISHLANVGDTRTLAIHPASTTHSQLSPEEQAQAGVSPEMVRLSVGL--  406 (421)
T ss_dssp             HHTTCCCSEEEEEETTHH--HHHHHHHHTCSSSEECSCCCCSSCEEECGGGTTTTTSCHHHHHHHTCCTTEEEEECCS--
T ss_pred             hccCCCceEEEEEeCCCH--HHHHHHHHhCCcceecccCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEeCC--
Confidence               356788888886420  13444555544333333211                           14799999554  


Q ss_pred             CHHHHHHHHHHHHHHH
Q 017259          330 SSNELQEGSKALHDVL  345 (374)
Q Consensus       330 ~~e~i~~~~~~l~~~~  345 (374)
                        ++++.+++.|++++
T Consensus       407 --e~~~~li~~l~~al  420 (421)
T 2ctz_A          407 --EHVEDLKAELKEAL  420 (421)
T ss_dssp             --SCHHHHHHHHHHHT
T ss_pred             --CCHHHHHHHHHHHh
Confidence              57777788777765

>3h7f_A Serine hydroxymethyltransferase 1; cytoplasm, one-carbon metabolism, pyridoxal phosphate, structural genomics; HET: LLP; 1.50A {Mycobacterium tuberculosis}

Probab=99.90  E-value=2.6e-22  Score=191.59  Aligned_cols=296  Identities=15%  Similarity=0.131  Sum_probs=186.3

Q ss_pred             HHHH-HHHhcccCCCeEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc--cccCCcccccc
Q 017259           24 PVFA-ERLTSMFGYDMVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI--SMSCDNEAIRG   99 (374)
Q Consensus        24 ~~l~-~~l~~~~~~~~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~--~~~~~~~~~~~   99 (374)
                      ++++ +++++++|.+.+.+ ++||++|++.+++++     .++|     |+|++.+++|+++.....  ...+. .+...
T Consensus        93 e~~a~~~la~~~g~~~~~v~~~sGs~a~~~a~~~~-----~~~G-----d~Vl~~~~~~~~~~~~~~~~~~~g~-~~~~~  161 (447)
T 3h7f_A           93 ENLARDRAKALFGAEFANVQPHSGAQANAAVLHAL-----MSPG-----ERLLGLDLANGGHLTHGMRLNFSGK-LYENG  161 (447)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCGGGTCTTSHHHH-SSEEE
T ss_pred             HHHHHHHHHHHcCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEecCcccccccchhhhhhhcCC-eeEEE
Confidence            5566 88999889988777 999999999999988     5677     999999999877322211  11110 01100


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSG  178 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g  178 (374)
                      ..+...+.   -..|++++++++++.  ++++++++.+.++++.  +    +++|.++|++||++||+||+|+ |+...|
T Consensus       162 ~~~~~~~~---~~~d~~~l~~~i~~~--~~~~i~~~~~~~~~~~--~----l~~i~~l~~~~g~lli~Dea~~~g~~~~g  230 (447)
T 3h7f_A          162 FYGVDPAT---HLIDMDAVRATALEF--RPKVIIAGWSAYPRVL--D----FAAFRSIADEVGAKLLVDMAHFAGLVAAG  230 (447)
T ss_dssp             EECCCTTT---CSCCHHHHHHHHHHH--CCSEEEEECSSCCSCC--C----HHHHHHHHHHHTCEEEEECTTTHHHHHTT
T ss_pred             EcCcCccc---CCcCHHHHHHHHHhc--CCeEEEEcCCCCCCcc--C----HHHHHHHHHHcCCEEEEECCchhhhhcCC
Confidence            00111000   013899999999754  4567777554444433  4    9999999999999999999975 443333


Q ss_pred             cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCC-CCHHHHHHHHHHHHHHhh---hcHHH
Q 017259          179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFG-GNPLASAVAIASLDVIRD---EKLAE  252 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~aa~~al~~~~~---~~~~~  252 (374)
                      .....  .. ..|++  |+||+++ |+ ++|++++++++.+.+.......+++ ++...++++.+++..+..   +++.+
T Consensus       231 ~~~~~--~~-~~di~~~s~sK~l~-G~-~gG~i~~~~~~~~~l~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~  305 (447)
T 3h7f_A          231 LHPSP--VP-HADVVSTTVHKTLG-GG-RSGLIVGKQQYAKAINSAVFPGQQGGPLMHVIAGKAVALKIAATPEFADRQR  305 (447)
T ss_dssp             SSCCS--TT-TCSEEEEESSGGGC-CC-SCEEEEECGGGHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             CCCCC--CC-CCcEEEecCCcCCC-CC-CeEEEEECHHHHHHHhhhcCCcccCCccHHHHHHHHHHHHHhhCHHHHHHHH
Confidence            22111  11 23554  7789985 66 8899999988777765432222332 334445555555555433   24667


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec----cC------CCCEE
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK----PT------HDTIV  321 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~----~~------~~~~l  321 (374)
                      ++.++.+++.+.|++.....+++.... ...+.++++++....  .+...+.+.|.++||.+.    +.      .++++
T Consensus       306 ~~~~~~~~l~~~L~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~GI~v~~~~i~~~~~~p~~~~~l  383 (447)
T 3h7f_A          306 RTLSGARIIADRLMAPDVAKAGVSVVSGGTDVHLVLVDLRDSP--LDGQAAEDLLHEVGITVNRNAVPNDPRPPMVTSGL  383 (447)
T ss_dssp             HHHHHHHHHHHHHTSHHHHHTTCEEGGGSCSSSEEEEECTTSS--CCHHHHHHHHHHTTEECBC-------------CEE
T ss_pred             HHHHHHHHHHHHHHhccccCCCeEEecCCCCCCEEEEEcCCCC--CCHHHHHHHHHHCCeEEecccCCCCCCCCCCCCce
Confidence            777888888888766511111111101 123456676664321  145667777777899988    33      35789


Q ss_pred             EEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259          322 RLTPPLS----ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       322 Ri~~~~~----~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||+++..    .++++++++++.|+++++ ..
T Consensus       384 Rig~~~~~~~~~~~eei~~~~~~l~~~l~-~~  414 (447)
T 3h7f_A          384 RIGTPALATRGFGDTEFTEVADIIATALA-TG  414 (447)
T ss_dssp             EEECHHHHHHTCCHHHHHHHHHHHHHHHH-SG
T ss_pred             eccCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence            9987654    679999999999999997 54

>4h51_A Aspartate aminotransferase; ssgcid, structural genomics, seattle struc genomics center for infectious disease, aspartate aminotran transferase; HET: LLP; 1.85A {Leishmania major}

Probab=99.89  E-value=1.8e-22  Score=189.75  Aligned_cols=305  Identities=11%  Similarity=0.073  Sum_probs=188.8

Q ss_pred             CCCcHHHHHHHHhccc-CC------CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           19 YNDKFPVFAERLTSMF-GY------DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~-~~------~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +.....+|.+.+++++ |.      ...+.|.+||.|+..++..+.... ..+|     |+|++++|+|..+.......+
T Consensus        85 p~~G~p~lr~aia~~~~g~~~~~~~~~~~qt~ggtga~~~a~~~l~~~~-~~pg-----d~V~ip~P~w~~y~~i~~~aG  158 (420)
T 4h51_A           85 PISGYQPFIDEAVKIIYGNTVELENLVAVQTLSGTGAVSLGAKLLTRVF-DAET-----TPIYLSDPTWPNHYGVVKAAG  158 (420)
T ss_dssp             CTTCCHHHHHHHHHHHHC---CGGGEEEEEEEHHHHHHHHHHHHHTTTS-CTTT-----SCEEEEESCCTHHHHHHHHTT
T ss_pred             CcCChHHHHHHHHHHhcCCCccccccceeeecCchHHHHHHHHHHHHhc-CCCC-----CEEEEecCCchhHHHHHHHcC
Confidence            3445556666666543 21      234668999999998888775432 5677     999999999976665555544


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..+.....+... ....    .|.+.+.+.++..++++++++.++++||||... +++.+++|.++|+++++++|+||+|
T Consensus       159 ~~~V~~~~~~~~-~~~~----~d~~~~~~~l~~~~~~~~vll~~~p~NPtG~~~-~~~~~~~i~~~~~~~~~~~~~D~~Y  232 (420)
T 4h51_A          159 WKNICTYAYYDP-KTVS----LNFEGMKKDILAAPDGSVFILHQCAHNPTGVDP-SQEQWNEIASLMLAKHHQVFFDSAY  232 (420)
T ss_dssp             CCCEEEEECEEG-GGTE----ECHHHHHHHHHHSCSSCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESC
T ss_pred             CeEEEeeccccc-cccC----CCHHHHHHHHhccCCCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHHHhcCceEeeehhh
Confidence            332211000000 0000    167888888887777888999999999999777 9999999999999999999999999


Q ss_pred             cCCcccccC---cccc-cCCCCCc---EEEeccccc-CCccchhhheeCHHHHhh-------cCCCCCCCCCCCCHHHHH
Q 017259          172 SGLARSGRM---LASD-WEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASA  236 (374)
Q Consensus       172 ~~~~~~g~~---~~~~-~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~  236 (374)
                      .+|.+.+..   +... ..+....   +.||||.++ .|+ |+||+++..+..+.       +.........+++..++.
T Consensus       233 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~l~~~~r~~~s~~p~~~a~  311 (420)
T 4h51_A          233 QGYASGSLDTDAYAARLFARRGIEVLLAQSFSKNMGLYSE-RAGTLSLLLKDKTKRADVKSVMDSLIREEYTCPPAHGAR  311 (420)
T ss_dssp             TTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSCHHHHHHHHHHHHHHHHTTTSSCCHHHHH
T ss_pred             hhhccCCcccchHHHHhHHhhCceEEEEeccccccccccC-ceEEEEecccCHHHHHHHHHHHHHhhhcccCcchHHHHH
Confidence            988654321   1111 1112222   349999999 599 99998764332222       211112233455666666


Q ss_pred             HHHHHHHH------Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          237 VAIASLDV------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       237 aa~~al~~------~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      ++...+..      ++.  +.+.++++++++.+.+.|++++... ....-.+..|.|.+..+       +. +.++.|.+
T Consensus       312 ~~~~~l~d~~l~~~~~~~~~~m~~r~~~~R~~l~~~L~~~g~~~-~~~~i~~q~GmF~~~gl-------s~-e~v~~L~e  382 (420)
T 4h51_A          312 LAHLILSNNELRKEWEAELSAMAERIRTMRRTVYDELLRLQTPG-SWEHVINQIGMFSFLGL-------SK-AQCEYCQN  382 (420)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCSS-CCTHHHHCCSSEEECCC-------CH-HHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-CCCeecCCCceEEecCc-------CH-HHHHHHHh
Confidence            65555432      111  1344555556666666665543110 00001233466655322       22 44678889


Q ss_pred             CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          309 RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       309 ~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      +||++.+++    ||++. ..+++.+++++++|.++++ .+.+
T Consensus       383 ~~Vy~~~~g----Ris~A-gl~~~ni~~~a~aI~~vvr-~i~r  419 (420)
T 4h51_A          383 HNIFITVSG----RANMA-GLTHETALMLAQTINDAVR-NVNR  419 (420)
T ss_dssp             TTEECCTTC----EEEGG-GCCHHHHHHHHHHHHHHHC-----
T ss_pred             CCEEEcCCC----EEEec-cCCHHHHHHHHHHHHHHHH-Hhhc
Confidence            999998875    99854 3588999999999999998 6543

>3ri6_A O-acetylhomoserine sulfhydrylase; PYR 5'-phosphate, gamma-elimination, direct sulfhydrylation, CY metabolism, protein thiocarboxylate, TR; 2.20A {Wolinella succinogenes}

Probab=99.89  E-value=1.2e-22  Score=192.08  Aligned_cols=289  Identities=17%  Similarity=0.135  Sum_probs=182.8

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.++.+.++...+|++++++++|.+..++++||++|+..+++.+     .++|     |+|++.++.|++.........
T Consensus        73 ~~~y~r~~~p~~~~le~~lA~l~g~~~~v~~~sG~~Ai~~al~al-----~~~G-----d~Vi~~~~~y~~~~~~~~~~~  142 (430)
T 3ri6_A           73 GHVYSRSSNPTVEDLEQRLKNLTGALGVLALGSGMAAISTAILTL-----ARAG-----DSVVTTDRLFGHTLSLFQKTL  142 (430)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHTHH
T ss_pred             CccccCCCCHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEcCCCchhHHHHHHHHH
Confidence            344556778899999999999999999999999999999999988     5677     999999999977554221110


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..         ....+..++.+|+++++++++   ++++++++++++|++|.+.+    +++|.++|++||+++|+|++|
T Consensus       143 ~~---------~G~~~~~v~~~d~~~l~~ai~---~~t~~v~~e~p~NptG~~~d----l~~i~~la~~~g~~livD~a~  206 (430)
T 3ri6_A          143 PS---------FGIEVRFVDVMDSLAVEHACD---ETTKLLFLETISNPQLQVAD----LEALSKVVHAKGIPLVVDTTM  206 (430)
T ss_dssp             HH---------TTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTT
T ss_pred             HH---------cCCEEEEeCCCCHHHHHHhhC---CCCeEEEEECCCCCCCeecC----HHHHHHHHHHcCCEEEEECCC
Confidence            00         113455666679999999887   58999999999999999998    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEecccccC-Cccchhhhee--CH-HH------------------HhhcCC-CCCCCCC
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLA--DK-EV------------------MLCIQP-GEHGSTF  228 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~--~~-~~------------------~~~~~~-~~~~~~~  228 (374)
                      +....    ......+.+..+.|++|.++| |. .+|+++.  .+ .+                  ....+. .......
T Consensus       207 ~~~~~----~~~~~~g~div~~S~sK~l~g~g~-~~gG~vv~~~~~~~~~~~~~~~l~~~~g~~~~i~~~~~~~~~~~g~  281 (430)
T 3ri6_A          207 TPPYL----LEAKRLGVDIEVLSSTKFISGGGT-SVGGVLIDHGLFEWKSLPSLAPYYAKAGPMAFLYKARKEVFQNLGP  281 (430)
T ss_dssp             SCTTT----CCGGGGTCSEEEEECCCEEETTEE-ECCEEEEECSCSCGGGSTTTHHHHHHHGGGHHHHHHHHTHHHHHCC
T ss_pred             ccccc----CChHHcCCEEEEECCcccccCCCC-ceEEEEEECChHHhhhccchhhhhhhhchhhHHHHHHHHHHHhcCC
Confidence            73211    111223333334588899986 44 4455433  21 11                  111110 0011122


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-----------------EEee-eEEEEe
Q 017259          229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-----------------GRGL-FNAVEF  290 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-----------------~~g~-~~~~~~  290 (374)
                      ..+++.+..++..++.+..  ..++..++..++.+.|++    .| .+..+.                 +.|. +++|++
T Consensus       282 ~~~~~~a~l~l~~l~~l~~--r~~~~~~na~~la~~L~~----~p-~v~~V~~P~l~~~p~~~~~~~~~g~Gg~~lsf~l  354 (430)
T 3ri6_A          282 SLSPHNAYLQSLGLETMAL--RIERSCQNAQELAHWLLS----IP-QVKCVNHPSLPDSPFYAIAKRQFRYAGSILTFEL  354 (430)
T ss_dssp             CCCHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHTT----CT-TCEEEECTTSTTSTTHHHHHHHCSSCCSEEEEEC
T ss_pred             CCCHHHHHHHHhhhhhHHH--HHHHHHHHHHHHHHHHhC----CC-CccEEECCCCCCCccHHHHHHhCCCCceEEEEEE
Confidence            3466666555555554422  244555566666665543    23 222221                 2256 999998


Q ss_pred             ccCCCchhHHHHHHHHHHCCeEeccC---------------------------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          291 DKTALPVSAYDICLKMKERGILAKPT---------------------------HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~l~~~Gi~v~~~---------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ++.   ....+|.+.|...++.++.+                           .++.||++++    .|+.+.+++.|++
T Consensus       355 ~~~---~~~~~~~~~l~~~~~~~s~G~~~sli~~p~~~~h~~~~~~~~~~~g~~~~liRlsvG----~E~~~dl~~dl~~  427 (430)
T 3ri6_A          355 ESK---EASYRFMDALKLIRRATNIHDNKSLILSPYHVIYALNSHEERLKLEISPAMMRLSVG----IEEIEDLKEDILQ  427 (430)
T ss_dssp             SSH---HHHHHHHHHCSSSEECSCCSCSSCEEECTGGGC---------CGGGSCTTEEEEECC----SSCHHHHHHHHHH
T ss_pred             CCH---HHHHHHHHhCCcceecCCCCCCCceeeCCcccccccCCHHHHHhcCCCCCeEEEEec----cCCHHHHHHHHHH
Confidence            732   25666777766554433221                           2578999954    3555666677766


Q ss_pred             HH
Q 017259          344 VL  345 (374)
Q Consensus       344 ~~  345 (374)
                      ++
T Consensus       428 al  429 (430)
T 3ri6_A          428 AL  429 (430)
T ss_dssp             HH
T ss_pred             hh
Confidence            65

>2qma_A Diaminobutyrate-pyruvate transaminase and L-2,4- diaminobutyrate decarboxylase; structural genomics, APC91511.1, glutamate decarboxylase; HET: MSE; 1.81A {Vibrio parahaemolyticus}

Probab=99.89  E-value=1.4e-21  Score=189.08  Aligned_cols=303  Identities=14%  Similarity=0.096  Sum_probs=185.6

Q ss_pred             HHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccc--------cccCCC--CccEEEEeccCCCCcccccccccC
Q 017259           26 FAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYV--------KKKFSI--DEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        26 l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~--------~~G~~~--~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++|++++|.   +.+++|+|||+|++.++.+++.+...        .+|.+.  ++.+|++..++|+.. ..+....+
T Consensus       145 ~~~~la~~~g~~~~~~~~~t~ggt~a~~~al~~ar~~~~~~~~~~~~~~~G~~~~~g~~~v~~s~~~h~s~-~~~~~~~g  223 (497)
T 2qma_A          145 VVNWLCDKYDLSEKADGIFTSGGTQSNQMGLMLARDWIADKLSGHSIQKLGLPDYADKLRIVCSKKSHFTV-QKSASWMG  223 (497)
T ss_dssp             HHHHHHHHTTCCTTCEEEEESSHHHHHHHHHHHHHHHHHHHHHCCCHHHHCSCGGGGGEEEEEETTSCTHH-HHHHHHTT
T ss_pred             HHHHHHHHhCCCCCCCeEEcCCchHHHHHHHHHHHHHHHHhhcccchhhcccccccCCeEEEECCCchHHH-HHHHHHcC
Confidence            45558888876   68999999999999999987542100        133211  122777777665443 33322222


Q ss_pred             CccccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259           93 DNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL  164 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~  164 (374)
                      .+.         ..+..++.+     |+++|+++|++.   +.++.+++++.+.+++|.+.+    +++|.++|++||++
T Consensus       224 ~g~---------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~~~~~~~vv~~~~~~~tG~~~~----l~~I~~l~~~~~~~  290 (497)
T 2qma_A          224 LGE---------KAVMTVDANADGTMDITKLDEVIAQAKAEGLIPFAIVGTAGTTDHGAIDD----LDFIADMAVKHDMW  290 (497)
T ss_dssp             SCG---------GGEEEECBCTTSSBCGGGHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCE
T ss_pred             CCc---------ccEEEEecCCCCcCCHHHHHHHHHHHHHCCCcceEEEEcCCCCCCCCCCC----HHHHHHHHHHcCCE
Confidence            110         012223332     789999998753   122557888778888998888    99999999999999


Q ss_pred             EEEeccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCH-HHHhhcCCCCCC----CCCCCCHHH--
Q 017259          165 MIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADK-EVMLCIQPGEHG----STFGGNPLA--  234 (374)
Q Consensus       165 li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~-~~~~~~~~~~~~----~~~~~~~~~--  234 (374)
                      +++|++|+++..... +.....++ .+|++++  +|++++++ ++|+++.++ ..++.+......    .+..++...  
T Consensus       291 l~vD~a~~~~~~~~~-~~~~~~gi~~~D~i~~s~hK~l~~p~-~~G~l~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~  368 (497)
T 2qma_A          291 MHVDGAYGGALILSS-HKSRLKGVERAHSISVDFHKLFYQTI-SCGALLVNDKSNFKFLLHHADYLNREHDELPNLVDKS  368 (497)
T ss_dssp             EEEEETTGGGGGGST-TGGGGTTGGGCSEEEEETTTTTCCCS-SCEEEEESCGGGGGGGCC-------------------
T ss_pred             EEEehhhhHHHHhCc-chHhhcCcccCCEEEEcchhccCCCc-ceEEEEEeCHHHHHHhcCCchhcCCccccCCCccccC
Confidence            999999997644333 22223344 6677755  79999888 999988764 334444321000    000011111  


Q ss_pred             --------HHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCc--hhHHH
Q 017259          235 --------SAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALP--VSAYD  301 (374)
Q Consensus       235 --------~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~--~~~~~  301 (374)
                              ..+..++++.+..+   ++.++..++.+++.+.|++.    |++....++...+++|.+......  ....+
T Consensus       369 ~~~~r~~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v~f~~~~~~~~~~~l~~~  444 (497)
T 2qma_A          369 IATTKRFDALKVFMTMQNVGPKALGDMYDHLLAQTLEVADMIRTN----DQFELLAEPSLSTVLFRATHETADLDELNKA  444 (497)
T ss_dssp             -CCSCCCTHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHTC----TTEEECSCCSSSEEEEEECCSSSCHHHHHHH
T ss_pred             CCCCCchhHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhhC----CCeEEEcCCCceEEEEEEcCCccCHHHHHHH
Confidence                    12233445544333   45566666667776666543    222211233456777776432100  11346


Q ss_pred             HHHHHHHCCeEeccC----CCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          302 ICLKMKERGILAKPT----HDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       302 ~~~~l~~~Gi~v~~~----~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.+.|.++|+.+.+.    +.+++|+++ +..++++++++++++|+++++ ++
T Consensus       445 l~~~l~~~G~~~~~~~~~~g~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~  496 (497)
T 2qma_A          445 LRLEALTRGIAVLGETIVDGKTALKFTILNPCLTTSDFESLLSKINMLAV-EL  496 (497)
T ss_dssp             HHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHhCCCEEEEeeEECCEEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence            778889999888642    346899997 788999999999999999987 54

>3gbx_A Serine hydroxymethyltransferase; structural genomics, IDP01011, serine hydroxymethyltransfera salmonella typhimurium.; HET: MSE; 1.80A {Salmonella typhimurium} SCOP: c.67.1.4 PDB: 1dfo_A* 3g8m_A* 1eqb_A*

Probab=99.89  E-value=7.5e-22  Score=186.64  Aligned_cols=288  Identities=13%  Similarity=0.114  Sum_probs=177.0

Q ss_pred             HHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccccccCCC
Q 017259           26 FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEAIRGFGP  102 (374)
Q Consensus        26 l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~~~~~~~  102 (374)
                      .++++++.++.+.. ++++||++|++.+++.+     .++|     |+|++..++|++.......  ..+.......+ +
T Consensus        81 ~~~~la~~~~~~~~~v~~~sGs~a~~~a~~~~-----~~~g-----d~v~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~  149 (420)
T 3gbx_A           81 AIDRAKELFGADYANVQPHSGSQANFAVYTAL-----LQPG-----DTVLGMNLAQGGHLTHGSPVNFSGKLYNIVPY-G  149 (420)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEEEEC------------CHHHHSEEEEE-E
T ss_pred             HHHHHHHHhCCCCceeEecCcHHHHHHHHHHh-----cCCC-----CEEEecchhhcceeccchhhhhcccceeEEec-c
Confidence            33678888887754 44678899999999888     5677     9999999997653311111  11100000000 0


Q ss_pred             CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCc
Q 017259          103 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML  181 (374)
Q Consensus       103 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~  181 (374)
                          ...--..|+++|+++++++  ++++++++++++  |...+    +++|.++|++||++||+||+|+ ++.+.+...
T Consensus       150 ----~~~~~~~d~~~l~~~i~~~--~~~~v~~~~~~~--~~~~~----l~~l~~l~~~~~~~li~De~~~~~~~~~~~~~  217 (420)
T 3gbx_A          150 ----IDESGKIDYDEMAKLAKEH--KPKMIIGGFSAY--SGVVD----WAKMREIADSIGAYLFVDMAHVAGLIAAGVYP  217 (420)
T ss_dssp             ----ECTTCSCCHHHHHHHHHHH--CCSEEEECCTTC--CSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHTTSSC
T ss_pred             ----CCccCCcCHHHHHHHHHhc--CCeEEEEecCcc--CCccC----HHHHHHHHHHcCCEEEEECCcchhceecccCC
Confidence                0000013899999999854  477888865443  34555    9999999999999999999986 443333221


Q ss_pred             ccccCCCCCcEE--EecccccCCccchhhheeCH---HHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhh---hcHHH
Q 017259          182 ASDWEEVRPDMV--ILGKALGGGVIPVSAVLADK---EVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD---EKLAE  252 (374)
Q Consensus       182 ~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~---~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~~~~---~~~~~  252 (374)
                      .  ... .+|++  |+||+++ |. ++|++++++   ++.+.+.......++ .++...++++..++.....   +++.+
T Consensus       218 ~--~~~-~~di~~~s~sK~~~-g~-~gg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~a~~~~~~~~~~~~~~  292 (420)
T 3gbx_A          218 N--PVP-HAHVVTTTTHKTLA-GP-RGGLILAKGGDEELYKKLNSAVFPSAQGGPLMHVIAGKAVALKEAMEPEFKVYQQ  292 (420)
T ss_dssp             C--STT-TSSEEEEESSGGGC-SC-SCEEEEESSCCHHHHHHHHHHHC----CCCCHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             c--ccc-cCCEEEeecccCCC-CC-CceEEEEcCCcHHHHHHhhhhcCCCCCCCcchhHHHHHHHHHHHHHhHhHHHHHH
Confidence            1  111 26766  5779997 44 568888886   676666543222222 2334444444445543322   24567


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc-------C---CCCEE
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP-------T---HDTIV  321 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~-------~---~~~~l  321 (374)
                      +++++.+++.+.|++.     ++... ....+.++++.++...  .+...+.+.|.++||.+.+       +   ..+.+
T Consensus       293 ~~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~i  365 (420)
T 3gbx_A          293 QVAKNAKAMVEVFLNR-----GYKVVSGGTENHLFLLDLVDKN--LTGKEADAALGRANITVNKNSVPNDPKSPFVTSGI  365 (420)
T ss_dssp             HHHHHHHHHHHHHHHT-----TCEEGGGSCSSSEEEEECGGGT--CCHHHHHHHHHHTTEECEEECCTTCSSCTTTCSEE
T ss_pred             HHHHHHHHHHHHHHhc-----CCeeccCCCCCeEEEEEcCCCC--CCHHHHHHHHHHCCcEeccccCCCCccccCCCcce
Confidence            7777788887777663     22111 1134667777765321  1577888889899999987       2   24679


Q ss_pred             EEecCCC----CCHHHHHHHHHHHHHHHhccC
Q 017259          322 RLTPPLS----ISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       322 Ri~~~~~----~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||+++..    .+++++++++++|+++++ +.
T Consensus       366 Ri~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~  396 (420)
T 3gbx_A          366 RIGSPAVTRRGFKEAEVKELAGWMCDVLD-NI  396 (420)
T ss_dssp             EEECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             EEecchhcccCCCHHHHHHHHHHHHHHHh-Cc
Confidence            9997654    568999999999999998 54

>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate aminotransferase, colitose, perosamine, O-antigen, pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli} PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*

Probab=99.89  E-value=6.9e-22  Score=185.31  Aligned_cols=299  Identities=12%  Similarity=0.103  Sum_probs=194.4

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcc--cccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG--YVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~--~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+++..+.+    ++.+...++++.++++++.+++++++||++|++.+++.++...  ...+|     ++|++..++
T Consensus        19 ~a~~~~~~~~~~----~~~~~~~~l~~~la~~~~~~~~i~~~sGt~a~~~al~~~~~~~~~~~~~g-----~~Vi~~~~~   89 (390)
T 3b8x_A           19 KAIQSVLDSKMF----TMGEYVKQYETQFAKTFGSKYAVMVSSGSTANLLMIAALFFTKKPRLKKG-----DEIIVPAVS   89 (390)
T ss_dssp             HHHHHHHHHTCC----SSCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHTTSSSSCSCCTT-----CEEEEESSS
T ss_pred             HHHHHHHHcCCC----CCChHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHHhhhhcCCCCc-----CEEEECCCC
Confidence            455666655433    3467888999999999998899999999999999998873100  03445     899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      |++....+...+....+.    +...+    .+. |+++++++++   ++++++++.+   ++|...+    +++|.++|
T Consensus        90 ~~~~~~~~~~~g~~~~~~----~~~~~----~~~~d~~~l~~~i~---~~~~~v~~~~---~~g~~~~----~~~i~~l~  151 (390)
T 3b8x_A           90 WSTTYYPLQQYGLRVKFV----DIDIN----TLNIDIESLKEAVT---DSTKAILTVN---LLGNPNN----FDEINKII  151 (390)
T ss_dssp             CHHHHHHHHHTTCEEEEE----CBCTT----TCSBCHHHHHHHCC---TTEEEEEEEC---GGGCCCC----HHHHHHHH
T ss_pred             cHHHHHHHHHcCCEEEEE----ecCcc----ccCcCHHHHHHHhC---cCCeEEEEEC---CccChhh----HHHHHHHH
Confidence            988766544332221111    11010    011 7899998886   4788888864   2354555    99999999


Q ss_pred             HhcCCEEEEecccc-CCcccccCcccccCCCCCcEEEeccccc----CCccchhhheeCH-HHHhhc---CCCC------
Q 017259          159 SKYNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILGKALG----GGVIPVSAVLADK-EVMLCI---QPGE------  223 (374)
Q Consensus       159 ~~~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~sK~~~----~G~~~~G~~~~~~-~~~~~~---~~~~------  223 (374)
                      ++||+++|+|++|+ |....     ...++..+++.++||..+    +|  .+|+++.++ ++.+.+   ....      
T Consensus       152 ~~~~~~li~D~a~~~g~~~~-----~~~~g~~~~~~~~s~~~~k~~~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~~  224 (390)
T 3b8x_A          152 GGRDIILLEDNCESMGATFN-----NKCAGTFGLMGTFSSFYSNHIATM--EGGCIVTDDEEIYHILLCIRAHGWTRNLP  224 (390)
T ss_dssp             TTSCCEEEEECTTCTTCEET-----TEETTSSSSEEEEECCTTSSSCSS--SCEEEEESCHHHHHHHHHHTBTTBSTTSC
T ss_pred             HHcCCEEEEECcCcccCEEC-----CcccccccceEEEEccCCCCCccC--CceEEEeCCHHHHHHHHHHHhcCCCcccc
Confidence            99999999999998 33221     123455668888876443    33  247777765 554432   2111      


Q ss_pred             ----------------------CCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--
Q 017259          224 ----------------------HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--  279 (374)
Q Consensus       224 ----------------------~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--  279 (374)
                                            .+.++..+.+.+++++++++.++  ++.++.+++.+++.+.|+++    |++....  
T Consensus       225 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~aa~~l~~l~~l~--~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~  298 (390)
T 3b8x_A          225 KKNKVTGVKSDDQFEESFKFVLPGYNVRPLEMSGAIGIEQLKKLP--RFISVRRKNAEYFLDKFKDH----PYLDVQQET  298 (390)
T ss_dssp             SEETTTEECCSCTTTSSSCBCSCCCBCCCCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHTTC----SSEEECCCC
T ss_pred             ccccccccccccccccccceeccccccCcCHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHhcCC----CCcccCCCC
Confidence                                  12233467788888877776553  45667777777777766543    2221111  


Q ss_pred             -EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC-------C-C---------------------CEEEEecCCCC
Q 017259          280 -RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-------H-D---------------------TIVRLTPPLSI  329 (374)
Q Consensus       280 -~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-------~-~---------------------~~lRi~~~~~~  329 (374)
                       ......+++.++.. .+.+.+++.+.|.++||.+++.       . +                     ..+|++++..+
T Consensus       299 ~~~~~~~~~i~~~~~-~~~~~~~l~~~L~~~gI~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~l~~~~~~  377 (390)
T 3b8x_A          299 GESSWFGFSFIIKKD-SGVIRKQLVENLNSAGIECRPIVTGNFLKNTDVLKYFDYTVHNNVDNAEYLDKNGLFVGNHQIE  377 (390)
T ss_dssp             SBCCCCEEEEEECTT-SCCCHHHHHHHHHHTTBCCBCSTTSSGGGCHHHHTTCEEEESSCCHHHHHHHHHEEEEECCSSC
T ss_pred             CCcccEEEEEEecCc-CcccHHHHHHHHHHCCCCeeeecCCchhhcchhhhcCCCCCcCCChHHHHHhcCEEEeeCCCCC
Confidence             11122344455521 0115788999999999988752       1 0                     25999999999


Q ss_pred             CHHHHHHHHHHH
Q 017259          330 SSNELQEGSKAL  341 (374)
Q Consensus       330 ~~e~i~~~~~~l  341 (374)
                      |++|++++++.|
T Consensus       378 t~~di~~i~~~l  389 (390)
T 3b8x_A          378 LFDEIDYLREVL  389 (390)
T ss_dssp             CHHHHHHHHHHT
T ss_pred             CHHHHHHHHHhh
Confidence            999999999876

>2x3l_A ORN/Lys/Arg decarboxylase family protein; lyase; HET: LLP; 2.00A {Staphylococcus aureus}

Probab=99.88  E-value=1.4e-22  Score=193.25  Aligned_cols=288  Identities=15%  Similarity=0.072  Sum_probs=187.9

Q ss_pred             CCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           19 YNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +.....++++.+++ +|.+ .+++++|+++|+..+++++     .++|     |+|++.+++|++........+..+.+.
T Consensus        55 ~~~~~~~~~~~la~-~g~~~~v~~~~G~t~a~~~~~~a~-----~~~g-----d~Vlv~~~~h~s~~~~~~~~G~~~~~v  123 (446)
T 2x3l_A           55 PEEVILKSMKQVEK-HSDYDGYFLVNGTTSGILSVIQSF-----SQKK-----GDILMARNVHKSVLHALDISQQEGHFI  123 (446)
T ss_dssp             CSSHHHHHHHHHCS-CTTEEEEEESSHHHHHHHHHHHTT-----TTSS-----SCEEECTTCCHHHHHHHHHHTCCEEEC
T ss_pred             cchHHHHHHHHHHh-cCCCceEEEeCCHHHHHHHHHHHh-----cCCC-----CEEEEecCccHHHHHHHHHcCCeEEEE
Confidence            34567889999999 9875 5788999999999999887     4567     999999999877666554443332221


Q ss_pred             ccC-CCCCCCc-eeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC-C
Q 017259           98 RGF-GPLLPGH-LKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG-L  174 (374)
Q Consensus        98 ~~~-~~~~~~~-~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~-~  174 (374)
                      ... .+. .+. ..+   |++++   +.   ++++++++++ .+++|.+.+    +++|.++|++||++||+||+|++ +
T Consensus       124 ~~~~~~~-~~~~~~~---d~~~l---~~---~~~~~v~~~~-~n~~G~~~~----l~~I~~l~~~~~~~livDea~~~~~  188 (446)
T 2x3l_A          124 ETHQSPL-TNHYNKV---NLSRL---NN---DGHKLVVLTY-PNYYGETFN----VEEVIKSLHQLNIPVLIDEAHGAHF  188 (446)
T ss_dssp             EEEECTT-TSSEEEE---EC-------------CCEEEEES-SCTTSCCCC----HHHHHHHHHHTTCCEEEECTTCTTT
T ss_pred             eCeeccc-cCcCCCC---CHHHH---cC---CCceEEEEEC-CCCCeEecC----HHHHHHHHHhcCCeEEEcchhhhhh
Confidence            100 000 000 011   34555   22   4678888888 566898888    99999999999999999999986 3


Q ss_pred             cccccCcccccCCCCCcEEEe--cccccCCccchhhheeCHHHHh--hcCCC-CCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          175 ARSGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLADKEVML--CIQPG-EHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~~~~~~--~~~~~-~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      .+.+..+.  .....+|++++  +|.++++. ++|++++++++++  .+... ....+.+.+...+++..++++.+....
T Consensus       189 ~f~~~~~~--~~~~g~Di~~~S~~K~l~~~~-g~g~l~~~~~~i~~~~~~~~~~~~~~~s~~~~~~aal~~a~~~l~~~g  265 (446)
T 2x3l_A          189 GLQGFPDS--TLNYQADYVVQSFHKTLPALT-MGSVLYIHKNAPYRENIIEYLSYFQTSSPSYLIMASLESAAQFYKTYD  265 (446)
T ss_dssp             TSTTSCCC--GGGGTCSEEEECHHHHSSSCT-TCEEEEEETTCTTHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHHHCC
T ss_pred             ccCCCCCC--hHHcCCCEEEECCcccccccc-ccEEEEEcCCcCCHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHhC
Confidence            22222112  22234677654  59888776 7899888776543  22211 112234456666666666677665432


Q ss_pred             ---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecC
Q 017259          250 ---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP  326 (374)
Q Consensus       250 ---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~  326 (374)
                         +.++.+++.+++++.      .+ .+..  ...+.++++.++..    +..++.+.|.++||.++..+.+++|++++
T Consensus       266 ~~~~~~~~~~l~~~l~~~------g~-~~~~--~~~~~~l~i~~~~~----~~~~l~~~L~~~GI~v~~~g~~~iRi~~~  332 (446)
T 2x3l_A          266 STLFFAKRAQLIECLENK------GF-EMLQ--VDDPLKLLIKYEGF----TGHDIQNWFMNAHIYLELADDYQALAILP  332 (446)
T ss_dssp             CHHHHHHHHHHHHHHHHH------TC-EEEE--CSSTTEEEEECTTS----CHHHHHHHHHHTTEEESEECSSCEEEECC
T ss_pred             HHHHHHHHHHHHHHHHHc------CC-EECc--CCCCeEEEEEeCCc----CHHHHHHHHHHCCCEEEecCCCEEEEEee
Confidence               555555555555554      21 1111  11234567766522    67889999999999998444689999999


Q ss_pred             CCCCHHHHHHHHHHHHHHHhccCC
Q 017259          327 LSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ...+++++ +++++|+++++ .+.
T Consensus       333 ~~~t~e~i-~l~~aL~~~~~-~~~  354 (446)
T 2x3l_A          333 LWHHDDTY-LFDSLLRKIED-MIL  354 (446)
T ss_dssp             CCCTTCCC-CHHHHHHHHHT-CCC
T ss_pred             cCCCHHHH-HHHHHHHHHHH-hhc
Confidence            88899999 99999999998 764

>2dgk_A GAD-beta, GADB, glutamate decarboxylase beta; gadbd1-14, autoinhibition, substituted aldamine, lyase; HET: PLP; 1.90A {Escherichia coli} PDB: 2dgm_A* 1pmo_A* 2dgl_A* 1pmm_A* 3fz6_A* 3fz7_A 3fz8_A* 1xey_A*

Probab=99.88  E-value=3.8e-21  Score=183.78  Aligned_cols=309  Identities=11%  Similarity=-0.020  Sum_probs=186.1

Q ss_pred             HHHHHHHHhcccCCC-------eEEecCChHHHHHHHHHHHHHccc---ccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           23 FPVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGY---VKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~-------~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      ..++.+++++++|.+       .+++++||++|+..++.+++....   ..+|.+..+++|++.+ + |.....+....+
T Consensus        83 ~~~~~~~la~l~g~~~~~~~~~~~~~t~ggtea~~~al~a~~~~~~~~~~~~G~~~~~~~vi~~~-~-h~~~~~~~~~~G  160 (452)
T 2dgk_A           83 DLRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAGKPTDKPNLVCGP-V-QICWHKFARYWD  160 (452)
T ss_dssp             HHHHHHHHHHHTTCCCCTTSCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEESS-C-CHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccccCCceEEeCCHHHHHHHHHHHHHHHHHHHHHhcCCCCCCcEEEECC-C-cHHHHHHHHHcC
Confidence            445667778877665       389999999999999988864210   0133111126888877 4 444333322222


Q ss_pred             CccccccCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc------CCEE
Q 017259           93 DNEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY------NILM  165 (374)
Q Consensus        93 ~~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~------~i~l  165 (374)
                      -....   .+... +..    -|+++|+++|+   +++++|+++.+.+++|.+.+    +++|.++|++|      |+++
T Consensus       161 ~~v~~---v~~~~~~~~----~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~~~l  226 (452)
T 2dgk_A          161 VELRE---IPMRPGQLF----MDPKRMIEACD---ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDM  226 (452)
T ss_dssp             CEEEE---CCCBTTBCS----CCHHHHHHHCC---TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCE
T ss_pred             ceEEE---EecCCCCCe----ECHHHHHHHHh---hCCEEEEEEcCCcCCcccCC----HHHHHHHHHHHhhccCCCCcE
Confidence            11111   11100 000    17999999987   46899999999899999988    99999999996      9999


Q ss_pred             EEeccccCCcc--cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH-HH-hhcCC--CCCC-------CCCCC
Q 017259          166 IADEIQSGLAR--SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE-VM-LCIQP--GEHG-------STFGG  230 (374)
Q Consensus       166 i~Dea~~~~~~--~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~-~~-~~~~~--~~~~-------~~~~~  230 (374)
                      ++|++|+++..  ..............|.++++  |.+.+|+ ++|+++.+++ +. +.+..  ...+       ..++.
T Consensus       227 ~vD~a~~~~~~~~~~~~~~~~~~~~~~d~~~~~~hK~~~~~~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r  305 (452)
T 2dgk_A          227 HIDAASGGFLAPFVAPDIVWDFRLPRVKSISASGHKFGLAPL-GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINFSR  305 (452)
T ss_dssp             EEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS-SCEEEEESSGGGSCGGGCEEECCTTCCEEECCSCCSC
T ss_pred             EEEcccHHHHHHhhCccchhhcCCCCCcEEEECcccccCCCC-CeEEEEEcCHHHHHHHhccCccccCCCCCCcccCCCC
Confidence            99999986532  01111111111134555554  8666788 9999888643 32 33321  1111       01122


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE----EEeeeEEEEeccCCC-chhHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR----GRGLFNAVEFDKTAL-PVSAYDI  302 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~~-~~~~~~~  302 (374)
                      +.....+..++++.+..+   ++.++..++++++.+.|++.    +++....+    +..+++.|.++.... ..+..++
T Consensus       306 ~~~~~~~~~aal~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~~~~~v~f~~~~~~~~~~~~~~l  381 (452)
T 2dgk_A          306 PAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLYDL  381 (452)
T ss_dssp             BCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SSEEEEEECCTTTBSSEEEEEECTTCCCSCCHHHH
T ss_pred             hhHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEecCCCCCCCeEEEEEEecCcccccCCHHHH
Confidence            222333344445544333   34555555666666655543    22222122    245667776654210 0135789


Q ss_pred             HHHHHHCCeEecc----C---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          303 CLKMKERGILAKP----T---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       303 ~~~l~~~Gi~v~~----~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      .+.|.++|+.++.    .   +..++|++++...|+++++++++.|+++++ .+...+
T Consensus       382 ~~~L~~~Gi~v~~~~~~~~~~~~~~lRis~~~~~t~e~id~li~~l~~~~~-~~~~~~  438 (452)
T 2dgk_A          382 SERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK-YLSDHP  438 (452)
T ss_dssp             HHHHHHTTCBCCEEECSTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHHCG
T ss_pred             HHHHHhcCCeeeeeeCCcccCCeEEEEEEecCCCCHHHHHHHHHHHHHHHH-HHHhCC
Confidence            9999999996542    2   245899999888899999999999999988 765544

>3n0l_A Serine hydroxymethyltransferase; alpha beta class, 3-layer(ABA) sandwich, CSGI transferase, structural genomics; HET: MSE; 1.80A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.88  E-value=6.5e-21  Score=180.06  Aligned_cols=287  Identities=16%  Similarity=0.148  Sum_probs=178.4

Q ss_pred             HHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc--ccCCccccccCCC
Q 017259           26 FAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS--MSCDNEAIRGFGP  102 (374)
Q Consensus        26 l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~--~~~~~~~~~~~~~  102 (374)
                      ++++++++++.+.. ++++||++|++.+++.+     .++|     |+|++..++|++.......  ..+.. +..  .+
T Consensus        76 ~~~~la~~~g~~~~~i~~~sGt~a~~~~~~~~-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~~g~~-~~~--~~  142 (417)
T 3n0l_A           76 AIERCKKLFNCKFANVQPNSGSQANQGVYAAL-----INPG-----DKILGMDLSHGGHLTHGAKVSSSGKM-YES--CF  142 (417)
T ss_dssp             HHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----SCTT-----CEEEEECC----------------CC-SEE--EE
T ss_pred             HHHHHHHHhCCCCcceEeccHHHHHHHHHHHh-----cCCC-----CEEEecccccccccchhhhhhhhcce-eee--Ee
Confidence            44477888787754 66677799999999988     5677     9999999999775432111  11100 000  00


Q ss_pred             CCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccC
Q 017259          103 LLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRM  180 (374)
Q Consensus       103 ~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~  180 (374)
                      +  ++. -.+ .|+++|++++++.  +++++++++++  +|...+    +++|.++|++||++||+||+|+ |....+..
T Consensus       143 ~--~~~-~~~~~d~~~l~~~i~~~--~~~~v~~~~~~--~G~~~~----l~~i~~l~~~~~~~li~Dea~~~g~~~~~~~  211 (417)
T 3n0l_A          143 Y--GVE-LDGRIDYEKVREIAKKE--KPKLIVCGASA--YARVID----FAKFREIADEIGAYLFADIAHIAGLVVAGEH  211 (417)
T ss_dssp             E--CCC-TTSSCCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTSS
T ss_pred             c--cCC-CCCCcCHHHHHHHHHhc--CCeEEEECCcc--cCccCC----HHHHHHHHHHcCCEEEEECccchhhhhcccC
Confidence            0  000 011 3899999999853  56777776644  377776    9999999999999999999975 33222221


Q ss_pred             cccccCCCCCcEE--EecccccCCccchhhheeC-HHHHhhcCCCC-CCCCCCCCHHHHHHHHHHHHHHhh---hcHHHH
Q 017259          181 LASDWEEVRPDMV--ILGKALGGGVIPVSAVLAD-KEVMLCIQPGE-HGSTFGGNPLASAVAIASLDVIRD---EKLAER  253 (374)
Q Consensus       181 ~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~aa~~al~~~~~---~~~~~~  253 (374)
                      .. . .. ..|++  |+||++ +|+ ++|+++++ +++.+.+.... .+.+.+++...++++.+++.....   +++.++
T Consensus       212 ~~-~-~~-~~di~~~s~sK~l-~g~-~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~a~~~~~~~~~~~~~~~  286 (417)
T 3n0l_A          212 PS-P-FP-YAHVVSSTTHKTL-RGP-RGGIIMTNDEELAKKINSAIFPGIQGGPLMHVIAAKAVGFKFNLSDEWKVYAKQ  286 (417)
T ss_dssp             CC-C-TT-TCSEEEEESSTTT-CSC-SCEEEEESCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHTSHHHHHHHHH
T ss_pred             CC-c-cc-cceEEEeeCcccc-CCC-CeeEEEECCHHHHHHHhhhhCCcccCCcHHHHHHHHHHHHHHHHhhhHHHHHHH
Confidence            11 0 11 24665  556999 566 78999888 67777765432 223334456666666666665322   245666


Q ss_pred             HHHHHHHHHHHHHHHHHhCCCcee-eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC----------CCCEEE
Q 017259          254 SAHLGEELRQHLFKIQQQFPNYVK-EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT----------HDTIVR  322 (374)
Q Consensus       254 ~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~----------~~~~lR  322 (374)
                      ++++.+++.+.|++.     ++.. .....+.++++.+...  +.+..++.+.|.++||.+++.          ..+.+|
T Consensus       287 ~~~~~~~l~~~L~~~-----g~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~gi~v~~~~~~~~~~~~~~~~~~r  359 (417)
T 3n0l_A          287 VRTNAQVLANVLMDR-----KFKLVSDGTDNHLVLMSFLDR--EFSGKDADLALGNAGITANKNTVPGEIRSPFITSGLR  359 (417)
T ss_dssp             HHHHHHHHHHHHHHT-----TCEEGGGSCSSSEEEEECTTS--SSCHHHHHHHHHHTTEECEECCCTTCCSCTTTCSEEE
T ss_pred             HHHHHHHHHHHHHhC-----CceeccCCCCceEEEEEcccC--CCCHHHHHHHHHHcCeEEeccccCCCCcccCCCCeeE
Confidence            666777777777663     2211 1112355677766432  125778888899999998743          236799


Q ss_pred             EecCC----CCCHHHHHHHHHHHHHHHhccC
Q 017259          323 LTPPL----SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       323 i~~~~----~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++++.    ..+++++++++++|+++++ ..
T Consensus       360 i~~~~~~~~~~~~~~i~~~~~~l~~~l~-~~  389 (417)
T 3n0l_A          360 LGTPALTARGFKEKEMEIVSNYIADILD-DV  389 (417)
T ss_dssp             EECHHHHHTTCCHHHHHHHHHHHHHHHH-TT
T ss_pred             ecCHHHhhCCCCHHHHHHHHHHHHHHHh-cc
Confidence            98653    3578999999999999997 54

>3ju7_A Putative PLP-dependent aminotransferase; NP_978343.1, struct genomics, joint center for structural genomics, JCSG; HET: LLP PGE; 2.19A {Bacillus cereus atcc 10987}

Probab=99.88  E-value=1.2e-21  Score=182.75  Aligned_cols=305  Identities=16%  Similarity=0.124  Sum_probs=197.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHH-hcccC-CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERL-TSMFG-YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l-~~~~~-~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.+.++.+.++.   ..+...++++.+ ++++| .+++++++||++|+..++..+.    .++|     |+|++..++
T Consensus        20 ~a~~~~~~~~~~~~---~~~~~~~l~~~~~a~~~g~~~~~v~~~sgt~al~~al~~l~----~~~G-----d~Vi~~~~~   87 (377)
T 3ju7_A           20 DELKEIDASHIYTN---YGPINQRFEQTIMSGFFQNRGAVTTVANATLGLMAAIQLKK----RKKG-----KYALMPSFT   87 (377)
T ss_dssp             HHHHHHHHHTCCSS---SCHHHHHHHHHHHHHTSTTCSEEEEESCHHHHHHHHHHHHS----CTTC-----CEEEEESSS
T ss_pred             HHHHHHHHcCCccc---CCHHHHHHHHHHHHHHhCCCCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEECCCC
Confidence            45666666554321   256788999999 99999 8899999999999999998773    5677     999999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      |.+........+..+.+.    +    +..-.+ -|++++++++....+++++++.+   +++|...+    +++|.++|
T Consensus        88 ~~~~~~~~~~~G~~~~~v----~----~~~~~~~~d~~~l~~~i~~~~~~tk~v~~~---~~~G~~~~----~~~i~~la  152 (377)
T 3ju7_A           88 FPATPLAAIWCGLEPYFI----D----ISIDDWYMDKTVLWDKIEELKEEVAIVVPY---ATFGSWMN----LEEYEELE  152 (377)
T ss_dssp             CTHHHHHHHHTTCEEEEE----C----BCTTTCSBCHHHHHHHHHHHGGGEEEECCB---CGGGBCCC----CHHHHHHH
T ss_pred             cHHHHHHHHHcCCEEEEE----e----cCCccCCcCHHHHHHHHhcCCCCceEEEEE---CCCCCccC----HHHHHHHH
Confidence            877554443333222211    1    110011 18999999884321238888743   44677777    99999999


Q ss_pred             HhcCCEEEEeccccCCc-ccccCcccccC-CCCCcEE--Eec--ccccCCccchhhhee-CHHHHhhcCCC---------
Q 017259          159 SKYNILMIADEIQSGLA-RSGRMLASDWE-EVRPDMV--ILG--KALGGGVIPVSAVLA-DKEVMLCIQPG---------  222 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~-~~g~~~~~~~~-~~~~d~~--s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~---------  222 (374)
                      + ||++||+|++|+... ..+.     .. +...|+.  ||+  |.+++|  .+|+++. ++++.+.++..         
T Consensus       153 ~-~~~~vi~D~a~a~g~~~~~~-----~~g~~~~d~~~~S~~~~K~l~~g--~gG~~~~~~~~l~~~~~~~~~~g~~~~~  224 (377)
T 3ju7_A          153 K-KGVPVVVDAAPGFGLMNGGM-----HYGQDFSGMIIYSFHATKPFGIG--EGGLIYSKNEEDIQRIKRMGNFGFDTNR  224 (377)
T ss_dssp             H-TTCCBEEECTTCTTCEETTE-----ETTTTCSSEEEEECBTTSSSCCB--SCEEEEESCHHHHHHHHHHTBTTBCTTS
T ss_pred             h-cCCEEEEECCCccCCeECCE-----eccCCCCcEEEEECCCCCcCCCC--CcEEEEECCHHHHHHHHHHHhcCCCCCC
Confidence            9 999999999997211 1111     11 1123444  543  888864  4566665 45655544321         


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceee-E-EEEeeeEEEEeccCCCch
Q 017259          223 ---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKE-V-RGRGLFNAVEFDKTALPV  297 (374)
Q Consensus       223 ---~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~-~~~g~~~~~~~~~~~~~~  297 (374)
                         ..+..+..+.+.++.+++.++.+  +.+.++.+++.+++.+.|+++...-...... . .....++.+.+++..   
T Consensus       225 ~~~~~g~~~~~~~~~aa~~~~~l~~l--~~~~~~~~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---  299 (377)
T 3ju7_A          225 ECTMMGFNCKMSEYAAAIGIATMKKW--DDKLKERTRISEWYKQLLQSNGLMKKGWQLQKTEAVIQQFMPILCPEEV---  299 (377)
T ss_dssp             CBCSSCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHHTTTTTTTCBCCCCSCBCCSSEEEECCTTS---
T ss_pred             ceeeccccCCCCHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHhcCCCCccccccCCCCCcceEEEEEEEeCChh---
Confidence               12345667888877777777654  3457777888888888887653110011111 1 111223344444332   


Q ss_pred             hHHHHHHHHHHCCeEeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          298 SAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       298 ~~~~~~~~l~~~Gi~v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.+++.++|.++||.++...                         ...+|+.++...|++|++++++.|++++.
T Consensus       300 ~~~~l~~~L~~~gI~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~l~lp~~~~~t~~di~~v~~~l~~~~~  373 (377)
T 3ju7_A          300 RNKQVIEDLKKQKIEARLYFSPSCHQQVLFRNYKSTDLTRTNKIAKRIVSLPLWEGMTKEIVEQIVICLGQKVV  373 (377)
T ss_dssp             CHHHHHHHHHTTTBCCBCTTSSCGGGSGGGTTSCBSCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHTC---
T ss_pred             hHHHHHHHHHHCCCceecccCCccccchhhhcCCCCCCHHHHHHHhCEEECCCCCCCCHHHHHHHHHHHHHHHh
Confidence            48899999999999885421                         35789998889999999999999988776

>3bwn_A AT1G70560, L-tryptophan aminotransferase; auxin synthesis, pyridoxal-5'- phosphate, indole-3-pyruvate; HET: LLP PMP PHE; 2.25A {Arabidopsis thaliana} PDB: 3bwo_A*

Probab=99.88  E-value=7.7e-23  Score=191.86  Aligned_cols=271  Identities=13%  Similarity=0.096  Sum_probs=175.0

Q ss_pred             HHHHHHHhcccC-------C-CeEEecCChHHHHHHHHHHHHHcccccccCCCCcc----EEEEeccCCCCccccccccc
Q 017259           24 PVFAERLTSMFG-------Y-DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA----IIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        24 ~~l~~~l~~~~~-------~-~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~----~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .++++.++++++       . +++++|+|+++++..+++++.     .+|     |    +|++.+|+|.++...+...+
T Consensus        71 ~~lr~aia~~~~~~g~~~~~~~~i~~t~G~~~al~~~~~~l~-----~~G-----d~~~~~Vlv~~P~y~~~~~~~~~~g  140 (391)
T 3bwn_A           71 PELEDAIKDLHGVVGNAATEDRYIVVGTGSTQLCQAAVHALS-----SLA-----RSQPVSVVAAAPFYSTYVEETTYVR  140 (391)
T ss_dssp             HHHHHHHHHHHHHHCSBCCSSSEEEEEEHHHHHHHHHHHHHH-----HTS-----SSSSEEEEECSSCCTHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHhcCCCCCCCCeEEEeCChHHHHHHHHHHhc-----CCC-----CCCcceEEEcCCCchhHHHHHHHcC
Confidence            677777777664       4 589999999999999999884     456     7    99999999977655444332


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..             +..++. |.+.++      .++++++++++++||+|.+..      +|++.++.++++||+||+|
T Consensus       141 ~~-------------~~~~~~-d~~~l~------~~~~k~v~l~~p~NPtG~~~~------~l~~~~~~~~~~ii~De~y  194 (391)
T 3bwn_A          141 SG-------------MYKWEG-DAWGFD------KKGPYIELVTSPNNPDGTIRE------TVVNRPDDDEAKVIHDFAY  194 (391)
T ss_dssp             BT-------------TEEEEE-ESTTCC------CCSCEEEEEESSCTTTCCCCC------CCC-----CCCEEEEECTT
T ss_pred             Ce-------------EEEecC-CHHHcC------CCCCEEEEECCCCCCCchhHH------HHHHHhhcCCCEEEEeCCC
Confidence            21             112222 222222      146888888889999998873      3433222233999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--  247 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--  247 (374)
                      .+ . ....+. ...+....+.||||.++ .|+ |+||+++ ++++.+.+.......+++.+.+++.++.++++...+  
T Consensus       195 ~~-~-~~~~l~-~~~~~~i~~~S~SK~~g~~Gl-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~l~~~~~~~  270 (391)
T 3bwn_A          195 YW-P-HYTPIT-RRQDHDIMLFTFSKITGHAGS-RIGWALVKDKEVAKKMVEYIIVNSIGVSKESQVRTAKILNVLKETC  270 (391)
T ss_dssp             CS-T-TTSCCC-CCBCCSEEEEEHHHHHSCGGG-CEEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHT
T ss_pred             CC-C-CCCccc-cCCCCeEEEEechhhcCCCcc-ceEEEEecCHHHHHHHHHHhcccccCCCHHHHHHHHHHHhCcchhc
Confidence            73 1 111111 11122222449999998 799 9999987 888888776543333567799999999888876421  


Q ss_pred             ------hcH----HHHHHHHHHHHHHHHHHHHHhCCCcee----eE---------EEEeeeEEEEeccCCCchhHHHHHH
Q 017259          248 ------EKL----AERSAHLGEELRQHLFKIQQQFPNYVK----EV---------RGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       248 ------~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~---------~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                            +++    .++++++++.+.+.|++    +|++..    ..         +..|.++|+.+++.      ..+.+
T Consensus       271 ~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~----~~~~~~~~p~~~~~~f~~~~~~~~g~~~~~~~~~~------~~~~~  340 (391)
T 3bwn_A          271 KSESESENFFKYGREMMKNRWEKLREVVKE----SDAFTLPKYPEAFCNYFGKSLESYPAFAWLGTKEE------TDLVS  340 (391)
T ss_dssp             TCCCTTTSHHHHHHHHHHHHHHHHHHHHHT----CSSEECCCCCCEEETTTTEEECCCCSEEEEEESSS------CCHHH
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHh----CCCcccccCCccccccccccCCCcceEEEecCCcH------HHHHH
Confidence                  233    44444445555554443    221111    01         12345778877632      35666


Q ss_pred             HHHHCCeEeccCC-----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILAKPTH-----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v~~~~-----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|.++||.++++.     .+++||++.  .+++++++++++|+++++
T Consensus       341 ~l~~~gV~v~pg~~fg~~~~~iRis~~--~~~e~i~~~~~~L~~~~~  385 (391)
T 3bwn_A          341 ELRRHKVMSRAGERCGSDKKHVRVSML--SREDVFNVFLERLANMKL  385 (391)
T ss_dssp             HHHHTTEECEEGGGGTCCTTEEEEESC--SCHHHHHHHHHHHHSCC-
T ss_pred             HHHHCCEEEccCCCCCCCCCEEEEEec--CCHHHHHHHHHHHHHHHH
Confidence            7778999998852     679999955  588999999999987776

>2z67_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine biosynthesis, seven-stranded BETE-strand, PYR 5'-phosphate; HET: PLP; 2.50A {Methanococcus maripaludis} SCOP: c.67.1.9

Probab=99.87  E-value=6.7e-21  Score=182.18  Aligned_cols=296  Identities=13%  Similarity=0.070  Sum_probs=183.4

Q ss_pred             cHHHHHHHHhcccCCCe-EEecCChH-HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           22 KFPVFAERLTSMFGYDM-VLPMNTGA-EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~~-~~~~~~gs-~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      ..+++++++++++|.+. +++|+||+ +++..++..++..   .+|     +.|++.++.|+.... .....+-......
T Consensus       134 ~~~~~~~~la~~~g~~~~~~~t~g~te~a~~~al~~~~~~---~~~-----~~vi~~~~~h~s~~~-~~~~~G~~~~~v~  204 (456)
T 2z67_A          134 LTNKILESFFKQLGLNVHAIATPISTGMSISLCLSAARKK---YGS-----NVVIYPYASHKSPIK-AVSFVGMNMRLVE  204 (456)
T ss_dssp             HHHHHHHHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH---HCC-----CEEEEECCCCHHHHH-HHHHTTCEEEEEC
T ss_pred             HHHHHHHHHHHHcCCCCCEEEeCcHHHHHHHHHHHHHHHh---cCC-----CEEEEECCCcHHHHH-HHHHcCCCceEEE
Confidence            34558888888887764 89999999 5666677766431   134     778888887654332 2222221110000


Q ss_pred             CCCCCCCceeccCCCHHHHHHHH-Hhc-CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIF-KES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l-~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ..+...+.    ..|+++|+++| +.. .+++.++++..+++++|.+.+    +++|.++|++||+++++|++|+++.. 
T Consensus       205 ~~~~~~~~----~~d~~~l~~~i~~~~~~~~~~~vv~~~~nn~tG~i~~----l~~I~~la~~~g~~v~vD~A~~~~~~-  275 (456)
T 2z67_A          205 TVLDGDRV----YVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNN-  275 (456)
T ss_dssp             CEEETTEE----ECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCH-
T ss_pred             EeccCCCC----CcCHHHHHHHHHHHhhCCCeEEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCcEEEECcchHHHH-
Confidence            00000000    12799999999 431 236777777777788999988    99999999999999999999986532 


Q ss_pred             cc-CcccccCCCCCcEEEe--cccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcH
Q 017259          178 GR-MLASDWEEVRPDMVIL--GKALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKL  250 (374)
Q Consensus       178 g~-~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~  250 (374)
                      |. ..........+|++++  +|.+.+++ ++|+++. ++++.+.+.+...+.....+   ..++.+++..+..   +++
T Consensus       276 g~~~~~~~~~~~~~D~~~~s~hK~~~~p~-g~G~l~~~~~~~~~~l~~~~~g~~~~~~---~~~~~aal~~l~~~~~~~~  351 (456)
T 2z67_A          276 YYLEKLKKAFKYRVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRASATP---VVNTLVSLLSMGSKNYLEL  351 (456)
T ss_dssp             HHHHHHHHHHTSCCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBCSHH---HHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHhhCCCCCEEEEcCCCCcCCCC-CeEEEEEcCHHHHhhcCcCCCCCCCCCH---HHHHHHHHHHHHHHHHHHH
Confidence            11 1111111115676644  59877788 8999998 56777776543332221111   2333444444333   356


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe---Eec------------c
Q 017259          251 AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI---LAK------------P  315 (374)
Q Consensus       251 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi---~v~------------~  315 (374)
                      .++.+++.+++.+.|+++.......+...  . .+++|.+....   ...++.+.|.++|+   -+.            .
T Consensus       352 ~~~~~~~~~~l~~~L~~~~~~~g~~v~~~--~-~~v~~~~~~~~---~~~~l~~~L~~~gi~~~rv~~~~g~f~G~~~~~  425 (456)
T 2z67_A          352 VKNQKNSKKLLDELLNDLSKKTGGKFLDV--E-SPIASCISVNS---DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGT  425 (456)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSSCCBCCC--C-CSSEEEEECSS---CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSC
T ss_pred             HHHHHHHHHHHHHHHHhcccccCCEecCC--C-CeEEEEEeccc---HHHHHHHHHHHcCCCcceEEeecCccccccccc
Confidence            77888888888888887641110011111  2 56666662111   24689999999985   333            2


Q ss_pred             CCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          316 THDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       316 ~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ...+++|++++..++++|+++++++|++++
T Consensus       426 ~~~~~vr~s~~~~~t~eeid~~l~~L~~~~  455 (456)
T 2z67_A          426 YTHDYIVMNAAIGVRTEDIVNSVSKLEKIL  455 (456)
T ss_dssp             CSCCEEEEECCTTCCHHHHHHHHHHHHTC-
T ss_pred             cCcchhhhhhhcCCCHHHHHHHHHHHHHHh
Confidence            224799999998899999999999998654

>2jis_A Cysteine sulfinic acid decarboxylase; pyridoxal phosphate, alternative splicing, pyridoxal phosphate (PLP), structural genomics consortium (SGC); HET: PLP; 1.6A {Homo sapiens}

Probab=99.87  E-value=1.3e-20  Score=182.95  Aligned_cols=305  Identities=14%  Similarity=0.084  Sum_probs=184.9

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHccc---ccccCC-CCccEEEEeccCCCCcccccccccCCccc
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGY---VKKKFS-IDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~-~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ..++.+++++++|.+  .+++++|||+|+..++++++.+..   ..+|.. .++.+|++..++| .....+....+.+. 
T Consensus       150 e~~~~~~la~l~g~~~~~~~~t~ggtea~~~al~~ar~~~~~~~~~~G~~~~~~~~vl~s~~~h-~s~~~~~~~~g~g~-  227 (515)
T 2jis_A          150 EEEVLRKLRALVGWSSGDGIFCPGGSISNMYAVNLARYQRYPDCKQRGLRTLPPLALFTSKECH-YSIQKGAAFLGLGT-  227 (515)
T ss_dssp             HHHHHHHHHHHHTCSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSC-THHHHHHHHTTSCG-
T ss_pred             HHHHHHHHHHHhCCCCCCeEEcCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCCcc-HHHHHHHHHcCCCC-
Confidence            345667788888764  899999999999999999864310   113400 0012777777764 43333332222210 


Q ss_pred             cccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           97 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                              ..+..++.+     |+++|+++|++.   +.++++|+++.+.+++|.+.+    +++|.++|++||+++++|
T Consensus       228 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~Vv~~~~~n~tG~i~~----l~~I~~la~~~g~~l~vD  295 (515)
T 2jis_A          228 --------DSVRVVKADERGKMVPEDLERQIGMAEAEGAVPFLVSATSGTTVLGAFDP----LEAIADVCQRHGLWLHVD  295 (515)
T ss_dssp             --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred             --------CcEEEEecCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEeCCCCCCCCccC----HHHHHHHHHHcCCeEEEe
Confidence                    012223322     799999999752   336899999999999999988    999999999999999999


Q ss_pred             ccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCHH--HHhhc----CCCCCC--C---------CC
Q 017259          169 EIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCI----QPGEHG--S---------TF  228 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~~--~~~~~----~~~~~~--~---------~~  228 (374)
                      ++|+++......+.....++ .+|++++  +|.++++. ++|+++.+++  +.+..    .+...+  .         ++
T Consensus       296 ~a~~~~~~~~~~~~~~~~g~~~aD~v~~s~hK~l~~p~-g~G~l~~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  374 (515)
T 2jis_A          296 AAWGGSVLLSQTHRHLLDGIQRADSVAWNPHKLLAAGL-QCSALLLQDTSNLLKRCHGSQASYLFQQDKFYDVALDTGDK  374 (515)
T ss_dssp             ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESCCSCHHHHHHCC---------CCSCGGGCCGGG
T ss_pred             hhhhhHHHhChhhHhhcCCCccCCEEEECcccccCCCC-CeeEEEEeChHHHHHHHhcCCchhccCCcccccccCCCCCC
Confidence            99996544333222223344 6788766  69998777 8899888765  54431    111000  0         00


Q ss_pred             ------CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe-ccC-----CCc
Q 017259          229 ------GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF-DKT-----ALP  296 (374)
Q Consensus       229 ------~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~-~~~-----~~~  296 (374)
                            ....+.+.+++.++....-+++.++..++.+++.+.|++.    |++....++....+.|.. +..     ...
T Consensus       375 ~~~~~rr~~al~~~~~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~p~~~~~~~~~~  450 (515)
T 2jis_A          375 VVQCGRRVDCLKLWLMWKAQGDQGLERRIDQAFVLARYLVEEMKKR----EGFELVMEPEFVNVCFWFVPPSLRGKQESP  450 (515)
T ss_dssp             CSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTS----TTEEESSCCSSSEEEEEECCGGGTTCTTST
T ss_pred             CCCCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEeCCCCeeEEEEEEeCccccccccch
Confidence                  1123444444444432222345566666777777766553    222111112223344433 220     000


Q ss_pred             hh-------HHHHHHHHHHCCeEecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHh
Q 017259          297 VS-------AYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       297 ~~-------~~~~~~~l~~~Gi~v~~-----~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ..       ...+.+.|.+.|+.+..     ...+++|+++ +..+|++|+++++++|+++++
T Consensus       451 ~~~~~l~~~~~~l~~~l~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edid~~~~~l~~~~~  513 (515)
T 2jis_A          451 DYHERLSKVAPVLKERMVKEGSMMIGYQPHGTRGNFFRVVVANSALTCADMDFLLNELERLGQ  513 (515)
T ss_dssp             THHHHHHTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEEECCCTTCCHHHHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHHHHHHHHhcCCEEEEEEEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHh
Confidence            00       12367788888965522     2246899998 788999999999999998886

>2okj_A Glutamate decarboxylase 1; PLP-dependent decarboxylase, lyase; HET: LLP PLZ; 2.30A {Homo sapiens} PDB: 2okk_A*

Probab=99.87  E-value=2.5e-20  Score=180.59  Aligned_cols=305  Identities=13%  Similarity=0.078  Sum_probs=184.2

Q ss_pred             HHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHccc---ccccCCCCcc-EEEEeccCCCCcccccccccCCccc
Q 017259           25 VFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        25 ~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~~~~-~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ++.+++++++|.+    .+++++|||+|+..++.+++.+.+   .++|....++ +|++..++|+.....+..+ +.+. 
T Consensus       136 ~~~~~la~~~g~~~~~~~~~~t~ggtea~~~al~~~~~~~~~~~~~~G~~~~~~~~v~~s~~~h~s~~~~~~~~-g~g~-  213 (504)
T 2okj_A          136 ITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGAAL-GFGT-  213 (504)
T ss_dssp             HHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTTHHHHCGGGSCCEEEEEETTSCTHHHHHHHHT-TSCG-
T ss_pred             HHHHHHHHHhCCCCCCCCEEEeCCcHHHHHHHHHHHHHHHhhHHhhcCccccCCeEEEECCcchHHHHHHHHHc-CCCc-
Confidence            3556667777654    799999999999999999864210   0123110114 6777777754433332222 2110 


Q ss_pred             cccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           97 IRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                              ..+..++.+     |+++|+++|++.   +.++++|+++.+.+++|.+.+    +++|.++|++||+++++|
T Consensus       214 --------~~v~~v~~~~~~~~d~~~L~~~i~~~~~~g~~~~~V~~~~~~~~tG~i~~----l~~I~~la~~~g~~lhvD  281 (504)
T 2okj_A          214 --------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHVD  281 (504)
T ss_dssp             --------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEECBSCSSSCCBCC----HHHHHHHHHHHTCEEEEE
T ss_pred             --------ccEEEEecCCCCCCCHHHHHHHHHHHHHCCCCceEEEEeCCCCCCCCcCC----HHHHHHHHHHcCCEEEEe
Confidence                    012223322     899999999742   236899999989899999988    999999999999999999


Q ss_pred             ccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCH-HHHhh-c---CCCCC-CCC------------
Q 017259          169 EIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVMLC-I---QPGEH-GST------------  227 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~~~-~---~~~~~-~~~------------  227 (374)
                      ++|+++......+.....++ .+|+++++  |.+++++ ++|+++.++ ++... +   .+... ...            
T Consensus       282 ~a~~~~~~~~~~~~~~~~g~~~~D~i~~~~hK~~~~p~-~~g~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~  360 (504)
T 2okj_A          282 AAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMCAGYLFQPDKQYDVSYDTGDKA  360 (504)
T ss_dssp             ETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCSSSCCSCCSSCGGGCCGGGS
T ss_pred             hhhhhHHHhCHhhHhhcCCcccCCEEEECchhhcCCCc-ceEEEEEECHHHHHHHhcCCCccccCCcccccCcCCcccCC
Confidence            99986533222221222233 56877765  9988777 899988875 45443 1   11110 000            


Q ss_pred             ----CCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEe-ccCC----C-
Q 017259          228 ----FGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEF-DKTA----L-  295 (374)
Q Consensus       228 ----~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~-~~~~----~-  295 (374)
                          .....+.+.+++.++....-+++.++..++.+++.+.|++.    |++....  .+...++.|.. +...    . 
T Consensus       361 ~~~~rr~~~l~~~a~l~~lg~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~p~~~~v~f~~~~~~~~~~~~~  436 (504)
T 2okj_A          361 IQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPDS  436 (504)
T ss_dssp             SCSSCBCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----TTEEESSSSCCSSSCEEEEECCGGGSSCCCC
T ss_pred             CCCCCCccHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCccccccccc
Confidence                01135555555555432111234555666666666666543    2221111  13344455543 3210    0 


Q ss_pred             -------chhHHHHHHHHHHCCe-Eecc--C-C-CCEEEEecC-CCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 -------PVSAYDICLKMKERGI-LAKP--T-H-DTIVRLTPP-LSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 -------~~~~~~~~~~l~~~Gi-~v~~--~-~-~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                             .....++.+.|.++|+ ++.+  . + .+++|+++. ..++++|+++++++|+++++ ++
T Consensus       437 ~~~~~~~~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRis~~~~~~t~edi~~~~~~l~~~~~-~~  502 (504)
T 2okj_A          437 PQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL  502 (504)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHT-C-
T ss_pred             hhhHHHHHHHHHHHHHHHHhCCcEEEEeeEECCceEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence                   0014578899999995 4432  1 2 268999985 77899999999999999887 54

>1w23_A Phosphoserine aminotransferase; pyridoxal-5'-phosphate; HET: PGE PLP EPE; 1.08A {Bacillus alcalophilus} SCOP: c.67.1.4 PDB: 2bhx_A* 2bi1_A* 2bi2_A* 2bi3_A* 2bi5_A* 2bi9_A* 2bia_A* 2bie_A* 2big_A*

Probab=99.86  E-value=2.2e-21  Score=179.72  Aligned_cols=281  Identities=12%  Similarity=0.055  Sum_probs=181.6

Q ss_pred             cHHHHHHHHhcccCCC---eEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           22 KFPVFAERLTSMFGYD---MVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~---~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .++++++++++++|.+   ++++++|+ ++|+..++..+...+  .+|     +.|++..++|+.. ..+... +.... 
T Consensus        49 ~~~~l~~~la~~~g~~~~~~v~~~~g~gt~al~~~~~~l~~~~--~~g-----~~vi~~~~~~~~~-~~~~~~-g~~~~-  118 (360)
T 1w23_A           49 VHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNLLTKG--TIG-----NYVLTGSWSEKAL-KEAKLL-GETHI-  118 (360)
T ss_dssp             HHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHCCTT--CEE-----EEEECSHHHHHHH-HHHHTT-SEEEE-
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEECCcchHHHHHHHHHhcCCC--Ccc-----cEEEecchhHHHH-HHHHHh-CCeEE-
Confidence            4678999999988764   79999998 999999998884211  234     6777666654321 111111 11111 


Q ss_pred             ccCCCCCCCceeccCCCHHHHHH-HHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEK-IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~-~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                         .+...+.   -+.|++++++ +++   ++++++++++++|++|.+.+         +++++||++||+||+|+.+..
T Consensus       119 ---v~~~~~~---~~~d~~~l~~~~i~---~~~k~v~~~~~~nptG~~~~---------~i~~~~~~~li~D~a~~~~~~  180 (360)
T 1w23_A          119 ---AASTKAN---SYQSIPDFSEFQLN---ENDAYLHITSNNTIYGTQYQ---------NFPEINHAPLIADMSSDILSR  180 (360)
T ss_dssp             ---EEECGGG---TSCSCCCGGGCCCC---TTEEEEEEESEETTTTEECS---------SCCCCCSSCEEEECTTTTTSS
T ss_pred             ---eeccccc---CcCCccchHhhccC---CCCCEEEEeCCCCCcceecc---------cccccCCceEEEechhhcCCC
Confidence               0100000   0125666666 564   57999999999999998764         223389999999999985422


Q ss_pred             cccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC-----------CCCC-CCCCHHHHHHHHHHH
Q 017259          177 SGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE-----------HGST-FGGNPLASAVAIASL  242 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~~-~~~~~~~~~aa~~al  242 (374)
                         .....  .+  |++  |+||.++ +. ++||+++++++.+.+....           .... .+.+..++.++.+++
T Consensus       181 ---~~~~~--~~--di~~~s~sK~~~-~~-G~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~al  251 (360)
T 1w23_A          181 ---PLKVN--QF--GMIYAGAQKNLG-PS-GVTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVL  251 (360)
T ss_dssp             ---CCCGG--GC--SEEEEETTTTTS-CT-TCEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHH
T ss_pred             ---CcCcc--cC--CEEEEEcccccC-CC-CcEEEEEcHHHHhhcccCCcchhhhhhhhhccCCCCCCCHHHHHHHHHHH
Confidence               11111  12  454  6679887 33 5789999988887776532           1122 244667777777788


Q ss_pred             HHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceee---EE-EEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          243 DVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKE---VR-GRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       243 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~---~~-~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      +.+.+.    ++.++++++.+++.+.|+++    +++...   .. ..+.++++.+++..   +..++.+.|.++||.+.
T Consensus       252 ~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~l~~~gi~~~  324 (360)
T 1w23_A          252 DWIKDLGGAEAIAKQNEEKAKIIYDTIDES----NGFYVGHAEKGSRSLMNVTFNLRNEE---LNQQFLAKAKEQGFVGL  324 (360)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHTT----TTSSEESSCGGGBCSSEEEEECSSHH---HHHHHHHHHHHTTEESC
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHHHHHHHc----cCcccccCCchhccCcEEEEEcCCCc---cHHHHHHHHHHCCeeee
Confidence            766442    34556666666666666543    222111   11 12447888775421   46789999999999998


Q ss_pred             cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++.  .+++|++++...+++++++++++|+++++
T Consensus       325 ~~~~~~~~iRis~~~~~~~~~i~~~~~~l~~~~~  358 (360)
T 1w23_A          325 NGHRSVGGCRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             BCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             cCCCCCCeEEEEecCCCCHHHHHHHHHHHHHHHh
Confidence            864  57899999888899999999999999876

>3hbx_A GAD 1, glutamate decarboxylase 1; calmodulin-binding, lyase, pyridoxal phosphate; HET: LLP; 2.67A {Arabidopsis thaliana}

Probab=99.85  E-value=1.5e-19  Score=174.65  Aligned_cols=303  Identities=13%  Similarity=0.037  Sum_probs=189.3

Q ss_pred             HHHHHHhcccCCC-------eEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           25 VFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        25 ~l~~~l~~~~~~~-------~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ++.+++++++|.+       ..++++||++|+..++.+++.....   .+|.+.++++|++..++|......+...+.. 
T Consensus        99 ~~~~~la~l~g~~~~~~~~~~g~~t~ggtea~~~a~~a~~~~~~~~~~~~G~~~~~~~vi~~~~~h~s~~~~~~~~G~~-  177 (502)
T 3hbx_A           99 RCVNMIAHLFNAPLEEAETAVGVGTVGSSEAIMLAGLAFKRKWQNKRKAEGKPVDKPNIVTGANVQVCWEKFARYFEVE-  177 (502)
T ss_dssp             HHHHHHHHHTTCCCCSSCCCEEEEESSHHHHHHHHHHHHHHHHHHHHHHTTCCCSCCEEEEETTCCHHHHHHHHHTTCE-
T ss_pred             HHHHHHHHHhCCCcccccCCcceecCcHHHHHHHHHHHHHHHHhHHHHhcCCCCCCcEEEEcCCchHHHHHHHHHcCce-
Confidence            4666777777766       3457999999999999888643100   1252233348999888865443333322211 


Q ss_pred             cccccCCCCCCCceeccC------CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc------C
Q 017259           95 EAIRGFGPLLPGHLKVDF------GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY------N  162 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~------~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~------~  162 (374)
                                  +..++.      -|+++++++++   +++++++++.+.+++|.+.+    +++|.++|+++      |
T Consensus       178 ------------~~~v~~~~~~~~~d~~~l~~~i~---~~t~~v~~~~~~n~tG~~~~----l~~I~~ia~~~~~~~~~~  238 (502)
T 3hbx_A          178 ------------LKEVKLSEGYYVMDPQQAVDMVD---ENTICVAAILGSTLNGEFED----VKLLNDLLVEKNKETGWD  238 (502)
T ss_dssp             ------------EEEECCBTTBCSCCHHHHHHHCC---TTEEEEEEEBSCTTTCCBCC----HHHHHHHHHHHHHHHCCC
T ss_pred             ------------eEEEecCCCcCcCCHHHHHHHHh---hCCEEEEEecCCCCCCcccC----HHHHHHHHHHhhhccCCC
Confidence                        111221      17899999887   57889999999999999998    99999999999      9


Q ss_pred             CEEEEeccccCCcc--cccCcccccCCCCCcEEEe--cccccCCccchhhheeC-HHHH-hhcC--CCCCC-------CC
Q 017259          163 ILMIADEIQSGLAR--SGRMLASDWEEVRPDMVIL--GKALGGGVIPVSAVLAD-KEVM-LCIQ--PGEHG-------ST  227 (374)
Q Consensus       163 i~li~Dea~~~~~~--~g~~~~~~~~~~~~d~~s~--sK~~~~G~~~~G~~~~~-~~~~-~~~~--~~~~~-------~~  227 (374)
                      +++++|++|+++..  ..............|.+++  .|.+.++. ++|+++.+ ++.. +.+.  ....+       ..
T Consensus       239 ~~l~VD~A~~~~~~p~~~~~~~~~~~~~~~D~v~~s~hK~l~~p~-g~G~~~~~~~~~l~~~~~~~~~yl~~~~~~~~~~  317 (502)
T 3hbx_A          239 TPIHVDAASGGFIAPFLYPELEWDFRLPLVKSINVSGHKYGLVYA-GIGWVIWRNKEDLPEELIFHINYLGADQPTFTLN  317 (502)
T ss_dssp             CCEEEECTTGGGTHHHHCTTCCCSTTSTTEEEEEEETTTTTCCCS-SCEEEEESSGGGSCGGGCEEECSSSSCEEECCSC
T ss_pred             CeEEEECCccchhhhhhCcccccccCCCCceEEEECcccccCCCC-CeEEEEEeCHHHhhHHhccCcccccCCCCCcccc
Confidence            99999999986521  0111111111123455544  38776777 88887765 3333 2221  11111       11


Q ss_pred             CCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDIC  303 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~  303 (374)
                      ++.+.....+..++++.+..+   +..++..++.+++.+.|++..    ++..... +..+++.|.++... ..+..++.
T Consensus       318 ~sr~~~~~~a~~~al~~lg~~g~~~~~~~~~~~a~~l~~~L~~~~----~~~~~~~~~~~~~v~f~~~~~~-~~~~~~l~  392 (502)
T 3hbx_A          318 FSKGSSQVIAQYYQLIRLGHEGYRNVMENCRENMIVLREGLEKTE----RFNIVSKDEGVPLVAFSLKDSS-CHTEFEIS  392 (502)
T ss_dssp             CSCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTT----CEEECSCSSSSSEEEEEESSCS-SCCHHHHH
T ss_pred             CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC----CEEEEeCCCCceEEEEEecCCC-cCCHHHHH
Confidence            222233444455555555443   345555666666666665542    1221112 34567777775421 11466899


Q ss_pred             HHHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcCCC
Q 017259          304 LKMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKMRK  354 (374)
Q Consensus       304 ~~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~~  354 (374)
                      +.|.++|+++...       +...+||+++...+.++++.+++.|+++++ .+.....
T Consensus       393 ~~L~~~Gi~v~~~~~p~~~~~~~~lRisv~~~~t~edid~li~~L~~~l~-~l~~~~~  449 (502)
T 3hbx_A          393 DMLRRYGWIVPAYTMPPNAQHITVLRVVIREDFSRTLAERLVIDIEKVMR-ELDELPS  449 (502)
T ss_dssp             HHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHTCC-
T ss_pred             HHHHhCCcEEeeccCCcccCCceEEEEEeCCCCCHHHHHHHHHHHHHHHH-HHHhCcc
Confidence            9999999987431       236899999999999999999999999998 7655443

>1rv3_A Serine hydroxymethyltransferase, cytosolic; one-carbon metabolism; HET: GLY PLP; 2.40A {Oryctolagus cuniculus} SCOP: c.67.1.4 PDB: 1rv4_A* 1rvu_A* 1rvy_A* 1ls3_A* 1cj0_A* 1bj4_A* 1eji_A*

Probab=99.85  E-value=2.4e-20  Score=179.46  Aligned_cols=292  Identities=14%  Similarity=0.096  Sum_probs=180.2

Q ss_pred             HHHHHHhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccccc
Q 017259           25 VFAERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        25 ~l~~~l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      .+.+++++++|.+.     .++.+||++++.+++.++     .++|     |+|++.++.|.++...............+
T Consensus        94 ~~~~~~a~~~g~~~~~~~~~V~~~sGs~an~~~~~al-----l~pG-----D~Vl~~~~~~~~~~~~~~~~~~~~v~~~G  163 (483)
T 1rv3_A           94 LCQKRALQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-----VEPH-----GRIMGLDLPDGGHLTHGFMTDKKKISATS  163 (483)
T ss_dssp             HHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----TCTT-----CEEEEECGGGTCCGGGCCBCSSCBCSHHH
T ss_pred             HHHHHHHHHhCCCcccCceEEEECCcHHHHHHHHHHh-----cCCC-----CEEEEecCccCcCcchhhhhcccCccccc
Confidence            34488888887762     255666668888888877     5677     99999999976654322211000000000


Q ss_pred             --CCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCc
Q 017259          100 --FGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLA  175 (374)
Q Consensus       100 --~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~  175 (374)
                        +.++..++..-.+ .|+++|++++++.  ++++|++ +..+++ .+.+    +++|.++|++||++||+|++|+ |+.
T Consensus       164 ~~~~~v~~~~~~~~~~iD~d~le~~i~~~--~tklIi~-~~sn~~-~~~d----l~~i~~ia~~~g~~livD~ah~~g~~  235 (483)
T 1rv3_A          164 IFFESMAYKVNPDTGYIDYDRLEENARLF--HPKLIIA-GTSCYS-RNLD----YGRLRKIADENGAYLMADMAHISGLV  235 (483)
T ss_dssp             HHSEEEEECBCTTTCSBCHHHHHHHHHHH--CCSEEEE-CCSSCC-SCCC----HHHHHHHHHHTTCEEEEECTTTHHHH
T ss_pred             ceEEEEECccccCCCcCCHHHHHHHHhhc--CCcEEEE-eCCcCC-CcCC----HHHHHHHHHHcCCEEEEEccchhccc
Confidence              0000000000001 2799999999743  5778888 665555 6666    9999999999999999999987 432


Q ss_pred             ccccC-cccccCCCCCcEE--EecccccCCccchhhheeCHHH---------------HhhcCCC-CCCCCCCCCHHHHH
Q 017259          176 RSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEV---------------MLCIQPG-EHGSTFGGNPLASA  236 (374)
Q Consensus       176 ~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~---------------~~~~~~~-~~~~~~~~~~~~~~  236 (374)
                      ..+.. ..+   . ..|++  |++|+++ |+ ++|++++++++               .+.+... ..+...+++...++
T Consensus       236 ~~~~~~~p~---~-~~div~~s~~K~l~-Gp-rgG~i~~~~~~~~~~~~~g~~~~y~~~~~~~~~~~~~~~g~~~~~~ia  309 (483)
T 1rv3_A          236 VAGVVPSPF---E-HCHVVTTTTHKTLR-GC-RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIA  309 (483)
T ss_dssp             HHTSSCCGG---G-TCSEEEEESSGGGC-CC-SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHH
T ss_pred             ccCCCCCCC---C-CCcEEEecCcccCC-CC-CceEEEEcchhhhhccccCcchhhHHHHHhhhhcCCcccCCccHHHHH
Confidence            22211 111   1 34665  5669985 55 67998887642               2222111 01112234455556


Q ss_pred             HHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEe
Q 017259          237 VAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA  313 (374)
Q Consensus       237 aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v  313 (374)
                      +..++++.+..   +++.++++++.+++.+.|++.+  + .++.. .....++++.+...  +.+..++.+.|.+.||.+
T Consensus       310 al~~Al~~~~~~~~~~~~~~~~~~~~~l~~~L~~~g--~-~~~~~-~~~~~~~~v~~~~~--g~~~~~~~~~L~~~gI~v  383 (483)
T 1rv3_A          310 GVAVALKQAMTPEFKEYQRQVVANCRALSAALVELG--Y-KIVTG-GSDNHLILVDLRSK--GTDGGRAEKVLEACSIAC  383 (483)
T ss_dssp             HHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTT--C-EEGGG-SCSSSEEEEEGGGG--TCCHHHHHHHHHHTTEEC
T ss_pred             HHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHhcC--C-EeccC-CCCCceEEEeccCC--CCCHHHHHHHHHhCCcEE
Confidence            66667776543   3566777778888888777652  1 11111 01224566666431  115778888898999999


Q ss_pred             c----cCC-----CCEEEEecCCCCC----HHHHHHHHHHHHHHHh
Q 017259          314 K----PTH-----DTIVRLTPPLSIS----SNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ~----~~~-----~~~lRi~~~~~~~----~e~i~~~~~~l~~~~~  346 (374)
                      .    |+.     .+++||+++...+    ++|+++++++|+++++
T Consensus       384 ~~~~~pg~~~~~~~~~iRis~~~~~t~g~~~edi~~~~~~l~~~l~  429 (483)
T 1rv3_A          384 NKNTCPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  429 (483)
T ss_dssp             EEECCSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             ecCCCCCCCcCCCCceEEeecCCcccCCCCHHHHHHHHHHHHHHHH
Confidence            8    642     4799999876555    9999999999999987

>2c0r_A PSAT, phosphoserine aminotransferase; pyridoxal-5'-phosphate, pyridine serine biosynthesis, amino-acid biosynthesis, pyridoxal phosphate; HET: PLP; 1.2A {Bacillus circulans} SCOP: c.67.1.4 PDB: 1bt4_A* 1w3u_A*

Probab=99.84  E-value=1.6e-20  Score=174.15  Aligned_cols=282  Identities=9%  Similarity=0.035  Sum_probs=181.1

Q ss_pred             cHHHHHHHHhcccCCC---eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcc--cccccccCCcc
Q 017259           22 KFPVFAERLTSMFGYD---MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRT--LAAISMSCDNE   95 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~---~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~--~~~~~~~~~~~   95 (374)
                      .++++++++++++|.+   ++ ++|+|++++++.++..+     .++|     |+|++..+.+++..  ..+...+ ...
T Consensus        50 ~~~~~~~~la~~~g~~~~~~~i~~t~g~t~a~~~~~~~l-----~~~g-----d~vl~~~~~~~~~~~~~~~~~~g-~~~  118 (362)
T 2c0r_A           50 VHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF-----LKEG-----QTANYVMTGSWASKALKEAKLIG-DTH  118 (362)
T ss_dssp             HHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHHHHHHHHHHS-CEE
T ss_pred             HHHHHHHHHHHHhCCCCCcEEEEECCCchHHHHHHHHhc-----CCCC-----CeEEEEecCcHhHHHHHHHHHhC-CeE
Confidence            4678899999988765   54 67899999999999988     5667     88888776654432  1111112 211


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      +.. ..+. .+...  ..|.++++  ++   ++++++++++++|++|.. .+    +++|      ||+++|+|++|+.+
T Consensus       119 ~v~-~~~~-~~~~~--~~~~~~~~--i~---~~t~~v~~~~~~n~tG~~~~~----l~~i------~~~~vivD~a~~~~  179 (362)
T 2c0r_A          119 VAA-SSEA-SNYMT--LPKLQEIQ--LQ---DNAAYLHLTSNETIEGAQFKA----FPDT------GSVPLIGDMSSDIL  179 (362)
T ss_dssp             EEE-ECGG-GTTCS--CCCGGGCC--CC---TTEEEEEEESEETTTTEECSS----CCCC------TTSCEEEECTTTTT
T ss_pred             EEe-cccc-ccccc--CCCHHHcc--cC---CCcCEEEEeCCcCccceeccc----cccc------CCCEEEEEChhhcc
Confidence            110 0000 00000  01333332  33   579999999889999986 44    5555      89999999999833


Q ss_pred             cccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCC------------CCCCCCCCHHHHHHHHH
Q 017259          175 ARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGE------------HGSTFGGNPLASAVAIA  240 (374)
Q Consensus       175 ~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~aa~~  240 (374)
                      .   ......  ..  |++  |++|.++ .. ++||+++++++.+.+....            ....++.+.+++.++.+
T Consensus       180 ~---~~~~~~--~~--d~~~~s~~K~~g-~~-G~G~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~t~~~~~~~a~~~  250 (362)
T 2c0r_A          180 S---RPFDLN--QF--GLVYAGAQKNLG-PS-GVTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNE  250 (362)
T ss_dssp             S---SCCCGG--GC--SEEEEETTTTTC-CS-SCEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHH
T ss_pred             C---Cccchh--HC--cEEEEecccccc-Cc-CcEEEEEcHHHHhhccccCchHHhHHHHhhccCcCCCchHHHHHHHHH
Confidence            1   111111  22  544  7789996 33 4688999988877765420            12345678888899999


Q ss_pred             HHHHHhh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          241 SLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       241 al~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      +++.+.+    +.+.++.+++++++.+.|+++...++ .... ....+.++++.+++.   .+..++++.|.++||.+.+
T Consensus       251 al~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~~~~-~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~L~~~gi~~~~  326 (362)
T 2c0r_A          251 VLKWIEERGGLEGVQQANRKKASLIYDAIDQSGGFYR-GCVDVDSRSDMNITFRLASE---ELEKEFVKASEQEGFVGLK  326 (362)
T ss_dssp             HHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSE-ESSCGGGBCSSEEEEECSCH---HHHHHHHHHHHHTTEESCB
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHcCCccc-cCCChHHcCCcEEEEEcCCc---chHHHHHHHHHHCCCeecc
Confidence            9987654    34556666666667666655420000 1000 012345566666532   2578899999999998877


Q ss_pred             CC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 TH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 ~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.  .+++||+++..+++++++++++.|+++++
T Consensus       327 g~~~~~~iRis~~~~~~~e~i~~l~~~l~~~~~  359 (362)
T 2c0r_A          327 GHRSVGGLRASIYNAVPYESCEALVQFMEHFKR  359 (362)
T ss_dssp             CCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            53  46799998888899999999999998876

>3vp6_A Glutamate decarboxylase 1; catalytic loop SWAP, lyase; HET: LLP HLD; 2.10A {Homo sapiens} PDB: 2okj_A* 2okk_A*

Probab=99.84  E-value=1.6e-19  Score=174.78  Aligned_cols=306  Identities=13%  Similarity=0.088  Sum_probs=179.6

Q ss_pred             HHHHHHHhcccCCC----eEEecCChHHHHHHHHHHHHHccc---ccccCCC-CccEEEEeccCCCCcccccccccCCcc
Q 017259           24 PVFAERLTSMFGYD----MVLPMNTGAEGVETALKLARKWGY---VKKKFSI-DEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        24 ~~l~~~l~~~~~~~----~~~~~~~gs~a~~~al~~~~~~~~---~~~G~~~-~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      +++.+++++++|.+    .+++++|||+|+..++.+++...+   .++|.+. .++.|++...+|+.....+. ..+...
T Consensus       138 ~~~~~~l~~~~g~~~~~~~~~~t~ggt~a~~~al~~a~~~~~~~~~~~G~~~~~~~~v~~s~~~H~s~~~~~~-~~g~g~  216 (511)
T 3vp6_A          138 QITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKTKGMAAVPKLVLFTSEQSHYSIKKAGA-ALGFGT  216 (511)
T ss_dssp             HHHHHHHHHHHTCCSSSCEEEEESSHHHHHHHHHHHHHHHHCTHHHHHCGGGSCCEEEEEETTSCTHHHHHHH-HTTSCG
T ss_pred             HHHHHHHHHHhCCCCCCCceEECCchHHHHHHHHHHHHHHhhhhhhhcCcccCCCeEEEECCCchHHHHHHHH-HcCCCC
Confidence            33555666666654    789999999999999998865310   1122110 12678877777544433333 222110


Q ss_pred             ccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           96 AIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                               ..+..++.+     |+++|+++|++.   +..+++++++.+.+++|.+.+    +++|.++|++||+++++
T Consensus       217 ---------~~~~~v~~d~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~~~~G~vd~----l~~I~~ia~~~~~~lhv  283 (511)
T 3vp6_A          217 ---------DNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDP----IQEIADICEKYNLWLHV  283 (511)
T ss_dssp             ---------GGEEEECBCTTSCBCHHHHHHHHHHHHHTTCEEEEEEEEBSCSSSCCBCC----HHHHHHHHHHHTCEEEE
T ss_pred             ---------CcEEEeecCCCCccCHHHHHHHHHHHHhcCCCcEEEEEecCCCCCccccc----HHHHHHHHHHcCCEEEE
Confidence                     012222222     899999999853   233889999999999999988    99999999999999999


Q ss_pred             eccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCH-HHHhhcCC---CCC---CC-----------
Q 017259          168 DEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADK-EVMLCIQP---GEH---GS-----------  226 (374)
Q Consensus       168 Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~-~~~~~~~~---~~~---~~-----------  226 (374)
                      |++|++.......+.....++ ..|.+++  +|+++++. ..|+++.++ .+......   ...   ..           
T Consensus       284 D~a~~~~~~~~~~~~~~~~g~~~aDsv~~~~hK~l~~p~-g~g~l~~~~~~~~~~~~~~~~~yl~~~~~~~~~~~~~~~~  362 (511)
T 3vp6_A          284 DAAWGGGLLMSRKHRHKLNGIERANSVTWNPHKMMGVLL-QCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDK  362 (511)
T ss_dssp             EETTGGGGGGCTTTGGGGTTGGGCSEEEECTTSTTCCCS-CCEEEEESSTTHHHHHHCCCCTTTCCSSCSSCGGGCCGGG
T ss_pred             EccchhhHhhChhhhhhccCCccCCEEEECcccccCCCc-CeEEEEEeCHHHHHHHhccCCccccCcccccccccCccCC
Confidence            999985322222112122222 4566655  49888766 777776654 44433211   000   00           


Q ss_pred             CC-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--EEEeeeEEEEeccCCC-----
Q 017259          227 TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEV--RGRGLFNAVEFDKTAL-----  295 (374)
Q Consensus       227 ~~-~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~~~g~~~~~~~~~~~~-----  295 (374)
                      +. .+..+.....+++++.+..   +++.++..++.+++.+.|++.    |++....  .+...++.|.+.....     
T Consensus       363 ~~~~~r~~~al~~~~al~~~g~~gl~~~~~~~~~~a~~l~~~L~~~----pg~~l~~~~~p~~~~v~f~~~p~~~~~~~~  438 (511)
T 3vp6_A          363 AIQCGRHVDIFKFWLMWKAKGTVGFENQINKCLELAEYLYAKIKNR----EEFEMVFNGEPEHTNVCFWYIPQSLRGVPD  438 (511)
T ss_dssp             SSCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC----TTEEESSSSCCSSSCEEEEECCGGGSSCCC
T ss_pred             CCCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEEecCCCCeEEEEEEEeCcccccccc
Confidence            00 0111223334444444433   345666667777777776553    2222111  2334445554421110     


Q ss_pred             --------chhHHHHHHHHHHCCeEecc-----CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          296 --------PVSAYDICLKMKERGILAKP-----THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 --------~~~~~~~~~~l~~~Gi~v~~-----~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                              .....++.+.|.++|+++..     ...+++|+++ +...+.+|++++++.|+++-+ ++
T Consensus       439 ~~~~~~~l~~~~~~l~~~L~~~G~~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~ll~~i~~~~~-~~  505 (511)
T 3vp6_A          439 SPQRREKLHKVAPKIKALMMESGTTMVGYQPQGDKANFFRMVISNPAATQSDIDFLIEEIERLGQ-DL  505 (511)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHTSCEEEEEEETTEEEEEEECCCCTTCCHHHHHHHHHHHHHHHC---
T ss_pred             chhHHHHHHHHHHHHHHHHHhcCCEEEEEEEeCCceEEEEEEecCCCCCHHHHHHHHHHHHHHHH-hh
Confidence                    01134689999999864432     1235799998 677899999999999998876 44

>2fyf_A PSAT, phosphoserine aminotransferase; PLP-dependent enzyme, dimer, structural genomics; HET: PLP; 1.50A {Mycobacterium tuberculosis} PDB: 3vom_A*

Probab=99.84  E-value=7.6e-21  Score=178.73  Aligned_cols=275  Identities=10%  Similarity=0.044  Sum_probs=176.7

Q ss_pred             cHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccc--cccccCCcc
Q 017259           22 KFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLA--AISMSCDNE   95 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~--~~~~~~~~~   95 (374)
                      ..+++++++++++|.+   ++++ |+||++|++.+++.+.     ++|      .+++ ...+|+....  +....    
T Consensus        79 ~~~~~~~~la~~~g~~~~~~i~~~t~g~t~al~~~~~~l~-----~~g------v~~v-~~~~~~~~~~~~~~~~~----  142 (398)
T 2fyf_A           79 LVGRVRSGLAELFSLPDGYEVILGNGGATAFWDAAAFGLI-----DKR------SLHL-TYGEFSAKFASAVSKNP----  142 (398)
T ss_dssp             HHHHHHHHHHHHTTCCTTCEEEEEETCHHHHHHHHHHHTC-----SSC------EEEE-ECSHHHHHHHHHHHHCT----
T ss_pred             HHHHHHHHHHHHhCCCCCceEEEeCCchhHHHHHHHHHhc-----CCC------eEEE-eCCHHHHHHHHHHHHhC----
Confidence            4678999999988764   7888 9999999999998872     222      1222 4444442111  11110    


Q ss_pred             ccccCCCCCCCceeccCCC--HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           96 AIRGFGPLLPGHLKVDFGD--ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d--~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                             +...+..++.++  ..+.  .++   ++++++++++++|++|.+.+    +++|.++   +|+++|+||+|+.
T Consensus       143 -------~g~~~~~v~~~~g~~~~~--~i~---~~~~~v~~~~~~nptG~~~~----~~~i~~~---~~~~vivD~a~~~  203 (398)
T 2fyf_A          143 -------FVGEPIIITSDPGSAPEP--QTD---PSVDVIAWAHNETSTGVAVA----VRRPEGS---DDALVVIDATSGA  203 (398)
T ss_dssp             -------TSCCCEEEECCTTCCCCC--CCC---TTCSEEEEESEETTTTEECC----CCCCTTC---C-CEEEEECTTTT
T ss_pred             -------CCCceEEEecCCCCCCCc--ccc---CCCCEEEEeCcCCCcceecc----hHHhhhh---cCCeEEEEecccc
Confidence                   001111222110  0000  122   57888988889999999987    6666665   8999999999985


Q ss_pred             CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCC----------CC----------CCC-CCCC
Q 017259          174 LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQP----------GE----------HGS-TFGG  230 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~----------~~----------~~~-~~~~  230 (374)
                      +..   .....    .+|++  +++|.++++. ++|++++++++.+.+..          ..          .+. .++.
T Consensus       204 ~~~---~~~~~----~~di~~~s~sK~~~~~g-g~g~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  275 (398)
T 2fyf_A          204 GGL---PVDIA----ETDAYYFAPQKNFASDG-GLWLAIMSPAALSRIEAIAATGRWVPDFLSLPIAVENSLKNQTYNTP  275 (398)
T ss_dssp             TTS---CCCGG----GCSEEEECTTSTTCSCS-SEEEEEECHHHHHHHHHHHHTTCCCCGGGCHHHHHHHHTTTCCSSCC
T ss_pred             CCc---ccCcc----cCcEEEEecCcccCCCC-ceEEEEECHHHHHHhhcccccCCCCCcEEehHHHhhhcccCCCCCCC
Confidence            422   11111    24666  5569999765 68899999888776521          00          012 2355


Q ss_pred             CHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeE--E--EEeeeEEEEeccCCCchhHHHH
Q 017259          231 NPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEV--R--GRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~--~--~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      +..++.++.++++.+.+.    ++.++.+++++++.+.|+++    |++....  +  ..+.++++.++...   +..++
T Consensus       276 ~~~~~~a~~~al~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~~~~~~~~~~~~~~~~~~~---~~~~l  348 (398)
T 2fyf_A          276 AIATLALLAEQIDWLVGNGGLDWAVKRTADSSQRLYSWAQER----PYTTPFVTDPGLRSQVVGTIDFVDDV---DAGTV  348 (398)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHS----TTEEESCCSGGGBCSSEEEEEECTTS---CHHHH
T ss_pred             CHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHc----CCceeccCChhhcCCcEEEEECCCCC---CHHHH
Confidence            777777788888765443    34566666677777766654    2221111  1  12337888886433   67899


Q ss_pred             HHHHHHCCeEeccCC----CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          303 CLKMKERGILAKPTH----DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       303 ~~~l~~~Gi~v~~~~----~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.|.++||.++++.    .+++||+++..++++|+++++++|+++++
T Consensus       349 ~~~L~~~gI~v~~g~~~~~~~~iRis~~~~~t~e~i~~~~~~l~~~l~  396 (398)
T 2fyf_A          349 AKILRANGIVDTEPYRKLGRNQLRVAMFPAVEPDDVSALTECVDWVVE  396 (398)
T ss_dssp             HHHHHHTTCBCCSCCTTTCSSEEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCcEEecCcccCCCCEEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            999999999998742    47999998888899999999999999887

>2hox_A ALLIIN lyase 1; cysteine sulphoxide lyase, ALLIINASE; HET: NAG FUC BMA P1T; 1.40A {Allium sativum} SCOP: c.67.1.1 PDB: 2hor_A* 1lk9_A*

Probab=99.84  E-value=5.2e-21  Score=181.35  Aligned_cols=279  Identities=9%  Similarity=-0.009  Sum_probs=178.5

Q ss_pred             HHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHc---ccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           23 FPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKW---GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        23 ~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~---~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      ..+|++.+++++        ..+++++|+|+++++..++.++...   ...++|     |+|++..|+|.++.......+
T Consensus       102 ~~~lr~aia~~~~~~~~~~~~~~~iv~t~G~~~al~~~~~~l~~~~~~~~~~~G-----d~Vlv~~P~y~~~~~~~~~~g  176 (427)
T 2hox_A          102 SFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPE-----SKVVAHAPFYPVFREQTKYFD  176 (427)
T ss_dssp             CHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCC-----EEEEECSSCCHHHHHHHHHSC
T ss_pred             hHHHHHHHHHHHHHhCCcCCCCCEEEEeCCHHHHHHHHHHHHhhccccccCCCC-----CEEEEeCCCcccHHHHHHHcC
Confidence            566777777655        2568999999999999999887100   002355     999999999977655544433


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...             .... .|+++|+++++   ++++++++++++||+|.+.+  +.+       +  ++..|.|+++
T Consensus       177 ~~~-------------~~~~-~d~~~l~~~~~---~~~k~v~l~~p~NPtG~~~~--~~l-------~--~~~~i~d~~~  228 (427)
T 2hox_A          177 KKG-------------YVWA-GNAANYVNVSN---PEQYIEMVTSPNNPEGLLRH--AVI-------K--GCKSIYDMVY  228 (427)
T ss_dssp             BTT-------------EEEE-EEGGGGTTCSC---GGGEEEEEESSCTTTCCCCC--CSS-------T--TCEEEEECTT
T ss_pred             Cee-------------eeec-CCHHHHHHhhc---CCceEEEEcCCCCCcccccH--HHH-------c--CCCEEEeecc
Confidence            221             1111 16777776665   36788888888999998884  322       2  5667788776


Q ss_pred             cCCcccccCccccc-CCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHh--
Q 017259          172 SGLARSGRMLASDW-EEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIR--  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~-~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~--  246 (374)
                      .+    ........ .+...-+.||||.++ +|+ |+||+++ ++++.+.+........++.+.+++.++.++++...  
T Consensus       229 ~~----~~~s~~~~~~~~~i~~~S~SK~~g~~G~-RiG~~~~~~~~l~~~l~~~~~~~~~~~~~~~q~a~~~~L~~~~~~  303 (427)
T 2hox_A          229 YW----PHYTPIKYKADEDILLFTMSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVAM  303 (427)
T ss_dssp             CS----TTTSCCCSCBCCSEEEEEHHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHH
T ss_pred             cC----CCCCccccCCCceEEEEeChhcCCCCCc-eEEEEEECCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHhhcchhh
Confidence            42    11101111 111122348999998 799 9999998 58888887754333446778899988888887532  


Q ss_pred             -------hhcHHHHHHHHHHHHHHHHHHHHHhCCCcee--------------eEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          247 -------DEKLAERSAHLGEELRQHLFKIQQQFPNYVK--------------EVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       247 -------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--------------~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                             .+++.++.++..+..++.+.+....++++..              ..+..+.++|+.++.     +..++++.
T Consensus       304 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~g~~~~~~~~~~~~~~~~~~~p~~g~f~~~~~~~-----~~~~~~~~  378 (427)
T 2hox_A          304 VKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEW-----EEDKDCYQ  378 (427)
T ss_dssp             HHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECS-----GGGCSHHH
T ss_pred             hccccchhHHHHHHHHHHHHHHHHHHHHHHHhCcCccccccccccccccccccCCCCceEEEEECCC-----cHHHHHHH
Confidence                   1233333333333333334333333222211              012236778888864     24567777


Q ss_pred             HH-HCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MK-ERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~-~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+ ++||.++++     ..+++|+++.  .+++++++++++|+++++
T Consensus       379 ll~~~gI~v~pg~~f~~~~~~~Ris~~--~~~e~l~~~l~~l~~~~~  423 (427)
T 2hox_A          379 TFQNGRINTQNGVGFEASSRYVRLSLI--KTQDDFDQLMYYLKDMVK  423 (427)
T ss_dssp             HHHHTTEECEEGGGGTSCTTEEEEECS--SCHHHHHHHHHHHHHHHT
T ss_pred             HHHHCCEEEcCCCccCCCCCEEEEEec--CCHHHHHHHHHHHHHHHh
Confidence            76 789999885     2689999965  588999999999999887

>1js3_A DDC;, DOPA decarboxylase; carbidopa, parkinson'S disease, vitamin; HET: PLP 142; 2.25A {Sus scrofa} SCOP: c.67.1.6 PDB: 1js6_A* 3rch_A* 3rbl_A 3rbf_A*

Probab=99.83  E-value=2.9e-19  Score=172.27  Aligned_cols=295  Identities=11%  Similarity=0.035  Sum_probs=176.8

Q ss_pred             HHHHHHhcccCCC-----------eEEecCChHHHHHHHHHHHHHccccc----c-cCC------CCccEEEEeccCCCC
Q 017259           25 VFAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVK----K-KFS------IDEAIIVSCCGCFHG   82 (374)
Q Consensus        25 ~l~~~l~~~~~~~-----------~~~~~~~gs~a~~~al~~~~~~~~~~----~-G~~------~~~~~vi~~~~~yhg   82 (374)
                      ++.+++++++|.+           .+++|+|||+|+..++.+++... .+    + | +      .++..|++..++|+.
T Consensus       117 ~~~~~la~l~g~~~~~~~~~~~~~~~v~t~ggTeA~~~al~~~~~~~-~~~~~~~~g-d~~~~~~~~~~~v~~s~~~h~s  194 (486)
T 1js3_A          117 VMMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKV-VRRLQAASP-GLTQGAVLEKLVAYASDQAHSS  194 (486)
T ss_dssp             HHHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHH-HHHHHHHST-TCCHHHHHHHEEEEEETTCCHH
T ss_pred             HHHHHHHHHhCCCchhcccCCCCCCeEEcCCcHHHHHHHHHHHHHHH-hhhhhccCc-cchhcccCCCEEEEECCCCcHH
Confidence            4555667766665           47999999999999998876421 11    0 2 0      001236777777655


Q ss_pred             cccccccccCCccccccCCCCCCCceeccC-----CCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           83 RTLAAISMSCDNEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        83 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      ....+...+..             +..++.     -|+++|+++|++..   ..+.+++++.+.+++|.+.+    +++|
T Consensus       195 ~~~~~~~~G~~-------------v~~v~~d~~~~~d~~~L~~~i~~~~~~g~~p~~vv~~~~~n~tG~~~~----l~~I  257 (486)
T 1js3_A          195 VERAGLIGGVK-------------LKAIPSDGKFAMRASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEV  257 (486)
T ss_dssp             HHHHHHHHTCE-------------EEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHH
T ss_pred             HHHHHHhCCCc-------------eEEeecCCCCCCCHHHHHHHHHHHHhCCCCceEEEEeCCCCCCCCCCC----HHHH
Confidence            43333322211             122222     18999999997421   12357777778888998888    9999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEe--cccccCCccchhhheeCHH--HHhhcCCC---CCC-
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVIL--GKALGGGVIPVSAVLADKE--VMLCIQPG---EHG-  225 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~--sK~~~~G~~~~G~~~~~~~--~~~~~~~~---~~~-  225 (374)
                      .++|++||+++++|++|+++......+.....++ ..|.+++  +|.+++++ ++|+++.+++  +.+.+...   ... 
T Consensus       258 ~~la~~~~~~lhvD~a~g~~~~~~~~~~~~~~g~~~adsi~~~~hK~~~~p~-~~G~l~~~~~~~l~~~~~~~~~yl~~~  336 (486)
T 1js3_A          258 GPICHEEDIWLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHS  336 (486)
T ss_dssp             HHHHHHTTCEEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC---------
T ss_pred             HHHHHHcCCEEEEehhhHHHHHHCHHHHHHhcCccccCeeEEchhhhcCCCc-ceEEEEEeCHHHHHHHhcCCchhhCCC
Confidence            9999999999999999986422111111111121 3466655  49888777 8899887643  23444210   000 


Q ss_pred             ----------------CCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeE
Q 017259          226 ----------------STFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFN  286 (374)
Q Consensus       226 ----------------~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~  286 (374)
                                      .+.....+.+.   ++++.+..+   ++.++..++.+++.+.|++.    |++....++...++
T Consensus       337 ~~~~~~~~~~~~~~~~~~rr~~~~~~~---~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~~~~~~~~~~~~~v  409 (486)
T 1js3_A          337 HQGSGLITDYRHWQLPLGRRFRSLKMW---FVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTLGLV  409 (486)
T ss_dssp             ---CCSCCCGGGSSSCSCCCCTHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCSSEE
T ss_pred             cccccCCCCccccCCCCCCchhHHHHH---HHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEeCCCceeEE
Confidence                            00012333333   344433332   45566666677777766653    22222112345566


Q ss_pred             EEEeccCCCchhHHHHHHHHHHCCeEec-c---CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccC
Q 017259          287 AVEFDKTALPVSAYDICLKMKERGILAK-P---THDTIVRLTP-PLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~l~~~Gi~v~-~---~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|.++..  .....++.+.|.++|+++. +   .+.+++|+++ ....+++++++++++|+++++ ++
T Consensus       410 ~f~~~~~--~~~~~~l~~~L~~~g~~~~~~~~~~~~~~lRi~~~~~~~t~~di~~~~~~l~~~~~-~~  474 (486)
T 1js3_A          410 CFRLKGS--DGLNEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-EL  474 (486)
T ss_dssp             EEEESSC--HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             EEEecCh--HHHHHHHHHHHHhcCCEEEEEEEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            6666432  0125789999998886543 2   2357999996 445789999999999999987 55

>4e1o_A HDC, histidine decarboxylase; lyase; HET: PLP PVH; 1.80A {Homo sapiens}

Probab=99.83  E-value=4.1e-19  Score=170.87  Aligned_cols=299  Identities=11%  Similarity=0.037  Sum_probs=178.5

Q ss_pred             HHHHHhcccCCC------------eEEecCChHHHHHHHHHHHHHccccc---ccCC------CCccEEEEeccCCCCcc
Q 017259           26 FAERLTSMFGYD------------MVLPMNTGAEGVETALKLARKWGYVK---KKFS------IDEAIIVSCCGCFHGRT   84 (374)
Q Consensus        26 l~~~l~~~~~~~------------~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~------~~~~~vi~~~~~yhg~~   84 (374)
                      +.+++++.+|.+            ..++++|||+|+..++.+++.....+   .|..      ..+++|++...+++...
T Consensus       123 v~~~l~~l~g~~~~~~~~~~~~~~~g~~~~ggt~an~~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~v~~s~~~H~s~~  202 (481)
T 4e1o_A          123 VMDWLAKMLGLPEHFLHHHPSSQGGGVLQSTVSESTLIALLAARKNKILEMKTSEPDADESSLNARLVAYASDQAHSSVE  202 (481)
T ss_dssp             HHHHHHHHHTCCGGGCTTCTTCBCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHTTEEEEEETTSCHHHH
T ss_pred             HHHHHHHHhCCChhhhccccCCCCceEEeCchHHHHHHHHHHHHHHHHHHhhhcCcccccccccCCeEEEEcCcchHHHH
Confidence            444556666654            56999999999999999987542110   0100      01267777777754433


Q ss_pred             cccccccCCccccccCCCCCCCceeccCC-----CHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           85 LAAISMSCDNEAIRGFGPLLPGHLKVDFG-----DITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                       .+..+.+.            .+..++.+     |+++|+++|++.   +..+.+++++.+.+++|.+.+    +++|.+
T Consensus       203 -~~~~~~g~------------~~~~v~~~~~~~~d~~~Le~~i~~~~~~g~~~~~vv~~~~~t~~G~id~----l~~I~~  265 (481)
T 4e1o_A          203 -KAGLISLV------------KMKFLPVDDNFSLRGEALQKAIEEDKQRGLVPVFVCATLGTTGVCAFDC----LSELGP  265 (481)
T ss_dssp             -HHHHHHTC------------EEEEECCCTTSCCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHH
T ss_pred             -HHHHhCCC------------ceEEEEcCCCCcCCHHHHHHHHHHHHhCCCCcEEEEEecCCCCCcCcCC----HHHHHH
Confidence             33223321            12222222     899999999853   123677777778888898888    999999


Q ss_pred             HHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCH-HHH-hhcCCC--CC-----
Q 017259          157 LCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADK-EVM-LCIQPG--EH-----  224 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~-~~~-~~~~~~--~~-----  224 (374)
                      +|++||+++++|++|++.......+.....++ ..|.++++  |++++.. ..|+++.++ ... +.+...  ..     
T Consensus       266 la~~~~~~lhvDaA~g~~~~~~~~~~~~~~gi~~aDsi~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~  344 (481)
T 4e1o_A          266 ICAREGLWLHIDAAYAGTAFLCPEFRGFLKGIEYADSFTFNPSKWMMVHF-DCTGFWVKDKYKLQQTFSVNPIYLRHANS  344 (481)
T ss_dssp             HHHHHTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESBHHHHHTTTCCCCGGGCCTTT
T ss_pred             HHHHcCCeEEeehhhHHHHHhChhhHHHhcCcccCCEEEEChHHhcCCCC-ceEEEEEeCHHHHHHHhcCCchhccCccc
Confidence            99999999999999985422222112111232 34777664  9888766 667766554 332 222110  00     


Q ss_pred             CC-------CC-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccC
Q 017259          225 GS-------TF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKT  293 (374)
Q Consensus       225 ~~-------~~-~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~  293 (374)
                      ..       +. .+..+......++++.+..   +++.++..++.+++.+.|++.    |++....++...+++|.++..
T Consensus       345 ~~~~~~~~~~~~~~r~~~~l~~~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~~~~~~~~~~v~f~~~~~  420 (481)
T 4e1o_A          345 GVATDFMHWQIPLSRRFRSVKLWFVIRSFGVKNLQAHVRHGTEMAKYFESLVRND----PSFEIPAKRHLGLVVFRLKGP  420 (481)
T ss_dssp             TTSCCGGGGSSSSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC----TTEECCSCCCSSEEEEEESSC
T ss_pred             CCCCCcccccccCCCCccHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEEecCCceeEEEEEeCCc
Confidence            00       00 0101122333444444333   345666666777777766554    222221233456677776432


Q ss_pred             CCchhHHHHHHHHHHCCe-Eecc---CCCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccC
Q 017259          294 ALPVSAYDICLKMKERGI-LAKP---THDTIVRLTPPL-SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       294 ~~~~~~~~~~~~l~~~Gi-~v~~---~~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                        .....++.+.|.++|+ ++.+   .+..++|+++.. ..+++|+++++++|+++.+ ++
T Consensus       421 --~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~l  478 (481)
T 4e1o_A          421 --NSLTENVLKEIAKAGRLFLIPATIQDKLIIRFTVTSQFTTRDDILRDWNLIRDAAT-LI  478 (481)
T ss_dssp             --HHHHHHHHHHHHHHCSSBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             --hHHHHHHHHHHHhCCeEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence              1146789999999884 4443   235689999664 4489999999999999887 54

>3k40_A Aromatic-L-amino-acid decarboxylase; PLP dependent protein, alpha beta protein, alternative splicing, catecholamine biosynthesis, lyase; HET: LLP; 1.75A {Drosophila melanogaster} SCOP: c.67.1.6

Probab=99.83  E-value=7.9e-19  Score=168.51  Aligned_cols=299  Identities=11%  Similarity=-0.001  Sum_probs=179.5

Q ss_pred             HHHHHhcccCCC-----------eEEecCChHHHHHHHHHHHHHccccc---ccCC------CCccEEEEeccCCCCccc
Q 017259           26 FAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVK---KKFS------IDEAIIVSCCGCFHGRTL   85 (374)
Q Consensus        26 l~~~l~~~~~~~-----------~~~~~~~gs~a~~~al~~~~~~~~~~---~G~~------~~~~~vi~~~~~yhg~~~   85 (374)
                      +.+++++.+|.+           ..++|+|||+|+..|+.+++.....+   .|..      ..+++|++...+++....
T Consensus       118 v~~~l~~~~g~~~~~~~~~~~~~~gv~t~ggt~anl~al~~ar~~~~~~~~~~~~~~~~~~~~~~~~vi~s~~~H~s~~~  197 (475)
T 3k40_A          118 MMDWLGKMLELPAEFLACSGGKGGGVIQGTASESTLVALLGAKAKKLKEVKELHPEWDEHTILGKLVGYCSDQAHSSVER  197 (475)
T ss_dssp             HHHHHHHHTTCCGGGCGGGTSSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHCTTSCHHHHHHHEEEEEETTSCHHHHH
T ss_pred             HHHHHHHHhCCCchhccccCCCCCeEEcCchHHHHHHHHHHHHHHHHHHhhccCcccccccccCCeEEEECCCchHHHHH
Confidence            444556666665           58999999999999999987542110   0100      012577787777544333


Q ss_pred             ccccccCCccccccCCCCCCCceeccC----CCHHHHHHHHHhc---CCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           86 AAISMSCDNEAIRGFGPLLPGHLKVDF----GDITALEKIFKES---GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~---~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      .+ .+.+.            .+..++.    -|+++|+++|++.   +..+.+++++.+.+++|.+.+    +++|.++|
T Consensus       198 ~~-~~~g~------------~~~~v~~d~~~~d~~~L~~~i~~~~~~~~~~~~v~~~~~~t~~G~~~~----l~~I~~la  260 (475)
T 3k40_A          198 AG-LLGGV------------KLRSVQSENHRMRGAALEKAIEQDVAEGLIPFYAVVTLGTTNSCAFDY----LDECGPVG  260 (475)
T ss_dssp             HH-HHHTC------------EEEEECCBTTBCCHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHH
T ss_pred             HH-HHcCC------------ceEEEECCCCCcCHHHHHHHHHHHHHCCCccEEEEEEecCCCCcCcCC----HHHHHHHH
Confidence            32 23221            1222222    2899999999853   223677777777888899988    99999999


Q ss_pred             HhcCCEEEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHH-HH-hhcCCC--CC-----C-
Q 017259          159 SKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE-VM-LCIQPG--EH-----G-  225 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~-~~-~~~~~~--~~-----~-  225 (374)
                      ++||+++++|++|++.......+.....++ ..|.++++  |++++.. .+|+++.++. .. +.+...  ..     + 
T Consensus       261 ~~~~~~lhvD~A~~~~~~~~~~~~~~~~gi~~~Ds~~~~~hK~l~~p~-g~g~l~~~~~~~l~~~~~~~~~yl~~~~~~~  339 (475)
T 3k40_A          261 NKHNLWIHVDAAYAGSAFICPEYRHLMKGIESADSFNFNPHKWMLVNF-DCSAMWLKDPSWVVNAFNVDPLYLKHDMQGS  339 (475)
T ss_dssp             HHTTCEEEEECTTGGGGGGSGGGGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESSGGGC------------------
T ss_pred             HHhCCeEEEeHHhHHHHHhCHhhHHHhcCcccCCEEEECchhccCCCC-ceEEEEEeCHHHHHHHhcCCccccCCCcCCC
Confidence            999999999999985322221111111222 35777665  9888776 7777766543 32 222110  00     0 


Q ss_pred             ------CCCCCC-HHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          226 ------STFGGN-PLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       226 ------~~~~~~-~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                            .+...+ .+......++++.+..   +++.++..++.+++.+.|++.    |++....++...++.|.++..  
T Consensus       340 ~~~~~~~~~~~sr~~~~l~l~~al~~~g~~g~~~~~~~~~~~a~~l~~~L~~~----~g~~l~~~~~~~iv~f~~~~~--  413 (475)
T 3k40_A          340 APDYRHWQIPLGRRFRALKLWFVLRLYGVENLQAHIRRHCNFAKQFGDLCVAD----SRFELAAEINMGLVCFRLKGS--  413 (475)
T ss_dssp             ---------CCCGGGTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS----TTEEESSCCBTTEEEEEESSC--
T ss_pred             CCCcccccccCCCcccHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC----CCEEEecCCceEEEEEEeCCc--
Confidence                  000011 1223334444554433   355666777777777777664    222222223456667766432  


Q ss_pred             chhHHHHHHHHHHCCeEe-cc---CCCCEEEEecCC-CCCHHHHHHHHHHHHHHHhccC
Q 017259          296 PVSAYDICLKMKERGILA-KP---THDTIVRLTPPL-SISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v-~~---~~~~~lRi~~~~-~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .....++.++|.++|.++ .+   .+..++|+++.. ..+++|+++++++|+++.+ ++
T Consensus       414 ~~~~~~l~~~L~~~g~~~~~~~~~~g~~~lR~~~~~~~tt~~di~~~~~~i~~~~~-~~  471 (475)
T 3k40_A          414 NERNEALLKRINGRGHIHLVPAKIKDVYFLRMAICSRFTQSEDMEYSWKEVSAAAD-EM  471 (475)
T ss_dssp             HHHHHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             hHHHHHHHHHHHhCCcEEEEeeEECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            114678999999988643 33   245789999653 4589999999999999987 54

>3ht4_A Aluminum resistance protein; lyase, putative cystathionine BEAT-lyase, aluminium resistance protein, Q81A77_baccr, NESG, BCR213; 2.90A {Bacillus cereus atcc 14579}

Probab=99.82  E-value=2.6e-19  Score=169.31  Aligned_cols=265  Identities=11%  Similarity=0.086  Sum_probs=171.0

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~   93 (374)
                      |+.+.++++++++++++|.+..+.   ++||++|+..++..+     .++|     |+|++.+ +.|.+ ......+++.
T Consensus        62 y~~~~~~~l~~~la~~~g~~~~~~~i~~~sGt~Ai~~al~al-----~~~G-----d~Vl~~~~~~y~~-~~~~~~l~g~  130 (431)
T 3ht4_A           62 YDDIGRDTLEKVYADVFGAEAGLVRPQIISGTHAISTALFGI-----LRPG-----DELLYITGKPYDT-LEEIVGVRGK  130 (431)
T ss_dssp             CSCHHHHHHHHHHHHHTTCSEECCBTTSCSHHHHHHHHHHTT-----CCTT-----CEEEECSSSCCTT-HHHHTTSSSC
T ss_pred             CChhhHHHHHHHHHHHhCCCcccccceeeCHHHHHHHHHHHh-----CCCC-----CEEEEeCCCCchh-HHHHHhhccc
Confidence            445667889999999999887655   669999999999876     5677     9999998 77644 3322222211


Q ss_pred             ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc-ccCCCCcccCChhHHHHHHHHHHh--cCCEE
Q 017259           94 NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP-IQGEAGVIIPPDGYLKAVRDLCSK--YNILM  165 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~-~~~~~g~~~~~~~~l~~l~~l~~~--~~i~l  165 (374)
                        ++..+......+..++.     .|+++++++++   ++++++++++ ++|++|... +...+++|.++|++  +|+++
T Consensus       131 --~~~~~~~~G~~~~~v~~~~~~~~d~e~l~~~l~---~~tk~V~i~~sp~np~~~~~-~~~~l~~i~~la~~~~~~~~l  204 (431)
T 3ht4_A          131 --GVGSFKEYNIGYNAVPLTEGGLVDFEAVAAAIH---SNTKMIGIQRSKGYATRPSF-TISQIKEMIAFVKEIKPDVVV  204 (431)
T ss_dssp             --SSSCSGGGTCEEEECCBCTTSSBCHHHHHHHCC---TTEEEEEEECSCTTSSSCCC-CHHHHHHHHHHHHHHCTTCEE
T ss_pred             --ccchHHHcCCEEEEeCCCCCCCcCHHHHHhhcC---CCCeEEEEECCCCCCCCCcC-CHHHHHHHHHHHHhhCCCCEE
Confidence              11111111122333443     28999999887   5799999996 555555444 78889999999999  99999


Q ss_pred             EEeccccCCcccccCcccccCCCCCcEEEecccccCC--ccchhhheeCHHHHhhcCCC----CCCCCCCCCHHHHHHHH
Q 017259          166 IADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGG--VIPVSAVLADKEVMLCIQPG----EHGSTFGGNPLASAVAI  239 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G--~~~~G~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~aa~  239 (374)
                      |+||+|+++.....+..   .+.+..+.|+||+++||  . ++|++++++++.+.++..    ..+.+.+++...+.++.
T Consensus       205 ivDea~~~~~~~~~~~~---~g~Di~~~S~sK~lgg~~~~-~GG~v~~~~~li~~l~~~~~~~~~g~~~~~~~~~~~~~~  280 (431)
T 3ht4_A          205 FVDNCYGEFIEEQEPCH---VGADLMAGSLIKNPGGGIVK-TGGYIVGKEQYVEACAYRLTSPGIGAEAGASLYSLQEMY  280 (431)
T ss_dssp             EEECTTCTTSSSCCGGG---TTCSEEEEETTSGGGTTTCS-SCEEEEECHHHHHHHHHHHSCTTTTTSCSCCCSCSHHHH
T ss_pred             EEeCCChhhccCCCccc---cCCeEEEcCccccCCCCCCC-ceEEEEecHHHHHHHHHHhccCCcccccCccHHHHHHHH
Confidence            99999997643333221   23333344889999974  4 568899999888777531    12222222222233344


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG  310 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G  310 (374)
                      ..++.+  ....++..++.+++.+.|++..... | . ...+..+.++.+.+++..   ...++++.|.+..
T Consensus       281 ~~l~~~--~~~~~~~~~~a~~l~~~L~~~g~~v~p-~-~~~~~~~li~~i~l~~~~---~~~~~~~~l~~~~  345 (431)
T 3ht4_A          281 QGFFLA--PHVAGQALKGAIFTAAFLEKLGMNTSP-A-WNAPRTDLIQSVQFDDKD---RMIAFCQAIQYAS  345 (431)
T ss_dssp             HHHHHH--HHHHHHHHHHHHHHHHHHHHHTCCEES-C-TTSCCSSSCCEEECCCHH---HHHHHHHHHHHTS
T ss_pred             hHhhhH--HHHHHHHHHHHHHHHHHHHhCcCEecC-C-CCCCCccEEEEEEeCCHH---HHHHHHHHHHhcC
Confidence            555543  3456778888888989888775321 1 1 111233447777775432   5778999998873

>2a7v_A Serine hydroxymethyltransferase; structural genomics, structural genomics consortium, SGC; 2.04A {Homo sapiens} PDB: 3ou5_A

Probab=99.82  E-value=5.2e-19  Score=169.07  Aligned_cols=284  Identities=13%  Similarity=0.072  Sum_probs=171.4

Q ss_pred             HHHhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-------ccccCCcc
Q 017259           28 ERLTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-------ISMSCDNE   95 (374)
Q Consensus        28 ~~l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-------~~~~~~~~   95 (374)
                      +++++++|.+.     .++++||++|+..++..+     .++|     |+|++.++.|.|+....       ..+.+.. 
T Consensus       107 ~~~a~l~g~~~~~~~~~v~~~sGt~An~~al~al-----~~pG-----D~Vl~~~~~h~g~l~h~~~~~~~~i~~~g~~-  175 (490)
T 2a7v_A          107 RRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-----LQPH-----DRIMGLDLPDGGHLTHGYMSDVKRISATSIF-  175 (490)
T ss_dssp             HHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----CCSC-----EECCC---------------------------
T ss_pred             HHHHHHcCCCcccCceEEeCCchHHHHHHHHHHH-----cCCC-----CEecccCccccccccchhhhcchhHHHcCCe-
Confidence            88999998875     466779999999999988     6778     99999998875432211       1111110 


Q ss_pred             ccccCCCCCCCceec-cCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-C
Q 017259           96 AIRGFGPLLPGHLKV-DFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-G  173 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~-~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~  173 (374)
                          +.+...++..- -..|+++++++++.+  +++++++....+  +...+    +++|.++|++||++|++|++|. |
T Consensus       176 ----~~~~~~~vd~~~~~iD~d~le~~l~~~--~~klIi~~~s~~--~~~~d----l~~i~~ia~~~g~~livD~Ah~~g  243 (490)
T 2a7v_A          176 ----FESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTSAY--ARLID----YARMREVCDEVKAHLLADMAHISG  243 (490)
T ss_dssp             ---------CCBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSSC--CSCCC----HHHHHHHHHHTTCEEEEECGGGHH
T ss_pred             ----EEEEecccccccCCcCHHHHHHHHhhc--CCcEEEEcCCCC--CCccc----HHHHHHHHHHcCCEEEEccccccc
Confidence                00111111100 012899999999754  456777654433  34555    9999999999999999999986 4


Q ss_pred             CcccccC-cccccCCCCCcEE--EecccccCCccchhhheeCHH---------------HHhhcCCCC-CCCCCCCCHHH
Q 017259          174 LARSGRM-LASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKE---------------VMLCIQPGE-HGSTFGGNPLA  234 (374)
Q Consensus       174 ~~~~g~~-~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~---------------~~~~~~~~~-~~~~~~~~~~~  234 (374)
                      +...|.. ..+.    ..|++  |++|+++| . ++|+++++++               +.+.++... .+...+++...
T Consensus       244 lv~~g~~~~~~~----~aDiv~~S~hK~l~G-p-~GG~i~~~~~~~~~~~~~~~~~~~~l~~~i~~~~~~g~qggp~~~~  317 (490)
T 2a7v_A          244 LVAAKVIPSPFK----HADIVTTTTHKTLRG-A-RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGPHNHA  317 (490)
T ss_dssp             HHHTTSSCCGGG----TCSEEEEESSGGGCS-C-SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSCCHHH
T ss_pred             cccCCcCCCCCC----CCCEEEECCcccCcc-c-cchheeeccchhcccccccchhhHHHHHHHHHHhcccCCCCchHHH
Confidence            3222221 1111    24655  66799864 4 6688887754               223333211 11222334455


Q ss_pred             HHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCe
Q 017259          235 SAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGI  311 (374)
Q Consensus       235 ~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi  311 (374)
                      +++..++++.+..   +++.+++.++.+++.+.|++.+..   ++.. ....+++++++...  +.+..++.+.|.+.||
T Consensus       318 iaAla~Al~~~~~~~~~~~~~~~~~na~~L~~~L~~~G~~---v~~~-~t~t~lv~vdl~~~--g~~~~~~~~~L~~~GI  391 (490)
T 2a7v_A          318 IAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS---LVSG-GTDNHLVLVDLRPK--GLDGARAERVLELVSI  391 (490)
T ss_dssp             HHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECTTT--TCCHHHHHHHHHHTTE
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHcCcE---EecC-CCCCeEEEEEeCCC--CCCHHHHHHHHHhCCe
Confidence            5555556665533   356778888899999988875311   1111 11246777777532  1257788899999999


Q ss_pred             Eecc----C-----CCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          312 LAKP----T-----HDTIVRLTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       312 ~v~~----~-----~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+..    +     .+..|||..+    ...+++|++++++.|.++++
T Consensus       392 ~v~~~~~p~d~~p~~~~~iRig~~a~t~~g~~~~d~~~~~~~i~~~l~  439 (490)
T 2a7v_A          392 TANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             ECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEecCccCCCCCCCCCCceEecccccccCCCCHHHHHHHHHHHHHHHH
Confidence            9963    2     3578999653    35789999999999988886

>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A {Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1 PDB: 1ord_A*

Probab=99.81  E-value=7.5e-19  Score=175.23  Aligned_cols=308  Identities=10%  Similarity=-0.026  Sum_probs=187.1

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCC-hHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-Cccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNT-GAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEA   96 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~-gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~   96 (374)
                      +.....++++.+++++|.+..++..+ +++++..++.++     .++|     |+|++..++|.+.......+.+ .+.+
T Consensus       171 ~~~~i~e~e~~lA~~~gae~~i~v~nGtt~an~~ai~al-----~~pG-----D~VLv~~~~H~S~~~~~~~l~Ga~~v~  240 (730)
T 1c4k_A          171 HEGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL-----VSNG-----DLVLFDRNNHKSVYNSALAMAGGRPVY  240 (730)
T ss_dssp             TBTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHTTTTCCEEEE
T ss_pred             ChHHHHHHHHHHHHHHCCCcEEEECCHHHHHHHHHHHHh-----cCCC-----CEEEEcCCchHHHHHHHHHHCCCEEEE
Confidence            34567899999999999987655544 558999998887     6678     9999999997655444122222 1111


Q ss_pred             cccCCCCCCCceeccCCCHHHH-----HHHHHhcCCc---E----EEEEEccccCCCCcccCChhHHHHHHHHHHhcCCE
Q 017259           97 IRGFGPLLPGHLKVDFGDITAL-----EKIFKESGDQ---I----AGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNIL  164 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~l-----e~~l~~~~~~---~----~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~  164 (374)
                      .... ....+... . -|+++|     +++++++.++   +    ++++++++ +++|.+.+    +++|.++|++||++
T Consensus       241 v~~~-~~~~~i~g-~-id~e~L~~~~le~~i~~~~~~~~~t~~~vklviv~~p-n~~G~v~d----l~~I~~la~~~g~~  312 (730)
T 1c4k_A          241 LQTN-RNPYGFIG-G-IYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLG-TYDGTIYN----AHEVVKRIGHLCDY  312 (730)
T ss_dssp             ECEE-ECTTCCEE-E-ECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESB-CTTSEEEC----HHHHHHHHGGGBSE
T ss_pred             EeCC-ccccCccC-C-CCHHHHhhhHHHHHhhcCCcccccccCCCeEEEEECC-CCCCeecC----HHHHHHHHHHcCCe
Confidence            1100 00000000 0 155666     8888753111   2    66666654 46898888    99999999999999


Q ss_pred             EEEeccccCC-cccc--c-Ccccc--cCCCC-Cc-EE--EecccccCCccchhhheeCHHHHh---------hcCCC-CC
Q 017259          165 MIADEIQSGL-ARSG--R-MLASD--WEEVR-PD-MV--ILGKALGGGVIPVSAVLADKEVML---------CIQPG-EH  224 (374)
Q Consensus       165 li~Dea~~~~-~~~g--~-~~~~~--~~~~~-~d-~~--s~sK~~~~G~~~~G~~~~~~~~~~---------~~~~~-~~  224 (374)
                      ||+||+|++. ...+  . .....  .++.+ ++ ++  |++|+++|.. ..|+++.+++...         .+... ..
T Consensus       313 livDeAh~~~~~f~~~~~g~~~l~~~~~g~D~~~~iv~~S~hK~L~g~~-~gg~I~v~~~~l~g~~~~i~~~~~~~~~~~  391 (730)
T 1c4k_A          313 IEFDSAWVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNL  391 (730)
T ss_dssp             EEEECTTCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHH
T ss_pred             EEEEcccccccccCcccCCcCcccccccCCCCCCEEEEECCCCCCCCCC-CEEEEEecchhhcCcccccCHHHHHHHHHH
Confidence            9999999742 2111  1 01111  12322 11 44  6679876422 2334544333210         11100 01


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCcee---eE-------------------
Q 017259          225 GSTFGGNPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVK---EV-------------------  279 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-------------------  279 (374)
                      ..+.+++...+++..++++.+..   .++.++..++.+++++.|++.   ++++..   ..                   
T Consensus       392 ~~stsp~~~~iaal~aA~~~l~~~~g~~~~~~~~~~a~~lr~~L~~~---i~g~~v~~p~~~~~~~~~~~~~~~~~~~~~  468 (730)
T 1c4k_A          392 FMSTSPFYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKA---GSMFRPFVPPVVNGKKWEDGDTEDMANNID  468 (730)
T ss_dssp             HSCSSCCHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHT---TCSSEESSCSEETTEEGGGSCHHHHTTCGG
T ss_pred             hCCCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHhhh---CCCeEEccccccccccccccccccccccch
Confidence            22345567777777777776654   356778888888888888761   111110   00                   


Q ss_pred             -------------E--EEe------eeEEEEecc--------CCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCC
Q 017259          280 -------------R--GRG------LFNAVEFDK--------TALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSIS  330 (374)
Q Consensus       280 -------------~--~~g------~~~~~~~~~--------~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~  330 (374)
                                   .  ..+      ..+.+..+.        ...+.++.++.++|.++||.+...+...+|++++...|
T Consensus       469 ~~~~~~~~~~~g~~~~~~~~~~idp~kv~i~~pg~~~~~g~~~~~g~~~~~l~~~L~e~GI~v~~~~~~~ir~~~s~g~t  548 (730)
T 1c4k_A          469 YWRFEKGAKWHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAET  548 (730)
T ss_dssp             GGBCCTTCTTTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCC
T ss_pred             hhccCccchhccccccCCcccccCCeEEEEEeCCcccccccccccCCCHHHHHHHHHHCCcEEEECCCCeEEEEeCCCCC
Confidence                         0  001      113343431        11133688999999999999988878999999999999


Q ss_pred             HHHHHHHHHHHHHHHhccC
Q 017259          331 SNELQEGSKALHDVLELDL  349 (374)
Q Consensus       331 ~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++++++++++|.++.+ .+
T Consensus       549 ~e~i~~Ll~aL~~i~~-~~  566 (730)
T 1c4k_A          549 PAKMNNLITQLLQLQR-LI  566 (730)
T ss_dssp             HHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHHHHHHHH-hc
Confidence            9999999999999887 54

>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate, PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A {Escherichia coli}

Probab=99.80  E-value=2.2e-18  Score=173.26  Aligned_cols=306  Identities=13%  Similarity=0.049  Sum_probs=193.2

Q ss_pred             CCcHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .....++++.+++++|.+.. ++++|+++|+..++.++     .++|     |+|++.+++|++........+..+.+..
T Consensus       204 ~g~v~~~ee~la~l~G~d~~i~~~~Gtt~a~~~~i~al-----~~~G-----D~Vlv~~~~h~s~~~~~~~~G~~~v~v~  273 (755)
T 2vyc_A          204 TGAFGESEKYAARVFGADRSWSVVVGTSGSNRTIMQAC-----MTDN-----DVVVVDRNCHKSIEQGLMLTGAKPVYMV  273 (755)
T ss_dssp             CHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHHCCEEEEEC
T ss_pred             ccHHHHHHHHHHHHhCCCceEEECCcHHHHHHHHHHHh-----cCCC-----CEEEECCCchHHHHHHHHHcCCEEEEEe
Confidence            34467788999999988865 45555568899999888     6678     9999999997665444333222222211


Q ss_pred             cCCCCCCC-ce-eccCC----CHHHHHHHHHhcCC-------cEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           99 GFGPLLPG-HL-KVDFG----DITALEKIFKESGD-------QIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        99 ~~~~~~~~-~~-~~~~~----d~~~le~~l~~~~~-------~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                          ...+ .. ....+    |+++++++++++++       ++++++++++ +++|.+.+    +++|.++|++||++|
T Consensus       274 ----~~~~~~g~~g~i~~~~~d~e~le~~i~~~~~~k~~~~~~~klvil~~p-n~~G~v~d----l~~I~~ia~~~~~~l  344 (755)
T 2vyc_A          274 ----PSRNRYGIIGPIYPQEMQPETLQKKISESPLTKDKAGQKPSYCVVTNC-TYDGVCYN----AKEAQDLLEKTSDRL  344 (755)
T ss_dssp             ----CCBCTTSCBCCCCGGGGSHHHHHHHHHHCTTTGGGTTCCCSCEEEESS-CTTSEEEC----HHHHHHHHTTTCSEE
T ss_pred             ----CCCCccccccccCcCCCCHHHHHHHHHhCccccccccCCCeEEEEECC-CCCceecC----HHHHHHHHHHcCCEE
Confidence                0000 00 00011    79999999986422       2235666554 57898888    999999999999999


Q ss_pred             EEeccccCCcccccCc-cccc-CC--CC---Cc---EEEecccccCCccchhhheeCHH--HH--hhcCCC-CCCCCCCC
Q 017259          166 IADEIQSGLARSGRML-ASDW-EE--VR---PD---MVILGKALGGGVIPVSAVLADKE--VM--LCIQPG-EHGSTFGG  230 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~-~~~~-~~--~~---~d---~~s~sK~~~~G~~~~G~~~~~~~--~~--~~~~~~-~~~~~~~~  230 (374)
                      ++||+|++....+..+ .... .+  .+   +.   +.|++|+++|.. ..|+++.+++  ..  ..+... ....+.++
T Consensus       345 ivDeA~~~~~~~~~~~~~~~~~~g~~aD~~~~~~iv~~S~hK~L~g~~-~g~~i~~~~~~~~i~~~~~~~~~~~~~s~sp  423 (755)
T 2vyc_A          345 HFDEAWYGYARFNPIYADHYAMRGEPGDHNGPTVFATHSTHKLLNALS-QASYIHVREGRGAINFSRFNQAYMMHATTSP  423 (755)
T ss_dssp             EEECTTCTTGGGCGGGTTSSSSCSCCCCCSSBEEEEEEETTTSSSCCT-TCEEEEEECCBTCCCHHHHHHHHHHTSCSSC
T ss_pred             EEECcCchhcccCcccCCcchhcCCcCCccCCCeEEEECccccccCcC-CeeeeeecCcccccCHHHHHHHHHHhCCCCH
Confidence            9999998431111110 0011 22  11   11   237779876432 3445555433  11  111110 12234456


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHh--------CCCcee--eEE-----------------
Q 017259          231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQ--------FPNYVK--EVR-----------------  280 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~--------~~~~~~--~~~-----------------  280 (374)
                      +.+.+++..++++.+..   +++.++..++.+++++.|+++...        + ....  ...                 
T Consensus       424 ~~~~iaal~aA~~~l~~~gg~~~~~~~~~~a~~~r~~L~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~  502 (755)
T 2vyc_A          424 LYAICASNDVAVSMMDGNSGLSLTQEVIDEAVDFRQAMARLYKEFTADGSWFF-KPWNKEVVTDPQTGKTYDFADAPTKL  502 (755)
T ss_dssp             CHHHHHHHHHHHHHHSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCC-EESSCSEEECTTTCCEEEGGGSCHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhcccccccccccee-eccCchhccccccccccccccccchh
Confidence            77888888888887654   367888999999999999887541        1 0000  000                 


Q ss_pred             -----------------------E-----EeeeEEEEeccC-C------CchhHHHHHHHHHHCCeEeccCCCCEEEEec
Q 017259          281 -----------------------G-----RGLFNAVEFDKT-A------LPVSAYDICLKMKERGILAKPTHDTIVRLTP  325 (374)
Q Consensus       281 -----------------------~-----~g~~~~~~~~~~-~------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~  325 (374)
                                             .     ....+.+.++.. .      .+.++.++.++|.++||.+...+.+.+|+.+
T Consensus       503 ~~~~~~~~~~~~~~~~h~~~~~~~~~~~~Dp~~v~i~~~~~~~~G~~~~~g~~~~~l~~~L~~~gI~~e~~~~~~v~~~~  582 (755)
T 2vyc_A          503 LTTVQDCWVMHPGESWHGFKDIPDNWSMLDPIKVSILAPGMGEDGELEETGVPAALVTAWLGRHGIVPTRTTDFQIMFLF  582 (755)
T ss_dssp             HHHCGGGTBCCTTCTTTCCTTCCTTSEEECTTEEEEECSCBCTTSSBCSSCCCHHHHHHHHHTTTCCCSEECSSEEEEEC
T ss_pred             ccchhhhhccCcccccccccccCCCccccCCeEEEEEcCCCCCCCCccccCCcHHHHHHHHHHCCCEEeecCCCeEEEEE
Confidence                                   0     112344444421 0      0235688999999999999877889999999


Q ss_pred             CCCCCHHHHHHHHHHHHHHHh
Q 017259          326 PLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       326 ~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +...|+++++.++++|.++.+
T Consensus       583 ~~g~t~~~~~~l~~al~~~~~  603 (755)
T 2vyc_A          583 SMGVTRGKWGTLVNTLCSFKR  603 (755)
T ss_dssp             CTTCCTTTTHHHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHH
Confidence            999999999999999998876

>3jzl_A Putative cystathionine beta-lyase involved in ALU resistance; putative cystathionine beta-lyase involved in aluminum resis structural genomics; HET: LLP; 1.91A {Listeria monocytogenes str} PDB: 3fd0_A*

Probab=99.79  E-value=2.4e-18  Score=161.42  Aligned_cols=261  Identities=10%  Similarity=0.097  Sum_probs=166.2

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~   93 (374)
                      |....+++|++.+++++|.+..++   ++||++|+..++..+     .++|     |+|++.+ +.|.+..... ...+.
T Consensus        56 y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-----l~~G-----D~Vl~~~~~~y~~~~~~~-~~~g~  124 (409)
T 3jzl_A           56 YDDEGRDTLERVYATVFKTEAALVRPQIISGTHAISTVLFGI-----LRPD-----DELLYITGQPYDTLEEIV-GIRKQ  124 (409)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSEEEEETTSCSHHHHHHHHHHHH-----CCTT-----CEEEECSSSCCTTHHHHH-TSSSS
T ss_pred             CChhHHHHHHHHHHHHhCCCcEEEECCCccHHHHHHHHHHHh-----cCCC-----CEEEEeCCCCcHhHHHHH-hcccc
Confidence            445557789999999999998877   899999999999887     5677     9999998 8876654211 00000


Q ss_pred             ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh--cC
Q 017259           94 NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK--YN  162 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~~  162 (374)
                        ....+......+..++.     .|+++++++++   ++++++++++    ++|++|.+.+    +++|.++|++  ||
T Consensus       125 --~~~~l~~~G~~~~~v~~~~~g~~d~e~l~~ai~---~~tklV~i~~s~g~p~nptg~v~~----l~~I~~la~~~~~~  195 (409)
T 3jzl_A          125 --GQGSLKDFHIGYSSVPLLENGDVDFPRIAKKMT---PKTKMIGIQRSRGYADRPSFTIEK----IKEMIVFVKNINPE  195 (409)
T ss_dssp             --SSSCTGGGTCEEEECCCCTTSCCCHHHHHHHCC---TTEEEEEEECSCTTSSSCCCCHHH----HHHHHHHHHHHCTT
T ss_pred             --hhhHHHHcCCEEEEeCCCCCCCcCHHHHHHhcc---CCCeEEEEECCCCCCCCCcCcccc----HHHHHHHHHhhCCC
Confidence              00000000011222332     38999999887   5799999999    8899997776    9999999999  99


Q ss_pred             CEEEEeccccCCcccccCcccccCCCCCcEE--EecccccCCc-cchhhheeCHHHHhhcCCC--C--CCCCCCCCHHHH
Q 017259          163 ILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGGV-IPVSAVLADKEVMLCIQPG--E--HGSTFGGNPLAS  235 (374)
Q Consensus       163 i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~-~~~G~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~  235 (374)
                      +++++|++|+.+.....+.     ....|++  |++|.++|+. ..+|++++++++++.+...  .  .+...++....+
T Consensus       196 ~~livD~a~~~~~~~~~p~-----~~g~Div~~S~sK~lgg~~~~~GG~v~~~~~li~~l~~~~~~~~~g~~~g~~~~~~  270 (409)
T 3jzl_A          196 VIVFVDNCYGEFVEYQEPP-----EVGADIIAGSLIKNPGGGLAKTGGYIAGKEALVDLCGYRLTTPGIGREAGASLYSL  270 (409)
T ss_dssp             CEEEEECTTCTTTSSCCSG-----GGTCSEEEEETTSGGGTTTCSSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCH
T ss_pred             CEEEEeCCcccccccCCcc-----ccCCeEEEECccccCCccCCceEEEEEeCHHHHHHHHHHhccccccccccccHHHH
Confidence            9999999998542111221     1234555  7889999642 1467899999988877541  1  111222222112


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhC-CCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCC
Q 017259          236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQF-PNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERG  310 (374)
Q Consensus       236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~G  310 (374)
                      .++...++.+  ....++..++..++.+.|++..... |.  ...+....++.+.+.+.   ....++++.|....
T Consensus       271 ~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~v~p~--~~~~~~~~i~~i~l~~~---~~~~~~~~~L~~~~  339 (409)
T 3jzl_A          271 LEMYQGFFLA--PHVTAQAIKGARFTAAMLAEFGVEADPV--WDAPRTDLIQSVSFHNK---EKMVAFAQAIQAAS  339 (409)
T ss_dssp             HHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCEEESC--TTSCCSSSCCEEECSCH---HHHHHHHHHHHHTS
T ss_pred             HHHHHHHhhH--HHHHHHHHHHHHHHHHHHHhCCCcccCC--CCCCCccEEEEEEeCCH---HHHHHHHHHHHhcC
Confidence            3344444433  2456777778888888887763211 10  00011122667777533   26778999998874

>3hvy_A Cystathionine beta-lyase family protein, YNBB B.S ortholog; NP_348457.1, putative cystathionine beta-lyase involved in A resistance; HET: LLP MSE; 2.00A {Clostridium acetobutylicum}

Probab=99.78  E-value=7.3e-18  Score=158.65  Aligned_cols=259  Identities=12%  Similarity=0.103  Sum_probs=164.4

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~   93 (374)
                      |.....+++++++++++|.+..++   ++||++|+..++..+     .++|     |+|++.+ +.|++..... .....
T Consensus        71 Y~~~g~~~Le~~lA~l~g~e~alv~p~~~sGt~A~~~al~al-----l~pG-----D~Vl~~~~~~y~~~~~~~-g~~~~  139 (427)
T 3hvy_A           71 YNDIGRDSLDRVYANIFNTESAFVRPHFVNGTHAIGAALFGN-----LRPN-----DTMMSICGMPYDTLHDII-GMDDS  139 (427)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHT-----CCTT-----CEEEECSSSCCGGGHHHH-TCCTT
T ss_pred             CCchhHHHHHHHHHHHhCCCceEEeCCCCcHHHHHHHHHHHh-----cCCC-----CEEEEeCCCCchhHHHHh-ccccc
Confidence            444557789999999999998888   899999999998887     6778     9999998 8886653111 00000


Q ss_pred             ccccccCCCCCCCceeccC----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh--cCC
Q 017259           94 NEAIRGFGPLLPGHLKVDF----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK--YNI  163 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~--~~i  163 (374)
                      +. ...+......+..++.    .|+++++++++++ ++++++++++    +.|++|.+.+    +++|.++|++  ||+
T Consensus       140 ~~-~~~l~~~G~~~~~v~~~~~~~d~e~l~~~i~~~-~~tklV~i~~s~gyp~nptg~v~d----l~~i~~ia~~~~~g~  213 (427)
T 3hvy_A          140 KK-VGSLREYGVKYKMVDLKDGKVDINTVKEELKKD-DSIKLIHIQRSTGYGWRKSLRIAE----IAEIIKSIREVNENV  213 (427)
T ss_dssp             CC-SCCTGGGTCEEEECCCBTTBCCHHHHHHHHHHC-TTEEEEEEESSCCSSSSCCCCHHH----HHHHHHHHHHHCSSS
T ss_pred             hh-hhHHHHcCCEEEEecCCCCCcCHHHHHHHhhCC-CCCEEEEEECCCCCCCCccccHHH----HHHHHHHHHHhCCCC
Confidence            00 0000000012223333    4899999999853 4799999999    7888887766    9999999999  899


Q ss_pred             EEEEeccccCCcccccCcccccCCCCCcEE--EecccccCC-ccchhhheeCHHHHhhcCCC--CCCC--CCCCCHHHHH
Q 017259          164 LMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGGG-VIPVSAVLADKEVMLCIQPG--EHGS--TFGGNPLASA  236 (374)
Q Consensus       164 ~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G-~~~~G~~~~~~~~~~~~~~~--~~~~--~~~~~~~~~~  236 (374)
                      ++++|++|+.+.....+..     ...|++  |+||.++|+ ..++|++++++++++.++..  ..+.  ..+++...+.
T Consensus       214 ~livD~a~~~~~~~~~p~~-----~gaDiv~~S~sK~lgg~g~~~GG~i~~~~~li~~l~~~~~~~~~g~~~~~~~~~a~  288 (427)
T 3hvy_A          214 IVFVDNCYGEFVEEKEPTD-----VGADIIAGSLIKNIGGGIATTGGYIAGKEEYVTQATFRVTVPGIGGECGSTFGVMR  288 (427)
T ss_dssp             EEEEECTTCTTTSSSCGGG-----GTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCTTCHH
T ss_pred             EEEEECCccccccCCCCcc-----cCCeEEEECCcccccccccceEEEEEECHHHHHHHHHHhhcCCcccccCCCHHHHH
Confidence            9999999985432222211     223554  888999964 21567888999988887642  1111  1122111133


Q ss_pred             HHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEee-----eEEEEeccCCCchhHHHHHHHHHHC
Q 017259          237 VAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       237 aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      .+...++.+  ....++..++..++.+.|++....    +  .++...     ++.+.+.+.   ....++++.|...
T Consensus       289 ~~~~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V--~p~~~~~~~~li~~~~l~~~---~~~~~f~~~l~~~  355 (427)
T 3hvy_A          289 SLYEGLFMA--PHVTIEAVKGAVFCARIMELAGFD----V--LPKYNDKRTDIIQAIKFNDE---KKLIDFIKGIQTA  355 (427)
T ss_dssp             HHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E--ESCTTSCCSSSEEEEECSSH---HHHHHHHHHHHHT
T ss_pred             HHHHhHhHH--HHHHHHHHHHHHHHHHHHHhCCCe----e--cCCCCCCCceEEEEEeCCCH---HHHHHHHHHhccc
Confidence            344444433  245677777888888887765321    1  111122     666666533   2567788888876

>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase involved in aluminum resist structural genomics; HET: MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*

Probab=99.78  E-value=8.7e-18  Score=158.12  Aligned_cols=257  Identities=12%  Similarity=0.123  Sum_probs=165.4

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEe---cCChHHHHHHHHHHHHHcccccccCCCCccEEEEec-cCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLP---MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC-GCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~---~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~-~~yhg~~~~~~~~~~~   93 (374)
                      |..+.++++++.+++++|.+..++   ++||++|+..++..+     .++|     |+|++.+ +.|++..... .....
T Consensus        70 y~~~~~~~Le~~lA~l~g~e~alv~p~~~sGt~Ai~~al~al-----l~pG-----D~Vl~~~~~~y~~~~~~~-g~~~~  138 (427)
T 3i16_A           70 YGDIGRDSLDAVYARVFNTESALVRPHFVNGTHALGAALFGN-----LRPG-----NTMLSVCGEPYDTLHDVI-GITEN  138 (427)
T ss_dssp             TTCHHHHHHHHHHHHHHTCSEEEEETTCCSHHHHHHHHHHHH-----CCTT-----CEEEESSSSCCGGGHHHH-TCSCC
T ss_pred             CCHHHHHHHHHHHHHHhCCcceEEeCCCccHHHHHHHHHHHH-----hCCC-----CEEEEeCCCccHHHHHHH-hcccc
Confidence            445557789999999999998877   899999999999887     6677     9999998 8876553211 00000


Q ss_pred             ---ccccccCCCCCCCceeccC-----CCHHHHHHHHHhcCCcEEEEEEcc----ccCCCCcccCChhHHHHHHHHHHh-
Q 017259           94 ---NEAIRGFGPLLPGHLKVDF-----GDITALEKIFKESGDQIAGFLFEP----IQGEAGVIIPPDGYLKAVRDLCSK-  160 (374)
Q Consensus        94 ---~~~~~~~~~~~~~~~~~~~-----~d~~~le~~l~~~~~~~~~vi~~~----~~~~~g~~~~~~~~l~~l~~l~~~-  160 (374)
                         ....    .....+..++.     .|+++++++++++ ++++++++++    ++|++|.+.+    +++|.++|++ 
T Consensus       139 ~~~~~l~----~~G~~~~~v~~~~~g~~D~e~l~~~l~~~-~~tklV~i~~s~~~p~nptg~i~d----l~~i~~la~~~  209 (427)
T 3i16_A          139 SNMGSLK----EFGINYKQVDLKEDGKPNLEEIEKVLKED-ESITLVHIQRSTGYGWRRALLIED----IKSIVDCVKNI  209 (427)
T ss_dssp             CSSCCTG----GGTCEEEECCCCTTSSCCHHHHHHHHHTC-TTEEEEEEECSCCSSSSCCCCHHH----HHHHHHHHHHH
T ss_pred             chHHHHH----HcCCEEEEecCccCCCcCHHHHHHHhhCC-CCCEEEEEEcCCCCCCCCcccHHH----HHHHHHHHHHh
Confidence               0000    00011222332     3899999999753 4799999999    8888887766    9999999999 


Q ss_pred             -cCCEEEEeccccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCC--CCCCCCCCCH-H
Q 017259          161 -YNILMIADEIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNP-L  233 (374)
Q Consensus       161 -~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~-~  233 (374)
                       ||+++++|++|+.+.....+.     ....|++  |+||.++| |..++|++++++++++.++..  .........+ +
T Consensus       210 ~~g~~livD~a~~~~~~~~~p~-----~~gaDiv~~S~sK~lgg~g~~~gG~i~~~~~li~~l~~~~~~~~~g~~~~~~~  284 (427)
T 3i16_A          210 RKDIICFVDNCYGEFMDTKEPT-----DVGADLIAGSLIKNIGGGIAPTGGYLAGTKDCIEKTSYRLTVPGIGGECGSTF  284 (427)
T ss_dssp             CTTSEEEEECTTTTTSSSSCGG-----GGTCSEEEEETTSGGGTTTCCSCEEEEECHHHHHHHHHHHSCTTTGGGCCCCT
T ss_pred             CCCCEEEEECCCccccccCCcc-----ccCCeEEEecCcccCCCCCCceEEEEEECHHHHHHHHHhcccCccCccCCccH
Confidence             999999999998543222221     1233554  78899986 322568899999988887642  1111111111 2


Q ss_pred             H-HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEee-----eEEEEeccCCCchhHHHHHHHHH
Q 017259          234 A-SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL-----FNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       234 ~-~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~-----~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      . ...+...++.+  ....++..++..++.+.|++....    +  .++...     ++.+.+.+.   ....+|++.|.
T Consensus       285 ~~a~~~l~gl~~~--~~r~~~~~~~a~~la~~L~~~g~~----V--~p~~~~~~~~~i~~i~l~~~---~~~~~f~~~l~  353 (427)
T 3i16_A          285 GVVRSMYQGLFLA--PHISMEALKGAILCSRIMELAGFE----V--MPKYDEKRSDIIQSIKFNDK---DKLIEFCKGIQ  353 (427)
T ss_dssp             TCHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHTTCE----E--ESCTTSCCSSSCEEEECSSH---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCCe----e--cCCCCCCCccEEEEEEECCH---HHHHHHHHHHh
Confidence            2 23333344332  245677777888888888765321    1  111222     677777533   25678899888


Q ss_pred             HCC
Q 017259          308 ERG  310 (374)
Q Consensus       308 ~~G  310 (374)
                      ...
T Consensus       354 ~~~  356 (427)
T 3i16_A          354 TGS  356 (427)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            773

>1wyu_A Glycine dehydrogenase (decarboxylating) subunit 1; alpha(2)beta(2) tetramer, riken structural genomics/proteomi initiative, RSGI; HET: PLP; 2.10A {Thermus thermophilus} SCOP: c.67.1.7 PDB: 1wyt_A* 1wyv_A*

Probab=99.77  E-value=1.4e-17  Score=158.51  Aligned_cols=280  Identities=14%  Similarity=0.168  Sum_probs=168.7

Q ss_pred             CcHHHHHHHHhcccCCCe--EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc----ccCCc
Q 017259           21 DKFPVFAERLTSMFGYDM--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS----MSCDN   94 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~--~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~----~~~~~   94 (374)
                      +...++++++++++|.+.  +++++|++.+.++++.+++    ..+|     |+|++..++|+........    .+...
T Consensus       108 ~~~~~~~~~la~~~g~~~~~i~~~~g~taa~ea~~~a~~----~~~g-----d~Viv~~~~h~s~~~~~~~~a~~~G~~v  178 (438)
T 1wyu_A          108 QATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALR----ETGR-----MGVLVSQGVHPEYRAVLRAYLEAVGAKL  178 (438)
T ss_dssp             HHHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHH----HHTC-----CEEEEETTSCHHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHhCCCccceEEeCcHHHHHHHHHHHHh----cCCC-----CEEEEcCccCHhHHHHHHHHHHHCCCEE
Confidence            446789999999988773  4789999966666655543    3456     9999999987554433221    11111


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc-ccC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI-QSG  173 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea-~~~  173 (374)
                      ...    +. .+. .+   |+++    ++   +++++++++++ |++|.+.+    +++|.++|++||+++|+|.. ++ 
T Consensus       179 ~~v----~~-~~~-~~---d~~~----i~---~~t~~v~i~~p-n~tG~~~~----l~~i~~la~~~g~~vivd~d~~a-  236 (438)
T 1wyu_A          179 LTL----PL-EGG-RT---PLPE----VG---EEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLS-  236 (438)
T ss_dssp             EEE----CC-BTT-BC---CCCC----CC---TTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTG-
T ss_pred             EEE----cC-cCC-cc---CHHH----hC---CCeEEEEEECC-CCCeEEec----HHHHHHHHHHcCCEEEEEechhh-
Confidence            111    10 000 01   2332    33   57999999887 89999988    99999999999999996622 32 


Q ss_pred             CcccccCcccccCCCCCcEEEec-cccc-----CCccchhhheeCHHHHhhcCCCCC-----------------------
Q 017259          174 LARSGRMLASDWEEVRPDMVILG-KALG-----GGVIPVSAVLADKEVMLCIQPGEH-----------------------  224 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s-K~~~-----~G~~~~G~~~~~~~~~~~~~~~~~-----------------------  224 (374)
                      ++....  . .  ...+|++++| |.++     +|. ++|++++++++.+.+.....                       
T Consensus       237 ~g~~~~--~-~--~~g~D~~~~s~kk~~~~~~~~Gp-~~G~l~~~~~~~~~l~~~~~g~~~~~~~~~~~~~~l~~~~~~~  310 (438)
T 1wyu_A          237 LGVLKP--P-G--AYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYI  310 (438)
T ss_dssp             GGTBCC--H-H--HHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHH
T ss_pred             ccCcCC--C-c--cCCCCEEEECCcccCCCccCCCC-CeeEEEEcHHHHHhCCCceeccccccCCCcceeeecccccccc
Confidence            211111  1 1  1245777664 6543     466 78999999888776532110                       


Q ss_pred             ---CCCCCC---CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC
Q 017259          225 ---GSTFGG---NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       225 ---~~~~~~---~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~  295 (374)
                         ..+...   +.+...++...+..+..+   ++.++.+++.+++.+.|+++    |++..... ...+..+.+.... 
T Consensus       311 r~~~~t~~~~~~~~~~a~~aa~~l~~~~~~g~~~~~~~~~~~~~~l~~~L~~~----~g~~~~~~-~~~~~~~~~~~~~-  384 (438)
T 1wyu_A          311 RRAKAKSNITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEV----PGVRPFTP-KPFFNEFALALPK-  384 (438)
T ss_dssp             HGGGSSCCCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS----TTCEECSC-SSBCSEEEEECSS-
T ss_pred             chhcccCCccchHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhcC----CCeEECCC-CCeEEEEEEeCCC-
Confidence               111211   222222222224444332   34555666666666666543    22211111 1223323332222 


Q ss_pred             chhHHHHHHHHHHCCeEe--ccCC---CCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          296 PVSAYDICLKMKERGILA--KPTH---DTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v--~~~~---~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                        +..++.+.|.++||.+  +++.   .+++||+++..++++|+++++++|++++
T Consensus       385 --~~~~~~~~L~~~gi~v~~~~~~~~~~~~lRis~~~~~t~edi~~~~~~l~~~l  437 (438)
T 1wyu_A          385 --DPEAVRRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (438)
T ss_dssp             --CHHHHHHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             --CHHHHHHHHHHCCceeccccccccCCCeEEEEecccCCHHHHHHHHHHHHHHh
Confidence              5789999999999998  4442   6899999988899999999999998764

>3e77_A Phosphoserine aminotransferase; SERC, PLP, structural genomi structural genomics consortium, SGC, amino-acid biosynthesi aminotransferase; HET: PLP; 2.50A {Homo sapiens}

Probab=99.74  E-value=2.4e-17  Score=152.35  Aligned_cols=287  Identities=9%  Similarity=0.003  Sum_probs=180.7

Q ss_pred             CcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      ..+++.++.|+++++.+   +++| ++|||++++.++..+..   .++|     |++++...++++...  ......-+.
T Consensus        58 ~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~a~~~l~~---~~~G-----d~v~~~~~g~~~~~~--~~~a~~~G~  127 (377)
T 3e77_A           58 KIINNTENLVRELLAVPDNYKVIFLQGGGCGQFSAVPLNLIG---LKAG-----RCADYVVTGAWSAKA--AEEAKKFGT  127 (377)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHHGG---GSTT-----CEEEECCCSHHHHHH--HHHHTTTSE
T ss_pred             HHHHHHHHHHHHHhCCCCCCeEEEEcCchHHHHHHHHHhccC---CCCC-----CeEEEEECCHHHHHH--HHHHHHhCC
Confidence            34667888888888653   5888 58999999999998842   1236     888776665555321  111111111


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                      ...+.+...+..    .++++++..++   ++++++.+.+..+.+|.+.|    +     +|+++|+++++|.+++ ++ 
T Consensus       128 ~~~~~~~~~~~~----~~~~~~~~~i~---~~t~lV~~~h~et~tG~~~p----i-----i~~~~~~~~~vD~~q~-~g-  189 (377)
T 3e77_A          128 INIVHPKLGSYT----KIPDPSTWNLN---PDASYVYYCANETVHGVEFD----F-----IPDVKGAVLVCDMSSN-FL-  189 (377)
T ss_dssp             EEECSCCCSSSC----SCCCGGGCCCC---TTCSCEEEESEETTTTEECS----S-----CCCCTTCCEEEECTTT-TT-
T ss_pred             ceEEeccCCCcC----CCCChHHhccC---CCccEEEEeCccCchheEch----h-----hhccCCCEEEEEcccc-cC-
Confidence            111111100000    13344443343   57888888888888899998    5     5789999999999998 31 


Q ss_pred             cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC------------CCCCCCCCHHHHHHHHHHH
Q 017259          177 SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE------------HGSTFGGNPLASAVAIASL  242 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~aa~~al  242 (374)
                       ..++..+.++    ++++|  |++| +. ++|+++.++++.+.+.+..            ....++++..+..+..+++
T Consensus       190 -~~~id~~~~~----~~~~s~~K~~g-p~-G~g~l~~~~~~l~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~~i~~l~~al  262 (377)
T 3e77_A          190 -SKPVDVSKFG----VIFAGAQKNVG-SA-GVTVVIVRDDLLGFALRECPSVLEYKVQAGNSSLYNTPPCFSIYVMGLVL  262 (377)
T ss_dssp             -SSCCCGGGCS----EEEEEGGGTTS-CT-TCEEEEEETTSCSCCCTTSCGGGCHHHHHTTTTCSSCCCHHHHHHHHHHH
T ss_pred             -CCCCchhhcC----EEEEecccccC-CC-ccEEEEEcHHHHhhccCCCCchhhHHHHhhcCCCCCCchHHHHHHHHHHH
Confidence             1233333333    34444  9994 54 6688888877765544210            1122356777888888888


Q ss_pred             HHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCce-e--eE-EEEeeeEEEEeccCCCchh-HHHHHHHHHHCCeEe
Q 017259          243 DVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYV-K--EV-RGRGLFNAVEFDKTALPVS-AYDICLKMKERGILA  313 (374)
Q Consensus       243 ~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~--~~-~~~g~~~~~~~~~~~~~~~-~~~~~~~l~~~Gi~v  313 (374)
                      +++.+.    .+.++.+++.+++++.|+++    |++. .  .. ...+..+.|.++......+ ...+.+.|.++||.+
T Consensus       263 ~~l~~~GG~~~i~~~~~~l~~~l~~~L~~~----~g~~~~~~~~~~rs~~ivsf~~~~~~~~~~~~~~~l~~l~~~Gi~~  338 (377)
T 3e77_A          263 EWIKNNGGAAAMEKLSSIKSQTIYEIIDNS----QGFYVCPVEPQNRSKMNIPFRIGNAKGDDALEKRFLDKALELNMLS  338 (377)
T ss_dssp             HHHHHTTHHHHHHHHHHHHHHHHHHHHHTS----TTSEECCSCGGGBCSSEEEEEESSTTCCHHHHHHHHHHHHHTTEES
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHHHHhc----CCceecCCCHHHcCCcEEEEEcCCCCCchhHHHHHHHHHHHCCcEE
Confidence            887654    45566666777777777654    2221 1  11 1234457777765210001 246888888999999


Q ss_pred             ccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 KPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 ~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +++.  .+.+|+++...+|++|++++++.|+++.+
T Consensus       339 ~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~  373 (377)
T 3e77_A          339 LKGHRSVGGIRASLYNAVTIEDVQKLAAFMKKFLE  373 (377)
T ss_dssp             CBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             eCCCCcCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            8764  36799999999999999999999999887

>3n75_A LDC, lysine decarboxylase, inducible; pyridoxal-5'-phosphate dependent decarboxylase, acid stress stringent response; HET: LLP G4P P6G; 2.00A {Escherichia coli} PDB: 3q16_A*

Probab=99.74  E-value=2.5e-16  Score=155.86  Aligned_cols=307  Identities=10%  Similarity=0.028  Sum_probs=197.2

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCCh-HHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTG-AEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~g-s~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+.....++++.+++++|.++.++++|| +.|+..++.++     .++|     |+|++.+++|.+...+....+..+.+
T Consensus       192 ~~~g~i~eaE~~lA~~fGa~~a~~v~nGts~An~~ai~al-----~~pG-----D~VLv~r~~H~S~~~~l~lsGa~pv~  261 (715)
T 3n75_A          192 DHSGPHKEAEQYIARVFNADRSYMVTNGTSTANKIVGMYS-----APAG-----STILIDRNCHKSLTHLMMMSDVTPIY  261 (715)
T ss_dssp             TTBTHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCHHHHHHHHHSCCEEEE
T ss_pred             CCcHHHHHHHHHHHHHhCCCCceEECcHHHHHHHHHHHHh-----CCCC-----CEEEECCCccHHHHHHHHHcCCEEEE
Confidence            4455688899999999999988777777 58888888887     6788     99999999975555443333333333


Q ss_pred             cccCCCCCCCceeccCC------CHHHHHHHHHhcCCc--EEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           97 IRGFGPLLPGHLKVDFG------DITALEKIFKESGDQ--IAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~------d~~~le~~l~~~~~~--~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      ....   ... ..++.+      |+++++++++++++.  +++++++++ +++|.+.+    +++|.++|++++  +++|
T Consensus       262 v~~~---~~~-~gi~~~i~~~~~d~e~Le~~l~~~~~~k~p~~vivt~p-n~~G~v~d----l~~I~ela~~~~--livD  330 (715)
T 3n75_A          262 FRPT---RNA-YGILGGIPQSEFQHATIAKRVKETPNATWPVHAVITNS-TYDGLLYN----TDFIKKTLDVKS--IHFD  330 (715)
T ss_dssp             ECCC---BCT-TCCBCCCCGGGGSHHHHHHHHHHSTTCCSCSEEEEESS-CTTSEEEC----HHHHHHHCCCSE--EEEE
T ss_pred             Eecc---ccc-cccccCcccccCCHHHHHHHHhhCcCccCceEEEEECC-CCCCccCC----HHHHHHHhCcCc--EEEc
Confidence            2210   000 011111      799999999876321  225555555 78899998    999999998774  7999


Q ss_pred             ccccCCcccccCcc-ccc--CCCCCcE-----EEecccccCCccchhhheeCHHHH-hhcCCC-CCCCCCCCCHHHHHHH
Q 017259          169 EIQSGLARSGRMLA-SDW--EEVRPDM-----VILGKALGGGVIPVSAVLADKEVM-LCIQPG-EHGSTFGGNPLASAVA  238 (374)
Q Consensus       169 ea~~~~~~~g~~~~-~~~--~~~~~d~-----~s~sK~~~~G~~~~G~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~aa  238 (374)
                      |+|++....+..+. ...  .+..+|+     .|++|+++|-- ..|++..++++. ..+... ....+.+++.+.+++.
T Consensus       331 EAH~~~~~f~~~~~~~~al~~g~~aD~vii~~~S~hKtL~glt-qgs~i~v~~~i~~~~~~~~~~~~~STSpsy~~~Asl  409 (715)
T 3n75_A          331 SAWVPYTNFSPIYEGKCGMSGGRVEGKVIYETQSTHKLLAAFS-QASMIHVKGDVNEETFNEAYMMHTTTSPHYGIVAST  409 (715)
T ss_dssp             CTTCTTGGGSGGGTTSSTTSSSCCTTCEEEEEECHHHHSSCCT-TCEEEEEESCCCHHHHHHHHHHTSCSSCCHHHHHHH
T ss_pred             cccccccccCCccccccccccCcCCCEEEEEEecccccccCCC-CeeEEEeCchhhHHHHHHHHHhhcCCCchHHHHHHH
Confidence            99984321122111 111  1212453     36779987532 345566554311 111111 1234557788888888


Q ss_pred             HHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCC-cee-------------e-----------------EEEEee
Q 017259          239 IASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPN-YVK-------------E-----------------VRGRGL  284 (374)
Q Consensus       239 ~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~-------------~-----------------~~~~g~  284 (374)
                      .++++.+..   .++.++..++.+++++.|+++....++ ++.             .                 ..-...
T Consensus       410 daA~~~~~~~~g~~~~~~l~~~a~~~r~~L~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~gf~~~~~~~~~~Dp~  489 (715)
T 3n75_A          410 ETAAAMMKGNAGKRLINGSIERAIKFRKEIKRLRTESDGWFFDVWQPDHIDTTECWPLRSDSTWHGFKNIDNEHMYLDPI  489 (715)
T ss_dssp             HHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCCCEESSCSCCCSCSCEECCTTCCTTCCTTCCSSSEEECTT
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhhhhcccceeeccCcccccchhhhccCcccccccccccccCcccCCCe
Confidence            889888753   367899999999999999888642110 000             0                 000112


Q ss_pred             eEEEEeccCC-------CchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          285 FNAVEFDKTA-------LPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       285 ~~~~~~~~~~-------~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      -+.+..+...       .|.++.++.++|.++||.+.-.+...+-+.++...++++++.++++|.++-+
T Consensus       490 Kl~i~~~~~~~~G~~~~~Gi~g~~~~~~L~~~~I~~E~~d~~~vl~l~s~g~~~~~~~~L~~aL~~~~~  558 (715)
T 3n75_A          490 KVTLLTPGMEKDGTMSDFGIPASIVAKYLDEHGIVVEKTGPYNLLFLFSIGIDKTKALSLLRALTDFKR  558 (715)
T ss_dssp             EEEEECSCBCTTSCBCSSCCCHHHHHHHHHHTTCCCSEEETTEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEEEEcCCCCCCCccccCCCcHHHHHHHHHHCCCEEEecCCCcEEEEeCCCCCHHHHHHHHHHHHHHHH
Confidence            2233332210       0346778999999999999988888888888888899999999999987654

>3qm2_A Phosphoserine aminotransferase; structural genomics, center for structural genomics of infec diseases, csgid; 2.25A {Salmonella enterica subsp} PDB: 1bjn_A* 1bjo_A* 3qbo_A*

Probab=99.73  E-value=6.7e-18  Score=156.94  Aligned_cols=286  Identities=9%  Similarity=0.002  Sum_probs=176.9

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ...+++.++.++++++.+   +++| |+|||++++.++..+     .++|     |++++...+.++.... ..+.....
T Consensus        71 ~~~~~~ar~~la~ll~~~~~~evif~t~~~T~a~n~ai~~l-----~~~g-----d~v~~~~~~~~~~~~~-~~a~~~G~  139 (386)
T 3qm2_A           71 IQVAEEAEQDFRDLLNIPSNYKVLFCHGGGRGQFAGVPLNL-----LGDK-----TTADYVDAGYWAASAI-KEAKKYCA  139 (386)
T ss_dssp             --CCHHHHHHHHHHHTCCTTEEEEEEESCTTHHHHHHHHHH-----CTTC-----CEEEEEESSHHHHHHH-HHHTTTSE
T ss_pred             HHHHHHHHHHHHHHhCCCCCceEEEEcCCchHHHHHHHHhc-----cCCC-----CeEEEEeCCHHHHHHH-HHHHHhCC
Confidence            566788999999988653   5888 699999999999887     4556     7776655554443211 11111010


Q ss_pred             ccccCCCCC--CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcc-cCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           96 AIRGFGPLL--PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVI-IPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        96 ~~~~~~~~~--~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~-~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .  .+.+..  .....   .++++++++++   +++++|++.+..+.+|.+ .|    +++|.     +|+++++|.+++
T Consensus       140 v--~~v~~~~~~~G~~---~~~~~~~~~l~---~~t~lV~~~h~et~tG~~i~p----i~~i~-----~g~~~~vDa~qs  202 (386)
T 3qm2_A          140 P--QIIDAKITVDGKR---AVKPMREWQLS---DNAAYLHYCPNETIDGIAIDE----TPDFG-----PEVVVTADFSST  202 (386)
T ss_dssp             E--EEEECEEEETTEE---EECCGGGCCCC---TTCSCEEECSEETTTTEECCC----CCCCC-----TTCCEEEECTTT
T ss_pred             e--EEEecCcccCCCC---CCchHHHhhcC---CCCcEEEEECCcCCcCEecCc----hhhhc-----CCCEEEEEcccc
Confidence            0  000000  00000   03445555554   578888888888888996 76    76664     899999999998


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----------CCC-CCCCCHHHHHHH
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----------HGS-TFGGNPLASAVA  238 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----------~~~-~~~~~~~~~~aa  238 (374)
                       ++  ..++..+.++    ++++|  |++| .. ++|+++.++++.+.+.+..           ... ..+++..+..+.
T Consensus       203 -~g--~~pidv~~~~----~~~~s~hK~lG-P~-G~g~l~v~~~~~~~~~~~~p~~~~~~~~~~~~~~~gTp~v~~i~~l  273 (386)
T 3qm2_A          203 -IL--SAPLDVSRYG----VIYAGAQKNIG-PA-GLTLVIVREDLLGKAHESCPSILDYTVLNDNDSMFNTPPTFAWYLS  273 (386)
T ss_dssp             -TT--SSCCCGGGCS----EEEEETTTTTC-CT-TEEEEEEEGGGCSCCCTTSCGGGCHHHHHHC-------CCSHHHHH
T ss_pred             -cC--CCCCCccccC----EEEEecccccC-CC-ccEEEEECHHHHhhhcccCCcHHHHHHHhhcCCCCCCCcHHHHHHH
Confidence             32  1223333332    44444  9995 55 6788888888765554311           011 124466677777


Q ss_pred             HHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          239 IASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       239 ~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      .++++++.+.    ++.++.+++.+++++.|+++. .+..........+..+.|.+++..  .+ .++.+.|.++||.++
T Consensus       274 ~~Al~~~~~~gG~~~i~~~~~~l~~~l~~~l~~~~-~~~~~~~~~~rs~~iv~f~~~~~~--~~-~~~~~~L~~~gI~~~  349 (386)
T 3qm2_A          274 GLVFKWLKAQGGVAAMHKINQQKAELLYGVIDNSD-FYRNDVAQANRSRMNVPFQLADNT--LD-KVFLEESFAAGLHAL  349 (386)
T ss_dssp             HHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHTCS-SEECCBCGGGBCSSEEEEEESSGG--GH-HHHHHHHHHTTEECC
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHCC-CcccCCCHHHcCceEEEEECCCcc--cc-HHHHHHHHHCCCEEe
Confidence            7788876543    455666667777777776541 100001111123456777776421  13 678888999999998


Q ss_pred             cCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          315 PTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       315 ~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .+.  .+.+|+++...+|++|++++++.|+++.+
T Consensus       350 ~g~~~~~~iRiS~~~~~t~edId~l~~~l~~~~~  383 (386)
T 3qm2_A          350 KGHRVVGGMRASIYNAMPIEGVKALTDFMIDFER  383 (386)
T ss_dssp             BCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcCeEEEEcCCCCCHHHHHHHHHHHHHHHH
Confidence            763  35699999999999999999999999876

>3hl2_A O-phosphoseryl-tRNA(SEC) selenium transferase; selenocysteine, sepsecs, protein-RNA complex, alternative splicing, cytoplasm, protein biosynthesis, pyridoxal phosphate, selenium; HET: PLR SEP; 2.81A {Homo sapiens}

Probab=99.67  E-value=4.9e-15  Score=136.94  Aligned_cols=293  Identities=14%  Similarity=0.100  Sum_probs=177.6

Q ss_pred             eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-CccccccCCCCCCCceeccCCCHH
Q 017259           38 MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-DNEAIRGFGPLLPGHLKVDFGDIT  116 (374)
Q Consensus        38 ~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~d~~  116 (374)
                      ..++++++|.++.+++.+...     ++ .++.+.||+++.+ |-....+..+.+ .+.+......  .+  ... -|++
T Consensus       136 ~~flVnGsTgg~lamilaa~r-----~~-rpg~d~VIvpRn~-HKSv~kAliL~Gl~Pv~V~p~~d--~~--~~~-id~e  203 (501)
T 3hl2_A          136 NCFVVPMATGMSLTLCFLTLR-----HK-RPKAKYIIWPRID-QKSCFKSMITAGFEPVVIENVLE--GD--ELR-TDLK  203 (501)
T ss_dssp             EEEEESSCHHHHHHHHHHHHH-----HH-CTTCCEEEEECCC-CHHHHHHHHHTTCEEEEECEEEE--TT--EEE-ECHH
T ss_pred             cEEEECcHHHHHHHHHHHHcC-----cc-cCCCCEEEEecch-HHHHHHHHHHcCCeEEEEeeeec--cc--ccC-CCHH
Confidence            467777777677777666642     21 1122889998888 666666655554 3333321100  00  011 1899


Q ss_pred             HHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCC-CCcEEE
Q 017259          117 ALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV-RPDMVI  194 (374)
Q Consensus       117 ~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s  194 (374)
                      +++++|++++ +.+.++++++..+.++...+    +++|+++|++||+++++||||+........+....+.. ..|+++
T Consensus       204 ~le~aI~e~ga~~i~~V~~Ttt~y~p~~~dd----I~eIaeIch~~gIpllVDeAhGah~~~~~~lp~sA~~~GrAD~vV  279 (501)
T 3hl2_A          204 AVEAKVQELGPDCILCIHSTTSCFAPRVPDR----LEELAVICANYDIPHIVNNAYGVQSSKCMHLIQQGARVGRIDAFV  279 (501)
T ss_dssp             HHHHHHHHHCGGGEEEEEEECSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTCTTCHHHHHHHHHHHHHSCCCEEE
T ss_pred             HHHHHHHhcCCCcEEEEEecCCCCCCccccc----HHHHHHHHHHcCCeEEEeCcchhhhhhhhhhHHHHHhcCCCcEEE
Confidence            9999999875 55666666555443444456    99999999999999999999985421111111122222 378887


Q ss_pred             ec--ccccCCccchhh-he-e-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHH
Q 017259          195 LG--KALGGGVIPVSA-VL-A-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLF  266 (374)
Q Consensus       195 ~s--K~~~~G~~~~G~-~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~  266 (374)
                      .|  |.+-   +++|. ++ . ++++++.+.....+. -  +....+..+.++..+..+   ++.++..++.+++++.|+
T Consensus       280 qS~HK~ll---vpIGG~ii~~~d~e~l~~~~~~yPGr-~--S~Spsldl~~tLL~lGr~Gy~~ll~e~~ela~~L~~~L~  353 (501)
T 3hl2_A          280 QSLDKNFM---VPVGGAIIAGFNDSFIQEISKMYPGR-A--SASPSLDVLITLLSLGSNGYKKLLKERKEMFSYLSNQIK  353 (501)
T ss_dssp             EEHHHHHC---CCSSCEEEEESCHHHHHHHHHTSCSC-B--CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ecccccce---eecCceEEEeCCHHHHHHHHHhCCCC-C--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            77  6543   24433 33 3 556666664322111 1  222233233333333333   667888889999999999


Q ss_pred             HHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCCe---Ee-ccC--------------------CCCE
Q 017259          267 KIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERGI---LA-KPT--------------------HDTI  320 (374)
Q Consensus       267 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~Gi---~v-~~~--------------------~~~~  320 (374)
                      ++...+...+..++.+..-+.+.+.....  .....++-..|..++|   -+ .++                    ...+
T Consensus       354 ~la~~~ge~ll~~~~n~is~a~tl~~~~~~~~~~~t~~gs~Lf~r~vsG~Rvv~~~~~~~i~g~~f~~~g~h~~~~~~~y  433 (501)
T 3hl2_A          354 KLSEAYNERLLHTPHNPISLAMTLKTLDEHRDKAVTQLGSMLFTRQVSGARVVPLGSMQTVSGYTFRGFMSHTNNYPCAY  433 (501)
T ss_dssp             HHHHTTTCCBCCCTTCSSEEEEECTTSCTTTSCHHHHHHHHHHHTTCCSCEEECTTCCEEETTEEESSTTTTSSCCSSCE
T ss_pred             HHHHhcChhhcCCCCCceeEEEecccccccccccHHHHHHHHHhcCCCcceeecCCCceEECCeeecCcccCCCCCCchH
Confidence            98876543455555555666666643311  1246678888888854   22 221                    1367


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      +-++.....+.+|++.++++|++++. ++.+..
T Consensus       434 l~~a~aiG~~~~~v~~~~~~l~~~~~-~~~~~~  465 (501)
T 3hl2_A          434 LNAASAIGMKMQDVDLFIKRLDRCLK-AVRKER  465 (501)
T ss_dssp             EEEECCTTCCHHHHHHHHHHHHHHHH-HHHC--
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHHHHH-HHHHhh
Confidence            88888888999999999999999998 664433

>3m5u_A Phosphoserine aminotransferase; alpha-beta half sandwich, csgid, amino-acid biosynthesis, cytoplasm, pyridoxal phosphate; HET: MES; 2.15A {Campylobacter jejuni} SCOP: c.67.1.0

Probab=99.66  E-value=1.4e-15  Score=140.07  Aligned_cols=275  Identities=10%  Similarity=0.010  Sum_probs=172.7

Q ss_pred             CcHHHHHHHHhcccCCC---eEEe-cCChHHHHHHHHHHHHHcccccccCCCCccEEE-EeccCCCCcccccccccCCcc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLP-MNTGAEGVETALKLARKWGYVKKKFSIDEAIIV-SCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~-~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi-~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      ..+++.++.++++++.+   +++| |+|||++++.++..+     . +|     +++. +..+. ++......... . +
T Consensus        50 ~~~~~~r~~la~ll~~~~~~~v~f~t~~~T~a~n~~~~~~-----~-~~-----~~~~~i~~~~-~~~~~~~~a~~-~-G  115 (361)
T 3m5u_A           50 EVHFGAQEKAKKLYELNDDYEVLFLQGGASLQFAMIPMNL-----A-LN-----GVCEYANTGV-WTKKAIKEAQI-L-G  115 (361)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH-----C-CS-----SCEEEEECSH-HHHHHHHHHHH-T-T
T ss_pred             HHHHHHHHHHHHHhCCCCCceEEEEcCcHHHHHHHHHHhc-----C-CC-----CeEEEEeCCH-HHHHHHHHHHH-c-C
Confidence            45667888889888762   6888 999999999999877     3 45     5443 33333 33321111100 0 0


Q ss_pred             ccccCCCCCCCceeccCC-------CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           96 AIRGFGPLLPGHLKVDFG-------DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~-------d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                               ..+..++.+       +++. +  |+   ++++++.+.+..+.+|.+.+.         +++ +|+++++|
T Consensus       116 ---------~~v~~~~~~~~g~~~~~~~~-~--l~---~~t~lv~~~~~e~~tG~~~~~---------i~~-~~~~~~vD  170 (361)
T 3m5u_A          116 ---------VNVKTVASSEESNFDHIPRV-E--FS---DNADYAYICSNNTIYGTQYQN---------YPK-TKTPLIVD  170 (361)
T ss_dssp             ---------CCEEEEEECTTTTSCSCCCC-C--CC---TTSSEEEEESEETTTTEECSS---------CCC-CSSCEEEE
T ss_pred             ---------CceEEEecccCcCCCcCChh-h--cC---CCCCEEEEeCCCCCcceeCCc---------ccc-cCCEEEEE
Confidence                     111111110       2223 2  44   578888888777788988651         334 49999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCC----CC---------CCCCCCCCHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQP----GE---------HGSTFGGNPL  233 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~----~~---------~~~~~~~~~~  233 (374)
                      .+++ ++.  .++..+    ..|++++|  |++| .. ++|+++.++++.+.+.+    ..         ....++++..
T Consensus       171 ~~q~-~g~--~~id~~----~~d~~~~s~~K~~g-p~-G~g~l~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~Tp~v~  241 (361)
T 3m5u_A          171 ASSD-FFS--RKVDFS----NIALFYGGVQKNAG-IS-GLSCIFIRKDMLERSKNKQIPSMLNYLTHAENQSLFNTPPTF  241 (361)
T ss_dssp             CGGG-TTS--SCCCCT----TEEEEEEETTTTSS-CT-TCEEEEEEHHHHHHHHTCCCCGGGCHHHHHHTTTCSSCCCHH
T ss_pred             cccc-cCC--CCCCcc----cCCEEEEechhccC-CC-ccEEEEEcHHHHhhhcCCCCCceeehHHHhhcCCCCCCccHH
Confidence            9998 321  122222    24677776  9995 54 67888888887766543    10         1112356778


Q ss_pred             HHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHHHHH
Q 017259          234 ASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLKMKE  308 (374)
Q Consensus       234 ~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~l~~  308 (374)
                      +..+..++++++.+.    ++.++.+++.+++++.|+++...+..........+..+.|.+++ ..   ...++...|.+
T Consensus       242 ~i~~l~~al~~l~~~gG~~~i~~~~~~l~~~l~~~L~~~~g~~~~~~~~~~rs~~ivsf~~~~~~~---~~~~~~~~L~~  318 (361)
T 3m5u_A          242 AIYMFNLEMDWLLNQGGLDKVHEKNSQKATMLYECIDLSNGFYKGHADKKDRSLMNVSFNIAKNKD---LEPLFVKEAEE  318 (361)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHHTSTTSEEESSCGGGBCSSEEEEEESSCTT---HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHCCCeeeccCCHHHcCCeEEEEECCCchh---hhHHHHHHHHH
Confidence            888888889887654    45566666777777777654311000001111234567777775 21   22578889999


Q ss_pred             CCeEeccCC--CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          309 RGILAKPTH--DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~Gi~v~~~~--~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +||.++.++  .+.+|+++...+|++|++++++.|+++.+
T Consensus       319 ~gI~~~~g~~~~g~iRiS~~~~~t~edId~l~~al~~~~~  358 (361)
T 3m5u_A          319 AGMIGLKGHRILGGIRASIYNALNLDQVKTLCEFMKEFQG  358 (361)
T ss_dssp             TTEECCBCCTTTCSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CCCEEecCCCccCeEEEEccCCCCHHHHHHHHHHHHHHHH
Confidence            999998764  26799999999999999999999999887

>3bc8_A O-phosphoseryl-tRNA(SEC) selenium transferase; disorder-order transition, phosphate-loop, pyridoxal phospha selenocysteine synthase (SECS, sepsecs); HET: LLP; 1.65A {Mus musculus} SCOP: c.67.1.9 PDB: 3bca_A* 3bcb_A*

Probab=99.63  E-value=9.5e-15  Score=136.67  Aligned_cols=303  Identities=13%  Similarity=0.068  Sum_probs=171.8

Q ss_pred             HHHHHHhcccCCCe---EEecCChHHHHHH-HHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC-cccccc
Q 017259           25 VFAERLTSMFGYDM---VLPMNTGAEGVET-ALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIRG   99 (374)
Q Consensus        25 ~l~~~l~~~~~~~~---~~~~~~gs~a~~~-al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~~   99 (374)
                      .+..++.+..|...   .++++|+|.+.++ ++.+++..  ..+|     +.|++...+ |.....+..+.+- +.+.. 
T Consensus       102 ~~~~~~~~~lGlp~~~~~~lV~GaT~~~~a~~L~aar~~--~~~~-----~~viv~r~a-HkSv~kAl~l~Gl~p~~v~-  172 (450)
T 3bc8_A          102 SLVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK--RPKA-----KYIIWPRID-QKSCFKSMVTAGFEPVVIE-  172 (450)
T ss_dssp             HHHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH--CTTC-----CEEEEECCC-CHHHHHHHHHTTCEEEEEC-
T ss_pred             HHHHHHHHhCCCCCCceEEEECCHHHHHHHHHHHHcchh--hcCC-----CEEEEECCc-HHHHHHHHHHcCCeeEEEE-
Confidence            45566666556653   4888888745444 44444432  1124     788888775 7777777666553 22221 


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                        +...+- ... -|+++|+++|++++ +.+.+|++++.++.+|.+.+    +++|+++|++||+++++|+||+......
T Consensus       173 --~~~~~~-~~~-id~~~le~aI~~~~~~~~~~Vv~t~t~~g~g~~dd----l~~Ia~ia~~~gi~l~VD~A~G~~~~~~  244 (450)
T 3bc8_A          173 --NVLEGD-ELR-TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKC  244 (450)
T ss_dssp             --CEEETT-EEE-CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHH
T ss_pred             --eeecCc-cCC-cCHHHHHHHHHhcCCCCEEEEEEECCcCCCceecC----HHHHHHHHHHCCCeEEEECCCchhhhhh
Confidence              100000 111 18999999999875 46777777776665666777    9999999999999999999998542211


Q ss_pred             cCcccccCC-CCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh---cHH
Q 017259          179 RMLASDWEE-VRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE---KLA  251 (374)
Q Consensus       179 ~~~~~~~~~-~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~---~~~  251 (374)
                      ..+...... -..|.+++|  |.+.... ..+.+.. +++..+.+.....+.  ....+++......+ .+..+   ++.
T Consensus       245 ~~l~~~a~~~~~AD~~v~S~HK~l~a~~-~~~~l~~rd~~~~~~~~~~~~g~--~s~SpsL~l~~~l~-~~G~~g~~~~i  320 (450)
T 3bc8_A          245 MHLIQQGARVGRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGR--ASASPSLDVLITLL-SLGCSGYRKLL  320 (450)
T ss_dssp             HHHHHHHHHHSCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSC--BCSHHHHHHHHHHH-HHHHHHHHHHH
T ss_pred             HhHHHHHhcccCCCEEEECCccCCCchh-ccEEEEecCHHHHHHHHHHhhcC--CcccHHHHHHHHHH-HHHHHHHHHHH
Confidence            111111111 146888777  7766444 4445554 445555554321111  11223333333223 23333   334


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHCC---eEec------------
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKERG---ILAK------------  314 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~G---i~v~------------  314 (374)
                      ++..++.+++++.++++...+.-.+...+..+.-..+.++....  ..+..++.-.+...|   .-+.            
T Consensus       321 ~~~~~~a~~l~~~l~~~~~~~g~~~l~~~~~~~~~~~~l~~~~~~~~~D~tkl~i~~~~~g~sG~~v~~~~~~~~~~~~~  400 (450)
T 3bc8_A          321 KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHT  400 (450)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHhhHHhcCceecCCccCCCcceeecccccccccCCCceeEEEecCCCCccceeeecccccchhHHH
Confidence            44567788888888887743311121111111112222321000  115566666666654   2222            


Q ss_pred             ---------cCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          315 ---------PTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       315 ---------~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                               ..+..++-+..+...+++++++++++|+++++ +.
T Consensus       401 l~~~gi~~E~~~~~~i~~~~sig~~~~di~~l~~~L~~~~~-~~  443 (450)
T 3bc8_A          401 FRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IV  443 (450)
T ss_dssp             EETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHcCCeeecCCCCcEEEEecCCCCHHHHHHHHHHHHHHHH-HH
Confidence                     23457788888888999999999999999876 44

>3ou5_A Serine hydroxymethyltransferase, mitochondrial; structural genomics, STRU genomics consortium, SGC; 2.04A {Homo sapiens}

Probab=99.42  E-value=8.5e-12  Score=114.97  Aligned_cols=289  Identities=13%  Similarity=0.071  Sum_probs=166.1

Q ss_pred             HHHHHH-HhcccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc-------ccc
Q 017259           24 PVFAER-LTSMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA-------ISM   90 (374)
Q Consensus        24 ~~l~~~-l~~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~-------~~~   90 (374)
                      +.|+.. .++.++.+.     -+-..||+.|+.++..++     +++|     |+|+..+...-|+..-.       ...
T Consensus       102 E~la~~rak~lF~a~~A~w~VNVQP~SGs~AN~avy~Al-----l~PG-----D~ilg~~l~~GGHltHg~~~~~~~v~~  171 (490)
T 3ou5_A          102 ELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-----LQPH-----DRIMGLDLPDGGHLTHGYMSDVKRISA  171 (490)
T ss_dssp             HHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----CC-C-----CCEECBC--------------------
T ss_pred             HHHHHHHHHHHhCCCccccCCCCCcCCHHHHHHHHHHHH-----cCCC-----CEEEecccCCCCcccccccCCCccccc
Confidence            334433 334567764     377889999999999999     6788     99999887754442211       111


Q ss_pred             cCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ++.   .  |.....++..-.. -|.+.+++...++  ++++|++-..  ......+    +++++++|++.|.+|++|-
T Consensus       172 sg~---~--~~~~~Y~vd~~t~~IDyd~~~~~A~~~--kPklIi~G~S--aY~r~id----~~~~reIAd~vGA~Lm~Dm  238 (490)
T 3ou5_A          172 TSI---F--FESMPYKLNPKTGLIDYNQLALTARLF--RPRLIIAGTS--AYARLID----YARMREVCDEVKAHLLADM  238 (490)
T ss_dssp             -------------CBCEETTTTEECHHHHHHHHHHH--CCSEEEECCS--SCCSCCC----HHHHHHHHHHHTCEEEEEC
T ss_pred             ccc---c--ccccccccCCCCCcccHHHHHHHHhhc--CCCeEEECCc--cCccccC----HHHHHHHHhhcccEEEech
Confidence            111   0  1111111111000 1789999888876  5566666432  2233455    9999999999999999999


Q ss_pred             ccc-CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH---------------HHhhcCCC-CCCCCCCC
Q 017259          170 IQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPG-EHGSTFGG  230 (374)
Q Consensus       170 a~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~---------------~~~~~~~~-~~~~~~~~  230 (374)
                      +|. |+.-.|.. . +.+. ..|+++.+  |+|.|.  |.|.++++++               +.+++... .-+..-++
T Consensus       239 AHiaGLVA~g~~-p-sP~~-~ADvVTtTTHKTLrGP--rGG~Il~~~~~~~~~~k~~~~~~~~~~kkin~aVFPg~qggp  313 (490)
T 3ou5_A          239 AHISGLVAAKVI-P-SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP  313 (490)
T ss_dssp             GGGHHHHHTTSS-C-CGGG-TCSEEEEESSSTTCSC--SCEEEEEECSEEEECC--CCEEECCCHHHHHHHHTTTTCSSC
T ss_pred             hhhhhhhccccc-C-Cccc-cceEEeccccccccCC--CceEEEeccccccccccccchhHHHHHHHHHhhcCccccccc
Confidence            997 54222211 1 1112 36888777  888865  5666776652               22222211 11111222


Q ss_pred             CHHHHHHHHHHHHHHhh---hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRD---EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~---~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ..-..++...++.....   .++.+++.++.+.+.+.|.+.+..   ++.. ....+++++++.+.  +.+..+..+.|.
T Consensus       314 ~~h~IAAkAVaf~Ea~~p~fk~Ya~qVv~NAkaLA~~L~~~G~~---vvsG-gTdnHlvLvDl~~~--g~tG~~ae~~Le  387 (490)
T 3ou5_A          314 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS---LVSG-GTDNHLVLVDLRPK--GLDGARAERVLE  387 (490)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECGGG--TCCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhCCCe---eecC-CCCceEEEEecccc--CCCHHHHHHHHH
Confidence            33333333333443322   267778888888888888776432   2221 12357777777432  125777778888


Q ss_pred             HCCeEecc---------CCCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKP---------THDTIVRLTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~---------~~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.||.+..         .....|||..+    ....++|++++.+.|.++++
T Consensus       388 ~agItvNkN~iP~D~sp~~~SGiRiGTpa~TtRG~~e~dm~~IA~~I~~~l~  439 (490)
T 3ou5_A          388 LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  439 (490)
T ss_dssp             HTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HcCcEECCCCCCCCCCCCCCCeeEECCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            89998842         23578999764    35688999999998887764

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d2byla1	404	c.67.1.4 (A:36-439) Ornithine aminotransferase {Hu	1e-93
d1z7da1	404	c.67.1.4 (A:7-410) Ornithine aminotransferase {Pla	3e-90
d1vefa1	387	c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine a	2e-78
d1sffa_	425	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	4e-64
d2gsaa_	427	c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase	1e-55
d1s0aa_	429	c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxonona	8e-51
d1zoda1	431	c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {P	2e-44
d1ohwa_	461	c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GA	1e-39
d2v1pa1	467	c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptop	3e-27
d1ax4a_	465	c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanas	7e-25
d1m6sa_	343	c.67.1.1 (A:) Low-specificity threonine aldolase {	3e-19
d1v72a1	345	c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Ps	3e-09
d1c7ga_	456	c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbi	5e-09
d2z67a1	434	c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (	4e-07

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

 Score =  283 bits (726), Expect = 1e-93
 Identities = 174/345 (50%), Positives = 235/345 (68%), Gaps = 6/345 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + AL+ Q +KLTL+SRAFYN+    + E +T +F Y  VLPMNTG E  ETA KLARKWG
Sbjct: 63  VNALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWG 122

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  K     +A IV   G F GRTL+AIS S D  +  GFGP +PG   + + D+ ALE+
Sbjct: 123 YTVKGIQKYKAKIVFAAGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALER 182

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             ++    +A F+ EPIQGEAGV++P  GYL  VR+LC+++ +L IADEIQ+GLAR+GR 
Sbjct: 183 ALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRW 240

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           LA D+E VRPD+V+LGKAL GG+ PVSAVL D ++ML I+PGEH ST+GGNPL   VAIA
Sbjct: 241 LAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIA 300

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +E LAE +  LG  LR  L K+     + V  VRG+GL NA+   +T     A+
Sbjct: 301 ALEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETK-DWDAW 356

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
            +CL++++ G+LAKPTH  I+R  PPL I  +EL+E  + ++  +
Sbjct: 357 KVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTI 401

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]} Length = 404

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

 Score =  275 bits (703), Expect = 3e-90
 Identities = 158/346 (45%), Positives = 224/346 (64%), Gaps = 5/346 (1%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
           + A+  QA+ LT+ SRAF++    +    LT++ GYD VL MNTGAE  ETA KL RKWG
Sbjct: 61  LNAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWG 120

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEK 120
           Y  KK   + A IV C   F GRTL  IS S   +    FGP  P   KV + D+ ALE+
Sbjct: 121 YEVKKIPENMAKIVVCKNNFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE 180

Query: 121 IFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM 180
             K     +  F+ EPIQGEAGVI+P D YL+ V D+C KYN+L +ADE+Q+GL R+G++
Sbjct: 181 ELK--DPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 238

Query: 181 LASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIA 240
           L      V+PD+++LGKAL GG  P+SAVLA+ ++ML I+PGEHGST+GGNPLA+++ + 
Sbjct: 239 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVE 298

Query: 241 SLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY 300
           +L+V+ +EKL E +  LG    ++L +  +     V++VRG+GL  A+EF      V+  
Sbjct: 299 ALNVLINEKLCENAEKLGGPFLENLKRELKDSKI-VRDVRGKGLLCAIEFKNE--LVNVL 355

Query: 301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
           DICLK+KE G++ +  HD  +RLTPPL I+  +L E ++ +   ++
Sbjct: 356 DICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVK 401

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]} Length = 387

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

 Score =  243 bits (622), Expect = 2e-78
 Identities = 108/346 (31%), Positives = 173/346 (50%), Gaps = 21/346 (6%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMN--TGAEGVETALKLARKW 59
           +A++ QAE L    +         F   LT++   ++       +G E  E ALK AR  
Sbjct: 60  EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAH 119

Query: 60  GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALE 119
              KK         V+    F GRT+ ++S++ + +    F PL+     + + D+ AL+
Sbjct: 120 TGRKK--------FVAAMRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALK 171

Query: 120 KIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGR 179
           +      ++ A  + EP+QGE GV      +L+A R++  +   L+I DEIQ+G+ R+G+
Sbjct: 172 RAV---DEETAAVILEPVQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGK 228

Query: 180 MLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI 239
             A +   + PD++ L KALGGG +P+   +  +EV   +  G HG+TFGGNPLA A  +
Sbjct: 229 RFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGV 287

Query: 240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSA 299
           A++  +   +L ER+A LG    + L  I       ++EVRG GL   +E  + A P   
Sbjct: 288 AAIRYLERTRLWERAAELGPWFMEKLRAIPS---PKIREVRGMGLMVGLELKEKAAP--- 341

Query: 300 YDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL 345
             I    KE  +LA     T++R  PPL I   +L+   +A+  VL
Sbjct: 342 -YIARLEKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAVRAVL 386

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]} Length = 425

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

 Score =  208 bits (530), Expect = 4e-64
 Identities = 86/362 (23%), Positives = 161/362 (44%), Gaps = 18/362 (4%)

Query: 1   MKALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLA 56
           + A++ Q +KL+ +       + +    E +      D     L + TG+E VE A+K+A
Sbjct: 62  VAAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA 121

Query: 57  RKWGYVKKKFSIDEAIIVSCCGCFH-----GRTLAAISMSCDNEAIRGFGPLLPGHLKVD 111
           R         +   A                   A + +   +     +   L G  + D
Sbjct: 122 RAATKRSGTIAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDD 181

Query: 112 FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ 171
                        + + IA  + EP+QGE G       +++ +R LC ++ I++IADE+Q
Sbjct: 182 AIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQ 241

Query: 172 SGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGN 231
           SG  R+G + A +   V PD+    K++ GG  P++ V    EVM  + PG  G T+ GN
Sbjct: 242 SGAGRTGTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGGLGGTYAGN 300

Query: 232 PLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF- 290
           P+A   A+  L V   E L +++  LG++L+  L  I ++ P  + +VRG G   A+E  
Sbjct: 301 PIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELF 359

Query: 291 ----DKTALPVSAYDICLKMKERGIL--AKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344
                         +I  + +++G++  +   +  ++R+  PL+I   ++++G + +   
Sbjct: 360 EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC 419

Query: 345 LE 346
            +
Sbjct: 420 FD 421

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]} Length = 427

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

 Score =  186 bits (472), Expect = 1e-55
 Identities = 91/366 (24%), Positives = 151/366 (41%), Gaps = 36/366 (9%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWG 60
           +AL+   EK T  S         V AE +       +MV  +N+G E     L+L R + 
Sbjct: 75  EALKVAMEKGT--SFGAPCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT 132

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPG--------HLKVDF 112
              K        I+   GC+HG     +  +    A  G  P  PG         L   +
Sbjct: 133 GRDK--------IIKFEGCYHGHADMFLVKAGSGVATLGL-PSSPGVPKKTTANTLTTPY 183

Query: 113 GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS 172
            D+ A++ +F E+  +IAG + EPI G +G I+P  G+L+ +R++  +++ L++ DE+ +
Sbjct: 184 NDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEGLREITLEHDALLVFDEVMT 243

Query: 173 GLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---HGSTFG 229
           G  R       +   V PD+  LGK +GGG +PV A    +E+M  + P        T  
Sbjct: 244 GF-RIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIMQLVAPAGPMYQAGTLS 301

Query: 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289
           GNPLA    I +L+++R     E    + + L   L  I Q+  +     +  G+F    
Sbjct: 302 GNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSGMFGFFF 361

Query: 290 FD---------KTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKA 340
            +         K +           M E+GI   P+          L+ +  ++     A
Sbjct: 362 TEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF--EAGFTSLAHTEEDIDATLAA 419

Query: 341 LHDVLE 346
              V+ 
Sbjct: 420 ARTVMS 425

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]} Length = 429

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

 Score =  173 bits (439), Expect = 8e-51
 Identities = 92/364 (25%), Positives = 156/364 (42%), Gaps = 26/364 (7%)

Query: 2   KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWG 60
            A++ Q + ++        +        +L +M    +       +  V   + +     
Sbjct: 66  AAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQ 125

Query: 61  YVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG------------PLLPGHL 108
           Y + K    +  +      +HG T  A+S+   + ++                P      
Sbjct: 126 YWQAKGEARQRFLT-FRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDG 184

Query: 109 KVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGV-IIPPDGYLKAVRDLCSKYNILMIA 167
           + D  D+    ++      +IA  + EPI   AG   +    +LK +R +C +  IL+IA
Sbjct: 185 EWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIA 244

Query: 168 DEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGE---- 223
           DEI +G  R+G++ A +  E+ PD++ LGKAL GG + +SA L  +EV   I  GE    
Sbjct: 245 DEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAGCF 304

Query: 224 -HGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGR 282
            HG TF GNPLA A A ASL ++      ++ A +  +LR+ L   +      V +VR  
Sbjct: 305 MHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD--AEMVADVRVL 362

Query: 283 GLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALH 342
           G    VE      PV+   +     E+G+  +P    I  L PP  I   +LQ  + A++
Sbjct: 363 GAIGVVETTH---PVNMAALQKFFVEQGVWIRPFGKLI-YLMPPYIILPQQLQRLTAAVN 418

Query: 343 DVLE 346
             ++
Sbjct: 419 RAVQ 422

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]} Length = 431

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

 Score =  156 bits (394), Expect = 2e-44
 Identities = 95/366 (25%), Positives = 156/366 (42%), Gaps = 22/366 (6%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLAR-- 57
             + E A KL        +      A RL ++   G D  L ++TGAE  E A+++A+  
Sbjct: 64  SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV 123

Query: 58  --KWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVD---- 111
             K+  V    S       +    +          +  + AI       P   +      
Sbjct: 124 TGKYEIVGFAQSWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDY 183

Query: 112 -FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI 170
                 A + I ++S   +A F+ EPI    G+I  PDGY+ A++  C    +L+I DE 
Sbjct: 184 LAELDYAFDLIDRQSSGNLAAFIAEPILSSGGIIELPDGYMAALKRKCEARGMLLILDEA 243

Query: 171 QSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVM-LCIQPGEHGSTFG 229
           Q+G+ R+G M A   + V PD++ L K LG G+   + V +               +T  
Sbjct: 244 QTGVGRTGTMFACQRDGVTPDILTLSKTLGAGLPLAAIVTSAAIEERAHELGYLFYTTHV 303

Query: 230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVE 289
            +PL +AV +  LDV++ + L  R+  +G+ LR+ L  + ++F   + +VRGRGL   VE
Sbjct: 304 SDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFD-CIGDVRGRGLLLGVE 362

Query: 290 F-----DKTALPVSAYDICLKMKERG----ILAKPTHDTIVRLTPPLSISSNELQEGSKA 340
                  K         I  +    G    I+  P    + R+ PPL++S +E+  G   
Sbjct: 363 IVKDRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSL 422

Query: 341 LHDVLE 346
           L   +E
Sbjct: 423 LGQAIE 428

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]} Length = 461

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

 Score =  144 bits (363), Expect = 1e-39
 Identities = 73/393 (18%), Positives = 136/393 (34%), Gaps = 57/393 (14%)

Query: 2   KALQEQAEKLTLSSRAFYNDKFP-----VFAERL--TSMFGYDMVLPMNTGAEGVETALK 54
           K +Q+     T  +R       P        E L   +  G   ++ M  G+   E A K
Sbjct: 76  KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFK 135

Query: 55  LARKWGYVKKK------------------FSIDEAIIVSCCGCFHGRTLAAISMSCDNEA 96
               W   K++                      +  I+S  G FHGRT+  ++ +     
Sbjct: 136 TIFMWYRSKERGQSAFSKEELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAI 195

Query: 97  IRG---------------------FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFE 135
            +                      F             ++  L   +++    +AG + E
Sbjct: 196 HKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVE 255

Query: 136 PIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS--GLARSGRMLASDWEEVRPDMV 193
           PIQ E G     D + + +RD+  K+    + DE+Q+  G             +   D++
Sbjct: 256 PIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM 315

Query: 194 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER 253
              K +  G          KE      P    +T+ G+P  + +    +++I+ E L   
Sbjct: 316 TFSKKMMTGGFF------HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSN 369

Query: 254 SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILA 313
           +AH G+ L   L  +Q ++P ++  VRGRG F + +    ++      +    + +G++ 
Sbjct: 370 AAHAGKVLLTGLLDLQARYPQFISRVRGRGTFCSFDTPDESI---RNKLISIARNKGVML 426

Query: 314 KPTHDTIVRLTPPLSISSNELQEGSKALHDVLE 346
               D  +R  P L    +          D+L 
Sbjct: 427 GGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA 459

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]} Length = 467

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

 Score =  110 bits (274), Expect = 3e-27
 Identities = 48/366 (13%), Positives = 102/366 (27%), Gaps = 23/366 (6%)

Query: 5   QEQAEKLTLSSRAFYNDK-FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVK 63
           Q     +     AF   + +   AE + ++FGY   +P + G    +  + +  K    +
Sbjct: 57  QSMQAAMMRGDEAFSGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQE 116

Query: 64  KKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIF 122
           K     + +  S       +  + I+                         D+  LE+  
Sbjct: 117 KGLDRSKMVAFSNYFFDTTQGHSQINGCTVRNVYIKEAFDTGVRYDFKGNFDLEGLERGI 176

Query: 123 KESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS------GLA 175
           +E G + +   +       AG        LKA+  +  KY+I ++ D  +          
Sbjct: 177 EEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQ 236

Query: 176 RSGRMLASDWEEVRPDMVIL--------GKALGGGVIPVSAVLADKEVMLCIQPGEHGST 227
           R         E++  +             K     +  +  +  D    +  +       
Sbjct: 237 REAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVV 296

Query: 228 FGGNPL---ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGL 284
             G P        A+  L V   + +            Q+L    ++     ++  G   
Sbjct: 297 QEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAA 356

Query: 285 FNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDV 344
           F      K    + A     +     +         V +   L     +  +      ++
Sbjct: 357 FVDAG--KLLPHIPADQFPAQALACELYKV-AGIRAVEIGSFLLGRDPKTGKQLPCPAEL 413

Query: 345 LELDLP 350
           L L +P
Sbjct: 414 LRLTIP 419

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]} Length = 465

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

 Score =  103 bits (256), Expect = 7e-25
 Identities = 58/370 (15%), Positives = 114/370 (30%), Gaps = 54/370 (14%)

Query: 23  FPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHG 82
           +    ++   +F YD ++P + G         +  K+   + K      + +     FH 
Sbjct: 77  YYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYKQKEGK--AKNPVFI---SNFHF 131

Query: 83  RTLAAISMSCDNEAIRGFGPLLPGHLKVDFG----DITALEKIFKESGDQIAGFLFEPIQ 138
            T AA       +AI             D      DI  L++   + G      +   + 
Sbjct: 132 DTTAAHVELNGCKAINIVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVT 191

Query: 139 GEAGVIIPPD-GYLKAVRDLCSKYNILMIADEIQS------GLARSGRMLASDWEEVRPD 191
             +    P     LK V ++  ++ I ++ D  +         AR  +   +  +EV  D
Sbjct: 192 CNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPKYKNATIKEVIFD 251

Query: 192 MVILGKALG-----GGVIPVSAVLADKEVMLC-------IQPGEHGSTFGGNPLASAVAI 239
           M     AL        ++ +  ++A ++             P E   T+GG       A+
Sbjct: 252 MYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRDMAAM 311

Query: 240 -ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 298
              L+   +E+         + L   L   ++          G  +F   +     +P  
Sbjct: 312 VQGLEEGTEEEYLHYRIGQVKYLGDRL---REAGIPIQYPTGGHAVFVDCKKLVPQIPGD 368

Query: 299 AY----DICLKMKERGILA-----------------KPTHDTIVRLT-PPLSISSNELQE 336
            +     I     E G+ A                 K      +RLT      +++ +  
Sbjct: 369 QFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDY 428

Query: 337 GSKALHDVLE 346
            + AL  + E
Sbjct: 429 IADALIGLKE 438

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]} Length = 343

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

 Score = 85.2 bits (209), Expect = 3e-19
 Identities = 41/321 (12%), Positives = 95/321 (29%), Gaps = 19/321 (5%)

Query: 26  FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 85
                   FG +  L + +G  G + ++    + G      +                  
Sbjct: 39  LERLAAETFGKEAALFVPSGTMGNQVSIMAHTQRGDEVILEADSHIFWYEVGAMAVLSG- 97

Query: 86  AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 145
                           P+   +  +D  D+    +       + +    E     +G  +
Sbjct: 98  ------------VMPHPVPGKNGAMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRV 145

Query: 146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIP 205
            P   +K +  +  ++ I +  D  +   A     +         D V+   + G     
Sbjct: 146 VPLENIKEICTIAKEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAPV 205

Query: 206 VSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHL 265
            S V+ D++ +   +        GG    + V  A+  +   + +              L
Sbjct: 206 GSVVVGDRDFIERARK--ARKMLGGGMRQAGVLAAAGIIALTKMVDRLKEDHENARFLAL 263

Query: 266 FKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTP 325
              +  +    ++V+   +          L V+A+     ++  G+LA    DT +RL  
Sbjct: 264 KLKEIGYSVNPEDVKTNMVI----LRTDNLKVNAHGFIEALRNSGVLANAVSDTEIRLVT 319

Query: 326 PLSISSNELQEGSKALHDVLE 346
              +S N+++E       +  
Sbjct: 320 HKDVSRNDIEEALNIFEKLFR 340

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]} Length = 345

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

 Score = 55.6 bits (132), Expect = 3e-09
 Identities = 34/343 (9%), Positives = 76/343 (22%), Gaps = 23/343 (6%)

Query: 1   MKALQEQAEKLTLSSRAFYNDKFPV-FAERLTSMFGYDM-VLPMNTGAEGVETALKLARK 58
            +AL + +      +  +  D+       +   +F  D+ V  + TG       L     
Sbjct: 20  AQALVKHSSG---QAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMTP 76

Query: 59  WGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL 118
                             C                         +     K+D   +   
Sbjct: 77  PWGNI------------YCHPASHINNDECGAPEFFSNGAKLMTVDGPAAKLDIVRLRER 124

Query: 119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG 178
            +                 Q      I     ++A+ D+C   ++ +  D  +   A   
Sbjct: 125 TREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAIGDVCKSSSLGLHMDGSRFANALVS 184

Query: 179 RMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA 238
              +      +  +  L        +  +  +      L  +        G         
Sbjct: 185 LGCSPAEMTWKAGVDALSFGATKNGVLAAEAIVLFNTSLATEMSYRRKRAGHLSSKMRFL 244

Query: 239 IASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS 298
            A +D    + L  R+A       Q L +  +                    D   +   
Sbjct: 245 SAQIDAYLTDDLWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLDSAMIDA- 303

Query: 299 AYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKAL 341
                L     G         +VR     + ++ ++      +
Sbjct: 304 -----LLKAGFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQV 341

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]} Length = 456

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

 Score = 55.2 bits (132), Expect = 5e-09
 Identities = 52/346 (15%), Positives = 104/346 (30%), Gaps = 48/346 (13%)

Query: 26  FAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTL 85
             + +  +FG+  ++P + G        +LA K G              +          
Sbjct: 80  LEKTVKELFGFKHIVPTHQGRGAENLLSQLAIKPGQYV----AGNMYFTTTRFHQEKNGA 135

Query: 86  AAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVII 145
             + +  D          L    K D  D+  L  + KE G +   ++   +        
Sbjct: 136 TFVDIVRD----EAHDASLNLPFKGDI-DLNKLATLIKEKGAENIAYICLAVTVNLAGGQ 190

Query: 146 PPD-GYLKAVRDLCSKYNILMIADEIQSGLA-------------RSGRMLASDWEEVRPD 191
           P     ++AV ++ S Y I +  D  +                  S + +  +       
Sbjct: 191 PVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEAGYENVSIKDIVHEMFSYADG 250

Query: 192 MVILGKALGGG-----VIPVSAVLADKEVMLCIQPGEHGSTFGGN-PLASAVAIASLDVI 245
             + GK          +      +      L +      S  G       A+AI   + +
Sbjct: 251 CTMSGKKDCLVNIGGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGRDMEAMAIGLREAM 310

Query: 246 RDEKLAER---SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAV---EFDKTAL---- 295
           + E +  R     +LG++LR+    I +    +   +  R     +   +F   +L    
Sbjct: 311 QYEYIEHRVKQVRYLGDKLREAGVPIVEPTGGHAVFLDARRFCPHLTQDQFPAQSLAASI 370

Query: 296 ----PVSAYDICLKMKER----GILAKPTHDTIVRLTPPLSISSNE 333
                V + +  +    R    G   +P  +  VRLT P  + +  
Sbjct: 371 YMETGVRSMERGIVSAGRSKETGENHRPKLE-TVRLTIPRRVYTYA 415

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]} Length = 434

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

 Score = 49.1 bits (116), Expect = 4e-07
 Identities = 34/295 (11%), Positives = 76/295 (25%), Gaps = 23/295 (7%)

Query: 30  LTSMFGYDM-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI 88
                G ++  +          +    A +  Y         A         H   + A+
Sbjct: 122 FFKQLGLNVHAIATPISTGMSISLCLSAARKKYGSNVVIYPYAS--------HKSPIKAV 173

Query: 89  SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPD 148
           S    N  +     +L G     +  +  +E   K+  +                    D
Sbjct: 174 SFVGMNMRL--VETVLDGD--RVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD 229

Query: 149 GYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPV 206
             +  +  +C  Y+I  I +   +              + R D V+    K L   +   
Sbjct: 230 --IVEIAKICENYDIPHIINGAYAIQNNYYLEKLKKAFKYRVDAVVSSSDKNLLTPIGGG 287

Query: 207 SAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLF 266
                D E +  I     G       + + V++ S+      +L +   +  + L + L 
Sbjct: 288 LVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKNSKKLLDELLN 347

Query: 267 KIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV 321
            + ++      +V               +     +I  K+    +          
Sbjct: 348 DLSKKTGGKFLDVESPIASCIS------VNSDPVEIAAKLYNLRVTGPRGIKKTD 396

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d2byla1	404	Ornithine aminotransferase {Human (Homo sapiens) [	100.0
d1vefa1	387	Acetylornithine/acetyl-lysine aminotransferase Arg	100.0
d1z7da1	404	Ornithine aminotransferase {Plasmodium yoelii yoel	100.0
d1sffa_	425	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1s0aa_	429	Adenosylmethionine-8-amino-7-oxononanoate aminotra	100.0
d1zoda1	431	Dialkylglycine decarboxylase {Pseudomonas cepacia	100.0
d2gsaa_	427	Glutamate-1-semialdehyde aminomutase (aminotransfe	100.0
d1ohwa_	461	4-aminobutyrate aminotransferase, GABA-aminotransf	100.0
d1b5pa_	382	Aspartate aminotransferase, AAT {Thermus thermophi	99.97
d1gdea_	388	Aromatic aminoacid aminotransferase, AroAT {Archae	99.97
d1j32a_	388	Aspartate aminotransferase, AAT {Phormidium lapide	99.97
d1fc4a_	401	2-amino-3-ketobutyrate CoA ligase {Escherichia col	99.96
d2r5ea1	418	Kynurenine--oxoglutarate transaminase I {Yellowfev	99.96
d1c7na_	394	Cystalysin {Treponema denticola [TaxId: 158]}	99.96
d1wsta1	403	Multiple substrate aminotransferase, MSAT {Thermoc	99.96
d1xi9a_	395	Putative alanine aminotransferase {Pyrococcus furi	99.96
d1v2da_	368	Glutamine aminotransferase {Thermus thermophilus [	99.96
d1vp4a_	420	Putative aminotransferase TM1131 {Thermotoga marit	99.96
d1bs0a_	383	PLP-dependent acyl-CoA synthase (8-amino-7-oxonano	99.96
d1d2fa_	361	Modulator in mal gene expression, MalY {Escherichi	99.96
d1w7la_	418	Kynurenine--oxoglutarate transaminase I {Human (Ho	99.95
d1m7ya_	431	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d2gb3a1	389	AAT homologue TM1698 {Thermotoga maritima [TaxId:	99.95
d1bw0a_	412	Tyrosine aminotransferase (TAT) {Trypanosoma cruzi	99.95
d2bwna1	396	5-aminolevulinate synthase {Rhodobacter capsulatus	99.95
d1o4sa_	375	Aspartate aminotransferase, AAT {Thermotoga mariti	99.95
d1iaya_	428	1-aminocyclopropane-1-carboxylate synthase (ACC sy	99.95
d1lc5a_	355	L-threonine-O-3-phosphate decarboxylase CobD {Salm	99.95
d1fg7a_	354	Histidinol-phosphate aminotransferase HisC {Escher	99.94
d1u08a_	382	Putative methionine aminotransferase YdbL {Escheri	99.94
d1m6sa_	343	Low-specificity threonine aldolase {Thermotoga mar	99.93
d2f8ja1	334	Histidinol-phosphate aminotransferase HisC {Thermo	99.93
d1elua_	381	Cystine C-S lyase C-des {Synechocystis sp. [TaxId:	99.92
d1jf9a_	405	NifS-like protein/selenocysteine lyase {Escherichi	99.91
d2e7ja1	364	Selenocysteinyl-tRNA synthase (SepSecS) {Archaeogl	99.9
d7aata_	401	Aspartate aminotransferase, AAT {Chicken (Gallus g	99.89
d1t3ia_	408	Probable cysteine desulfurase SufS {Synechocystis	99.88
d1h0ca_	388	Alanine-glyoxylate aminotransferase {Human (Homo s	99.88
d1ajsa_	412	Aspartate aminotransferase, AAT {Pig (Sus scrofa),	99.88
d1p3wa_	391	Cysteine desulfurase IscS {Escherichia coli [TaxId	99.88
d1ax4a_	465	Tryptophan indol-lyase (tryptophanase) {Proteus vu	99.88
d3tata_	397	Aromatic aminoacid aminotransferase, AroAT {Escher	99.88
d1yaaa_	412	Aspartate aminotransferase, AAT {Baker's yeast (Sa	99.87
d1mdoa_	376	Aminotransferase ArnB {Salmonella typhimurium [Tax	99.87
d2q7wa1	396	Aspartate aminotransferase, AAT {Escherichia coli	99.86
d2hoxa1	425	Alliinase {Garlic (Allium sativum) [TaxId: 4682]}	99.86
d2aeua1	366	Hypothetical protein MJ0158 {Archaeon Methanococcu	99.86
d1m32a_	361	2-aminoethylphosphonate transaminase {Salmonella t	99.85
d1v72a1	345	Phenylserine aldolase PSALD {Pseudomonas putida [T	99.85
d2v1pa1	467	Tryptophan indol-lyase (tryptophanase) {Escherichi	99.84
d2ay1a_	394	Aromatic aminoacid aminotransferase, AroAT {Paraco	99.84
d1o69a_	374	Aminotransferase homolog WlaK (PglE, Cj1121c) {Cam	99.84
d1b9ha_	384	3-amino-5-hydroxybenzoic acid synthase (AHBA synth	99.83
d1c7ga_	456	Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 5	99.82
d1vjoa_	377	Alanine-glyoxylate aminotransferase {Cyanobacteria	99.81
d1eg5a_	376	NifS-like protein/selenocysteine lyase {Thermotoga	99.8
d2fnua1	371	Spore coat polysaccharide biosynthesis protein C {	99.8
d1qz9a_	404	Kynureninase {Pseudomonas fluorescens [TaxId: 294]	99.8
d2z67a1	434	Selenocysteinyl-tRNA synthase (SepSecS) {Methanoco	99.79
d1svva_	340	Low-specificity threonine aldolase {Leishmania maj	99.79
d1c4ka2	462	Ornithine decarboxylase major domain {Lactobacillu	99.79
d2ch1a1	388	3-hydroxykynurenine transaminase {Malaria mosquito	99.79
d3bc8a1	445	Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mu	99.79
d2bkwa1	382	Alanine-glyoxylate aminotransferase {Baker's yeast	99.78
d1gc0a_	392	Methionine gamma-lyase, MGL {Pseudomonas putida [T	99.78
d1y4ia1	397	Methionine gamma-lyase, MGL {Citrobacter freundii	99.76
d1iuga_	348	Subgroup IV putative aspartate aminotransferase {T	99.75
d1ibja_	380	Cystathionine beta-lyase, CBL {Thale cress (Arabid	99.75
d1qgna_	398	Cystathionine gamma-synthase, CGS {Common tobacco	99.75
d1cs1a_	384	Cystathionine gamma-synthase, CGS {Escherichia col	99.73
d1cl1a_	391	Cystathionine beta-lyase, CBL {Escherichia coli [T	99.71
d1e5ea_	394	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.69
d1pffa_	331	Methionine gamma-lyase, MGL {Trichomonas vaginalis	99.68
d1pmma_	450	Glutamate decarboxylase beta, GadB {Escherichia co	99.65
d1js3a_	476	DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]	99.64
d2ctza1	421	O-acetyl-L-homoserine sulfhydrylase {Thermus therm	99.63
d1n8pa_	393	Cystathionine gamma-lyase (CYS3) {Baker's yeast (S	99.61
d2c0ra1	361	Phosphoserine aminotransferase, PSAT {Bacillus cir	99.51
d1dfoa_	416	Serine hydroxymethyltransferase {Escherichia coli	99.5
d1kl1a_	405	Serine hydroxymethyltransferase {Bacillus stearoth	99.49
d1bjna_	360	Phosphoserine aminotransferase, PSAT {Escherichia	99.42
d1w23a_	360	Phosphoserine aminotransferase, PSAT {Bacillus alc	99.42
d2a7va1	463	Serine hydroxymethyltransferase {Human (Homo sapie	99.36
d1wyua1	437	Glycine dehydrogenase (decarboxylating) subunit 1	99.32
d1rv3a_	470	Serine hydroxymethyltransferase {Rabbit (Oryctolag	99.27
d1wyub1	471	Glycine dehydrogenase subunit 2 (P-protein) {Therm	99.21
d2ctda2	30	Zinc finger protein 512, ZNF512 {Human (Homo sapie	80.65

>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=8.2e-48  Score=359.10  Aligned_cols=339  Identities=51%  Similarity=0.881  Sum_probs=307.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|++++++++.+....+.++...++++.+++..+.+++++++||++|++.|+++++.+.+..++...++.+++.+.++||
T Consensus        64 ~Av~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sGseA~e~Aik~ar~~~~~~~~~~~~~~~i~~~~~~~h  143 (404)
T d2byla1          64 NALKSQVDKLTLTSRAFYNNVLGEYEEYITKLFNYHKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW  143 (404)
T ss_dssp             HHHHHHHTTCCCCCTTEEESSHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTTCCCTTCCEEEEETTCCC
T ss_pred             HHHHHHHhhCCCcccccccchHHHHHHhhhhcccccccccccCccccchhHHHHHHHHhhhccccccccccccccCCCcc
Confidence            68899999888777666678888899999998899999999999999999999999876555544555689999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+..+.+.++.+..+..+.|...++..+|++|++++++.+..  ++++++++||+++++|.+.++++++++|.++|++|
T Consensus       144 g~t~~~~~~~~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~l~~--~~iAaviiEPi~g~~G~~~~~~~~l~~l~~lc~~~  221 (404)
T d2byla1         144 GRTLSAISSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQD--PNVAAFMVEPIQGEAGVVVPDPGYLMGVRELCTRH  221 (404)
T ss_dssp             CCSHHHHTTCCCHHHHTTSCSCCTTEEEECTTCHHHHHHHHTS--TTEEEEEECSSBTTTTSBCCCTTHHHHHHHHHHHH
T ss_pred             ccccceeccCCCcccccCCCCCCCCeeEecccCHHHHHHhcCC--CCeEEEEECCccCCCCCccCCHHHHHHHHHHHHhc
Confidence            9999999999999999999999888999999999999999974  58999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+++||+|+|..++++.+++.||+++++|+++||++|+|.++.++++++.+.+..+++||++++++++++.++
T Consensus       222 g~llI~DEV~tGfgR~G~~~a~~~~gv~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  301 (404)
T d2byla1         222 QVLFIADEIQTGLARTGRWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGEHFSTYGGNPLGCRVAIAA  301 (404)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTSCTTSSCCSSTTCHHHHHHHHHH
T ss_pred             CeEEEeeccccccccccccchhhhcCCCCCEEEECchhhCCCccceeeeechhhhhccCCCCCCcCCCcCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998549999999999999999988999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      |+.++++++.++.++..+++.+.|+++..   +.+..+++.|.+..+.+.+... ....++.+.|+++|+++.+.+++.+
T Consensus       302 L~~i~~~~l~~~~~~~g~~l~~~l~~l~~---~~i~~vRg~Gl~~~i~~~~~~~-~~~~~~~~~l~~~Gvl~~~~~~~~i  377 (404)
T d2byla1         302 LEVLEEENLAENADKLGIILRNELMKLPS---DVVTAVRGKGLLNAIVIKETKD-WDAWKVCLRLRDNGLLAKPTHGDII  377 (404)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHTSCT---TTEEEEEEETTEEEEEECCCSS-CCHHHHHHHHHHTTEECEEEETTEE
T ss_pred             HHHHHhcCchhhhhHhhHHHHHHHHhhcc---ccceeeeecccEEEEEEecCCc-hhHHHHHHHHHhCCeEEecCCCCEE
Confidence            99999999999999999999999988742   4677889999999998854321 2567899999999999998778999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |++|+++.|++|+++++++|+++++
T Consensus       378 ~l~PpL~it~~~id~~~~~l~~al~  402 (404)
T d2byla1         378 RFAPPLVIKEDELRESIEIINKTIL  402 (404)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEECCcCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987

>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine aminotransferase ArgD {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Acetylornithine/acetyl-lysine aminotransferase ArgD
species: Thermus thermophilus [TaxId: 274]

Probab=100.00  E-value=4.6e-47  Score=352.05  Aligned_cols=325  Identities=34%  Similarity=0.542  Sum_probs=296.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|+.++++++.+....+.++...++++.+.+..  +.++++|++||++|++.|+++++.+.        ++.+|+.+.++
T Consensus        60 ~a~~~~~~~~~~~~~~~~~~~~~~la~~l~~~~~~~~~~v~f~~sGseA~e~Aik~Ar~~t--------~r~~ii~~~~~  131 (387)
T d1vefa1          60 EAVKRQAETLMAMPQTLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHT--------GRKKFVAAMRG  131 (387)
T ss_dssp             HHHHHHHHHCCCCCTTSCCHHHHHHHHHHHHTSCTTEEEEEEESSHHHHHHHHHHHHHHHH--------SCCEEEEETTC
T ss_pred             HHHHHHHHhhcccccccCCchHHHHHHHhhhhccccceeeccccCchHHHHHHHHHHHhhc--------ccceecccccC
Confidence            688999998877666667888888999998876  34589999999999999999998763        24899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS  159 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~  159 (374)
                      |||.+..+..+++.+.++..+.|...++..+|++|++.|++.+.   +++++|++||+++++|.+.++++++++|.++|+
T Consensus       132 yHG~t~~~~~~s~~~~~~~~~~p~~~~~~~~p~~d~~~l~~~~~---~~iAavi~EPi~g~~G~~~~~~~~l~~l~~lc~  208 (387)
T d1vefa1         132 FSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYNDVEALKRAVD---EETAAVILEPVQGEGGVRPATPEFLRAAREITQ  208 (387)
T ss_dssp             CCCSSHHHHHTCCCHHHHGGGCSCSSCEEEECTTCHHHHHHHCC---TTEEEEEECSEETTTTSEECCHHHHHHHHHHHH
T ss_pred             CCCCccceEeccCCccccCCCCCCCCCceEeCCCCHHHHHHhcC---CCeEEEEEECCCCCCCCccCCHHHHHHHHHHHH
Confidence            99999999999998888888888888899999999999998886   689999999999999999999999999999999


Q ss_pred             hcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHH
Q 017259          160 KYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAI  239 (374)
Q Consensus       160 ~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~  239 (374)
                      +||+++|+||+++||||+|..++.+.+++.||+++++|++++|+ +++.++..++.++.+.+..+++||++++++++|+.
T Consensus       209 ~~g~llI~DEV~tGfgR~G~~~~~~~~~v~PDi~~~gK~l~gG~-~~~~~~~~~~~~~~~~~~~~g~T~~gnPla~aaa~  287 (387)
T d1vefa1         209 EKGALLILDEIQTGMGRTGKRFAFEHFGIVPDILTLAKALGGGV-PLGVAVMREEVARSMPKGGHGTTFGGNPLAMAAGV  287 (387)
T ss_dssp             HHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECGGGGTTS-SCEEEEEEHHHHHTSCTTSSCCSSTTCHHHHHHHH
T ss_pred             HcCceEEecccccccCccCCCcccccCCcCCceeeecccCCCCc-cccccccceeeeeccccCCccccCCCCcchhhhcc
Confidence            99999999999999999999999999999999999999999998 99999999999999999899999999999999999


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCC
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDT  319 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~  319 (374)
                      +.++.+.++++.+++++..+++.+.|+++..   +.+..+++.|.++.+++++.    ....+.+.+.++|+++.+.+++
T Consensus       288 a~L~~l~~~~~~~~v~~~g~~l~~~L~~l~~---~~v~~vrg~Gl~~~ie~~~~----~~~~~~~~~~~~g~l~~~~g~~  360 (387)
T d1vefa1         288 AAIRYLERTRLWERAAELGPWFMEKLRAIPS---PKIREVRGMGLMVGLELKEK----AAPYIARLEKEHRVLALQAGPT  360 (387)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHTSCC---TTEEEEEEETTEEEEEESSC----SHHHHHHHHHHHCEECEESSTT
T ss_pred             cchhhcccccccchHhhhhHHHHHHHHhcCC---CceEEEeecceEEEEEEeCC----chHHHHHHHHHCCCeEEecCCC
Confidence            9999999889999999999999999987632   36778899999999999776    4667888889999998888889


Q ss_pred             EEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          320 IVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       320 ~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .+|++|++.+|++|+++++++|++++
T Consensus       361 ~ir~~Ppl~it~~~ld~~~~~i~~aL  386 (387)
T d1vefa1         361 VIRFLPPLVIEKEDLERVVEAVRAVL  386 (387)
T ss_dssp             EEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             EEEEECCccCCHHHHHHHHHHHHHHh
Confidence            99999999999999999999999887

>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium yoelii yoelii [TaxId: 73239]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Ornithine aminotransferase
species: Plasmodium yoelii yoelii [TaxId: 73239]

Probab=100.00  E-value=8.6e-45  Score=339.26  Aligned_cols=342  Identities=46%  Similarity=0.821  Sum_probs=280.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +|+.++++++.+......+...+.+++.+++..+.+.+.|++||++|++.|+++++.++.........+..++.+..+||
T Consensus        62 ~Ai~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~sgs~a~~~a~k~ar~~~~~~~~~~~~~~~~~~~~~~~h  141 (404)
T d1z7da1          62 NAMINQAKNLTICSRAFFSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFS  141 (404)
T ss_dssp             HHHHHHHTTCSCCCTTSEEHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHHHHHHHHTSCCCTTCCEEEEETTC--
T ss_pred             HHHHHHHHhCCCcccccchHHHHHHHHhhhhccccceeeeeccccchHHHHHHHHHHHHhhcccccccccccccccccCC
Confidence            67888888877766555455666677777777799999999999999999999998775333222344578999999999


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      |.+.......+...++..+.|....+...|+++.+.++..+..  +++++|++||+++++|.+.++++++++|.++|++|
T Consensus       142 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~iAavi~EPi~g~~G~~~~~~~fl~~l~~lc~~~  219 (404)
T d1z7da1         142 GRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEEELKD--PNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKY  219 (404)
T ss_dssp             ------------------------CEEEECTTCHHHHHHHHTS--TTEEEEEECSSBSTTTSBCCCTTHHHHHHHHHHHT
T ss_pred             CCcccccccccccccccCCCCCCccccccccchHHHHHHHhcC--CCEEEEEEEEEcCCCCCccCCHHHHHHHHHHHHHc
Confidence            9999999888888887777777778888999999999887753  58999999999999999999999999999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+++|+||+++||+|+|..++++.+++.||++++||++++|.+++|.+++++++.+.+.+..+++||++++++++|+.+.
T Consensus       220 g~llI~DEV~tGfgRtG~~~~~e~~gv~PDivt~gK~l~gG~~p~~~v~~~~~i~~~~~~~~~~~T~~gnpl~~aaa~a~  299 (404)
T d1z7da1         220 NVLFVADEVQTGLGRTGKLLCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGEHGSTYGGNPLAASICVEA  299 (404)
T ss_dssp             TCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTTSSCCEEEEECHHHHTTCCTTCCCCTTTTCHHHHHHHHHH
T ss_pred             CCEEEEEcCccCCCcccccccccccCCCCCEEEEcccccCCCCCcccccchHHHHccCCCCCcCcCCCCCcchhhhhhhh
Confidence            99999999999999999999999999999999999999988449999999999999999998999999999999999999


Q ss_pred             HHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEE
Q 017259          242 LDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIV  321 (374)
Q Consensus       242 l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~l  321 (374)
                      |+.+.++++.+++.+..+++.+.+......+ +.+..+++.|.++.+++.++..  ...++...|+++|+++.+.+++.+
T Consensus       300 L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~v~~vrg~Gl~~~i~~~~~~~--~~~~~~~~l~~~Gl~~~~~~~~~i  376 (404)
T d1z7da1         300 LNVLINEKLCENAEKLGGPFLENLKRELKDS-KIVRDVRGKGLLCAIEFKNELV--NVLDICLKLKENGLITRDVHDKTI  376 (404)
T ss_dssp             HHHHHHTTHHHHHHHHHHHHHHHHHHHHTTC-TTEEEEEEETTEEEEEECTTTC--CHHHHHHHHHHTTEECCEETTTEE
T ss_pred             hhhhhcchhhhhhccchhHHHHHHHHHHhcC-CCeEEEEeeCcEEEEEEcCCcc--cHHHHHHHHHhCCeEEecCCCCEE
Confidence            9999888999999999999999999988776 4888999999999999965431  466799999999999999888999


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      |+.|++.+|++++++++++|+++++ ++
T Consensus       377 r~~Ppl~it~~~id~~~~~l~~alk-~~  403 (404)
T d1z7da1         377 RLTPPLCITKEQLDECTEIIVKTVK-FF  403 (404)
T ss_dssp             EECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             EEECCcCCCHHHHHHHHHHHHHHHH-hh
Confidence            9999999999999999999999998 54

>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=9.7e-45  Score=341.31  Aligned_cols=338  Identities=28%  Similarity=0.523  Sum_probs=285.2

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++++.+... ...++...+++++|.+...   .+.++|++|||+|++.|+++++.+.        ++.+|+.+.
T Consensus        63 ~ai~~q~~~~~~~~~~~~~~~~~~~la~~l~~~~p~~~~~~v~f~~sGseA~e~Alk~ar~~t--------~r~~ii~~~  134 (425)
T d1sffa_          63 AAVEAQLKKLSHTCFQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAAT--------KRSGTIAFS  134 (425)
T ss_dssp             HHHHHHTTTCSCCCTTTEECHHHHHHHHHHHHHSSCSSCEEEEEESSHHHHHHHHHHHHHHHH--------TCCEEEEET
T ss_pred             HHHHHHHhhcCCcccccccCcHHHHHHHHHHhhhhhcccceeeeeccccchhhhHHHHhhhhh--------cccceEeec
Confidence            688888888877553 3557788899999999873   4689999999999999999999764        248899999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCcee-ccCC----C------HHHHHHHHH--hcCCcEEEEEEccccCCCCcc
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLK-VDFG----D------ITALEKIFK--ESGDQIAGFLFEPIQGEAGVI  144 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~----d------~~~le~~l~--~~~~~~~~vi~~~~~~~~g~~  144 (374)
                      ++|||.+..+..+++.......+.+..+.... .+++    +      ....++.+.  ...++++++++||+++++|.+
T Consensus       135 ~~yHG~t~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vaavi~EPi~g~~G~~  214 (425)
T d1sffa_         135 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHRIFKNDAAPEDIAAIVIEPVQGEGGFY  214 (425)
T ss_dssp             TCCCCSSHHHHHHSSCCTTTTTTSCCCCSSEEEECCCBGGGTBCHHHHHHHHHHHHHHTCCGGGEEEEEECSBCTTTTSC
T ss_pred             CCCcCccccchhhcCCCCcccCCcccccCCccccCCccccccccchhhHHHHHHHHHhcccccceEEEEecCccCCCCcc
Confidence            99999999999888766555444333332221 2221    0      111222222  234679999999999999999


Q ss_pred             cCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCC
Q 017259          145 IPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEH  224 (374)
Q Consensus       145 ~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~  224 (374)
                      .+++++++.|.++|++||+++|+||+++|++|+|..++++.+++.||++++||+++||+ |+|.+++++++++.+.+..+
T Consensus       215 ~~~~~~l~~l~~lc~~~gillI~DEV~tG~gR~g~~~a~~~~gv~PDi~~~gK~l~gG~-P~~av~~~~~i~~~~~~~~~  293 (425)
T d1sffa_         215 ASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL  293 (425)
T ss_dssp             BCCHHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGTTSCCSEEEECGGGGTSS-CCEEEEEEHHHHTTSCTTSB
T ss_pred             cCCHHHHHHHHHHHHHcCceEEeccccccCCCcchhhHHHhcCCCccceecccccCCCc-ceEEEEEcHHHHHhhCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999998 99999999999999999889


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC-----chhH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL-----PVSA  299 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~-----~~~~  299 (374)
                      ++||++++++++|+.++|+.++++++.++++...+++.+.|+++...+| .+..+++.|.++.+++..+..     ....
T Consensus       294 ~~T~~gnpl~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~~-~v~~vrg~Gl~~~i~f~~~~~~~~~~~~~~  372 (425)
T d1sffa_         294 GGTYAGNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHP-EIGDVRGLGAMIAIELFEDGDHNKPDAKLT  372 (425)
T ss_dssp             CCSSSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHTCT-TEEEEEEETTEEEEEEBGGGCTTSBCHHHH
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhhhHhhCC-ceEEEEccccEEEEEEeccCccCCccHHHH
Confidence            9999999999999999999999999999999999999999999988874 888899999999998843211     1245


Q ss_pred             HHHHHHHHHCCeEeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          300 YDICLKMKERGILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~--~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      ..+.++|+++|+++.+.  ..+.+|++|++.+|++|+++++++|+++++ +++
T Consensus       373 ~~~~~~l~~~Gvl~~~~g~~~n~i~~~PpL~it~~eid~~l~~l~~al~-eik  424 (425)
T d1sffa_         373 AEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFD-EAK  424 (425)
T ss_dssp             HHHHHHHHHTTEECEEESTTSCEEEECCCTTCCHHHHHHHHHHHHHHHH-HHC
T ss_pred             HHHHHHHHHCCCEEeccCCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hhc
Confidence            67999999999999875  368899999999999999999999999998 764

>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, BioA
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=5.4e-44  Score=335.47  Aligned_cols=338  Identities=28%  Similarity=0.448  Sum_probs=284.8

Q ss_pred             hHHHHHHHhccccCc-CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEecc
Q 017259            2 KALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCG   78 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~   78 (374)
                      +|++++++++.+..+ .+.++...++++++.+..  +.++++|++||++|++.|+++++.++ ..+|  .++.+|+.+.+
T Consensus        66 ~Ai~~q~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~v~f~~sGseA~e~A~k~ar~~~-~~~g--~~~~~ii~~~~  142 (429)
T d1s0aa_          66 AAMKSQIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYW-QAKG--EARQRFLTFRN  142 (429)
T ss_dssp             HHHHHHHHHCSCCCCSSEECHHHHHHHHHHHHHSCTTCCEEEEESSHHHHHHHHHHHHHHHH-HHHT--CCCCEEEEETT
T ss_pred             HHHHHHHHhcCCcccCCccchHHHHHHHHHHhhhccCcceeeeccccccchhhhhhhhhhee-eccc--ccccEEEEecC
Confidence            688999999877543 456777888999998876  66799999999999999999999876 3333  23378999999


Q ss_pred             CCCCcccccccccCCccccccCCCCCC-Cceec-----------cCCCHHHHHHHHHhcCCcEEEEEEcccc-CCCCccc
Q 017259           79 CFHGRTLAAISMSCDNEAIRGFGPLLP-GHLKV-----------DFGDITALEKIFKESGDQIAGFLFEPIQ-GEAGVII  145 (374)
Q Consensus        79 ~yhg~~~~~~~~~~~~~~~~~~~~~~~-~~~~~-----------~~~d~~~le~~l~~~~~~~~~vi~~~~~-~~~g~~~  145 (374)
                      +|||.+..+..+++.......+.+... .....           +..+++++++.+.+++++++++++||+. +.+|.+.
T Consensus       143 ~yHG~t~~a~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iaavivEPi~~~~gg~~~  222 (429)
T d1s0aa_         143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMAAHRHEIAAVIIEPIVQGAGGMRM  222 (429)
T ss_dssp             CCCCSSHHHHTTSCTTTTTGGGGTTTSCCCEEECCCCSBC-CCCCGGGGHHHHHHHHHHTTTEEEEEECSSEECTTTCEE
T ss_pred             CccccchhhhhhcCCccccccccCccccccccccccccccccccchhhhhhhhhhhhhcCCccceeeecceeccCCCccC
Confidence            999999999888876544433222111 11111           1225778888888888899999999986 5567778


Q ss_pred             CChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC---
Q 017259          146 PPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG---  222 (374)
Q Consensus       146 ~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~---  222 (374)
                      ++++++++|.++|++||+++|+||+++||||+|..++++.+++.||+++++|++++|++|++.+++++++.+.+.+.   
T Consensus       223 ~~~~fl~~lr~lc~~~gillI~DEV~tGfGRtG~~~~~~~~~v~PDi~~~gK~l~gG~~p~~av~~~~~i~~~~~~~~~~  302 (429)
T d1s0aa_         223 YHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISNGEAG  302 (429)
T ss_dssp             BCTHHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSGGGGGTCCCSEEEECGGGGTSSSCCEEEEECHHHHHHHHTSTTS
T ss_pred             CCHHHHHHHHHHHHHcCcceehhhccccccccccccccccceecccccccccccccccccccchhhHHHHHhccCCCCCc
Confidence            89999999999999999999999999999999999999999999999999999998755999999999998877542   


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHH
Q 017259          223 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAY  300 (374)
Q Consensus       223 --~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~  300 (374)
                        .++.||+++++++++++++|+.++++++.+++++..+++++.|+++.. . +.+.++++.|.++.+++....   ...
T Consensus       303 ~~~~~~T~~gnp~~~aaa~a~L~~i~~~~~~~~~~~~g~~l~~~L~~l~~-~-~~v~~vrg~Gl~~~~e~~~~~---~~~  377 (429)
T d1s0aa_         303 CFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARD-A-EMVADVRVLGAIGVVETTHPV---NMA  377 (429)
T ss_dssp             SCSCCCTTTTCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHGGGGG-C-TTEEEEEEETTEEEEEESSCB---CHH
T ss_pred             ceeecCCCCCCcccchhhhccccccccccccchhhHHHHHHHHHHHHhcc-C-CceEEEeecccEEEEEecCcc---cHH
Confidence              467899999999999999999999999999999999999999988754 3 578889999999999986654   678


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+.|+++|+++.+. ++.+|++|+++.|++|+++++++|+++++ +.
T Consensus       378 ~~~~~~~~~Gl~~~~~-g~~i~~~Ppl~it~~eid~~~~~l~~al~-e~  424 (429)
T d1s0aa_         378 ALQKFFVEQGVWIRPF-GKLIYLMPPYIILPQQLQRLTAAVNRAVQ-DE  424 (429)
T ss_dssp             HHHHHHHHTTEECCCB-TTEEEECCCTTCCHHHHHHHHHHHHHHTS-SG
T ss_pred             HHHHHHHHCCcEEEec-CCEEEEeCCcCCCHHHHHHHHHHHHHHHH-hh
Confidence            8999999999999887 47999999999999999999999999998 43

>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase {Pseudomonas cepacia [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Dialkylglycine decarboxylase
species: Pseudomonas cepacia [TaxId: 292]

Probab=100.00  E-value=2.7e-43  Score=332.17  Aligned_cols=334  Identities=30%  Similarity=0.489  Sum_probs=279.8

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGC   79 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~   79 (374)
                      +|++++++++.+..+.+.++...+++++|++..  +.++++|++|||+|++.|+++++.+.        +|++|+.+.++
T Consensus        64 ~ai~~q~~~~~~~~~~~~~~~~~~la~~L~~~~~~~~~~v~f~~sGseA~e~Alk~Ar~~t--------~r~~i~~~~~~  135 (431)
T d1zoda1          64 SVIGEYAGKLDHLFSEMLSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT--------GKYEIVGFAQS  135 (431)
T ss_dssp             HHHHHHHHHCCCCCTTCCCHHHHHHHHHHHHHSCTTCCEEEEESCHHHHHHHHHHHHHHHH--------TCCEEEEETTC
T ss_pred             HHHHHHHhhccccccccccHHHHHHHHHHHHhCCcccceeeecccccchHHHHHHHHHHhc--------CCcceeecccc
Confidence            689999999888776677889999999999976  78999999999999999999998763        34899999999


Q ss_pred             CCCcccccccccCCccccccCCCCCCCceeccCC-----------------CHHHHHHHHH-hcCCcEEEEEEccccCCC
Q 017259           80 FHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-----------------DITALEKIFK-ESGDQIAGFLFEPIQGEA  141 (374)
Q Consensus        80 yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------d~~~le~~l~-~~~~~~~~vi~~~~~~~~  141 (374)
                      |||.+..+...+..+.. ..+.+...+...++..                 +++.+++.+. ..+++++++++||+++++
T Consensus       136 yHG~t~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~iAavi~EPi~g~~  214 (431)
T d1zoda1         136 WHGMTGAAASATYSAGR-KGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLIDRQSSGNLAAFIAEPILSSG  214 (431)
T ss_dssp             CCCSSHHHHHTCCSSCC-SSSCCCCTTEEEECCCCTTSCCCEETTEECHHHHHHHHHHHHHHHCCSCEEEEEECSEETTT
T ss_pred             cccccchhhcccccccc-cccCCcccCceeeeeecccccccccccchhhhhhHHHHHHHHHHhccccccceeeccccccC
Confidence            99999888877765433 3333333333333221                 1233333333 345789999999999999


Q ss_pred             CcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC
Q 017259          142 GVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP  221 (374)
Q Consensus       142 g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~  221 (374)
                      |.+.++++++++|.++|++||+++|+||+++||+|+|..++.+++++.||+++++|+++||+ +++.+++.++..+....
T Consensus       215 G~~~~~~~yl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~~~~gv~PDi~~~gK~l~gG~-p~~av~~~~~~~~~~~~  293 (431)
T d1zoda1         215 GIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTMFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHE  293 (431)
T ss_dssp             TCEECCTTHHHHHHHHHHHHTCEEEEECTTTTTTTTSSSSTHHHHTCCCSEEEECHHHHTTS-SCEEEEECHHHHHHHHH
T ss_pred             CccCCCHHHHHHHHHHHHhcCceEEeccccccccccccccccccCCCCcchhcccccccccc-ccceeeeeecchhhhhc
Confidence            99999999999999999999999999999999999999999999999999999999999999 99998888877665532


Q ss_pred             --CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----
Q 017259          222 --GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----  295 (374)
Q Consensus       222 --~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----  295 (374)
                        ..+++||++++++++|+.++++.++++++.++..+..+++.+.++.+...+ +.+.++++.|.++.+++..+..    
T Consensus       294 ~~~~~~~T~~g~pl~~aaa~a~l~~i~~~~~~~~~~~~g~~l~~~l~~~~~~~-~~i~~vrG~Glm~~ie~~~~~~~~~~  372 (431)
T d1zoda1         294 LGYLFYTTHVSDPLPAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERF-DCIGDVRGRGLLLGVEIVKDRRTKEP  372 (431)
T ss_dssp             TTCCCCCTTTTCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHC-TTEEEEEEETTEEEEEEEEETTTTEE
T ss_pred             ccccccCCCCCCcchHHHHHHHHHHhhhhhhhHHHHHHHHHHhhhhhhhhhcC-CCeEEEeecceEEEEEEecCCcccCc
Confidence              346789999999999999999999999999999999999999999998887 4888999999999998732211    


Q ss_pred             -chhHHHHHHHHHHCCeEe----ccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 -PVSAYDICLKMKERGILA----KPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 -~~~~~~~~~~l~~~Gi~v----~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       .....++.+.|+++|+..    .+..++.||++|++++|++|+++++++|+++++
T Consensus       373 ~~~~~~~i~~~~~~~Gl~~~~~~~~~~~~~i~l~Ppl~it~~eid~~~~~l~~al~  428 (431)
T d1zoda1         373 ADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE  428 (431)
T ss_dssp             CTTHHHHHHHHHHHTTEECCEECCTTSCCEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcccCeeeecCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence             123677899999999753    445678999999999999999999999999998

>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase (aminotransferase) {Synechococcus sp., strain GR6 [TaxId: 1131]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Glutamate-1-semialdehyde aminomutase (aminotransferase)
species: Synechococcus sp., strain GR6 [TaxId: 1131]

Probab=100.00  E-value=6.3e-42  Score=321.82  Aligned_cols=332  Identities=26%  Similarity=0.375  Sum_probs=274.6

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc-CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF-GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~-~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +|++++++++.+..  ........+++.+.+.. +.+.++|++||++|++.|+++++.++        +|++|+.+..+|
T Consensus        75 ~ai~~~~~~~~~~~--~~~~~~~~la~~~~~~~~~~~~v~f~~sGseA~e~Alk~ar~~t--------~r~~ii~~~~~y  144 (427)
T d2gsaa_          75 EALKVAMEKGTSFG--APCALENVLAEMVNDAVPSIEMVRFVNSGTEACMAVLRLMRAYT--------GRDKIIKFEGCY  144 (427)
T ss_dssp             HHHHHHHTTCSCCS--SCCHHHHHHHHHHHHHSTTCSEEEEESSHHHHHHHHHHHHHHHH--------CCCEEEEETTCC
T ss_pred             HHHHHHHHhcCccc--cchhHHHHHHHHHHhhCCccccccccCCcHHHHHHHHHHHHHhc--------CCCeEEEEeccc
Confidence            67888888765543  33556667888888865 66799999999999999999998764        348999999999


Q ss_pred             CCcccccccccCCccccccCCCC-------CCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           81 HGRTLAAISMSCDNEAIRGFGPL-------LPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        81 hg~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ||.+..+.++++.+.....+...       ..+....+++|++++++.+++++++++++++||+++++|.+.++++++++
T Consensus       145 HG~t~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~le~~~~~~~~~iaavi~Epi~g~~G~~~~~~~~l~~  224 (427)
T d2gsaa_         145 HGHADMFLVKAGSGVATLGLPSSPGVPKKTTANTLTTPYNDLEAVKALFAENPGEIAGVILEPIVGNSGFIVPDAGFLEG  224 (427)
T ss_dssp             CCSCGGGCSSCCHHHHHTTCCSCSSSCHHHHTTEEEECTTCHHHHHHHHTTSTTTEEEEEECSSBCSSSCBCCCTTHHHH
T ss_pred             ccCcceeeeecCCcccccCCCCCCCCcccCccceeccCcchHHHHHHHHHhCCCCeEEEEEcCCcCCCCCccCCHHHHHH
Confidence            99999988887654433322111       12355667889999999999888899999999999999999999999999


Q ss_pred             HHHHHHhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCC---CCCCCCCCC
Q 017259          154 VRDLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQP---GEHGSTFGG  230 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~---~~~~~~~~~  230 (374)
                      |.++|++||+++|+||+++|| ++|..++.+++++.||+++++|+++||+ ++|++++++++++.+.+   ..+++||++
T Consensus       225 l~~lc~~~~~llI~DEv~tG~-r~g~~~~~~~~gi~PDi~~~gK~lggG~-p~~a~~~~~~i~~~~~~~~~~~~~~T~~g  302 (427)
T d2gsaa_         225 LREITLEHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGKIIGGGL-PVGAYGGKREIMQLVAPAGPMYQAGTLSG  302 (427)
T ss_dssp             HHHHHHHTTCEEEEECTTTBT-TTBTTCHHHHTTCCCSEEEECGGGGTTS-CCEEEEECHHHHTTBTTTSSBCCCCTTTT
T ss_pred             HHHHHHHhceeeeeccccccc-eecccchHHhcCCCHHHHhhhhccCCCc-ceeeeeehHHHHHHhcccCCCcCCCCCCC
Confidence            999999999999999999999 7799999999999999999999999998 99999999999998875   356789999


Q ss_pred             CHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC----------chhHH
Q 017259          231 NPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL----------PVSAY  300 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~----------~~~~~  300 (374)
                      ++++++|++++++.+.++++.++++++.+++++.|+++..+++ ......+.+.++.+.+.....          .....
T Consensus       303 npla~AAala~Le~i~~~~l~~~~~~~g~~l~~~L~~l~~~~~-~~~~v~~~ggm~~i~~~~~~v~~~~~~~~~d~~~~~  381 (427)
T d2gsaa_         303 NPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETG-HAACGGQVSGMFGFFFTEGPVHNYEDAKKSDLQKFS  381 (427)
T ss_dssp             CHHHHHHHHHHHHHHTSTTHHHHHHHHHHHHHHHHHHHHHHTT-CCCEEEEETTEEEEESSSCCCCSHHHHTTSCHHHHH
T ss_pred             CchhhHHHHHhhHHhhhhhHHhhhhHHHHHHHHHHHHHHhhcC-CCcEEcccCCeEEEEEeccCCCCHHHhhcccHHHHH
Confidence            9999999999999999889999999999999999999988763 555566666676665532211          11234


Q ss_pred             HHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          301 DICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+...|+++||++.|.....  +.+++++|++|+++++++|+++++ ++
T Consensus       382 ~~~~~ll~~Gv~l~p~~~~~--~~~~l~~Te~dId~~l~al~~al~-~L  427 (427)
T d2gsaa_         382 RFHRGMLEQGIYLAPSQFEA--GFTSLAHTEEDIDATLAAARTVMS-AL  427 (427)
T ss_dssp             HHHHHHHHTTEECCSSTTSC--EECCTTCCHHHHHHHHHHHHHHHT-CC
T ss_pred             HHHHHHHHCCEEECCCCCcc--eeCCCCCCHHHHHHHHHHHHHHHH-hC
Confidence            68888999999998864332  336789999999999999999998 53

>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase, GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 4-aminobutyrate aminotransferase, GABA-aminotransferase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=100.00  E-value=3.2e-42  Score=326.49  Aligned_cols=336  Identities=22%  Similarity=0.349  Sum_probs=268.0

Q ss_pred             hHHHHHHHhccccCc-----CCCCCcHHHHHHHHhccc--CCCeEEecCChHHHHHHHHHHHHHccccccc---------
Q 017259            2 KALQEQAEKLTLSSR-----AFYNDKFPVFAERLTSMF--GYDMVLPMNTGAEGVETALKLARKWGYVKKK---------   65 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~-----~~~~~~~~~l~~~l~~~~--~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G---------   65 (374)
                      +|+.+++++..+...     ..+....++|+++|.+..  +.++++|++||++|++.|+++++.|...+..         
T Consensus        76 ~ai~~q~~~~~~~~~~~~~~~~~~~~a~~lae~l~~~~~~~~~~v~f~~sGseAve~Aik~Ar~~~~~~~~~~~~~~~~~  155 (461)
T d1ohwa_          76 KLVQQPQNVSTFINRPALGILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEE  155 (461)
T ss_dssp             HHHHCGGGHHHHHCCCCTTTSCBTTHHHHHHHTGGGGCCTTCCEEEEESSHHHHHHHHHHHHHHHHHHHHHTTCCCCHHH
T ss_pred             HHHHHHHhhhhhcccccccccchHHHHHHHHHHHHhhhccCcceeeeecchhhhhHHHHHHHHHHhhhcccCcccccchh
Confidence            456666665443221     122344566777777655  6789999999999999999999876421100         


Q ss_pred             ---------CCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceec----cC--------------CCHHHH
Q 017259           66 ---------FSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKV----DF--------------GDITAL  118 (374)
Q Consensus        66 ---------~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~--------------~d~~~l  118 (374)
                               ...++.+||.+.++|||.+..+.++++.+.++..+.+........    ++              .+.+++
T Consensus       156 ~~~~~~~~~~~~~~~~Ii~~~~syHG~t~~a~s~tg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  235 (461)
T d1ohwa_         156 LETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPLEEFVKENQQEEARCLEEV  235 (461)
T ss_dssp             HHHHHTTCTTTSCCCEEEEETTCCCCSSHHHHHTCCSCHHHHTTCCCCCCCEECCCCCCSSGGGCHHHHHHHHHHHHHHH
T ss_pred             hhhhhhccccCCCCceEEEecCCcCCCCcccccccCCcccccccccccCCcccccccccccccccccccchhhhhhHHHH
Confidence                     002246899999999999999999998876665444432221110    00              023455


Q ss_pred             HHHHH---hcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcccccCCC--CCcEE
Q 017259          119 EKIFK---ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLASDWEEV--RPDMV  193 (374)
Q Consensus       119 e~~l~---~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~--~~d~~  193 (374)
                      ++.+.   .+++++++|++||+++.+|.+.++++++++|.++|++||++||+||+++||+|+|..+.++++++  .||++
T Consensus       236 ~~~~~~~~~~~~~iAavivEPi~g~~G~~~~~~~fl~~lr~lc~~~gillI~DEV~tG~gRtG~~~~~e~~gi~~~PDiv  315 (461)
T d1ohwa_         236 EDLIVKYRKKKKTVAGIIVEPIQSEGGDNHASDDFFRKLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVM  315 (461)
T ss_dssp             HHHHHHHHHTTCCEEEEEECSSBCTTTCBCCCHHHHHHHHHHHHHTTCEEEEECTTTCSSTTSSSSGGGGGCCSSCCSEE
T ss_pred             HHHHHHHHhCCCccceeeeccccccccccCchhhHHHHHHHHHHhhCcceeccccccccccccccccccccccccCchhh
Confidence            55544   45678999999999999999999999999999999999999999999999999999999999887  59999


Q ss_pred             EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCC
Q 017259          194 ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFP  273 (374)
Q Consensus       194 s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  273 (374)
                      +++|++++|. .    ... ..+.......+..||.+++++++++.++|+.++++++.+++++..+++.++|+++...+|
T Consensus       316 ~~gK~l~~g~-~----~~~-~~~~~~~~~~~~~T~~g~p~~~aaa~a~l~~i~~~~l~~~~~~~g~~l~~~l~~l~~~~~  389 (461)
T d1ohwa_         316 TFSKKMMTGG-F----FHK-EEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQARYP  389 (461)
T ss_dssp             EECGGGSSEE-E----EEC-GGGSCSSTTSSCCSCSSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred             hhhhcccccc-c----ccc-cccccccccccccccccccccchhhcccchhhhhhhHHHHHHHHHHHHHHHHHHHHhhCC
Confidence            9999999766 2    222 222333445678899999999999999999999999999999999999999999988877


Q ss_pred             CceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          274 NYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       274 ~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .++.++++.|+++.+++++..   ...++++.|+++|+++.+.+++.||+.|+++.|++|+++++++|.+++.
T Consensus       390 ~~i~~vrG~Gl~~~ie~~~~~---~~~~i~~~~~~~Gll~~~~~~~~ir~~PpL~it~~eid~~~~~l~~~l~  459 (461)
T d1ohwa_         390 QFISRVRGRGTFCSFDTPDES---IRNKLISIARNKGVMLGGCGDKSIRFRPTLVFRDHHAHLFLNIFSDILA  459 (461)
T ss_dssp             TTCEEEEEETTEEEEECSSHH---HHHHHHHHHHHTTEECEEETTTEEECCCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             CceEEeeeeeEEEEEEcCCHH---HHHHHHHHHHHCCeEEeeCCCCEEEEeCCcCCCHHHHHHHHHHHHHHHh
Confidence            678899999999999997653   6778999999999999998889999999999999999999999999997

>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermus thermophilus [TaxId: 274]

Probab=99.97  E-value=4.1e-31  Score=245.31  Aligned_cols=312  Identities=13%  Similarity=0.123  Sum_probs=210.2

Q ss_pred             hHHHHHHHhcccc--CcCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            2 KALQEQAEKLTLS--SRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~~--~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      +|+.++++.....  .+.+..++++.+++++.+..    ..+++++|+|+++|+..+++.+     .++|     |.|++
T Consensus        51 ~a~~~~~~~~~~~Y~~~~G~~~lR~~ia~~~~~~~~~~~~~~~i~it~G~~~al~~~~~~l-----~~~g-----d~vl~  120 (382)
T d1b5pa_          51 EAARRALAQGKTKYAPPAGIPELREALAEKFRRENGLSVTPEETIVTVGGSQALFNLFQAI-----LDPG-----DEVIV  120 (382)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHTTCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEE
T ss_pred             HHHHHHHhcCCcCCCCCCCCHHHHHHHHhhhhhhcccccccccceecCCHHHHHHHHHHHh-----CCCC-----CEEEE
Confidence            4566666653322  12233445556666665544    3468999999999999999988     6677     99999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      ..|+|.++...+...+.......    ..... . -..|++++++.++   ++++++++++++||+|.+. +++.+++|.
T Consensus       121 ~~P~y~~~~~~~~~~g~~~~~v~----~~~~~-~-~~~d~~~l~~~~~---~~~~~i~~~~P~NPTG~~~-s~~~~~~l~  190 (382)
T d1b5pa_         121 LSPYWVSYPEMVRFAGGVVVEVE----TLPEE-G-FVPDPERVRRAIT---PRTKALVVNSPNNPTGAVY-PKEVLEALA  190 (382)
T ss_dssp             EESCCTHHHHHHHHTTCEEEEEE----CCGGG-T-TCCCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHH
T ss_pred             CCCCcHHHHHHHHHhcCeEEEEe----ccccc-c-cCCCHHHHHHhCC---CCCeEEEECCCCCCcchhC-CHHHHHHHH
Confidence            99999887665554443211110    00000 0 0127888877665   6788999988899999877 899999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGN  231 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~  231 (374)
                      ++|++||++||+||+|+++.+.+........ ....   +.|+||.++ +|+ |+||+++++++++.+.........+.+
T Consensus       191 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~-~~~~~i~~~s~SK~~~~~Gl-R~G~~~~~~~~i~~~~~~~~~~~~~~~  268 (382)
T d1b5pa_         191 RLAVEHDFYLVSDEIYEHLLYEGEHFSPGRV-APEHTLTVNGAAKAFAMTGW-RIGYACGPKEVIKAMASVSRQSTTSPD  268 (382)
T ss_dssp             HHHHHTTCEEEEECTTTTCBSSSCCCCGGGT-CTTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTCSCC
T ss_pred             HHHHHcCeEEEEEccccceecCCCCCCHHHc-CCCCEEEEecchhhccCcHh-heEEEEECHHHHHHHHHHHHhcccCcc
Confidence            9999999999999999987666654332211 1112   348999998 899 999999999988877654444556667


Q ss_pred             HHHHHHHHHHHHHHh-hhcH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          232 PLASAVAIASLDVIR-DEKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       232 ~~~~~aa~~al~~~~-~~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+.+.++..++.... .+.+    .+.++.+.+.+.+.++..     ++....+..|.++|++++...  .+..++.+.|
T Consensus       269 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----g~~~~~p~gg~~~~~~~~~~~--~~~~~~~~~l  341 (382)
T d1b5pa_         269 TIAQWATLEALTNQEASRAFVEMAREAYRRRRDLLLEGLTAL-----GLKAVRPSGAFYVLMDTSPIA--PDEVRAAERL  341 (382)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----TCCBCCCSBTTEEEEECTTTC--SSHHHHHHHH
T ss_pred             cccccccccccccccchhHHHHHHHHHHHhhhhHHHHHHhhc-----CCeEecCCceEEEeEeCCCCC--CCHHHHHHHH
Confidence            777666555543221 1222    333344444444444433     222222334677787774321  1678899999


Q ss_pred             HHCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          307 KERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       307 ~~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .++||.+.|+    ..+++||++  ..+++++++++++|+++
T Consensus       342 ~e~gV~v~PG~~F~~~~~iRis~--~~~~e~l~~al~rl~~~  381 (382)
T d1b5pa_         342 LEAGVAVVPGTDFAAFGHVRLSY--ATSEENLRKALERFARV  381 (382)
T ss_dssp             HHTTEECEESGGGTCTTEEEEEC--CSCHHHHHHHHHHGGGG
T ss_pred             HHCCEEEEeCcccCCCCeEEEEE--cCCHHHHHHHHHHHHHh
Confidence            9999999986    368999994  56889999999998765

>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Archaeon Pyrococcus horikoshii [TaxId: 53953]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Archaeon Pyrococcus horikoshii [TaxId: 53953]

Probab=99.97  E-value=1e-30  Score=243.22  Aligned_cols=321  Identities=12%  Similarity=0.084  Sum_probs=212.7

Q ss_pred             hHHHHHHHhccc-cCc-CCCCCcHHHHHHHHhccc-----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTL-SSR-AFYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~~-~~~~~~~~~l~~~l~~~~-----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +++.++++++.. +.+ .+..++++.+++++.+..     ..+++++|+|+++++..++.++     ..+|     |+|+
T Consensus        45 ~~~~~a~~~~~~~Y~~~~G~~~lr~aia~~~~~~~~~~~~~~~~i~~t~G~~~~l~~~~~~l-----~~~g-----d~vl  114 (388)
T d1gdea_          45 EYAKEALDKGLTHYGPNIGLLELREAIAEKLKKQNGIEADPKTEIMVLLGANQAFLMGLSAF-----LKDG-----EEVL  114 (388)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCTTTSEEEESSTTHHHHHHHTTT-----CCTT-----CEEE
T ss_pred             HHHHHHHhcCccCCCCCcCCHHHHHHHHHHHHhhccccCCChheeeeccCcchHHHHHHHHh-----cCCC-----CEEE
Confidence            456666655332 221 233344555555555422     3457999999999999998877     6677     9999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      +..|+|.++...+...+.......    ...+.. . -.|+++|++.++   ++++++++++++||+|.+. +++.+++|
T Consensus       115 v~~P~y~~~~~~~~~~g~~~~~~~----~~~~~~-~-~~d~~~l~~~~~---~~~~~i~~~~P~NPtG~~~-s~~~~~~l  184 (388)
T d1gdea_         115 IPTPAFVSYAPAVILAGGKPVEVP----TYEEDE-F-RLNVDELKKYVT---DKTRALIINSPCNPTGAVL-TKKDLEEI  184 (388)
T ss_dssp             EEESCCTTHHHHHHHHTCEEEEEE----CCGGGT-T-CCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHH
T ss_pred             ECCCCcHHHHHHHHHcCCEEEEee----cccccC-C-CCCHHHHHHhCc---cCCeEEEECCCcCCCCCcC-CHHHHHHH
Confidence            999999887666655543322111    000000 0 027899988876   5789999999999999887 89999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCc-ccccC-CCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRML-ASDWE-EVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTF  228 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~-~~~~~-~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~  228 (374)
                      .++|++||++||+||+|+++...+... ..... +....   +.||||.++ +|+ |+||+++++++.+.+.........
T Consensus       185 ~~~a~~~~~~vi~De~y~~~~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~Gl-R~G~ii~~~~~~~~~~~~~~~~~~  263 (388)
T d1gdea_         185 ADFVVEHDLIVISDEVYEHFIYDDARHYSIASLDGMFERTITVNGFSKTFAMTGW-RLGFVAAPSWIIERMVKFQMYNAT  263 (388)
T ss_dssp             HHHHHHTTCEEEEECTTTTCBCTTCCCCCGGGSTTCGGGEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHcCCEEEEEcCChhhhhccCCCCChhhccCCCCeEEEEeCChhhccCccc-cEEEEEeeccchhhhhhccccccc
Confidence            999999999999999999875544322 22212 22222   338999998 799 999999999888877765555666


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-
Q 017259          229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-  307 (374)
                      ..+.+.+.++..+++........+..++..++.+..+.+..... ......+..|.|+|+.+++..  .+..++++.|+ 
T Consensus       264 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~p~gg~fl~~~l~~~~--~~~~~~~~~ll~  340 (388)
T d1gdea_         264 CPVTFIQYAAAKALKDERSWKAVEEMRKEYDRRRKLVWKRLNEM-GLPTVKPKGAFYIFPRIRDTG--LTSKKFSELMLK  340 (388)
T ss_dssp             SCCHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHHHT-TCCCCCCCBTTEECCBCGGGT--CCHHHHHHHHHH
T ss_pred             cccccchhhHHHHHhhccchhHHHHHHHHHHHhhhhhhhhhhhc-cccccCCCceEEEEEECCCCC--CCHHHHHHHHHH
Confidence            77778877777666432222222223232223333333332222 122222334667777775421  26788998876 


Q ss_pred             HCCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 ERGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 ~~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +.||.+.|+      .++++||++  ..+++++++++++|+++++ +.
T Consensus       341 e~gV~v~PG~~F~~~~~~~iRis~--~~~~e~l~~al~rL~~~l~-e~  385 (388)
T d1gdea_         341 EARVAVVPGSAFGKAGEGYVRISY--ATAYEKLEEAMDRMERVLK-ER  385 (388)
T ss_dssp             HTCEECEEGGGGCGGGTTBEEEEC--CSCHHHHHHHHHHHHHHHH-HT
T ss_pred             hCCEEEEechhhCCCCCCEEEEEe--cCCHHHHHHHHHHHHHHHH-hc
Confidence            569999875      268999994  4688999999999999998 64

>d1j32a_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Phormidium lapideum [TaxId: 32060]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Phormidium lapideum [TaxId: 32060]

Probab=99.97  E-value=4.5e-30  Score=238.59  Aligned_cols=315  Identities=14%  Similarity=0.129  Sum_probs=211.9

Q ss_pred             hHHHHHHHhccccC--cCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            2 KALQEQAEKLTLSS--RAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~~~--~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      +|++++++.....+  +.+..++++.+++++.+..    ..+++++|+|+++++..+++++     ..+|     |.|++
T Consensus        50 ~a~~~~~~~~~~~Y~~~~G~~~lR~aia~~~~~~~g~~~~~~~i~it~G~~~al~~~~~~~-----~~~g-----d~Vlv  119 (388)
T d1j32a_          50 EAAKAALEQGKTRYGPAAGEPRLREAIAQKLQRDNGLCYGADNILVTNGGKQSIFNLMLAM-----IEPG-----DEVII  119 (388)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEE
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHHHHHhcccCCCCceEEEcCCHHHHHHHHHHHH-----hCCC-----CEEEE
Confidence            46666666543222  2233445556666666544    3468999999999999999888     6778     99999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      ++|+|.++........+.....    +...+.   .+ .|+++++++++   ++++++++++++||+|.+. +++.+++|
T Consensus       120 ~~P~y~~~~~~~~~~~~~~v~~----~~~~~~---~~~~d~~~l~~~~~---~~~~~~~~~~P~NPTG~~~-~~~~~~~l  188 (388)
T d1j32a_         120 PAPFWVSYPEMVKLAEGTPVIL----PTTVET---QFKVSPEQIRQAIT---PKTKLLVFNTPSNPTGMVY-TPDEVRAI  188 (388)
T ss_dssp             ESSCCTHHHHHHHHTTCEEEEE----CCCGGG---TTCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHH
T ss_pred             cCCCcHHHHHHHHHhcCeEEEE----eccccc---ccCCCHHHHHHhCC---CCCeEEEECCCCCCCCccc-chhhhhhh
Confidence            9999987765554443322111    000000   01 27899988876   5788888888899999887 89999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCccc-ccC-----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLAS-DWE-----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGST  227 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~-~~~-----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~  227 (374)
                      .++|++||++||+||+|..+.+.+..+.. ...     +...-+.||||.++ +|+ |+||+++++++++.+........
T Consensus       189 ~~~~~~~~~~iI~De~Y~~~~~~~~~~~s~~~~~~~~~~~~i~~~S~SK~~~~~Gl-RvG~~~~~~~~~~~~~~~~~~~~  267 (388)
T d1j32a_         189 AQVAVEAGLWVLSDEIYEKILYDDAQHLSIGAASPEAYERSVVCSGFAKTYAMTGW-RVGFLAGPVPLVKAATKIQGHST  267 (388)
T ss_dssp             HHHHHHHTCEEEEECTTTTCBCTTCCCCCGGGSCHHHHHTEEEEEESTTTTTCTTT-CCEEEECCHHHHHHHHHHHHTTT
T ss_pred             hcccccCCeEEEchhhhhcccccCCCCCCHHHhCcccccceeEecCChhhhhcchh-HeEEEEECHHHHHHHHHhhhhcc
Confidence            99999999999999999876555433221 111     01112348999998 799 99999999998887765444455


Q ss_pred             CCCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          228 FGGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      .+.+.+++.++...+....+  ++.++.++++.+.+.+.|+    .+++.....+..|.++|+.++...  .+..++++.
T Consensus       268 ~~~~~~~q~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~~g~~~~~p~gg~~l~~~l~~~~--~~~~~~~~~  341 (388)
T d1j32a_         268 SNVCTFAQYGAIAAYENSQDCVQEMLAAFAERRRYMLDALN----AMPGLECPKPDGAFYMFPSIAKTG--RSSLDFCSE  341 (388)
T ss_dssp             CSCCHHHHHHHHHHHHSCSHHHHHHHHHHHHHHHHHHHHHH----TCTTCBCCCCCBTTEECCBCGGGT--CCHHHHHHH
T ss_pred             ccccHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHHHHH----hCCCCEecCCCceEEEEEECCCCC--CCHHHHHHH
Confidence            67788888877766653211  1223333344444444443    332222222334566776665421  156788888


Q ss_pred             HH-HCCeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MK-ERGILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~-~~Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+ ++||.+.|+    .++++|+++  ..+++++++++++|+++++
T Consensus       342 ll~~~gV~v~pG~~F~~~~~~Rls~--~~~~e~l~~al~rl~~~l~  385 (388)
T d1j32a_         342 LLDQHQVATVPGAAFGADDCIRLSY--ATDLDTIKRGMERLEKFLH  385 (388)
T ss_dssp             HHHHHCEECEEGGGGTCTTBEEEEC--CSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEeccccCCCCeEEEEE--eCCHHHHHHHHHHHHHHHH
Confidence            76 459999886    478999995  4688999999999999987

>d1fc4a_ c.67.1.4 (A:) 2-amino-3-ketobutyrate CoA ligase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 2-amino-3-ketobutyrate CoA ligase
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=5.1e-29  Score=231.37  Aligned_cols=308  Identities=18%  Similarity=0.229  Sum_probs=226.1

Q ss_pred             hHHHHHHHhccccC--cC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLSS--RA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~~--~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++.....  ++   +..+.+++++++|++++|.+.+++++||++|+..+++.+     ..++     |.|+..
T Consensus        66 ~a~~~a~~~~g~~~~~sr~~~g~~~~~~~lE~~lA~~~g~e~al~~~SG~~An~~~i~~l-----~~~~-----d~i~~d  135 (401)
T d1fc4a_          66 AAAKAGMDSHGFGMASVRFICGTQDSHKELEQKLAAFLGMEDAILYSSCFDANGGLFETL-----LGAE-----DAIISD  135 (401)
T ss_dssp             HHHHHHHHHHCSCCCSCHHHHCCBHHHHHHHHHHHHHHTCSEEEEESCHHHHHHTTHHHH-----CCTT-----CEEEEE
T ss_pred             HHHHHHHHHhCCCcccceeeccCcHHHHHHHHHHHHhhcCCceEEecchhhhhHHHHHHh-----cCCC-----cEEEeC
Confidence            67778887743322  11   457888899999999999999999999999999999988     4555     888887


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKA  153 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~  153 (374)
                      ..++++...+.. ...            .++..++++|.+++++.++.   ++..++++++++++++.|.+.|    +++
T Consensus       136 ~~~h~s~~~G~~-~~~------------a~~~~~~~~d~~~le~~~~~~~~~~~~~~liv~egv~s~~G~~~~----L~~  198 (401)
T d1fc4a_         136 ALNHASIIDGVR-LCK------------AKRYRYANNDMQELEARLKEAREAGARHVLIATDGVFSMDGVIAN----LKG  198 (401)
T ss_dssp             TTCCHHHHHHHH-TSC------------SEEEEECTTCHHHHHHHHHHHHHTTCSSEEEEEESEETTTTEECC----HHH
T ss_pred             CcchHHHHcccc-ccC------------ceEEEEcCCChHHHHHHHHHhhhcccCceEEEEcCCCCCCCchhh----hhH
Confidence            777554433322 221            33455667788888776653   4466789999999999999998    999


Q ss_pred             HHHHHHhcCCEEEEeccccC--CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC--
Q 017259          154 VRDLCSKYNILMIADEIQSG--LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG--  225 (374)
Q Consensus       154 l~~l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~--  225 (374)
                      |.++|++||+++|+||+|+.  ++..|.. ....++.  .+|++  |+||+++ |. ++|++.+++++++.++.....  
T Consensus       199 l~~L~~~~~a~LivDeah~~g~~g~~G~G-~~~~~~~~~~~dii~~tl~Ka~g-g~-~Gg~v~g~~~~~~~l~~~~~~~~  275 (401)
T d1fc4a_         199 VCDLADKYDALVMVDDSHAVGFVGENGRG-SHEYCDVMGRVDIITGTLGKALG-GA-SGGYTAARKEVVEWLRQRSRPYL  275 (401)
T ss_dssp             HHHHHHHTTEEEEEECTTTTTTSSTTSCC-HHHHTTCTTCCSEEEEESSSTTC-SS-SCEEEEECHHHHHHHHHHCHHHH
T ss_pred             HHHHHhhcCcEEEehhhhccccccCCCCc-cchhccCCCCCeEEEeecccccc-cC-CcccccCCHHHHHHHHcCChhhh
Confidence            99999999999999999994  3434443 2333333  34554  8999996 44 567788999998887643222  


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhh-cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          226 STFGGNPLASAVAIASLDVIRDE-KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      .+-+.++...+++..+++.+... +++++++++.+++++.+.......      ....+.++.+.+.+..   ...++++
T Consensus       276 ~s~~l~p~~~~aa~~~l~~~~~~~~~~~~l~~~~~~~~~~l~~~g~~~------~~~~~pIv~v~~~~~~---~a~~~~~  346 (401)
T d1fc4a_         276 FSNSLAPAIVAASIKVLEMVEAGSELRDRLWANARQFREQMSAAGFTL------AGADHAIIPVMLGDAV---VAQKFAR  346 (401)
T ss_dssp             HSCCCCHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCCB------CCSSSSEEEEEEECHH---HHHHHHH
T ss_pred             hcCCCCHHHHHHHHhhhcccccCHHHHHHHHHHHHHHHhhhcccCCcc------CCCCCCEEEEEECCHH---HHHHHHH
Confidence            23355777778888888876553 678888888898988887764221      1123344555554432   5678999


Q ss_pred             HHHHCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          305 KMKERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       305 ~l~~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .|+++||++.+.       +...+|++++..+|++|+++++++|+++.+ ++
T Consensus       347 ~L~~~Gi~v~~i~~PtVp~g~~~lRi~~~a~hT~edId~~v~al~ev~~-~l  397 (401)
T d1fc4a_         347 ELQKEGIYVTGFFYPVVPKGQARIRTQMSAAHTPEQITRAVEAFTRIGK-QL  397 (401)
T ss_dssp             HHHHTTEECCEECTTSSCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred             HHHHCCceEEeECCCCCCCCCceEEEEECCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            999999998642       345699999999999999999999999998 65

>d2r5ea1 c.67.1.1 (A:12-429) Kynurenine--oxoglutarate transaminase I {Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Yellowfever mosquito (Aedes aegypti) [TaxId: 7159]

Probab=99.96  E-value=2.9e-28  Score=228.57  Aligned_cols=310  Identities=13%  Similarity=0.131  Sum_probs=210.3

Q ss_pred             CCCCcHHHHHHHHhcccC-----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFG-----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~-----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++.+.+|     .++|++|+|+++|+..++..+     ..+|     |.|++.+|+|+.+.......+.
T Consensus        67 G~~~lReaiA~~~~~~~g~~~~p~~~I~it~G~~~al~~~~~~l-----~~~g-----d~vlv~~P~y~~~~~~~~~~g~  136 (418)
T d2r5ea1          67 GHPRLVQALSKLYSQLVDRTINPMTEVLVTVGAYEALYATIQGH-----VDEG-----DEVIIIEPFFDCYEPMVKAAGG  136 (418)
T ss_dssp             CCHHHHHHHHHHHHHHHTSCCCTTTSEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCccceEEEcCCCchhhhhhhhhc-----cccc-----cceeccccccchhhHHHHHcCC
Confidence            334556667777776542     368999999999999999998     6777     9999999999887666555543


Q ss_pred             CccccccCCCCCCCc--eecc-CCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           93 DNEAIRGFGPLLPGH--LKVD-FGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~--~~~~-~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      ...... ..+.....  .... ..+.+++++...   +.++++++++++||+|.+. +++.+++|+++|++||++||+||
T Consensus       137 ~~~~v~-~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~i~~p~NPtG~~~-s~e~~~~l~~~a~~~~~~iI~De  211 (418)
T d2r5ea1         137 IPRFIP-LKPNKTGGTISSADWVLDNNELEALFN---EKTKMIIINTPHNPLGKVM-DRAELEVVANLCKKWNVLCVSDE  211 (418)
T ss_dssp             EEEEEE-CEESCCSSCEEGGGEECCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEC
T ss_pred             eEEEEE-ecccccccchhhhhhhhhHHHHhhhhh---ccccceecCCcCccccccc-cHHHHHHHhhhhhcCCeeeeccc
Confidence            322111 00000000  0000 125666655443   6899999999999999888 89999999999999999999999


Q ss_pred             cccCCcccccCc-cc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHH
Q 017259          170 IQSGLARSGRML-AS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       170 a~~~~~~~g~~~-~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +|..+.+.+... .. ...+....   +.|+||.++ +|+ |+||+++++++++.+.......+++.+.+.+.++...+.
T Consensus       212 ~y~~~~~~~~~~~s~~~~~~~~~~~i~~~S~SK~~~~pGl-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~q~a~~~~l~  290 (418)
T d2r5ea1         212 VYEHMVFEPFEHIRICTLPGMWERTITIGSAGKTFSLTGW-KIGWAYGPEALLKNLQMVHQNCVYTCATPIQEAIAVGFE  290 (418)
T ss_dssp             TTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG-CCEEEESCHHHHHHHHHHHTTTTCSCCHHHHHHHHHHHH
T ss_pred             chhhhccCCCccccccccccccceeeeeecCCccccCCCc-ccccccccchhhhhhhhcccccccccccchhhhcccccc
Confidence            999775544321 11 22222233   338999998 799 999999999998888765556677778888877766654


Q ss_pred             HHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---------chhHHHHHHHHHHC
Q 017259          244 VIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---------PVSAYDICLKMKER  309 (374)
Q Consensus       244 ~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---------~~~~~~~~~~l~~~  309 (374)
                      ....     +++.+++++..+..++.+.+....+ ++....+..|.|+|++++....         ..+..++++.|+++
T Consensus       291 ~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  369 (418)
T d2r5ea1         291 TELKRLKSPECYFNSISGELMAKRDYMASFLAEV-GMNPTVPQGGYFMVADWSSLDSKVDLTQETDARKDYRFTKWMTKS  369 (418)
T ss_dssp             HHHTTTTSTTSHHHHHHHHHHHHHHHHHHHHHHT-TCEEEECSBSSEEEEECGGGSTTCCGGGCCCSSHHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHHHHhhhhHHhhHhhc-CCcccCCCceeEEEEEcccccccccchhcccccCHHHHHHHHHHH
Confidence            3211     2445555544444444444444333 3433334446777877753110         13577899988765


Q ss_pred             -CeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          310 -GILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       310 -Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                       ||.+.|+.           .+++||++  ..+++++++++++|++.+.
T Consensus       370 ~gV~v~PG~~F~~~~~~~~g~~~iRis~--~~~~e~l~~a~~rl~~~lg  416 (418)
T d2r5ea1         370 VGLQGIPPSAFYSEPNKHLGEDFVRYCF--FKKDENLQKAAEILRKWKG  416 (418)
T ss_dssp             HSEECBCGGGGSCGGGHHHHTTEEEEEC--CSCHHHHHHHHHHHHHHHT
T ss_pred             CCEEEeCchhhCCCCCccCCCCEEEEEe--cCCHHHHHHHHHHHHHHHc
Confidence             99998852           47899994  5689999999999998875

>d1c7na_ c.67.1.3 (A:) Cystalysin {Treponema denticola [TaxId: 158]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystalysin
species: Treponema denticola [TaxId: 158]

Probab=99.96  E-value=1.3e-28  Score=229.26  Aligned_cols=322  Identities=13%  Similarity=0.105  Sum_probs=202.7

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEec
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCC   77 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~   77 (374)
                      +|+.++++.+.+.++.+..++++.+++++.+.+    ..++|++|+|+++++..+++++     .++|     |.|++.+
T Consensus        51 ~al~~~~~~~~~~Y~~g~~~Lr~aia~~~~~~~g~~~~~~~I~vt~G~~~al~~~~~~~-----~~pg-----d~vi~~~  120 (394)
T d1c7na_          51 EGLKKYLDETVLGYTGPTEEYKKTVKKWMKDRHQWDIQTDWIINTAGVVPAVFNAVREF-----TKPG-----DGVIIIT  120 (394)
T ss_dssp             HHHHHHHHHCCCSSBCCCHHHHHHHHHHHHHHHCCCCCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECS
T ss_pred             HHHHHHHhCCCcCCCCCCHHHHHHHHHHHHHhcCCCCCCcceEeeccchhhhhhhhccc-----cccc-----ccccccc
Confidence            567777766544333333445555666665543    3468999999999999999988     6778     9999999


Q ss_pred             cCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHH
Q 017259           78 GCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDL  157 (374)
Q Consensus        78 ~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l  157 (374)
                      |.|.+........+.......   ....+...  ..|.+.++..+..  ++++++++++++||||.+. +++.+++|+++
T Consensus       121 p~~~~~~~~~~~~g~~~v~~~---~~~~~~~~--~~d~~~~~~~~~~--~~~~~i~l~~P~NPTG~v~-s~~~l~~l~~~  192 (394)
T d1c7na_         121 PVYYPFFMAIKNQERKIIECE---LLEKDGYY--TIDFQKLEKLSKD--KNNKALLFCSPHNPVGRVW-KKDELQKIKDI  192 (394)
T ss_dssp             SCCTHHHHHHHTTTCEEEECC---CEEETTEE--ECCHHHHHHHHTC--TTEEEEEEESSBTTTTBCC-CHHHHHHHHHH
T ss_pred             CcccchhhHHhhhhhcccccc---cccccccc--cchhhhhhhhhcc--ccceEEEecccccccceec-cHHHhhhhhcc
Confidence            999776555544443221110   00000000  0266777766542  4799999999999999888 89999999999


Q ss_pred             HHhcCCEEEEeccccCCcccccCccc-ccC--C---CCCcEEEeccccc-CCccchhhheeC-HHHHhhcCCCCCCCCC-
Q 017259          158 CSKYNILMIADEIQSGLARSGRMLAS-DWE--E---VRPDMVILGKALG-GGVIPVSAVLAD-KEVMLCIQPGEHGSTF-  228 (374)
Q Consensus       158 ~~~~~i~li~Dea~~~~~~~g~~~~~-~~~--~---~~~d~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~~~~~~~-  228 (374)
                      |++||++||+||+|.++.+.+..... ...  +   ....+.|+||.++ +|+ |+||++++ +.+.+.+......... 
T Consensus       193 a~~~~~~ii~De~Y~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-R~g~~~~~~~~i~~~~~~~~~~~~~~  271 (394)
T d1c7na_         193 VLKSDLMLWSDEIHFDLIMPGYEHTVFQSIDEQLADKTITFTAPSKTFNIAGM-GMSNIIIKNPDIRERFTKSRDATSGM  271 (394)
T ss_dssp             HHHSSCEEEEECTTTTCBCTTCCCCCGGGSCHHHHTTEEEEECSHHHHTCGGG-CCEEEECCCHHHHHHHHHHHHHTTCC
T ss_pred             ccccceeEeccccccccccCCccccchhhhhcccccceeeccccccccccccc-ccccccccChhhhhhhhhhhhhcccc
Confidence            99999999999999987554432221 111  1   1112348899998 799 99997765 4555555432111222 


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.....++++......  .+++.+..++..++.++.+.+.... .+++....+..+.++|++++...  .+..+++++|+
T Consensus       272 ~~~~~~~~a~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~p~g~~~~~~~~~~~~--~~~~~~~~~Ll  347 (394)
T d1c7na_         272 PFTTLGYKACEICYKE--CGKWLDGCIKVIDKNQRIVKDFFEVNHPEIKAPLIEGTYLQWIDFRALK--MDHKAMEEFMI  347 (394)
T ss_dssp             CCCHHHHHHHHHHHHH--CHHHHHHHHHHHHHHHHHHHHHHHHHCTTSBCCCCSBSSEEEEECGGGC--CCHHHHHHHHH
T ss_pred             ccccccchhhhhhhcc--hhhhhcccccccchhhhhhhhhhhccccceeecCCCceeEEEEECCCCC--CCHHHHHHHHH
Confidence            2233333333333222  2233444444444444444443321 22222222233566777776421  26889999998


Q ss_pred             HC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          308 ER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       308 ~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ++ ||.+.|+      +.+++||+  +..+++++++++++|+++++ ++
T Consensus       348 ~~~gV~v~pG~~Fg~~~~~~iRis--~~~~~e~i~eal~rl~~~l~-~L  393 (394)
T d1c7na_         348 HKAQIFFDEGYIFGDGGIGFERIN--LAAPSSVIQESLERLNKALK-DL  393 (394)
T ss_dssp             HTTCCCCEEGGGGCGGGTTEEEEE--CCSCHHHHHHHHHHHHHHHH-HH
T ss_pred             HhCCEEEEcchhhCCCCCCEEEEE--EeCCHHHHHHHHHHHHHHHH-hc
Confidence            76 9999875      26799999  45688999999999999998 65

>d1wsta1 c.67.1.1 (A:13-415) Multiple substrate aminotransferase, MSAT {Thermococcus profundus [TaxId: 49899]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Multiple substrate aminotransferase, MSAT
species: Thermococcus profundus [TaxId: 49899]

Probab=99.96  E-value=1.1e-28  Score=230.48  Aligned_cols=298  Identities=13%  Similarity=0.152  Sum_probs=202.0

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+.+    ..+++++|+|+++++..++.++     ..+|     |.|++.+|+|..+.......+..
T Consensus        72 G~~~lR~aia~~l~~~~g~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----d~v~~~~P~y~~~~~~~~~~g~~  141 (403)
T d1wsta1          72 GFTPLRLALARWMEKRYDIPMSKVEIMTVAGSQQALDLIGRVF-----LNPG-----DPIVVEAPTYLAAIQAFKYYDPE  141 (403)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCCTTCEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTCCE
T ss_pred             CCHHHHHHHHHHHHHHhCCCCChHHeeecccchHHHHHHHHHH-----hhcC-----CccccCCCcchhhhHHHhhcccc
Confidence            44445556666666543    5679999999999999999988     6677     99999999997776655544322


Q ss_pred             ccccccCCCCCCCceeccCC----CHH----HHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEE
Q 017259           94 NEAIRGFGPLLPGHLKVDFG----DIT----ALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILM  165 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~----d~~----~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~l  165 (374)
                                   +..++.+    +..    ..++...+..+.+.++++.+++||+|.+. +.+.+++|.++|++||++|
T Consensus       142 -------------~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~-s~~~l~~i~~~a~~~~~~l  207 (403)
T d1wsta1         142 -------------FISIPLDDKGMRVDLLEEKLEELRKQGKRVKIVYTVSTFQNPAGVTM-SVDRRKKLLELANEYDFLI  207 (403)
T ss_dssp             -------------EEEEEEETTEECHHHHHHHHHHHHHTTCCCCEEEECCSSCTTTCCCC-CHHHHHHHHHHHHHTTCEE
T ss_pred             -------------ceeEeecccCCccccccccchhhhhccccccccccccccCCCCCccC-CHHHHHHHHHHHHhcCcee
Confidence                         2222221    222    22233333334566777777888888777 8999999999999999999


Q ss_pred             EEeccccCCcccccCccc-ccC---CCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          166 IADEIQSGLARSGRMLAS-DWE---EVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       166 i~Dea~~~~~~~g~~~~~-~~~---~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      |+||+|.++.+.+..... ...   +....+.|+||.+++|+ |+||+++++++++.+...........+...+.+..+.
T Consensus       208 i~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~G~-RiG~~i~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~  286 (403)
T d1wsta1         208 VEDGPYSELRYSGEPTPPIKHFDDYGRVIYLGTFSKILAPGF-RIGWVAAHPHLIRKMEIAKQSIDLCTNTFGQAIAWKY  286 (403)
T ss_dssp             EEECTTTTCBCSSCCCCCGGGGCSSSCEEEEEESTTTTCGGG-CCEEEEECHHHHHHHHHHHHHHHSSCCHHHHHHHHHH
T ss_pred             ccccchhheecCCCCCCcccccCCCCcEEEEccccceecCcc-cccccccchHHHHHHHHHHhhhccccccchhhhHHhh
Confidence            999999987666543322 111   11122448999998899 9999999999888776543344455666666665555


Q ss_pred             HHHHhhhcHHHHHHH----HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC-
Q 017259          242 LDVIRDEKLAERSAH----LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT-  316 (374)
Q Consensus       242 l~~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~-  316 (374)
                      +.....+.+.+++++    +.+.+.+.|.+....  ++....+..|.++|+.++...   +...+++.|.++||.+.|+ 
T Consensus       287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~--~~~~~~p~gg~~~~~~~~~~~---~~~~~~~~l~~~gV~v~pg~  361 (403)
T d1wsta1         287 VENGYLDEHIPKIIEFYKPRRDAMLEALEEYMPE--GVEWTKPEGGMFVRVTLPEGI---DTKLMMERAVAKGVAYVPGE  361 (403)
T ss_dssp             HHTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCCT--TCEECCCSBSSEEEEECCTTC---CTTTTHHHHHHTTEECEEGG
T ss_pred             hhccccchhHHHHHHHHHHHHHHHHHHHHhhccC--CeEEeCCCceeEEEEECCCCC---CHHHHHHHHHHCCEEEEech
Confidence            543333333333333    333444434332111  122233445788888887654   6778999999999999875 


Q ss_pred             -------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          317 -------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       317 -------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                             ..+++||+++. .+++++++++++|+++++
T Consensus       362 ~f~~~~~~~~~iRi~~~~-~~~~~l~~al~rl~~~l~  397 (403)
T d1wsta1         362 AFFVHRDKKNTMRLNFTY-VPEETIREGVRRLAETIK  397 (403)
T ss_dssp             GGSTTCCCCSEEEEECSS-SCHHHHHHHHHHHHHHHH
T ss_pred             hhcCCCCCCCEEEEEecC-CCHHHHHHHHHHHHHHHH
Confidence                   25799999543 588999999999999987

>d1xi9a_ c.67.1.1 (A:) Putative alanine aminotransferase {Pyrococcus furiosus [TaxId: 2261]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative alanine aminotransferase
species: Pyrococcus furiosus [TaxId: 2261]

Probab=99.96  E-value=1.5e-28  Score=228.71  Aligned_cols=318  Identities=13%  Similarity=0.069  Sum_probs=204.6

Q ss_pred             hHHHHHHHhccc-cC-cCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE
Q 017259            2 KALQEQAEKLTL-SS-RAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS   75 (374)
Q Consensus         2 ~a~~~~~~~~~~-~~-~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~   75 (374)
                      +|+.++++...+ +. ..+..++++.+++++.+.+|    .+++++++|+++++..++.++     ..+|     |+|++
T Consensus        53 ~a~~~a~~~~~~~Y~~~~G~~~LR~aia~~~~~~~g~~~~~~~i~i~~G~~~~~~~~~~~~-----~~~G-----d~vlv  122 (395)
T d1xi9a_          53 EAYCKAIKEGHNYYGDSEGLPELRKAIVEREKRKNGVDITPDDVRVTAAVTEALQLIFGAL-----LDPG-----DEILV  122 (395)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEE
T ss_pred             HHHHHHHhcCCCCCCCCCCCHHHHHHHHHhhhhcccccccccccccccccchhhhhhhhhh-----cCCC-----CEEEE
Confidence            466666665432 22 22334455667777766544    458999999999999999888     6677     99999


Q ss_pred             eccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           76 CCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        76 ~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      .+|+|+.+...+...+...........  .+..    .|++++++.+.   ++++++++++++||+|.+. +++.+++|.
T Consensus       123 ~~P~y~~~~~~~~~~g~~~v~v~~~~~--~~~~----~d~~~~~~~~~---~~~~~v~l~~P~NPTG~~~-s~~~~~~l~  192 (395)
T d1xi9a_         123 PGPSYPPYTGLVKFYGGKPVEYRTIEE--EDWQ----PDIDDIRKKIT---DRTKAIAVINPNNPTGALY-DKKTLEEIL  192 (395)
T ss_dssp             EESCCHHHHHHHHHTTCEEEEEEEEGG--GTSE----ECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHH
T ss_pred             cCCccccchhhhhhcCCEEEEEecccc--cccc----chHHHHHHhhc---ccccEEEecCCCCCccchh-hHHHHHHHH
Confidence            999998776665555433221100000  0011    17888877765   5788999988999999877 899999999


Q ss_pred             HHHHhcCCEEEEeccccCCcccccCcccccCCCCCcE---EEeccccc-CCccchhhheeC--HHHHhhcCC---CCCCC
Q 017259          156 DLCSKYNILMIADEIQSGLARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLAD--KEVMLCIQP---GEHGS  226 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~--~~~~~~~~~---~~~~~  226 (374)
                      ++|++||++||.||+|.++.+.+.............+   .||||.++ +|+ |+||++..  ......+..   .....
T Consensus       193 ~~~~~~~~~ii~De~y~~~~~~~~~~~~~~~~~~~~vi~~~S~SK~~~~~Gl-RvG~~~~~~~~~~~~~~~~~~~~~~~~  271 (395)
T d1xi9a_         193 NIAGEYEIPVISDEIYDLMTYEGEHISPGSLTKDVPVIVMNGLSKVYFATGW-RLGYMYFVDPENKLSEVREAIDRLARI  271 (395)
T ss_dssp             HHHHHHTCCEEEECTTTTCBSSSCCCCHHHHCSSSCEEEEEESTTTTCCGGG-CCEEEEEECTTCTTHHHHHHHHHHHHH
T ss_pred             hhhhhcCeeEEeccccccccccccccchhhcCCCCCEEEEeCcchhcccchh-hcEeeEecCHHHHHHHHHHHHHHhhcC
Confidence            9999999999999999976554433222111112233   38999998 699 99997642  222222211   11123


Q ss_pred             CCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE-EEeeeEEEEeccCCCchhHHHHHHH
Q 017259          227 TFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVR-GRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       227 ~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~-~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      ..+.+.+++.++..++..  .+++.++.++..+..++.+.+....++ ...... ..|.++|++++.... .+..+++..
T Consensus       272 ~~~~~~~~q~a~~~~l~~--~~~~~~~~~~~~~~~~~~l~~~L~~~~-~~~~~~p~gg~~~~~~l~~~~~-~~~~~~~~~  347 (395)
T d1xi9a_         272 RLCPNTPAQFAAIAGLTG--PMDYLKEYMKKLKERRDYIYKRLNEIP-GISTTKPQGAFYIFPKIEVGPW-KNDKEFVLD  347 (395)
T ss_dssp             TCCSCSHHHHHHHHHHHS--CCHHHHHHHHHHHHHHHHHHHHHHTST-TEECCCCCBSSEECCEECSCSC-SSHHHHHHH
T ss_pred             CCCcCHHHHHHHHHHhcC--CHHHHHHHHHHHHHHHHHHHHHHHhCC-CceecCCCeeEEEeEECCCCCC-CCHHHHHHH
Confidence            445577788777776652  223444444333333344433333332 333233 346777877764311 145677777


Q ss_pred             HH-HCCeEeccCC------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          306 MK-ERGILAKPTH------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~-~~Gi~v~~~~------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |+ +.||.+.|+.      .+++||+  +..+++++++++++|+++++
T Consensus       348 ll~~~gV~v~PG~~Fg~~~~~~~Ris--~~~~~e~l~eal~rl~~~l~  393 (395)
T d1xi9a_         348 VLHNAHVLFVHGSGFGEYGAGHFRAV--FLPPIEILEEAMDRFEKFMK  393 (395)
T ss_dssp             HHHHHCEECEEGGGGCGGGTTBEEEE--CCSCHHHHHHHHHHHHHHHH
T ss_pred             HHHhCCEEEEcChhhCCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence            66 5699998852      6899999  45789999999999999997

>d1v2da_ c.67.1.1 (A:) Glutamine aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Glutamine aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.96  E-value=5.4e-28  Score=223.00  Aligned_cols=296  Identities=19%  Similarity=0.163  Sum_probs=203.6

Q ss_pred             CCcHHHHHHHHhcccC--CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           20 NDKFPVFAERLTSMFG--YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~--~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .....+|++.++++++  .+++++|+|+++++..++..+     ..+|     +.|++..|+|+.........+......
T Consensus        60 ~~G~~elr~aiA~~~~~~~~~Iiit~G~~~al~~~~~~l-----~~~~-----d~v~~~~p~~~~~~~~~~~~g~~~~~~  129 (368)
T d1v2da_          60 PAGLPALREALAEEFAVEPESVVVTSGATEALYVLLQSL-----VGPG-----DEVVVLEPFFDVYLPDAFLAGAKARLV  129 (368)
T ss_dssp             TTCCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEEEEE
T ss_pred             CcCCHHHHHHHHhhcccCCcceeeccchHHHHHHHhhcc-----cccc-----ccccccCCcchhhhhHHHhcCCcccee
Confidence            3446788888888775  458999999999999999988     5667     999999999987766555443322111


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      .    +........ .|++.++++++   +.++.+++.+++||+|.+. +.+.+++|+++|++||+++|+||+|..+...
T Consensus       130 ~----~~~~~~~~~-~d~~~l~~~~~---~~~~~i~~~~p~NPtG~~~-~~~~l~~l~~~a~~~~i~ii~D~~~~~~~~~  200 (368)
T d1v2da_         130 R----LDLTPEGFR-LDLSALEKALT---PRTRALLLNTPMNPTGLVF-GERELEAIARLARAHDLFLISDEVYDELYYG  200 (368)
T ss_dssp             E----CEEETTEEE-CCHHHHHTTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTTCBSS
T ss_pred             c----ccccccccc-CCHHHHHHhhc---cCceEEEEcCCCCcccccC-CHHHHHHHHHHHHHcCCeeeechhhhhhccc
Confidence            0    000000000 27888888876   5788888888899999877 8999999999999999999999999854333


Q ss_pred             ccCccccc--CCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHH
Q 017259          178 GRMLASDW--EEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERS  254 (374)
Q Consensus       178 g~~~~~~~--~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~  254 (374)
                      ........  .+....+.++||.++ +|+ |+||+++++++.+.+.........+.+.+.+.++.+++......++.+++
T Consensus       201 ~~~~~~~~~~~~~~~~~~~~sk~~~~~G~-R~g~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~l~~~~~~~~~~~~  279 (368)
T d1v2da_         201 ERPRRLREFAPERTFTVGSAGKRLEATGY-RVGWIVGPKEFMPRLAGMRQWTSFSAPTPLQAGVAEALKLARREGFYEAL  279 (368)
T ss_dssp             SCCCCHHHHCTTTEEEEEEHHHHTTCGGG-CCEEEECCTTTHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHHTTHHHHH
T ss_pred             ccccccccccccccceeeccccccccccc-ccccccccccccchhhhhhhccccccccccccccccccccccchhhHHHH
Confidence            22211111  111222458888777 588 99999999988877765545556777888888888887765555455554


Q ss_pred             HHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccC--------CCCEEEEecC
Q 017259          255 AHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPT--------HDTIVRLTPP  326 (374)
Q Consensus       255 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~--------~~~~lRi~~~  326 (374)
                      ++..+..++.+.+....+ ++....+..+.++|+.++..    +..   +.|.++||.++|+        ..+++||++ 
T Consensus       280 ~~~~~~~~~~l~~~l~~~-g~~~~~p~g~~~~~~~l~~~----~~~---~ll~~~gI~v~pg~~F~~~~~~~~~iRis~-  350 (368)
T d1v2da_         280 REGYRRRRDLLAGGLRAM-GLRVYVPEGTYFLMAELPGW----DAF---RLVEEARVALIPASAFYLEDPPKDLFRFAF-  350 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHT-TCCEECCSBSSEEEEECTTC----CHH---HHHHHTCEECEEGGGGCSSSCCTTEEEEEC-
T ss_pred             HHHHHHhhhhhhhhHHhc-CcEEecCCceeEEEEeCCcc----HHH---HHHHhCCEEEEechhhCCCCCCCCEEEEEe-
Confidence            444443334443333332 23322233467788887653    343   3466889999874        258999994 


Q ss_pred             CCCCHHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDVL  345 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~~  345 (374)
                       ..+++++++++++|++++
T Consensus       351 -~~~~e~i~~ai~rL~~~l  368 (368)
T d1v2da_         351 -CKTEEELHLALERLGRVV  368 (368)
T ss_dssp             -CSCHHHHHHHHHHHHHHC
T ss_pred             -cCCHHHHHHHHHHHHHhC
Confidence             568999999999998864

>d1vp4a_ c.67.1.1 (A:) Putative aminotransferase TM1131 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative aminotransferase TM1131
species: Thermotoga maritima [TaxId: 2336]

Probab=99.96  E-value=6.2e-29  Score=233.40  Aligned_cols=303  Identities=16%  Similarity=0.160  Sum_probs=209.9

Q ss_pred             CCCCcHHHHHHHHhccc-----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~-----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++.+.+     ..++|++|+|+++++..++.++     ..+|     |.|++.+|+|..+.......+.
T Consensus        81 G~~~LR~aia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~~-----~~~G-----d~Vlv~~P~y~~~~~~~~~~g~  150 (420)
T d1vp4a_          81 GDPVLKQQILKLLERMYGITGLDEDNLIFTVGSQQALDLIGKLF-----LDDE-----SYCVLDDPAYLGAINAFRQYLA  150 (420)
T ss_dssp             CCHHHHHHHHHHHHHHHCCCSCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCHHHHHHHHTTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCCHHHeEeccchhhhHHHHHHhh-----hccc-----cccccccccccchhHHHHHHhh
Confidence            44445566666666543     3458999999999999999888     6677     9999999999776555444332


Q ss_pred             CccccccCCCCCCCceeccCC----CHHHHHHHHHh------cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC
Q 017259           93 DNEAIRGFGPLLPGHLKVDFG----DITALEKIFKE------SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN  162 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~----d~~~le~~l~~------~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~  162 (374)
                      .             +..++.+    +++.++..+..      ..+.++++++.+++||+|.+. +++.+++|.++|++|+
T Consensus       151 ~-------------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~  216 (420)
T d1vp4a_         151 N-------------FVVVPLEDDGMDLNVLERKLSEFDKNGKIKQVKFIYVVSNFHNPAGVTT-SLEKRKALVEIAEKYD  216 (420)
T ss_dssp             E-------------EEEEEEETTEECHHHHHHHHHHHHHTTCGGGEEEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTT
T ss_pred             h-------------cccccccccccccchhhhhhhhhHHHhhccccceeeEecCCCCccchhh-hhhhhhhhhhhhhccc
Confidence            1             2222221    56666554432      113355566667788888777 8999999999999999


Q ss_pred             CEEEEeccccCCcccccCccccc----CCCCCcEEEecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHH
Q 017259          163 ILMIADEIQSGLARSGRMLASDW----EEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVA  238 (374)
Q Consensus       163 i~li~Dea~~~~~~~g~~~~~~~----~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa  238 (374)
                      ++||+||+|.++.+.+.......    .+...-+.++||.+.+|+ |+||+++++++++.+.......+.+.+.+.++++
T Consensus       217 i~ii~De~y~~l~~~~~~~~~~~~~~~~~~~i~~~s~sk~~~~G~-RiG~~~~~~~~i~~l~~~~~~~~~~~~~~~q~~~  295 (420)
T d1vp4a_         217 LFIVEDDPYGALRYEGETVDPIFKIGGPERVVLLNTFSKVLAPGL-RIGMVAGSKEFIRKIVQAKQSADLCSPAITHRLA  295 (420)
T ss_dssp             CEEEEECSSTTCBCSSCCCCCHHHHHCTTTEEEEEESTTTTCGGG-CEEEEECCHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             ccccccchhhhccccCcccccccccccccceeEEecccccccccc-ccccccccchhhhhhhhhhhhccccCchhhhhhh
Confidence            99999999998765554322111    111111236778777899 9999999999988887544444556677777777


Q ss_pred             HHHHHHHhh----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEec
Q 017259          239 IASLDVIRD----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAK  314 (374)
Q Consensus       239 ~~al~~~~~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~  314 (374)
                      ...++....    .+..+.++++.+.+.+.|++.....|++....+..|.|+|+.+++..   +..++++.|.++||.+.
T Consensus       296 a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~~~~~g~~~~~p~gg~f~~~~~~~~~---d~~~~~~~l~~~gV~v~  372 (420)
T d1vp4a_         296 ARYLERYDLLEQLKPTIELYRRKRTVMLNALEEYFSDIPGVKWVKSEGGLFIWLTLPEGF---DTWEMFEYAKRKKVFYV  372 (420)
T ss_dssp             HHHHHHSCHHHHTHHHHHHHHHHHHHHHHHHHHHSTTSTTCEECCCSBSSEEEEECCTTC---CTTTTHHHHHHHTEECE
T ss_pred             hhhcccccccccchhHHHHhhhhcccchhhhhhhhccCCCcEEecCCceEEEEEECCCCC---CHHHHHHHHHHCCeEEE
Confidence            666654221    13456666777777777777655544333323334678888887643   56788899999999998


Q ss_pred             cCC--------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          315 PTH--------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       315 ~~~--------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      |+.        .+++||+++ ..+++++++++++|+++++ +..
T Consensus       373 PG~~F~~~~~~~~~iRls~~-~~~~e~l~~a~~rL~~~l~-~~~  414 (420)
T d1vp4a_         373 PGRVFKVYDEPSPSMRLSFC-LPPDEKIVEGIKRLREVVL-EYG  414 (420)
T ss_dssp             EGGGGCTTCCCCSEEEEECS-SSCHHHHHHHHHHHHHHHH-HHH
T ss_pred             echhhCCCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH-Hhh
Confidence            751        579999954 3578899999999999998 653

>d1bs0a_ c.67.1.4 (A:) PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: PLP-dependent acyl-CoA synthase (8-amino-7-oxonanoate synthase, AONS)
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=9.2e-28  Score=221.67  Aligned_cols=303  Identities=19%  Similarity=0.246  Sum_probs=221.3

Q ss_pred             hHHHHHHHhccc-c-Cc---CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL-S-SR---AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~-~-~~---~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++... . ++   .+..+.+++||++|++++|.+.+++++||.+|+..++..+     ..++     +.|+..
T Consensus        59 ~a~~~a~~~~G~~~~~sr~~~g~~~~~~~lE~~LA~~~g~e~al~~~SG~~an~~~i~al-----~~~~-----d~v~~d  128 (383)
T d1bs0a_          59 RAWQQGAEQFGIGSGGSGHVSGYSVVHQALEEELAEWLGYSRALLFISGFAANQAVIAAM-----MAKE-----DRIAAD  128 (383)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTTCCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEE
T ss_pred             HHHHHHHHHhCCCCCccccccCcchHHHHHHHHHHHhcCCCceEEecccchhhHHHHHhh-----cCCC-----ceEEee
Confidence            567777776422 2 22   2567889999999999999999999999999999999988     4555     777776


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      ... |.........+.            ..+..++++|++++++.+.+++++.++++++.++++.|.+.|    +++|.+
T Consensus       129 ~~~-h~si~~g~~~~~------------~~~~~~~hnd~~~le~~l~~~~~~~~~vv~e~v~s~~G~i~p----l~~l~~  191 (383)
T d1bs0a_         129 RLS-HASLLEAASLSP------------SQLRRFAHNDVTHLARLLASPCPGQQMVVTEGVFSMDGDSAP----LAEIQQ  191 (383)
T ss_dssp             TTC-CHHHHHHHHTSS------------SEEEEECTTCHHHHHHHHHSCCSSCEEEEEESBCTTTCCBCC----HHHHHH
T ss_pred             ccc-cHHHhhccccCC------------CcceEecchHHHHHHHHhcccCCCceEEEecCCCCCCCcccc----hhHHHH
Confidence            665 554444332221            346678889999999999988778899999999999999999    999999


Q ss_pred             HHHhcCCEEEEeccccC--CcccccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCC--CCCCCC
Q 017259          157 LCSKYNILMIADEIQSG--LARSGRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEH--GSTFGG  230 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~--~~~~g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~--~~~~~~  230 (374)
                      +|++||+++++||+|+.  ++..|.. ..+.++..++++  ++||+++.   .+|++.++.++.+.++....  ..+...
T Consensus       192 l~~~~~~~livDeah~~gv~G~~g~G-~~~~~~~~~~~~~~t~~ka~g~---~Gg~v~~~~~~~~~l~~~~~~~~~s~~~  267 (383)
T d1bs0a_         192 VTQQHNGWLMVDDAHGTGVIGEQGRG-SCWLQKVKPELLVVTFGKGFGV---SGAAVLCSSTVADYLLQFARHLIYSTSM  267 (383)
T ss_dssp             HHHHTTCEEEEECTTTTTTSSGGGCC-HHHHTTCCCSEEEEESSSTTSS---CCEEEEECHHHHHHHHHHCHHHHSSBCC
T ss_pred             HHHhcCcEEEeecceeeeecCCcccc-hHHHcCCccccccccccccccc---cccccccchhHHHHHHhhchhhhhcccc
Confidence            99999999999999983  3444444 335666767655  67787762   44568888888887764322  334455


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ++...+++.++++.+...   ....+.+++..++++.|+++.     +.. ....++++.+.+.+..   .+.++.+.|+
T Consensus       268 ~p~~~aa~~~a~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~g-----~~~-~~~~s~Ii~v~~g~~~---~a~~~~~~L~  338 (383)
T d1bs0a_         268 PPAQAQALRASLAVIRSDEGDARREKLAALITRFRAGVQDLP-----FTL-ADSCSAIQPLIVGDNS---RALQLAEKLR  338 (383)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHTTSS-----CEE-CSCCSSBCCEEEESHH---HHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHhcC-----Ccc-CCCCCCEEEEEECCHH---HHHHHHHHHH
Confidence            777778888888877653   344556666666666665442     211 1223444445454432   5778999999


Q ss_pred             HCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          308 ERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       308 ~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ++||++.+.       +...+||+++..+|++|+|+++++|..+
T Consensus       339 ~~Gi~v~~~~~PtVp~g~~~lRi~~~a~ht~edid~l~~~L~~~  382 (383)
T d1bs0a_         339 QQGCWVTAIRPPTVPAGTARLRLTLTAAHEMQDIDRLLEVLHGN  382 (383)
T ss_dssp             HTTEECCEECTTSSCTTCEEECCBCCTTCCHHHHHHHHHHHHHH
T ss_pred             HCCceEEEEcCCCCCCCCceEEEEeCCCCCHHHHHHHHHHHHhc
Confidence            999998652       2457999999999999999999998764

>d1d2fa_ c.67.1.3 (A:) Modulator in mal gene expression, MalY {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Modulator in mal gene expression, MalY
species: Escherichia coli [TaxId: 562]

Probab=99.96  E-value=1.7e-27  Score=219.10  Aligned_cols=319  Identities=13%  Similarity=0.108  Sum_probs=197.8

Q ss_pred             hHHHHHHHhcccc-CcCCCCCcHHHHHHHHhcccC----CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTLS-SRAFYNDKFPVFAERLTSMFG----YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~~-~~~~~~~~~~~l~~~l~~~~~----~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.++++...+. .+....++++.+++++.+.+|    .++|++|+|+++++..++..+     .++|     |+|++.
T Consensus        19 eal~~~~~~~~~~Y~~~~g~~lr~~ia~~~~~~~g~~~~~~~i~it~G~~~~l~~~~~~l-----~~~g-----d~Vlv~   88 (361)
T d1d2fa_          19 EALNQRLMHGVFGYSRWKNDEFLAAIAHWFSTQHYTAIDSQTVVYGPSVIYMVSELIRQW-----SETG-----EGVVIH   88 (361)
T ss_dssp             HHHHHHHTTCCCCCCCSCCHHHHHHHHHHHHHHSCCCCCGGGEEEESCHHHHHHHHHHHS-----SCTT-----CEEEEE
T ss_pred             HHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHhCCCCCcceEEEeCCHHHHHHHHhhhc-----cccc-----cccccc
Confidence            4666666543322 222223445556666666543    468999999999999988887     6677     999999


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRD  156 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~  156 (374)
                      +|+|.++.............. ..... .+..   ..|++.+++.+.+  ++++++++++++||+|.+. +.+.+++|++
T Consensus        89 ~P~y~~~~~~~~~~g~~~~~v-~~~~~-~~~~---~~d~~~~~~~~~~--~~~~~i~l~~p~NPTG~~~-s~~~~~~i~~  160 (361)
T d1d2fa_          89 TPAYDAFYKAIEGNQRTVMPV-ALEKQ-ADGW---FCDMGKLEAVLAK--PECKIMLLCSPQNPTGKVW-TCDELEIMAD  160 (361)
T ss_dssp             ESCCHHHHHHHHHTTCEEEEE-ECEEC-SSSE---ECCHHHHHHHHTS--TTEEEEEEESSCTTTCCCC-CTTHHHHHHH
T ss_pred             cccccchhHHHHhhcceEEee-ccccc-cccc---ccccccchhhccc--CCceeEEeccccccccccc-chhhhhhhhh
Confidence            999976654443333221111 00000 0000   0278888888864  4889999999999999777 8999999999


Q ss_pred             HHHhcCCEEEEeccccCCcccccCccc-ccCCCCCc---EEEeccccc-CCccchhhheeC-HHHHhhcCCC--CCCCCC
Q 017259          157 LCSKYNILMIADEIQSGLARSGRMLAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLAD-KEVMLCIQPG--EHGSTF  228 (374)
Q Consensus       157 l~~~~~i~li~Dea~~~~~~~g~~~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~-~~~~~~~~~~--~~~~~~  228 (374)
                      +|+++|++||+||+|+++.+.+..... .... ..+   +.++||.++ +|+ |+||+... ..........  ......
T Consensus       161 ~~~~~~~~lI~De~y~~~~~~~~~~~~~~~~~-~~~~v~~~s~SK~~~~~g~-R~g~~~~~~~~~~~~~~~~~~~~~~~~  238 (361)
T d1d2fa_         161 LCERHGVRVISDEIHMDMVWGEQPHIPWSNVA-RGDWALLTSGSKSFNIPAL-TGAYGIIENSSSRDAYLSALKGRDGLS  238 (361)
T ss_dssp             HHHHTTCEEEEECTTTTCBCSSSCCCCGGGTC-CSSEEEEECSHHHHTCGGG-CCEEEEECSHHHHHHHHHHHHTTSCCC
T ss_pred             hhhhhheeeeeccccccccccccccccccccc-ccccccccccccccccccc-cceeeecchhHHHHHHhhhcccccccc
Confidence            999999999999999987554432221 1111 122   337789988 688 99997654 3322222111  111222


Q ss_pred             CCCHHHHHHHHHHHHHHhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEecc-CCCchhHHHHHHH
Q 017259          229 GGNPLASAVAIASLDVIRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDK-TALPVSAYDICLK  305 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~-~~~~~~~~~~~~~  305 (374)
                      +++...+.++..++.....  +.....++++.+.+.+.+...   .++.....+..+.++|++++. ..   +..+++++
T Consensus       239 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~~~~~~p~gg~~~~~~l~~~~~---~~~~~~~~  312 (361)
T d1d2fa_         239 SPSVLALTAHIAAYQQGAPWLDALRIYLKDNLTYIADKMNAA---FPELNWQIPQSTYLAWLDLRPLNI---DDNALQKA  312 (361)
T ss_dssp             SCCHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCCSBCSEEEEECGGGCC---CHHHHHHH
T ss_pred             cchhhhHHHHHHHhhccchhhhcccccchhhHHHHHHHhhhh---cccccccccCceeEEEEEccCCCC---CHHHHHHH
Confidence            3445555555544443211  122233333333333333332   222222223336677777742 32   68899999


Q ss_pred             HHHC-CeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          306 MKER-GILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       306 l~~~-Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      |+++ ||.+.|+      +.+++|+++  ..+++++++++++|+++++ ++
T Consensus       313 Ll~~~gv~v~pG~~F~~~~~~~vRis~--~~~~e~l~~al~rl~~~l~-~l  360 (361)
T d1d2fa_         313 LIEQEKVAIMPGYTYGEEGRGFVRLNA--GCPRSKLEKGVAGLINAIR-AV  360 (361)
T ss_dssp             HHHTTCEECEEGGGGCGGGTTEEEEEC--CSCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHhCCEEEEeccccCCCCCCEEEEEE--cCCHHHHHHHHHHHHHHHH-hc
Confidence            8765 9999875      357899994  5688999999999999998 65

>d1w7la_ c.67.1.1 (A:) Kynurenine--oxoglutarate transaminase I {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Kynurenine--oxoglutarate transaminase I
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.9e-27  Score=220.09  Aligned_cols=310  Identities=15%  Similarity=0.137  Sum_probs=205.5

Q ss_pred             CCCCcHHHHHHHHhcccCC-----CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMFGY-----DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~-----~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +..++++.+++++.+.+|.     ++|++|+|+++|+..++..+     ..+|     +.|++..|+|+.+.......+.
T Consensus        65 G~~~LReaia~~~~~~~g~~~~~~~~I~it~G~~~al~~~~~~l-----~~~g-----~~vlv~~p~~~~y~~~~~~~g~  134 (418)
T d1w7la_          65 GYPPLTKILASFFGELLGQEIDPLRNVLVTVGGYGALFTAFQAL-----VDEG-----DEVIIIEPFFDCYEPMTMMAGG  134 (418)
T ss_dssp             CCHHHHHHHHHHHHHHHTCCCCHHHHEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHHhCCCCCcccceeeccCcHHHHHHHHHhh-----ccCC-----ceeeccccccchhHHHHHHcCC
Confidence            3344555666666665443     36999999999999999988     6677     9999999999887766655554


Q ss_pred             CccccccCCCCCCCceec----cC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           93 DNEAIRGFGPLLPGHLKV----DF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~----~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                      ........ +........    .+ .|.+++...   ..++++++++.+++||+|.+. +++.+++|.++|++|+++||+
T Consensus       135 ~~v~~~~~-~~~~~~~~~~~~~~~~~d~~~~~~~---~~~~~~~i~~~~p~NPtG~~~-s~~~~~~i~~~a~~~~v~vI~  209 (418)
T d1w7la_         135 RPVFVSLK-PGPIQNGELGSSSNWQLDPMELAGK---FTSRTKALVLNTPNNPLGKVF-SREELELVASLCQQHDVVCIT  209 (418)
T ss_dssp             EEEEEECE-ECC---CCSEEGGGEECCHHHHHHH---CCTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEE
T ss_pred             Eeeccccc-cccccccccccccCcccchhhhhcc---ccccccceeccCcCCcccccc-cHHHHHHHHHHHHhcCCCchh
Confidence            32222110 000000000    00 134444333   336889999988999999887 899999999999999999999


Q ss_pred             eccccCCcccccCc-cc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHH
Q 017259          168 DEIQSGLARSGRML-AS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIAS  241 (374)
Q Consensus       168 Dea~~~~~~~g~~~-~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~a  241 (374)
                      ||+|.++.+.+... .. ...+..+.   +.|+||.++ +|+ |+||++++++++..+.......+++.+.+++.++..+
T Consensus       210 De~Y~~l~~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~pG~-RvG~~v~~~~~~~~l~~~~~~~~~~~~~~~q~~~~~~  288 (418)
T d1w7la_         210 DEVYQWMVYDGHQHISIASLPGMWERTLTIGSAGKTFSATGW-KVGWVLGPDHIMKHLRTVHQNSVFHCPTQSQAAVAES  288 (418)
T ss_dssp             ECTTTTCBCTTCCCCCGGGSTTTGGGEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHTTTSCCCHHHHHHHHHH
T ss_pred             hhhhHHhhcCCCCCCCHHHccccccccceecccCccccCCCC-cccccccchhhhhhhccccccccccccchhhHHHHHH
Confidence            99999876655422 22 22222233   338999988 699 9999999999888877655556778888888888877


Q ss_pred             HHHHhh-----hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC----------CchhHHHHHHHH
Q 017259          242 LDVIRD-----EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA----------LPVSAYDICLKM  306 (374)
Q Consensus       242 l~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~----------~~~~~~~~~~~l  306 (374)
                      +.....     .++....+...++.++.+.+..... ++....+..|.|+|+++++..          ......+++++|
T Consensus       289 l~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~-g~~~~~P~gg~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l  367 (418)
T d1w7la_         289 FEREQLLFRQPSSYFVQFPQAMQRCRDHMIRSLQSV-GLKPLIPQGSYFLITDISDFKRKMPDLPGAVDEPYDRRFVKWM  367 (418)
T ss_dssp             HHHHHHTTTSTTSHHHHHHHHHHHHHHHHHHHHHTT-TCEEEECSBSSEEEEECHHHHHHCCCCCCCTTCCHHHHHHHHH
T ss_pred             hhhccccccccccccccchhhhhhhhhhhhhhhhhc-CCcccCCCceeEEEEECcccccccchhccccccccHHHHHHHH
Confidence            765321     2344444444444444443333332 333223334677787765310          012456788887


Q ss_pred             HH-CCeEeccCC-----------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          307 KE-RGILAKPTH-----------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       307 ~~-~Gi~v~~~~-----------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++ +||.+.|+.           .++|||+  +..+++++++++++|++...
T Consensus       368 l~~~gV~v~PG~~F~~~~~~~~~~~~iRis--~~~~~~~l~~a~~rl~~~~~  417 (418)
T d1w7la_         368 IKNKGLVAIPVSIFYSVPHQKHFDHYIRFC--FVKDEATLQAMDEKLRKWKV  417 (418)
T ss_dssp             HHHHCEECEEGGGGSCHHHHTTSCSEEEEE--CCCCHHHHHHHHHHHHHHHC
T ss_pred             HHHCCEEEEcchhhcCCCccCCCCCEEEEE--EcCCHHHHHHHHHHHHHHhc
Confidence            64 599998752           4799999  55788999999999988754

>d1m7ya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Apple (Malus domestica) [TaxId: 3750]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Apple (Malus domestica) [TaxId: 3750]

Probab=99.95  E-value=5e-27  Score=220.89  Aligned_cols=309  Identities=14%  Similarity=0.077  Sum_probs=196.3

Q ss_pred             CCCCcHHHHHHHHhcccC------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..++++.+++.+.+.+|      .++|++|+|+++++..++.++     ..+|     |.|++..|+|++.........
T Consensus        85 G~~~LR~aiA~~l~~~~~~~~~~~pe~I~it~G~~~al~~~~~~l-----~~pG-----d~Vlv~~P~y~~~~~~~~~~~  154 (431)
T d1m7ya_          85 GLPAFKKAMVDFMAEIRGNKVTFDPNHLVLTAGATSANETFIFCL-----ADPG-----EAVLIPTPYYPGFDRDLKWRT  154 (431)
T ss_dssp             CCHHHHHHHHHHHHHHTTTSSCCCGGGEEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHTTTTT
T ss_pred             CcHHHHHHHHHHHHHHhCCCCCCCcceEEECCCHHHHHHHHHHHh-----cCCC-----CEEEEeCCCchhHHHHHHHhc
Confidence            344566667777776543      469999999999999999988     6677     999999999977655443332


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      +...+...   ...+ .... .|.+.+++.+.+   ...+++++++++++|++|.+. +++.+++|.++|++||++||+|
T Consensus       155 g~~~v~v~---~~~~-~~~~-l~~~~~~~~~~~~~~~~~~~~~i~~~nP~NPtG~~~-s~~~l~~i~~~a~~~~~~vI~D  228 (431)
T d1m7ya_         155 GVEIVPIH---CTSS-NGFQ-ITETALEEAYQEAEKRNLRVKGVLVTNPSNPLGTTM-TRNELYLLLSFVEDKGIHLISD  228 (431)
T ss_dssp             CCEEEEEE---CCGG-GTSC-CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEE
T ss_pred             Cceecccc---ccch-hccc-ccHHHhhhhhhhhhhccCcceEEEecCccccccccc-cccccccccccccccCcceeec
Confidence            21111100   0000 0001 167777777653   446789999999999999877 8999999999999999999999


Q ss_pred             ccccCCcccccCcc-c-c---cCC------CCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHH
Q 017259          169 EIQSGLARSGRMLA-S-D---WEE------VRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPL  233 (374)
Q Consensus       169 ea~~~~~~~g~~~~-~-~---~~~------~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  233 (374)
                      |+|+++.+.+..+. . .   ...      ....   +.|+||.++ +|+ |+||+++++++....... .......+..
T Consensus       229 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~G~-RiG~~~~~~~~i~~~~~~-~~~~~~~~~~  306 (431)
T d1m7ya_         229 EIYSGTAFSSPSFISVMEVLKDRNCDENSEVWQRVHVVYSLSKDLGLPGF-RVGAIYSNDDMVVAAATK-MSSFGLVSSQ  306 (431)
T ss_dssp             CTTGGGCCSSSCCCCHHHHTTTTTCSSSSSGGGGEEEEEESSSSSCCGGG-CEEEEEESCHHHHHHHHH-HGGGSCCCHH
T ss_pred             ccccccccCCCCCCCHHHHhhhcccccccccCceEEEEecCcccccCCCC-ccceeccchhhhHHHHHH-Hhcccccccc
Confidence            99997655443221 1 0   000      0111   338999999 799 999999987765443321 1222333445


Q ss_pred             HHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---chhHHHHHHHHHH-
Q 017259          234 ASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKMKE-  308 (374)
Q Consensus       234 ~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l~~-  308 (374)
                      .+.++.+.+..... +++.++.+...+..++.+.+..... ++.......|.|+|++++....   ..+..+++++|++ 
T Consensus       307 ~~~~~~a~l~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~-gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~ll~~  385 (431)
T d1m7ya_         307 TQHLLSAMLSDKKLTKNYIAENHKRLKQRQKKLVSGLQKS-GISCLNGNAGLFCWVDMRHLLRSNTFEAEMELWKKIVYE  385 (431)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT-TCEECCCCSSSEEEEECGGGSSSSSHHHHHHHHHHHHHT
T ss_pred             ccchhhhhhccchhhhhhhhhhhhhhhhhhhhhhhhhhcC-CcEEecCCceeEEEEECccccccCcccCHHHHHHHHHHH
Confidence            54444444332111 2333333333333333443333332 3322223347788888864221   2345678888875 


Q ss_pred             CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          309 RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .||.+.|+      .++++||++. ..+++++++++++|+++++
T Consensus       386 ~gV~v~PG~~F~~~~~~~~Ri~~a-~~~e~~l~~al~rL~~~l~  428 (431)
T d1m7ya_         386 VHLNISPGSSCHCTEPGWFRVCFA-NLPERTLDLAMQRLKAFVG  428 (431)
T ss_dssp             SCEECEEGGGGTCSSTTEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             CCEEEEeccccCCCCCCEEEEEeC-cCCHHHHHHHHHHHHHHHH
Confidence            59999885      3689999953 3467889999999999987

>d2gb3a1 c.67.1.1 (A:4-392) AAT homologue TM1698 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: AAT homologue TM1698
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=7.5e-28  Score=223.72  Aligned_cols=299  Identities=12%  Similarity=0.082  Sum_probs=195.4

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +..++++.+++++.+..    ..+++++|+|+++++..++.++     ..+|     +.|++..|+|..........+..
T Consensus        65 G~~~LR~aia~~~~~~~g~~~~~~~I~it~G~~~~l~~~~~~l-----~~~g-----d~V~i~~P~y~~~~~~~~~~g~~  134 (389)
T d2gb3a1          65 GIWELREAFASYYKRRQRVDVKPENVLVTNGGSEAILFSFAVI-----ANPG-----DEILVLEPFYANYNAFAKIAGVK  134 (389)
T ss_dssp             CCHHHHHHHHHHHHHTSCCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHHHHHTCE
T ss_pred             CCHHHHHHHHHHHHHhcCCCcccceEEeccccccccccccccc-----ccCC-----CeEEEeCCCCccccccccccCcc
Confidence            33445566777776654    3568999999999999999988     6677     99999999997766555544432


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      .....      ....... .+.+.+..   ...++++++++++++||+|.+. +.+.+++|.++|++||++||+||+|.+
T Consensus       135 ~~~~~------~~~~~~~-~~~~~~~~---~~~~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~iI~De~y~~  203 (389)
T d2gb3a1         135 LIPVT------RRMEEGF-AIPQNLES---FINERTKGIVLSNPCNPTGVVY-GKDEMRYLVEIAERHGLFLIVDEVYSE  203 (389)
T ss_dssp             EEEEE------CCGGGTS-CCCTTGGG---GCCTTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEECTTTT
T ss_pred             ccccc------ccccccc-chhhhhhh---hcccCccEEEeCCCCccccccc-hHHHHHHHHhhcccCCEEEEEeccccc
Confidence            11110      0000000 01222222   2336899999999999999888 899999999999999999999999998


Q ss_pred             CcccccCcccccCCCCCc--EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh--h
Q 017259          174 LARSGRMLASDWEEVRPD--MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD--E  248 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d--~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~--~  248 (374)
                      +.+.+.............  +.|+||.++ +|+ |+||++++.+.+...........++.+.+.+.++...+...+.  +
T Consensus       204 ~~~~~~~~~~~~~~~~~~~v~~s~sK~~~~~Gl-RiG~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  282 (389)
T d2gb3a1         204 IVFRGEFASALSIESDKVVVIDSVSKKFSACGA-RVGCLITRNEELISHAMKLAQGRLAPPLLEQIGSVGLLNLDDSFFD  282 (389)
T ss_dssp             CBCSSCCCCGGGSCCTTEEEEEESTTTTTCGGG-CCEEEECSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHTCCHHHHH
T ss_pred             cccccccccccccccccccccccccccccCccc-ceeeeeccchhHHHHHhhhhhccccccccccccccccccccchhcc
Confidence            766554333222211112  337889888 699 9999988654333322222233445566776666655532111  1


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC------CeEeccC------
Q 017259          249 KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER------GILAKPT------  316 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~------Gi~v~~~------  316 (374)
                      ...++++++++.+.+.|++.    +......+..+.++|+.++..    +..++++.|+++      ||.+.|+      
T Consensus       283 ~~~~~~~~~~~~~~~~L~~~----~~~~~~~p~~g~~~~~~lp~~----~~~~~~~~ll~e~~l~~~~v~v~pg~~f~~~  354 (389)
T d2gb3a1         283 FVRETYRERVETVLKKLEEH----GLKRFTKPSGAFYITAELPVE----DAEEFARWMLTDFNMDGETTMVAPLRGFYLT  354 (389)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT----TCCCBCCCSBSSEEEEECSSS----CHHHHHHHHHHSCCBTTEEEECEEGGGGCSS
T ss_pred             cccccccccchhhhhhhhhh----ccccccCCCceEEEEEeCCCC----CHHHHHHHHHHhhhhhhCCEEEEeCcccccC
Confidence            23344444555555555443    222223345578888888755    678899998765      6667653      


Q ss_pred             ---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          317 ---HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       317 ---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                         +.+++||+  +..+++++++++++|+++++ .+
T Consensus       355 ~~~~~~~iRis--~~~~~~~l~~a~~~L~~~lk-~f  387 (389)
T d2gb3a1         355 PGLGKKEIRIA--CVLEKDLLSRAIDVLMEGLK-MF  387 (389)
T ss_dssp             TTTTSSEEEEE--CCSCHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCCCCEEEEE--EcCCHHHHHHHHHHHHHHHH-Hh
Confidence               15799999  45789999999999999998 54

>d1bw0a_ c.67.1.1 (A:) Tyrosine aminotransferase (TAT) {Trypanosoma cruzi [TaxId: 5693]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Tyrosine aminotransferase (TAT)
species: Trypanosoma cruzi [TaxId: 5693]

Probab=99.95  E-value=2.9e-27  Score=221.33  Aligned_cols=306  Identities=12%  Similarity=0.048  Sum_probs=196.0

Q ss_pred             CCCCcHHHHHHHHhccc----------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccc
Q 017259           18 FYNDKFPVFAERLTSMF----------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAA   87 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~   87 (374)
                      +..++++.+++++.+.+          ..+++++|+|+++|+..+++++     ..+|     |+|++.+|+|+++...+
T Consensus        73 G~~~LReaia~~~~~~~~~~~~~~~~~~~~~I~it~G~~~al~~~~~~l-----~~~G-----d~Vlv~~P~y~~~~~~~  142 (412)
T d1bw0a_          73 GSPEAREAVATWWRNSFVHKEELKSTIVKDNVVLCSGGSHGILMAITAI-----CDAG-----DYALVPQPGFPHYETVC  142 (412)
T ss_dssp             CCHHHHHHHHHHHHHHHCCSTTTGGGCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhcCcccccCCCCCCCeEEEecccccchhhhhhhh-----hccc-----cceeeeeccchhhhhhh
Confidence            44455666777776542          3568999999999999999988     6778     99999999998776665


Q ss_pred             ccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEE
Q 017259           88 ISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIA  167 (374)
Q Consensus        88 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~  167 (374)
                      ...+.......    .......  ..+++++++.+.   ++++++++++++||+|.+. +++.+++|.++|++|+++||+
T Consensus       143 ~~~G~~~~~v~----~~~~~~~--~~~~~~l~~~~~---~~~~~~~l~np~NPtG~~~-~~~~~~~i~~~~~~~~~~vi~  212 (412)
T d1bw0a_         143 KAYGIGMHFYN----CRPENDW--EADLDEIRRLKD---DKTKLLIVTNPSNPCGSNF-SRKHVEDIVRLAEELRLPLFS  212 (412)
T ss_dssp             HHTTCEEEEEE----EEGGGTT--EECHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCCEEE
T ss_pred             hccCccccccc----ccccccc--chhhHHHHhhhh---ccccccccccccccccccc-hhhhccccccccccCCeeeec
Confidence            55443221110    0000000  016777776655   6889999999999999887 899999999999999999999


Q ss_pred             eccccCCcccccCc-ccc-c---CCCCCcE---EEeccccc-CCccchhhheeCHHHHh------hcCCCCCCCCCCCCH
Q 017259          168 DEIQSGLARSGRML-ASD-W---EEVRPDM---VILGKALG-GGVIPVSAVLADKEVML------CIQPGEHGSTFGGNP  232 (374)
Q Consensus       168 Dea~~~~~~~g~~~-~~~-~---~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~------~~~~~~~~~~~~~~~  232 (374)
                      ||+|.++.+.+... ... .   ......+   .++||.++ +|+ |+||+++++....      ..... ...+.+.+.
T Consensus       213 De~Y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~SK~~~~~G~-RvG~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~  290 (412)
T d1bw0a_         213 DEIYAGMVFKGKDPNATFTSVADFETTVPRVILGGTAKNLVVPGW-RLGWLLYVDPHGNGPSFLEGLKRV-GMLVCGPCT  290 (412)
T ss_dssp             ECTTTTCBCCSSCTTCCCCCTTSSCCSCCEEEEEESTTTTSCGGG-CCEEEEEECTTCSCHHHHHHHHHH-HHHHTCSCH
T ss_pred             hhhHHHhccCCCCCccccccccccccccccccccccCccCccCCC-Ccccccccchhhcchhhhhhhccc-cccccCCch
Confidence            99999886665321 111 1   1111122   27899998 699 9999887643221      11111 112233344


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC--chhHHHHHHHHHHC-
Q 017259          233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL--PVSAYDICLKMKER-  309 (374)
Q Consensus       233 ~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~--~~~~~~~~~~l~~~-  309 (374)
                      +.++++.+.+.. ..+++..++++..+..++.+.+.....+++....+..|.|+|..++....  ..+..+++++|+++ 
T Consensus       291 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~l~~~~g~~~~~p~gg~~l~~~~~~~~~~~~~~~~~~~~~ll~~~  369 (412)
T d1bw0a_         291 VVQAALGEALLN-TPQEHLDQIVAKIEESAMYLYNHIGECIGLAPTMPRGAMYLMSRIDLEKYRDIKTDVEFFEKLLEEE  369 (412)
T ss_dssp             HHHHHHHHHHHS-SCHHHHHHHHHHHHHHHHHHHHHHTTSTTEEECCCCBTTEEEEEECGGGBSSCCSHHHHHHHHHHHH
T ss_pred             hhhhhccccccc-ccccccccccchhHHHHHHHHHHHHHhcCceecCCCCceEEEEeCChhhcCCCCCHHHHHHHHHHhC
Confidence            544444433321 12234444444444444444444433323322223346667776652211  12567899998764 


Q ss_pred             CeEeccC----CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          310 GILAKPT----HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       310 Gi~v~~~----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ||.+.|+    .++++||+  +..+++++++++++|+++++ +.
T Consensus       370 gV~v~PG~~Fg~~g~iRis--~~~~~e~l~eal~Rl~~~l~-~~  410 (412)
T d1bw0a_         370 NVQVLPGTIFHAPGFTRLT--TTRPVEVYREAVERIKAFCQ-RH  410 (412)
T ss_dssp             CEECEEGGGGTCTTEEEEE--CCSCHHHHHHHHHHHHHHHH-HH
T ss_pred             CEEEEeccccCCCCeEEEE--EcCCHHHHHHHHHHHHHHHH-hc
Confidence            9999985    37899999  45789999999999999987 53

>d2bwna1 c.67.1.4 (A:2-397) 5-aminolevulinate synthase {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 5-aminolevulinate synthase
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=99.95  E-value=6.8e-27  Score=214.89  Aligned_cols=305  Identities=16%  Similarity=0.203  Sum_probs=218.9

Q ss_pred             hHHHHHHHhccc--cCcC---CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEe
Q 017259            2 KALQEQAEKLTL--SSRA---FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSC   76 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~---~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~   76 (374)
                      +|+.+++++...  ..++   +..+.+++||++|++++|.+.+++++||..|+..++..+..   ..+|     +.| +.
T Consensus        66 ~a~~~al~~yG~gs~~Sr~~~G~~~~h~~LE~~lA~~~g~e~all~~sG~~An~~~i~~l~~---~~~~-----d~i-~~  136 (396)
T d2bwna1          66 AAMHEALEAVGAGSGGTRNISGTTAYHRRLEAEIAGLHQKEAALVFSSAYNANDATLSTLRV---LFPG-----LII-YS  136 (396)
T ss_dssp             HHHHHHHHHHCSCCCSBTTTBCCBHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHHHH---HSTT-----CEE-EE
T ss_pred             HHHHHHHHHhCCCccccccccCCchHHHHHHHHHHHHhCCCceeeeecchHHHHHHHHHHhc---ccCC-----Cce-ee
Confidence            566777776332  2222   55678899999999999999999999999999999998842   1233     544 44


Q ss_pred             ccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhc-CCcEEEEEEccccCCCCcccCChhHHHHHH
Q 017259           77 CGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKES-GDQIAGFLFEPIQGEAGVIIPPDGYLKAVR  155 (374)
Q Consensus        77 ~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~-~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~  155 (374)
                      +-..|........+++            ..+..++++|++++++.++.+ +...+.++++.++++.|.+.|    +++|.
T Consensus       137 D~~~Hasi~~g~~ls~------------a~~~~f~Hnd~~~l~~l~~~~~~~~~~~iv~egvySmdGd~ap----l~~l~  200 (396)
T d2bwna1         137 DSLNHASMIEGIKRNA------------GPKRIFRHNDVAHLRELIAADDPAAPKLIAFESVYSMDGDFGP----IKEIC  200 (396)
T ss_dssp             ETTCCHHHHHHHHHSC------------CCEEEECTTCHHHHHHHHHHSCTTSCEEEEEESBCTTTCCBCC----HHHHH
T ss_pred             hhhhhhccchhhhccc------------cCceEeecchHHHhhhHHhhhcccCceeEEEEeeccCcccccc----cHhHH
Confidence            4444655444443332            446677889999999888754 356788999999999999999    99999


Q ss_pred             HHHHhcCCEEEEecccc-C-CcccccCcccccCCC--CCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCC-
Q 017259          156 DLCSKYNILMIADEIQS-G-LARSGRMLASDWEEV--RPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTF-  228 (374)
Q Consensus       156 ~l~~~~~i~li~Dea~~-~-~~~~g~~~~~~~~~~--~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~-  228 (374)
                      ++|++||..+++||+|+ | +|..|.... ..++.  ..|++  ||||++|+   ..|++++++++.+.++.......| 
T Consensus       201 ~L~~~y~~~L~vDeAHs~Gv~G~~G~G~~-~~~~~~~~~di~~gTlsKa~g~---~Gg~v~~~~~~i~~l~~~~~~~ifS  276 (396)
T d2bwna1         201 DIAEEFGALTYIDEVHAVGMYGPRGAGVA-ERDGLMHRIDIFNGTLAKAYGV---FGGYIAASARMVDAVRSYAPGFIFS  276 (396)
T ss_dssp             HHHHHHTCEEEEECTTTTTTSSTTSCCHH-HHHTCGGGCSEEEEESSSTTCS---CCEEEEECHHHHHHHHHHCHHHHTS
T ss_pred             HHhhhhcceeeeccceeeeeeccccccch-hhcCCceeeeeeeecccccccc---cccccchhHHHHHHHHhhcchhhhc
Confidence            99999999999999998 3 456665533 23332  23444  99999983   224588999998888754333333 


Q ss_pred             -CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          229 -GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       229 -~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                       +.++...+++.++++.+..+   ..+.+++.+.+++++.+..+...+   .   ...+.++.+.+.+..   ...++++
T Consensus       277 talpp~~~aa~~~al~i~~~~~~~~~r~~l~~~~~~~~~~l~~~g~~~---~---~~~spIvpv~ig~~~---~~~~~a~  347 (396)
T d2bwna1         277 TSLPPAIAAGAQASIAFLKTAEGQKLRDAQQMHAKVLKMRLKALGMPI---I---DHGSHIVPVVIGDPV---HTKAVSD  347 (396)
T ss_dssp             BCCCHHHHHHHHHHHHHHTSHHHHHHHHHHHHHHHHHHHHHHHHTCCB---C---CCSSSCEEEECCCHH---HHHHHHH
T ss_pred             ccCcHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHhcCCCc---C---CCCCCEEEEEeCCHH---HHHHHHH
Confidence             55777777888888887553   345666677888888887764221   1   123455555554432   5677888


Q ss_pred             HHH-HCCeEeccC-------CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          305 KMK-ERGILAKPT-------HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       305 ~l~-~~Gi~v~~~-------~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .|+ ++||++.+.       +...+||+++..+|++||++++++|+++
T Consensus       348 ~lL~e~Gi~v~~i~~PtVp~g~~rlRi~lsa~ht~edId~l~~~L~~i  395 (396)
T d2bwna1         348 MLLSDYGVYVQPINFPTVPRGTERLRFTPSPVHDLKQIDGLVHAMDLL  395 (396)
T ss_dssp             HHHHHHCEECCEECTTTSCTTCCEEEECCCTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHhCCEEEEEECCCcCCCCCeeEEEEeCccCCHHHHHHHHHHHHHh
Confidence            876 679988542       3467999999999999999999999875

>d1o4sa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Thermotoga maritima [TaxId: 2336]

Probab=99.95  E-value=3.5e-27  Score=218.07  Aligned_cols=294  Identities=15%  Similarity=0.158  Sum_probs=194.7

Q ss_pred             CCCcHHHHHHHHhccc----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc
Q 017259           19 YNDKFPVFAERLTSMF----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN   94 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~   94 (374)
                      ..++++.+++++....    ..+++++|+|+++|+..++.++     ..+|     |.|++.+|+|..+...........
T Consensus        67 ~~~lR~aia~~~~~~~~~~~~~~~i~~t~G~~~al~~~~~~l-----~~~g-----d~vlv~~P~y~~~~~~~~~~~~~~  136 (375)
T d1o4sa_          67 IYELREGIAKRIGERYKKDISPDQVVVTNGAKQALFNAFMAL-----LDPG-----DEVIVFSPVWVSYIPQIILAGGTV  136 (375)
T ss_dssp             CHHHHHHHHHHHHHHHTCCCCGGGEEEESHHHHHHHHHHHHH-----CCTT-----CEEEEEESCCTTHHHHHHHTTCEE
T ss_pred             CHHHHHHHHhhhhhccccccccccccccCcHHHHHHHHHHHH-----hCCC-----CEEEEccCccccchhhhhcccccc
Confidence            3444445555554433    3568999999999999999988     6677     999999999977655544333211


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCC
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGL  174 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~  174 (374)
                      ....      .........+.+.++....   ++++++++++++||+|.+. +.+.+++|.++|++|+++||+||+|..+
T Consensus       137 ~~~~------~~~~~~~~~~~~~~~~~~~---~~~~~~~l~nP~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De~y~~~  206 (375)
T d1o4sa_         137 NVVE------TFMSKNFQPSLEEVEGLLV---GKTKAVLINSPNNPTGVVY-RREFLEGLVRLAKKRNFYIISDEVYDSL  206 (375)
T ss_dssp             EEEE------CCGGGTTCCCHHHHHHTCC---TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTTTS
T ss_pred             cccc------ccccccccchhHHHHHhhc---cCccEEEEeCCCCCccCCC-CHHHHHHHHHhHHHcCCceehHhhhccc
Confidence            1100      0000000115565554433   6788999999999999888 8999999999999999999999999876


Q ss_pred             cccccCccc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          175 ARSGRMLAS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       175 ~~~g~~~~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      ...+..... ...+....   +.|+||.++ +|+ |+||+++++++.+.+.......+.......+..+...++.. ...
T Consensus       207 ~~~~~~~~~~~~~~~~~~~i~~~S~SK~~~l~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  284 (375)
T d1o4sa_         207 VYTDEFTSILDVSEGFDRIVYINGFSKSHSMTGW-RVGYLISSEKVATAVSKIQSHTTSCINTVAQYAALKALEVD-NSY  284 (375)
T ss_dssp             BCSSCCCCHHHHCSSSTTEEEEEESTTTTTCGGG-CCEEEECCHHHHHHHHHHHHHHTCSCCHHHHHHHHHHTTCC-CHH
T ss_pred             cccccccccccccCCCCCEEEEeechhhccCCcc-ccccccccccchhhhhhhhccccccccccchhhhhhhcccc-hhh
Confidence            443332221 11222223   348999999 799 99999999988777664433333444544444443322211 124


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccC----CCCEEEEe
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPT----HDTIVRLT  324 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~----~~~~lRi~  324 (374)
                      ..+.++++.+.+.+.|++.+     +....+..|.|+|+.++.+     ..+++.+|+ ++||.+.|+    .++++||+
T Consensus       285 ~~~~~~~r~~~~~~~l~~~g-----~~~~~p~gg~f~~~~~~~~-----~~~~~~~ll~~~gV~v~pG~~F~~~g~iRis  354 (375)
T d1o4sa_         285 MVQTFKERKNFVVERLKKMG-----VKFVEPEGAFYLFFKVRGD-----DVKFCERLLEEKKVALVPGSAFLKPGFVRLS  354 (375)
T ss_dssp             HHHHHHHHHHHHHHHHHHTT-----CCCCCCSBSSEEEEECSSC-----HHHHHHHHHHHHCEECEEGGGGTCTTEEEEE
T ss_pred             hHHHHHHHHHHHHHHHHhcC-----ceEecCCccEEEEEECCCC-----HHHHHHHHHHhCCEEEEEccccCCCCeEEEE
Confidence            45666666777766666542     2222233467778877653     456666655 569999985    37899999


Q ss_pred             cCCCCCHHHHHHHHHHHHHHHh
Q 017259          325 PPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       325 ~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +  ..+++++++++++|+++++
T Consensus       355 ~--~~~~e~l~~al~rl~~~l~  374 (375)
T d1o4sa_         355 F--ATSIERLTEALDRIEDFLN  374 (375)
T ss_dssp             C--CSCHHHHHHHHHHHHHHHT
T ss_pred             E--cCCHHHHHHHHHHHHHHhc
Confidence            4  5689999999999999886

>d1iaya_ c.67.1.4 (A:) 1-aminocyclopropane-1-carboxylate synthase (ACC synthase) {Tomato (Lycopersicon esculentum) [TaxId: 4081]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 1-aminocyclopropane-1-carboxylate synthase (ACC synthase)
species: Tomato (Lycopersicon esculentum) [TaxId: 4081]

Probab=99.95  E-value=1.5e-26  Score=217.43  Aligned_cols=304  Identities=12%  Similarity=0.060  Sum_probs=192.0

Q ss_pred             CCCCcHHHHHHHHhcccC------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           18 FYNDKFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      +..++++.+++.+.+.+|      .+++++|+|+++++..++.++     ..+|     |.|++..|+|.++........
T Consensus        84 G~~~LR~aiA~~l~~~~~~~~~~~~e~Ivit~G~~~al~~~~~~l-----~~~G-----d~Vlv~~P~y~~~~~~~~~~~  153 (428)
T d1iaya_          84 GLPEFRKAIAKFMEKTRGGRVRFDPERVVMAGGATGANETIIFCL-----ADPG-----DAFLVPSPYYPAFNRDLRWRT  153 (428)
T ss_dssp             CCHHHHHHHHHHHHHHTTTCSCCCTTSCEEEEHHHHHHHHHHHHH-----CCTT-----CEEEEESSCCTTHHHHTTTTT
T ss_pred             chHHHHHHHHHHHHHHhCCCCCCChhhEEEcCCHHHHHHHHHHHh-----CCCC-----CEEEEccCCchHHHHHHHHhc
Confidence            444566677777776543      568999999999999999988     6778     999999999977654433222


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHH---hcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFK---ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~---~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      +.........+. .+..    .|.++++.+++   +..++++++++++++||+|.+. +.+.+++|.++|++||++||+|
T Consensus       154 g~~~v~v~~~~~-~~~~----~d~~~~~~~~~~~~~~~~~~~~~~l~nP~NPtG~~~-s~~~~~~i~~~a~~~~~~vI~D  227 (428)
T d1iaya_         154 GVQLIPIHCESS-NNFK----ITSKAVKEAYENAQKSNIKVKGLILTNPSNPLGTTL-DKDTLKSVLSFTNQHNIHLVCD  227 (428)
T ss_dssp             CCEEEEECCCTT-TTTC----CCHHHHHHHHHHHHHTTCCEEEEEEESSCTTTCCCC-CHHHHHHHHHHHHTTTCEEEEE
T ss_pred             CCeEEEeecccc-cccc----cccccccchhhhhhccCCCceEEEEccCCCcccccc-cccccchhheeeccCcEEEEec
Confidence            211111100000 0001    16777665543   3456889999999999999777 8999999999999999999999


Q ss_pred             ccccCCcccccCccc--cc-------CCCCCc---EEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHH
Q 017259          169 EIQSGLARSGRMLAS--DW-------EEVRPD---MVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLA  234 (374)
Q Consensus       169 ea~~~~~~~g~~~~~--~~-------~~~~~d---~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~  234 (374)
                      |+|+++.+.+..+..  +.       ......   +.|+||.++ +|+ |+||+++ ++.+.+.+.....  ....+...
T Consensus       228 e~Y~~~~~~~~~~~s~~~~~~~~~~~~~~~~~vi~~~s~SK~~~~~Gl-RiG~~~~~~~~l~~~~~~~~~--~~~~~~~~  304 (428)
T d1iaya_         228 EIYAATVFDTPQFVSIAEILDEQEMTYCNKDLVHIVYSLSKDMGLPGF-RVGIIYSFNDDVVNCARKMSS--FGLVSTQT  304 (428)
T ss_dssp             CTTGGGCCSSSCCCCHHHHHTSGGGTTSCTTSEEEEEESTTTSSCGGG-CEEEEEESCHHHHHHHHHHHT--TSCCCHHH
T ss_pred             ccccccccCcccccccccccchhhccccccceEEEEecCCCcccCCCc-ccccccccccchhhhhhhhhc--cccccccc
Confidence            999977555543211  00       011111   348999998 699 9999887 4556555543211  12234444


Q ss_pred             HHHHHHHHHHHhh-hcH----HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCC---chhHHHHHHHH
Q 017259          235 SAVAIASLDVIRD-EKL----AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTAL---PVSAYDICLKM  306 (374)
Q Consensus       235 ~~aa~~al~~~~~-~~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~l  306 (374)
                      +.++.+.+..... +++    .+.++++.+.+.+.|+..     ++....+..|.|+|++++....   ..+..++++.|
T Consensus       305 ~~~~~a~l~~~~~~~~~~~~~~~~l~~r~~~~~~~L~~~-----gi~~~~p~gg~f~w~~l~~~~~~~~~~~~~~l~~~L  379 (428)
T d1iaya_         305 QYFLAAMLSDEKFVDNFLRESAMRLGKRHKHFTNGLEVV-----GIKCLKNNAGLFCWMDLRPLLRESTFDSEMSLWRVI  379 (428)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-----TCCBCCCSSSSEEEEECGGGCSSSSHHHHHHHHHHH
T ss_pred             ccchhhhhhhhccccccccccccccchhHHHHHHHHHhC-----CCEEecCCcceEEEEECccccccCCCCCHHHHHHHH
Confidence            4443333221100 122    333344444444444332     3322223347788888864221   12455788888


Q ss_pred             HH-CCeEeccC------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          307 KE-RGILAKPT------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       307 ~~-~Gi~v~~~------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++ .||.+.|+      .++++||++. ..+++++++++++|++++.
T Consensus       380 l~~~gV~v~PG~~F~~~~~g~~Ris~a-~~~~~~l~~al~Rl~~~l~  425 (428)
T d1iaya_         380 INDVKLNVSPGSSFECQEPGWFRVCFA-NMDDGTVDIALARIRRFVG  425 (428)
T ss_dssp             HHTSCEECEEGGGGTCSSSSEEEEECS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHhCCEEEEcchhcCCCCCCEEEEEeC-CCCHHHHHHHHHHHHHHHh
Confidence            76 59999874      3789999953 3567789999999999987

>d1lc5a_ c.67.1.1 (A:) L-threonine-O-3-phosphate decarboxylase CobD {Salmonella enterica [TaxId: 28901]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: L-threonine-O-3-phosphate decarboxylase CobD
species: Salmonella enterica [TaxId: 28901]

Probab=99.95  E-value=1.7e-26  Score=211.74  Aligned_cols=288  Identities=16%  Similarity=0.170  Sum_probs=187.7

Q ss_pred             CCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcc
Q 017259           18 FYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNE   95 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~   95 (374)
                      |+++...+|++.++++++.  ++|++++|+++++..++..+       .|     +.+++..|+|+.+............
T Consensus        54 Yp~~~~~~Lr~aia~~~~v~~~~I~~~~g~~~~~~~~~~~~-------~~-----~~~~v~~p~~~~~~~~~~~~~~~~~  121 (355)
T d1lc5a_          54 YPDADYFHLHQALARHHQVPASWILAGNGETESIFTVASGL-------KP-----RRAMIVTPGFAEYGRALAQSGCEIR  121 (355)
T ss_dssp             CCCTTCHHHHHHHHHHHTSCGGGEEEESSHHHHHHHHHHHH-------CC-----SEEEEEESCCTHHHHHHHHTTCEEE
T ss_pred             CCCCChHHHHHHHHHHhCCCHHHEEecccHHHHHHHHHhhh-------cc-----ccccccCCccceeccccccccccce
Confidence            5556667899999998864  47999999988877666544       12     5556667887554433333222111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..    ++.....   +...+.+++++.   ++++++++++++|++|... +++++++|.++|++|++++|+||+|.++.
T Consensus       122 ~v----~~~~~~~---~~~~~~~~~~~~---~~~~~v~l~nP~NPtG~~~-~~e~l~~i~~~a~~~~~~li~De~y~~~~  190 (355)
T d1lc5a_         122 RW----SLREADG---WQLTDAILEALT---PDLDCLFLCTPNNPTGLLP-ERPLLQAIADRCKSLNINLILDEAFIDFI  190 (355)
T ss_dssp             EE----ECCGGGT---TCCCTTHHHHCC---TTCCEEEEESSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEECTTGGGS
T ss_pred             ee----eeeccCC---ccceeeeeeccc---cccceeeeecccCcccccc-hhhhhhhhhhhccccccccccccceeeee
Confidence            10    0000000   111233333333   6788999988899999877 89999999999999999999999999775


Q ss_pred             ccccCcccccCCCCCc---EEEeccccc-CCccchhhheeCHH-HHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hc
Q 017259          176 RSGRMLASDWEEVRPD---MVILGKALG-GGVIPVSAVLADKE-VMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EK  249 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~  249 (374)
                      ..+...... ....+.   +.|+||.++ +|+ |+||++++++ +.+.++.  ...+++.+.+++.++.++++.... .+
T Consensus       191 ~~~~~~~~~-~~~~~~~i~~~S~SK~~~l~Gl-R~G~~i~~~~~~~~~~~~--~~~~~~~~~~~~~~a~~~l~~~~~~~~  266 (355)
T d1lc5a_         191 PHETGFIPA-LKDNPHIWVLRSLTKFYAIPGL-RLGYLVNSDDAAMARMRR--QQMPWSVNALAALAGEVALQDSAWQQA  266 (355)
T ss_dssp             TTCCCSGGG-CTTCTTEEEEEESTTTTTCTTT-CCEEEECCCHHHHHHHHH--HSCTTCSCHHHHHHHHHGGGCHHHHHH
T ss_pred             eeccccccc-ccccccceeecccccccccccc-cccceeccchhhhHHHHh--hcCCccccccccccccccccccchhHH
Confidence            444332221 122223   348999999 899 9999988754 4444432  334567788888888777652110 12


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC------CCEEEE
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH------DTIVRL  323 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~------~~~lRi  323 (374)
                      .++++++..+++.+.|.+    ++ .....++.++|+|+.++.     +..++++.|.++||.++++.      ++++||
T Consensus       267 ~~~~~~~~~~~~~~~l~~----~~-~~~~~p~~~~f~~~~~~~-----~~~~~~~~L~~~gv~vr~~~~f~~~~~~~iRi  336 (355)
T d1lc5a_         267 TWHWLREEGARFYQALCQ----LP-LLTVYPGRANYLLLRCER-----EDIDLQRRLLTQRILIRSCANYPGLDSRYYRV  336 (355)
T ss_dssp             HHHHHHHHHHHHHHHHHT----ST-TEEECCCSSSEEEEEESC-----TTCCHHHHHHTTTEECEECTTSTTCCTTEEEE
T ss_pred             HHHHHHHHHHHHHHHHhh----cC-CcEECCCCCEEEEEECCC-----CHHHHHHHHHHCCcEEEeCccCCCCCCCEEEE
Confidence            233344444444444433    32 333344567888888865     34678999999999998752      589999


Q ss_pred             ecCCCCCHHHHHHHHHHHHHHH
Q 017259          324 TPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       324 ~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ++   .+++|+++++++|++++
T Consensus       337 s~---~~~~e~~~li~aL~~il  355 (355)
T d1lc5a_         337 AI---RSAAQNERLLAALRNVL  355 (355)
T ss_dssp             EC---CCHHHHHHHHHHHHHHC
T ss_pred             Ee---CCHHHHHHHHHHHHHhC
Confidence            94   37899999999998864

>d1fg7a_ c.67.1.1 (A:) Histidinol-phosphate aminotransferase HisC {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=3.2e-26  Score=209.89  Aligned_cols=285  Identities=16%  Similarity=0.197  Sum_probs=194.8

Q ss_pred             CCCCCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCcc-EEEEeccCCCCcccccccccCC
Q 017259           17 AFYNDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEA-IIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        17 ~~~~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~-~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .|+.+...+|++.|++++|.  ++|++|+|+++++..+++++     ..+|     | .|++..|+|..+...+...+..
T Consensus        52 rYPd~~~~~Lr~~ia~~~gv~pe~I~it~Gs~eai~~~~~~~-----~~pg-----d~~Vl~~~P~y~~~~~~~~~~g~~  121 (354)
T d1fg7a_          52 RYPECQPKAVIENYAQYAGVKPEQVLVSRGADEGIELLIRAF-----CEPG-----KDAILYCPPTYGMYSVSAETIGVE  121 (354)
T ss_dssp             SCCCSSCHHHHHHHHHHHTSCGGGEEEESHHHHHHHHHHHHH-----CCTT-----TCEEEECSSSCTHHHHHHHHHTCE
T ss_pred             cCCCCcHHHHHHHHHHHhCCChHHeeeccCchHHHHHHHHHh-----hccc-----cccccccccccccchhhhhccCce
Confidence            36677778999999999864  59999999999999999988     5566     6 6888899997766555554432


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...    .+...+..    .|++++++++    ++++++++++++|++|.+. +++.++.+.+.++ ++.++|+||+|.+
T Consensus       122 v~~----~~~~~~~~----~d~~~l~~~~----~~~~~v~~~~pnNPtG~~~-~~~~~~~~~~~~~-~~~~~iidd~~~~  187 (354)
T d1fg7a_         122 CRT----VPTLDNWQ----LDLQGISDKL----DGVKVVYVCSPNNPTGQLI-NPQDFRTLLELTR-GKAIVVADEAYIE  187 (354)
T ss_dssp             EEE----CCCCTTSC----CCHHHHHTSC----TTEEEEEEESSCTTTCCCC-CHHHHHHHHHHHT-TTCEEEEECTTGG
T ss_pred             eec----cccccccc----cchhhhhhcc----cccceeeccCCCccceeEe-eeccccccccccc-ccccccccccchh
Confidence            111    11111111    1677776554    3789999999999999887 7888888887776 6778888888887


Q ss_pred             CcccccCcccccCCCCCcE---EEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhc
Q 017259          174 LARSGRMLASDWEEVRPDM---VILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEK  249 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~---~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~  249 (374)
                      |.......  ......+.+   -||||.++ +|+ |+||+++++++++.+...  ...+..+.+++.++.+++..-....
T Consensus       188 f~~~~~~~--~~~~~~~~~iv~~S~SK~~~laGl-RiGy~i~~~~~i~~l~~~--~~~~~~~~~~~~~a~~~~~~~~~~~  262 (354)
T d1fg7a_         188 FCPQASLA--GWLAEYPHLAILRTLSKAFALAGL-RCGFTLANEEVINLLMKV--IAPYPLSTPVADIAAQALSPQGIVA  262 (354)
T ss_dssp             GSGGGCSG--GGTTTCTTEEEEEESSSTTCCGGG-CCEEEEECHHHHHHHHHH--SCSSCSCHHHHHHHHHHTSHHHHHH
T ss_pred             hccccccc--hhhcccccceEEeCCccccCCCcc-ccccccccchhhhhhhhh--cCccchhhHHHHHHHHHHhhhcccc
Confidence            64332221  122233333   28999999 899 999999999988888642  3455667777666655543221122


Q ss_pred             H---HHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----CCEE
Q 017259          250 L---AERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----DTIV  321 (374)
Q Consensus       250 ~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----~~~l  321 (374)
                      +   .+++++.++++.+.+.+    ++......++.++|+|+.++      +..++++.|.++||+++++.     ++++
T Consensus       263 ~~~~~~~~~~~r~~l~~~l~~----~~~~~~~~p~~~~f~~~~~~------~~~~~~~~L~~~gIlvr~~~~~~~~~~~l  332 (354)
T d1fg7a_         263 MRERVAQIIAEREYLIAALKE----IPCVEQVFDSETNYILARFK------ASSAVFKSLWDQGIILRDQNKQPSLSGCL  332 (354)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHH----STTEEEECCCSSSEEEEEET------THHHHHHHHHHTTEECEECTTSTTCTTEE
T ss_pred             ccccchhhhhHHHHHHHHHHh----CCCcceeCCCCceEEEEeCC------CHHHHHHHHHHCCcEEecCCCCCCCCCEE
Confidence            2   23333344444444333    32222233456788888776      46789999999999998753     5899


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 017259          322 RLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~  343 (374)
                      ||++   .+++|+++++++|++
T Consensus       333 Risi---gt~ee~~~~l~aLka  351 (354)
T d1fg7a_         333 RITV---GTREESQRVIDALRA  351 (354)
T ss_dssp             EEEC---CCHHHHHHHHHHHHT
T ss_pred             EEEe---CCHHHHHHHHHHHhh
Confidence            9993   488999999988863

>d1u08a_ c.67.1.1 (A:) Putative methionine aminotransferase YdbL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Putative methionine aminotransferase YdbL
species: Escherichia coli [TaxId: 562]

Probab=99.94  E-value=1.7e-26  Score=213.93  Aligned_cols=314  Identities=14%  Similarity=0.124  Sum_probs=211.8

Q ss_pred             hHHHHHHHhccc--cCcCCCCCcHHHHHHHHhcccC----CC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEE
Q 017259            2 KALQEQAEKLTL--SSRAFYNDKFPVFAERLTSMFG----YD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIV   74 (374)
Q Consensus         2 ~a~~~~~~~~~~--~~~~~~~~~~~~l~~~l~~~~~----~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi   74 (374)
                      +|+++++.+..+  ....+..++++.+++++.+.+|    .+ ++++|+|+++++..+++++     ..+|     |.|+
T Consensus        46 ~a~~~~~~~~~~~Y~~~~G~~~LReaia~~~~~~~g~~~~~~~~I~vt~G~~~al~~~~~~l-----~~~g-----d~vl  115 (382)
T d1u08a_          46 ERLAHHVAQGANQYAPMTGVQALREAIAQKTERLYGYQPDADSDITVTAGATEALYAAITAL-----VRNG-----DEVI  115 (382)
T ss_dssp             HHHHHHHHTTCCSCCCTTCCHHHHHHHHHHHHHHHSCCCCTTTTEEEESSHHHHHHHHHHHH-----CCTT-----CEEE
T ss_pred             HHHHHHHhcCCCCCCCCcCCHHHHHHHHHHHHHHhCCCCCCCceEEeccchHHHHHHHHhhc-----cccc-----ceEE
Confidence            456666665433  2223444556667777766543    33 5999999999999999988     6677     9999


Q ss_pred             EeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           75 SCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        75 ~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      +.+|+|+.................    .....   -..|++++++.+.   ++++++++++++|++|.+. +.+.+++|
T Consensus       116 ~~~p~y~~~~~~~~~~g~~~~~~~----~~~~~---~~~d~~~l~~~~~---~~~~~i~l~~P~NPtG~v~-~~~~~~~l  184 (382)
T d1u08a_         116 CFDPSYDSYAPAIALSGGIVKRMA----LQPPH---FRVDWQEFAALLS---ERTRLVILNTPHNPSATVW-QQADFAAL  184 (382)
T ss_dssp             EEESCCTTHHHHHHHTTCEEEEEE----CCTTT---CCCCHHHHHHHCC---TTEEEEEEESSCTTTCCCC-CHHHHHHH
T ss_pred             Eecccccchhhhhhhccccceecc----ccccc---ccCCHHHHhhhhc---cCccEEEECCCCccccccc-ccccchhh
Confidence            999999877655544432211110    00000   0126788877665   6899999999999999888 89999999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCccc-ccC----CCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLAS-DWE----EVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTF  228 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~-~~~----~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~  228 (374)
                      .++|+++++.++.||.|..+.+.+..... ...    +....+.++||.++ +|+ |+||+++++++.+.+........+
T Consensus       185 ~~~~~~~~~~ii~d~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~pG~-RiG~~v~~~~~~~~~~~~~~~~~~  263 (382)
T d1u08a_         185 WQAIAGHEIFVISDEVYEHINFSQQGHASVLAHPQLRERAVAVSSFGKTYHMTGW-KVGYCVAPAPISAEIRKVHQYLTF  263 (382)
T ss_dssp             HHHHTTSCCEEEEECTTTTCBCCSSCCCCGGGSHHHHTTEEEEEEHHHHTTCGGG-CCEEEECCHHHHHHHHHHHHHHTS
T ss_pred             hhhhccccceeeeecchhhccccccccccccccccccCcEEEEeeccccccCCcc-cchhhhccchhHHHHHhhhccccc
Confidence            99999999999999999854333321111 111    11112448899998 799 999999999988887755455567


Q ss_pred             CCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-
Q 017259          229 GGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-  307 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-  307 (374)
                      +.+.+.+.++..+++..  +++.+++++..+..++.+.+..... ++....+..|.++|+.++... ..+..+++++|+ 
T Consensus       264 ~~~~~~q~a~~~~l~~~--~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~~p~gg~~~~~~~~~~~-~~d~~e~~~~ll~  339 (382)
T d1u08a_         264 SVNTPAQLALADMLRAE--PEHYLALPDFYRQKRDILVNALNES-RLEILPCEGTYFLLVDYSAVS-TLDDVEFCQWLTQ  339 (382)
T ss_dssp             SCCHHHHHHHHHHHHHC--THHHHTHHHHHHHHHHHHHHHTTSS-SCEECCCCBSSEEEEECTTTC-CSCHHHHHHHHHH
T ss_pred             ccccccccccccccccc--hHHHHHHHHHHHhhhhhhhhhhccC-CcEEecCCceEEEEEecCCCC-CCCHHHHHHHHHH
Confidence            88999999988888743  3444455554444455554443322 232222334667777776421 126778999886 


Q ss_pred             HCCeEeccC--------CCCEEEEecCCCCCHHHHHHHHHHHHH
Q 017259          308 ERGILAKPT--------HDTIVRLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       308 ~~Gi~v~~~--------~~~~lRi~~~~~~~~e~i~~~~~~l~~  343 (374)
                      +.||.+.|+        +.+++||++  ..+++++++++++|++
T Consensus       340 e~gV~v~PG~~F~~~~~~~~~~Ris~--~~~~e~l~~al~RL~~  381 (382)
T d1u08a_         340 EHGVAAIPLSVFCADPFPHKLIRLCF--AKKESTLLAAAERLRQ  381 (382)
T ss_dssp             HSCEECEEGGGGCSSCCCSCEEEEEC--CSCHHHHHHHHHHHTT
T ss_pred             HCCEEEEcchhhCCCCCCCCEEEEEE--eCCHHHHHHHHHHHhC
Confidence            569999875        246899994  5688999999998865

>d1m6sa_ c.67.1.1 (A:) Low-specificity threonine aldolase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=1.1e-25  Score=204.17  Aligned_cols=321  Identities=12%  Similarity=0.081  Sum_probs=205.9

Q ss_pred             HHHHHHHhccccCc-CCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            3 ALQEQAEKLTLSSR-AFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         3 a~~~~~~~~~~~~~-~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      .+++++.+...... ++.+|...+|+++|++++|.+++++++||++|+..|++++     ...|     +.+++..+.++
T Consensus        15 ~v~~A~~~a~~g~~~yg~~p~~~~le~~lA~~~G~~~~~~~~sGt~A~~~al~a~-----~~~g-----~~~~~~~~~~~   84 (343)
T d1m6sa_          15 EMRKAMAQAEVGDDVYGEDPTINELERLAAETFGKEAALFVPSGTMGNQVSIMAH-----TQRG-----DEVILEADSHI   84 (343)
T ss_dssp             HHHHHHHTCCCCCGGGTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEETTCHH
T ss_pred             HHHHHHHhhhcCCcccCCCHHHHHHHHHHHHHHCCCeEEEeCCHHHHHHHHHHHH-----hccC-----Cceeccccccc
Confidence            45566655333222 3456788999999999999999999999999999999988     5566     88888888764


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHH
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC  158 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~  158 (374)
                      ..................     .+.... ..|++.+++.+..   +..+++.++++...++.|....+.+.+++|.++|
T Consensus        85 ~~~~~~~~~~~~~~~~~~-----~~~~~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~  158 (343)
T d1m6sa_          85 FWYEVGAMAVLSGVMPHP-----VPGKNG-AMDPDDVRKAIRPRNIHFPRTSLIAIENTHNRSGGRVVPLENIKEICTIA  158 (343)
T ss_dssp             HHSSTTHHHHHTCCEEEE-----ECEETT-EECHHHHHHHSCCSCTTSCCEEEEEEESSBTTTTSBCCCHHHHHHHHHHH
T ss_pred             eeeecccccccccceeec-----cccccC-ccCHHHHHHhhhhhhcccccccccccccccccCCceecCHHHHHHHHHHH
Confidence            433322222111111000     000000 0278888887774   2246777777777677666666899999999999


Q ss_pred             HhcCCEEEEeccccCCcccccCcccccCCCCCcEEEecccccC-CccchhhheeCHHHHhhcCCCC--CCCCCCCCHHHH
Q 017259          159 SKYNILMIADEIQSGLARSGRMLASDWEEVRPDMVILGKALGG-GVIPVSAVLADKEVMLCIQPGE--HGSTFGGNPLAS  235 (374)
Q Consensus       159 ~~~~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~--~~~~~~~~~~~~  235 (374)
                      ++||+++++|+++.++................+..+++|..+. |. +.++.....+.........  ...+........
T Consensus       159 ~~~g~~~~~D~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  237 (343)
T d1m6sa_         159 KEHGINVHIDGARIFNASIASGVPVKEYAGYADSVMFCLSKGLCAP-VGSVVVGDRDFIERARKARKMLGGGMRQAGVLA  237 (343)
T ss_dssp             HHHTCEEEEEETTHHHHHHHHCCCHHHHHHTCSEEEEESSSTTCCS-SCEEEEECHHHHHHHHHHHHHHTCCCSSTHHHH
T ss_pred             HhcCeEEEeccccccccccccccchhhhcccccccccccccccccc-ccccccccHHHHhhhHhhCcccccccchhHHHH
Confidence            9999999999999854322222221111223345566665553 44 5666777766554443221  122233333332


Q ss_pred             HHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc
Q 017259          236 AVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP  315 (374)
Q Consensus       236 ~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~  315 (374)
                      ++..  ..........+...++..++.+.+..+....  ..  .+...+++++.++...  .++.++++.|.++||++++
T Consensus       238 a~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~--~~~~~~~v~~~~~~~~--~~a~~l~~~L~~~Gi~v~~  309 (343)
T d1m6sa_         238 AAGI--IALTKMVDRLKEDHENARFLALKLKEIGYSV--NP--EDVKTNMVILRTDNLK--VNAHGFIEALRNSGVLANA  309 (343)
T ss_dssp             HHHH--HHHHHSSTTHHHHHHHHHHHHHHHHHHTCBC--CG--GGCCSSEEEEECTTSS--SCHHHHHHHHHHHTEECEE
T ss_pred             Hhhh--hhhhhhHHHHHHHHHHHHHhhhHHHHhccCc--cC--CCCCceEEEEEeCCCc--ccHHHHHHHHHHCCCEEec
Confidence            2222  2222223445666666677777776654321  11  1223567777765421  2678999999999999999


Q ss_pred             CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          316 THDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       316 ~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .+.+.+||+++..+|+||+|+++++|+++++ ++
T Consensus       310 ~~~~~iRi~~~~~~t~edid~~v~~l~~v~~-~~  342 (343)
T d1m6sa_         310 VSDTEIRLVTHKDVSRNDIEEALNIFEKLFR-KF  342 (343)
T ss_dssp             EETTEEEEECCTTSCHHHHHHHHHHHHHHHH-HH
T ss_pred             CCCCEEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            8899999999999999999999999999998 65

>d2f8ja1 c.67.1.1 (A:1-334) Histidinol-phosphate aminotransferase HisC {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Histidinol-phosphate aminotransferase HisC
species: Thermotoga maritima [TaxId: 2336]

Probab=99.93  E-value=6.2e-26  Score=206.20  Aligned_cols=273  Identities=14%  Similarity=0.095  Sum_probs=182.5

Q ss_pred             CCCCcHHHHHHHHhccc-----CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           18 FYNDKFPVFAERLTSMF-----GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~-----~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      |+.....+|.+.+++++     ..++|++|+|+++++..+++.         |     |+|++++|+|.++...+...+.
T Consensus        53 yp~~g~~~Lr~aia~~~~~~~v~~d~I~it~G~~~~l~~l~~~---------~-----d~v~i~~P~y~~~~~~~~~~g~  118 (334)
T d2f8ja1          53 YYDSPDEELIEKILSYLDTDFLSKNNVSVGNGADEIIYVMMLM---------F-----DRSVFFPPTYSCYRIFAKAVGA  118 (334)
T ss_dssp             CCCSSCHHHHHHHHHHHTCSSCCGGGEEEEEHHHHHHHHHHHH---------S-----SEEEECSSCCHHHHHHHHHHTC
T ss_pred             CCCCCcHHHHHHHHHHhcccCCCcceEEecCcchhHHHHHhhh---------c-----cccccccccccccccchhccCC
Confidence            44555566777776654     456899999999988765542         3     8999999999887666555543


Q ss_pred             CccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..             ..++++ |....    ....++++++++++++|++|.+.+    .++|.++ .++++++|+||+|
T Consensus       119 ~~-------------v~v~~~~~~~~~----~~~~~~~~~l~l~nP~NPtG~~~s----~~~l~~~-~~~~~~ii~Dd~~  176 (334)
T d2f8ja1         119 KF-------------LEVPLTKDLRIP----EVNVGEGDVVFIPNPNNPTGHVFE----REEIERI-LKTGAFVALDEAY  176 (334)
T ss_dssp             CE-------------EECCCCTTSCCC----CCCCCTTEEEEEESSCTTTCCCCC----HHHHHHH-HTTTCEEEEECTT
T ss_pred             cc-------------cccccccccccc----ccccccceEEEecccccccceeec----HHHhhcc-ccceeEEeecccc
Confidence            22             222221 10000    111246788888888999999885    4444444 5689999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEeccccc-CCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh-hc
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD-EK  249 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~-~~  249 (374)
                      .++............+...-+.|+||.++ +|+ |+||+++++++++.+....  .+++.+.+++.++.+.++..+. +.
T Consensus       177 ~~~~~~~~~~~~~~~~~~i~~~S~SK~~~~~G~-R~G~~~~~~~~i~~l~~~~--~~~~~s~~~~~~a~~~l~~~~~~~~  253 (334)
T d2f8ja1         177 YEFHGESYVDFLKKYENLAVIRTFSKAFSLAAQ-RVGYVVASEKFIDAYNRVR--LPFNVSYVSQMFAKVALDHREIFEE  253 (334)
T ss_dssp             GGGTCCCCGGGGGTCSSEEEEEESTTTSSCTTT-CEEEEEECHHHHHHHHHHS--CTTCSCHHHHHHHHHHHHTHHHHHH
T ss_pred             hhhcccccccccccCceEEEEecCccccchhhh-hhhhcccchHHHHHHHHhh--cccccchhhhhhcccccccccchhh
Confidence            75533222222111111112348999988 799 9999999999988887532  3456688888877776653211 13


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCC
Q 017259          250 LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSI  329 (374)
Q Consensus       250 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~  329 (374)
                      ..+.++++++++.+.|++++     + ...++.|.|+|+.++..    +..++++.|+++||.+++. ++++||++   .
T Consensus       254 ~~~~~~~~r~~l~~~L~~~g-----~-~~~~~~g~f~~~~~~~~----~~~~~~~~L~~~GI~vr~~-~~~vRis~---g  319 (334)
T d2f8ja1         254 RTKFIVEERERMKSALREMG-----Y-RITDSRGNFVFVFMEKE----EKERLLEHLRTKNVAVRSF-REGVRITI---G  319 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHHT-----C-EECCCCSSEEEEECCHH----HHHHHHHHHHHTTEECEEE-TTEEEEEC---C
T ss_pred             HHHHHHHHHHHHHHHHHHCC-----C-eECCCCceEEEEECCCC----CHHHHHHHHHHCCCEECCC-CCeEEEEc---C
Confidence            45556666666666666552     2 12345677888777654    6889999999999999876 78999994   4


Q ss_pred             CHHHHHHHHHHHHH
Q 017259          330 SSNELQEGSKALHD  343 (374)
Q Consensus       330 ~~e~i~~~~~~l~~  343 (374)
                      +.+|+++++++|++
T Consensus       320 ~~ee~~~l~~~l~~  333 (334)
T d2f8ja1         320 KREENDMILRELEV  333 (334)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHhc
Confidence            78889999988875

>d1elua_ c.67.1.3 (A:) Cystine C-S lyase C-des {Synechocystis sp. [TaxId: 1143]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystine C-S lyase C-des
species: Synechocystis sp. [TaxId: 1143]

Probab=99.92  E-value=2.3e-24  Score=199.42  Aligned_cols=289  Identities=14%  Similarity=0.141  Sum_probs=196.8

Q ss_pred             CCcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           20 NDKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      .+..+++++.|+++++.  +++++|+|+|++++.++..+.    .++|     ++|++.+..|++.......+....+..
T Consensus        49 ~~~~~~~r~~la~~~~~~~~~i~~~~g~t~a~~~~~~~l~----~~~g-----~~i~~~~~~~~s~~~~~~~~~~~~g~~  119 (381)
T d1elua_          49 QQLIAQLRQALAETFNVDPNTITITDNVTTGCDIVLWGLD----WHQG-----DEILLTDCEHPGIIAIVQAIAARFGIT  119 (381)
T ss_dssp             HHHHHHHHHHHHHHTTSCGGGEEEESSHHHHHHHHHHHSC----CCTT-----CEEEEETTCCHHHHHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHHHHHhCCCcccEEEECChHHHhhhcchhhh----hcCC-----ceEEEeccccceeeecccccccccccc
Confidence            34466788889998865  479999999999999887763    5677     999999999865443332221111111


Q ss_pred             ccCCCCCCCceeccCC------C-HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc----CCEEE
Q 017259           98 RGFGPLLPGHLKVDFG------D-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY----NILMI  166 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~------d-~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~----~i~li  166 (374)
                               +..++.+      + .+.+++.   ..++++++++.+++|++|.+.+    +++|.++|++|    +++++
T Consensus       120 ---------~~~v~~~~~~~~~~~~~~l~~~---i~~~t~~v~i~~~~n~tG~~~~----~~~I~~l~~~~~~~~~~~~~  183 (381)
T d1elua_         120 ---------YRFFPVAATLNQGDAAAVLANH---LGPKTRLVILSHLLWNTGQVLP----LAEIMAVCRRHQGNYPVRVL  183 (381)
T ss_dssp             ---------EEEECCGGGSSSSCHHHHHHTT---CCTTEEEEEEESBCTTTCCBCC----HHHHHHHHHHCCSSSCCEEE
T ss_pred             ---------ccccccccccccchHHHHHHhh---hcccccccccccccccccccch----hhHHHHHHhhcccccccccc
Confidence                     1122211      1 2333333   3478999999999999999999    99999999985    69999


Q ss_pred             EeccccCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCC-------------------
Q 017259          167 ADEIQSGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHG-------------------  225 (374)
Q Consensus       167 ~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~-------------------  225 (374)
                      +|.+|+ ++.    ...+.....+|++++|  |.++++. ++|++..++++.+.+.+...+                   
T Consensus       184 vD~~~~-~g~----~~~~~~~~~~D~~~~s~~K~~~~p~-G~g~l~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~  257 (381)
T d1elua_         184 VDGAQS-AGS----LPLDFSRLEVDYYAFTGHKWFAGPA-GVGGLYIHGDCLGEINPTYVGWRSITYGAKGEPTGWAEGG  257 (381)
T ss_dssp             EECTTT-BTT----BCCCTTTSCCSEEEEESSSTTCCCT-TCEEEEECTTTGGGCCCCSCCTTTEEECTTSCEEEECSGG
T ss_pred             cccccc-ccc----ccccccccccccccccccccccccc-hhhHHHhhHHHHHhcCcccccccccccccccccccccccc
Confidence            999997 221    1223334467776555  9998777 788888888887777643211                   


Q ss_pred             ---CCCCCCHHHHHHHHHHHHHHhhh----cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchh
Q 017259          226 ---STFGGNPLASAVAIASLDVIRDE----KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS  298 (374)
Q Consensus       226 ---~~~~~~~~~~~aa~~al~~~~~~----~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  298 (374)
                         .....+.....++.++++.+...    ...++.+.+.+++.+.|+++...  .+.......+.++.|.++...   .
T Consensus       258 ~~~~~gt~~~~~~~~~~~a~~~~~~~g~~~~~~~~~~~~~~~l~~~L~~~~~~--~~~~~~~~~~~~vsf~~~~~~---~  332 (381)
T d1elua_         258 KRFEVATSAYPQYAGLLAALQLHQRQGTAEERYQAICQRSEFLWRGLNQLPHV--HCLATSAPQAGLVSFTVDSPL---G  332 (381)
T ss_dssp             GGGCCSCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHSTTE--EESCSSCCSSSEEEEEECSSS---C
T ss_pred             cccccccccchhhhhhhhhhhhHHHhcccccchhhhhhHHHHHHHHHhcCCCe--EecCCCCccccEEEEEcCCCC---C
Confidence               11234666666777777766543    23455666666776766665211  012222335667777776543   5


Q ss_pred             HHHHHHHHHHCCeEeccC-CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          299 AYDICLKMKERGILAKPT-HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       299 ~~~~~~~l~~~Gi~v~~~-~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      .+++.+.|.++||.++.. .++++||+++..+|.+|+++++++|+++
T Consensus       333 ~~~i~~~L~~~gi~v~~~~~~~~lRis~~~~nt~edid~ll~~l~e~  379 (381)
T d1elua_         333 HRAIVQKLEEQRIYLRTIADPDCIRACCHYITDEEEINHLLARLADF  379 (381)
T ss_dssp             HHHHHHHHHHTTEECEEETTTTEEEEECCTTCCHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCcEEEecCCCCEEEEecCCCCCHHHHHHHHHHHHhh
Confidence            788999999999998754 4789999999999999999999988753

>d1jf9a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=4.7e-23  Score=191.86  Aligned_cols=297  Identities=14%  Similarity=0.150  Sum_probs=203.1

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..+++.++.++++.+.   +.+++++|+|++++.++..+.... ..+|     ++|++.+..||+.......+....+..
T Consensus        66 ~~~e~~R~~ia~~l~~~~~~~i~~~~~~T~~~~~~~~~~~~~~-~~~g-----~~il~~~~e~~s~~~~~~~~a~~~g~~  139 (405)
T d1jf9a_          66 EKMENVRKRASLFINARSAEELVFVRGTTEGINLVANSWGNSN-VRAG-----DNIIISQMEHHANIVPWQMLCARVGAE  139 (405)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHHHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHTCE
T ss_pred             HHHHHHHHHHHHHcCCCCcccccccCcHHHHHHHHHhcccccc-cCCC-----CEEEEEeCcccchHHHHHHHHHHcCcE
Confidence            3466778888888752   589999999999998887643221 5667     999999999988776665553322222


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ..+.|...+...    |++.+++++.   ++|+++.++.+.+.+|.+.|    +++|.++|+++|+++++|.+|+ .   
T Consensus       140 v~~~~~~~~g~~----~~~~~~~~i~---~~t~lv~~~~v~~~tG~~~p----i~~i~~~~~~~g~~~~vD~~q~-~---  204 (405)
T d1jf9a_         140 LRVIPLNPDGTL----QLETLPTLFD---EKTRLLAITHVSNVLGTENP----LAEMITLAHQHGAKVLVDGAQA-V---  204 (405)
T ss_dssp             EEEECBCTTSCB----CGGGHHHHCC---TTEEEEEEESBCTTTCCBCC----HHHHHHHHHHTTCEEEEECTTT-T---
T ss_pred             EEEECCCCCCcC----CHHHHHHhcc---CCcEEEEEecCCCcccccCc----hHHhhhHHHHcCCeeeccccee-c---
Confidence            222222111111    6777777666   78999999999999999999    9999999999999999999997 2   


Q ss_pred             ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC----------------------CCCCCHH
Q 017259          178 GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS----------------------TFGGNPL  233 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~  233 (374)
                      |. ..++.....+|++++|  |.+| +. ++|++..++++.+.+.+...+.                      ..+.+..
T Consensus       205 g~-~~id~~~~~~D~~~~s~hK~~G-p~-G~g~l~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~e~GT~~~~  281 (405)
T d1jf9a_         205 MH-HPVDVQALDCDFYVFSGHKLYG-PT-GIGILYVKEALLQEMPPWEGGGSMIATVSLSEGTTWTKAPWRFEAGTPNTG  281 (405)
T ss_dssp             TT-SCCCHHHHTCSEEEEEGGGTTS-CS-SCEEEEECHHHHTTCCCSSCSSSSEEECCTTTCCEECCTTGGGCCSSCCHH
T ss_pred             cc-cccchhhcCCceeecccccccc-CC-CceeeeechhhhcccCcccccccccCccccccccccccchhhhcCCCCcHH
Confidence            11 1222223456877665  9864 54 6788889988877665431110                      1245777


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCce-eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeE
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYV-KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGIL  312 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~  312 (374)
                      +.+++.++++.+.+.+ .+.+++....+.+.+.......+... .....++..+.|.++..    .+.++.+.|.++||.
T Consensus       282 ~~~~l~~al~~~~~~g-~~~i~~~~~~L~~~~~~~l~~~~~~~~~~~~~r~~ivsf~~~~~----~~~~~~~~L~~~gI~  356 (405)
T d1jf9a_         282 GIIGLGAALEYVSALG-LNNIAEYEQNLMHYALSQLESVPDLTLYGPQNRLGVIAFNLGKH----HAYDVGSFLDNYGIA  356 (405)
T ss_dssp             HHHHHHHHHHHHHHHC-HHHHHHHHHHHHHHHHHHHTTSTTEEEESCTTCCSEEEEEETTC----CHHHHHHHHHHTTEE
T ss_pred             HHHHHHHHHHHHHHhC-hHHHHHHHHHHHHHHHhhhhcCCcccccCCcCcCcEEEEEcCCC----CHHHHHHHHHHCCcE
Confidence            7788888888765533 23333333444444444443332111 11223355667777654    578899999999999


Q ss_pred             eccC------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          313 AKPT------------HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       313 v~~~------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++.+            .++++||+++..+|.+|+++++++|+++++
T Consensus       357 v~~G~~c~~~~~~~~~~~g~iRiS~~~ynt~eDid~l~~~l~~i~r  402 (405)
T d1jf9a_         357 VRTGHHCAMPLMAYYNVPAMCRASLAMYNTHEEVDRLVTGLQRIHR  402 (405)
T ss_dssp             CEEECTTCHHHHHHTTCSCEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             EEccchhhhhHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHHHHHH
Confidence            8743            257899999999999999999999999887

>d2e7ja1 c.67.1.9 (A:8-371) Selenocysteinyl-tRNA synthase (SepSecS) {Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Archaeoglobus fulgidus [TaxId: 2234]

Probab=99.90  E-value=1.8e-22  Score=185.13  Aligned_cols=297  Identities=14%  Similarity=0.170  Sum_probs=183.8

Q ss_pred             CcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           21 DKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ++++.+++++++++|.+.+++|+||++|+.+++.++     .++|     |+|++.+++|++....+...+.+..+.   
T Consensus        47 ~l~~~~~~~~A~~~g~e~~~~t~g~t~a~~~~~~al-----~~~g-----d~Vi~~~~~h~s~~~~~~~~g~~v~~v---  113 (364)
T d2e7ja1          47 PIHDFIHNQLPKFLGCDVARVTNGAREAKFAVMHSL-----AKKD-----AWVVMDENCHYSSYVAAERAGLNIALV---  113 (364)
T ss_dssp             CHHHHHHTHHHHHTTSSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHTTCEEEEE---
T ss_pred             HHHHHHHHHHHHHhCcCEEEEECcHHHHHHHHHHHH-----hCCC-----cEEEeecccccccchHHHhccceEEEe---
Confidence            467889999999999999999999999999999988     6778     999999999765444433222211111   


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcC--CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESG--DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSG  178 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~--~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g  178 (374)
                       |....... . -|+++++++++++.  .+++++++++++|++|.+.+    +++|.++|++||+++|+|++|+ ++..+
T Consensus       114 -~~~~~~~~-~-i~~~~l~~~i~~~~k~~~~~lv~i~~~~n~tG~~~~----l~~I~~ia~~~~i~livD~a~~-~g~~~  185 (364)
T d2e7ja1         114 -PKTDYPDY-A-ITPENFAQTIEETKKRGEVVLALITYPDGNYGNLPD----VKKIAKVCSEYDVPLLVNGAYA-IGRMP  185 (364)
T ss_dssp             -CCCCTTTC-C-CCHHHHHHHHHHHTTTSCEEEEEEESSCTTTCCCCC----HHHHHHHHHTTTCCEEEECTTT-BTTBC
T ss_pred             -eecccccc-c-cCHHHHHhhhhhhcccCCceEEEeecCCCCCceeec----chhheeccccccchhhccccch-hhhhh
Confidence             11000000 0 17899999998643  45788888899999999998    9999999999999999999997 22111


Q ss_pred             cCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCCCCC--------CCCCCHHHHHHHHHHHHHHhhh
Q 017259          179 RMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGEHGS--------TFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~aa~~al~~~~~~  248 (374)
                          ....++..|+++  ++|.++++. ++|++..++++.+.+.......        ..........+..++++...+.
T Consensus       186 ----~~~~~~g~D~~~~S~~K~~~~~g-~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  260 (364)
T d2e7ja1         186 ----VSLKEIGADFIVGSGHKSMAASG-PIGVMGMKEEWAEIVLRRSEKYKNKEVELLGCTARGATIITLMASFPHVRER  260 (364)
T ss_dssp             ----CCHHHHTCSEEEEEHHHHSSCCS-SCEEEEECTTTTTTTTCBCSSCTTSBGGGTTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             ----hcccccccceeeeccccccCCCC-CEEEEEECHHHHHHHHhhccccCcccccccccccchhHHHHHHHHHHHHHHH
Confidence                111122356664  459999766 7889999888776654321111        0111223334444555544321


Q ss_pred             --cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-----CchhHHHHHHHHHHCCeEec-cCCCCE
Q 017259          249 --KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-----LPVSAYDICLKMKERGILAK-PTHDTI  320 (374)
Q Consensus       249 --~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-----~~~~~~~~~~~l~~~Gi~v~-~~~~~~  320 (374)
                        .+.+. .++.+++.+.|+++...   .............+..+...     .......+...+...|+... ++....
T Consensus       261 ~~~~~~~-~~~~~~~~~~l~~~g~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~g~~~~  336 (364)
T d2e7ja1         261 IKRWDEE-VEKARRFAAEMEKLGIK---QLGDNPHNHDLMFFHAEVLYEISKKAKGGRFFLYRELKSRKIHGIKPGLTRY  336 (364)
T ss_dssp             GGGHHHH-HHHHHHHHHHHHHTTCE---EESSSSCCSSEEEEECHHHHHHHHHSSSGGGHHHHHHHHTTEECSCTTCCSE
T ss_pred             HHHHHHH-HHHHHHHHHHHHHcCCe---ecCCCCCCcceEEEeccchHHHHHHhhccchHHHHHHHhcCCceecCCCcce
Confidence              23333 34455566666554211   11111111122222221100     00012235556677787654 344567


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +|++ .+..+++|+++++++|+++++ +.
T Consensus       337 ~~~~-~~~~t~edid~~~~~l~ei~~-~y  363 (364)
T d2e7ja1         337 FKLS-TYGLSDEEVDYVLNAFKEIIE-KY  363 (364)
T ss_dssp             EEEE-CTTCCHHHHHHHHHHHHHHHH-HC
T ss_pred             EEEe-ccCCCHHHHHHHHHHHHHHHH-Hh
Confidence            7776 345799999999999999998 54

>d7aata_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Chicken (Gallus gallus), mitochondria [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Chicken (Gallus gallus), mitochondria [TaxId: 9031]

Probab=99.89  E-value=2.8e-23  Score=193.25  Aligned_cols=296  Identities=14%  Similarity=0.019  Sum_probs=176.9

Q ss_pred             CCCCcHHHHHHHHhccc----CCCeEEecCCh--H---HHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc
Q 017259           18 FYNDKFPVFAERLTSMF----GYDMVLPMNTG--A---EGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI   88 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~----~~~~~~~~~~g--s---~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~   88 (374)
                      +..++++.+++++.+..    ..+.++.+.++  +   +++..+++.+     ..+|     |+|++++|+|+++.....
T Consensus        72 G~~~lr~aia~~~~~~~~~~~~~~~i~~~~~~~~~g~~~~~~~~~~~l-----~~pG-----d~Vlv~~P~y~~y~~~~~  141 (401)
T d7aata_          72 GLADFTRASAELALGENSEAFKSGRYVTVQGISGTGSLRVGANFLQRF-----FKFS-----RDVYLPKPSWGNHTPIFR  141 (401)
T ss_dssp             CCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHH-----CTTC-----CEEEEEESCCTTHHHHHH
T ss_pred             CCHHHHHHHHHHHhccCCcccCcCceEEeccchHHHHHHHHHHhhHhh-----cCCC-----ceEEEecCCCcchhhHHH
Confidence            33444555555555443    23455544332  2   2333344444     6778     999999999998877766


Q ss_pred             cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEe
Q 017259           89 SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIAD  168 (374)
Q Consensus        89 ~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~D  168 (374)
                      ..+...........  ....    .+.+.+.+.+....++++++++++++||+|.+. +++.+++|.++|++||++||+|
T Consensus       142 ~~g~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~iii~~p~NPTG~~~-s~e~~~~l~~~a~~~~~~ii~D  214 (401)
T d7aata_         142 DAGLQLQAYRYYDP--KTCS----LDFTGAMEDISKIPEKSIILLHACAHNPTGVDP-RQEQWKELASVVKKRNLLAYFD  214 (401)
T ss_dssp             HTTCEEEEEECEET--TTTE----ECHHHHHHHHTTSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEE
T ss_pred             HcCCeEEEEecccc--cccc----ccHHHHHHHHhcCCCceEEEEecCCCCCccccC-CHHHHHHHHHHHhcceEEEEEe
Confidence            55543222110000  0000    167888888876667899999999999999888 8999999999999999999999


Q ss_pred             ccccCCcccccCccc----ccCCCCC---cEEEeccccc-CCccchhhheeCHHHHhhcCCC-------CCCCCCCCCHH
Q 017259          169 EIQSGLARSGRMLAS----DWEEVRP---DMVILGKALG-GGVIPVSAVLADKEVMLCIQPG-------EHGSTFGGNPL  233 (374)
Q Consensus       169 ea~~~~~~~g~~~~~----~~~~~~~---d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~  233 (374)
                      |+|.++.+.+.....    .......   .+.++||.++ .|+ |+||++++..+.+.....       ......+.+.+
T Consensus       215 e~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  293 (401)
T d7aata_         215 MAYQGFASGDINRDAWALRHFIEQGIDVVLSQSYAKNMGLYGE-RAGAFTVICRDAEEAKRVESQLKILIRPMYSNPPMN  293 (401)
T ss_dssp             ESCTTTTTSCHHHHTHHHHHHHHTTCCCEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHHHHSSCCHH
T ss_pred             ccchhhhcCCcccchhhhhhhhhhhcccceeEeccccceeecc-ccceeecchHHHHHHHHHHHHHHHHhhccccccchH
Confidence            999988655431111    1111122   2348899988 699 999998876554443211       11122344556


Q ss_pred             HHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          234 ASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       234 ~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                      .+.++...+..-.      .  +.++++++++++.+.+.|++.+..  ..... .+..|.|+|+.+        ..++++
T Consensus       294 ~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~--~~~~~~~~~~G~F~~~~l--------s~e~~~  363 (401)
T d7aata_         294 GARIASLILNTPELRKEWLVEVKGMADRIISMRTQLVSNLKKEGSS--HNWQHITDQIGMFCFTGL--------KPEQVE  363 (401)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC--SCCHHHHHCCSSEEECCC--------CHHHHH
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCcceECCCCeEEEecCC--------CHHHHH
Confidence            5555544443110      0  123334444444454545443211  01111 233455556432        235667


Q ss_pred             HHH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|+ ++||.+.|+.    ||++. ..++++++.+.++|.++++
T Consensus       364 ~L~~e~gV~~~pg~----Ris~a-~~~~~~i~~la~ai~~v~k  401 (401)
T d7aata_         364 RLTKEFSIYMTKDG----RISVA-GVASSNVGYLAHAIHQVTK  401 (401)
T ss_dssp             HHHHHHCEECCTTC----EEEGG-GCCTTTHHHHHHHHHHHHC
T ss_pred             HHHHhCCEEECCCc----EEEec-cCCHHHHHHHHHHHHHHhC
Confidence            765 5699999874    99854 3577789999999988764

>d1t3ia_ c.67.1.3 (A:) Probable cysteine desulfurase SufS {Synechocystis sp. PCC 6803 [TaxId: 1148]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Probable cysteine desulfurase SufS
species: Synechocystis sp. PCC 6803 [TaxId: 1148]

Probab=99.88  E-value=4e-21  Score=178.84  Aligned_cols=296  Identities=13%  Similarity=0.131  Sum_probs=198.9

Q ss_pred             CcHHHHHHHHhcccCC---CeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY---DMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~---~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ...++.++.+++++|.   +.+++++|++++++.++..+.... .++|     ++|++.+..|++............+..
T Consensus        66 ~~~e~aR~~ia~llga~~~~~i~~~~~tt~~~n~~~~~~~~~~-~~~g-----~~il~s~~e~~s~~~~~~~~~~~~g~~  139 (408)
T d1t3ia_          66 DAYEAVRNKVAKFINARSPREIVYTRNATEAINLVAYSWGMNN-LKAG-----DEIITTVMEHHSNLVPWQMVAAKTGAV  139 (408)
T ss_dssp             HHHHHHHHHHHHHTTCSCGGGEEEESSHHHHHHHHHHHTHHHH-CCTT-----CEEEEETTCCGGGTHHHHHHHHHHCCE
T ss_pred             HHHHHHHHHHHHHhCCCCcccEEeecchHHHHHHHHhhccccc-cCCC-----CEEEeecccchhhhhhhhhhhhccCce
Confidence            3455677888888865   458999999999998877643221 4567     999999988876655544322211111


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ....+......    .+.+.+++.+.   ++|+++.+...++.+|.+.|    +++|.++|+++|+++++|.+|+ ++  
T Consensus       140 v~~~~~~~~~~----~~~~~l~~~~~---~~t~lv~i~~~~~~tG~~~p----~~~i~~~~~~~g~~~ivDa~q~-~g--  205 (408)
T d1t3ia_         140 LKFVQLDEQES----FDLEHFKTLLS---EKTKLVTVVHISNTLGCVNP----AEEIAQLAHQAGAKVLVDACQS-AP--  205 (408)
T ss_dssp             EEEECBCTTSS----BCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHTTCEEEEECTTT-TT--
T ss_pred             Eeeeecccccc----ccHHHhhhccC---CCceEEEEecccccccccCc----HHHHhhhhhccCceeeecccee-cc--
Confidence            11111111111    16788877765   68999999999999999999    9999999999999999999997 21  


Q ss_pred             ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCC---------------------CCCCCHHH
Q 017259          178 GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGS---------------------TFGGNPLA  234 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~---------------------~~~~~~~~  234 (374)
                       . ..++.....+|++++|  |.+ |+. ++|++..++++.....+...+.                     ..+.+..+
T Consensus       206 -~-~~id~~~~~~D~~~~s~hK~~-gp~-G~g~l~v~~~~~~~~~p~~~g~~~~~~~~~~~~~~~~~~~r~e~Gt~~~~~  281 (408)
T d1t3ia_         206 -H-YPLDVQLIDCDWLVASGHKMC-APT-GIGFLYGKEEILEAMPPFFGGGEMIAEVFFDHFTTGELPHKFEAGTPAIAE  281 (408)
T ss_dssp             -T-SCCCHHHHTCSEEEEEGGGTT-SCT-TCEEEEECHHHHHHSCCCSCSTTSEEEECSSCEEECCTTGGGCCSSCCHHH
T ss_pred             -c-ccccccccCCceEEecccccc-CCC-CccccccchhhhhcCCceecCCcccccccccccccCCchhhhcCCcHHHHH
Confidence             1 1222223456887666  874 455 6788889988776665432211                     12446677


Q ss_pred             HHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee-----eEEEEeeeEEEEeccCCCchhHHHHHHHH
Q 017259          235 SAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK-----EVRGRGLFNAVEFDKTALPVSAYDICLKM  306 (374)
Q Consensus       235 ~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~~~~~~~~~~~l  306 (374)
                      .+++.++++.+.+.   ++.++...+.+++.+.++.    .+....     .....+.++.|.++..    ++.++.+.|
T Consensus       282 ~~~l~~al~~~~~~g~~~i~~~~~~l~~~l~~~~~~----~~~~~~~~~~~~~~~~~~iv~f~~~~~----~~~~v~~~L  353 (408)
T d1t3ia_         282 AIALGAAVDYLTDLGMENIHNYEVELTHYLWQGLGQ----IPQLRLYGPNPKHGDRAALASFNVAGL----HASDVATMV  353 (408)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHT----CTTEEEESCCGGGSCBCSEEEEEETTB----CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHhHHhhhhcc----CccccccCCCccccCcceEEEEEeCCC----CHHHHHHHH
Confidence            77777778776553   3444454555555444433    322211     1112355666666654    688899999


Q ss_pred             HHCCeEeccC------------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          307 KERGILAKPT------------HDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       307 ~~~Gi~v~~~------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      .++||.++.+            .++++||+++..+|++|++++++.|+++++ .+
T Consensus       354 ~~~gI~v~~G~~c~~~~~~~~~~~g~vRiS~~~ynt~~did~li~~L~~~~~-~f  407 (408)
T d1t3ia_         354 DQDGIAIRSGHHCTQPLHRLFDASGSARASLYFYNTKEEIDLFLQSLQATIR-FF  407 (408)
T ss_dssp             HTTTEECBCSCTTCHHHHHHTTCCCCEEEECCTTCCHHHHHHHHHHHHHHHH-HT
T ss_pred             hhCCcEEecCcccccHHHHhhcCCccEEEECCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence            9999998753            257899999999999999999999999998 54

>d1h0ca_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1e-21  Score=181.73  Aligned_cols=299  Identities=15%  Similarity=0.144  Sum_probs=202.6

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+.+++.++.|++++|.+   .++|+.|||++++.++..+     ..+|     +++++...++++............. 
T Consensus        51 ~~i~~ea~~~l~~llg~~~~~~ii~~gsgT~a~~~~i~~l-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~-  119 (388)
T d1h0ca_          51 YQIMDEIKEGIQYVFQTRNPLTLVISGSGHCALEAALVNV-----LEPG-----DSFLVGANGIWGQRAVDIGERIGAR-  119 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSEEEEESSCHHHHHHHHHHHH-----CCSS-----CCEEECBSSHHHHHHHHHHHHHC---
T ss_pred             HHHHHHHHHHHHHHhCCCCCcEEEEcCcHHHHHHHHHHHh-----hccC-----Cceeeecccceeeeecccccccccc-
Confidence            456788999999988764   5899999999999999988     5566     8888887766554322211110000 


Q ss_pred             cccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc
Q 017259           97 IRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR  176 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~  176 (374)
                           ............|.+.+++.+.+.  +++++.+....+.+|.+.|    +++|.++|++||+++++|.+++ ++ 
T Consensus       120 -----~~~~~~~~~~~~~~~~~~~~~~~~--~~~~v~~~~~~n~tG~i~p----i~~i~~~~~~~g~~~~vD~~qs-~g-  186 (388)
T d1h0ca_         120 -----VHPMTKDPGGHYTLQEVEEGLAQH--KPVLLFLTHGESSTGVLQP----LDGFGELCHRYKCLLLVDSVAS-LG-  186 (388)
T ss_dssp             -----CBCCBCCTTCCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHTTTCEEEEECTTT-TT-
T ss_pred             -----ccccccCCccccchHHHHHHhccC--CcceEEEeeeeeccccccC----HHHHHHHhhcccccceeccccc-cc-
Confidence                 000000000011677777776654  6778888889999999999    9999999999999999999997 21 


Q ss_pred             cccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC-----------------------CCCCCCCC
Q 017259          177 SGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE-----------------------HGSTFGGN  231 (374)
Q Consensus       177 ~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~-----------------------~~~~~~~~  231 (374)
                        . ..++...+..|+.++|  |+++|.. .+|+++.++...+.+....                       ......++
T Consensus       187 --~-~~~d~~~~~~D~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  262 (388)
T d1h0ca_         187 --G-TPLYMDRQGIDILYSGSQKALNAPP-GTSLISFSDKAKKKMYSRKTKPFSFYLDIKWLANFWGCDDQPRMYHHTIP  262 (388)
T ss_dssp             --T-SCCCTTTTTCSEEEEESSSTTCCCT-TCEEEEECHHHHHHHTTCSSCCSCSTTCHHHHHHHTTCSSSCCCCCSCCC
T ss_pred             --c-ccccccccccceecccccccccCCC-ceEEEeecHHHHHhhhhccccccccccccchhhhhhhhcccccccccccc
Confidence              1 1223334556777665  8888655 5677778877666554210                       11122456


Q ss_pred             HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          232 PLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .....+..++++.+.+.   .+.++.+.+.+++++.+.......  ...+ ......++.|.+++..   +..++.+.|.
T Consensus       263 ~~~~~~~~~al~~~~~~g~~~~~~~~~~l~~~l~~~~~~~g~~~--~~~~~~~rs~~i~~~~~p~~~---~~~~~~~~L~  337 (388)
T d1h0ca_         263 VISLYSLRESLALIAEQGLENSWRQHREAAAYLHGRLQALGLQL--FVKDPALRLPTVTTVAVPAGY---DWRDIVSYVI  337 (388)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB--SSCSGGGBCTTEEEEECCTTC---CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhccccccccccchhHHHHHHHhhcCccc--ccCCHHHcCCeEEEEECCCCC---CHHHHHHHHH
Confidence            66777777777776553   455666667777777777664321  1111 2223456677776554   7889999997


Q ss_pred             HC-CeEeccC----CCCEEEEe-cCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          308 ER-GILAKPT----HDTIVRLT-PPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       308 ~~-Gi~v~~~----~~~~lRi~-~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      ++ ||.++.+    .++.|||+ +++.++.+|+++++++|+++++ ++.+.
T Consensus       338 ~~~gI~v~~G~~~~~~~~iRis~~g~~~t~edid~li~aL~~~L~-~l~k~  387 (388)
T d1h0ca_         338 DHFDIEIMGGLGPSTGKVLRIGLLGCNATRENVDRVTEALRAALQ-HCPKK  387 (388)
T ss_dssp             HHHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH-HSCCC
T ss_pred             hcCCEEEeCCchhhcCCEEEEeCCCCCCCHHHHHHHHHHHHHHHH-Hhccc
Confidence            76 9998875    35799998 7788899999999999999999 88653

>d1ajsa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Pig (Sus scrofa), cytosolic form [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Pig (Sus scrofa), cytosolic form [TaxId: 9823]

Probab=99.88  E-value=2e-22  Score=188.13  Aligned_cols=303  Identities=10%  Similarity=0.065  Sum_probs=183.1

Q ss_pred             CCCcHHHHHHHHhccc----C----CC--eEEecCChHHHHHHHHHHHHHc--ccccccCCCCccEEEEeccCCCCcccc
Q 017259           19 YNDKFPVFAERLTSMF----G----YD--MVLPMNTGAEGVETALKLARKW--GYVKKKFSIDEAIIVSCCGCFHGRTLA   86 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~----~----~~--~~~~~~~gs~a~~~al~~~~~~--~~~~~G~~~~~~~vi~~~~~yhg~~~~   86 (374)
                      +.....+|++.+++++    +    .+  .++.+.+++.++..+...+...  ....+|     |+|++++|+|..+...
T Consensus        72 p~~G~p~lreaia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~pG-----d~Vlv~~P~y~~y~~~  146 (412)
T d1ajsa_          72 PILGLAEFRTCASRLALGDDSPALQEKRVGGVQSLGGTGALRIGAEFLARWYNGTNNKD-----TPVYVSSPTWENHNGV  146 (412)
T ss_dssp             CTTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHHHSSSSSCCC-----SCEEEEESCCTHHHHH
T ss_pred             CCCCCHHHHHHHHHHHhccCCcccccccceeecccchhhHHHHHHHHHHHHhhhcCCCC-----CEEEEeCCcchhhHHH
Confidence            3444455555555543    2    23  3567778888887777666432  125677     9999999999777666


Q ss_pred             cccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEE
Q 017259           87 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMI  166 (374)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li  166 (374)
                      ....+........+... ....    .|++.+++.+....++++++++++++||||.+. +++.+++|+++|++||++||
T Consensus       147 ~~~~G~~~v~~~~~~~~-~~~~----~d~~~~~~~~~~~~~~~~~il~~~P~NPTG~v~-s~e~~~~i~~la~~~~~~ii  220 (412)
T d1ajsa_         147 FTTAGFKDIRSYRYWDT-EKRG----LDLQGFLSDLENAPEFSIFVLHACAHNPTGTDP-TPEQWKQIASVMKRRFLFPF  220 (412)
T ss_dssp             HHHTTCSCEEEEECEET-TTTE----ECHHHHHHHHHHSCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEE
T ss_pred             HHHcCCeEEEeeccccc-cccc----ccHHHHHHHHHhccCCcEEEEecCCCCCcCCCC-CHHHHHHHHHHHhhCCEEEE
Confidence            66555432211110000 0000    167777777776667889999999999999877 99999999999999999999


Q ss_pred             EeccccCCcccccC---ccc-ccCCCCC---cEEEeccccc-CCccchhhheeCHHHHhhcC-------CCCCCCCCCCC
Q 017259          167 ADEIQSGLARSGRM---LAS-DWEEVRP---DMVILGKALG-GGVIPVSAVLADKEVMLCIQ-------PGEHGSTFGGN  231 (374)
Q Consensus       167 ~Dea~~~~~~~g~~---~~~-~~~~~~~---d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~-------~~~~~~~~~~~  231 (374)
                      +||+|.++.+.+..   +.. .......   -+.++||.++ .|+ |+||+++.....+.+.       ........+.+
T Consensus       221 ~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  299 (412)
T d1ajsa_         221 FDSAYQGFASGNLEKDAWAIRYFVSEGFELFCAQSFSKNFGLYNE-RVGNLTVVAKEPDSILRVLSQMQKIVRVTWSNPP  299 (412)
T ss_dssp             EEESCTTTTTSCHHHHTHHHHHHHHTTCCEEEEEECTTTSCCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCC
T ss_pred             ecHhhhhhhcCCcccchhhhhhhhhhcccccccccccccccCCCC-CccccccchhHHHHHHHHHHHHHHHhhccccccc
Confidence            99999987655421   111 1111111   2347889988 599 9999887644333221       11122334556


Q ss_pred             HHHHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceee-EEEEeeeEEEEeccCCCchhHHHH
Q 017259          232 PLASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKE-VRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       232 ~~~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      .+++.++...+....      +  +.+.++++++++.+.+.|+.....  ..... ....|.|.|+.+       +. ++
T Consensus       300 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~~l~~~L~~~~~~--~~~~~i~~~~G~F~~~~l-------s~-~~  369 (412)
T d1ajsa_         300 AQGARIVARTLSDPELFHEWTGNVKTMADRILSMRSELRARLEALKTP--GTWNHITDQIGMFSFTGL-------NP-KQ  369 (412)
T ss_dssp             SHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS--SCCHHHHHCCSSEEECCC-------CH-HH
T ss_pred             hHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCeeeecCCCeEEEecCC-------CH-HH
Confidence            666665555443110      1  123344445555555555443211  11111 122344444321       23 44


Q ss_pred             HHHHH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          303 CLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       303 ~~~l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      +++|+ ++||++.|+.    ||++. ..++++++.++++|+++++ ++
T Consensus       370 v~~L~~e~gV~~vpg~----Ri~~a-g~~~~~i~~~a~aI~~av~-~~  411 (412)
T d1ajsa_         370 VEYLINQKHIYLLPSG----RINMC-GLTTKNLDYVATSIHEAVT-KI  411 (412)
T ss_dssp             HHHHHHTTCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHHH-HC
T ss_pred             HHHHHHhCCEEEeCCC----eEEec-cCCHHHHHHHHHHHHHHHH-hc
Confidence            55664 6699999875    99843 2567889999999999998 65

>d1p3wa_ c.67.1.3 (A:) Cysteine desulfurase IscS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cysteine desulfurase IscS
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=1.3e-21  Score=181.27  Aligned_cols=288  Identities=15%  Similarity=0.181  Sum_probs=180.5

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      .+++++++++++|.+  +|++++|+|++++.++..+.... .++|     ++|++.++.|++.......+... +     
T Consensus        50 ~~~~R~~iA~~lg~~~~~I~~~~~~t~~l~~~~~~~~~~~-~~~g-----d~Vv~~~~~~~s~~~~~~~~~~~-G-----  117 (391)
T d1p3wa_          50 VDIARNQIADLVGADPREIVFTSGATESDNLAIKGAANFY-QKKG-----KHIITSKTEHKAVLDTCRQLERE-G-----  117 (391)
T ss_dssp             HHHHHHHHHHHHTCCGGGEEEESSHHHHHHHHHHHHHHHH-GGGC-----CEEEEETTSCHHHHHHHHHHHHT-T-----
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHHHHhhhhhhh-cCCC-----CEEEEeccccchHHHHHHHHHHc-C-----
Confidence            445777888888665  89999999999999988775332 5677     99999999987654433322111 1     


Q ss_pred             CCCCCCceeccCC-----CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259          101 GPLLPGHLKVDFG-----DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus       101 ~~~~~~~~~~~~~-----d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                          ..+..++.+     |+++++++++   ++|++++++.++|++|.+.|    +++|.++|++||+++++|.+|+ ++
T Consensus       118 ----~~v~~v~~~~~~~~d~~~~~~~i~---~~T~lv~is~~~n~tG~~~~----~~~I~~~~~~~~~~~ivD~~~~-~g  185 (391)
T d1p3wa_         118 ----FEVTYLAPQRNGIIDLKELEAAMR---DDTILVSIMHVNNEIGVVQD----IAAIGEMCRARGIIYHVDATQS-VG  185 (391)
T ss_dssp             ----CEEEEECCCTTSCCCHHHHHHHCC---TTEEEEECCSBCTTTCCBCC----HHHHHHHHHHHTCEEEEECTTT-BT
T ss_pred             ----CEEEEeCCCCCCeEcHHHHHHhCC---CCcEEEEEECCCCCCeeECC----HHHHHHHhccCCcEEEEeeccc-cC
Confidence                112222221     6888888887   78999999999999999999    9999999999999999999997 21


Q ss_pred             ccccCcccccCCCCCcEEE--ecccccCCccchhhheeCHHHHhhcCCCCCCC-------CCCCCHHHHHHHHHHHHHHh
Q 017259          176 RSGRMLASDWEEVRPDMVI--LGKALGGGVIPVSAVLADKEVMLCIQPGEHGS-------TFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s--~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~aa~~al~~~~  246 (374)
                      .  .  ..+.....+|+.+  ..|.+| +. ++|++..+++......+...+.       ....+.....+...+++...
T Consensus       186 ~--~--~~d~~~~~~D~~~~s~~k~~g-~~-g~g~~~~~~~~~~~~~~~~~gg~~~~~~~~~~~~~~~~~~l~~~~~~~~  259 (391)
T d1p3wa_         186 K--L--PIDLSQLKVDLMSFSGHKIYG-PK-GIGALYVRRKPRVRIEAQMHGGGHERGMRSGTLPVHQIVGMGEAYRIAK  259 (391)
T ss_dssp             T--B--CCCTTTSCCSEEEEESTTTTS-CS-SCEEEEECBTTBCCCCCSSCSSCTTTTTSCSCCCHHHHHHHHHHHHHHH
T ss_pred             C--c--cccchhccccccccccccccC-CC-ceEEEEEecchhcccCCcccCCccccCcccCcchhhhhhhhhhhhhHHH
Confidence            1  1  2222334566654  447754 43 5677778777666655433221       12223333333333333322


Q ss_pred             hh--cHHHHHHHHHHHHHHHHHHHHHhCCCcee--eEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-----
Q 017259          247 DE--KLAERSAHLGEELRQHLFKIQQQFPNYVK--EVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-----  317 (374)
Q Consensus       247 ~~--~~~~~~~~~~~~~~~~l~~~~~~~~~~~~--~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-----  317 (374)
                      +.  ...+++++..+++.+.|..+...   .+.  ........+.+.++..    ...++...|.  ++.++.+.     
T Consensus       260 ~~~~~~~~~~~~~~~~l~~~L~~~~~~---~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~l~--~i~v~~G~~c~~~  330 (391)
T d1p3wa_         260 EEMATEMERLRGLRNRLWNGIKDIEEV---YLNGDLEHGAPNILNVSFNYV----EGESLIMALK--DLAVSSGSACTSA  330 (391)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTTSTTE---EECSCTTTSCTTEEEEEETTS----CHHHHHHHTT--TEECBCCCC----
T ss_pred             HHhhHHHHHHHHHHHHHHHHHHhhcCe---eecccccccCceEEEEEeCCC----ChHHHHHHhC--CCEEEccccccCC
Confidence            21  22344444444444444333211   010  0111233344445443    5667777664  44443210     


Q ss_pred             ------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          318 ------------------DTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       318 ------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                                        .+++||+++..+|++|+++++++|+++++ +++
T Consensus       331 ~~~~~~~l~~~g~~~~~~~g~iRiS~~~~nt~edid~l~~~l~~~l~-~lr  380 (391)
T d1p3wa_         331 SLEPSYVLRALGLNDELAHSSIRFSLGRFTTEEEIDYTIELVRKSIG-RLR  380 (391)
T ss_dssp             --CCCHHHHHHTCCHHHHHTEEEEECCTTCCHHHHHHHHHHHHHHHH-HHH
T ss_pred             ccchhHHHHHcCCCccccCCEEEEecCCCCCHHHHHHHHHHHHHHHH-HHH
Confidence                              25799999999999999999999999998 664

>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase) {Proteus vulgaris [TaxId: 585]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Proteus vulgaris [TaxId: 585]

Probab=99.88  E-value=8.6e-22  Score=186.67  Aligned_cols=324  Identities=16%  Similarity=0.111  Sum_probs=191.2

Q ss_pred             CCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccc
Q 017259           19 YNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIR   98 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~   98 (374)
                      .++...+|++++++++|.+++++++||++|++.|++++++++ .+.|.+  +..++.  +.+|+.+..+...........
T Consensus        73 ~~~~~~~le~~~a~l~g~~~~~~~~sGt~A~~~a~~~~~~~g-~~~~~~--~~~~i~--~~~h~~t~~~~~~~~g~~~~~  147 (465)
T d1ax4a_          73 GSRNYYDLKDKAKELFNYDYIIPAHQGRGAENILFPVLLKYK-QKEGKA--KNPVFI--SNFHFDTTAAHVELNGCKAIN  147 (465)
T ss_dssp             SCHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHHHH-HHTTCC--SSCEEE--ESSCCHHHHHHHHHTTCEEEE
T ss_pred             cChHHHHHHHHHHHHHCCCEEEECCCcHHHHHHHHHHHHHHH-HhcCCC--CCeEEe--ccchhhhhHHHHHHcCCeeec
Confidence            366678899999999999999999999999999999998775 223311  133333  345554433322211111100


Q ss_pred             cCCCCC---CCceeccC-CCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           99 GFGPLL---PGHLKVDF-GDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        99 ~~~~~~---~~~~~~~~-~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      ...+..   ........ .|+++++++|+... +.++++++++.++.+|+.+++.+++++|.++|++||+++|+|++|..
T Consensus       148 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~~~~~~~~~~g~~~~~~~~l~~i~~~~~~~g~~l~~D~~~~~  227 (465)
T d1ax4a_         148 IVTEKAFDSETYDDWKGDFDIKKLKENIAQHGADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFC  227 (465)
T ss_dssp             CBCGGGGCTTSCCTTTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccCCCCCCCCccCccCHHHHHHHHHhhccccccceeeccccccCceecCCHHHHHHHHHHHHHcCCEEEEECcchh
Confidence            000000   00000011 18999999998754 46788888888888888888999999999999999999999999862


Q ss_pred             ------CcccccCcccccCC------CCCcEEEecccccCCccchhhheeCHH--HHhhcC----CCCCCCCC-CCCHHH
Q 017259          174 ------LARSGRMLASDWEE------VRPDMVILGKALGGGVIPVSAVLADKE--VMLCIQ----PGEHGSTF-GGNPLA  234 (374)
Q Consensus       174 ------~~~~g~~~~~~~~~------~~~d~~s~sK~~~~G~~~~G~~~~~~~--~~~~~~----~~~~~~~~-~~~~~~  234 (374)
                            .++.+..+.....+      -..|++++||..+++.-+.|+++.++.  +.....    ......++ .....+
T Consensus       228 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~k~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  307 (465)
T d1ax4a_         228 ENAYFIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVTYGGLAGRD  307 (465)
T ss_dssp             HHHHHHHHHCGGGTTCCHHHHHHHHGGGCSEEEEETTSTTCCSSCEEEEESSCHHHHHHHHHHHHHHTCSTTTTTCCHHH
T ss_pred             hhhcccccccccccccchhhhccccccccceeEeecccCcccccceeEeecchHHHHHhhhccccccccCCCcchhhHHH
Confidence                  11111111111111      124788888877653315566666542  222211    11122233 334444


Q ss_pred             HHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec----cCCC-chh-HHHHHHHHHH
Q 017259          235 SAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD----KTAL-PVS-AYDICLKMKE  308 (374)
Q Consensus       235 ~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~-~~~-~~~~~~~l~~  308 (374)
                      ..++...+.....+++.++..++.+++.+.|++....   .+...  .+....+...    .... ... .....+.+.+
T Consensus       308 ~~a~~~~~~e~~~~~~~~~~~~~~~~l~~~L~~~g~~---~v~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll~~  382 (465)
T d1ax4a_         308 MAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIP---IQYPT--GGHAVFVDCKKLVPQIPGDQFPAQAVINALYLE  382 (465)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTCC---BCSSC--CSSEEEEESTTTCTTSCGGGCHHHHHHHHHHHH
T ss_pred             HHHHhhhhHHhhhHHHHHHHHHHHHHHHHHHHhhcCc---cccCC--CcceeeeehhhhcCCCccccchhHHHHHHHHHh
Confidence            4444444443333456677777788888888876422   23222  2222322221    1110 112 2334555567


Q ss_pred             CCeEecc-----------------CCCCEEEEec-CCCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          309 RGILAKP-----------------THDTIVRLTP-PLSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       309 ~Gi~v~~-----------------~~~~~lRi~~-~~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      .||.+..                 ...+.+|+++ ....|+||+|+++++|+++++ +...++
T Consensus       383 ~GI~~~~~~~~~~~~~~~~g~~~~~~~~~vRlalP~~~~T~eeiD~vv~~l~~v~~-~~~~i~  444 (465)
T d1ax4a_         383 SGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARRVYTNDHMDYIADALIGLKE-KFATLK  444 (465)
T ss_dssp             HCEECEEESHHHHCBCTTTCSBCCCSCCEEEEECCTTSSCHHHHHHHHHHHHTTHH-HHTTCC
T ss_pred             cCceeccccccccccccccCCccCCCCCceEEeCCCCCCCHHHHHHHHHHHHHHHH-HHHhcc
Confidence            7887532                 1246899974 467799999999999999987 665544

>d3tata_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Escherichia coli [TaxId: 562]

Probab=99.88  E-value=5.1e-23  Score=191.24  Aligned_cols=317  Identities=10%  Similarity=0.049  Sum_probs=186.9

Q ss_pred             hHHHHHHHhccc----cCcCCCCCcHHHHHHHHhccc--------CCCeEEecCChHHHHHHHHHHHHHcccccccCCCC
Q 017259            2 KALQEQAEKLTL----SSRAFYNDKFPVFAERLTSMF--------GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSID   69 (374)
Q Consensus         2 ~a~~~~~~~~~~----~~~~~~~~~~~~l~~~l~~~~--------~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~   69 (374)
                      ++++++...+..    ...+.+.....+|++.+++++        ..++++.+.+++.+...++.++.... ..+|    
T Consensus        47 ~~V~~A~~~l~~~~~~~~~Y~p~~G~~~lR~aia~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~pg----  121 (397)
T d3tata_          47 QAVAEAEARLNAQPHGASLYLPMEGLNCYRHAIAPLLFGADHPVLKQQRVATIQTLGGSGALKVGADFLKR-YFPE----  121 (397)
T ss_dssp             HHHHHHHHHHTTSCCSSBCCCCTTCCHHHHHHHHHHHTCSSCHHHHTTCEEECCBSHHHHHHHHHHHHHHH-HCSS----
T ss_pred             HHHHHHHHHHHhCcccCCCCCCcccCHHHHHHHHHHHhhccCCcCCcCcEEEecCchhHHHHHHHHHHhhh-cCCC----
Confidence            456666544321    111233444555555555543        24567777766665554444332211 5677    


Q ss_pred             ccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChh
Q 017259           70 EAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDG  149 (374)
Q Consensus        70 ~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~  149 (374)
                       |+|++++|+|.++.......+......    |+..+..  ...|.+++.+.+...+++++++++++++||||.+. |++
T Consensus       122 -d~Vlv~~P~y~~y~~~~~~~G~~~~~v----~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~p~NPTG~~~-s~~  193 (397)
T d3tata_         122 -SGVWVSDPTWENHVAIFAGAGFEVSTY----PWYDEAT--NGVRFNDLLATLKTLPARSIVLLHPCCHNPTGADL-TND  193 (397)
T ss_dssp             -CCCEECSSCCTTHHHHHHTTTCCCEEC----CCCCTTT--SSCCHHHHHHHHTTCCSSCCCEECSSSCSSSCCCC-CHH
T ss_pred             -CcceecccCccccHHHHHHcCCEEEEE----ecchhhc--cccchHHHHHHhhhcccccEEEEecCCCCCCCeeC-CHH
Confidence             999999999988877776655432221    1111111  11267777777776667888899999999999877 999


Q ss_pred             HHHHHHHHHHhcCCEEEEeccccCCcccccCc--cc-ccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcC--
Q 017259          150 YLKAVRDLCSKYNILMIADEIQSGLARSGRML--AS-DWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQ--  220 (374)
Q Consensus       150 ~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~--~~-~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~--  220 (374)
                      .+++|.++|++||++||+||+|.++.+.+...  .. ...+....   +.++||.++ .|+ |+||++++....+...  
T Consensus       194 ~~~~l~~~a~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~~~~~~~  272 (397)
T d3tata_         194 QWDAVIEILKARELIPFLDIAYQGFGAGMEEDAYAIRAIASAGLPALVSNSFSKIFSLYGE-RVGGLSVMCEDAEAAGRV  272 (397)
T ss_dssp             HHHHHHHHHHHTTCCCEECBSCTTSSSCHHHHHHHHHHHHTTTCCCEECBCCHHHHTBTTT-CCBCCEEECSSTTHHHHH
T ss_pred             HHHHHHHHHhhcCeeEEeehhhhhhccCCcccchhhhhhhhcCCceEEEecCcccccccCc-cccccccchhHHHHHHHH
Confidence            99999999999999999999999875544221  11 11122222   338899988 599 9999987654433222  


Q ss_pred             -----CCCCCCCCCCCHHHHHHHHHHHHHHhh-hcHHHHHHHHHHHHHHHHHHHHHhCC----Cc-e-eeEEEEeeeEEE
Q 017259          221 -----PGEHGSTFGGNPLASAVAIASLDVIRD-EKLAERSAHLGEELRQHLFKIQQQFP----NY-V-KEVRGRGLFNAV  288 (374)
Q Consensus       221 -----~~~~~~~~~~~~~~~~aa~~al~~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~----~~-~-~~~~~~g~~~~~  288 (374)
                           ........+.+.+.+.++...+..-.. ..+.++++...++++.+.+.+...+.    +. . ...+..|.|.|+
T Consensus       273 ~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~~~~~~~~~~G~F~~~  352 (397)
T d3tata_         273 LGQLKATVRRNYSSPPNFGAQVVAAVLNDEALKASWLAEVEEMRTRILAMRQELVKVLSTEMPERNFDYLLNQRGMFSYT  352 (397)
T ss_dssp             HHHHHHHTTTTTSSCCSHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTCTTSCTTHHHHCCSSBCCC
T ss_pred             HHHHHHHhhcccccccHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCceEEEcCCCceEEec
Confidence                 112333445556666655544432111 12333333333433333333332221    11 1 112345666665


Q ss_pred             EeccCCCchhHHHHHHHHHH-CCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          289 EFDKTALPVSAYDICLKMKE-RGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       289 ~~~~~~~~~~~~~~~~~l~~-~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .++        .+++++|++ .||++.++.    ||+++ ..++++++.++++|++++
T Consensus       353 ~ls--------~e~~~~L~~e~~V~l~~g~----Ri~~a-~~~~~~i~~~~~ai~~v~  397 (397)
T d3tata_         353 GLS--------AAQVDRLREEFGVYLIASG----RMCVA-GLNTANVQRVAKAFAAVM  397 (397)
T ss_dssp             CCC--------HHHHHHHTTTTCEECCSSS----CCBTT-SCCTTTHHHHHHHHHHHC
T ss_pred             CcC--------HHHHHHHHHhCCEEeCCCC----EEEec-cCCHHHHHHHHHHHHHhC
Confidence            332        356777765 599998874    88854 357788999999988763

>d1yaaa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Baker's yeast (Saccharomyces cerevisiae), cytosolic form [TaxId: 4932]

Probab=99.87  E-value=4.5e-22  Score=185.55  Aligned_cols=298  Identities=11%  Similarity=0.100  Sum_probs=182.0

Q ss_pred             CCcHHHHHHHHhccc----C----CCeE--EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccc
Q 017259           20 NDKFPVFAERLTSMF----G----YDMV--LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~----~----~~~~--~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .....+|.+.+++++    +    .+.+  ..+.++..++..++.....   ..+|     |.|++++|+|..+......
T Consensus        72 ~~G~~~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~g-----d~Vlip~P~~~~y~~~~~~  143 (412)
T d1yaaa_          72 ITGLPSLTSNAAKIIFGTQSDALQEDRVISVQSLSGTGALHISAKFFSK---FFPD-----KLVYLSKPTWANHMAIFEN  143 (412)
T ss_dssp             TTCCHHHHHHHHHHHHCTTCHHHHTTCEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCTTHHHHHHT
T ss_pred             CCCCHHHHHHHHHHHhcccCccccccceeEEecccchhHHHHHHHHHhc---cCCC-----CEEecccccCchhHHHHHH
Confidence            444555655555543    2    2222  2233444444444333321   5577     9999999999887766655


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      .+...........  ....    .+.+.+++.+...++.++++++++++||||.+. +++.+++|.++|+++++++|+||
T Consensus       144 ~g~~~~~~~~~~~--~~~~----~~~~~~~~~~~~~~~~~~~i~i~~P~NPTG~~~-s~~~~~~i~~~a~~~~~~ii~De  216 (412)
T d1yaaa_         144 QGLKTATYPYWAN--ETKS----LDLNGFLNAIQKAPEGSIFVLHSCAHNPTGLDP-TSEQWVQIVDAIASKNHIALFDT  216 (412)
T ss_dssp             TTCCEEEEECEET--TTTE----ECHHHHHHHHHHSCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHTTCEEEEEE
T ss_pred             cCCceeccccccc--cccc----ccchhhhcccccCCCceEEEEecCCCCCccccC-CHHHHHHHHhhhccCCEEEeecc
Confidence            5443222110000  0000    167788888887767888999999999999877 89999999999999999999999


Q ss_pred             cccCCcccccCc-c------cccCCCCCc---EEEeccccc-CCccchhhheeCHHHHhhcC-----------CCCCCCC
Q 017259          170 IQSGLARSGRML-A------SDWEEVRPD---MVILGKALG-GGVIPVSAVLADKEVMLCIQ-----------PGEHGST  227 (374)
Q Consensus       170 a~~~~~~~g~~~-~------~~~~~~~~d---~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~-----------~~~~~~~  227 (374)
                      +|.++.+.+... .      .......+.   +.|+||.++ .|+ |+||++++.++...+.           .......
T Consensus       217 ~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~~i~~~s~SK~~~~~G~-RiG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  295 (412)
T d1yaaa_         217 AYQGFATGDLDKDAYAVRLGVEKLSTVSPVFVCQSFAKNAGMYGE-RVGCFHLALTKQAQNKTIKPAVTSQLAKIIRSEV  295 (412)
T ss_dssp             SCTTTSSSCHHHHTHHHHHHHHHTTTTCCEEEEEECTTTSCCGGG-CEEEEEEECCSCTTHHHHHHHHHHHHHHHHHTTT
T ss_pred             eeeecccCCcccchhhhhhhhhccccCCCeEEEEecCCccccCcC-ceEEEEEchhhhhhHHHHHHHHHHHHHHHHHHHh
Confidence            999886654311 1      011222233   338999999 699 9999988754332211           1112344


Q ss_pred             CCCCHHHHHHHHHHHHHHh------h--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEE-EeeeEEEEeccCCCchh
Q 017259          228 FGGNPLASAVAIASLDVIR------D--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRG-RGLFNAVEFDKTALPVS  298 (374)
Q Consensus       228 ~~~~~~~~~aa~~al~~~~------~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~  298 (374)
                      .+.+.+++.++...+..-.      .  +.+.+.++++++.+.+.|++.+..  .......+ .|.|.|+.+       +
T Consensus       296 ~~~~~~~q~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~r~~l~~~L~~~g~~--~~~~~~~~~gG~F~~~~l-------s  366 (412)
T d1yaaa_         296 SNPPAYGAKIVAKLLETPELTEQWHKDMVTMSSRITKMRHALRDHLVKLGTP--GNWDHIVNQCGMFSFTGL-------T  366 (412)
T ss_dssp             SSCCHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS--SCCTHHHHCCSSEEECCC-------C
T ss_pred             cCCChHHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--CCCceeCCCceEEEecCc-------C
Confidence            5667778777766654211      1  134455555666666666554321  11111223 344444322       2


Q ss_pred             HHHHHHHHH-HCCeEeccCCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          299 AYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       299 ~~~~~~~l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                       .+++++|+ +.||++.++.    ||++. ..+++.++.++++|+++++ ..
T Consensus       367 -~e~~~~L~~e~~V~~~~g~----Ris~~-g~~~~~i~~l~~ai~~v~k-~~  411 (412)
T d1yaaa_         367 -PQMVKRLEETHAVYLVASG----RASIA-GLNQGNVEYVAKAIDEVVR-FY  411 (412)
T ss_dssp             -HHHHHHHHHHHCEECCTTS----EEEGG-GCCTTTHHHHHHHHHHHHH-HC
T ss_pred             -HHHHHHHHHhCCEEECCCC----EEEec-cCCHHHHHHHHHHHHHHHH-hh
Confidence             35677775 5699998874    99854 2567789999999999987 54

>d1mdoa_ c.67.1.4 (A:) Aminotransferase ArnB {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase ArnB
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.87  E-value=9.4e-22  Score=181.26  Aligned_cols=305  Identities=14%  Similarity=0.150  Sum_probs=199.9

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++.+.++.    .+..++||++|++++|.+.+++++|||+|+.+|++++.    .++|     |+|++++.+|+
T Consensus        16 ~~~~~~~~~~~~~~----G~~v~~~E~~la~~~g~~~ai~~~sgt~Al~~al~al~----~~~g-----deVi~~~~~~~   82 (376)
T d1mdoa_          16 AAVKTVLDSGWITT----GPKNQELEAAFCRLTGNQYAVAVSSATAGMHIALMALG----IGEG-----DEVITPSMTWV   82 (376)
T ss_dssp             HHHHHHHHHTCCSS----SHHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCH
T ss_pred             HHHHHHHhcCCCcC----CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHhC----CCCC-----CEEEEeccccc
Confidence            46677777765543    56788999999999999999999999999999998874    6778     99999999987


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      +........+..+.+.        ++..-.+ .|+++|+++++   ++|+++++.+..   |...+    +++|.++|++
T Consensus        83 ~~~~ai~~~g~~pv~~--------d~~~~~~~~d~~~l~~~i~---~~tkaIi~~h~~---G~~~~----~~~i~~i~~~  144 (376)
T d1mdoa_          83 STLNMIVLLGANPVMV--------DVDRDTLMVTPEHIEAAIT---PQTKAIIPVHYA---GAPAD----LDAIYALGER  144 (376)
T ss_dssp             HHHHHHHHTTCEEEEE--------CBCTTTCCBCHHHHHHHCC---TTEEEECCBCGG---GCCCC----HHHHHHHHHH
T ss_pred             ccccchhccccceeee--------cccccccCCCHHHHHHhcC---CCCeEEEEeCCC---CCccc----hhHHHHHHHh
Confidence            7666665555444332        1211111 28999999987   579999987655   55566    9999999999


Q ss_pred             cCCEEEEeccccCCc-ccccCcccccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCC--------------
Q 017259          161 YNILMIADEIQSGLA-RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPG--------------  222 (374)
Q Consensus       161 ~~i~li~Dea~~~~~-~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~--------------  222 (374)
                      ||++||+|.+|+-.. ..+..  ....+  ..+.||+  |.++.|-  +|.++.+ +++.+.++..              
T Consensus       145 ~~i~vIeD~a~a~g~~~~~~~--~g~~g--~~~~Sf~~~K~l~~g~--GG~i~t~~~~l~~~~~~~~~~g~~~~~~~~~~  218 (376)
T d1mdoa_         145 YGIPVIEDAAHATGTSYKGRH--IGARG--TAIFSFHAIKNITCAE--GGIVVTDNPQFADKLRSLKFHGLGVDAWDRQS  218 (376)
T ss_dssp             HTCCBCEECTTCTTCEETTEE--TTSSS--EEEEECCTTSSSCSSS--CEEEEESCHHHHHHHHHHTBTTEECC------
T ss_pred             cCceEEeccchhccCeeCCee--ccccc--CccccCCCcCCCCCCC--CCEEEEechhHHHHHHhhcccCCccccccccc
Confidence            999999999998211 11111  11111  1344554  8887543  3445554 5555544211              


Q ss_pred             ----------CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHh-CCCceeeEEEEeeeEEEEec
Q 017259          223 ----------EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQ-FPNYVKEVRGRGLFNAVEFD  291 (374)
Q Consensus       223 ----------~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~g~~~~~~~~  291 (374)
                                ..+.++.++.+.++.+...++.+  +++.++.++..+++.+.|+.+... .+............+.+.++
T Consensus       219 ~~~~~~~~~~~~g~n~~~~~~~Aai~~~qL~~~--~~~~~~r~~~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (376)
T d1mdoa_         219 GGRAPQAEVLAPGYKYNLPDLNAAIALAQLQKL--DALNARRAAIAAQYHQAMADLPFQPLSLPSWEHIHAWHLFIIRVD  296 (376)
T ss_dssp             -----CCEESSCCCBCCCCHHHHHHHHHHHHTH--HHHHHHHHHHHHHHHHHHHTSSCEECCCCSSCEECCCSCEEEECC
T ss_pred             ccccccccchhcccccccchhhhhhhhhhhhhh--hHHHHHHhhhhhhhhhhcccccccccccccccccccccccccccc
Confidence                      12344566777777777666654  345677777777777777654321 11011111111122222222


Q ss_pred             cCCCchhHHHHHHHHHHCCeEeccC-------------------------CCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          292 KTALPVSAYDICLKMKERGILAKPT-------------------------HDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       292 ~~~~~~~~~~~~~~l~~~Gi~v~~~-------------------------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      ....+.+.+++.++|.++||.++..                         ....+.+-.+..++++|++++++.|++++
T Consensus       297 ~~~~~~~Rd~l~~~L~~~gI~~~~~y~~~~~~~~~~~~~~~~~~p~a~~~~~~~i~LP~~~~lt~~ei~~I~~~i~~i~  375 (376)
T d1mdoa_         297 EARCGITRDALMASLKTKGIGTGLHFRAAHTQKYYRERFPTLTLPDTEWNSERICSLPLFPDMTESDFDRVITALHQIA  375 (376)
T ss_dssp             HHHHSSCHHHHHHHHHHTTBCCBCCCCCGGGSHHHHHHSTTCCCHHHHHHHTTEEEECCCTTCCHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHHHHHHHCCCCeeeECcchhcCHHHHhhCCCCCCHHHHHHHhCEEEccCCCCCCHHHHHHHHHHHHHHh
Confidence            1110114578999999999987531                         14668887777889999999999999875

>d2q7wa1 c.67.1.1 (A:1-396) Aspartate aminotransferase, AAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aspartate aminotransferase, AAT
species: Escherichia coli [TaxId: 562]

Probab=99.86  E-value=4.3e-22  Score=184.84  Aligned_cols=277  Identities=13%  Similarity=0.087  Sum_probs=168.9

Q ss_pred             EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCCCceeccCCCHHHH
Q 017259           39 VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITAL  118 (374)
Q Consensus        39 ~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~l  118 (374)
                      ++.+.+++.+...++..+..   ..+|     |.|++++|+|..+.......+...........  .+..    .+...+
T Consensus        97 ~~~~~~~~~~~~l~~~~l~~---~~~g-----d~Vlvp~P~y~~y~~~~~~~g~~~~~~~~~~~--~~~~----~~~~~~  162 (396)
T d2q7wa1          97 TAQTPGGTGALRVAADFLAK---NTSV-----KRVWVSNPSWPNHKSVFNSAGLEVREYAYYDA--ENHT----LDFDAL  162 (396)
T ss_dssp             EEEESHHHHHHHHHHHHHHH---HSCC-----CEEEEEESCCTHHHHHHHHTTCEEEEEECEET--TTTE----ECHHHH
T ss_pred             eeccchHHHHHHHHHHHHhh---cccc-----eEEEEecCCCccchHHHHHcCCeeEecccccc--cccc----cccchH
Confidence            34566666666655544422   4566     99999999998877776655543322211110  0000    146666


Q ss_pred             HHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccCcc--cc----cCCCCCcE
Q 017259          119 EKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRMLA--SD----WEEVRPDM  192 (374)
Q Consensus       119 e~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~~~--~~----~~~~~~d~  192 (374)
                      ++.+....++++++++++++||||.+. +++.+++|.++|++|+++||+||+|.++.+.+....  ..    .......+
T Consensus       163 ~~~~~~~~~~~~~i~~~~P~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~~~~~~~~~~~~~~~~~~~~~~  241 (396)
T d2q7wa1         163 INSLNEAQAGDVVLFHGCCHNPTGIDP-TLEQWQTLAQLSVEKGWLPLFDFAYQGFARGLEEDAEGLRAFAAMHKELIVA  241 (396)
T ss_dssp             HHHHTTCCTTCEEEEECSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEESCTTSSSCHHHHTHHHHHHHHHCSCEEEE
T ss_pred             HHHHHHhccCcEEEEecCCcCCcCeec-CHHHHHHHHHHHhcCCeEEEEeccccccccCCccCchHhhhhhhhccccccc
Confidence            666666667788999999999999877 899999999999999999999999998865443211  11    11112223


Q ss_pred             EEeccccc-CCccchhhheeCHHHHhhcCCC-------CCCCCCCCCHHHHHHHHHHHHH------Hhh--hcHHHHHHH
Q 017259          193 VILGKALG-GGVIPVSAVLADKEVMLCIQPG-------EHGSTFGGNPLASAVAIASLDV------IRD--EKLAERSAH  256 (374)
Q Consensus       193 ~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~aa~~al~~------~~~--~~~~~~~~~  256 (374)
                      .++||.++ .|+ |+||++++....+.....       ......+.+.+.+.++...+..      +.+  +.+.+++++
T Consensus       242 ~s~sk~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  320 (396)
T d2q7wa1         242 SSYSKNFGLYNE-RVGACTLVAADSETVDRAFSQMKAAIRANYSNPPAHGASVVATILSNDALRAIWEQELTDMRQRIQR  320 (396)
T ss_dssp             EECTTTTTCGGG-CCEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHTSHHHHHHHHHHHHHC-CHHHH
T ss_pred             ccccccccccCC-CccccccchhHHHHHHHhhhhhhhhhhccccCCCHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHH
Confidence            47899988 699 999998876544433211       1122234455555554444321      111  123445555


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEeccCCCCEEEEecCCCCCHHHHH
Q 017259          257 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAKPTHDTIVRLTPPLSISSNELQ  335 (374)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~~~~~~~lRi~~~~~~~~e~i~  335 (374)
                      +++.+.+.|+..+... ......+..|.|.|+.++        .+++++|+ +.||++.+++    ||++. ..++++++
T Consensus       321 ~r~~l~~~L~~~~~~~-~~~~~~~~~G~F~~~~l~--------~e~~~~L~~e~gV~~~~g~----Ri~~a-~l~~~~i~  386 (396)
T d2q7wa1         321 MRQLFVNTLQEKGANR-DFSFIIKQNGMFSFSGLT--------KEQVLRLREEFGVYAVASG----RVNVA-GMTPDNMA  386 (396)
T ss_dssp             HHHHHHHHHHHTTCCS-CCTHHHHCCSSEEECCCC--------HHHHHHHHHHHCEECCTTC----EEEGG-GCCTTTHH
T ss_pred             HHHHHHHHHHHhCCCC-CcceecCCCeEEEeeCCC--------HHHHHHHHHhCCEEECCCC----EEEec-CCCHHHHH
Confidence            5566666555543110 011112345666664332        35567776 5699998875    99854 34677899


Q ss_pred             HHHHHHHHHH
Q 017259          336 EGSKALHDVL  345 (374)
Q Consensus       336 ~~~~~l~~~~  345 (374)
                      +++++|++++
T Consensus       387 ~~~~ai~~v~  396 (396)
T d2q7wa1         387 PLCEAIVAVL  396 (396)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHhC
Confidence            9999998763

>d2hoxa1 c.67.1.1 (A:1-425) Alliinase {Garlic (Allium sativum) [TaxId: 4682]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Alliinase
species: Garlic (Allium sativum) [TaxId: 4682]

Probab=99.86  E-value=1.6e-21  Score=180.85  Aligned_cols=283  Identities=9%  Similarity=-0.017  Sum_probs=179.6

Q ss_pred             CcHHHHHHHHhccc---C-----CCeEEecCChHHHHHHHHHHHHHcc---cccccCCCCccEEEEeccCCCCccccccc
Q 017259           21 DKFPVFAERLTSMF---G-----YDMVLPMNTGAEGVETALKLARKWG---YVKKKFSIDEAIIVSCCGCFHGRTLAAIS   89 (374)
Q Consensus        21 ~~~~~l~~~l~~~~---~-----~~~~~~~~~gs~a~~~al~~~~~~~---~~~~G~~~~~~~vi~~~~~yhg~~~~~~~   89 (374)
                      .+..+|++.++++.   |     .++|++++|+++++++++.++....   ...+|     ++|+++.|+|..+......
T Consensus       100 ~~~~~L~~~i~~lh~~~gna~t~~~~IvvG~Gsteli~~~~~AL~~~~~~~~~~pg-----~~Vv~~~P~y~~Y~~~~~~  174 (425)
T d2hoxa1         100 FISFELEKTIKELHEVVGNAAAKDRYIVFGVGVTQLIHGLVISLSPNMTATPDAPE-----SKVVAHAPFYPVFREQTKY  174 (425)
T ss_dssp             TCCHHHHHHHHHHHHHHTCBCCTTCEEEEESHHHHHHHHHHHHHSCCTTTCTTSCC-----EEEEECSSCCHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHhhhCCCCCCCCEEEECCCHHHHHHHHHHHhccccccccCCCC-----CEEEEecCccccHHHHHHH
Confidence            34467888888864   2     2369999999999999999984211   12455     9999999999766544333


Q ss_pred             ccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           90 MSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      +.+..          .++..    |.+.++++++   ++++++++++++||+|.+..           +..+++.+|.||
T Consensus       175 ~~~~~----------~~~~~----D~~~~~~~~~---~~~~ii~l~sPnNPtG~l~~-----------~v~~~~~~I~DE  226 (425)
T d2hoxa1         175 FDKKG----------YVWAG----NAANYVNVSN---PEQYIEMVTSPNNPEGLLRH-----------AVIKGCKSIYDM  226 (425)
T ss_dssp             SCBTT----------EEEEE----EGGGGTTCSC---GGGEEEEEESSCTTTCCCCC-----------CSSTTCEEEEEC
T ss_pred             cCCCC----------CccCC----CHHHHHhhCC---CCceEEEEECCCCCCcchhh-----------hhhhCCEEEEec
Confidence            32211          01111    5666655544   57899999999999997642           234789999999


Q ss_pred             cccCCcccccCcccccCCCCCcEEEeccccc-CCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          170 IQSGLARSGRMLASDWEEVRPDMVILGKALG-GGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       170 a~~~~~~~g~~~~~~~~~~~~d~~s~sK~~~-~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      +|.+..+..  +. ....-..-+.||||.++ +|+ |+||+++ ++.+.+.+.......+++.+.++|.++.++++....
T Consensus       227 aY~~~~f~~--~~-~~~~~~Ivl~S~SK~fglaGl-RiGw~i~~~~~i~~~~~~~~~~~~~~vs~~~Q~aa~~aL~~~~~  302 (425)
T d2hoxa1         227 VYYWPHYTP--IK-YKADEDILLFTMSKFTGHSGS-RFGWALIKDESVYNNLLNYMTKNTEGTPRETQLRSLKVLKEVVA  302 (425)
T ss_dssp             TTCSTTTSC--CC-SCBCCSEEEEEHHHHTSCGGG-CCEEEEECCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHHHH
T ss_pred             cccCccccc--hh-hhcCCeEEEEeCHHhccCcch-heeeEEeCCHHHHHHHHHhhccCcccCCHHHHHHHHHHhhccHH
Confidence            996431111  11 11111111338999999 799 9999665 566766666544445677899999999888875321


Q ss_pred             ---------hcHHHH----HHHHHHHHHHHHHHHHHh-C---CC------ceeeEEEEeeeEEEEeccCCCchhHHHHHH
Q 017259          248 ---------EKLAER----SAHLGEELRQHLFKIQQQ-F---PN------YVKEVRGRGLFNAVEFDKTALPVSAYDICL  304 (374)
Q Consensus       248 ---------~~~~~~----~~~~~~~~~~~l~~~~~~-~---~~------~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~  304 (374)
                               .++.+.    ++++.+++++.|++.... +   |.      ......+.+.+.|+.+...    ....+.+
T Consensus       303 ~~~~~~~~~~~~~~~~~~~l~~r~~~l~~~L~~~~~~~l~~~p~~~~~~f~~~~~~~~~~f~wl~~~~~----~~~~~~~  378 (425)
T d2hoxa1         303 MVKTQKGTMRDLNTFGFKKLRERWVNITALLDQSDRFSYQELPQSEYCNYFRRMRPPSPSYAWVKCEWE----EDKDCYQ  378 (425)
T ss_dssp             HHHHHTTSTTSHHHHHHHHHHHHHHHHHHHHTTSSSEECCCCCSCEEETTTTEEECCCCSEEEEEECSG----GGCSHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCceeeccCCccceeeeeeccCCCcceeeeeCCCC----hHHHHHH
Confidence                     123333    333333333333332110 0   00      0012234455677666432    2334556


Q ss_pred             HHHHCCeEeccC-----CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          305 KMKERGILAKPT-----HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       305 ~l~~~Gi~v~~~-----~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      .|.++||.++|+     +++++||+  +..+++++++++++|+++++
T Consensus       379 lL~e~gI~v~pGs~FG~~~~yvRis--l~~~~e~ld~~l~rL~~~v~  423 (425)
T d2hoxa1         379 TFQNGRINTQNGVGFEASSRYVRLS--LIKTQDDFDQLMYYLKDMVK  423 (425)
T ss_dssp             HHHHTTEECEEGGGGTSCTTEEEEE--CSSCHHHHHHHHHHHHHHHT
T ss_pred             HHHhCCEEEEechhcCCCCCEEEEE--ecCCHHHHHHHHHHHHHHHh
Confidence            678899999985     36899999  66789999999999999987

>d2aeua1 c.67.1.8 (A:9-374) Hypothetical protein MJ0158 {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SelA-like
domain: Hypothetical protein MJ0158
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.86  E-value=4.7e-21  Score=175.68  Aligned_cols=285  Identities=11%  Similarity=0.036  Sum_probs=166.7

Q ss_pred             HHHHHHhccc---CCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEE-e-ccCCCCcccccccccCCcccccc
Q 017259           25 VFAERLTSMF---GYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVS-C-CGCFHGRTLAAISMSCDNEAIRG   99 (374)
Q Consensus        25 ~l~~~l~~~~---~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~-~-~~~yhg~~~~~~~~~~~~~~~~~   99 (374)
                      ++++...+.+   ..+.++.++|+++|+..++.++     .+ |     +.+++ . .|+|...... ..+.        
T Consensus        54 ~l~~~~~~~~~~~~~e~~~~~~~~~~a~~~~l~al-----~~-~-----~~vi~~~~~~~~~~~~~~-~~l~--------  113 (366)
T d2aeua1          54 KVNEYGLKHLGGDENDKCVGFNRTSSAILATILAL-----KP-K-----KVIHYLPELPGHPSIERS-CKIV--------  113 (366)
T ss_dssp             HHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHH-----CC-S-----EEEEECSSSSCCTHHHHH-HHHT--------
T ss_pred             HHHHHHHHHccCCCccEEEEeCCHHHHHHHHHHHh-----CC-C-----CEEEEecCCCcchhHHHH-HHhc--------
Confidence            3444444434   3457999999999999999876     32 3     45444 3 3454333322 2222        


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcc--c
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLAR--S  177 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~--~  177 (374)
                            ++.+++++|+++++++++   ++|++++++++.|+++.   +...+++|+++|++||+++|+||+|+...+  .
T Consensus       114 ------g~~~v~~~d~e~l~~~i~---~~tk~i~~~~p~n~~~~---~~~~l~~i~~ia~~~~~~~i~De~y~~~~~~~~  181 (366)
T d2aeua1         114 ------NAKYFESDKVGEILNKID---KDTLVIITGSTMDLKVI---ELENFKKVINTAKNKEAIVFVDDASGARVRLLF  181 (366)
T ss_dssp             ------TCEEEEESCHHHHHTTCC---TTEEEEEECBCTTSCBC---CHHHHHHHHHHHHHHTCCEEEECTTHHHHHHHT
T ss_pred             ------CCeEECCCCHHHHHHhcC---CCceEEEEEecCCCCcC---CHHHHHHHHHHhccCcEEEEEecCccccccccc
Confidence                  233445568999988877   68999999987665432   455699999999999999999999973211  1


Q ss_pred             ccCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHH--
Q 017259          178 GRMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAER--  253 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~--  253 (374)
                      +.+.. ...  ..|++  |+||.+ +|+ ++||+++++++++.++.......++.+++.+.++.++++.+.-..+.++  
T Consensus       182 ~~~~~-~~~--~~di~~~S~sK~~-~g~-~~G~i~~~~~~i~~~~~~~~~~g~~~~~~~~~a~~~aL~tl~~~r~~~~~~  256 (366)
T d2aeua1         182 NQPPA-LKL--GADLVVTSTDKLM-EGP-RGGLLAGKKELVDKIYIEGTKFGLEAQPPLLAGIYRALKNFNLERIRKAFE  256 (366)
T ss_dssp             TCCCH-HHH--TCSEEEEETTSSS-SSC-SCEEEEEEHHHHHHHHHHHHTTTCBCCHHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred             cCCCH-hhc--CceEEEecccccc-ccc-ceeEEEecHHHHHHHHHHHhcccccCCHHHHHHHHHHHHhccHHHHHHHHH
Confidence            11111 112  34566  555655 478 9999999999999887654555667788888888888875422222222  


Q ss_pred             -HHHHHHHHHHHHHHHHHhCCCceeeE-EEEee-eEEEEeccCCC--chhHHHHHHHHHHC-CeEeccC-----CCCEEE
Q 017259          254 -SAHLGEELRQHLFKIQQQFPNYVKEV-RGRGL-FNAVEFDKTAL--PVSAYDICLKMKER-GILAKPT-----HDTIVR  322 (374)
Q Consensus       254 -~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~-~~~~~~~~~~~--~~~~~~~~~~l~~~-Gi~v~~~-----~~~~lR  322 (374)
                       .++....+.+.+......++...... ...+. +++........  .....+++..|+++ ||.+.|+     ..+++|
T Consensus       257 ~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~Ll~~~gV~~ip~~~~p~~~~~lR  336 (366)
T d2aeua1         257 RAKNFDLSKIEKLNKELKAIDDNINIVYERTPTGFVIKRVYKDDTINIKKLIEIGFNLLKNYGIITITVAGMPGASKSLR  336 (366)
T ss_dssp             HHHHCCCHHHHHHHHHHTTTCTTEEEEEEECSSEEEEEEEESSHHHHHHHHHHHHHHHHHHHCEECSTTSSSCSSCCSEE
T ss_pred             HHHHHHHHHHhhhhccccccccccCcccccCccchhccCCCcceeecccCHHHHHHHHHHhCCEEEEECCCCCCCCCEEE
Confidence             22222334444444333332222222 22222 22322222110  12355688888765 9998764     357999


Q ss_pred             EecCCCCCHH-HHHHHHHHHHHHHh
Q 017259          323 LTPPLSISSN-ELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~~~~~~e-~i~~~~~~l~~~~~  346 (374)
                      |++....+++ +.+++.+++.+.++
T Consensus       337 is~~~~~~~~i~~d~l~~ai~~~lK  361 (366)
T d2aeua1         337 IDLTSRDAERIDDNYIIKAIVESIK  361 (366)
T ss_dssp             EETTSGGGGGSCHHHHHHHHHHHHH
T ss_pred             EeccccchhhCCHHHHHHHHHHHHH
Confidence            9965432211 23444444444443

>d1m32a_ c.67.1.3 (A:) 2-aminoethylphosphonate transaminase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 2-aminoethylphosphonate transaminase
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.85  E-value=5.5e-20  Score=168.21  Aligned_cols=295  Identities=13%  Similarity=0.119  Sum_probs=188.8

Q ss_pred             CCCcHHHHHHHHhcccCCC--e--EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cCC
Q 017259           19 YNDKFPVFAERLTSMFGYD--M--VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCD   93 (374)
Q Consensus        19 ~~~~~~~l~~~l~~~~~~~--~--~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~~   93 (374)
                      ..+.+++..++|++++|.+  +  +++++|||++++.++..+     ..++     +.+++....+++........ ...
T Consensus        31 ~~~~~~~~r~~l~~l~~~~~~~~~i~~t~s~T~~~~~~~~~l-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  100 (361)
T d1m32a_          31 NIGVVEQIRQQLTALATASEGYTSVLLQGSGSYAVEAVLGSA-----LGPQ-----DKVLIVSNGAYGARMVEMAGLMGI  100 (361)
T ss_dssp             HTTTHHHHHHHHHHHHCSSSSEEEEEEESCHHHHHHHHHHHS-----CCTT-----CCEEEEESSHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHhCCCCCCEEEEECCCHHHHHHHHHHHh-----hhhc-----cccceeeehhhhhhHHHHhhhhhc
Confidence            4578899999999988764  3  788899999999988877     3334     55555544433322221111 111


Q ss_pred             ccccccCCCCCCCceeccC--CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           94 NEAIRGFGPLLPGHLKVDF--GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~--~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ....          ...+.  ......+.......++++.+.+..+.+.+|.+.|    +++|.++|++||+++++|.+|
T Consensus       101 ~~~~----------~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~tG~~~~----i~~i~~~~~~~g~~~~vDa~q  166 (361)
T d1m32a_         101 AHHA----------YDCGEVARPDVQAIDAILNADPTISHIAMVHSETTTGMLNP----IDEVGALAHRYGKTYIVDAMS  166 (361)
T ss_dssp             CEEE----------EECCTTSCCCHHHHHHHHHHCTTCCEEEEESEETTTTEECC----HHHHHHHHHHHTCEEEEECTT
T ss_pred             cccc----------ccccccCCccchhhHHHHHhccCccceEEEeeecccccchh----hhhhhhhhcccceeeEeeccc
Confidence            0000          00000  0112222223333368999999999999999999    999999999999999999999


Q ss_pred             cCCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC------------------CCCCCCC
Q 017259          172 SGLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH------------------GSTFGGN  231 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~------------------~~~~~~~  231 (374)
                      + ++   . ..++......|+.++|  |+++|.. ++|++..+++..+...+...                  ...+.++
T Consensus       167 s-~G---~-~~~d~~~~~~D~~~~s~~K~l~gp~-G~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~  240 (361)
T d1m32a_         167 S-FG---G-IPMDIAALHIDYLISSANKCIQGVP-GFAFVIAREQKLAACKGHSRSLSLDLYAQWRCMEDNHGKWRFTSP  240 (361)
T ss_dssp             T-TT---T-SCCCTTTTTCSEEEEESSSTTCCCS-SEEEEEEEHHHHTTCTTCCSCSTTCHHHHHHHHHHTTTCCSSCCC
T ss_pred             c-cC---c-ccccccccccceEEeeecccccCCC-CceEEEechhhhhhhccccccccccchhhhccccccccccCCCCC
Confidence            8 21   1 1233345567888776  8888766 67888889888877765421                  2234567


Q ss_pred             HHHHHHHHHHHHHHhhhcHHHH----HHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          232 PLASAVAIASLDVIRDEKLAER----SAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      .....+...+++....+.....    .+...+.+++.++......  ..........++.+.++... ..+..++++.|.
T Consensus       241 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~~~~~~rs~~v~~~~~p~~~-~~~~~~~~~~l~  317 (361)
T d1m32a_         241 THTVLAFAQALKELAKEGGVAARHQRYQQNQRSLVAGMRALGFNT--LLDDELHSPIITAFYSPEDP-QYRFSEFYRRLK  317 (361)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHTTCCB--SSCGGGBCSSEEEEECCCCT-TCCHHHHHHHHH
T ss_pred             chhhhHHHHHHHHHHHhcchhhhHHHHHHHHHHHHHHHhhcCCcc--cCChhhcCCcEEEEECCCCC-CCCHHHHHHHHH
Confidence            7777777777776655543333    3444444444444433221  11111122344556555321 125788999999


Q ss_pred             HCCeEeccC---CCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKPT---HDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++||.+.++   .++.+||+....++++|+++++++|+++|-
T Consensus       318 ~~gi~i~~G~~~~~~~~Ris~~g~~~~~di~~lv~al~~~L~  359 (361)
T d1m32a_         318 EQGFVIYPGKVSQSDCFRIGNIGEVYAADITALLTAIRTAMY  359 (361)
T ss_dssp             HTTEECEECCCSSSCEEEEECCSSCCHHHHHHHHHHHHHHCT
T ss_pred             HCCcEEECCCcCCCCEEEEeCCCCCCHHHHHHHHHHHHHHcC
Confidence            999999764   367899985435799999999999998863

>d1v72a1 c.67.1.1 (A:6-350) Phenylserine aldolase PSALD {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Phenylserine aldolase PSALD
species: Pseudomonas putida [TaxId: 303]

Probab=99.85  E-value=1.4e-20  Score=170.03  Aligned_cols=310  Identities=12%  Similarity=0.016  Sum_probs=175.2

Q ss_pred             HHHHHHh--ccccCcCCCCCcHHHHHHHHhcccCCC-eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCC
Q 017259            4 LQEQAEK--LTLSSRAFYNDKFPVFAERLTSMFGYD-MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCF   80 (374)
Q Consensus         4 ~~~~~~~--~~~~~~~~~~~~~~~l~~~l~~~~~~~-~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~y   80 (374)
                      +.+++.+  ..+...++.++..+++++++++++|.+ .++|++|||+|++.++..++     ..+     +.+++.... 
T Consensus        19 v~~A~~~a~~~~~~~~~~~~~~~~l~~~la~~~g~~~~v~f~~sGt~An~~a~~~~~-----~~~-----~~~~~~~~~-   87 (345)
T d1v72a1          19 VAQALVKHSSGQAGPYGTDELTAQVKRKFCEIFERDVEVFLVPTGTAANALCLSAMT-----PPW-----GNIYCHPAS-   87 (345)
T ss_dssp             HHHHHHHTTSSCCCSTTCSHHHHHHHHHHHHHHTSCCEEEEESCHHHHHHHHHHTSC-----CTT-----EEEEECTTS-
T ss_pred             HHHHHHHHhccCccccCCCHHHHHHHHHHHHHHCCCcEEEECCchHHHHHHHHHHHH-----hcC-----Ccccccccc-
Confidence            3444444  233444567788889999999999987 57899999999999998773     334     555544433 


Q ss_pred             CCcccccc---cccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcC---CcEEEEEEccccCCCCcccCChhHHHHH
Q 017259           81 HGRTLAAI---SMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESG---DQIAGFLFEPIQGEAGVIIPPDGYLKAV  154 (374)
Q Consensus        81 hg~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~---~~~~~vi~~~~~~~~g~~~~~~~~l~~l  154 (374)
                      |.......   ..++. .+..      .........+++++++.+....   ..+...+++...++.+....+.++++++
T Consensus        88 ~~~~~~~~~~~~~~~~-~~~~------~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i  160 (345)
T d1v72a1          88 HINNDECGAPEFFSNG-AKLM------TVDGPAAKLDIVRLRERTREKVGDVHTTQPACVSITQATEVGSIYTLDEIEAI  160 (345)
T ss_dssp             HHHHSSTTHHHHHTTS-CEEE------ECCCGGGCCCHHHHHHHTTSSTTCTTSCEEEEEEEESSCTTSCCCCHHHHHHH
T ss_pred             ceeeechhhHHHhcCc-cccc------ccccccccccHHHhhhhhcccccccccccceeeeeeccccccccccchhhhhH
Confidence            22211111   11111 0000      0001111137888888887421   2345555555555544455578899999


Q ss_pred             HHHHHhcCCEEEEeccccCCcccccCcccccC--CCCCcEEEecccccCCccchhhhee-CHHHHhhcCCC--CCCCCCC
Q 017259          155 RDLCSKYNILMIADEIQSGLARSGRMLASDWE--EVRPDMVILGKALGGGVIPVSAVLA-DKEVMLCIQPG--EHGSTFG  229 (374)
Q Consensus       155 ~~l~~~~~i~li~Dea~~~~~~~g~~~~~~~~--~~~~d~~s~sK~~~~G~~~~G~~~~-~~~~~~~~~~~--~~~~~~~  229 (374)
                      .++|++||+++++|+++++....+........  ....+..+++|..+++. ..+.... ...........  ....+..
T Consensus       161 ~~~~~~~~~~~~~D~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~  239 (345)
T d1v72a1         161 GDVCKSSSLGLHMDGSRFANALVSLGCSPAEMTWKAGVDALSFGATKNGVL-AAEAIVLFNTSLATEMSYRRKRAGHLSS  239 (345)
T ss_dssp             HHHHHHTTCEEEEEETTHHHHHHHHTCCTTTTTGGGTCCEEEECCGGGTCS-SCEEEEESSGGGHHHHHHHHHHTTCCCS
T ss_pred             HHHHHhcCceeeecccccceeccccccCHHHhhccccccccccCccccccc-cccccccchhhhhhhccccccccccccc
Confidence            99999999999999999854333332222222  23345667776665443 3333332 22222221111  1112222


Q ss_pred             CCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHC
Q 017259          230 GNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKER  309 (374)
Q Consensus       230 ~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  309 (374)
                      ...   .++.++.....+. ..........++.+.+......+|++....+..++++++.++        .++++.|+++
T Consensus       240 ~~~---~aa~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~g~~~~~p~~~niv~~~~~--------~~~~~~L~~~  307 (345)
T d1v72a1         240 KMR---FLSAQIDAYLTDD-LWLRNARKANAAAQRLAQGLEGLGGVEVLGGTEANILFCRLD--------SAMIDALLKA  307 (345)
T ss_dssp             STH---HHHHHHHHHTSTT-HHHHHHHHHHHHHHHHHHHHTTCTTEEEESCCCSSEEEEEEC--------HHHHHHHHHT
T ss_pred             hhh---HHhhhhHHHHHHh-hhhhhccchhhHHHHHHHHHHhcCCcEeccCCCccEEEEEcC--------HHHHHHHHHc
Confidence            222   2222233333222 223333333344444444444444332222334566666553        3578899999


Q ss_pred             CeEeccC--CCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          310 GILAKPT--HDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       310 Gi~v~~~--~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      |+.+.+.  +.+.+||+++..+|+||+|+++++|+++
T Consensus       308 gi~v~~~~~~~~~lR~~~~~~~T~edid~~le~lr~a  344 (345)
T d1v72a1         308 GFGFYHDRWGPNVVRFVTSFATTAEDVDHLLNQVRLA  344 (345)
T ss_dssp             TCBCBCSSSSTTEEEEECCTTCCHHHHHHHHHHHHHT
T ss_pred             CCCccccCCCCCEEEEECCCCCCHHHHHHHHHHHHHh
Confidence            9887543  4689999999999999999999999864

>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tryptophan indol-lyase (tryptophanase)
species: Escherichia coli [TaxId: 562]

Probab=99.84  E-value=2.3e-20  Score=176.77  Aligned_cols=328  Identities=17%  Similarity=0.115  Sum_probs=197.2

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..++...+|++++++++|.+.+++++||++|++.|++++++++......  +....++....||+.+......++.....
T Consensus        71 ~~~~~~~~le~~~a~l~G~~~~~~~~sGt~A~~~a~~~~~~~g~~~~~~--~~~~~i~~~~~~~~~~~~~~~~~G~~~~~  148 (467)
T d2v1pa1          71 SGSRSYYALAESVKNIFGYQYTIPTHQGRGAEQIYIPVLIKKREQEKGL--DRSKMVAFSNYFFDTTQGHSQINGCTVRN  148 (467)
T ss_dssp             SSCHHHHHHHHHHHHHTCCSEEEEECSSTTTHHHHHHHHHHHHHHHHCC--CTTTCEEEESSCCHHHHHHHHHTTCEEEE
T ss_pred             cCCchHHHHHHHHHHHHCCCEEEECCCCHHHHHHHHHHHhhccceEecC--CCCcEEEEecccccccHHHHHHcCCeeee
Confidence            3467788999999999999999999999999999999997665211111  11334555666666655555555421111


Q ss_pred             c--cCC-CCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           98 R--GFG-PLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        98 ~--~~~-~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      .  ... ............|++++++.++.+. +.+++++++++++..|+.+++.+++++|.++|++||++||+|+++..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~i~~e~~~~~~gg~~~~~~~l~~i~~ia~~~g~~l~~D~a~~~  228 (467)
T d2v1pa1         149 VYIKEAFDTGVRYDFKGNFDLEGLERGIEEVGPNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFA  228 (467)
T ss_dssp             CBCTTTTCTTSCCTTTTCBCHHHHHHHHHHHCGGGCCCEEEESSBCGGGCBCCCHHHHHHHHHHHHHTTCCEEEECTTHH
T ss_pred             cccccccccccccccccCCCHHHHHHHHhhcCccccceeeecceeeccccccCCHHHHHHHHHHHHHcCCEEEEechhhh
Confidence            0  000 0001111122338999999998654 56889999999998888888999999999999999999999999861


Q ss_pred             ---CcccccCccccc---------CCCCCcEEEecccccCCccchhhheeCHHH-HhhcC-------CCCCCCCCCC-CH
Q 017259          174 ---LARSGRMLASDW---------EEVRPDMVILGKALGGGVIPVSAVLADKEV-MLCIQ-------PGEHGSTFGG-NP  232 (374)
Q Consensus       174 ---~~~~g~~~~~~~---------~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~-~~~~~-------~~~~~~~~~~-~~  232 (374)
                         +...+.......         .....|++|+|+..+++.-..|+++.+++. ....+       ......++.. ..
T Consensus       229 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~d~~s~s~~K~~~~~~gg~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  308 (467)
T d2v1pa1         229 ENAYFIKQREAEYKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGFPTYGGLEG  308 (467)
T ss_dssp             HHHHHHHHHCGGGTTSCHHHHHHHHGGGCSEEEEESSSTTCCSSCEEEEECSGGGHHHHHHHHHHHHHTTSSCCCCCCCH
T ss_pred             ccccccccccccccCCcccccchhhcccCCEEEecCCCCCCCCCceeEEecchhhhhHHHhhcccccccccCcchhhhHH
Confidence               101111111111         122467888875544322023445555432 22211       1122333333 33


Q ss_pred             HHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEe----ccCCC-chhHHH-HHHHH
Q 017259          233 LASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEF----DKTAL-PVSAYD-ICLKM  306 (374)
Q Consensus       233 ~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~----~~~~~-~~~~~~-~~~~l  306 (374)
                      ..+++....+.....+++.++..++.+++.++|++...    .+.  +..+....++.    +.... ...... ..+.+
T Consensus       309 ~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~L~~~~~----~v~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ll  382 (467)
T d2v1pa1         309 GAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGV----VCQ--QAGGHAAFVDAGKLLPHIPADQFPAQALACELY  382 (467)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTTC----CEE--EECSSCEEEEHHHHSTTSCGGGCHHHHHHHHHH
T ss_pred             HHHHHHHHHhHHhhhHHHHHHHHHHHHHHHHHHHhcCC----ccc--CCCccceeecchhhcCCcchhhhhhHHHHHHHH
Confidence            34444444455444457788888889999998877531    111  22222222221    11110 012233 44445


Q ss_pred             HHCCeEec-----------------cCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcCCC
Q 017259          307 KERGILAK-----------------PTHDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMRK  354 (374)
Q Consensus       307 ~~~Gi~v~-----------------~~~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~~~  354 (374)
                      .+.||...                 +.....+|++++ ...|++|+|+++++|+++++ ....++.
T Consensus       383 ~~~Gi~~~~~g~~~~~~~~~~~~~~~~~~~~vRlaip~~~~T~eeiD~vv~~l~~v~~-~~~~i~~  447 (467)
T d2v1pa1         383 KVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPRATYTQTHMDFIIEAFKHVKE-NAANIKG  447 (467)
T ss_dssp             HHHCEECEEESHHHHCBCTTTCSBCCCSCCEEEECCCTTTCCHHHHHHHHHHHHHHHH-TGGGCCC
T ss_pred             HHcCCeeecccccccccccccCCccCCCcceEEEecCCCCCCHHHHHHHHHHHHHHHH-HHHhccC
Confidence            67787542                 123578999865 56799999999999999998 6655543

>d2ay1a_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT {Paracoccus denitrificans [TaxId: 266]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Aromatic aminoacid aminotransferase, AroAT
species: Paracoccus denitrificans [TaxId: 266]

Probab=99.84  E-value=8.1e-21  Score=176.08  Aligned_cols=294  Identities=14%  Similarity=0.050  Sum_probs=172.7

Q ss_pred             CcHHHHHHHHhcccC---CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFG---YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~---~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ++++.+++.+....+   ....+.+.+|+.+..+++.++..   ..+|     |.|++++|+|..+.......+......
T Consensus        73 ~lr~aia~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~g-----d~V~~p~p~~~~y~~~~~~~g~~~v~~  144 (394)
T d2ay1a_          73 EFQKAMGELILGDGLKSETTATLATVGGTGALRQALELARM---ANPD-----LRVFVSDPTWPNHVSIMNFMGLPVQTY  144 (394)
T ss_dssp             HHHHHHHHHHHGGGCCGGGEEEEEEEHHHHHHHHHHHHHHH---HCTT-----CCEEEEESCCHHHHHHHHHHTCCEEEE
T ss_pred             HHHHHHHHHHhccccccccccceeccCchHHHHHHHHHhhh---cCCc-----eEEEEecccccchHHHHHHcCCEEEEe
Confidence            334444444444332   23456667776666555544322   4566     999999999976666555554322211


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      .....  ...    ..+.+++++.+....++++++++.+++||||... +++.+++|+++|++|+++||+||+|.++.+.
T Consensus       145 ~~~~~--~~~----~~~~~~~~~~~~~~~~~~~i~~~~~p~NPTG~~~-s~e~~~~l~~la~~~~~~ii~De~Y~~l~~~  217 (394)
T d2ay1a_         145 RYFDA--ETR----GVDFEGMKADLAAAKKGDMVLLHGCCHNPTGANL-TLDQWAEIASILEKTGALPLIDLAYQGFGDG  217 (394)
T ss_dssp             ECEET--TTT----EECHHHHHHHHHTCCTTCEEEEESSSCTTTCCCC-CHHHHHHHHHHHHHHTCEEEEEECCTTSSSC
T ss_pred             cccch--hcc----cccchhHHHHHhhcccCcEEEEeCCCCCCCCCCC-CHHHHHHHHHHhhcceEEEEEeccchhhccc
Confidence            10000  000    0146667766666656788888888999999877 9999999999999999999999999988655


Q ss_pred             ccCccc--c--c-CCC-CCcEEEeccccc-CCccchhhheeCHHHHhhcCCC-------CCCCCCCCCHHHHHHHHHHHH
Q 017259          178 GRMLAS--D--W-EEV-RPDMVILGKALG-GGVIPVSAVLADKEVMLCIQPG-------EHGSTFGGNPLASAVAIASLD  243 (374)
Q Consensus       178 g~~~~~--~--~-~~~-~~d~~s~sK~~~-~G~~~~G~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~aa~~al~  243 (374)
                      +.....  .  . ... ...+.++||.++ .|+ |+||+.+.....+.....       ........+.+.++.+...+.
T Consensus       218 ~~~~~~~~~~~~~~~~~~~~~~s~sk~~~~~G~-R~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  296 (394)
T d2ay1a_         218 LEEDAAGTRLIASRIPEVLIAASCSKNFGIYRE-RTGCLLALCADAATRELAQGAMAFLNRQTYSFPPFHGAKIVSTVLT  296 (394)
T ss_dssp             HHHHHHHHHHHHHHCSSEEEEEECTTTTTCGGG-CEEEEEEECSSHHHHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHH
T ss_pred             ccccchhhhhhhhhcccccccccccccccCCcc-cccchhhchhHHHHHHHhhhhhHhhhcccccchhHHHHHHHHHhcC
Confidence            432111  0  0 111 112348889888 599 999988765443332210       112222334444443333222


Q ss_pred             H------Hhh--hcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH-HCCeEec
Q 017259          244 V------IRD--EKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK-ERGILAK  314 (374)
Q Consensus       244 ~------~~~--~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~-~~Gi~v~  314 (374)
                      .      +.+  +.+.++++++++.+.+.|++.+... ......+..|.|.|+.+        ..+++++|+ ++||++.
T Consensus       297 ~~~l~~~~~~~~~~~~~~~~~~r~~l~~~L~~~~~~~-~~~~~~~~~G~F~~~~l--------s~~~~~~L~~~~~V~~~  367 (394)
T d2ay1a_         297 TPELRADWMAELEAVRSGMLRLREQLAGELRDLSGSD-RFGFVAEHRGMFSRLGA--------TPEQVKRIKEEFGIYMV  367 (394)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSS-TTTHHHHCCSSEEECCC--------CHHHHHHHHHHHCEECC
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC-ceeeECCCceeEEecCc--------CHHHHHHHHHhCCEEec
Confidence            1      001  1345556666666666666654221 01111223455666432        235677776 5699999


Q ss_pred             cCCCCEEEEecCCCCCHHHHHHHHHHHHHH
Q 017259          315 PTHDTIVRLTPPLSISSNELQEGSKALHDV  344 (374)
Q Consensus       315 ~~~~~~lRi~~~~~~~~e~i~~~~~~l~~~  344 (374)
                      ++.    ||+++ ..++++++.+.++|.++
T Consensus       368 ~g~----Ri~~a-~l~~~~i~~l~~ai~~v  392 (394)
T d2ay1a_         368 GDS----RINIA-GLNDNTIPILARAIIEV  392 (394)
T ss_dssp             TTC----EEEGG-GCCTTTHHHHHHHHHHH
T ss_pred             CCC----EEEec-CCCHHHHHHHHHHHHHh
Confidence            874    99854 35778899888888764

>d1o69a_ c.67.1.4 (A:) Aminotransferase homolog WlaK (PglE, Cj1121c) {Campylobacter jejuni [TaxId: 197]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Aminotransferase homolog WlaK (PglE, Cj1121c)
species: Campylobacter jejuni [TaxId: 197]

Probab=99.84  E-value=7.4e-20  Score=168.30  Aligned_cols=308  Identities=13%  Similarity=0.176  Sum_probs=197.0

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++.++.+..   .+..++||+.+++++|.+.+++++|||+|+.+|++++.    .++|     |+|+++..+|.
T Consensus         5 ~~~~~~l~~~~~~~~---G~~~~~fE~~~~~~~~~~~~~~~~SgT~Al~lal~~l~----~~~g-----deVi~p~~t~~   72 (374)
T d1o69a_           5 KYIEEVFKSNYIAPL---GEFVNRFEQSVKDYSKSENALALNSATAALHLALRVAG----VKQD-----DIVLASSFTFI   72 (374)
T ss_dssp             HHHHHHHHHTTTSCT---THHHHHHHHHHHHHHCCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCG
T ss_pred             HHHHHHHhcCCcCCC---CHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC----CCCc-----CEEEeCCcchH
Confidence            678888888765432   56788999999999999999999999999999999874    6778     99999998875


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      ........++..+.        +.++...........++......++++++++.+..   |...+    +++|.++|+++
T Consensus        73 a~~~~~~~~g~~pv--------~~Di~~~~~~~~~~~~~~~~~~~~~~~aii~~~~~---G~~~d----~~~i~~~~~~~  137 (374)
T d1o69a_          73 ASVAPICYLKAKPV--------FIDCDETYNIDVDLLKLAIKECEKKPKALILTHLY---GNAAK----MDEIVEICKEN  137 (374)
T ss_dssp             GGTHHHHHTTCEEE--------EECBCTTSSBCHHHHHHHHHHCSSCCCEEEEECGG---GCCCC----HHHHHHHHHHT
T ss_pred             hhHHHHhhccceeE--------ecccccccccccccccccchhcccccccccccccc---cchhh----hHHHHHHhhcc
Confidence            55444444443322        23333211122333333334444678888887766   44444    99999999999


Q ss_pred             CCEEEEecccc-CCcccccCcccccCCCCCcEEEec----ccccCCccchhhhee-CHHHHhhcCCC-------------
Q 017259          162 NILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLA-DKEVMLCIQPG-------------  222 (374)
Q Consensus       162 ~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~-~~~~~~~~~~~-------------  222 (374)
                      |++||+|.+|+ |..+.|.     ..|-..|+.+||    |.++.|-  .|.++. ++++++.++..             
T Consensus       138 ~i~vIED~a~a~g~~~~~~-----~~G~~gd~~~fSf~~~K~l~tge--GG~i~tnn~~~~~~~~~~~~~g~~~~~~~~~  210 (374)
T d1o69a_         138 DIVLIEDAAEALGSFYKNK-----ALGTFGEFGVYSYNGNKIITTSG--GGMLIGKNKEKIEKARFYSTQARENCLHYEH  210 (374)
T ss_dssp             TCEEEEECTTCTTCEETTE-----ETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTCCCSSSSCCC
T ss_pred             CcchhhhhhhhhcceECCe-----ecCCCCceEEEeccCcccccccc--ceeehhhhHHHHHhhcccccccccccccccc
Confidence            99999999998 2211222     123334665544    8887543  244444 56666655311             


Q ss_pred             -CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC-------
Q 017259          223 -EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA-------  294 (374)
Q Consensus       223 -~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~-------  294 (374)
                       ..+..+.++.+.++.+...++.+.  ++.++.++..+.+.+.|.......+ ..........+..+.+....       
T Consensus       211 ~~~G~N~rm~ei~Aaig~~qL~~l~--~~i~~r~~i~~~y~~~L~~~~~~~~-~~~~~~s~~~~~~~~~~~~~~~~~~~~  287 (374)
T d1o69a_         211 LDYGYNYRLSNVLGAIGVAQMEVLE--QRVLKKREIYEWYKEFLGEYFSFLD-ELENSRSNRWLSTALINFDKNELNACQ  287 (374)
T ss_dssp             SSCCCBCBCCHHHHHHHHHHHTTHH--HHHHHHHHHHHHHHHHHTTTEECCC-CCTTEECCCSSEEEEESCCGGGSCCCC
T ss_pred             ccCCccccccchhhhhhHHHHhhhh--hhcchhHHHHHHHHhhccccccccc-cccCCCCChhheeeeeccccccccccc
Confidence             134556778888888888777553  4566666666777666655422211 11222222222222221110       


Q ss_pred             -----------CchhHHHHHHHHHHCCeEeccCC------------------------CCEEEEecCCCCCHHHHHHHHH
Q 017259          295 -----------LPVSAYDICLKMKERGILAKPTH------------------------DTIVRLTPPLSISSNELQEGSK  339 (374)
Q Consensus       295 -----------~~~~~~~~~~~l~~~Gi~v~~~~------------------------~~~lRi~~~~~~~~e~i~~~~~  339 (374)
                                 .....+++.++|.++||.+++..                        ...+.+-++..+|++|++++++
T Consensus       288 ~~~~~~~~~~~~~~~r~~l~~~L~~~gI~~r~~y~pl~~~~~~~~~~~~~~pna~~~~~~~i~LP~~~~lt~~di~~I~~  367 (374)
T d1o69a_         288 KDINISQKNITLHPKISKLIEDLKNKQIETRPLWKAMHTQEVFKGAKAYLNGNSELFFQKGICLPSGTAMSKDDVYEISK  367 (374)
T ss_dssp             EEEECCCCCCCCCHHHHHHHHHHHHTTCCCBCCCCCGGGCGGGTTCEEEECSHHHHHHHHEEEECCCTTCCHHHHHHHHH
T ss_pred             cccccchhhccchhhHHHHHHHHHHCCCCEEEeCcchhhChhhhcCCCCCCHHHHHHHhCEEECcCCCCCCHHHHHHHHH
Confidence                       01257789999999999886531                        2446665566789999999999


Q ss_pred             HHHHHHh
Q 017259          340 ALHDVLE  346 (374)
Q Consensus       340 ~l~~~~~  346 (374)
                      .|.++++
T Consensus       368 ~I~~~lk  374 (374)
T d1o69a_         368 LILKSIK  374 (374)
T ss_dssp             HHHHHHC
T ss_pred             HHHHHHC
Confidence            9998874

>d1b9ha_ c.67.1.4 (A:) 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase) {Amycolatopsis mediterranei [TaxId: 33910]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: 3-amino-5-hydroxybenzoic acid synthase (AHBA synthase)
species: Amycolatopsis mediterranei [TaxId: 33910]

Probab=99.83  E-value=6.4e-20  Score=169.06  Aligned_cols=308  Identities=15%  Similarity=0.145  Sum_probs=196.2

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++.+....  ...+...++|+++++++|.++++.++|||+|+.+|++.+.    .++|     |+|+++..+|.
T Consensus        17 ~~~~~~l~~g~~~~--~~g~~v~~fE~~~a~~~g~~~~v~~~SGt~Al~lal~~l~----~~~g-----deVi~p~~t~~   85 (384)
T d1b9ha_          17 NGLVRALEQGQWWR--MGGDEVNSFEREFAAHHGAAHALAVTNGTHALELALQVMG----VGPG-----TEVIVPAFTFI   85 (384)
T ss_dssp             HHHHHHHHTSCCBT--TTCSHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHHHHTT----CCTT-----CEEEEESSSCT
T ss_pred             HHHHHHHHcCCeee--cCCHHHHHHHHHHHHHHCcCeEEEeCCHHHHHHHHHHHcC----CCCC-----CEEEEeccccc
Confidence            45666666653211  2367899999999999999999999999999999998874    6778     99999999986


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCC-CHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFG-DITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK  160 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~  160 (374)
                      .........+..+.+        .++....+. |++.+++.+.   ++++++++.+..+   ...+    +++|.++|++
T Consensus        86 a~~~ai~~~g~~p~~--------~d~~~~~~~~d~~~~~~~i~---~~tk~i~~~~~~g---~~~d----~~~i~~~~~~  147 (384)
T d1b9ha_          86 SSSQAAQRLGAVTVP--------VDVDAATYNLDPEAVAAAVT---PRTKVIMPVHMAG---LMAD----MDALAKISAD  147 (384)
T ss_dssp             HHHHHHHHTTCEEEE--------ECBCTTTCCBCHHHHHHHCC---TTEEEECCBCGGG---CCCC----HHHHHHHHHH
T ss_pred             ccccccccccccccc--------ccccccccccchhhhccccc---ccccccccccccc---cccc----cccchhhhhh
Confidence            555554444443332        222222222 7888888776   6899998877664   4455    9999999999


Q ss_pred             cCCEEEEecccc-CCcccccCcccccCCCCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCC--------------
Q 017259          161 YNILMIADEIQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPG--------------  222 (374)
Q Consensus       161 ~~i~li~Dea~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~--------------  222 (374)
                      ++++||.|.+|+ |-...|...  ..++ +..+.||+  |.++.|-  .|.++. ++++.+.++..              
T Consensus       148 ~~i~lieD~a~a~ga~~~g~~~--g~~g-~~~~~Sf~~~K~i~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~  222 (384)
T d1b9ha_         148 TGVPLLQDAAHAHGARWQGKRV--GELD-SIATFSFQNGKLMTAGE--GGAVVFPDGETEKYETAFLRHSCGRPRDDRRY  222 (384)
T ss_dssp             HTCCBCEECTTCTTCEETTEEG--GGSS-SCEEEECCTTSSSCSSS--CEEEEECTTCHHHHHHHHHHTBTTCCTTCSSC
T ss_pred             hhhhhhhhhceecccccCCEec--Cccc-ccceecccccccccccc--cchhhhhhHHHHHHHHHHHhcCCCCccccccc
Confidence            999999999998 221122211  1111 12344553  8877554  444555 44554443211              


Q ss_pred             ---CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCc-eeeE-EEEeeeEEEEeccCCCch
Q 017259          223 ---EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNY-VKEV-RGRGLFNAVEFDKTALPV  297 (374)
Q Consensus       223 ---~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~~~-~~~g~~~~~~~~~~~~~~  297 (374)
                         ..+..+-++.+.++.++..|+.+  +++.++.+++.+++.+.|+.+....+.. .... .....++.+.++... ..
T Consensus       223 ~~~~~G~n~rms~l~Aaig~~qL~~l--d~~~~~R~~~~~~y~~~L~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~-~~  299 (384)
T d1b9ha_         223 FHKIAGSNMRLNEFSASVLRAQLARL--DEQIAVRDERWTLLSRLLGAIDGVVPQGGDVRADRNSHYMAMFRIPGLT-EE  299 (384)
T ss_dssp             CCCSCCCBCBCBHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHHTSTTCEECCCCTTCCBCCCSEEEEECTTCC-HH
T ss_pred             cccccccccccccchhhhhhhhhhhc--ccchhhhhhhhhhhhhhhhcccccccccccccccccccccccceecccc-cc
Confidence               12345566888777777777654  3456666677777777666542211000 0011 111223334343221 22


Q ss_pred             hHHHHHHHHHHCCeEeccCC---------------------------------CCEEEEecCCCCC-HHHHHHHHHHHHH
Q 017259          298 SAYDICLKMKERGILAKPTH---------------------------------DTIVRLTPPLSIS-SNELQEGSKALHD  343 (374)
Q Consensus       298 ~~~~~~~~l~~~Gi~v~~~~---------------------------------~~~lRi~~~~~~~-~e~i~~~~~~l~~  343 (374)
                      ..+++.++|.++||.++...                                 ...+.+-.+..+| ++|++++++.|++
T Consensus       300 ~Rd~l~~~L~~~GI~~~~~y~plh~~~~~~~~~~~~~~~~~~~~~~Pna~~l~~~~l~LP~~~~Lt~e~ei~~I~~~i~~  379 (384)
T d1b9ha_         300 RRNALVDRLVEAGLPAFAAFRAIYRTDAFWELGAPDESVDAIARRCPNTDAISSDCVWLHHRVLLAGEPELHATAEIIAD  379 (384)
T ss_dssp             HHHHHHHHHHHTTCCEEECCCCGGGSHHHHHSSCCSSCHHHHHHTCHHHHHHHHHEEEEEGGGGGSCHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHCCCCeeeeCcchhcCHHHHhcCCCcccccccccCCHHHHHHHhCEEEccCCCCCCCHHHHHHHHHHHHH
Confidence            46789999999999875321                                 2457776666777 5799999999999


Q ss_pred             HHh
Q 017259          344 VLE  346 (374)
Q Consensus       344 ~~~  346 (374)
                      ++.
T Consensus       380 ~l~  382 (384)
T d1b9ha_         380 AVA  382 (384)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            886

>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola [TaxId: 549]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Beta-eliminating lyases
domain: Tyrosine phenol-lyase
species: Erwinia herbicola [TaxId: 549]

Probab=99.82  E-value=3.7e-19  Score=166.93  Aligned_cols=316  Identities=14%  Similarity=0.117  Sum_probs=187.4

Q ss_pred             CCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc-
Q 017259           18 FYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA-   96 (374)
Q Consensus        18 ~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~-   96 (374)
                      ..++-..+|++++++++|.+.+++++||++|+.++++++     .++|     |+|+... .|+.........++.+.. 
T Consensus        72 ~~dpt~~~lE~~~a~l~G~e~al~~~SGt~An~~a~~~l-----~~~G-----d~Vi~~~-~f~~~~~~i~~~g~~~~~~  140 (456)
T d1c7ga_          72 AGSENFYHLEKTVKELFGFKHIVPTHQGRGAENLLSQLA-----IKPG-----QYVAGNM-YFTTTRFHQEKNGATFVDI  140 (456)
T ss_dssp             SSCHHHHHHHHHHHHHHCCSEEEEESSHHHHHHHHHHHH-----CCTT-----EEEEESS-CCHHHHHHHHHTTEEEEEC
T ss_pred             cCCchHHHHHHHHHHHhCCCeEEECCCHHHHHHHHHHHh-----cCCC-----CeEecCc-chHHHHHHHHHcCceeeec
Confidence            447778899999999999999999999999999999988     6777     8877543 222211111111111100 


Q ss_pred             --cccCCCCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           97 --IRGFGPLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        97 --~~~~~~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                        .....+... ....-..|+++|++.|+.+. .+++.++++.++|..|+.+.+.+.+++|.++|++||++++.|+++..
T Consensus       141 ~~~~~~~~~~~-~~~~~~~d~~~le~~I~~~~~~~~~~i~~e~~~n~~gG~~~~~~~l~~i~~~a~~~~~~~~~D~a~~~  219 (456)
T d1c7ga_         141 VRDEAHDASLN-LPFKGDIDLNKLATLIKEKGAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCV  219 (456)
T ss_dssp             BCGGGGCTTCC-CSCTTCBCHHHHHHHHHHHCGGGEEEEEEESSBTTTTSBCCCHHHHHHHHHHHHHHTCCEEEECTTHH
T ss_pred             ccccccccccc-CCccccCCHHHHHHHhhhcCCccceeEEeeecccccccceecHHHHHHHHHHHHHcCCEEEEEcchhh
Confidence              001111100 00111128999999999754 56788999988888888888999999999999999999999999751


Q ss_pred             ----C------cccccCcc-c-ccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCC----CCCCCC-CCCHH
Q 017259          174 ----L------ARSGRMLA-S-DWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPG----EHGSTF-GGNPL  233 (374)
Q Consensus       174 ----~------~~~g~~~~-~-~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~----~~~~~~-~~~~~  233 (374)
                          +      ++.+.... . ....-..|++++|  |.++++.  +|+++.+ +.+.+.++..    ....++ ..+..
T Consensus       220 ~~a~~~~~~~~~~~~~~i~~i~~~~~~~ad~~s~s~~K~~~~~~--GG~i~~~~~~l~~~~r~~~~~~~g~~~~g~~~~~  297 (456)
T d1c7ga_         220 ENAYFIKEQEAGYENVSIKDIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDEEMFSAAKELVVVYEGMPSYGGLAGR  297 (456)
T ss_dssp             HHHHHHHHHSTTCTTSCHHHHHHHHHTTCSEEEEETTTTTCCSS--CEEEEESCHHHHHHHHHHHHHHTCCTTTTTCCHH
T ss_pred             cchhhhcccccccCCCChhhhccccccccccEEEeccccccccc--eeEEEcCCHHHHHHHHHhccccCCCcccchhhHH
Confidence                0      00000000 0 0001235777665  6665332  3445554 4566555421    122222 23334


Q ss_pred             HHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEec----cCCC-chhHHHHHHHH-H
Q 017259          234 ASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFD----KTAL-PVSAYDICLKM-K  307 (374)
Q Consensus       234 ~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~----~~~~-~~~~~~~~~~l-~  307 (374)
                      .+.++...+.....+++.++..++.+++.++|++.+..   ++.  +..++.+.++..    .... .....++...+ .
T Consensus       298 ~~~a~a~~l~e~~~~~~l~~r~~~~~~L~e~L~~~g~~---vv~--p~g~~~v~vda~~~~~~i~~~~~~~~~~~~~l~~  372 (456)
T d1c7ga_         298 DMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLREAGVP---IVE--PTGGHAVFLDARRFCPHLTQDQFPAQSLAASIYM  372 (456)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTTCC---BCS--SCCSSEEEEEHHHHCTTSCGGGCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHhccCC---ccc--CCCCcceeEechhhccCCCcccccHHHHHHHHHH
Confidence            44444444444444566666677778888888776321   222  223343443321    1110 11344444444 5


Q ss_pred             HCCeEeccC-----------------CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccCCcCC
Q 017259          308 ERGILAKPT-----------------HDTIVRLTPP-LSISSNELQEGSKALHDVLELDLPKMR  353 (374)
Q Consensus       308 ~~Gi~v~~~-----------------~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~~~~~  353 (374)
                      +.||...+.                 ....+|++++ ...|++++|.++++|+++.+ ....++
T Consensus       373 ~~GIr~~~~g~~~~~~~~~~g~~~~~~~e~vRLaip~~~~T~e~iD~Vae~i~~v~~-~~~~i~  435 (456)
T d1c7ga_         373 ETGVRSMERGIVSAGRSKETGENHRPKLETVRLTIPRRVYTYAHMDVVADGIIKLYQ-HKEDIR  435 (456)
T ss_dssp             HHSEECEEESHHHHCBCSSSCCBCCCSCCEEEEECCTTSCCHHHHHHHHHHHHHHHT-TGGGCC
T ss_pred             HhCeeecccCccccccCCcccCccCCccceEEEecCcccCCHHHHHHHHHHHHHHHh-hhhhcC
Confidence            668865321                 1346999977 45699999999999999997 554443

>d1vjoa_ c.67.1.3 (A:) Alanine-glyoxylate aminotransferase {Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Cyanobacteria (Nostoc sp. pcc 7120) [TaxId: 103690]

Probab=99.81  E-value=1e-18  Score=160.57  Aligned_cols=291  Identities=14%  Similarity=0.152  Sum_probs=186.4

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEA   96 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~   96 (374)
                      .+.+++..+.|+++++.+   .++|+.|||++++.++..+     ..+|     +++++....+++..............
T Consensus        50 ~~i~~~~r~~l~~ll~~~~~~~i~~~g~gT~~~~~~~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~  119 (377)
T d1vjoa_          50 LALMDEIQSLLRYVWQTENPLTIAVSGTGTAAMEATIANA-----VEPG-----DVVLIGVAGYFGNRLVDMAGRYGADV  119 (377)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHhc-----cccc-----cccceeeechhhhhhhhhhhhhcccc
Confidence            566888888998887543   6888899999999999888     5556     88888777755433222222111111


Q ss_pred             cccCCCCCCCceeccC---CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccC
Q 017259           97 IRGFGPLLPGHLKVDF---GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSG  173 (374)
Q Consensus        97 ~~~~~~~~~~~~~~~~---~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~  173 (374)
                      .         ....+.   .+.+..+.....  ++++.+.+....+.+|.+.+    +++|.++|+++|.++++|.+++ 
T Consensus       120 ~---------~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~----i~~i~~~~~~~g~~~~vDa~~~-  183 (377)
T d1vjoa_         120 R---------TISKPWGEVFSLEELRTALET--HRPAILALVHAETSTGARQP----LEGVGELCREFGTLLLVDTVTS-  183 (377)
T ss_dssp             E---------EEECCTTCCCCHHHHHHHHHH--HCCSEEEEESEETTTTEECC----CTTHHHHHHHHTCEEEEECTTT-
T ss_pred             c---------ccccCCCCcccchhhhhhhhc--Ccceeeeeeeeeccceeeec----hhhhhhhhhhccceEEEecchh-
Confidence            1         111111   134444444443  36777888888888999999    9999999999999999999997 


Q ss_pred             CcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCC--------------------CCCCCCCC
Q 017259          174 LARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGE--------------------HGSTFGGN  231 (374)
Q Consensus       174 ~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~--------------------~~~~~~~~  231 (374)
                      ++.    ...+...+..|++++|  |+++|+- .+|++..++...+......                    .......+
T Consensus       184 ~g~----~~~~~~~~~~d~~~~s~~K~~~gp~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (377)
T d1vjoa_         184 LGG----VPIFLDAWGVDLAYSCSQKGLGCSP-GASPFTMSSRAIEKLQRRRTKVANWYLDMNLLGKYWGSERVYHHTAP  258 (377)
T ss_dssp             TTT----SCCCTTTTTCSEEECCSSSTTCSCS-SCEEEEECHHHHHHHHTCSSCCSCSTTCHHHHHHHHSTTCCCCSCCC
T ss_pred             hhh----hhhcccccccceeeecccccccCCC-EEEEecchhhHHhhhhccCCCCcceeeccchhhhccCcccccccccc
Confidence            211    1223334566777665  7777665 6677778877666543321                    11122334


Q ss_pred             HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          232 PLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      .....+..++...+...   ....+.++..+++.+.+.......  ...........+.|.+++..   +..++++.|.+
T Consensus       259 ~~~~~~l~~~~~~~~~~g~~~~~~~~~~~~~~l~~~l~~~~~~~--~~~~~~rs~~v~~~~~p~~~---~~~~l~~~L~~  333 (377)
T d1vjoa_         259 INLYYALREALRLIAQEGLANCWQRHQKNVEYLWERLEDIGLSL--HVEKEYRLPTLTTVCIPDGV---DGKAVARRLLN  333 (377)
T ss_dssp             HHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHTTCCB--SSCGGGBCSSEEEEECCTTC---CHHHHHHHHHH
T ss_pred             eechhhhHHHHhhhhhcCchHHHHHHHHHhhhhhhhhhccCcee--ecChHhcCCeEEEEECCCCC---CHHHHHHHHHh
Confidence            44444555555544433   445556666666666666543221  11112223445566676554   78899999865


Q ss_pred             C-CeEeccC----CCCEEEEe-cCCCCCHHHHHHHHHHHHHHHh
Q 017259          309 R-GILAKPT----HDTIVRLT-PPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       309 ~-Gi~v~~~----~~~~lRi~-~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      + ||.+..+    .++.+||+ +++..+.||+++++++|+++++
T Consensus       334 ~~gI~v~~G~~~~~~~~~Ris~~g~~~t~edi~~lv~al~~~l~  377 (377)
T d1vjoa_         334 EHNIEVGGGLGELAGKVWRVGLMGFNSRKESVDQLIPALEQVLR  377 (377)
T ss_dssp             HHCEECEECCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHC
T ss_pred             cCCEEEecCcccccCCEEEEecCcCCCCHHHHHHHHHHHHHHhC
Confidence            5 9998764    35789998 4777899999999999999874

>d1eg5a_ c.67.1.3 (A:) NifS-like protein/selenocysteine lyase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: NifS-like protein/selenocysteine lyase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.80  E-value=2.4e-18  Score=158.19  Aligned_cols=291  Identities=16%  Similarity=0.158  Sum_probs=175.1

Q ss_pred             HHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           23 FPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      .++.++++++++|.+  ++++++|+|+++..++..+.... ..+|     +++++....++........+... +.....
T Consensus        46 ~~~aR~~ia~l~~~~~~~i~~~~~~T~~l~~~~~~~~~~~-~~~g-----~~v~~~~~~~~~~~~~~~~~~~~-g~~v~~  118 (376)
T d1eg5a_          46 MEKAREKVAKVLGVSPSEIFFTSCATESINWILKTVAETF-EKRK-----RTIITTPIEHKAVLETMKYLSMK-GFKVKY  118 (376)
T ss_dssp             HHHHHHHHHHHHTSCGGGEEEESCHHHHHHHHHHHHHHHT-TTTC-----CEEEECTTSCHHHHHHHHHHHHT-TCEEEE
T ss_pred             HHHHHHHHHHHcCCCCCcEEEECCHHHHHHhhhhcccccc-cccC-----cccccccccchhhHHHHHHHHhc-CCEEEE
Confidence            445577888888654  89999999999999887664322 3445     67776666654433333222211 111111


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEeccccCCcccc
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEIQSGLARSG  178 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea~~~~~~~g  178 (374)
                      .|...+..    -|+++++++++   ++|++++++.+++++|.+.+    ++++.++++.+  ++++++|.+|+ ++   
T Consensus       119 vp~~~~~~----id~~~l~~~i~---~~t~lv~is~v~~~tG~~~~----~~~i~~~~~~~~~~~~~~vD~~q~-~g---  183 (376)
T d1eg5a_         119 VPVDSRGV----VKLEELEKLVD---EDTFLVSIMAANNEVGTIQP----VEDVTRIVKKKNKETLVHVDAVQT-IG---  183 (376)
T ss_dssp             CCBCTTSC----BCHHHHHHHCC---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHCTTCEEEEECTTT-TT---
T ss_pred             EcCCCCCe----ECHHHHHHhcC---CCceEEEEECCccccceeee----ehhhhhhhhhcccCceeEEEeeec-cc---
Confidence            11111111    17889998887   68999999999999999998    99999998555  99999999997 21   


Q ss_pred             cCcccccCCCCCcEE--EecccccCCccchhhheeCHHHHhhcCCCCCC-------CCCCCCHHHHHHHHHHHHHHhhh-
Q 017259          179 RMLASDWEEVRPDMV--ILGKALGGGVIPVSAVLADKEVMLCIQPGEHG-------STFGGNPLASAVAIASLDVIRDE-  248 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~--s~sK~~~~G~~~~G~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~aa~~al~~~~~~-  248 (374)
                      . ...+.....+|+.  +..|+++ +. +.|++..+++.  .+++...+       .....+......+.++....... 
T Consensus       184 ~-~~~d~~~~~~D~~~~s~~K~~g-p~-G~~~l~~~~~~--~~~p~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  258 (376)
T d1eg5a_         184 K-IPFSLEKLEVDYASFSAHKFHG-PK-GVGITYIRKGV--PIRPLIHGGGQERGLRSGTQNVPGIVGAARAMEIAVEEL  258 (376)
T ss_dssp             T-SCCCCTTTCCSEEEEEGGGGTS-CT-TCEEEEECTTS--CCCCSBCSSCTTTTTBCSCCCHHHHHHHHHHHHHHHHTH
T ss_pred             c-ccccccccCccceecccceeec-CC-CceeEEeccCc--ccCCcccCCCCcccccCCcccchhhhhHHHHhhccccch
Confidence            1 1223334456766  4559865 33 44555555442  23332111       11223445544444444433221 


Q ss_pred             -cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC----------
Q 017259          249 -KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH----------  317 (374)
Q Consensus       249 -~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~----------  317 (374)
                       ..........+++.+.|+......  .............+.++..    .+..+...|.++||.++.+.          
T Consensus       259 ~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~~~gI~vr~G~~c~~~~~~~~  332 (376)
T d1eg5a_         259 SEAAKHMEKLRSKLVSGLMNLGAHI--ITPLEISLPNTLSVSFPNI----RGSTLQNLLSGYGIYVSTSSACTSKDERLR  332 (376)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTTCEE--CSCTTSBCTTEEEEECTTC----CHHHHHHHHHHTTEECBC------------
T ss_pred             hhhhhhhhhhhhhhccccccccccc--cccccccccceeeeccCCC----CHHHHHHHHhhCCeEEeCcchhcCCccchh
Confidence             233344444444544443332110  0001112223344445544    67889999999999887531          


Q ss_pred             -------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          318 -------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       318 -------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                   ++.+|++++..+|++|+|+++++|+++++
T Consensus       333 ~~l~~~gi~~~~~~~~iRiS~~~ynt~edid~l~~~L~~iv~  374 (376)
T d1eg5a_         333 HVLDAMGVDRRIAQGAIRISLCKYNTEEEVDYFLKKIEEILS  374 (376)
T ss_dssp             CHHHHTTCCHHHHHHEEEEECCTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCCcccCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Confidence                         24699999999999999999999999987

>d2fnua1 c.67.1.4 (A:2-372) Spore coat polysaccharide biosynthesis protein C {Helicobacter pylori [TaxId: 210]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Spore coat polysaccharide biosynthesis protein C
species: Helicobacter pylori [TaxId: 210]

Probab=99.80  E-value=2.9e-19  Score=164.10  Aligned_cols=303  Identities=16%  Similarity=0.165  Sum_probs=193.3

Q ss_pred             hHHHHHHHhccccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCC
Q 017259            2 KALQEQAEKLTLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFH   81 (374)
Q Consensus         2 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yh   81 (374)
                      +++.+.++.+..+    ..+..+++|++|++++|.+.+++++|||+|+.++++++.    .+.|   ++++|+++.-+|.
T Consensus        16 ~~v~~~l~~~~~~----~G~~v~~fE~~~~~~~g~k~ai~~~Sgt~Al~~al~al~----~~~~---~~~eVi~p~~t~~   84 (371)
T d2fnua1          16 KAVLEVLNSKQLT----QGKRSLLFEEALCEFLGVKHALVFNSATSALLTLYRNFS----EFSA---DRNEIITTPISFV   84 (371)
T ss_dssp             HHHHHHHTSSCCS----SSHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHSS----CCCT---TSCEEEECSSSCT
T ss_pred             HHHHHHHcCCCcc----CCHHHHHHHHHHHHHHCcCeEEEEecHHHHHHHHHHHhc----ccCC---CCCeeeccccccc
Confidence            4556666554443    256788899999999999999999999999999999874    3333   2268999887775


Q ss_pred             CcccccccccCCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc
Q 017259           82 GRTLAAISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY  161 (374)
Q Consensus        82 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~  161 (374)
                      .........+..+        .+.++....+.+.+++++++.   ++++++++.+..   |...+    +++|.++|+++
T Consensus        85 a~~~ai~~~G~~p--------v~vDi~~~~~~~~~~~~~~~~---~~t~avi~vh~~---G~~~~----~~~i~~~~~~~  146 (371)
T d2fnua1          85 ATANMLLESGYTP--------VFAGIKNDGNIDELALEKLIN---ERTKAIVSVDYA---GKSVE----VESVQKLCKKH  146 (371)
T ss_dssp             HHHHHHHHTTCEE--------EECCBCTTSSBCGGGSGGGCC---TTEEEEEEECGG---GCCCC----HHHHHHHHHHH
T ss_pred             ccceeeeccCccc--------ccccccccccccchhhhhhcc---chhhcccccccc---ccccc----ccccccccccc
Confidence            5444444433333        333333333334555555554   689999988766   55555    99999999999


Q ss_pred             CCEEEEeccccCCcccccCcccccCCCCCcEEEec----ccccCCccchhhhee-CHHHHhhcCCC--------------
Q 017259          162 NILMIADEIQSGLARSGRMLASDWEEVRPDMVILG----KALGGGVIPVSAVLA-DKEVMLCIQPG--------------  222 (374)
Q Consensus       162 ~i~li~Dea~~~~~~~g~~~~~~~~~~~~d~~s~s----K~~~~G~~~~G~~~~-~~~~~~~~~~~--------------  222 (374)
                      |++||+|.+|+-...    +.-...+...|+.++|    |.++.|-  .|.++. ++++.+.++..              
T Consensus       147 ~i~lIEDaaqa~Ga~----~~~~~~G~~g~~~~~Sf~~~K~l~~g~--GG~i~t~~~~~~~~~~~~~~~g~~~~~~~~~~  220 (371)
T d2fnua1         147 SLSFLSDSSHALGSE----YQNKKVGGFALASVFSFHAIKPITTAE--GGAVVTNDSELHEKMKLFRSHGMLKKDFFEGE  220 (371)
T ss_dssp             TCEEEEECTTCTTCE----ETTEETTSSSSEEEEECCTTSSSCCSS--CEEEEESCHHHHHHHHHHTBTTEEESSSSCEE
T ss_pred             chhhccchhhccCce----eccccCCcccccccccccccccccccc--ceEEEeechhhhhhcccccccccccccccccc
Confidence            999999999982111    1111223334555444    8777553  344555 45666655321              


Q ss_pred             --CCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCcee-----eEEEEeeeEEEEeccCCC
Q 017259          223 --EHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVK-----EVRGRGLFNAVEFDKTAL  295 (374)
Q Consensus       223 --~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-----~~~~~g~~~~~~~~~~~~  295 (374)
                        ..+..+.++.+.++.++..|+.+  +++.++.+++.+++.+.|...    +.+..     ........+.+.+.... 
T Consensus       221 ~~~~G~n~r~sel~Aaigl~qL~~l--~~~~~~R~~~~~~y~~~l~~~----~~~~~~~~~~~~~~~~~~~~i~~~~~~-  293 (371)
T d2fnua1         221 VKSIGHNFRLNEIQSALGLSQLKKA--PFLMQKREEAALTYDRIFKDN----PYFTPLHPLLKDKSSNHLYPILMHQKF-  293 (371)
T ss_dssp             ESSCCCBCCCCHHHHHHHHHHHTTH--HHHHHHHHHHHHHHHHHHTTC----SSEEESGGGCSSCCCCSCEEEEECGGG-
T ss_pred             cccccccccccchhhhhhhhhhhhc--cchhhhhhhhhhhhccccccc----ccccccccccccccccccccccccccc-
Confidence              12456677888888777777654  334555556666665655442    21111     11222333333343211 


Q ss_pred             chhHHHHHHHHHHCCeEeccCC-------------------------CCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          296 PVSAYDICLKMKERGILAKPTH-------------------------DTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       296 ~~~~~~~~~~l~~~Gi~v~~~~-------------------------~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ....+++.+.|.++||.+++..                         ...+.+-++..++++|++++++.|.+.++
T Consensus       294 ~~~r~~~~~~L~~~gI~~~~~y~pl~~~~~~~~~~~~~~~pnae~~~~~~l~LP~~~~lt~~di~~I~~~i~~~~~  369 (371)
T d2fnua1         294 FTCKKLILESLHKRGILAQVHYKPIYQYQLYQQLFNTAPLKSAEDFYHAEISLPCHANLNLESVQNIAHSVLKTFE  369 (371)
T ss_dssp             GGGHHHHHHHHHHTTEECBCCCCCGGGSHHHHHHHCCCCCHHHHHHHHHEEEECCCTTCCHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCCcceeCcccccCHHHHhccccCCCHHHHHHHhCeEECcCCCCCCHHHHHHHHHHHHHHHH
Confidence            1246789999999999886421                         25677766677899999999999999886

>d1qz9a_ c.67.1.3 (A:) Kynureninase {Pseudomonas fluorescens [TaxId: 294]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Kynureninase
species: Pseudomonas fluorescens [TaxId: 294]

Probab=99.80  E-value=2.5e-18  Score=159.52  Aligned_cols=294  Identities=16%  Similarity=0.111  Sum_probs=189.1

Q ss_pred             CcHHHHHHHHhcccCC--CeEEecCChHHHHHHHHHHHHHc-ccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGY--DMVLPMNTGAEGVETALKLARKW-GYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~--~~~~~~~~gs~a~~~al~~~~~~-~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +..++..++++++.|.  +++++++|+|++++.++...... ....+|     +.+++.+..++...........    .
T Consensus        70 ~~~e~~R~~iA~llga~~~ei~~~~~~T~~~~~~~~~~~~~~~~~~~~-----~~vi~~~~~~~~~~~~~~~~~~----~  140 (404)
T d1qz9a_          70 DLSERLGNRLATLIGARDGEVVVTDTTSINLFKVLSAALRVQATRSPE-----RRVIVTETSNFPTDLYIAEGLA----D  140 (404)
T ss_dssp             GHHHHHHHHHHTTTTCCTTSEEECSCHHHHHHHHHHHHHHHHHHHSTT-----CCEEEEETTSCHHHHHHHHHHH----H
T ss_pred             HHHHHHHHHHHHHhCCCCCcEEEecCchHHHHHHhhhhhhhhcccCCC-----cEEEEeccccchHHHHHHhhhh----e
Confidence            5667899999998855  58999999999998877644211 112334     6677777665443222211111    1


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ....+    .......++++++++++   ++|+++.+..+++.+|.+.|    +++|+++|+++|+.+++|.+|+ ++  
T Consensus       141 ~~~~~----~~~~~~~~~~~~~~~i~---~~T~lV~i~~v~~~tG~~~p----v~~i~~~~~~~~~~~~vD~~q~-~g--  206 (404)
T d1qz9a_         141 MLQQG----YTLRLVDSPEELPQAID---QDTAVVMLTHVNYKTGYMHD----MQALTALSHECGALAIWDLAHS-AG--  206 (404)
T ss_dssp             HHCSS----CEEEEESSGGGHHHHCS---TTEEEEEEESBCTTTCBBCC----HHHHHHHHHHHTCEEEEECTTT-TT--
T ss_pred             eeeec----eeccccccchhHHHhcC---CCceEEEEecccccccceec----HHHHhccccccccceeEEeecc-cc--
Confidence            11111    11111126777887776   78999999999999999999    9999999999999999999998 21  


Q ss_pred             ccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCC-----------------------CCCCCCCH
Q 017259          178 GRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEH-----------------------GSTFGGNP  232 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~-----------------------~~~~~~~~  232 (374)
                       . .........+|+.++|  |.+.+|...+|++..++.+.+.+.+...                       ......+.
T Consensus       207 -~-~~~~~~~~~~d~~~~s~~K~~~~~~g~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  284 (404)
T d1qz9a_         207 -A-VPVDLHQAGADYAIGCTYKYLNGGPGSQAFVWVSPQLCDLVPQPLSGWFGHSRQFAMEPRYEPSNGIARYLCGTQPI  284 (404)
T ss_dssp             -T-SCCCHHHHTCSEEEECSSSTTCCCTTCCCEEEECTTTTTTSCCSCCCGGGBCTTSCCCSSCCBCSSGGGGCCSCCCH
T ss_pred             -c-cccccccccceEEEEechhhcccCCceEEEEEechhhhhhCCccccccCCccccccccccccccccchhhhhhhccc
Confidence             1 1222223455666554  8776543134566677666555432110                       01123455


Q ss_pred             HHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCcee----eEEEEeeeEEEEeccCCCchhHHHHHHH
Q 017259          233 LASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVK----EVRGRGLFNAVEFDKTALPVSAYDICLK  305 (374)
Q Consensus       233 ~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----~~~~~g~~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      .+.....++++.+...   .+.++.+...+.+.+.+..+... +++..    .....+.++.|.++      ++.++.+.
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~l~~~~~~~-~~~~i~~p~~~~~r~~~vsf~~~------~~~~v~~~  357 (404)
T d1qz9a_         285 TSLAMVECGLDVFAQTDMASLRRKSLALTDLFIELVEQRCAA-HELTLVTPREHAKRGSHVSFEHP------EGYAVIQA  357 (404)
T ss_dssp             HHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHHHTT-SCCEECSCSSGGGBCSEEEEECT------THHHHHHH
T ss_pred             hhHHHHHHHHHHHHHhhHHHHHHHHHHhHHHHHHHHHhhccC-CCEEEECCCCccceeeEEEEecC------CHHHHHHH
Confidence            6666666666665442   44555555666655555554433 22221    12223556666554      46789999


Q ss_pred             HHHCCeEeccCCCCEEEEecC-CCCCHHHHHHHHHHHHHHHh
Q 017259          306 MKERGILAKPTHDTIVRLTPP-LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       306 l~~~Gi~v~~~~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |.++||++....++.|||+|. +.+|++|++++++.|+++++
T Consensus       358 L~~~gi~~~~r~~~~lRiS~~h~ynt~~did~~~~~L~~vl~  399 (404)
T d1qz9a_         358 LIDRGVIGDYREPRIMRFGFTPLYTTFTEVWDAVQILGEILD  399 (404)
T ss_dssp             HHTTTEECEEETTTEEEEECCTTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHCCCEEeecCCCeEEEECCCCCCCHHHHHHHHHHHHHHHH
Confidence            999999886666789999994 68999999999999999998

>d2z67a1 c.67.1.9 (A:1-434) Selenocysteinyl-tRNA synthase (SepSecS) {Methanococcus maripaludis [TaxId: 39152]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Methanococcus maripaludis [TaxId: 39152]

Probab=99.79  E-value=3.2e-18  Score=160.37  Aligned_cols=288  Identities=12%  Similarity=0.090  Sum_probs=173.9

Q ss_pred             HHHhcccCCC-eE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCCC
Q 017259           28 ERLTSMFGYD-MV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLLP  105 (374)
Q Consensus        28 ~~l~~~~~~~-~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~~  105 (374)
                      .++++.+|.+ .. +...++++++.+++.+.+..   .++     ++|++.... |.....+....+.....       .
T Consensus       120 ~~~~~~~g~~~~~~~~~~~t~~~~~~~l~a~r~~---~~~-----~~vi~s~~~-H~s~~k~~~~~g~~~~~-------v  183 (434)
T d2z67a1         120 ESFFKQLGLNVHAIATPISTGMSISLCLSAARKK---YGS-----NVVIYPYAS-HKSPIKAVSFVGMNMRL-------V  183 (434)
T ss_dssp             HHHHHHTTCCCEEEEESSCHHHHHHHHHHHHHHH---HCC-----CEEEEECCC-CHHHHHHHHHTTCEEEE-------E
T ss_pred             HHHHHhcCCCcceeecCcHHHHHHHHHHHHHHHh---hcC-----ceEEEeccC-CHHHHHHHHHhCCcceE-------E
Confidence            4455556554 34 44455555666666665432   233     788887776 55444444333321111       0


Q ss_pred             Cceecc---CCCHHHHHHHHHhc--CCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc-cccc
Q 017259          106 GHLKVD---FGDITALEKIFKES--GDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA-RSGR  179 (374)
Q Consensus       106 ~~~~~~---~~d~~~le~~l~~~--~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~-~~g~  179 (374)
                      ......   ..|+++|+++|+++  ..++.+++++.+.+.+|.+.+    +++|.++|++||+++++|++|+++. ..+.
T Consensus       184 ~~~~~~~~~~~d~~~l~~~i~~~~~~~~~~~v~~~~~~~~~g~~~~----l~~i~~~~~~~~~~l~vD~a~g~~~~~~~~  259 (434)
T d2z67a1         184 ETVLDGDRVYVPVEDIENAIKKEIELGNRPCVLSTLTFFPPRNSDD----IVEIAKICENYDIPHIINGAYAIQNNYYLE  259 (434)
T ss_dssp             CCEEETTEEECCHHHHHHHHHHHHHTTCCEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred             EeecCCCccCCCHHHHHHHHHhhhhcCCceEEEeccCcCCCccccC----HHHHHHHHHHhCCeEEEeccchhhhhhccc
Confidence            000000   12899999999864  246778888887777888888    9999999999999999999997431 1111


Q ss_pred             CcccccCCCCCcEEEec--ccccCCccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHH
Q 017259          180 MLASDWEEVRPDMVILG--KALGGGVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAH  256 (374)
Q Consensus       180 ~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~  256 (374)
                       +.........|++++|  |.++++. +.|++.. ++.+.+.+.......+...+...+.+++..+......++.++..+
T Consensus       260 -~~~~~~~~~~D~~~~s~hK~l~~~~-g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~l~~~~~~g~~~~~~~~~~  337 (434)
T d2z67a1         260 -KLKKAFKYRVDAVVSSSDKNLLTPI-GGGLVYSTDAEFIKEISLSYPGRASATPVVNTLVSLLSMGSKNYLELVKNQKN  337 (434)
T ss_dssp             -HHHHHHTSCCSEEEEEHHHHHCCCS-SCEEEEESCHHHHHHHHTTSCSCBCSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -cccccccCCcceEEEcCccccccCC-CccccccCcHHHHHHHHhhcccccccchHHHHHHHHHHHHHhcchhHHHHHHH
Confidence             1111123456777666  9888665 5556554 456677766543333333333333333333332222356677778


Q ss_pred             HHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc---------------CCCCEE
Q 017259          257 LGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP---------------THDTIV  321 (374)
Q Consensus       257 ~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~---------------~~~~~l  321 (374)
                      +.++++++|+++.... +...........+.+.+..     +..++...|.++||....               ...+++
T Consensus       338 ~a~~l~~~L~~l~~~~-g~~ll~~~~~~~~~~~~~~-----~~~~l~~~L~~~gI~g~~v~~~l~~~g~~~~~~~~~~~l  411 (434)
T d2z67a1         338 SKKLLDELLNDLSKKT-GGKFLDVESPIASCISVNS-----DPVEIAAKLYNLRVTGPRGIKKTDHFGNCYLGTYTHDYI  411 (434)
T ss_dssp             HHHHHHHHHHHHHHHS-SCCBCCCCCSSEEEEECSS-----CHHHHHHHHHHTTEESCEEECTTCHHHHTCSSCCSCCEE
T ss_pred             HHHHHHHHHHHhhhhc-CceecCCCCCceeeeecCC-----CHHHHHHHHHHcCCeeeehhhhccccCeeeecccCCCeE
Confidence            8888889898876543 1111111122222222322     578899999999985421               125789


Q ss_pred             EEecCCCCCHHHHHHHHHHHHH
Q 017259          322 RLTPPLSISSNELQEGSKALHD  343 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~  343 (374)
                      |++++..+|+||+|+++++|++
T Consensus       412 ~~~~s~~~T~edID~~i~~L~k  433 (434)
T d2z67a1         412 VMNAAIGVRTEDIVNSVSKLEK  433 (434)
T ss_dssp             EEECCTTCCHHHHHHHHHHHHT
T ss_pred             EEecCCCCCHHHHHHHHHHHhc
Confidence            9999999999999999999975

>d1svva_ c.67.1.1 (A:) Low-specificity threonine aldolase {Leishmania major [TaxId: 5664]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: AAT-like
domain: Low-specificity threonine aldolase
species: Leishmania major [TaxId: 5664]

Probab=99.79  E-value=1.9e-19  Score=161.10  Aligned_cols=302  Identities=11%  Similarity=0.029  Sum_probs=164.3

Q ss_pred             cCCCCCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           16 RAFYNDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        16 ~~~~~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      +++..+..+++++++++++|.+  +++||+|||+|++.++..+     ..++     ++++.....++............
T Consensus        30 ~y~~~~~~~~lr~~ia~~~g~~~~~v~~tsggtean~~a~~~~-----~~~~-----~~~~~~~~~~~~~~~~~~~~~~~   99 (340)
T d1svva_          30 GYGQDSHCAKAARLIGELLERPDADVHFISGGTQTNLIACSLA-----LRPW-----EAVIATQLGHISTHETGAIEATG   99 (340)
T ss_dssp             STTCSHHHHHHHHHHHHHHTCTTSEEEEESCHHHHHHHHHHHH-----CCTT-----EEEEEETTSHHHHSSTTHHHHTT
T ss_pred             CCCCCHHHHHHHHHHHHHhCCCcceEEEcCCHHHHHHHHHHHH-----hhhc-----cccccccccceeeeecccccccc
Confidence            3455677788999999998754  8999999999999999987     4555     77777777665443332222221


Q ss_pred             ccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           94 NEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        94 ~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ..... ..+      .....+.+...++...   ....+..+++....+++|.+. ..+.+..+.++|+++|.++++|++
T Consensus       100 ~~~~~-~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~~d~a  171 (340)
T d1svva_         100 HKVVT-APC------PDGKLRVADIESALHENRSEHMVIPKLVYISNTTEVGTQY-TKQELEDISASCKEHGLYLFLDGA  171 (340)
T ss_dssp             CCEEE-ECC------TTSCCCHHHHHHHHHHSCSTTSCEEEEEEEESSCTTSCCC-CHHHHHHHHHHHHHHTCEEEEECT
T ss_pred             eeeee-ccc------ccccccchhHHHHhhhhhcccCCcceeeeecccccccccc-cHHHhhhhhcccccccceeeeecc
Confidence            11110 000      0001123333333322   112344555555556666665 677899999999999999999999


Q ss_pred             ccCCcc--cccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          171 QSGLAR--SGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       171 ~~~~~~--~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +.+...  .+.............+.++++..+++....++..............  ....+........+++...++...
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~~~~~~~~  251 (340)
T d1svva_         172 RLASALSSPVNDLTLADIARLTDMFYIGATKAGGMFGEALIILNDALKPNARHLIKQRGALMAKGWLLGIQFEVLMKDNL  251 (340)
T ss_dssp             THHHHHTSTTCCCCHHHHHHHCSEEEEECTTTTCSSCEEEEECSGGGCTTHHHHHHHTTCCCTTTHHHHHHHHHHTSTTH
T ss_pred             ceeeeecccccccccccccccceeeecCCccccccccccccccchhhhhhhhhhcccccCccchhhHHHHHHHHHhhhhH
Confidence            974211  1111111111112234555554443221222222232222222111  122223333333333333332211


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCCCEEEEecC
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHDTIVRLTPP  326 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~  326 (374)
                      .....++...+.+++++.++..+     +....+..++++++.++..    ...++.+.+...|+.+.+.+.+.+|++++
T Consensus       252 ~~~~~~~~~~~~~~~~~~l~~~g-----~~~~~p~~~~~v~~~~~~~----~~~~l~~~~~~~~~~~~~~~~~~vR~s~~  322 (340)
T d1svva_         252 FFELGAHSNKMAAILKAGLEACG-----IRLAWPSASNQLFPILENT----MIAELNNDFDMYTVEPLKDGTCIMRLCTS  322 (340)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHTT-----CCBSSCCSSSEECBEEEHH----HHHHHTTTEECEEEEEETTTEEEEEEECC
T ss_pred             HHHHHHHHHHHHhhhHHHHhcCC-----CeeecCCCceEEEEeCCHH----HHHHHHHhhhhhcccccCCCCcEEEEECC
Confidence            22445556666666666666543     2222234456666655432    33333333333355666677889999999


Q ss_pred             CCCCHHHHHHHHHHHHHH
Q 017259          327 LSISSNELQEGSKALHDV  344 (374)
Q Consensus       327 ~~~~~e~i~~~~~~l~~~  344 (374)
                      ..+|++|||+++++|+++
T Consensus       323 ~~~t~edid~~l~~l~~l  340 (340)
T d1svva_         323 WATEEKECHRFVEVLKRL  340 (340)
T ss_dssp             TTCCHHHHHHHHHHHHHC
T ss_pred             CCCCHHHHHHHHHHHhcC
Confidence            999999999999999863

>d1c4ka2 c.67.1.5 (A:108-569) Ornithine decarboxylase major domain {Lactobacillus sp., strain 30a [TaxId: 1591]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Ornithine decarboxylase major domain
domain: Ornithine decarboxylase major domain
species: Lactobacillus sp., strain 30a [TaxId: 1591]

Probab=99.79  E-value=1.6e-18  Score=163.77  Aligned_cols=315  Identities=11%  Similarity=-0.015  Sum_probs=182.1

Q ss_pred             CCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC-ccccc
Q 017259           20 NDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-NEAIR   98 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~~~~~   98 (374)
                      .....++++.+++++|.++++|++|||++.+.|+....    .++|     |+||+.+.++.+....+..+.+. +.+..
T Consensus        65 ~~~i~eae~~~A~~~ga~~a~f~~~Gtt~~n~a~i~a~----~~~g-----d~Vi~~~~~H~Sv~~~~~~l~~~~~~~~~  135 (462)
T d1c4ka2          65 EGPAVAAEKHAARVYNADKTYFVLGGSSNANNTVTSAL----VSNG-----DLVLFDRNNHKSVYNSALAMAGGRPVYLQ  135 (462)
T ss_dssp             BTHHHHHHHHHHHHTTCSEEEEESSHHHHHHHHHHHHH----CCTT-----CEEEEETTCCHHHHHHHTTTTCCEEEEEC
T ss_pred             CHHHHHHHHHHHHHhCCCeEEEECCchHHHHHHHHHHh----cCCC-----CeEEecccchHHHHHHHHHHhcCCceeee
Confidence            44577899999999999999999999887776654443    7788     99999998853333333333322 11111


Q ss_pred             -cCCCCCCCceeccCC-CHHHHHHHHH------hcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           99 -GFGPLLPGHLKVDFG-DITALEKIFK------ESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        99 -~~~~~~~~~~~~~~~-d~~~le~~l~------~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                       ...+........+-. +.+.+++.+.      ....++..+++...++..|.+.+    +++|+++|++||++|++|++
T Consensus       136 ~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~~~~~~~G~~~d----l~~I~~ia~~~g~~l~vD~A  211 (462)
T d1c4ka2         136 TNRNPYGFIGGIYDSDFDEKKIRELAAKVDPERAKWKRPFRLAVIQLGTYDGTIYN----AHEVVKRIGHLCDYIEFDSA  211 (462)
T ss_dssp             EEECTTCCEEEECGGGSCHHHHHHHTTTSSHHHHTCSCCBSEEEEESBCTTSEEEC----HHHHHHHHGGGBSEEEEECT
T ss_pred             cccccccccCCCChHHhhHHHHHhhhhhhcHHhhhccCCceeEEEEeeeeccchhh----HHHHHHHHHHcCCEEEEech
Confidence             111110000000000 2222222111      11234555556666677899998    99999999999999999999


Q ss_pred             ccCC-ccccc-CcccccC------CCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCC----------CCCCCCCC
Q 017259          171 QSGL-ARSGR-MLASDWE------EVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG----------EHGSTFGG  230 (374)
Q Consensus       171 ~~~~-~~~g~-~~~~~~~------~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~----------~~~~~~~~  230 (374)
                      |+.. ...+. .......      ....|++++|  |.+++.. ..+.+..++.........          ....+.++
T Consensus       212 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~D~~~~S~HK~lg~~~-~g~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~t~sp  290 (462)
T d1c4ka2         212 WVGYEQFIPMMRNSSPLLIDDLGPEDPGIIVVQSVHKQQAGFS-QTSQIHKKDSHIKGQLRYCDHKHFNNSFNLFMSTSP  290 (462)
T ss_dssp             TCCGGGSSGGGGGGCTTSCCCCCTTSCEEEEEECHHHHSSCCT-TCEEEEEECGGGTTSTTCCCHHHHHHHHHHHSCSSC
T ss_pred             hhccccccCcCCcchhhccccccccCCccEEEEecCccccccc-ceEEEEeccccccccchhhhHHHHHHhhhhcccCCc
Confidence            9832 11111 1011111      1233677665  8887432 222333343332221110          01234455


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceee-E---------------------------
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKE-V---------------------------  279 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-~---------------------------  279 (374)
                      +...+++..++...+..+   ++.++..++.+++++++.++...+...... .                           
T Consensus       291 ~~~~~asl~~a~~~~~~~~g~~l~~~~~~~a~~~r~~l~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~  370 (462)
T d1c4ka2         291 FYPMYAALDVNAAMQEGEAGRKLWHDLLITTIEARKKLIKAGSMFRPFVPPVVNGKKWEDGDTEDMANNIDYWRFEKGAK  370 (462)
T ss_dssp             CHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHHTTCSSEESSCSEETTEEGGGSCHHHHTTCGGGGBCCTTCT
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhcccccccccccccccchHhhhcccchhccCCcch
Confidence            666666666666655432   456677778888888887754221000000 0                           


Q ss_pred             ------------EEEeeeEEEEeccC--------CCchhHHHHHHHHHHCCeEeccCCCCEEEEecCCCCCHHHHHHHHH
Q 017259          280 ------------RGRGLFNAVEFDKT--------ALPVSAYDICLKMKERGILAKPTHDTIVRLTPPLSISSNELQEGSK  339 (374)
Q Consensus       280 ------------~~~g~~~~~~~~~~--------~~~~~~~~~~~~l~~~Gi~v~~~~~~~lRi~~~~~~~~e~i~~~~~  339 (374)
                                  .-...-+.+..+..        ..+..+.++.+.|.++||.+...+.+.+|+.++..+|+++++++++
T Consensus       371 ~~~~~~~~~~~~~~Dp~k~~l~~~gi~~~~g~~~~~G~~~~~~~~~L~~~gI~~e~~~~~~i~~~~s~~~T~edid~li~  450 (462)
T d1c4ka2         371 WHAYEGYGDNQYYVDPNKFMLTTPGINPETGDYEDFGVPATIVANYLRDHGIIPEKSDLNSILFLMTPAETPAKMNNLIT  450 (462)
T ss_dssp             TTCCTTCCTTCEEECTTEEEEECSSEETTTTEECSSCCCHHHHHHHHHHTTCCCSEECSSEEEEECCTTCCHHHHHHHHH
T ss_pred             hccccccCccceecccceeEEecCCccccccchhhcCCcHHHHHHHHHHcCCeeeccCCCeEEEEecCCCCHHHHHHHHH
Confidence                        00000112211110        0123578899999999998887788999999999999999999999


Q ss_pred             HHHHHHhccC
Q 017259          340 ALHDVLELDL  349 (374)
Q Consensus       340 ~l~~~~~~~~  349 (374)
                      +|+++.+ .+
T Consensus       451 aL~ei~r-~~  459 (462)
T d1c4ka2         451 QLLQLQR-LI  459 (462)
T ss_dssp             HHHHHHH-HH
T ss_pred             HHHHHHH-HH
Confidence            9998876 44

>d2ch1a1 c.67.1.3 (A:2-389) 3-hydroxykynurenine transaminase {Malaria mosquito (Anopheles gambiae) [TaxId: 7165]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: 3-hydroxykynurenine transaminase
species: Malaria mosquito (Anopheles gambiae) [TaxId: 7165]

Probab=99.79  E-value=7e-18  Score=155.59  Aligned_cols=294  Identities=13%  Similarity=0.106  Sum_probs=187.4

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc-CCcc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS-CDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~-~~~~   95 (374)
                      .+.+++..+.|+++++.+   .++++.|||.+++.++..+     ..+|     +++++...+.++......... +...
T Consensus        49 ~~i~~~~r~~L~~ll~~~~~~~i~~~gsgT~a~ea~~~~l-----~~~~-----~~vl~~~~g~~~~~~~~~~~~~~~~~  118 (388)
T d2ch1a1          49 FRTMDEVKDGLRYIFQTENRATMCVSGSAHAGMEAMLSNL-----LEEG-----DRVLIAVNGIWAERAVEMSERYGADV  118 (388)
T ss_dssp             HHHHHHHHHHHHHHHTCCCSCEEEESSCHHHHHHHHHHHH-----CCTT-----CEEEEEESSHHHHHHHHHHHHTTCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCeEEEEcCcHHHHHHHHHHHh-----cccc-----ccccccccccccccchhhhhhhcccc
Confidence            456778888998887544   4677889999999999988     4555     777776655444332222211 1111


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ......+       ....+.+..++.+...  +++++.+....+.+|.+.+    ++++.++|+++|.++++|.+++-. 
T Consensus       119 ~~~~~~~-------~~~~~~~~~~~~~~~~--~~~~v~~~~~~t~tG~~~~----~~~i~~~~~~~~~~~~vD~~ss~g-  184 (388)
T d2ch1a1         119 RTIEGPP-------DRPFSLETLARAIELH--QPKCLFLTHGDSSSGLLQP----LEGVGQICHQHDCLLIVDAVASLC-  184 (388)
T ss_dssp             EEEECCT-------TSCCCHHHHHHHHHHH--CCSEEEEESEETTTTEECC----CTTHHHHHHHTTCEEEEECTTTBT-
T ss_pred             ccccccc-------ccccchhhhhhhhccC--Ccceeeeeecccccccccc----hhhhcchhccccceeeeeeeeccc-
Confidence            1000000       0001456666655543  6778888888899999999    999999999999999999999822 


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCC-----------------------CCCCCCCC
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG-----------------------EHGSTFGG  230 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~-----------------------~~~~~~~~  230 (374)
                        +.  ..+..++..|++++|  |+++|.- .+|+++.++...+.....                       .....+..
T Consensus       185 --~~--pid~~~~~~d~~~~s~~K~~~gp~-G~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~  259 (388)
T d2ch1a1         185 --GV--PFYMDKWEIDAVYTGAQKVLGAPP-GITPISISPKALDVIRNRRTKSKVFYWDLLLLGNYWGCYDEPKRYHHTV  259 (388)
T ss_dssp             --TB--CCCTTTTTCCEEECCCC-CCCCCS-SCEEEEECHHHHHHHHTCSSCCSCGGGCHHHHHHHTTCSSSCCCCCCCC
T ss_pred             --cc--ccchhccCceEEEEccccccCCCC-eEEEEeccHHHHHhhhcccCccccccccchhhhhhhcccccccccCccc
Confidence              11  223335567888777  7777655 667788887666544321                       01223455


Q ss_pred             CHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDEKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      +.....++.++++.+......   .+.+......+..+....... ...........++.|.+++..   +..++.+.|+
T Consensus       260 ~~~~i~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~rs~~v~~~~~p~g~---~~~~l~~~l~  335 (388)
T d2ch1a1         260 ASNLIFALREALAQIAEEGLENQIKRRIECAQILYEGLGKMGLDI-FVKDPRHRLPTVTGIMIPKGV---DWWKVSQYAM  335 (388)
T ss_dssp             CHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHTCCB-SSCSGGGBCTTEEEEECCTTC---CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhhhhhccccc-ccCCHHHhCCeEEEEECCCCC---CHHHHHHHHh
Confidence            777777777777776554332   222233333333333332111 011122233456677776654   7889999997


Q ss_pred             HC-CeEeccCC----CCEEEEe-cCCCCCHHHHHHHHHHHHHHHh
Q 017259          308 ER-GILAKPTH----DTIVRLT-PPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~-Gi~v~~~~----~~~lRi~-~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ++ ||.++++.    ++.|||+ ++..++.|++++++++|+++++
T Consensus       336 ~~~gI~v~~G~~~~~~~~~RIs~~g~~~t~edI~~ll~alke~L~  380 (388)
T d2ch1a1         336 NNFSLEVQGGLGPTFGKAWRVGIMGECSTVQKIQFYLYGFKESLK  380 (388)
T ss_dssp             HHHCBCCBCCCGGGTTTEEEEECCGGGCSHHHHHHHHHHHHHHHH
T ss_pred             hcCCEEEeCCCccccCCEEEEcCCcCCCCHHHHHHHHHHHHHHHH
Confidence            65 99998752    5689999 6777899999999999999998

>d3bc8a1 c.67.1.9 (A:23-467) Selenocysteinyl-tRNA synthase (SepSecS) {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: SepSecS-like
domain: Selenocysteinyl-tRNA synthase (SepSecS)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.79  E-value=1.4e-18  Score=163.37  Aligned_cols=303  Identities=12%  Similarity=0.025  Sum_probs=180.3

Q ss_pred             HHHHHhcccCCC---eEEecCChHHHHHHHH-HHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCC
Q 017259           26 FAERLTSMFGYD---MVLPMNTGAEGVETAL-KLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG  101 (374)
Q Consensus        26 l~~~l~~~~~~~---~~~~~~~gs~a~~~al-~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  101 (374)
                      +.+++++.+|.+   ..+++++|+++...++ .+++..  ..++     ++||++... |.....+..+.+.........
T Consensus        99 ~~~~~~~l~g~~~~~~~~~~~~~t~~~~~~~l~a~~~~--~~~~-----~~vi~~~~~-H~s~~~a~~~~g~~~~~v~~~  170 (445)
T d3bc8a1          99 LVLNVIKLAGVHSVASCFVVPMATGMSLTLCFLTLRHK--RPKA-----KYIIWPRID-QKSCFKSMVTAGFEPVVIENV  170 (445)
T ss_dssp             HHHHHHHHHTCTTCCEEEEESSCHHHHHHHHHHHHHHH--CTTC-----CEEEEECCC-CHHHHHHHHHTTCEEEEECCE
T ss_pred             HHHHHHHHhCCCcccCccccccchHHHHHHHHHHHHHh--CCCC-----CEEEEcCcc-cHHHHHHHHHcCCeeEEEEee
Confidence            555666666543   5778888886555444 444332  2233     788887766 555555444443211110000


Q ss_pred             CCCCCceeccCCCHHHHHHHHHhcC-CcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc-cccc
Q 017259          102 PLLPGHLKVDFGDITALEKIFKESG-DQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA-RSGR  179 (374)
Q Consensus       102 ~~~~~~~~~~~~d~~~le~~l~~~~-~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~-~~g~  179 (374)
                      +......    -|+++|+++|++.. ++++++++..+.+++|.+.+    +++|.++|++||+++|+|++|++.. ....
T Consensus       171 ~~~~~~~----id~~~l~~~i~~~~~~~~~~v~~~~~~~~~G~~~~----~~~i~~~~~~~~~~l~vD~a~~~~~~~~~~  242 (445)
T d3bc8a1         171 LEGDELR----TDLKAVEAKIQELGPEHILCLHSTTACFAPRVPDR----LEELAVICANYDIPHVVNNAYGLQSSKCMH  242 (445)
T ss_dssp             EETTEEE----CCHHHHHHHHHHHCGGGEEEEEEESSCCTTBCCCC----HHHHHHHHHHHTCCEEEECTTTTTCHHHHH
T ss_pred             ccCcccc----cCHHHHHHHHHhccccCeEEEEEeCCCCCCeeehh----HHHHHHHHHHhCCcEEEEccchhhhhhccc
Confidence            0000011    18999999998753 46889999888888998888    9999999999999999999998431 1111


Q ss_pred             C--cccccCCCCCcEEEec--ccccCCccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh---hcHH
Q 017259          180 M--LASDWEEVRPDMVILG--KALGGGVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD---EKLA  251 (374)
Q Consensus       180 ~--~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~---~~~~  251 (374)
                      .  +....  -..|++++|  |.++++. +.|+++.+ +.+.+.+.....+..   +......++..+..+..   ....
T Consensus       243 ~~~~~~~~--~~vd~~~~s~hK~~~~p~-g~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~g~~~~~~~~  316 (445)
T d3bc8a1         243 LIQQGARV--GRIDAFVQSLDKNFMVPV-GGAIIAGFNEPFIQDISKMYPGRA---SASPSLDVLITLLSLGCSGYRKLL  316 (445)
T ss_dssp             HHHHHHHH--SCCCEEEEEHHHHHSCCS-SCEEEEESCHHHHHHHHHHSCSCB---CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhccCc--CCcceEEecCccccccCC-CCceeeeCChHHHHHHHHHHhhcc---cCcchHHHHHHHHHHhhhcchhhH
Confidence            1  11111  134676665  8888766 66666664 455554442212222   22222233334433333   2455


Q ss_pred             HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCC--CchhHHHHHHHHHHCCeEecc----C---------
Q 017259          252 ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTA--LPVSAYDICLKMKERGILAKP----T---------  316 (374)
Q Consensus       252 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~--~~~~~~~~~~~l~~~Gi~v~~----~---------  316 (374)
                      +....+.+++.+.|+++.......+..........++.+....  ...+..++...|.+.||....    .         
T Consensus       317 ~~~~~~~~~~~~~L~~l~~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~l~~~L~~~gI~~~~~~~~~~~~~i~~~~  396 (445)
T d3bc8a1         317 KERKEMFVYLSTQLKKLAEAHNERLLQTPHNPISLAMTLKTIDGHHDKAVTQLGSMLFTRQVSGARAVPLGNVQTVSGHT  396 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCBCCCTTCSSEEEEECTTTSSSSSCHHHHHHHHHHHTTCCSCEEECSCCEEEETTEE
T ss_pred             HHHHHHHHHHHHHHHHHHhhcCceeecCCCCCcceEEEeeeccccCCCCHHHHHHHHHHcCCCcceeeccccccchhhhh
Confidence            6666777788888888765432222223233333333332211  123677888899998873211    0         


Q ss_pred             -----------CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          317 -----------HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       317 -----------~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                                 ....+|++++..+|++|+|+++++|+++++ ++++
T Consensus       397 ~~~~g~~~~~~~~~~i~i~~~~~~T~eDID~~v~~L~kilk-~~rk  441 (445)
T d3bc8a1         397 FRGFMSHADNYPCAYLNAAAAIGMKMQDVDLFIKRLDKCLN-IVRK  441 (445)
T ss_dssp             EETTTTTSSCCSSCEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHH
T ss_pred             hhhcCCCCccCCCCeEEEeCcCCCCHHHHHHHHHHHHHHHH-HHHh
Confidence                       135699999999999999999999999998 7644

>d2bkwa1 c.67.1.3 (A:3-384) Alanine-glyoxylate aminotransferase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Alanine-glyoxylate aminotransferase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.78  E-value=2.4e-18  Score=158.48  Aligned_cols=297  Identities=11%  Similarity=0.069  Sum_probs=191.0

Q ss_pred             cHHHHHHHHhcccC------CCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCC-c
Q 017259           22 KFPVFAERLTSMFG------YDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCD-N   94 (374)
Q Consensus        22 ~~~~l~~~l~~~~~------~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~-~   94 (374)
                      .+.++.+.+.+.++      .+.++||+|||++++.++..+...  .++|     |++++...++++........... .
T Consensus        37 ~~~~~~~~~r~~~~~~~~~~~~~i~~t~sgT~a~~~~~~~l~~~--~~~g-----d~vlv~~~~~~~~~~~~~~~~~~~~  109 (382)
T d2bkwa1          37 IFQRVLKNTRAVFKSAAASKSQPFVLAGSGTLGWDIFASNFILS--KAPN-----KNVLVVSTGTFSDRFADCLRSYGAQ  109 (382)
T ss_dssp             HHHHHHHHHHHHTTCCGGGTCEEEEEESCTTHHHHHHHHHHSCT--TCSC-----CEEEEECSSHHHHHHHHHHHHTTCE
T ss_pred             HHHHHHHHHHHHHhhhcCCCCeEEEEeCcHHHHHHHHHHHHHHh--cCCC-----CceEEEEechhhhhhhhhccccccc
Confidence            34455566666543      346899999999999999988421  3456     88888887766644333222111 1


Q ss_pred             cccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC--CEEEEecccc
Q 017259           95 EAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQS  172 (374)
Q Consensus        95 ~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~--i~li~Dea~~  172 (374)
                      .......+      .-...+.+.+++.+.+  ++++.+++....+++|...+    ++++.++|++++  +++++|.+++
T Consensus       110 ~~~~~~~~------~~~~~~~~~~~~~~~~--~~~~~v~~~~~~~~tg~~~~----~~~~~~~~~~~~~~~~~~vDa~qs  177 (382)
T d2bkwa1         110 VDVVRPLK------IGESVPLELITEKLSQ--NSYGAVTVTHVDTSTAVLSD----LKAISQAIKQTSPETFFVVDAVCS  177 (382)
T ss_dssp             EEEECCSS------TTSCCCHHHHHHHHHH--SCCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTSEEEEECTTT
T ss_pred             cccccccC------CCCccchhHHHHHhhh--ccchheeeeecccccccccc----chhhhhhccccccceeeeeecccc
Confidence            11000000      0011257777777765  36778888889999999999    999999988765  9999999998


Q ss_pred             CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCC--------------------------CC
Q 017259          173 GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG--------------------------EH  224 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~--------------------------~~  224 (374)
                       ++  ..  .++...+..|++++|  |+++|.. ++|+++.++++.+.+.+.                          ..
T Consensus       178 -~g--~~--pid~~~~giD~~~~s~~K~l~gP~-G~g~l~vs~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (382)
T d2bkwa1         178 -IG--CE--EFEFDEWGVDFALTASQKAIGAPA-GLSISLCSSRFMDYALNDSKNGHVHGYFSSLRRWTPIMENYEAGKG  251 (382)
T ss_dssp             -TT--TS--CCCTTTTTCSEEEEESSSTTCCCS-CEEEEEECHHHHHHHTCHHHHCCCSCSTTCHHHHHHHHHHHHTTCC
T ss_pred             -cc--cc--cccccccCeeEEeecccccCcCCC-chhhhhccHHHHhhhhhcccCCCcccchhhhhhhhhhhhccccccc
Confidence             21  11  333334556888766  9998766 778899998877665431                          01


Q ss_pred             CCCCCCCHHHHHHHHHHHHHHhhhcH---HHHHHHHHHHHHHHHHHHHHhCCCce--eeEEEEeeeEEEEeccCCCchhH
Q 017259          225 GSTFGGNPLASAVAIASLDVIRDEKL---AERSAHLGEELRQHLFKIQQQFPNYV--KEVRGRGLFNAVEFDKTALPVSA  299 (374)
Q Consensus       225 ~~~~~~~~~~~~aa~~al~~~~~~~~---~~~~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~g~~~~~~~~~~~~~~~~  299 (374)
                      ...+.++.....+..++++.+.+++.   .++.+++.+++++.+....... ...  ........++.+.++      +.
T Consensus       252 ~~~~Tp~~~~i~al~~aL~~~~~~g~~~~~~~~~~l~~~l~~~l~~~~~~~-~~~~~~~~~~s~~v~~~~~~------~~  324 (382)
T d2bkwa1         252 AYFATPPVQLINSLDVALKEILEEGLHKRWDLHREMSDWFKDSLVNGLQLT-SVSRYPSNMSAHGLTAVYVA------DP  324 (382)
T ss_dssp             CCSSCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHTTTCCE-ESSCSSSTTBCSSCEEEECS------CH
T ss_pred             ccccCCcHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHhhhccccc-ccccCchhccCCcEEEEcCC------CH
Confidence            22346777888889999998876543   3444455555655554322110 000  001112344455554      46


Q ss_pred             HHHHHHHHHCCeEeccCC-----CCEEEEe-cCCCCCHHHHHHHHHHHHHHHhccCCc
Q 017259          300 YDICLKMKERGILAKPTH-----DTIVRLT-PPLSISSNELQEGSKALHDVLELDLPK  351 (374)
Q Consensus       300 ~~~~~~l~~~Gi~v~~~~-----~~~lRi~-~~~~~~~e~i~~~~~~l~~~~~~~~~~  351 (374)
                      .++.+.|.++||.++.+.     .+.+||+ +++..++++++.++++|+.+.+ .+++
T Consensus       325 ~~~~~~L~~~gi~i~~G~~~~~~~~~~Ri~~~G~~~~~e~i~~l~~~l~~i~~-~L~~  381 (382)
T d2bkwa1         325 PDVIAFLKSHGVVIAGGIHKDIGPKYIRIGHMGVTACNKNLPYMKNCFDLIKL-ALQR  381 (382)
T ss_dssp             HHHHHHHHHTTEECBCCCCTTTGGGEEEECCCGGGTSSTTCTHHHHHHHHHHH-HTTC
T ss_pred             HHHHHHHHHCCeEEECCCChhhcCCEEEEeCCcCCCCHHHHHHHHHHHHHHHH-HHCc
Confidence            789999999999998752     4789998 6777778888888888876666 5543

>d1gc0a_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Pseudomonas putida [TaxId: 303]

Probab=99.78  E-value=1.2e-17  Score=151.42  Aligned_cols=222  Identities=15%  Similarity=0.130  Sum_probs=156.2

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-...|+++|+++.+.+..+.++||..|+..++..+     .++|     |+|++.+..|++.........
T Consensus        50 ~~~Y~R~~nPT~~~LE~~la~LEg~~~a~~~~SGmaAi~~~l~~l-----~~~G-----d~vl~~~~~Yg~t~~l~~~~~  119 (392)
T d1gc0a_          50 GHFYSRISNPTLNLLEARMASLEGGEAGLALASGMGAITSTLWTL-----LRPG-----DEVLLGNTLYGCTFAFLHHGI  119 (392)
T ss_dssp             -------CCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSCCSHHHHHHHHTG
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCcceeehhhHHHHHHHHHHhh-----ccCC-----Ceeecccccchhhhhhhhhhh
Confidence            344566778999999999999999999999999999999999888     6778     999999999987655544332


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..         ....+.+++..|++.++++++   ++|+++++|++.|++..+.+    +++|+++|+++|+++++|.++
T Consensus       120 ~~---------~Gi~~~~~d~~d~~~~~~ai~---~~t~lv~~Esp~NP~l~v~D----i~~i~~ia~~~g~~~vvDnT~  183 (392)
T d1gc0a_         120 GE---------FGVKLRHVDMADLQALEAAMT---PATRVIYFESPANPNMHMAD----IAGVAKIARKHGATVVVDNTY  183 (392)
T ss_dssp             GG---------GTCEEEEECTTCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHGGGTCEEEEECTT
T ss_pred             cc---------CCcccccCCccCHHHHHHhCC---CCCeEEEecccccceeeecc----hHHHHHHHHhcCCEEEEecCc
Confidence            21         113455666678999999887   68999999999999999999    999999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCC--CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPG--EHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +..      +....+....|++  |.+|-++| +-+-.|.++++++...+.+..  ........++..+......++-+.
T Consensus       184 atP------~~~~Pl~~GaDivihS~TKyi~Ghsd~~~G~v~~~~~~~~~~r~~~~~~~~G~~~~p~da~ll~rgl~TL~  257 (392)
T d1gc0a_         184 CTP------YLQRPLELGADLVVHSATKYLSGHGDITAGIVVGSQALVDRIRLQGLKDMTGAVLSPHDAALLMRGIKTLN  257 (392)
T ss_dssp             THH------HHCCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECHHHHHHHHHTHHHHHTCCCCCHHHHHHHHHHHTTHH
T ss_pred             cCc------cccChHHhCCCEEEEecceeecCCcccccccccchhHHHHHHHHHHHHHccCCcCChhhHHHHHhccccHH
Confidence            721      1222223445655  77899986 331456677887766554311  111223446666666666655432


Q ss_pred             hhcHHHHHHHHHHHHHHHHHH
Q 017259          247 DEKLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~  267 (374)
                      .  ..++..++...+.+.|+.
T Consensus       258 l--Rm~~~~~nA~~lA~~L~~  276 (392)
T d1gc0a_         258 L--RMDRHCANAQVLAEFLAR  276 (392)
T ss_dssp             H--HHHHHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHHHHHHHh
Confidence            2  355555666666666654

>d1y4ia1 c.67.1.3 (A:2-398) Methionine gamma-lyase, MGL {Citrobacter freundii [TaxId: 546]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Citrobacter freundii [TaxId: 546]

Probab=99.76  E-value=4.3e-17  Score=147.88  Aligned_cols=222  Identities=12%  Similarity=0.086  Sum_probs=158.8

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-...|+++|+++.|.+..+.++||..|+..++..+     .++|     |+|++....|.+.........
T Consensus        54 ~~~Y~R~~nPT~~~LE~~la~LEgg~~a~~~sSGmaAi~~~l~~l-----l~~G-----d~vi~~~~~Yg~t~~~~~~~l  123 (397)
T d1y4ia1          54 GYIYTRLGNPTTDALEKKLAVLERGEAGLATASGISAITTTLLTL-----CQQG-----DHIVSASAIYGCTHAFLSHSM  123 (397)
T ss_dssp             SSCCCTTSCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESSSCHHHHHHHHTHH
T ss_pred             CceeeCCCCHHHHHHHHHHHHHhCCccceeehHHHHHHHHHHhhc-----cCCC-----Ceeeeecccccccchhhhccc
Confidence            345666779999999999999999999999999999999999888     6778     999999999976544433221


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ..         +...+.+++..|.+.++++++   ++|++|++|++.||+..+.+    +++|+++|+++|+++++|.++
T Consensus       124 ~~---------~Gi~~~~vd~~d~~~~~~~i~---~~Tklv~~Esp~NP~l~v~D----i~~i~~iA~~~gi~~vvDnT~  187 (397)
T d1y4ia1         124 PK---------FGINVRFVDAGKPEEIRAAMR---PETKVVYIETPANPTLSLVD----IETVAGIAHQQGALLVVDNTF  187 (397)
T ss_dssp             HH---------TTCEEEEECTTSHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             CC---------CceEeeccCCCCHHHHHHhcC---CCCcEEEecCCcccceeecc----cHHHHHHhhcCCceEEecCcc
Confidence            11         123456666678999999887   68999999999999999998    999999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcC--CCCCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQ--PGEHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +..      +.........|++  |.+|-++| +=+-+|.++++++.....+  .......-..+++.+..++..++-+.
T Consensus       188 atP------~~~~Pl~~GaDivihS~TKyi~Ghsdvl~G~v~~~~~~~~~~r~~~~~~~~G~~l~p~~a~l~~rgl~TL~  261 (397)
T d1y4ia1         188 MSP------YCQQPLQLGADIVVHSVTKYINGHGDVIGGIIVGKQEFIDQARFVGLKDITGGCMSPFNAWLTLRGVKTLG  261 (397)
T ss_dssp             TCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTHHHHTTCCCCCHHHHHHHHHHHTTHH
T ss_pred             cCc------ccCcchhcCCCEEEEehhhhcCCCcceeeeccCCCHHHHHHHHHHHHHhCcCCcCCHHHHHHHHcCcCcHH
Confidence            632      1222233345655  77899986 3313455778877665432  11111223456777766666665432


Q ss_pred             hhcHHHHHHHHHHHHHHHHHH
Q 017259          247 DEKLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~  267 (374)
                      -  ..++..++...+.+.|+.
T Consensus       262 l--Rm~~~~~nA~~lA~~L~~  280 (397)
T d1y4ia1         262 I--RMERHCENALKIARFLEG  280 (397)
T ss_dssp             H--HHHHHHHHHHHHHHHHHT
T ss_pred             H--HHHHHHHHHHHHHHHHHh
Confidence            2  245555666666666654

>d1iuga_ c.67.1.3 (A:) Subgroup IV putative aspartate aminotransferase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Subgroup IV putative aspartate aminotransferase
species: Thermus thermophilus [TaxId: 274]

Probab=99.75  E-value=2.2e-17  Score=149.55  Aligned_cols=291  Identities=16%  Similarity=0.124  Sum_probs=188.1

Q ss_pred             CCcHHHHHHHHhcccCCC--eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           20 NDKFPVFAERLTSMFGYD--MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~--~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ...+++..+.|+++++.+  .++++.|||.+++.++..+     ..+|     +++++...++.|.......-.......
T Consensus        32 ~~i~~~~~~~l~~ll~~~~~~i~~~gsgT~a~e~~~~nl-----~~~g-----~~vlv~~~G~f~~~~~~~a~~~~~~~~  101 (348)
T d1iuga_          32 REVFLKARGLLREAFRTEGEVLILTGSGTLAMEALVKNL-----FAPG-----ERVLVPVYGKFSERFYEIALEAGLVVE  101 (348)
T ss_dssp             HHHHHHHHHHHHHHHTCSSEEEEEESCHHHHHHHHHHHH-----CCTT-----CEEEEEECSHHHHHHHHHHHHTTCEEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCEEEEeCchHHHHHHHHHhc-----cccc-----ccceeecchHHHHHHHHHHHhcCcccc
Confidence            455777888888877544  5789999999999999888     5667     888877776555332221111100000


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcC--CEEEEeccccCCc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYN--ILMIADEIQSGLA  175 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~--i~li~Dea~~~~~  175 (374)
                               ....++.+...+++ +.  ..+++.+++.+..+++|.+.+    +++|.++|++|+  .++++|.+++ ++
T Consensus       102 ---------~~~~~~g~~~~~~~-~~--~~~~~~v~~~h~eTstG~~~~----i~~i~~~~~~~~~~~l~~vDavss-~g  164 (348)
T d1iuga_         102 ---------RLDYPYGDTPRPED-VA--KEGYAGLLLVHSETSTGALAD----LPALARAFKEKNPEGLVGADMVTS-LL  164 (348)
T ss_dssp             ---------EEECCTTCCCCTTT-SC--CSSCSEEEEESEETTTTEECC----HHHHHHHHHHHCTTCEEEEECTTT-BT
T ss_pred             ---------cccccCCCcccccc-cc--ccCCCeeEEEecchhhhhhcc----HHHHHHHHHhhhccceeechhhhc-cc
Confidence                     11111111111111 11  246777888888888999999    999999999885  7889999887 21


Q ss_pred             ccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCC--------------CCCCCCCCCHHHHHHHH
Q 017259          176 RSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPG--------------EHGSTFGGNPLASAVAI  239 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~aa~  239 (374)
                        ..++..+.+  ..|++++|  |+++|.- ++|+++.+++..+++.+.              .....++++.....+..
T Consensus       165 --~~~i~~d~~--~iD~~~~~sqK~l~gpp-G~~~v~~s~~~le~~~~~~~~~dl~~~~~~~~~~~~~~Tp~v~~i~~l~  239 (348)
T d1iuga_         165 --VGEVALEAM--GVDAAASGSQKGLMCPP-GLGFVALSPRALERLKPRGYYLDLARELKAQKEGESAWTPAINLVLAVA  239 (348)
T ss_dssp             --TBCCCSGGG--TCSEEEEESSSTTCCCS-CEEEEEECHHHHHTCCCCSSTTCHHHHHHHHTTTCCSSCCCHHHHHHHH
T ss_pred             --ccccccccc--cCCEEEeccccceecCC-ceeeeeechHHHhhhcccccccchhhhhhhhccCcccccccchHHHHHH
Confidence              122333333  45776554  9997655 668899999888877643              12234567777888888


Q ss_pred             HHHHHHhhhcHHHHHHHHHHHHHHHHHHHHHhCCCceeeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC-
Q 017259          240 ASLDVIRDEKLAERSAHLGEELRQHLFKIQQQFPNYVKEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH-  317 (374)
Q Consensus       240 ~al~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~-  317 (374)
                      ++++.+..+ ..++. +..++....+..+.... ++.... ..+..+..+.+|+..   +..++.+.|.++|+.+.++. 
T Consensus       240 ~aL~~~~~~-~~~~~-~~~~~~~~~~~~~~~~~-gl~~~~~~~s~~v~~~~~P~g~---~~~~~~~~l~~~gi~i~~G~~  313 (348)
T d1iuga_         240 AVLEEVLPR-LEEHL-ALKAWQNALLYGVGEEG-GLRPVPKRFSPAVAAFYLPEGV---PYARVKEAFAQRGAVIAGGQG  313 (348)
T ss_dssp             HHHHHHGGG-HHHHH-HHHHHHHHHHHHHHHHT-TCEESCSSBCTTCEEEECCTTC---CHHHHHHHHHTTTEECEECCG
T ss_pred             HHHHHHHHH-HhHHH-HHHHHHHHHHhhhhhhh-hhccChhhcCCeEEEEECCCCC---CHHHHHHHHHHCCeEEEcCcc
Confidence            999877554 23332 22333333344433322 222111 123446777777654   78899999999999998764 


Q ss_pred             ---CCEEEEecCCCCCHHHHHHHHHHHHHHHhccC
Q 017259          318 ---DTIVRLTPPLSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       318 ---~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                         +..+||+..-..+.+|++.++++|+++++ ++
T Consensus       314 ~l~~~~~RIg~mG~~~~~d~~~~~~~l~~~l~-~~  347 (348)
T d1iuga_         314 PLKGKVFRLSLMGAYDRYEALGVAGMFREVLE-EI  347 (348)
T ss_dssp             GGTTTEEEECCCSSCCHHHHHHHHHHHHHHHH-HH
T ss_pred             ccCCCEEEEeCCCCCCHHHHHHHHHHHHHHHH-Hh
Confidence               56899985557889999999999999998 53

>d1ibja_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.75  E-value=7.5e-18  Score=152.55  Aligned_cols=220  Identities=11%  Similarity=0.077  Sum_probs=151.0

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.++++.+|-.+.|+++|+++.+.+.++.++||..|+. ++..+     .++|     |+|++....|.+..........
T Consensus        41 ~~Y~R~~nPt~~~le~~la~LE~~~~a~~fsSGMaAis-all~l-----l~~G-----d~vv~~~~~Yg~t~~l~~~~~~  109 (380)
T d1ibja_          41 YDYTRSGNPTRDALESLLAKLDKADRAFCFTSGMAALS-AVTHL-----IKNG-----EEIVAGDDVYGGSDRLLSQVVP  109 (380)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHH-HHHTT-----SCTT-----CEEEEESSCCHHHHHHHHHTSG
T ss_pred             ceeeCCCChHHHHHHHHHHHHcCCceEEehhhHHHHHH-HHHHh-----hCCC-----CEEEEEecccccccchhhhhhc
Confidence            44566778999999999999999999999999999985 54433     6778     9999999988554433332221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+.++...+.+.++++++   ++++++++|++.||+..+.+    +++|+++|+++|+++|+|++++
T Consensus       110 ~---------~gi~~~~~d~~~~~~~~~ai~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vVDnT~a  173 (380)
T d1ibja_         110 R---------SGVVVKRVNTTKLDEVAAAIG---PQTKLVWLESPTNPRQQISD----IRKISEMAHAQGALVLVDNSIM  173 (380)
T ss_dssp             G---------GTCEEEEECTTSHHHHHHHCC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHTTTCEEEEECTTT
T ss_pred             c---------ccccccccCcchHHHHHHHhc---cCccEEEecccccccccccc----HHHHHHHHHHcCCeEEeecccc
Confidence            1         113355566668888888886   68999999999999999999    9999999999999999999986


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ..      +.........|++  |.+|-++| +=+-+|.++.+ +++.+.+........-..+++.+......++-+.  
T Consensus       174 tP------~~~~Pl~~GaDiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~--  245 (380)
T d1ibja_         174 SP------VLSRPLELGADIVMHSATKFIAGHSDVMAGVLAVKGEKLAKEVYFLQNSEGSGLAPFDCWLCLRGIKTMA--  245 (380)
T ss_dssp             CT------TTCCGGGTTCSEEEEETTTTTTCSSCCCCEEEEECSHHHHHHHHHHHHHTTCBCCHHHHHHHHHHHTTHH--
T ss_pred             cc------ccccccccCCCEEEecccceeccccCccccccccchhhHHHHHHhhccccCCcCCHHHHHHHHhcchhhh--
Confidence            32      1222223345655  77899986 32134445544 5555555432222222346666666666655432  


Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q 017259          249 KLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~  267 (374)
                      -..++..++..++.+.|++
T Consensus       246 lRm~~~~~nA~~lA~~L~~  264 (380)
T d1ibja_         246 LRIEKQQENARKIAMYLSS  264 (380)
T ss_dssp             HHHHHHHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHHHHHh
Confidence            2245556666666666654

>d1qgna_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Common tobacco (Nicotiana tabacum) [TaxId: 4097]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Common tobacco (Nicotiana tabacum) [TaxId: 4097]

Probab=99.75  E-value=1.8e-17  Score=150.67  Aligned_cols=296  Identities=17%  Similarity=0.188  Sum_probs=188.8

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-...|+++|+++.|.+.++.++||..|+..++..+     .+.|     |+|++....|.+.........
T Consensus        58 ~~~Y~R~~nPt~~~LE~~la~LEgg~~a~~~sSGMaAi~~~l~~l-----~~~G-----d~iv~~~~~Yg~t~~l~~~~~  127 (398)
T d1qgna_          58 SFEYGRYGNPTTVVLEEKISALEGAESTLLMASGMCASTVMLLAL-----VPAG-----GHIVTTTDCYRKTRIFIETIL  127 (398)
T ss_dssp             CCCBGGGCCHHHHHHHHHHHHHHTCSEEEEESCHHHHHHHHHHHH-----SCSS-----CEEEEETTSCHHHHHHHHHTG
T ss_pred             CceecCCCChHHHHHHHHHHHHhCCceEEEecCcchHHHHHHhhc-----cccc-----ccccccccccchhhhhhcccc
Confidence            445566779999999999999999999999999999999999888     6677     999999999977554443332


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQ  171 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~  171 (374)
                      ...+         ..+.+++..+.+..++.+.+  ++++++++|++.||+-.+.+    +++|+++|+++|+++|+|.++
T Consensus       128 ~~~g---------i~~~~~~~~~~~~~~~~~~~--~~t~~v~~EspsNP~l~v~D----i~~ia~ia~~~g~~~vVDnT~  192 (398)
T d1qgna_         128 PKMG---------ITATVIDPADVGALELALNQ--KKVNLFFTESPTNPFLRCVD----IELVSKLCHEKGALVCIDGTF  192 (398)
T ss_dssp             GGGT---------CEEEEECSSCHHHHHHHHHH--SCEEEEEEESSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTT
T ss_pred             cccc---------cccccccccchhhhhhhhcc--ccceEEEccCccccccccch----HHHHHHHHhhcCCEEEeccee
Confidence            2111         22333333355555444432  68999999999999999998    999999999999999999998


Q ss_pred             cCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          172 SGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       172 ~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      +..      +....+....|++  |.+|-++| +-+-+|.+..++++...++.......-..+++.+..+...++-+.  
T Consensus       193 atP------~~~~Pl~~GaDiVihS~TKy~~Ghsdv~~G~v~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~TL~--  264 (398)
T d1qgna_         193 ATP------LNQKALALGADLVLHSATKFLGGHNDVLAGCISGPLKLVSEIRNLHHILGGALNPNAAYLIIRGMKTLH--  264 (398)
T ss_dssp             TCT------TTCCTTTTTCSEEEECTTTTTTCSSSCCCEEEEECHHHHHHHHHHHHHHCCCCCHHHHHHHHHHGGGHH--
T ss_pred             ecc------ccCCchhhCCCEEEEechhhcCcccceeehhhcchhhhhhhhhhhcccCCCcCCHHHHHHHHhcchHHH--
Confidence            622      2333344456766  77798886 321445577787777766543222222456666666655554332  


Q ss_pred             cHHHHHHHHHHHHHHHHHHHHH----hCCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHH--CCeEe
Q 017259          249 KLAERSAHLGEELRQHLFKIQQ----QFPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKE--RGILA  313 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~--~Gi~v  313 (374)
                      -..++..++...+.+.|++-..    .+|+...         ...+.|.++.|.+..+.  ..+.+|++.|.=  .+.-.
T Consensus       265 lRm~~~~~nA~~lA~~L~~hp~V~~V~yPgL~s~p~~~~~~~~~~g~g~~~sf~~~g~~--~~a~~f~~~L~l~~~a~Sl  342 (398)
T d1qgna_         265 LRVQQQNSTALRMAEILEAHPKVRHVYYPGLQSHPEHHIAKKQMTGFGGAVSFEVDGDL--LTTAKFVDALKIPYIAPSF  342 (398)
T ss_dssp             HHHHHHHHHHHHHHHHHHTCTTEEEEECTTSSSSTTHHHHHHHCSCCCSEEEEEESSCH--HHHHHHHHHCSSSEECSCC
T ss_pred             HHHHHHHHHHHHHHHHHHhCCCeeecCCCCCCCCcchhhhhhhcCCCCceeeeeecCCH--HHHHHHHHcCCcceeeeCC
Confidence            2245556666666666654211    1111110         01233667777775431  133455555431  12111


Q ss_pred             --------cc-----------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          314 --------KP-----------------THDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       314 --------~~-----------------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                              -|                 -.++.||++.++    |+.+.+++.|+++|+
T Consensus       343 Gg~~SLi~~p~~~th~~~~~~~~~~~Gi~~~liRlSvGl----Ed~eDLi~Dl~~AL~  396 (398)
T d1qgna_         343 GGCESIVDQPAIMSYWDLSQSDRAKYGIMDNLVRFSFGV----EDFDDLKADILQALD  396 (398)
T ss_dssp             CSSSCEEECHHHHHSTTSCHHHHHTTTCCSSEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred             CCCcceeeCcchhccccCCHHHHHhcCCCcCEEEEEecc----CCHHHHHHHHHHHHh
Confidence                    11                 025789999553    455556777777776

>d1cs1a_ c.67.1.3 (A:) Cystathionine gamma-synthase, CGS {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-synthase, CGS
species: Escherichia coli [TaxId: 562]

Probab=99.73  E-value=1.3e-16  Score=144.49  Aligned_cols=221  Identities=17%  Similarity=0.128  Sum_probs=153.3

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|-...|+++|+++.|.+.++.++||..|+..++..+     .++|     |+|++....|.+..........
T Consensus        42 ~~Y~R~~nPt~~~le~~la~LEgg~~a~~~sSGMaAi~~~l~~l-----~~~g-----d~vv~~~~~yg~t~~~~~~~~~  111 (384)
T d1cs1a_          42 HDYSRRGNPTRDVVQRALAELEGGAGAVLTNTGMSAIHLVTTVF-----LKPG-----DLLVAPHDCYGGSYRLFDSLAK  111 (384)
T ss_dssp             CSBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTCCHHHHHHHHHHHT
T ss_pred             CcccCCCCHHHHHHHHHHHHHhCCCceEEecChHHHHHHHHhhc-----cccc-----ceecccccccchhhhhhhhhhc
Confidence            34556778999999999999999999999999999999999888     6777     9999999998665444333322


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS  172 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~  172 (374)
                      .         ....+.++...|.+.+++++.   +++++|++|++.||+-.+.+    +++|+++|+++|+++|+|++++
T Consensus       112 ~---------~g~~~~~~d~~d~~~~~~~~~---~~t~~v~~EspsNP~l~v~D----i~~i~~ia~~~g~~~vVDNT~a  175 (384)
T d1cs1a_         112 R---------GCYRVLFVDQGDEQALRAALA---EKPKLVLVESPSNPLLRVVD----IAKICHLAREVGAVSVVDNTFL  175 (384)
T ss_dssp             T---------TSCEEEEECTTCHHHHHHHHH---TCCSEEEEECSCTTTCCCCC----HHHHHHHHHHTTCEEEEECTTT
T ss_pred             c---------cccccccccCCCHHHHHhhcc---ccccEEEEeccccccceecc----HHHHhhhhhhcCcEEEEecccc
Confidence            1         112344455568899998888   68999999999999999998    9999999999999999999985


Q ss_pred             CCcccccCcccccCCCCCcEE--EecccccC-Cccchhhhee-CHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhhh
Q 017259          173 GLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLA-DKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRDE  248 (374)
Q Consensus       173 ~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~~  248 (374)
                      ..      +.........|++  |.+|-++| |=+-+|.++. ++.+.+.+...........+++.+..+...++-+.- 
T Consensus       176 tP------~~~~Pl~~GaDiVvhS~TKyi~Ghsdv~~G~vv~~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgL~TL~l-  248 (384)
T d1cs1a_         176 SP------ALQNPLALGADLVLHSCTKYLNGHSDVVAGVVIAKDPDVVTELAWWANNIGVTGGAFDSYLLLRGLRTLVP-  248 (384)
T ss_dssp             CT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESSHHHHHHHHHHHHHHTCBCCHHHHHHHHHHHTTHHH-
T ss_pred             Cc------ccccccccCCCEEEEccccccccCCCcccccccCCchhhhhhhhhhhhhhhhccccccHHHHhhccchhHH-
Confidence            22      1222233345655  77899986 3313455555 445544443221222234566666666655553322 


Q ss_pred             cHHHHHHHHHHHHHHHHHH
Q 017259          249 KLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       249 ~~~~~~~~~~~~~~~~l~~  267 (374)
                       ..++..++...+.+.|+.
T Consensus       249 -Rm~~~~~nA~~lA~~L~~  266 (384)
T d1cs1a_         249 -RMELAQRNAQAIVKYLQT  266 (384)
T ss_dssp             -HHHHHHHHHHHHHHHHTT
T ss_pred             -HHHHHHHHHHHHHHhccc
Confidence             245555666666666644

>d1cl1a_ c.67.1.3 (A:) Cystathionine beta-lyase, CBL {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine beta-lyase, CBL
species: Escherichia coli [TaxId: 562]

Probab=99.71  E-value=1e-16  Score=145.71  Aligned_cols=221  Identities=8%  Similarity=-0.041  Sum_probs=151.3

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|-...|+++|+++.|.+.++.++||..|+..++..+     .++|     |+|++....|.+..........
T Consensus        50 ~~Y~R~~nPt~~~le~~la~LEg~~~a~~~~SGMaAi~~~l~~l-----~~~G-----d~iv~~~~~Yg~T~~l~~~~l~  119 (391)
T d1cl1a_          50 LFYGRRGTLTHFSLQQAMCELEGGAGCVLFPCGAAAVANSILAF-----IEQG-----DHVLMTNTAYEPSQDFCSKILS  119 (391)
T ss_dssp             CCCTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEETTSCHHHHHHHHHTGG
T ss_pred             eEeECCCChhHHHHHHHHHHHhCCccEEEeccccceeeehhhcc-----cCCC-----CeEEEecccccchhhhhhhccc
Confidence            45667789999999999999999999999999999999999888     6677     9999999988554433332221


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhc--CCEEEEecc
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKY--NILMIADEI  170 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~--~i~li~Dea  170 (374)
                      .         ....+.+++..|.++++++++   ++++++++|++.||+..+.+    +++++++|+++  |+++++|++
T Consensus       120 ~---------~Gi~~~~~d~~d~~~~~~~i~---~~t~~i~~EtpsNP~l~v~D----i~~i~~~a~~~~~g~~~vVDnT  183 (391)
T d1cl1a_         120 K---------LGVTTSWFDPLIGADIVKHLQ---PNTKIVFLESPGSITMEVHD----VPAIVAAVRSVVPDAIIMIDNT  183 (391)
T ss_dssp             G---------GTCEEEEECTTCGGGGGGTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHCTTCEEEEECT
T ss_pred             c---------cccccccccCccccccccccc---cccceeeecccCcccccccc----cHHHHHHHHhccCCcEEEEecc
Confidence            1         113344555557888877776   68999999999999999998    99999999774  999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHHHhh
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQPGEHGSTFGGNPLASAVAIASLDVIRD  247 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~~~~  247 (374)
                      ++..      +.........|++  |.+|.++| +=+-.|.++.++++.+.+........-..++..+..+...++-+. 
T Consensus       184 ~atP------~~~~Pl~~GaDivvhS~TKy~~GhsdvlgG~vv~~~~~~~~~~~~~~~~G~~~~p~~a~ll~rgl~TL~-  256 (391)
T d1cl1a_         184 WAAG------VLFKALDFGIDVSIQAATKYLVGHSDAMIGTAVCNARCWEQLRENAYLMGQMVDADTAYITSRGLRTLG-  256 (391)
T ss_dssp             TTTT------TSSCGGGGTCSEEEEETTTTTTCSSSCCCEEEEECTTTHHHHHHHHHHTTCCCCHHHHHHHHHHHTTHH-
T ss_pred             ccch------hhhcccccccceEEeecchhccccccccccceeccccccccchhhhhcccccCCchhhhhhhccchhHH-
Confidence            8632      1222233345655  77799986 321345566676655554432111222345666555555554332 


Q ss_pred             hcHHHHHHHHHHHHHHHHHH
Q 017259          248 EKLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       248 ~~~~~~~~~~~~~~~~~l~~  267 (374)
                       -..++..++...+.+.|++
T Consensus       257 -lR~~~~~~nA~~vA~~L~~  275 (391)
T d1cl1a_         257 -VRLRQHHESSLKVAEWLAE  275 (391)
T ss_dssp             -HHHHHHHHHHHHHHHHHHT
T ss_pred             -HHHHHHHHHHHHHHHHHHh
Confidence             1245555566666666644

>d1e5ea_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL1 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL1 [TaxId: 5722]

Probab=99.69  E-value=3.1e-15  Score=136.03  Aligned_cols=222  Identities=10%  Similarity=0.023  Sum_probs=155.8

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-...|++.|+++.|.+.++.++||..|+..++..+     .++|     |+|++.+..|.+.........
T Consensus        50 ~~~YsR~~nPT~~~le~~la~LEg~~~a~~~sSGmaAi~~~~l~l-----~~~g-----d~vv~~~~~yg~t~~~~~~~~  119 (394)
T d1e5ea_          50 GYIYTRLGNPTVSNLEGKIAFLEKTEACVATSSGMGAIAATVLTI-----LKAG-----DHLISDECLYGCTHALFEHAL  119 (394)
T ss_dssp             SCCBTTTCCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHH
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCcceeeeccchHHHHHHHHhh-----cccc-----cccccccceeehhhHhHHHHh
Confidence            355666779999999999999999999999999999999998887     6777     999999988855433332221


Q ss_pred             CCccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHh-cCCEEEEecc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSK-YNILMIADEI  170 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~-~~i~li~Dea  170 (374)
                      .         .....+.+++..|.++++++++   ++++++++|++.||+..+.+    ++++.+++++ +|+++|+|.+
T Consensus       120 ~---------~~gi~~~~~d~~d~~~~~~~i~---~~t~lv~~Etp~NP~l~v~D----i~~~~~~~~~~~g~~vvvDnT  183 (394)
T d1e5ea_         120 T---------KFGIQVDFINTAIPGEVKKHMK---PNTKIVYFETPANPTLKIID----MERVCKDAHSQEGVLVIADNT  183 (394)
T ss_dssp             H---------HTTCEEEEECTTSTTHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHTSTTCEEEEECT
T ss_pred             h---------ccceeeeccCCCCHHHHHHhhc---ccccEEEEeccCCcceeeeh----hhhhhhccccccCeEEEecCc
Confidence            1         1224466666678899999887   68999999999999999998    9999887765 7899999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCC--CCCCCCCCCCHHHHHHHHHHHHHH
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIASLDVI  245 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aa~~al~~~  245 (374)
                      ++..      ..........|++  |.+|-++| +-+-.|.++.+++.....+.  ......-..+++.+......++-+
T Consensus       184 ~atP------~~~~Pl~~GaDiVvhS~TKy~~GhsDv~~G~v~~~~~~~~~~~~~~~~~~~G~~lsp~~a~ll~rgl~TL  257 (394)
T d1e5ea_         184 FCSP------MITNPVDFGVDVVVHSATKYINGHTDVVAGLICGKADLLQQIRMVGIKDITGSVISPHDAWLITRGLSTL  257 (394)
T ss_dssp             TTCT------TTCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHTTH
T ss_pred             ccCc------ccCCchhcCCCEEEechhhhcCCCcccccccccchhhHHHHHHHHHHHHhhCCCCChHHHHHHHhhchhH
Confidence            8632      1222333445655  77899986 44245557777776554332  111222344667766666666543


Q ss_pred             hhhcHHHHHHHHHHHHHHHHHH
Q 017259          246 RDEKLAERSAHLGEELRQHLFK  267 (374)
Q Consensus       246 ~~~~~~~~~~~~~~~~~~~l~~  267 (374)
                      .-  ..++..++...+.+.|++
T Consensus       258 ~l--Rm~r~~~nA~~lA~~L~~  277 (394)
T d1e5ea_         258 NI--RMKAESENAMKVAEYLKS  277 (394)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHT
T ss_pred             HH--HHHHHHHHHHHHHHHHhh
Confidence            22  355666666667666654

>d1pffa_ c.67.1.3 (A:) Methionine gamma-lyase, MGL {Trichomonas vaginalis, MGL2 [TaxId: 5722]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Methionine gamma-lyase, MGL
species: Trichomonas vaginalis, MGL2 [TaxId: 5722]

Probab=99.68  E-value=5.1e-16  Score=138.30  Aligned_cols=281  Identities=12%  Similarity=0.118  Sum_probs=180.3

Q ss_pred             HHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCCCC
Q 017259           25 VFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGPLL  104 (374)
Q Consensus        25 ~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~~~  104 (374)
                      .|+++|+++.|.+.++.++||..|+..++..+     .++|     |+|++....|.|..........+         ..
T Consensus         2 aLE~~la~Leg~~~a~~~sSGMaAi~~~l~~l-----l~~G-----d~iv~~~~~Yg~t~~~~~~~l~~---------~g   62 (331)
T d1pffa_           2 ALEGKIAKLEHAEACAATASGMGAIAASVWTF-----LKAG-----DHLISDDCLYGCTHALFEHQLRK---------FG   62 (331)
T ss_dssp             HHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEEESCCCHHHHHHHHTHHHH---------TT
T ss_pred             HHHHHHHHHhCCCeEEEECCHHHHHHHHHHHH-----hCCC-----CEEEEeCCCchHHHHHHHHHHHh---------cC
Confidence            48899999999999999999999999999888     6778     99999999997654443322211         12


Q ss_pred             CCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH-HhcCCEEEEeccccCCcccccCccc
Q 017259          105 PGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC-SKYNILMIADEIQSGLARSGRMLAS  183 (374)
Q Consensus       105 ~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~-~~~~i~li~Dea~~~~~~~g~~~~~  183 (374)
                      .++.+++..|.+.++++++   ++++.++++++.||+..+.+    ++++.+++ +++|+++|+|.+++..      +..
T Consensus        63 i~~~~~d~~d~~~~~~~i~---~~t~~i~~Es~~np~~~v~d----~~~~~~~~a~~~~~~~vVDnT~atp------~~~  129 (331)
T d1pffa_          63 VEVDFIDMAVPGNIEKHLK---PNTRIVYFETPANPTLKVID----IEDAVKQARKQKDILVIVDNTFASP------ILT  129 (331)
T ss_dssp             CEEEEECTTSTTHHHHTCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHTTSSSCEEEEECTTTHH------HHC
T ss_pred             eEEEEecccchhhHhhhcc---cccceeeeeccccccccccc----chhhhhhhhcccCceEEeecccccc------ccc
Confidence            3456666668888888877   78999999999999998998    99999985 6789999999998632      122


Q ss_pred             ccCCCCCcEE--EecccccC-CccchhhheeCHHHHhhcCC--CCCCCCCCCCHHHHHHHHHHHHHHhhhcHHHHHHHHH
Q 017259          184 DWEEVRPDMV--ILGKALGG-GVIPVSAVLADKEVMLCIQP--GEHGSTFGGNPLASAVAIASLDVIRDEKLAERSAHLG  258 (374)
Q Consensus       184 ~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~aa~~al~~~~~~~~~~~~~~~~  258 (374)
                      .......|++  |.+|-++| +-.-+|.++.+++.......  ......-..++..+......++-+..  ..++..++.
T Consensus       130 ~pl~~GaDiVv~S~TKy~~Gh~d~~~G~v~~~~~~~~~~~~~~~~~~~G~~l~p~~a~ll~rgl~Tl~~--Rm~~~~~nA  207 (331)
T d1pffa_         130 NPLDLGVDIVVHSATKYINGHTDVVAGLVCSRADIIAKVKSQGIKDITGAIISPHDAWLITRGTLTLDM--RVKRAAENA  207 (331)
T ss_dssp             CGGGGTCSEEEEETTTTTSSSSSCCCEEEEECHHHHHHHHHTCCCCCCCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHH
T ss_pred             cccccCCCEEEecchhhcCCCCccccccccccccchhhhhhhhhhhccCCCCCHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence            2223345655  77899986 43144567777655444321  11222234577777777766665432  356666677


Q ss_pred             HHHHHHHHHHHHh----CCCcee---------eEEEEeeeEEEEeccCCCchhHHHHHHHHHHC--Ce--------Eecc
Q 017259          259 EELRQHLFKIQQQ----FPNYVK---------EVRGRGLFNAVEFDKTALPVSAYDICLKMKER--GI--------LAKP  315 (374)
Q Consensus       259 ~~~~~~l~~~~~~----~~~~~~---------~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~--Gi--------~v~~  315 (374)
                      ..+.+.|++-...    +|+...         ...+.|.++.|.+...   ....+|++.|.--  +.        ++-|
T Consensus       208 ~~lA~~L~~hp~V~~V~yPgl~s~p~~~~~~~~~~~~g~l~sf~l~~~---~~~~~f~d~l~lf~~~~SlG~~~SLi~~p  284 (331)
T d1pffa_         208 QKVAEFLHEHKAVKKVYYPGLPDHPGHEIAKKQMKMFGSMIAFDVDGL---EKAKKVLDNCHVVSLAVSLGGPESLIQHP  284 (331)
T ss_dssp             HHHHHHHHHCTTCCCEECTTSTTSTTHHHHHHHCSSCCSEEEEECSSH---HHHHHHHHTCSSSEECSSCCSSSCEEECH
T ss_pred             HHHHHhhhhCCcEEeeccccccCccHHHHHhhcccccCcccceeeccH---HHHHHHHHhCCcceecccCCCCceeEeCc
Confidence            7777777653211    111100         0123477778877532   1344444443211  11        1111


Q ss_pred             -----------------CCCCEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          316 -----------------THDTIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 -----------------~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                                       -.++.+|++.++    |+.+.+++.|+++++
T Consensus       285 ~~~~h~~~~~e~~~~~Gi~~~liRlsvGl----E~~~DLi~Dl~~AL~  328 (331)
T d1pffa_         285 ASMTHAGVPKEEREAAGLTDNLIRLSVGC----ENVQDIIDDLKQALD  328 (331)
T ss_dssp             HHHTSTTSCHHHHHHTTCCTTEEEEECCS----SCHHHHHHHHHHHHH
T ss_pred             cccccccCCHHHHHhcCCCcCeEEEEeee----CCHHHHHHHHHHHHH
Confidence                             025789999554    455556677777766

>d1pmma_ c.67.1.6 (A:) Glutamate decarboxylase beta, GadB {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: Glutamate decarboxylase beta, GadB
species: Escherichia coli [TaxId: 562]

Probab=99.65  E-value=2.5e-15  Score=140.22  Aligned_cols=304  Identities=10%  Similarity=-0.019  Sum_probs=182.9

Q ss_pred             HHHHHHHhcccCCC-------eEEecCChHHHHHHHHHHHHHcccc---cccCCCCccEEEEeccCCCCcccccccccCC
Q 017259           24 PVFAERLTSMFGYD-------MVLPMNTGAEGVETALKLARKWGYV---KKKFSIDEAIIVSCCGCFHGRTLAAISMSCD   93 (374)
Q Consensus        24 ~~l~~~l~~~~~~~-------~~~~~~~gs~a~~~al~~~~~~~~~---~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~   93 (374)
                      .++..+|+++++..       .-.+|+|||+|+..++.+++..+..   ..| ......+++.. +.|.....+..+.+-
T Consensus        96 ~~~v~~la~L~~~p~~~~~~~~G~~t~GgSeA~~~a~~aar~~~~~~~~~~g-~~~~~~~~~~~-~~H~s~~Kaa~~~gi  173 (450)
T d1pmma_          96 LRCVNMVADLWHAPAPKNGQAVGTNTIGSSEACMLGGMAMKWRWRKRMEAAG-KPTDKPNLVCG-PVQICWHKFARYWDV  173 (450)
T ss_dssp             HHHHHHHHHHTTCCCCTTSCCSEEEESSHHHHHHHHHHHHHHHHHHHHHHHT-CCCSCCEEEES-SCCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHhCCCccccCCCcCeeeCchHHHHHHHHHHHHHHHHHHhhhcC-CCCCCceEEec-ccHHHHHHHHHHcCC
Confidence            34556777777642       2589999999999999988754311   122 12223455544 446655555444432


Q ss_pred             ccccccCCCCCC-CceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHH------HhcCCEEE
Q 017259           94 NEAIRGFGPLLP-GHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLC------SKYNILMI  166 (374)
Q Consensus        94 ~~~~~~~~~~~~-~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~------~~~~i~li  166 (374)
                      .....   +... +..    -|+++|+++++   ++|+++++....+.+|.+.|    +++|.++|      +++|++++
T Consensus       174 ~~~~v---~~~~~~~~----~d~~~L~~~i~---~~t~~Vv~t~gtt~tG~~dp----v~~i~~i~~~~~~a~~~~i~lH  239 (450)
T d1pmma_         174 ELREI---PMRPGQLF----MDPKRMIEACD---ENTIGVVPTFGVTYTGNYEF----PQPLHDALDKFQADTGIDIDMH  239 (450)
T ss_dssp             EEEEC---CCBTTBCS----CCHHHHHHHCC---TTEEEEECBBSCTTTCBBCC----HHHHHHHHHHHHHHHCCCCCEE
T ss_pred             CceEe---eecCCCCc----CcHHHHHHHhh---hCceEEEeeeeeccCCCccc----cchhhHHHHHHHHHhccCcEEE
Confidence            22111   1111 011    17999999887   57888888888888999887    77777664      67899999


Q ss_pred             EeccccCCcc----cccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHHH-Hhh-cCC------C---CCCCCC
Q 017259          167 ADEIQSGLAR----SGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKEV-MLC-IQP------G---EHGSTF  228 (374)
Q Consensus       167 ~Dea~~~~~~----~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~~-~~~-~~~------~---~~~~~~  228 (374)
                      +|.+++|+..    ....+.   .++ ..|.+++|  |.+.+.. ++|+++.+++- ... +..      .   .....+
T Consensus       240 VDAA~gG~~~p~~~~~~~~~---~~~~~aDSi~~s~HK~~~~p~-g~g~l~~r~~~~~~~~~~~~~~yl~~~~~~~~~~~  315 (450)
T d1pmma_         240 IDAASGGFLAPFVAPDIVWD---FRLPRVKSISASGHKFGLAPL-GCGWVIWRDEEALPQELVFNVDYLGGQIGTFAINF  315 (450)
T ss_dssp             EECTTGGGTHHHHCTTCCCS---TTSTTEEEEEEETTTTTCCCS-SCEEEEESSGGGSCGGGCEEEEETTEEEEECCSCC
T ss_pred             eehhhccceeeeechhhhhh---hcccceeEeecChhhccCCCC-CeeEEEecChhhhhhhcccccCcCCCCcCCCcccC
Confidence            9999986421    111111   111 34666666  8777777 78888876542 111 110      0   011122


Q ss_pred             CCCHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEE----EEeeeEEEEeccCC-CchhHH
Q 017259          229 GGNPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVR----GRGLFNAVEFDKTA-LPVSAY  300 (374)
Q Consensus       229 ~~~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~----~~g~~~~~~~~~~~-~~~~~~  300 (374)
                      +-+.....+....++.+..+   ++.++..++.+++.++|++.    +.+.....    ..-..+.|.+.+.. .+.+..
T Consensus       316 sr~~~~~~~~~~~l~~~G~~G~~~~~~~~~~la~~l~~~L~~~----~~~el~~~~~p~~~l~~V~Fr~~~~~~~~~~~~  391 (450)
T d1pmma_         316 SRPAGQVIAQYYEFLRLGREGYTKVQNASYQVAAYLADEIAKL----GPYEFICTGRPDEGIPAVCFKLKDGEDPGYTLY  391 (450)
T ss_dssp             SCBSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT----SCEEEEEECCTTTBSSEEEEEECTTCCCSSCHH
T ss_pred             ccchHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhC----CCeEEEeCCCCCCceEEEEEecCCcccCCCCHH
Confidence            22334444456666665554   44455555666666666554    22221121    11234666664322 133577


Q ss_pred             HHHHHHHHCCeEecc----C---CCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCCcC
Q 017259          301 DICLKMKERGILAKP----T---HDTIVRLTPPLSISSNELQEGSKALHDVLELDLPKM  352 (374)
Q Consensus       301 ~~~~~l~~~Gi~v~~----~---~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~~~  352 (374)
                      ++.+.|.++|..+..    .   +...+|+.+....|.++++++++.|+++++ .+.++
T Consensus       392 ~l~~~L~~~Gw~v~~~~~p~~~~~~~~lRvvv~~~~t~e~~d~lv~dl~~~v~-~l~~~  449 (450)
T d1pmma_         392 DLSERLRLRGWQVPAFTLGGEATDIVVMRIMCRRGFEMDFAELLLEDYKASLK-YLSDH  449 (450)
T ss_dssp             HHHHHHHTTTCBCCEEECCTTCTTCEEEEEECCTTCCHHHHHHHHHHHHHHHH-HHHHC
T ss_pred             HHHHHHHHcCCeeeccCcCCCcCCcEEEEEEccCCCCHHHHHHHHHHHHHHHH-HHHhC
Confidence            899999999977632    1   246799999888999999999999999998 77543

>d1js3a_ c.67.1.6 (A:) DOPA decarboxylase {Pig (Sus scrofa) [TaxId: 9823]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Pyridoxal-dependent decarboxylase
domain: DOPA decarboxylase
species: Pig (Sus scrofa) [TaxId: 9823]

Probab=99.64  E-value=2.4e-14  Score=134.30  Aligned_cols=305  Identities=12%  Similarity=0.047  Sum_probs=177.4

Q ss_pred             HHHHHhcccCCC-----------eEEecCChHHHHHHHHHHHHHccccc-----ccCCCC---ccEEEEeccCCCCcccc
Q 017259           26 FAERLTSMFGYD-----------MVLPMNTGAEGVETALKLARKWGYVK-----KKFSID---EAIIVSCCGCFHGRTLA   86 (374)
Q Consensus        26 l~~~l~~~~~~~-----------~~~~~~~gs~a~~~al~~~~~~~~~~-----~G~~~~---~~~vi~~~~~yhg~~~~   86 (374)
                      +.++|++.+|.+           .-++++|||+|+..++.++|.....+     .|...+   .+-+++.+..-|.....
T Consensus       118 v~~wl~~l~g~p~~~~~~~~~~~~G~~~~Ggs~anl~al~~AR~~~~~~~~~~~~g~~~~~~~~~~vv~~s~~~H~Si~k  197 (476)
T d1js3a_         118 MMDWLGKMLQLPEAFLAGEAGEGGGVIQGSASEATLVALLAARTKVVRRLQAASPGLTQGAVLEKLVAYASDQAHSSVER  197 (476)
T ss_dssp             HHHHHHHHTTCCGGGCCTTTCSCEEEEESCHHHHHHHHHHHHHHHHHHHHHHHSTTCCHHHHHHHEEEEEETTCCHHHHH
T ss_pred             HHHHHHHHhCCCcccccCCCCCCCceECCcHHHHHHHHHHHHHHHHHHhhcccccCcccccccCceEEEecccccHHHHH
Confidence            556666666663           35899999999999999987542111     110000   12233333333555555


Q ss_pred             cccccCCccccccCCCCCCCceeccCCCHHHHHHHHHh---cCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCC
Q 017259           87 AISMSCDNEAIRGFGPLLPGHLKVDFGDITALEKIFKE---SGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNI  163 (374)
Q Consensus        87 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~---~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i  163 (374)
                      +..+.+......   +...+...    |+++|+++|++   .+..+.+|+.+.....+|.+-|    +++|.++|++||+
T Consensus       198 a~~~lGl~~~~v---~~d~~~~m----d~~~L~~~i~~~~~~g~~p~~VvataGtt~~G~iDp----l~~I~~i~~~~~~  266 (476)
T d1js3a_         198 AGLIGGVKLKAI---PSDGKFAM----RASALQEALERDKAAGLIPFFVVATLGTTSCCSFDN----LLEVGPICHEEDI  266 (476)
T ss_dssp             HHHHHTCEEEEE---CCCTTSCC----CHHHHHHHHHHHHHTTCEEEEEEEEBSCTTTCCBCC----HHHHHHHHHHTTC
T ss_pred             HHHhcCceEEEe---ccCCCCCc----CHHHHHHHHHHHHhcCCCcEEEeecCCCccceeecc----HHHHHHHHHhcCc
Confidence            544444322111   11111111    89999999985   3344667777777788899999    9999999999999


Q ss_pred             EEEEeccccCCcccccCcccccCCC-CCcEEEec--ccccCCccchhhheeCHH--HHhhcCCCC----------C----
Q 017259          164 LMIADEIQSGLARSGRMLASDWEEV-RPDMVILG--KALGGGVIPVSAVLADKE--VMLCIQPGE----------H----  224 (374)
Q Consensus       164 ~li~Dea~~~~~~~g~~~~~~~~~~-~~d~~s~s--K~~~~G~~~~G~~~~~~~--~~~~~~~~~----------~----  224 (374)
                      ++++|.+|+|+............++ ..|.++++  |.+...+ ..|.++.++.  +...+....          .    
T Consensus       267 wlHVDAA~Gg~~~~~~~~~~~~~gi~~aDSit~d~HK~l~~P~-~~g~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~  345 (476)
T d1js3a_         267 WLHVDAAYAGSAFICPEFRHLLNGVEFADSFNFNPHKWLLVNF-DCSAMWVKRRTDLTGAFKLDPVYLKHSHQGSGLITD  345 (476)
T ss_dssp             EEEEECTTGGGGGGSTTTGGGGTTGGGCSEEEECHHHHSSCCS-SCEEEEESCHHHHHGGGC------------CCSCCC
T ss_pred             EEEEecccchhhhhhcchhhhhcCCcccceeeecCccccccCC-cceeecccchHHHHHHHhcChhhhcccccccccccc
Confidence            9999999987532222212122233 35777765  8888766 6777777642  222222100          0    


Q ss_pred             --CCCC-CCCHHHHHHHHHHHHHHhhhcHH---HHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchh
Q 017259          225 --GSTF-GGNPLASAVAIASLDVIRDEKLA---ERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVS  298 (374)
Q Consensus       225 --~~~~-~~~~~~~~aa~~al~~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~  298 (374)
                        ..+. ..-.......+.+++.+..+++.   ++..+..+++.+.+++.    |.+....++.-+++.|.+....  ..
T Consensus       346 ~~~~~~~~sr~~~al~lw~~l~~~G~~g~~~~i~~~~~lA~~l~~~l~~~----~~fel~~~p~l~iV~Fr~~~~d--~~  419 (476)
T d1js3a_         346 YRHWQLPLGRRFRSLKMWFVFRMYGVKGLQAYIRKHVQLSHEFEAFVLQD----PRFEVCAEVTLGLVCFRLKGSD--GL  419 (476)
T ss_dssp             GGGSSSCSCCCCTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----TTEEECSCCCSSEEEEEESSCH--HH
T ss_pred             ccccccccchhhHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHhcC----CCeEEECCCceEEEEEEccCCh--HH
Confidence              0011 11112233445566666555444   44444555555555443    3332223444556666664321  12


Q ss_pred             HHHHHHHHHHCC-eEeccC---CCCEEEEecC-CCCCHHHHHHHHHHHHHHHhccC
Q 017259          299 AYDICLKMKERG-ILAKPT---HDTIVRLTPP-LSISSNELQEGSKALHDVLELDL  349 (374)
Q Consensus       299 ~~~~~~~l~~~G-i~v~~~---~~~~lRi~~~-~~~~~e~i~~~~~~l~~~~~~~~  349 (374)
                      ..++.+.+.+.| +++.+.   +..++|+++. ...+++|++.+++.|+++.+ ++
T Consensus       420 n~~l~~~l~~~G~~~~s~t~~~g~~~lR~~i~n~~Tt~~did~~~~~i~~~a~-~l  474 (476)
T d1js3a_         420 NEALLERINSARKIHLVPCRLRGQFVLRFAICSRKVESGHVRLAWEHIRGLAA-EL  474 (476)
T ss_dssp             HHHHHHHHHHHTSCBCEEEEETTEEEEEEECCCTTCCHHHHHHHHHHHHHHHH-HH
T ss_pred             HHHHHHHHHhcCCEEEeeeeECCEEEEEEEeCCCCCCHHHHHHHHHHHHHHHH-HH
Confidence            457888888887 445442   3458999865 55688999999999999887 53

>d2ctza1 c.67.1.3 (A:1-421) O-acetyl-L-homoserine sulfhydrylase {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: O-acetyl-L-homoserine sulfhydrylase
species: Thermus thermophilus [TaxId: 274]

Probab=99.63  E-value=5.4e-15  Score=134.94  Aligned_cols=170  Identities=16%  Similarity=0.085  Sum_probs=123.5

Q ss_pred             cccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCccccccccc
Q 017259           12 TLSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMS   91 (374)
Q Consensus        12 ~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~   91 (374)
                      .+.+++..+|-.+.|+++|+++.+.+.++.++||..|+..++..+     .+.|     |+|++....|+|.........
T Consensus        49 ~~~YsR~~nPT~~~LE~~la~LE~~~~a~~~~SGmaAi~~~~~~l-----~~~g-----d~il~~~~~Yg~t~~l~~~~~  118 (421)
T d2ctza1          49 GNIYSRIMNPTVDVLEKRLAALEGGKAALATASGHAAQFLALTTL-----AQAG-----DNIVSTPNLYGGTFNQFKVTL  118 (421)
T ss_dssp             GGSCBTTBCHHHHHHHHHHHHHHTCSEEEEESSHHHHHHHHHHHH-----CCTT-----CEEEECSCCCHHHHHHHHTHH
T ss_pred             CceecCCCCHHHHHHHHHHHHHhCCCeEEEecChHHHHHHHHHhh-----cccc-----cceeecCCcCCchhHHHHHHH
Confidence            355667789999999999999999999999999999999999888     6777     999999999977654444332


Q ss_pred             CCccccccCCCCCCCceeccCCC-HHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecc
Q 017259           92 CDNEAIRGFGPLLPGHLKVDFGD-ITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEI  170 (374)
Q Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~d-~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea  170 (374)
                      ...+         ..+.++...+ .+..++.++   ++|++|++|++.||+..+.+    +++|+++|+++|+++|+|++
T Consensus       119 ~~~g---------i~~~~~d~~~~~~~~~~~~~---~~t~li~~EtpsNP~l~v~D----i~~i~~iA~~~g~~~vvDnT  182 (421)
T d2ctza1         119 KRLG---------IEVRFTSREERPEEFLALTD---EKTRAWWVESIGNPALNIPD----LEALAQAAREKGVALIVDNT  182 (421)
T ss_dssp             HHTT---------CEEEECCTTCCHHHHHHHCC---TTEEEEEEESSCTTTCCCCC----HHHHHHHHHHHTCEEEEECG
T ss_pred             hhcc---------ccceecccccCcchhccccC---CCceEEEEcCCCcceeEecc----hHHHHHHHHhcCCceEeccc
Confidence            1111         2233333233 344444444   68999999999999999998    99999999999999999999


Q ss_pred             ccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC
Q 017259          171 QSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD  212 (374)
Q Consensus       171 ~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~  212 (374)
                      ++.     .++.........|++  |.+|-++| +=+=+|.++.+
T Consensus       183 ~a~-----tP~~~~Pl~~GaDiVvhS~TKyl~GHsD~l~G~vv~~  222 (421)
T d2ctza1         183 FGM-----GGYLLRPLAWGAALVTHSLTKWVGGHGAVIAGAIVDG  222 (421)
T ss_dssp             GGG-----GGTSCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEEC
T ss_pred             ccc-----cceeccccccCCcEEEEechhhccCCCCeEEEEEEcC
Confidence            851     111222333445655  77899986 33133445544

>d1n8pa_ c.67.1.3 (A:) Cystathionine gamma-lyase (CYS3) {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Cystathionine synthase-like
domain: Cystathionine gamma-lyase (CYS3)
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.61  E-value=1.2e-14  Score=131.85  Aligned_cols=218  Identities=12%  Similarity=0.098  Sum_probs=147.1

Q ss_pred             ccCcCCCCCcHHHHHHHHhcccCCCeEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC
Q 017259           13 LSSRAFYNDKFPVFAERLTSMFGYDMVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC   92 (374)
Q Consensus        13 ~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~   92 (374)
                      +.+++..+|-.+.|+++|+++.+.+.++.++||..|+..++ .+     .++|     |+|++....|.+..........
T Consensus        47 y~YsR~gnPT~~~lE~~la~LE~~~~a~~~sSGmaAi~~~l-~~-----l~~g-----d~iv~~~~~yg~t~~~~~~~l~  115 (393)
T d1n8pa_          47 YEYSRSQNPNRENLERAVAALENAQYGLAFSSGSATTATIL-QS-----LPQG-----SHAVSIGDVYGGTHRYFTKVAN  115 (393)
T ss_dssp             CCBTTTCCHHHHHHHHHHHHHTTCSEEEEESCHHHHHHHHH-HT-----SCSS-----CEEEEESSCCHHHHHHHHHTST
T ss_pred             eeeeCCCChHHHHHHHHHHHHhCCceEEEecCchhHHHhhh-hc-----ccCC-----Ceeeeeeeecccchhhhhhhhh
Confidence            45566778999999999999999999999999988875443 33     4567     9999999999765544443322


Q ss_pred             CccccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHH----hcCCEEEEe
Q 017259           93 DNEAIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCS----KYNILMIAD  168 (374)
Q Consensus        93 ~~~~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~----~~~i~li~D  168 (374)
                      .         ....+.++. .+.++++++++   ++++++++|++.||+..+.+    +++|+++|+    ++|+++|+|
T Consensus       116 ~---------~gi~~~~~~-~~~~~~~~~i~---~~t~lv~~EspsNP~l~v~D----i~~ia~~a~~~~~~~g~~lvVD  178 (393)
T d1n8pa_         116 A---------HGVETSFTN-DLLNDLPQLIK---ENTKLVWIETPTNPTLKVTD----IQKVADLIKKHAAGQDVILVVD  178 (393)
T ss_dssp             T---------TCSCCEEES-SHHHHHHHHSC---SSEEEEEECSSCTTTCCCCC----HHHHHHHHHHHTTTTTCEEEEE
T ss_pred             c---------ccceeEEee-cchHHHHHHhh---hhcceeEecCcchhhhhccc----hhhhhhhhhhhcccCCceEEEe
Confidence            1         112233433 34677888776   78999999999999999998    999999999    789999999


Q ss_pred             ccccCCcccccCcccccCCCCCcEE--EecccccC-CccchhhheeC-HHHHhhcCCCCCCCCCCCCHHHHHHHHHHHHH
Q 017259          169 EIQSGLARSGRMLASDWEEVRPDMV--ILGKALGG-GVIPVSAVLAD-KEVMLCIQPGEHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       169 ea~~~~~~~g~~~~~~~~~~~~d~~--s~sK~~~~-G~~~~G~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~aa~~al~~  244 (374)
                      .+++..      +.........|++  |.+|-++| +=+-+|.++.+ +++.+.++.......-..+++.+..+...++-
T Consensus       179 nT~atP------~~~~Pl~~GADiVvhS~TKyi~GhsDv~~G~v~~~~~~~~~~l~~~~~~~G~~~~p~~a~ll~rgl~T  252 (393)
T d1n8pa_         179 NTFLSP------YISNPLNFGADIVVHSATKYINGHSDVVLGVLATNNKPLYERLQFLQNAIGAIPSPFDAWLTHRGLKT  252 (393)
T ss_dssp             CTTTHH------HHCCGGGGTCSEEEEETTTTTTCSSCCCCEEEEESCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHTT
T ss_pred             cCccCc------ccCCchhhCCCEEEEccccccCCCCccccceeeecchhHHHHHHHHHhhcCCCCChHHHHHHHhCCcc
Confidence            998622      1222223345655  77799986 32134555544 55666665322222234466766666655554


Q ss_pred             HhhhcHHHHHHHHHHHHHHHHH
Q 017259          245 IRDEKLAERSAHLGEELRQHLF  266 (374)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~l~  266 (374)
                      +.  -..++..++...+.+.|+
T Consensus       253 l~--lR~~~~~~nA~~lA~~L~  272 (393)
T d1n8pa_         253 LH--LRVRQAALSANKIAEFLA  272 (393)
T ss_dssp             HH--HHHHHHHHHHHHHHHHHT
T ss_pred             hh--hHHHHHHHHHHHHHHHHH
Confidence            32  235555666666666664

>d2c0ra1 c.67.1.4 (A:2-362) Phosphoserine aminotransferase, PSAT {Bacillus circulans, subsp. alkalophilus [TaxId: 1397]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus circulans, subsp. alkalophilus [TaxId: 1397]

Probab=99.51  E-value=2e-14  Score=130.87  Aligned_cols=291  Identities=10%  Similarity=0.039  Sum_probs=153.4

Q ss_pred             CCcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccc-cCCcc
Q 017259           20 NDKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISM-SCDNE   95 (374)
Q Consensus        20 ~~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~-~~~~~   95 (374)
                      .+.+++..+.|+++++.+   .+++++|++++...++....    ..+|     +++++......+....-... .+...
T Consensus        47 ~~~~~~~r~~l~~l~~~~~~~~i~~~~gs~t~~~ea~~~~l----~~~~-----~~~l~~~~g~~~~~~~~~~~~~g~~~  117 (361)
T d2c0ra1          47 EAVHNEAQARLLALLGNPTGYKVLFIQGGASTQFAMIPMNF----LKEG-----QTANYVMTGSWASKALKEAKLIGDTH  117 (361)
T ss_dssp             HHHHHHHHHHHHHHTTCCSSEEEEEESSHHHHHHHHHHHHH----CCTT-----CEEEEEECSHHHHHHHHHHHHHSCEE
T ss_pred             HHHHHHHHHHHHHHhCCCCCCEEEEECCCchHHHHHHHhcc----ccCC-----CceEEEeechhhhhhhhhhhhcCcee
Confidence            456788999999988664   57887777666655444333    4555     77776664433322111111 11000


Q ss_pred             ccccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCc
Q 017259           96 AIRGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLA  175 (374)
Q Consensus        96 ~~~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~  175 (374)
                      ..       .........+++.+++.+..  ...  ++++   +.+|...+    ++++.++|+++|+++++|.+++ ++
T Consensus       118 ~~-------~~~~~~~~~~~~~~~~~~~~--~~~--~~v~---~~tg~~~~----~~~i~~~~~~~~al~~vDavss-~g  178 (361)
T d2c0ra1         118 VA-------ASSEASNYMTLPKLQEIQLQ--DNA--AYLH---LTSNETIE----GAQFKAFPDTGSVPLIGDMSSD-IL  178 (361)
T ss_dssp             EE-------EECGGGTTCSCCCGGGCCCC--TTE--EEEE---EESEETTT----TEECSSCCCCTTSCEEEECTTT-TT
T ss_pred             ee-------eccccccccchhhhhhhccc--Ccc--eEEE---Eeccccee----cceEEEeeccCCceEEEEeecc-cc
Confidence            00       00000011134444444442  122  2222   33566666    7788899999999999999997 21


Q ss_pred             ccccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC-----------CCCCCCCCCHHHHHHHHHHHHH
Q 017259          176 RSGRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDV  244 (374)
Q Consensus       176 ~~g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~aa~~al~~  244 (374)
                        +.  .++...++.|+.+.+|.++++- ..++++..+.+.+.....           ........++.....+..+...
T Consensus       179 --~~--~id~~~~di~~~s~~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  253 (361)
T d2c0ra1         179 --SR--PFDLNQFGLVYAGAQKNLGPSG-VTVVIVREDLVAESPKHLPTMLRYDTYVKNNSLYNTPPSFGIYMVNEVLKW  253 (361)
T ss_dssp             --SS--CCCGGGCSEEEEETTTTTCCSS-CEEEEEEGGGSSSCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHH
T ss_pred             --cc--ccccccceeEEEeccccccccc-CcEEEEEhHHhhhCccccccccccccccccccccccccceeeehhhhHHHh
Confidence              12  2333445667778888877432 223333343332221111           0111223333333333333333


Q ss_pred             HhhhcHHHHHHHHHHHHHHHHHHHHHhCCCce---eeE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCC--
Q 017259          245 IRDEKLAERSAHLGEELRQHLFKIQQQFPNYV---KEV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD--  318 (374)
Q Consensus       245 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--  318 (374)
                      ....+.......+.++....+...........   ... ..+...+.+.+++..   +..++.+.|.++||.++.++.  
T Consensus       254 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~~~~~~~~~~~---~~~~~~~~L~~~GI~~~~G~~~~  330 (361)
T d2c0ra1         254 IEERGGLEGVQQANRKKASLIYDAIDQSGGFYRGCVDVDSRSDMNITFRLASEE---LEKEFVKASEQEGFVGLKGHRSV  330 (361)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHHHHHHHTSTTSSEESSCGGGBCSSEEEEECSCHH---HHHHHHHHHHHTTEESCBCCTTT
T ss_pred             hhhccchHHHHHHHHHHHHHhhhhhhhcccccccCCChhhccceEEEEECCCcc---cHHHHHHHHHHCCCEEecCCCcC
Confidence            33322222222222222222222222110111   111 112344555565432   678999999999999988742  


Q ss_pred             CEEEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          319 TIVRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       319 ~~lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.|||+....++.||+++++++|++..+
T Consensus       331 g~~RIs~~~~~~~edv~~Lv~~l~~~~~  358 (361)
T d2c0ra1         331 GGLRASIYNAVPYESCEALVQFMEHFKR  358 (361)
T ss_dssp             CSEEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             CeEEEEecCCCCHHHHHHHHHHHHHHHH
Confidence            3599999989999999999999998765

>d1dfoa_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Escherichia coli [TaxId: 562]

Probab=99.50  E-value=1.7e-12  Score=116.50  Aligned_cols=290  Identities=14%  Similarity=0.135  Sum_probs=180.2

Q ss_pred             HHHHHHh-cccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCCC
Q 017259           25 VFAERLT-SMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFGP  102 (374)
Q Consensus        25 ~l~~~l~-~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~~  102 (374)
                      .++.+.+ ++++.+.+ +-..||+.|+.+++.++     .++|     |+|+..+...-|+......... ......+.+
T Consensus        75 ~la~~ra~~lF~a~~anVqp~SGs~AN~av~~Al-----l~pG-----D~Il~l~l~~GGHlshg~~~~~-~g~~~~~~~  143 (416)
T d1dfoa_          75 QLAIDRAKELFGADYANVQPHSGSQANFAVYTAL-----LEPG-----DTVLGMNLAHGGHLTHGSPVNF-SGKLYNIVP  143 (416)
T ss_dssp             HHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECTTTTCCGGGTCTTSH-HHHHSEEEE
T ss_pred             HHHHHHHHHHhCCCcceeecccCccHHHHHHHHh-----cCCC-----Ceeeeccccccccccccccccc-cCceEEEEe
Confidence            3443333 35688865 66899999999999988     7888     9999999986555433322111 111111111


Q ss_pred             CCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCc
Q 017259          103 LLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRML  181 (374)
Q Consensus       103 ~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~  181 (374)
                      +..+  .--.-|.+++++..++.  +++++++-.  +......+    +++++++|++.|.++++|.+|. |+.-.|. +
T Consensus       144 y~~d--~~~~IDyd~l~~~a~~~--kPklIi~G~--S~y~r~~d----~~~~reiad~vga~l~~D~aH~~GLIa~g~-~  212 (416)
T d1dfoa_         144 YGID--ATGHIDYADLEKQAKEH--KPKMIIGGF--SAYSGVVD----WAKMREIADSIGAYLFVDMAHVAGLVAAGV-Y  212 (416)
T ss_dssp             ECBC--SSSSBCHHHHHHHHHHH--CCSEEEEEC--SSCCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHTS-S
T ss_pred             cccC--CccCccHHHHHHHHHHh--ccceEEecc--cccccccC----HHHHHHHHHhcCceEEcchhhhhcceeccc-c
Confidence            1111  00112889999888876  555666543  33344556    9999999999999999999997 5522221 1


Q ss_pred             ccccCCCCCcEEEec--ccccCCccchhhheeC---HHHHhhcCCCCC-CCCCCCCHHHHHHHHHHHHHHhh---hcHHH
Q 017259          182 ASDWEEVRPDMVILG--KALGGGVIPVSAVLAD---KEVMLCIQPGEH-GSTFGGNPLASAVAIASLDVIRD---EKLAE  252 (374)
Q Consensus       182 ~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~---~~~~~~~~~~~~-~~~~~~~~~~~~aa~~al~~~~~---~~~~~  252 (374)
                       -+.+. ..|+++.|  |+|.|+  |.|.++.+   +++.+++..... +..-++..-..++...++.....   .++.+
T Consensus       213 -~sP~~-~aDvvt~tThKtlrGP--rggiI~~~~~~~~~~~~i~~avfPg~qggp~~~~iaa~Aval~Ea~~~~fk~Y~~  288 (416)
T d1dfoa_         213 -PNPVP-HAHVVTTTTHKTLAGP--RGGLILAKGGSEELYKKLNSAVFPGGQGGPLMHVIAGKAVALKEAMEPEFKTYQQ  288 (416)
T ss_dssp             -CCCTT-TSSEEEEESSSTTCCC--SCEEEEESSCCHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHTTSHHHHHHHH
T ss_pred             -CCccc-ccceeeeehhhcccCC--CceEEEeccchHhHHHHHHhhhCcccccCccHHHHHHHHHHHHHHcCHHHHHHHH
Confidence             12222 34888665  888865  46667765   465555543211 11122233333444444554333   26778


Q ss_pred             HHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc----C------CCCEEE
Q 017259          253 RSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T------HDTIVR  322 (374)
Q Consensus       253 ~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~------~~~~lR  322 (374)
                      ++.++.+.+.+.|.+.+..   ++.. ....+++++++.+.  +.+..++.+.|.+.||.+.-    .      .+..||
T Consensus       289 qvv~NA~~La~~L~~~G~~---iv~g-gTdnHlvlvdl~~~--~~~G~~a~~~Le~~gI~~Nkn~iP~d~~~~~~~SGiR  362 (416)
T d1dfoa_         289 QVAKNAKAMVEVFLERGYK---VVSG-GTDNHLFLVDLVDK--NLTGKEADAALGRANITVNKNSVPNDPKSPFVTSGIR  362 (416)
T ss_dssp             HHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECGGG--TCCHHHHHHHHHHTTEECEECCCTTCSSCTTTCSEEE
T ss_pred             HHHHHHHHHHHHHHhCCcc---cccC-CCCCceeEEEeccc--CCCHHHHHHHHHHcCeEEeCCcCCCCCCCCCCCCceE
Confidence            8888888888888776432   2221 12457778887432  12577778888888998842    1      257899


Q ss_pred             EecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          323 LTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       323 i~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                      |..+    ....++|++++.+.|.++++
T Consensus       363 iGT~a~TtrG~~e~d~~~iA~~I~~~l~  390 (416)
T d1dfoa_         363 VGTPAITRRGFKEAEAKELAGWMCDVLD  390 (416)
T ss_dssp             EECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             eCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            9764    35688999999999999987

>d1kl1a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=99.49  E-value=3.2e-12  Score=114.16  Aligned_cols=286  Identities=13%  Similarity=0.087  Sum_probs=178.9

Q ss_pred             HHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCc-cccccCCCCCCC
Q 017259           29 RLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDN-EAIRGFGPLLPG  106 (374)
Q Consensus        29 ~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~-~~~~~~~~~~~~  106 (374)
                      +..+.++.+.+ +-..||+.|+.+++.++     .++|     |+|+..+...-|+..-........ .+.....++..+
T Consensus        77 ra~~lF~a~~anVqp~SGs~An~av~~al-----l~pG-----D~im~l~l~~GGHlshg~~~~~~g~~~~~~~y~~d~~  146 (405)
T d1kl1a_          77 RAKQLFGAEHANVQPHSGAQANMAVYFTV-----LEHG-----DTVLGMNLSHGGHLTHGSPVNFSGVQYNFVAYGVDPE  146 (405)
T ss_dssp             HHHHHHCCSEEECCCSSHHHHHHHHHHHH-----CCTT-----CEEEEECGGGTCCGGGTCTTSHHHHHSEEEEECBCTT
T ss_pred             HHHHHhCCCcceeeccCchHHHHHHHHHh-----cCCC-----CEEEEeecccccccccCccccccceEEEEEEeccchh
Confidence            33446688865 78899999999999988     7788     999999987655433222111000 000000011111


Q ss_pred             ceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccccCccccc
Q 017259          107 HLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSGRMLASDW  185 (374)
Q Consensus       107 ~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g~~~~~~~  185 (374)
                      ...   -|.+++++.++++  +++++++-...  .....+    +++++++|++.|.+|+.|-+|. |+.-.|. +. +.
T Consensus       147 ~~~---ID~d~l~~~a~~~--kPklIi~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~~GLIa~g~-~~-~P  213 (405)
T d1kl1a_         147 THV---IDYDDVREKARLH--RPKLIVAAASA--YPRIID----FAKFREIADEVGAYLMVDMAHIAGLVAAGL-HP-NP  213 (405)
T ss_dssp             TCS---BCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHHTCEEEEECTTTHHHHHTTS-SC-CS
T ss_pred             ccc---ccHHHHHHHHHhh--CcceEEecccc--cccccC----hHHHHHHHhhhCCEEecchhhHhhhhhhhh-cC-Ch
Confidence            000   1789999988876  55566664322  223444    9999999999999999999997 5422221 11 22


Q ss_pred             CCCCCcEEEec--ccccCCccchhhheeCHHHHhhcCCCCCCCCC-CCCHHHHHHHHHHHHHHhh---hcHHHHHHHHHH
Q 017259          186 EEVRPDMVILG--KALGGGVIPVSAVLADKEVMLCIQPGEHGSTF-GGNPLASAVAIASLDVIRD---EKLAERSAHLGE  259 (374)
Q Consensus       186 ~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~aa~~al~~~~~---~~~~~~~~~~~~  259 (374)
                      +. ..|+++.|  |+|.|+  |.|.++.++++.+.+.....-... ++..-..++...++.....   .++.+++.++.+
T Consensus       214 ~~-~aDvvt~tThKtlrGP--rgg~I~~~~~~~~~i~~avfPg~qggp~~~~iAa~Aval~Ea~~~~fk~Ya~qvv~NAk  290 (405)
T d1kl1a_         214 VP-YAHFVTTTTHKTLRGP--RGGMILCQEQFAKQIDKAIFPGIQGGPLMHVIAAKAVAFGEALQDDFKAYAKRVVDNAK  290 (405)
T ss_dssp             TT-TCSEEEEESSSTTCCC--SCEEEEECHHHHHHHHHHHTTTTCSSCCHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHH
T ss_pred             hh-hhhheeccccccccCC--CCceEEecchhHHHHHhhhCcccccCcchhHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            22 35888777  888865  567788888877776543222222 2233333343344444322   257788888888


Q ss_pred             HHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc----C------CCCEEEEecC---
Q 017259          260 ELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP----T------HDTIVRLTPP---  326 (374)
Q Consensus       260 ~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~----~------~~~~lRi~~~---  326 (374)
                      .+.+.|.+.+..   ++.. ....+++++++....  .+..+..+.|.+.||.+.-    .      .+..|||..+   
T Consensus       291 aLa~~L~~~G~~---vv~g-gTd~H~vlvdl~~~~--~~g~~ae~~Le~agI~~Nkn~iP~d~~~~~~~SGiRiGT~a~T  364 (405)
T d1kl1a_         291 RLASALQNEGFT---LVSG-GTDNHLLLVDLRPQQ--LTGKTAEKVLDEVGITVNKNTIPYDPESPFVTSGIRIGTAAVT  364 (405)
T ss_dssp             HHHHHHHHTTCE---EGGG-SCSSSEEEEECGGGT--CCHHHHHHHHHHHTEECEECCCTTCSSCTTTCSEEEEECHHHH
T ss_pred             HHHHHHhcCCce---eecC-CCccceeeccccccC--CcHHHHHHHHHHcCeEEcCCcCCCCCCCCCCCCceeecCHHHH
Confidence            888888776432   2221 124677888874321  2566666667778998852    2      2478999764   


Q ss_pred             -CCCCHHHHHHHHHHHHHHHh
Q 017259          327 -LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       327 -~~~~~e~i~~~~~~l~~~~~  346 (374)
                       ....++|+.++.+.|.++++
T Consensus       365 trG~~e~dm~~ia~~I~~~l~  385 (405)
T d1kl1a_         365 TRGFGLEEMDEIAAIIGLVLK  385 (405)
T ss_dssp             HTTCCHHHHHHHHHHHHHHHT
T ss_pred             hCCCCHHHHHHHHHHHHHHHh
Confidence             35688999999999999997

>d1bjna_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.7e-13  Score=124.16  Aligned_cols=293  Identities=8%  Similarity=-0.048  Sum_probs=155.5

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      +.+++.++.|+++++.+   .+++++|++++.+.+.....    ..++     +.+++....+.+.......... ....
T Consensus        46 ~l~~~~r~~l~~l~~~~~~~~v~~~~gs~t~~~~a~~~~~----~~~~-----~~v~~~~~~~~~~~~~~~~~~~-~~~~  115 (360)
T d1bjna_          46 QVAEEAEKDFRDLLNVPSNYKVLFCHGGGRGQFAAVPLNI----LGDK-----TTADYVDAGYWAASAIKEAKKY-CTPN  115 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH----CTTC-----CEEEEEESSHHHHHHHHHHTTT-SEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEECCchHHHHhhhhhcc----cccc-----cccceecccchhhhhHHHHhhc-Cccc
Confidence            45788999999988653   57888888777776655443    3344     7777776554332222111111 0000


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ...     ....-...+.+.+++.+.   .+++++++....+.+|...+    ++.+  .++.+++.+++|.+++ ++  
T Consensus       116 ~~~-----~~~~~~~~~~~~~~~~~~---~~~~~v~v~~~~~~t~~~~~----~~~i--~~~~~~~~v~vDa~~~-~~--  178 (360)
T d1bjna_         116 VFD-----AKVTVDGLRAVKPMREWQ---LSDNAAYMHYCPNETIDGIA----IDET--PDFGADVVVAADFSST-IL--  178 (360)
T ss_dssp             EEE-----CEEEETTEEEECCGGGCC---CCSSCSCEEECSEETTTTEE----CCCC--CCCCTTCCEEEECTTT-TT--
T ss_pred             eee-----ccccCCCcchhhhhhhhc---cCCceeEEEecccccccCcc----ccce--ecccccceeeeeeecc-cc--
Confidence            000     000000012223333333   34444455555556666665    3333  4578899999998876 21  


Q ss_pred             ccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC-----------CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          178 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                        ...++..+++.++.+.+|.++++. +.++++..+...+.....           ...............+........
T Consensus       179 --~~~vd~~~~dv~~~ss~k~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (360)
T d1bjna_         179 --SRPIDVSRYGVIYAGAQKNIGPAG-LTIVIVREDLLGKANIACPSILDYSILNDNGSMFNTPPTFAWYLSGLVFKWLK  255 (360)
T ss_dssp             --SSCCCGGGCSEEEEETTTTTSSTT-CEEEEEEGGGCSCCCTTSCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred             --ceeeeeccceeEEEEcccccccCC-CceeEeeehhhhhccccCCcchhhHHHHhhhhhccccccchHHHHHHHHHHHh
Confidence              123344456666778889988654 455555554433222211           011122223333333333332222


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCce---eeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCCC--CEE
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYV---KEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTHD--TIV  321 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~---~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~~--~~l  321 (374)
                      .....+...++..+....+...........   .....+...+.|.+++..   ...++.+.|.++||.++.++.  +.+
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rs~~v~~f~~~~~~---~~~~~~~~l~~~Gi~~~~G~~~~g~~  332 (360)
T d1bjna_         256 ANGGVAEMDKINQQKAELLYGVIDNSDFYRNDVAKRNRSRMNVPFQLADSA---LDKLFLEESFAAGLHALKGHRVVGGM  332 (360)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHHCSSEECCBCGGGBCSSEEEEEESSGG---GHHHHHHHHHHTTEECCBCCTTTCSE
T ss_pred             hhhhHHHHHHHHHHHHHHHHHhhhccccccccCCcccccceEEEEEcCCcc---cHHHHHHHHHHCCCEeecCCCccCeE
Confidence            222222222222222222222222211111   111123455667776543   678899999999999987642  459


Q ss_pred             EEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          322 RLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       322 Ri~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      ||+....+|+||++++++.|++..+
T Consensus       333 Ris~~~~~t~edV~~li~~l~e~~~  357 (360)
T d1bjna_         333 RASIYNAMPLEGVKALTDFMVEFER  357 (360)
T ss_dssp             EEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEecCCCCHHHHHHHHHHHHHHHH
Confidence            9999889999999999999998765

>d1w23a_ c.67.1.4 (A:) Phosphoserine aminotransferase, PSAT {Bacillus alcalophilus [TaxId: 1445]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Phosphoserine aminotransferase, PSAT
species: Bacillus alcalophilus [TaxId: 1445]

Probab=99.42  E-value=2.7e-13  Score=122.97  Aligned_cols=291  Identities=12%  Similarity=0.015  Sum_probs=157.2

Q ss_pred             CcHHHHHHHHhcccCCC---eEEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCcccc
Q 017259           21 DKFPVFAERLTSMFGYD---MVLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAI   97 (374)
Q Consensus        21 ~~~~~l~~~l~~~~~~~---~~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~   97 (374)
                      ..+++.++.|+++++.+   .+++++|++++...+.....    .+++     +.+++...++++...............
T Consensus        48 ~~~~~~r~~l~~l~~~~~~~~i~~~~gt~~~~~~~~~~~~----~~~~-----~~v~~~~~g~~~~~~~~~~~~~~~~~~  118 (360)
T d1w23a_          48 EVHEQAQNLLRELLQIPNDYQILFLQGGASLQFTMLPMNL----LTKG-----TIGNYVLTGSWSEKALKEAKLLGETHI  118 (360)
T ss_dssp             HHHHHHHHHHHHHHTCCTTEEEEEESSHHHHHHHHHHHHH----CCTT-----CEEEEEECSHHHHHHHHHHHTTSEEEE
T ss_pred             HHHHHHHHHHHHHhCCCCCCEEEEeCCcHHHHHHHHHhhh----cccC-----cccceeeccchhhhhHHHHHHhhhcce
Confidence            36778899999988653   57888888777776666554    4445     777777655544433322211110000


Q ss_pred             ccCCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCccc
Q 017259           98 RGFGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARS  177 (374)
Q Consensus        98 ~~~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~  177 (374)
                      ...      .......++++++..+.    .....+++   +.+|.+.+    +++|.++|+++|+++|+|.+++ ++  
T Consensus       119 ~~~------~~~~~~~~~~~~~~~~~----~~~~~~~~---~~tg~~~~----~~~i~~~~~~~g~l~ivDavqs-~g--  178 (360)
T d1w23a_         119 AAS------TKANSYQSIPDFSEFQL----NENDAYLH---ITSNNTIY----GTQYQNFPEINHAPLIADMSSD-IL--  178 (360)
T ss_dssp             EEE------CGGGTSCSCCCGGGCCC----CTTEEEEE---EESEETTT----TEECSSCCCCCSSCEEEECTTT-TT--
T ss_pred             eec------cccccccchhhhhhccc----ccccceeE---ecCCcccc----ceeeeeccccceeeEEeecccc-cc--
Confidence            000      00000112222222222    22233333   34577777    8899999999999999999998 21  


Q ss_pred             ccCcccccCCCCCcEEEecccccCCccchhhheeCHHHHhhcCCC-----------CCCCCCCCCHHHHHHHHHHHHHHh
Q 017259          178 GRMLASDWEEVRPDMVILGKALGGGVIPVSAVLADKEVMLCIQPG-----------EHGSTFGGNPLASAVAIASLDVIR  246 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~sK~~~~G~~~~G~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~aa~~al~~~~  246 (374)
                      +..+  +...++.|+.+++|.++++- +.|+++..+...+.....           ..............+...++....
T Consensus       179 ~~~i--d~~~~~vd~~~~~~~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  255 (360)
T d1w23a_         179 SRPL--KVNQFGMIYAGAQKNLGPSG-VTVVIVKKDLLNTKVEQVPTMLQYATHIKSDSLYNTPPTFSIYMLRNVLDWIK  255 (360)
T ss_dssp             SSCC--CGGGCSEEEEETTTTTSCTT-CEEEEEEHHHHCSCCTTCCGGGCHHHHHHTTTCSSCCCHHHHHHHHHHHHHHH
T ss_pred             cccc--ccccccceEEeeccccccCC-cceeeEechhhhcccccCCcchhhhhhhhhhhhcccccceeeechhHHHHHHh
Confidence            2222  33345668888988776433 334444444333322211           011122333333334443444333


Q ss_pred             hhcHHHHHHHHHHHHHHHHHHHHHhCCCcee---eE-EEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEeccCC--CCE
Q 017259          247 DEKLAERSAHLGEELRQHLFKIQQQFPNYVK---EV-RGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKPTH--DTI  320 (374)
Q Consensus       247 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---~~-~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~~~--~~~  320 (374)
                      +........+...+....+............   .. ..+...+.|.+++..   ...++.+.|.++||.++.++  -+.
T Consensus       256 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~rS~~vvsf~i~~~~---~~~~~~~~l~~~GI~~~~G~~~~gg  332 (360)
T d1w23a_         256 DLGGAEAIAKQNEEKAKIIYDTIDESNGFYVGHAEKGSRSLMNVTFNLRNEE---LNQQFLAKAKEQGFVGLNGHRSVGG  332 (360)
T ss_dssp             HTTHHHHHHHHHHHHHHHHHHHHHTTTTSSEESSCGGGBCSSEEEEECSSHH---HHHHHHHHHHHTTEESCBCCTTTCS
T ss_pred             hhhhhHHHHHHHHHHHHHHHHHHhhcccccccCCChhhcceeEEEEEcCCCc---cHHHHHHHHHHCCCeeeeCCCccCc
Confidence            3322222222222222222222211111111   11 112335666665432   57789999999999998764  246


Q ss_pred             EEEecCCCCCHHHHHHHHHHHHHHHh
Q 017259          321 VRLTPPLSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       321 lRi~~~~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +|++....+|.||++++++.|++..+
T Consensus       333 iRiS~~~~~t~e~V~~Li~~~~~~~~  358 (360)
T d1w23a_         333 CRASIYNAVPIDACIALRELMIQFKE  358 (360)
T ss_dssp             EEEECCTTSCHHHHHHHHHHHHHHHH
T ss_pred             EEEEeeCCCCHHHHHHHHHHHHHHHh
Confidence            99998777799999999999998876

>d2a7va1 c.67.1.4 (A:26-488) Serine hydroxymethyltransferase {Human (Homo sapiens), mitochondrial [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Human (Homo sapiens), mitochondrial [TaxId: 9606]

Probab=99.36  E-value=3.9e-11  Score=108.93  Aligned_cols=293  Identities=12%  Similarity=0.068  Sum_probs=166.1

Q ss_pred             cHHHHHHHHh-cccCCCe-----EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccc-----cc
Q 017259           22 KFPVFAERLT-SMFGYDM-----VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAI-----SM   90 (374)
Q Consensus        22 ~~~~l~~~l~-~~~~~~~-----~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~-----~~   90 (374)
                      ..+.++.+.+ +.++.+.     -+-..||+.|+.+++.++     +++|     |+|+..+...-|+..-..     ..
T Consensus        73 ~iE~la~~ra~~lF~~~~a~w~vNVqp~SGs~An~av~~al-----l~pg-----D~Im~l~l~~GGHlshg~~~~~~~~  142 (463)
T d2a7va1          73 EIELLCQRRALEAFDLDPAQWGVNVQPYSGSPANLAVYTAL-----LQPH-----DRIMGLDLPDGGHLTHGYMSDVKRI  142 (463)
T ss_dssp             HHHHHHHHHHHHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----CCSC-----EECCC--------------------
T ss_pred             HHHHHHHHHHHHHhCCCchhccCCccccccHHHHHHHHHHH-----cCCC-----ceEEeeccCcCcccccccccccccc
Confidence            3444444444 4567664     378899999999999988     6788     999988876544322111     11


Q ss_pred             cCCccccccCCCCCCCceeccC-CCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEec
Q 017259           91 SCDNEAIRGFGPLLPGHLKVDF-GDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADE  169 (374)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~-~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~De  169 (374)
                      .. ......+.++  ++..-.. -|.+++++..+++  +++++++-...  .....+    +++++++|++.|.+|+.|-
T Consensus       143 ~~-~g~~~~~~~Y--~~d~~~~~IDyd~~~~~a~~~--kPklIi~G~S~--y~r~~d----~~~~reIad~vga~l~~D~  211 (463)
T d2a7va1         143 SA-TSIFFESMPY--KLNPKTGLIDYNQLALTARLF--RPRLIIAGTSA--YARLID----YARMREVCDEVKAHLLADM  211 (463)
T ss_dssp             ------------C--CBCTTTCSBCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHTTCEEEEEC
T ss_pred             cc-eeeEeeeeee--eccCCCCcCcHHHHHHHHhhc--CCceEEecccc--cccccC----HHHHHHHhhcccceEEech
Confidence            00 0000001111  1110000 1789999888876  55666664322  233445    9999999999999999999


Q ss_pred             ccc-CCcccccCcccccCCCCCcEEEec--ccccCCccchhhheeCHH---------------HHhhcCCCC-CCCCCCC
Q 017259          170 IQS-GLARSGRMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPGE-HGSTFGG  230 (374)
Q Consensus       170 a~~-~~~~~g~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~---------------~~~~~~~~~-~~~~~~~  230 (374)
                      +|. |+.-.|.. . +.+. ..|+++.|  |.|.|.  |.|.++.+++               +.+++.... -+..-++
T Consensus       212 aH~aGLIA~g~~-~-sP~~-~aDvvt~tTHKTlrGP--rgGiIl~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggp  286 (463)
T d2a7va1         212 AHISGLVAAKVI-P-SPFK-HADIVTTTTHKTLRGA--RSGLIFYRKGVKAVDPKTGREIPYTFEDRINFAVFPSLQGGP  286 (463)
T ss_dssp             GGGHHHHHTTSS-C-CGGG-TCSEEEEESSGGGCSC--SCEEEEEECSEEEEETTTEEEEECCCHHHHHHHHTTTTCCSC
T ss_pred             hhhhHHhhhhhh-c-Chhh-hhhhhhchhhhhhcCC--CceEEEEcccccccccccCccchhHHHHHhhhhcCcccchhh
Confidence            997 55322211 1 1122 35888776  888865  4566776652               222222110 1111122


Q ss_pred             CHHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHH
Q 017259          231 NPLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMK  307 (374)
Q Consensus       231 ~~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~  307 (374)
                      ..-..++...++....+.   ++.+++.++.+.+.+.|.+.+..   ++.. ....+++++++.+.  +.+..+..+.|.
T Consensus       287 h~h~iAa~Ava~~ea~~~~fk~Ya~qVv~NAk~La~~L~~~G~~---vv~g-gTdnHlvlvdl~~~--~~~G~~ae~~Le  360 (463)
T d2a7va1         287 HNHAIAAVAVALKQACTPMFREYSLQVLKNARAMADALLERGYS---LVSG-GTDNHLVLVDLRPK--GLDGARAERVLE  360 (463)
T ss_dssp             CHHHHHHHHHHHHHHHSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEECTTT--TCCHHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHhCCCe---eecC-CCCCceeeeecccc--CCCHHHHHHHHH
Confidence            223333333344443332   56777778888888877766432   2221 12456777777432  126788888888


Q ss_pred             HCCeEecc---------CCCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          308 ERGILAKP---------THDTIVRLTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       308 ~~Gi~v~~---------~~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                      +.||.+.-         ..+..|||..+    ....++|+.++.+.|.++++
T Consensus       361 ~~gI~~Nkn~iP~D~~~~~~sGiRiGT~a~TtrG~~e~dm~~iA~~I~~~l~  412 (463)
T d2a7va1         361 LVSITANKNTCPGDRSAITPGGLRLGAPALTSRQFREDDFRRVVDFIDEGVN  412 (463)
T ss_dssp             HTTEECEEECCTTCCCSSSCSEEEEESHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             hccCccCCccCCCCCCCCCCCceEeCCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence            99998842         23578999764    34678999999998887764

>d1wyua1 c.67.1.7 (A:1-437) Glycine dehydrogenase (decarboxylating) subunit 1 {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase (decarboxylating) subunit 1
species: Thermus thermophilus [TaxId: 274]

Probab=99.32  E-value=3.2e-11  Score=110.39  Aligned_cols=285  Identities=14%  Similarity=0.175  Sum_probs=163.5

Q ss_pred             cHHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccC
Q 017259           22 KFPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGF  100 (374)
Q Consensus        22 ~~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~  100 (374)
                      ..-++.+.|++++|.+.+ +-...|++|...++.+++.+.        +++++++....+ ..+.........       
T Consensus       109 ~l~e~q~~l~eltGmd~~n~s~~~ga~a~~~~~~~~~~~~--------~~~~~~v~~~~~-p~~~~v~~t~a~-------  172 (437)
T d1wyua1         109 ATFEYQTMIAELAGLEIANASMYDGATALAEGVLLALRET--------GRMGVLVSQGVH-PEYRAVLRAYLE-------  172 (437)
T ss_dssp             HHHHHHHHHHHHHTSSEECSCBSSHHHHHHHHHHHHHHHH--------TCCEEEEETTSC-HHHHHHHHHHHH-------
T ss_pred             HHHHHHHHHHHhhCCCccccCchHHHHHHHHHHHHHHhhh--------cccccccccccC-hHHhhhhhhhcc-------
Confidence            355789999999999976 555667788887887776543        126677766553 322222111100       


Q ss_pred             CCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEeccccCCcccccC
Q 017259          101 GPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQSGLARSGRM  180 (374)
Q Consensus       101 ~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~~~~~~g~~  180 (374)
                       +...+++.++.++....   +.+.+++++++++..+ |..|.+.+    +++|.+++++.|.+++.|.....++-...+
T Consensus       173 -~~g~~vv~v~~~~~~~~---~~~~~~~~Aavmi~~P-nt~G~~ed----~~~i~~~~h~~G~l~~~~ad~~al~~l~~P  243 (437)
T d1wyua1         173 -AVGAKLLTLPLEGGRTP---LPEVGEEVGAVVVQNP-NFLGALED----LGPFAEAAHGAGALFVAVADPLSLGVLKPP  243 (437)
T ss_dssp             -HTTCEEEEECCBTTBCC---CCCCCTTEEEEEEESS-CTTSBCCC----HHHHHHHHHHTTCEEEEECCTTGGGTBCCH
T ss_pred             -cceeeEEeeecccccch---hhhhccceeEEEEccc-cccccccc----hHHHHHHhhhccceEEeeechhhhhccccc
Confidence             01122333333221110   1123468999888766 44576665    999999999999988877433222111111


Q ss_pred             cccccCCCCCcEEEe-ccccc-----CCccchhhheeCHHHHhhcCCC-----------------------------CCC
Q 017259          181 LASDWEEVRPDMVIL-GKALG-----GGVIPVSAVLADKEVMLCIQPG-----------------------------EHG  225 (374)
Q Consensus       181 ~~~~~~~~~~d~~s~-sK~~~-----~G~~~~G~~~~~~~~~~~~~~~-----------------------------~~~  225 (374)
                         .  .+..|++.. +|.|+     ||- ..|++.+++++...+-..                             ..+
T Consensus       244 ---g--~~GaDi~~g~~q~fg~p~g~GGP-~~G~~a~~~~l~r~lPgrivg~s~d~~G~~~~~l~lqtreqhIrRekats  317 (437)
T d1wyua1         244 ---G--AYGADIAVGDGQSLGLPMGFGGP-HFGFLATKKAFVRQLPGRLVSETVDVEGRRGFILTLQAREQYIRRAKAKS  317 (437)
T ss_dssp             ---H--HHTCSEEEEECTTTTCCCGGGCS-CCEEEEECGGGGGGCCSCCEEEEEBTTSCEEEEECCGGGSHHHHGGGSSC
T ss_pred             ---c--ccccceEeeccceeccccCCCcC-ccccccccchhhccccccccccccccCCcccceeeccccccccccccccc
Confidence               1  123466533 45544     343 456777888776554321                             011


Q ss_pred             CCCCCCHHHHHHHHHHHHHHhhhc---HHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHH
Q 017259          226 STFGGNPLASAVAIASLDVIRDEK---LAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDI  302 (374)
Q Consensus       226 ~~~~~~~~~~~aa~~al~~~~~~~---~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~  302 (374)
                      ..++.+.+.+..+...+..+..++   .-++...+.+++.++|.++.    ++.. ......+--|.+.-+.   +..++
T Consensus       318 nict~q~l~a~~a~~Y~~~lG~~GL~~ia~~a~~~A~yl~~~L~~~~----g~~~-~~~~~~f~ef~v~~~~---~~~~i  389 (437)
T d1wyua1         318 NITTNAQLTALMGAMYLAALGPEGLREVALKSVEMAHKLHALLLEVP----GVRP-FTPKPFFNEFALALPK---DPEAV  389 (437)
T ss_dssp             CCCSCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTST----TCEE-CSCSSBCSEEEEECSS---CHHHH
T ss_pred             chhhHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHHHHHHhhhcC----Ceec-cCCCCeeeEEEEECCC---CHHHH
Confidence            123344444444555556555554   34455556666666665542    2211 1111222233333222   67899


Q ss_pred             HHHHHHCCeEecc-----CCCCEEEEecCCCCCHHHHHHHHHHHHHHH
Q 017259          303 CLKMKERGILAKP-----THDTIVRLTPPLSISSNELQEGSKALHDVL  345 (374)
Q Consensus       303 ~~~l~~~Gi~v~~-----~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~  345 (374)
                      .++|+++|+....     ...+.+.|++....|++|+|+++++|++++
T Consensus       390 ~k~L~d~G~~~~~~~~~~~~~~~lli~~TE~~tkeeiD~~v~al~eil  437 (437)
T d1wyua1         390 RRALAERGFHGATPVPREYGENLALFAATELHEEEDLLALREALKEVL  437 (437)
T ss_dssp             HHHHHHTTCCCCEECCTTSCSSEEEEECCTTCCHHHHHHHHHHHHHHC
T ss_pred             HHHHHhCCCCCCcccccCCCCCeEEEecCCCCCHHHHHHHHHHHHHhC
Confidence            9999999986422     236889999999999999999999998874

>d1rv3a_ c.67.1.4 (A:) Serine hydroxymethyltransferase {Rabbit (Oryctolagus cuniculus) [TaxId: 9986]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: GABA-aminotransferase-like
domain: Serine hydroxymethyltransferase
species: Rabbit (Oryctolagus cuniculus) [TaxId: 9986]

Probab=99.27  E-value=6.1e-10  Score=101.29  Aligned_cols=284  Identities=13%  Similarity=0.059  Sum_probs=169.2

Q ss_pred             hcccCCC----e-EEecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccC-C----cc-cccc
Q 017259           31 TSMFGYD----M-VLPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSC-D----NE-AIRG   99 (374)
Q Consensus        31 ~~~~~~~----~-~~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~-~----~~-~~~~   99 (374)
                      .+.++.+    . -+-..||+.|+.+++.++     .++|     |+|+..+...-|+..-...... .    .. +...
T Consensus        87 ~~lF~~~~~~~~anVqp~SGs~An~av~~al-----l~pg-----D~im~~~l~~GGHlshg~~~~~~~~~~~~~~~~~~  156 (470)
T d1rv3a_          87 LQAYGLDPQCWGVNVQPYSGSPANFAVYTAL-----VEPH-----GRIMGLDLPDGGHLTHGFMTDKKKISATSIFFESM  156 (470)
T ss_dssp             HHHTTCCTTTEEEECCCSSHHHHHHHHHHHH-----TCTT-----CEEEEECGGGTCCGGGCCBCSSCBCSHHHHHSEEE
T ss_pred             HHHhCCChhhccccccccCCccHHHHHHHHh-----cCCC-----CeEeeeccccCCcccccccccCCCcccccceeEee
Confidence            4466765    3 377889999999999988     6778     9999998765444322211110 0    00 0000


Q ss_pred             CCCCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc-CCcccc
Q 017259          100 FGPLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS-GLARSG  178 (374)
Q Consensus       100 ~~~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~-~~~~~g  178 (374)
                      ..++..+...   -|.+++++..++.  +++++++-...  .....+    +++++++|++.|.+|+.|-+|. |+.-.|
T Consensus       157 ~y~v~~~~~~---IDyd~l~~~a~~~--kPklIi~G~S~--y~r~~d----~~~~reIad~vga~l~~D~aH~aGLIA~g  225 (470)
T d1rv3a_         157 AYKVNPDTGY---IDYDRLEENARLF--HPKLIIAGTSC--YSRNLD----YGRLRKIADENGAYLMADMAHISGLVVAG  225 (470)
T ss_dssp             EECBCTTTCS---BCHHHHHHHHHHH--CCSEEEECCSS--CCSCCC----HHHHHHHHHHTTCEEEEECTTTHHHHHHT
T ss_pred             EEEEecccCc---ccHHHHHHHHHhh--CcceEeechhh--ccccCC----HHHHHHHHhccCCeEEecchhhhhhcccc
Confidence            0011111000   1788998888876  55666664322  233455    9999999999999999999997 552222


Q ss_pred             cCcccccCCCCCcEEEec--ccccCCccchhhheeCHH---------------HHhhcCCCCC-CCCCCCCHHHHHHHHH
Q 017259          179 RMLASDWEEVRPDMVILG--KALGGGVIPVSAVLADKE---------------VMLCIQPGEH-GSTFGGNPLASAVAIA  240 (374)
Q Consensus       179 ~~~~~~~~~~~~d~~s~s--K~~~~G~~~~G~~~~~~~---------------~~~~~~~~~~-~~~~~~~~~~~~aa~~  240 (374)
                      .. . +.+. ..|+++.|  |.|.|.  |.|.++.+++               +.+++..... +..-++..-..++...
T Consensus       226 ~~-~-sPl~-~aDvvt~tTHKtlrGP--rgGiI~~~~~~~~~~~~~~~~~~~~~~~~i~~avFPg~qggph~~~IAa~Av  300 (470)
T d1rv3a_         226 VV-P-SPFE-HCHVVTTTTHKTLRGC--RAGMIFYRRGVRSVDPKTGKEILYNLESLINSAVFPGLQGGPHNHAIAGVAV  300 (470)
T ss_dssp             SS-C-CGGG-TCSEEEEESSGGGCCC--SCEEEEEECSBCC-------CCBCCHHHHHHHHHTTTTCCSCCHHHHHHHHH
T ss_pred             cc-C-Chhh-eeeeeeeehhhhccCC--cceEEEEccccccccccccchhHHHHHHHHhhhcCccccccchhhHHHHHHH
Confidence            11 1 1121 34888766  888765  4566766543               3333332111 1111223333333334


Q ss_pred             HHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHHCCeEecc--
Q 017259          241 SLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKERGILAKP--  315 (374)
Q Consensus       241 al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~Gi~v~~--  315 (374)
                      ++......   ++.+++.++.+.+.+.|.+.+..   ++.. ....+++++++...  +.+..++.+.|.+.||.+.-  
T Consensus       301 a~~ea~~~~fk~Ya~qvv~NAk~La~~L~~~G~~---v~~g-gTdnHlvlvdl~~~--g~~g~~ae~~Le~~gI~~Nkn~  374 (470)
T d1rv3a_         301 ALKQAMTPEFKEYQRQVVANCRALSAALVELGYK---IVTG-GSDNHLILVDLRSK--GTDGGRAEKVLEACSIACNKNT  374 (470)
T ss_dssp             HHHHHTSHHHHHHHHHHHHHHHHHHHHHHHTTCE---EGGG-SCSSSEEEEEGGGG--TCCHHHHHHHHHHTTEECEEEC
T ss_pred             HHHHhcChHHHHHHHHHHHHHHHHHHHHHhCCce---eccC-CCCCceEEEeeccc--CCcHHHHHHHHHHcCcEECCCc
Confidence            55554332   56677777777777777765422   2221 12467778777432  12677777778888998842  


Q ss_pred             -------CCCCEEEEecC----CCCCHHHHHHHHHHHHHHHh
Q 017259          316 -------THDTIVRLTPP----LSISSNELQEGSKALHDVLE  346 (374)
Q Consensus       316 -------~~~~~lRi~~~----~~~~~e~i~~~~~~l~~~~~  346 (374)
                             ..+..|||..+    ....++|+.++.+.|.++++
T Consensus       375 iP~D~~~~~~sGiRiGT~alTtrG~~e~dm~~iA~~I~~~l~  416 (470)
T d1rv3a_         375 CPGDKSALRPSGLRLGTPALTSRGLLEKDFQKVAHFIHRGIE  416 (470)
T ss_dssp             CSSCSCTTSCCEEEEECHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             CCCCCCCCCCCeeEecCHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence                   23578999764    45688999999999988874

>d1wyub1 c.67.1.7 (B:2-472) Glycine dehydrogenase subunit 2 (P-protein) {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: PLP-dependent transferase-like
superfamily: PLP-dependent transferases
family: Glycine dehydrogenase subunits (GDC-P)
domain: Glycine dehydrogenase subunit 2 (P-protein)
species: Thermus thermophilus [TaxId: 274]

Probab=99.21  E-value=2e-09  Score=99.48  Aligned_cols=295  Identities=19%  Similarity=0.142  Sum_probs=168.5

Q ss_pred             HHHHHHHHhcccCCCeE-EecCChHHHHHHHHHHHHHcccccccCCCCccEEEEeccCCCCcccccccccCCccccccCC
Q 017259           23 FPVFAERLTSMFGYDMV-LPMNTGAEGVETALKLARKWGYVKKKFSIDEAIIVSCCGCFHGRTLAAISMSCDNEAIRGFG  101 (374)
Q Consensus        23 ~~~l~~~l~~~~~~~~~-~~~~~gs~a~~~al~~~~~~~~~~~G~~~~~~~vi~~~~~yhg~~~~~~~~~~~~~~~~~~~  101 (374)
                      .-++...+++++|.+-+ .-...|++|..-|+.+++.+. .++| ......++...+.+|................... 
T Consensus       108 lfEfQtmi~eLTGMdvaNaS~yDGatA~aeA~~ma~r~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-  184 (471)
T d1wyub1         108 MWELGEYLKALTGMDAITLEPAAGAHGELTGILIIRAYH-EDRG-EGRTRRVVLVPDSAHGSNPATASMAGYQVREIPS-  184 (471)
T ss_dssp             HHHHHHHHHHHHTCSEEECCCSSHHHHHHHHHHHHHHHH-HHTT-CTTTCCEEEEETTSCTHHHHHHHHTTCEEEEECB-
T ss_pred             HHHHHHHHHHHhCCCccccccchHHHHHHHHHHHHHHHh-hhcc-cccccccccCCcccccceeeeeecccceeecccc-
Confidence            34688889999998854 223345556655555554332 2222 1122455666666665444433332211111000 


Q ss_pred             CCCCCceeccCCCHHHHHHHHHhcCCcEEEEEEccccCCCCcccCChhHHHHHHHHHHhcCCEEEEecccc----CCccc
Q 017259          102 PLLPGHLKVDFGDITALEKIFKESGDQIAGFLFEPIQGEAGVIIPPDGYLKAVRDLCSKYNILMIADEIQS----GLARS  177 (374)
Q Consensus       102 ~~~~~~~~~~~~d~~~le~~l~~~~~~~~~vi~~~~~~~~g~~~~~~~~l~~l~~l~~~~~i~li~Dea~~----~~~~~  177 (374)
                            ......+.+.++....   +.++++++..+++.+.....    .+++.+++++++..+++|-+.-    ++...
T Consensus       185 ------~~~~~~~~~~~~~~~~---~~~a~v~v~~p~~~g~~e~~----~~~~~~~~h~~g~~~~~~~~~~~~~~~l~~p  251 (471)
T d1wyub1         185 ------GPEGEVDLEALKRELG---PHVAALMLTNPNTLGLFERR----ILEISRLCKEAGVQLYYDGANLNAIMGWARP  251 (471)
T ss_dssp             ------CTTSSBCHHHHHHHCS---TTEEEEEECSSCTTSCCCTT----HHHHHHHHHHHTCEEEEEGGGGGGTTTTCCH
T ss_pred             ------cccccccchhhhhhhh---ccccceeeccCCCcccccch----hhhhHHHHHhccccccccccchhhhhhcccc
Confidence                  0001125666655444   67888888777665554444    8899999999999888886532    11111


Q ss_pred             ccCcccccCCCCCcEEEe--ccccc-----CCccchhhheeCHHHHhhcCCC-------------------CCCCCCCCC
Q 017259          178 GRMLASDWEEVRPDMVIL--GKALG-----GGVIPVSAVLADKEVMLCIQPG-------------------EHGSTFGGN  231 (374)
Q Consensus       178 g~~~~~~~~~~~~d~~s~--sK~~~-----~G~~~~G~~~~~~~~~~~~~~~-------------------~~~~~~~~~  231 (374)
                      |.        ...|+++.  .+.+|     ||- .+|++..++++...+-..                   ..--.++.+
T Consensus       252 ~~--------~g~div~vg~~q~~G~P~~~GGP-~~G~~a~~~~~~R~~PGRiV~~~~~~~~~~~~REqhIrRe~actnq  322 (471)
T d1wyub1         252 GD--------MGFDVVHLNLHKTFTVPHGGGGP-GSGPVGVKAHLAPYLPVPLVERGEEGFYLDFDRPKSIGRVRSFYGN  322 (471)
T ss_dssp             HH--------HTCSEEECCTTTTTCCCCTTSCC-CCCCEEECGGGGGGCCSCEEEECSSCEEEECCCTTCCCCSSSTTSC
T ss_pred             Cc--------ccccccccccccccccccccccc-cccceeehhhhhccCCCceecCCCccccccCCCcccccchhhhhhh
Confidence            11        11233322  24443     344 567788888876554311                   001113445


Q ss_pred             HHHHHHHHHHHHHHhhh---cHHHHHHHHHHHHHHHHHHHHHhCCCceeeEEEEeeeEEEEeccCCCchhHHHHHHHHHH
Q 017259          232 PLASAVAIASLDVIRDE---KLAERSAHLGEELRQHLFKIQQQFPNYVKEVRGRGLFNAVEFDKTALPVSAYDICLKMKE  308 (374)
Q Consensus       232 ~~~~~aa~~al~~~~~~---~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~  308 (374)
                      .+...++...+..+..+   ++-+....+..++.++|+..+..   ... ..+...-+.+.++.+.   +..++.+.|++
T Consensus       323 aL~al~A~vYlsllG~~GL~elA~~~~~~A~Yla~~L~~~G~~---~~~-~~~ff~EFvv~~~~~~---~~~~i~k~L~~  395 (471)
T d1wyub1         323 FLALVRAWAYIRTLGLEGLKKAAALAVLNARYLKELLKEKGYR---VPY-DGPSMHEFVAQPPEGF---RALDLAKGLLE  395 (471)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCB---CSS-CSSCCSCEEEBCSTTC---CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCchhHHHHHHHHHHHHHHHHHHHhhcCce---ecc-CcceeeEEeecCCCCC---CHHHHHHHHHH
Confidence            55555555566667665   45566777888888888653222   111 1111111223333332   57789999999


Q ss_pred             CCeEec----c-CCCCEEEEecCCCCCHHHHHHHHHHHHHHHhccCC
Q 017259          309 RGILAK----P-THDTIVRLTPPLSISSNELQEGSKALHDVLELDLP  350 (374)
Q Consensus       309 ~Gi~v~----~-~~~~~lRi~~~~~~~~e~i~~~~~~l~~~~~~~~~  350 (374)
                      +|++-.    | ...+.+.|+++...|++|||.++++|+++++ +.+
T Consensus       396 ~G~~~~~~~~p~~~~~~llv~vTE~~tkedID~lv~aL~~i~~-e~~  441 (471)
T d1wyub1         396 LGFHPPTVYFPLIVKEALMVEPTETEAKETLEAFAEAMGALLK-KPK  441 (471)
T ss_dssp             TTCCCCEESCSTTSTTCEEECCCTTSCHHHHHHHHHHHHHHHT-SCH
T ss_pred             cCCCCCcccCcCCCCCeEEEecCCCCCHHHHHHHHHHHHHHHH-hhH
Confidence            998642    1 1357899999999999999999999999999 764

>d2ctda2 g.37.1.1 (A:61-90) Zinc finger protein 512, ZNF512 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 512, ZNF512
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.65  E-value=0.29  Score=24.01  Aligned_cols=12  Identities=42%  Similarity=1.082  Sum_probs=9.9

Q ss_pred             CCCCccccccCC
Q 017259          362 ATPCHRCGRNLY  373 (374)
Q Consensus       362 ~~~~~~~~~~~~  373 (374)
                      .++|+.|||.|.
T Consensus         2 ~ftc~hcgkqlk   13 (30)
T d2ctda2           2 MFTCHHCGKQLR   13 (30)
T ss_dssp             CCCCSSSCCCCS
T ss_pred             ceechhHHHHHh
Confidence            368999999874