Citrus Sinensis ID: 017264

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccHHHHHHccHHHHccccccccHHHHHcccccEEEEEEEEcccccccEEEEEEccEEEEEEEccccccEEEEcccccccccccccEEEEccEEEEEEccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEccccccccccEEccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEEEEEccccEEEEEEEEEcccHccEEEEEEccEEEEEEEcccccccEEEccccccccccccEEEEEccEEEEEEEccccccHHHHccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHccccHHHHHHHHHHHHccccEEEEccHHHcccccEccccccccEEEEccc
Coil and Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEkgaslapgdsrFTNLIKECEERIAEETgelqkqpletgptnvvstnnvqpatnisstedVETVMDVSNeaamaaparpkyrhefyqkpEEVVVTVFAkgipaknvtvdfgEQILSVsidvpgeeayhfqprlfgkiipakcryeVLSTKVEIRLAkaepiqwsslefskgavvpqrvnppsvsgsprptypsskptrvdWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVesngtvlstnwkevgskkvegsppdgmemkkwey
Flexible Loop (DISEMBL)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRaielepsmskAYWRKATACMKLEEYETAKVAlekgaslapgdsrFTNLIKECEERIAEEtgelqkqpletgptnvvstnnvqpatnisstedvETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPqrvnppsvsgsprptypsskptrvdwDKLEAQVKKeekeekldgdaalNKFFQEIYADADEDTRRAMKKsfvesngtvlstnwkevgskkvegsppdgmemkkwey
Low Complexity Region (SEG)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVkkeekeekLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered region (IsUnstruct)
***********AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK**********FTNLI***************************************************************YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS*****************************************************LNKFFQEIYA*************************************************
Disordered Region (DISOPRED)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL*****************VQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW************************************************************NKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGS**VEGSPPDGMEMKKWE*
Disordered Region (DISEMBL)
********AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV***********************RVDWDKLEAQV*********DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Disordered Region (DISPRO)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETG************************************************RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS*L********************************VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q9SUT5	358	Protein SGT1 homolog B OS	yes	no	0.949	0.991	0.652	1e-130
Q0JL44	367	Protein SGT1 homolog OS=O	yes	no	0.965	0.983	0.660	1e-129
Q9SUR9	350	Protein SGT1 homolog A OS	no	no	0.925	0.988	0.643	1e-123
Q2KIK0	338	Suppressor of G2 allele o	yes	no	0.850	0.940	0.353	3e-50
Q9CX34	336	Suppressor of G2 allele o	yes	no	0.847	0.943	0.331	3e-48
B0BN85	336	Suppressor of G2 allele o	yes	no	0.847	0.943	0.339	4e-48
Q9Y2Z0	365	Suppressor of G2 allele o	no	no	0.893	0.915	0.350	4e-47
Q55ED0	387	Protein SUGT1 homolog OS=	yes	no	0.513	0.496	0.427	8e-38
Q08446	395	Protein SGT1 OS=Saccharom	yes	no	0.518	0.491	0.340	3e-27
O59709	379	Glucose-insensitive trans	yes	no	0.510	0.503	0.359	4e-24

>sp|Q9SUT5|SGT1B_ARATH Protein SGT1 homolog B OS=Arabidopsis thaliana GN=SGT1B PE=1 SV=1

 Score =  466 bits (1198), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 246/377 (65%), Positives = 292/377 (77%), Gaps = 22/377 (5%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA +L +KAKEAF+DD F++A DLYS+AI++ PN A  FADRAQA+IK+ NFTEAV DAN
Sbjct: 1   MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIELEP+++KAY RK TACMKLEEY TAK ALEKGAS+AP + +F  +I EC+ RIAEE
Sbjct: 61  KAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
             +L  QP+     +  +T                T  D       AAPA+P +RHEFYQ
Sbjct: 121 EKDLV-QPMPPSLPSSSTTPLA-------------TEADAPPVPIPAAPAKPMFRHEFYQ 166

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KPEE VVT+FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVL
Sbjct: 167 KPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVL 226

Query: 241 STKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKL 297
           STKVEIRLAKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + DWDKL
Sbjct: 227 STKVEIRLAKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKL 281

Query: 298 EAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSK 357
           EA+VKK+EK+EKLDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+K
Sbjct: 282 EAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTK 341

Query: 358 KVEGSPPDGMEMKKWEY 374
           KVE +PPDGME+KKWEY
Sbjct: 342 KVESTPPDGMELKKWEY 358

Involved in plant innate immunity. Is essential for resistance conferred by multiple R genes recognizing different oomycete pathogen isolates like avirulent H.parasitica (downy mildew). Contributes additively with RAR1 to RPP5-dependent resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Functions as negative regulator of RPS5 accumulation by assisting its degradation. May be involved in heat shock response by associating with HSC70-1 chaperone. Required for the SCF(TIR1)-mediated degradation of Aux/IAA proteins, but maybe not for SCF(TIR1) assembly or binding to its Aux/IAA substrates. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins. Required for the coronatine/jasmonic acid-mediated signal transduction pathway.
Arabidopsis thaliana (taxid: 3702)

>sp|Q0JL44|SGT1_ORYSJ Protein SGT1 homolog OS=Oryza sativa subsp. japonica GN=SGT1 PE=1 SV=1

 Score =  461 bits (1185), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 247/374 (66%), Positives = 298/374 (79%), Gaps = 13/374 (3%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A+DLE KAK AF+DD FELA +LY+QAIE SP +AEL+ADRAQA IKL N+TEAVADAN+
Sbjct: 6   ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+PSM KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE 
Sbjct: 66  AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEEL 125

Query: 122 GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQK 181
            E+  +  E G       + V+   + ++ ++   +++V          +PKYRH+FY  
Sbjct: 126 SEVPVKKAEDGAAAPSVASFVEEKDDAANMDNTPPMVEV----------KPKYRHDFYNS 175

Query: 182 PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS 241
             EVV+T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K RY+VLS
Sbjct: 176 ATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVLS 235

Query: 242 TKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           TKVEIRLAKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DWDKLEA+
Sbjct: 236 TKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWDKLEAE 293

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEKEEKL+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+VGSKKVE
Sbjct: 294 VKKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKVE 353

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGME+KKWEY
Sbjct: 354 GSPPDGMELKKWEY 367

Involved in basal disease resistance to bacterial blight (X.oryzae). May act as positive regulator of basal defense. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SUR9|SGT1A_ARATH Protein SGT1 homolog A OS=Arabidopsis thaliana GN=SGT1A PE=1 SV=1

 Score =  442 bits (1136), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 242/376 (64%), Positives = 291/376 (77%), Gaps = 30/376 (7%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA +L  KAKEAF+DD F++A DLYS+AI++ PN AE FADRAQA IKL++FTEAVADAN
Sbjct: 1   MAKELADKAKEAFVDDDFDVAVDLYSKAIDLDPNCAEFFADRAQAYIKLESFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PS++KAY RK TACMKLEEY TAK ALEKGAS+ P +S+F  LI EC   I EE
Sbjct: 61  KAIELDPSLTKAYLRKGTACMKLEEYRTAKTALEKGASITPSESKFKKLIDECNFLITEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
             +L  QP+   P+ + S+    P +           +DV+  A        KYRHE+YQ
Sbjct: 121 EKDLV-QPV---PSTLPSSVTAPPVSE----------LDVTPTA--------KYRHEYYQ 158

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP KC+YEVL
Sbjct: 159 KPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVL 218

Query: 241 STKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKL 297
           STK+EI LAKA+ I W+SLE  KG AV+P+    P+VS   S RP YPSSK  + DWDKL
Sbjct: 219 STKIEICLAKADIITWASLEHGKGPAVLPK----PNVSSEVSQRPAYPSSKKVK-DWDKL 273

Query: 298 EAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSK 357
           EA+VKK+EK+EKL+GDAALNKFF+EIY +ADED RRAM KSFVESNGTVLSTNW+EVG+K
Sbjct: 274 EAEVKKQEKDEKLEGDAALNKFFREIYQNADEDMRRAMSKSFVESNGTVLSTNWQEVGTK 333

Query: 358 KVEGSPPDGMEMKKWE 373
            +E +PPDGME+KKWE
Sbjct: 334 TIESTPPDGMELKKWE 349

Functions in R gene-mediated resistance, but participates in a lower extent than SGT1B to RPP5-mediated resistance. Not required for RPM1, RPS2, RPS4 and RPS5-mediated resistance. Probably required for SCF-mediated ubiquitination, by coupling HSP90 to SCF complex for ubiquitination of HSP90 client proteins.

Arabidopsis thaliana (taxid: 3702)

>sp|Q2KIK0|SUGT1_BOVIN Suppressor of G2 allele of SKP1 homolog OS=Bos taurus GN=SUGT1 PE=2 SV=1

 Score =  199 bits (506), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 128/362 (35%), Positives = 192/362 (53%), Gaps = 44/362 (12%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A I+   + A +  ++A+E  P+ A  +  RA   I L N+++AVADA +++EL P+ S
Sbjct: 21  DALIEQDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAKKSLELNPNSS 80

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       + Y  A     +G  L   D+  T  IK C+E               
Sbjct: 81  TALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQE--------------- 125

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVF 190
                  + N  QP  + S                     + K ++++YQ   +V++T+ 
Sbjct: 126 -------AQNGSQPEVSASQRTH-----------------QSKIKYDWYQTESQVIITLM 161

Query: 191 AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250
            K +   +V V+F E+ LS  + +P  + Y  + RL   IIP +  ++VLSTK+EI++ K
Sbjct: 162 IKNVQKNDVNVEFSEKELSALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMKK 221

Query: 251 AEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKL 310
            E ++W  LE  +G V     NP       +  YPSS     +WDKL  ++K+EEK EKL
Sbjct: 222 PEAVRWEKLE-GQGDVP----NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKL 276

Query: 311 DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMK 370
           +GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME K
Sbjct: 277 EGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWK 336

Query: 371 KW 372
           K+
Sbjct: 337 KY 338

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Bos taurus (taxid: 9913)

>sp|Q9CX34|SUGT1_MOUSE Suppressor of G2 allele of SKP1 homolog OS=Mus musculus GN=Sugt1 PE=2 SV=3

 Score =  192 bits (488), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/362 (33%), Positives = 189/362 (52%), Gaps = 45/362 (12%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID   + A +  ++A+E +P+ A+ +  RA   I L  + + +AD  +++EL P+  
Sbjct: 20  DALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNC 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       ++Y +A     +G  L   D+ F   IK C+E             ++
Sbjct: 80  TALLRKGICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQE-------------IQ 126

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVF 190
            G  + VS                            +   + K ++++YQ    V++T+ 
Sbjct: 127 NGSESEVSA---------------------------SQRTQSKIKYDWYQTESHVIITLM 159

Query: 191 AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250
            K +   +V V F E+ LS  + +P  E Y  + RL   IIP +  ++VLSTK+EI++ K
Sbjct: 160 IKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMKK 219

Query: 251 AEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKL 310
            E ++W  LE       P++      +   +  YPSS     +WDKL  ++K+EEK EKL
Sbjct: 220 PEAVRWEKLEGQGDEPTPKQF-----TADVKNMYPSSSHYTRNWDKLVGEIKEEEKNEKL 274

Query: 311 DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMK 370
           +GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME K
Sbjct: 275 EGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWK 334

Query: 371 KW 372
           ++
Sbjct: 335 QY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Mus musculus (taxid: 10090)

>sp|B0BN85|SUGT1_RAT Suppressor of G2 allele of SKP1 homolog OS=Rattus norvegicus GN=Sugt1 PE=2 SV=1

 Score =  192 bits (488), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 123/362 (33%), Positives = 190/362 (52%), Gaps = 45/362 (12%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID   + A +  ++A+E +P+ A+ +  RA   I L  + + +AD  +++EL P+ S
Sbjct: 20  DALIDGDPQAALEELTKALEQNPDDAQYYCQRAYCHILLGKYCDGIADVKKSLELNPNNS 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
            A  RK       ++Y +A     +G  L   D+ F   IK C+E               
Sbjct: 80  TALLRKGICEYYEKDYASALETFAEGQKLDGTDTNFDIWIKRCQE--------------- 124

Query: 131 TGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVF 190
                    N  +P                  E + +   + K ++++YQ    V++T+ 
Sbjct: 125 -------IQNGSEP------------------EVSASQRTQSKIKYDWYQTESHVIITLM 159

Query: 191 AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK 250
            K +   +V VDF E+ LS  + +P  E    + RL   IIP +  ++VLSTK+EI++ K
Sbjct: 160 IKNVQKNDVRVDFSEKELSAVVKIPSGEDCSLKLRLLHPIIPEQSTFKVLSTKIEIKMKK 219

Query: 251 AEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKL 310
            E ++W  LE  +G V      P   +   +  YPSS     +WDKL  ++K+EEK EKL
Sbjct: 220 PEAVRWEKLE-GQGDVPA----PKQFTADVKNMYPSSSHYTRNWDKLVGEIKEEEKNEKL 274

Query: 311 DGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMK 370
           +GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME K
Sbjct: 275 EGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWK 334

Query: 371 KW 372
           ++
Sbjct: 335 QY 336

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Rattus norvegicus (taxid: 10116)

>sp|Q9Y2Z0|SUGT1_HUMAN Suppressor of G2 allele of SKP1 homolog OS=Homo sapiens GN=SUGT1 PE=1 SV=3

 Score =  189 bits (479), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 131/374 (35%), Positives = 195/374 (52%), Gaps = 40/374 (10%)

Query: 11  EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
           +A ID+  + A +  ++A+E  P+ A+ +  RA   I L N+  AVADA +++EL P+ S
Sbjct: 20  DALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNS 79

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL------ 124
            A  RK       + Y  A     +G  L          I+    R+ +   +L      
Sbjct: 80  TAMLRKGICEYHEKNYAAALETFTEGQKLD---------IETGFHRVGQAGLQLLTSSDP 130

Query: 125 -----QKQPLETGPTNV-VSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEF 178
                Q   +     N  V     Q A N S +E                  + K ++++
Sbjct: 131 PALDSQSAGITGADANFSVWIKRCQEAQNGSESE--------------VWTHQSKIKYDW 176

Query: 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 238
           YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP +  ++
Sbjct: 177 YQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFK 236

Query: 239 VLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLE 298
           VLSTK+EI+L K E ++W  LE  +G V      P       +  YPSS P   +WDKL 
Sbjct: 237 VLSTKIEIKLKKPEAVRWEKLE-GQGDVP----TPKQFVADVKNLYPSSSPYTRNWDKLV 291

Query: 299 AQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKK 358
            ++K+EEK EKL+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +K
Sbjct: 292 GEIKEEEKNEKLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRK 351

Query: 359 VEGSPPDGMEMKKW 372
           VE +PPD ME KK+
Sbjct: 352 VEINPPDDMEWKKY 365

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Homo sapiens (taxid: 9606)

>sp|Q55ED0|SUGT1_DICDI Protein SUGT1 homolog OS=Dictyostelium discoideum GN=sugt1 PE=2 SV=1

 Score =  158 bits (399), Expect = 8e-38,   Method: Compositional matrix adjust.
 Identities = 86/201 (42%), Positives = 120/201 (59%), Gaps = 9/201 (4%)

Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           K RHE+YQ    VV+T+FAK + A N  ++   + +++S  +     + F+  LF  I+ 
Sbjct: 195 KVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEFLFEMDLFDPIVD 254

Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRV 292
                   STKVEI++ K+  I+W +LEF+  +     ++  S S    P  PS   ++ 
Sbjct: 255 KDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLMDQISSS----PAVPSPYASKK 310

Query: 293 DWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWK 352
           DWDKL       E EEKL+GD ALNK F++I++   ED +RAM KSF ES GTVLSTNW 
Sbjct: 311 DWDKLP-----NEPEEKLEGDQALNKIFRDIFSKGSEDQQRAMMKSFTESGGTVLSTNWD 365

Query: 353 EVGSKKVEGSPPDGMEMKKWE 373
           EVGSKKV G PP G+E K++E
Sbjct: 366 EVGSKKVVGEPPKGLEFKQYE 386

May play a role in ubiquitination and subsequent proteasomal degradation of target proteins.

Dictyostelium discoideum (taxid: 44689)

>sp|Q08446|SGT1_YEAST Protein SGT1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SGT1 PE=1 SV=1

 Score =  122 bits (307), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 75/220 (34%), Positives = 115/220 (52%), Gaps = 26/220 (11%)

Query: 172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDF-----GEQILSVSIDVP--GEEAYHFQP 224
           PK++ ++YQ    V +++F   +P     V+        + LS+S  VP  G E + +  
Sbjct: 183 PKFKIDWYQSSTSVTISLFTVNLPESKEQVNIYISPNDRRTLSISYQVPKSGSE-FQYNA 241

Query: 225 RLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF------------SKGAVVPQRVN 272
           +L  ++ P     ++   K+EI L+K +  QW  LE              K +    R+ 
Sbjct: 242 KLSHEVDPKAVSLKIFPKKLEITLSKIDSTQWKKLEEDILTESSRLSDEGKNSDSATRLL 301

Query: 273 PPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTR 332
               +   R +YPSS   ++DW KL+  + +E  EE    D+    FFQ++YA AD DT+
Sbjct: 302 SAETASKERLSYPSSSKKKIDWSKLD--IDEEADEEAGSADS----FFQKLYAGADPDTK 355

Query: 333 RAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372
           RAM KSF+ESNGT LST+W++V    V+ SPP+GME K W
Sbjct: 356 RAMMKSFIESNGTALSTDWEDVSKGTVKTSPPEGMEPKHW 395

Involved in ubiquitination and subsequent proteasomal degradation of target proteins. Required for both entry into S phase and kinetochore function. Also involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

>sp|O59709|GIT7_SCHPO Glucose-insensitive transcription protein 7 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=git7 PE=4 SV=2

 Score =  112 bits (281), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 74/206 (35%), Positives = 110/206 (53%), Gaps = 15/206 (7%)

Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKII 231
           + R+++ Q    + + ++AK +  ++V++   +  L + I +     +      L+ +I+
Sbjct: 183 RIRYDWSQTSFSLNIDIYAKKVKDEDVSLLMEKNTLKIEIKLEDGSIFSLVLDPLYEEIV 242

Query: 232 PAKCRYEVLSTKVEIRLAK-AEPIQWSSLEFSKGA----VVPQRVNPPSVSGSPRPTYPS 286
           P K  +++ S+KVEI L K    I+W +L  S       V  +  N  S SG+       
Sbjct: 243 PEKSSFKLFSSKVEITLIKKVSEIKWEALVKSPANNSVNVYAKDSNHSSASGN------- 295

Query: 287 SKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTV 346
           +K    DWD L      EE E    G+AAL   FQ +Y +AD+DTRRAM KS+ ESNGT 
Sbjct: 296 TKNKAKDWDSLAKLADLEEDEPT--GEAALANLFQNLYKNADDDTRRAMMKSYTESNGTA 353

Query: 347 LSTNWKEVGSKKVEGSPPDGMEMKKW 372
           LSTNWK+V SK  E  PP GME KK+
Sbjct: 354 LSTNWKDVKSKTFETKPPQGMEPKKF 379

Involved in cyclic AMP (cAMP) pathway, possibly by participating in the assembly or the conformational activation of specific multiprotein complexes.

Schizosaccharomyces pombe (strain 972 / ATCC 24843) (taxid: 284812)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
390985902	361	SGT1 [Vitis pseudoreticulata]	0.965	1.0	0.740	1e-153
225464635	361	PREDICTED: protein SGT1 homolog [Vitis v	0.965	1.0	0.737	1e-152
255545142	361	chaperone binding protein, putative [Ric	0.965	1.0	0.729	1e-150
51511450	370	SGT1 [Solanum tuberosum]	0.983	0.994	0.705	1e-149
62467587	370	Sgt1b [Capsicum annuum]	0.983	0.994	0.711	1e-149
388509998	358	unknown [Lotus japonicus]	0.957	1.0	0.700	1e-147
356559728	359	PREDICTED: protein SGT1 homolog B-like [	0.959	1.0	0.705	1e-147
351725565	359	SGT1-2 [Glycine max] gi|208964720|gb|ACI	0.954	0.994	0.696	1e-145
29468339	370	SGT1 [Nicotiana benthamiana]	0.983	0.994	0.721	1e-145
238915472	360	SGT1 [Malus hupehensis]	0.962	1.0	0.719	1e-144

>gi|390985902|gb|AFM35697.1| SGT1 [Vitis pseudoreticulata]

 Score =  547 bits (1409), Expect = e-153,   Method: Compositional matrix adjust.
 Identities = 277/374 (74%), Positives = 308/374 (82%), Gaps = 13/374 (3%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYNQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAIEL+P MSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEERIAEE
Sbjct: 61  RAIELDPLMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           T  L KQ +   P  V S   V  A  +             ++  M   ++PKYRHE+YQ
Sbjct: 121 TDGLPKQSVVQAPEAVESPETVVAAEKV-------------HQVPMVTASKPKYRHEYYQ 167

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KP+EVVVT+FAKGIP +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVL
Sbjct: 168 KPQEVVVTIFAKGIPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVL 227

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STK+EIRLAKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQ
Sbjct: 228 STKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQ 287

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEKEEKLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVE
Sbjct: 288 VKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVE 347

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGMEMKKWEY
Sbjct: 348 GSPPDGMEMKKWEY 361

Source: Vitis pseudoreticulata

Species: Vitis pseudoreticulata

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225464635|ref|XP_002276170.1| PREDICTED: protein SGT1 homolog [Vitis vinifera] gi|302143763|emb|CBI22624.3| unnamed protein product [Vitis vinifera]

 Score =  544 bits (1402), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 276/374 (73%), Positives = 308/374 (82%), Gaps = 13/374 (3%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +A +AFIDD+FELA DLY+QAIEI+PN AEL+ +R+QA+IKL NFTEAVADAN
Sbjct: 1   MASDLEIRAGKAFIDDHFELAVDLYTQAIEINPNHAELYVERSQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAIEL+PSMSKA+ RK TACMKLEEY+TAK A E GASLAPGDSRFTNLIKECEE IAEE
Sbjct: 61  RAIELDPSMSKAFLRKGTACMKLEEYQTAKAAFETGASLAPGDSRFTNLIKECEECIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           T  L KQ +   P  V S   V  A  +             ++  M   ++PKYRHE+YQ
Sbjct: 121 TDGLPKQSVVPAPEAVESPETVVAAEEV-------------HQVPMVTASKPKYRHEYYQ 167

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KP+EVVVT+FAKG+P +NV VDFGEQILSVSIDVPG+ AYHFQPRLFGKIIP KCRYEVL
Sbjct: 168 KPQEVVVTIFAKGVPDENVVVDFGEQILSVSIDVPGDVAYHFQPRLFGKIIPDKCRYEVL 227

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STK+EIRLAKAE I W+SLEFSK   VPQR+N  +   S RPTYPSSK   VDWDKLEAQ
Sbjct: 228 STKIEIRLAKAEEIHWTSLEFSKENTVPQRINVSTSVASQRPTYPSSKTRMVDWDKLEAQ 287

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEKEEKLDGDAALNKFF++IY DADEDTRRAM+KSFVESNGTVLSTNWKEVGSKKVE
Sbjct: 288 VKKEEKEEKLDGDAALNKFFRDIYKDADEDTRRAMQKSFVESNGTVLSTNWKEVGSKKVE 347

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGMEMKKWEY
Sbjct: 348 GSPPDGMEMKKWEY 361

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255545142|ref|XP_002513632.1| chaperone binding protein, putative [Ricinus communis] gi|223547540|gb|EEF49035.1| chaperone binding protein, putative [Ricinus communis]

 Score =  536 bits (1380), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 273/374 (72%), Positives = 311/374 (83%), Gaps = 13/374 (3%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE+KAKEAF+DD+F LA DL +QAI + PNSAEL+ADRAQA+IKL+N TEAVADAN
Sbjct: 1   MASDLERKAKEAFVDDHFALAADLLTQAIGLDPNSAELYADRAQANIKLRNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           RAI+L+PSM+KAY RK TAC++LEEY+TAK ALE GASLAP D RFTNLIKECEE IA+E
Sbjct: 61  RAIQLDPSMAKAYLRKGTACIRLEEYQTAKAALEIGASLAPEDPRFTNLIKECEECIADE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           T  L K   E  P NVV   +VQP            V D  ++  +  P++PKYRHEFYQ
Sbjct: 121 TDNLPKHASE-APENVVPMEDVQP------------VNDHISKVPIVTPSKPKYRHEFYQ 167

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KPEEVVVT+FAKG+PA +V VDFGEQILSVSI+VPGE+AYHFQPRLFGKIIPAKCRY VL
Sbjct: 168 KPEEVVVTIFAKGLPASSVAVDFGEQILSVSINVPGEDAYHFQPRLFGKIIPAKCRYNVL 227

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STKVE+ L KA+PI W+SLEFS    V QR N  S +GS RP+YPSSKP R DWD+LEA+
Sbjct: 228 STKVEVHLVKADPIHWTSLEFSNEITVLQRANVSSGTGSHRPSYPSSKPKRTDWDRLEAE 287

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE
Sbjct: 288 VKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 347

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGMEM+KWEY
Sbjct: 348 GSPPDGMEMRKWEY 361

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|51511450|gb|AAU04979.1| SGT1 [Solanum tuberosum]

 Score =  534 bits (1376), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 264/374 (70%), Positives = 309/374 (82%), Gaps = 6/374 (1%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAITMSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+P+MSKAY R+  ACMKLEEY+TAK ALE GASLAPG+ RFT LIKEC+ERIAEE
Sbjct: 61  KAIELDPTMSKAYLRRGLACMKLEEYQTAKTALETGASLAPGELRFTKLIKECDERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFY 179
            GEL    ++    +VV+    + + N++ + ED +  +   N++   + A+PKYRHEFY
Sbjct: 121 AGELPNLSVDKTSASVVAPPASELSDNVAIAPEDAQPTV---NQSHQGSAAKPKYRHEFY 177

Query: 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEV 239
           QKPEEVVVT+FAKGIPAKNV +DFGEQILSVSIDVPGEE Y FQPRLFGKI PAKCRY+V
Sbjct: 178 QKPEEVVVTIFAKGIPAKNVVIDFGEQILSVSIDVPGEETYSFQPRLFGKITPAKCRYDV 237

Query: 240 LSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 299
           +STK+EIRLAKAE + W+SLE++   VV QR  P   S +PRP+YPSSK   VDWDKLEA
Sbjct: 238 MSTKIEIRLAKAELLHWTSLEYTTEPVVVQR--PIVSSAAPRPSYPSSKLRNVDWDKLEA 295

Query: 300 QVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKV 359
            VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFV SNGTVLSTNWKEVG+KKV
Sbjct: 296 AVKKEEKDEKLDGDAALNKFFRDIYQDADEDTRRAMMKSFVGSNGTVLSTNWKEVGTKKV 355

Query: 360 EGSPPDGMEMKKWE 373
           EGSPPDGME+KKWE
Sbjct: 356 EGSPPDGMELKKWE 369

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|62467587|gb|AAX83943.1| Sgt1b [Capsicum annuum]

 Score =  533 bits (1373), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 266/374 (71%), Positives = 312/374 (83%), Gaps = 6/374 (1%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI +SP + ELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAISLSPKNPELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+P MSKAY RK  ACMKLEEY+TAK ALE GASLAPG+SRFT L+KEC+E IAEE
Sbjct: 61  KAIELDPYMSKAYLRKGLACMKLEEYQTAKAALETGASLAPGESRFTKLMKECDESIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFY 179
            GEL    LE    N V+++  + + N++ +  D ++ + +S++ +    A+PKYRHEFY
Sbjct: 121 AGELPNISLEKPSANAVASSASELSDNVAIAPRDPQSTVTLSHQESA---AKPKYRHEFY 177

Query: 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEV 239
           QKPEEVVVT+FAKGIPAKNV VDFGEQILSVSID+PG E Y FQPRLFGKI PAKCRYEV
Sbjct: 178 QKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDLPGGETYSFQPRLFGKITPAKCRYEV 237

Query: 240 LSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 299
           +STK+EIRLAKAEP+ W+SL++++  VV  R  P   S +PRP+YPSSK   VDWDKLEA
Sbjct: 238 MSTKIEIRLAKAEPLHWTSLDYTREPVVIHR--PVVSSAAPRPSYPSSKLRNVDWDKLEA 295

Query: 300 QVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKV 359
           QVKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFVESNGTVLSTNWKEVG+KKV
Sbjct: 296 QVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKV 355

Query: 360 EGSPPDGMEMKKWE 373
           EGSPPDGME+KKWE
Sbjct: 356 EGSPPDGMELKKWE 369

Source: Capsicum annuum

Species: Capsicum annuum

Genus: Capsicum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388509998|gb|AFK43065.1| unknown [Lotus japonicus]

 Score =  528 bits (1361), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 262/374 (70%), Positives = 306/374 (81%), Gaps = 16/374 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA +L +QAI++ P  AEL+ADRAQA+IKL NFTEA+ADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVELLTQAIDVDPKHAELYADRAQANIKLNNFTEAIADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL PS+SKAY RK TACMKLEEY+TAK ALE GA+L+   SRF NLIKEC++ IAEE
Sbjct: 61  KAIELNPSLSKAYLRKGTACMKLEEYQTAKTALEMGATLSTDKSRFLNLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           +  +  Q  E   T  VS  +VQP  +++             E  + A A+PKYRHEFYQ
Sbjct: 121 SYPMPIQ--EKATTLDVSPKDVQPDKDLT-------------EQPIVAVAKPKYRHEFYQ 165

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KP+EVVVT+FAKG   +N+TVDFGEQILSVSI+VPGE+AY FQPRLFGKII ++CRYEVL
Sbjct: 166 KPDEVVVTIFAKGASKENITVDFGEQILSVSINVPGEDAYTFQPRLFGKIISSRCRYEVL 225

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STK+EIRL KAEPI W+SLEF++   V QR N  SV GS RPTYPSSKP + DWDKLEAQ
Sbjct: 226 STKIEIRLGKAEPIHWNSLEFTREVAVAQRANISSVIGSQRPTYPSSKPKK-DWDKLEAQ 284

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KKVE
Sbjct: 285 VKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKKVE 344

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGME++KWEY
Sbjct: 345 GSPPDGMELRKWEY 358

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559728|ref|XP_003548149.1| PREDICTED: protein SGT1 homolog B-like [Glycine max]

 Score =  527 bits (1358), Expect = e-147,   Method: Compositional matrix adjust.
 Identities = 264/374 (70%), Positives = 308/374 (82%), Gaps = 15/374 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAELYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL  S+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE
Sbjct: 61  KAIELNSSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           +  +   P+    T   +T +  P       +DV+   D+  +  +A   +PKYRHEFYQ
Sbjct: 121 SYTI---PIIEEKT---TTQDATP-------KDVQQQDDLLEKPTVAV-TKPKYRHEFYQ 166

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KP+++VVT+FAK IP +++TVDFGEQILSVSI+VPGE+ Y FQPRLFGKI+P+ CRYEVL
Sbjct: 167 KPDQLVVTIFAKKIPKESITVDFGEQILSVSINVPGEDVYAFQPRLFGKIVPSNCRYEVL 226

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STK+EIRLAKAEPI W+SLEF+   VVPQRVN  SV+GS RP+YPSSK TR DWDK+EAQ
Sbjct: 227 STKIEIRLAKAEPIHWTSLEFTTDIVVPQRVNASSVTGSQRPSYPSSKQTR-DWDKIEAQ 285

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE
Sbjct: 286 VKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 345

Query: 361 GSPPDGMEMKKWEY 374
           GS PDGME+KKWEY
Sbjct: 346 GSAPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351725565|ref|NP_001236585.1| SGT1-2 [Glycine max] gi|208964720|gb|ACI31550.1| SGT1-2 [Glycine max]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 262/376 (69%), Positives = 305/376 (81%), Gaps = 19/376 (5%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE KAKEAF++D+FELA DL SQAI + PN AE +ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MASDLEAKAKEAFVEDHFELAVDLLSQAIHLEPNKAEFYADRAQANIKLNNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL PS+ KAY RK TACMKLEEYETAK ALE GASL+P +SRF  LIKEC++ IAEE
Sbjct: 61  KAIELNPSLPKAYLRKGTACMKLEEYETAKAALEVGASLSPDNSRFATLIKECDKLIAEE 120

Query: 121 TGELQKQPLETGPT--NVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEF 178
           +         T P      +T +V P       +DV+   D+  +  +    +PKYRHEF
Sbjct: 121 SY--------TPPIIEEKATTEDVTP-------KDVQQQDDLLEKPTVTV-TKPKYRHEF 164

Query: 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 238
           YQK ++VVVT+FAK IP +++TVDFGEQILSVSI+V GE+ Y FQPRLFGKIIP+ C+YE
Sbjct: 165 YQKHDQVVVTIFAKKIPKESITVDFGEQILSVSINVTGEDTYVFQPRLFGKIIPSNCQYE 224

Query: 239 VLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLE 298
           VLSTK+EIRLAKAEPI W+SLEF++  VV QRVN  SV+GS RP+YPSSK TR DWDK+E
Sbjct: 225 VLSTKIEIRLAKAEPIHWTSLEFTRDIVVQQRVNASSVTGSQRPSYPSSKQTR-DWDKIE 283

Query: 299 AQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKK 358
           AQVKKEEK+EKLDGDAALNKFF+EIY DADEDTRRAMKKSFVESNGTVLSTNWKEVG+KK
Sbjct: 284 AQVKKEEKDEKLDGDAALNKFFREIYQDADEDTRRAMKKSFVESNGTVLSTNWKEVGTKK 343

Query: 359 VEGSPPDGMEMKKWEY 374
           VEGSPPDGME+KKWEY
Sbjct: 344 VEGSPPDGMELKKWEY 359

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|29468339|gb|AAO85509.1| SGT1 [Nicotiana benthamiana]

 Score =  520 bits (1338), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 270/374 (72%), Positives = 315/374 (84%), Gaps = 6/374 (1%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE +AKEAFIDD+FELA DLY+QAI ++P +AELFADRAQA+IKL  FTEAV DAN
Sbjct: 1   MASDLETRAKEAFIDDHFELAVDLYTQAIAMTPKNAELFADRAQANIKLNYFTEAVVDAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PSMSKAY RK  ACMKLEEY+TAK ALE GASLAP +SRFT LIKEC+ERIAEE
Sbjct: 61  KAIELDPSMSKAYLRKGLACMKLEEYQTAKAALETGASLAPAESRFTKLIKECDERIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNIS-STEDVETVMDVSNEAAMAAPARPKYRHEFY 179
            GEL  Q ++    NVV+    +   N++ + +D +  +++S + +    ARPKYRHEFY
Sbjct: 121 AGELPNQSVDKTSGNVVAPPASESLDNVAVAPKDAQPTVNLSYQGSA---ARPKYRHEFY 177

Query: 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEV 239
           QKPEEVVVT+FAKGIPAKNV VDFGEQILSVSIDVPG+E Y FQPRLFGKI PAKCRYEV
Sbjct: 178 QKPEEVVVTIFAKGIPAKNVVVDFGEQILSVSIDVPGDETYSFQPRLFGKITPAKCRYEV 237

Query: 240 LSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 299
           +STK+EIRLAKAEP+ W+SLE+++ + V QR  P   S +PRP+YPSSK   VDWDKLEA
Sbjct: 238 MSTKIEIRLAKAEPLHWTSLEYTRASAVVQR--PNVSSDAPRPSYPSSKLRHVDWDKLEA 295

Query: 300 QVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKV 359
           +VKKEEK+EKLDGDAALNKFF++IY DADEDTRRAM KSFVESNGTVLSTNWKEVG+KKV
Sbjct: 296 EVKKEEKDEKLDGDAALNKFFRDIYKDADEDTRRAMMKSFVESNGTVLSTNWKEVGTKKV 355

Query: 360 EGSPPDGMEMKKWE 373
           EGSPPDGME+KKWE
Sbjct: 356 EGSPPDGMELKKWE 369

Source: Nicotiana benthamiana

Species: Nicotiana benthamiana

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|238915472|gb|ACR78249.1| SGT1 [Malus hupehensis]

 Score =  517 bits (1331), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 269/374 (71%), Positives = 315/374 (84%), Gaps = 14/374 (3%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA+DLE++AKE F+DD+FELA DLY+QAI+++P +AEL++DRAQA+IK  N TEAVADAN
Sbjct: 1   MASDLEQRAKEVFMDDHFELAVDLYTQAIDLNPQNAELYSDRAQANIKAGNLTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIE +PS+ KAY+RK  AC+KLEEY+TAK ALE GA LAP ++RF +LIKEC+E+IAEE
Sbjct: 61  KAIEFDPSLYKAYFRKGIACIKLEEYQTAKAALETGAPLAPQETRFASLIKECDEKIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
           T  L   P+E        T NV PA      +DVE V + SN+  +A   +PKYRHEFYQ
Sbjct: 121 TIVLPTPPVEKD-----ITENVIPA------KDVEPVSEPSNQVTVAT-VKPKYRHEFYQ 168

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KPEEVVVT+FAKGIPAK+V VDFGEQILSVSIDV GE+ +HFQPRLFGKIIP KCR++VL
Sbjct: 169 KPEEVVVTIFAKGIPAKDVHVDFGEQILSVSIDVAGEDTFHFQPRLFGKIIPEKCRFDVL 228

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STKVEIRLAKAEPIQW+SLEFSK ++VP R + P V G+PRP+YPSSKP R DWDKLEAQ
Sbjct: 229 STKVEIRLAKAEPIQWASLEFSKDSLVPFRGSGP-VVGAPRPSYPSSKPKR-DWDKLEAQ 286

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEKEEKLDGDAALNKFFQ+IY DADEDTRRAM+KSFVESNGTVLSTN KEVG+KKVE
Sbjct: 287 VKKEEKEEKLDGDAALNKFFQDIYKDADEDTRRAMRKSFVESNGTVLSTNXKEVGNKKVE 346

Query: 361 GSPPDGMEMKKWEY 374
           GS PDGMEMKKWE+
Sbjct: 347 GSAPDGMEMKKWEF 360

Source: Malus hupehensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
UNIPROTKB|Q0JL44	367	SGT1 "Protein SGT1 homolog" [O	0.962	0.980	0.645	8.3e-122
TAIR|locus:2128278	358	SGT1B [Arabidopsis thaliana (t	0.949	0.991	0.647	4.6e-121
DICTYBASE|DDB_G0269292	387	sugt1 "SGS domain-contantaing	0.949	0.917	0.352	1.5e-51
UNIPROTKB|Q9Y2Z0	365	SUGT1 "Suppressor of G2 allele	0.919	0.942	0.348	6e-48
UNIPROTKB|Q2KIK0	338	SUGT1 "Suppressor of G2 allele	0.855	0.946	0.342	2.2e-43
MGI|MGI:1915205	336	Sugt1 "SGT1, suppressor of G2	0.818	0.910	0.322	6.6e-42
RGD|1307550	336	Sugt1 "SGT1, suppressor of G2	0.812	0.904	0.333	4.6e-41
CGD|CAL0004941	413	SGT1 [Candida albicans (taxid:	0.609	0.552	0.351	4.6e-40
UNIPROTKB|Q59X42	413	CaO19.11570 "Putative uncharac	0.609	0.552	0.351	4.6e-40
ZFIN|ZDB-GENE-041114-56	322	sgut1 "SGT1, suppressor of G2	0.804	0.934	0.350	9.9e-39

UNIPROTKB|Q0JL44 SGT1 "Protein SGT1 homolog" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 1198 (426.8 bits), Expect = 8.3e-122, P = 8.3e-122
 Identities = 242/375 (64%), Positives = 290/375 (77%)

Query:     2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
             A+DLE KAK AF+DD FELA +LY+QAIE SP +AEL+ADRAQA IKL N+TEAVADAN+
Sbjct:     6 ASDLESKAKAAFVDDDFELAAELYTQAIEASPATAELYADRAQAHIKLGNYTEAVADANK 65

Query:    62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
             AIEL+PSM KAY RK  AC++LEEY+TAK ALE G S A GDSRFT L+KEC+ERIAEE 
Sbjct:    66 AIELDPSMHKAYLRKGAACIRLEEYQTAKAALELGYSFASGDSRFTRLMKECDERIAEEL 125

Query:   122 GELQKQPLETGPTNVVSTNNVQPATNISS-TEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
              E+  +  E G            A +++S  E+ +   ++ N   M    +PKYRH+FY 
Sbjct:   126 SEVPVKKAEDGAA----------APSVASFVEEKDDAANMDNTPPMVE-VKPKYRHDFYN 174

Query:   181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
                EVV+T+FAKG+PA+NV VDFGEQ+LSVSI+VPGEE YHFQPRLF KIIP K RY+VL
Sbjct:   175 SATEVVLTIFAKGVPAENVVVDFGEQMLSVSIEVPGEEPYHFQPRLFSKIIPEKSRYQVL 234

Query:   241 STKVEIRLAKAEPIQWSSLEFSKGA-VVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA 299
             STKVEIRLAKAE I W+SL++ K    VPQ++ PP+ S   RP+YPSSK ++ DWDKLEA
Sbjct:   235 STKVEIRLAKAEQITWTSLDYDKKPKAVPQKIIPPAESAQ-RPSYPSSK-SKKDWDKLEA 292

Query:   300 QVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKV 359
             +V        L+GDAALNKFF++IY+DADED RRAM KSFVESNGTVLSTNWK+VGSKKV
Sbjct:   293 EVKKEEKEEKLEGDAALNKFFRDIYSDADEDMRRAMMKSFVESNGTVLSTNWKDVGSKKV 352

Query:   360 EGSPPDGMEMKKWEY 374
             EGSPPDGME+KKWEY
Sbjct:   353 EGSPPDGMELKKWEY 367

GO:0005515 "protein binding" evidence=IPI

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0042742 "defense response to bacterium" evidence=IMP

GO:0050832 "defense response to fungus" evidence=IMP

TAIR|locus:2128278 SGT1B [Arabidopsis thaliana (taxid:3702)]

 Score = 1191 (424.3 bits), Expect = 4.6e-121, P = 4.6e-121
 Identities = 244/377 (64%), Positives = 289/377 (76%)

Query:     1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
             MA +L +KAKEAF+DD F++A DLYS+AI++ PN A  FADRAQA+IK+ NFTEAV DAN
Sbjct:     1 MAKELAEKAKEAFLDDDFDVAVDLYSKAIDLDPNCAAFFADRAQANIKIDNFTEAVVDAN 60

Query:    61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
             +AIELEP+++KAY RK TACMKLEEY TAK ALEKGAS+AP + +F  +I EC+ RIAEE
Sbjct:    61 KAIELEPTLAKAYLRKGTACMKLEEYSTAKAALEKGASVAPNEPKFKKMIDECDLRIAEE 120

Query:   121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
               +L  QP+   P ++ S          SST  + T  D       AAPA+P +RHEFYQ
Sbjct:   121 EKDLV-QPM---PPSLPS----------SSTTPLATEADAPPVPIPAAPAKPMFRHEFYQ 166

Query:   181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
             KPEE VVT+FAK +P +NVTV+FGEQILSV IDV GEEAYH QPRLFGKIIP KCR+EVL
Sbjct:   167 KPEEAVVTIFAKKVPKENVTVEFGEQILSVVIDVAGEEAYHLQPRLFGKIIPEKCRFEVL 226

Query:   241 STKVEIRLAKAEPIQWSSLEFSKG-AVVPQRVNPPSVSG--SPRPTYPSSKPTRVDWDKL 297
             STKVEIRLAKAE I W+SLE+ KG +V+P+    P+VS   S RP YPSSKP + DWDKL
Sbjct:   227 STKVEIRLAKAEIITWASLEYGKGQSVLPK----PNVSSALSQRPVYPSSKPAK-DWDKL 281

Query:   298 EAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSK 357
             EA+V        LDGDAA+NKFF +IY+ ADED RRAM KSF ESNGTVLSTNWKEVG+K
Sbjct:   282 EAEVKKQEKDEKLDGDAAMNKFFSDIYSSADEDMRRAMNKSFAESNGTVLSTNWKEVGTK 341

Query:   358 KVEGSPPDGMEMKKWEY 374
             KVE +PPDGME+KKWEY
Sbjct:   342 KVESTPPDGMELKKWEY 358

GO:0005634 "nucleus" evidence=ISM;IDA

GO:0005515 "protein binding" evidence=IPI

GO:0050832 "defense response to fungus" evidence=RCA;IMP

GO:2000072 "regulation of defense response to fungus, incompatible interaction" evidence=IMP

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=RCA;IMP

GO:0009734 "auxin mediated signaling pathway" evidence=IMP

GO:0009867 "jasmonic acid mediated signaling pathway" evidence=RCA;IMP

GO:0019005 "SCF ubiquitin ligase complex" evidence=TAS

GO:0030163 "protein catabolic process" evidence=IMP

GO:0005737 "cytoplasm" evidence=IDA

GO:0009408 "response to heat" evidence=IMP

GO:0005829 "cytosol" evidence=IDA

GO:0010187 "negative regulation of seed germination" evidence=IMP

GO:0000165 "MAPK cascade" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0009595 "detection of biotic stimulus" evidence=RCA

GO:0009697 "salicylic acid biosynthetic process" evidence=RCA

GO:0009853 "photorespiration" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0009863 "salicylic acid mediated signaling pathway" evidence=RCA

GO:0010200 "response to chitin" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0031348 "negative regulation of defense response" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043900 "regulation of multi-organism process" evidence=RCA

GO:0051707 "response to other organism" evidence=RCA

GO:0051788 "response to misfolded protein" evidence=RCA

GO:0080129 "proteasome core complex assembly" evidence=RCA

DICTYBASE|DDB_G0269292 sugt1 "SGS domain-contantaing protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 535 (193.4 bits), Expect = 1.5e-51, P = 1.5e-51
 Identities = 139/394 (35%), Positives = 206/394 (52%)

Query:     7 KKAKEAFIDDYFELAYDLYSQA-IEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
             K+    F+D+ ++ A   Y +A +E+S N+AE F  R+Q   KL N  EA++D N +I+L
Sbjct:     5 KEGNSYFVDEQYDEALKCYDKACLELS-NNAEAFFKRSQCHSKLSNLKEALSDINTSIKL 63

Query:    66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE----- 120
             + + SK Y +K   C +LEE++TA    EKG S+   +S F   I++ +  I        
Sbjct:    64 DSNNSKYYLKKGQLCFELEEFDTALKTFEKGQSIDSENSSFKTWIRKSKAEIQSNPTTTT 123

Query:   121 --------TGELQKQPLET--GPTNVVSTNNVQPATNISSTEDVE---------TVMDVS 161
                     T     QP+ T   PT + +T+N    TN ++  +           T  D S
Sbjct:   124 TTTPTPTPTPTPAPQPVTTTTNPTPIPTTSNTTTTTNNNNNNNNNNNNNNNNNNTTTD-S 182

Query:   162 NEAAMAAPARP-KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAY 220
                 +  P+   K RHE+YQ    VV+T+FAK + A N  ++   + +++S  +     +
Sbjct:   183 TTTKLPIPSSGNKVRHEWYQTETHVVLTIFAKFVTASNSKINLTSKSVNISFPLANGSEF 242

Query:   221 HFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFS-KGAVVPQRVNPPSVSGS 279
              F+  LF  I+         STKVEI++ K+  I+W +LEF+ K   V        +S S
Sbjct:   243 LFEMDLFDPIVDKDSTIHYYSTKVEIKMKKSRAIKWDTLEFTDKSGPVGLM---DQISSS 299

Query:   280 PRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSF 339
             P    PS   ++ DWDKL  +         L+GD ALNK F++I++   ED +RAM KSF
Sbjct:   300 P--AVPSPYASKKDWDKLPNEPEEK-----LEGDQALNKIFRDIFSKGSEDQQRAMMKSF 352

Query:   340 VESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWE 373
              ES GTVLSTNW EVGSKKV G PP G+E K++E
Sbjct:   353 TESGGTVLSTNWDEVGSKKVVGEPPKGLEFKQYE 386

GO:0003674 "molecular_function" evidence=ND

GO:0016567 "protein ubiquitination" evidence=ISS

GO:0000151 "ubiquitin ligase complex" evidence=ISS

UNIPROTKB|Q9Y2Z0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Homo sapiens (taxid:9606)]

 Score = 501 (181.4 bits), Expect = 6.0e-48, P = 6.0e-48
 Identities = 127/364 (34%), Positives = 194/364 (53%)

Query:    11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS 70
             +A ID+  + A +  ++A+E  P+ A+ +  RA   I L N+  AVADA +++EL P+ S
Sbjct:    20 DALIDEDPQAALEELTKALEQKPDDAQYYCQRAYCHILLGNYCVAVADAKKSLELNPNNS 79

Query:    71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLE 130
              A  RK   C    EY     A    A+L      FT   K   E      G+   Q L 
Sbjct:    80 TAMLRKGI-C----EYHEKNYA----AAL----ETFTEGQKLDIETGFHRVGQAGLQLLT 126

Query:   131 TG-PTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAA-PARPKYRHEFYQKPEEVVVT 188
             +  P  + S +      + + +  ++   +  N +       + K ++++YQ   +VV+T
Sbjct:   127 SSDPPALDSQSAGITGADANFSVWIKRCQEAQNGSESEVWTHQSKIKYDWYQTESQVVIT 186

Query:   189 VFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL 248
             +  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP +  ++VLSTK+EI+L
Sbjct:   187 LMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKL 246

Query:   249 AKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXX 308
              K E ++W  LE  +G V P    P       +  YPSS P   +WDKL  ++       
Sbjct:   247 KKPEAVRWEKLE-GQGDV-P---TPKQFVADVKNLYPSSSPYTRNWDKLVGEIKEEEKNE 301

Query:   309 XLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGME 368
              L+GDAALN+ FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME
Sbjct:   302 KLEGDAALNRLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDME 361

Query:   369 MKKW 372
              KK+
Sbjct:   362 WKKY 365

GO:0005634 "nucleus" evidence=IEA

GO:0000151 "ubiquitin ligase complex" evidence=TAS

GO:0000776 "kinetochore" evidence=TAS

GO:0007067 "mitosis" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0035872 "nucleotide-binding domain, leucine rich repeat containing receptor signaling pathway" evidence=TAS

GO:0045087 "innate immune response" evidence=TAS

UNIPROTKB|Q2KIK0 SUGT1 "Suppressor of G2 allele of SKP1 homolog" [Bos taurus (taxid:9913)]

 Score = 458 (166.3 bits), Expect = 2.2e-43, P = 2.2e-43
 Identities = 118/345 (34%), Positives = 182/345 (52%)

Query:    35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
             ++ LF   + A I+ Q+   A+ +  +A+E +P  +  Y ++A   + L  Y  A    +
Sbjct:    12 ASRLFRSFSDALIE-QDPQAALEELTKALEQKPDDAPYYCQRAYCHILLGNYSDAVADAK 70

Query:    95 KGASLAPGDSRFTNLIKE--CEERIAEETGELQK----QPLETGPTNVVS-TNNVQPATN 147
             K   L P  S  T L+++  CE         L+     Q L +   ++ +     Q A N
Sbjct:    71 KSLELNPNSS--TALLRKGICEYHEKNYAAALETFTEGQKLNSADADLTAWIKRCQEAQN 128

Query:   148 ISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQI 207
              S  E       VS   A     + K ++++YQ   +V++T+  K +   +V V+F E+ 
Sbjct:   129 GSQPE-------VS---ASQRTHQSKIKYDWYQTESQVIITLMIKNVQKNDVNVEFSEKE 178

Query:   208 LSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVV 267
             LS  + +P  + Y  + RL   IIP +  ++VLSTK+EI++ K E ++W  LE  +G V 
Sbjct:   179 LSALVKLPSGDDYSLKLRLLHPIIPEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV- 236

Query:   268 PQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADA 327
             P   NP       +  YPSS     +WDKL  ++        L+GDAALNK FQ+IY+D 
Sbjct:   237 P---NPKPFIADVKNLYPSSSHYTRNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDG 293

Query:   328 DEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372
              ++ +RAM KSF+ES GTVLSTNW +VG +KVE +PPD ME KK+
Sbjct:   294 SDEVKRAMNKSFMESGGTVLSTNWSDVGKRKVEINPPDDMEWKKY 338

GO:0005737 "cytoplasm" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1915205 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Mus musculus (taxid:10090)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 103/319 (32%), Positives = 171/319 (53%)

Query:    55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
             A+ +  +A+E  P  ++ Y ++A   + L +Y      ++K   L P +   T L+++  
Sbjct:    30 ALEELTKALEQNPDDAQYYCQRAYCHILLGKYRDGIADVKKSLELNPNNC--TALLRK-- 85

Query:   115 ERIAEETGELQKQPLET-GPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPK 173
               I E   +     LET      + + +    T I   ++++   +  +E + +   + K
Sbjct:    86 -GICEYHEKDYASALETFAEGQKLDSTDTNFDTWIKRCQEIQNGSE--SEVSASQRTQSK 142

Query:   174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 233
              ++++YQ    V++T+  K +   +V V F E+ LS  + +P  E Y  + RL   IIP 
Sbjct:   143 IKYDWYQTESHVIITLMIKSVQKNDVRVGFSERELSALVKIPAGEDYSLKLRLLHPIIPE 202

Query:   234 KCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVD 293
             +  ++VLSTK+EI++ K E ++W  LE  +G        P   +   +  YPSS     +
Sbjct:   203 QSTFKVLSTKIEIKMKKPEAVRWEKLE-GQG----DEPTPKQFTADVKNMYPSSSHYTRN 257

Query:   294 WDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKE 353
             WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW +
Sbjct:   258 WDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNWSD 317

Query:   354 VGSKKVEGSPPDGMEMKKW 372
             VG +KVE +PPD ME K++
Sbjct:   318 VGKRKVEINPPDDMEWKQY 336

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0008150 "biological_process" evidence=ND

RGD|1307550 Sugt1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Rattus norvegicus (taxid:10116)]

 Score = 436 (158.5 bits), Expect = 4.6e-41, P = 4.6e-41
 Identities = 107/321 (33%), Positives = 173/321 (53%)

Query:    55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE-- 112
             A+ +  +A+E  P  ++ Y ++A   + L +Y      ++K   L P +S  T L+++  
Sbjct:    30 ALEELTKALEQNPDDAQYYCQRAYCHILLGKYCDGIADVKKSLELNPNNS--TALLRKGI 87

Query:   113 CEERIAEETGELQKQPLETGPTNVVSTN-NVQPATNISSTEDVETVMDVSNEAAMAAPAR 171
             CE    +    L+    E    +   TN ++     I   ++++   +    A+    ++
Sbjct:    88 CEYYEKDYASALETFA-EGQKLDGTDTNFDIW----IKRCQEIQNGSEPEVSASQRTQSK 142

Query:   172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKII 231
              KY  ++YQ    V++T+  K +   +V VDF E+ LS  + +P  E    + RL   II
Sbjct:   143 IKY--DWYQTESHVIITLMIKNVQKNDVRVDFSEKELSAVVKIPSGEDCSLKLRLLHPII 200

Query:   232 PAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTR 291
             P +  ++VLSTK+EI++ K E ++W  LE  +G V P    P   +   +  YPSS    
Sbjct:   201 PEQSTFKVLSTKIEIKMKKPEAVRWEKLE-GQGDV-PA---PKQFTADVKNMYPSSSHYT 255

Query:   292 VDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 351
              +WDKL  ++        L+GDAALNK FQ+IY+D  ++ +RAM KSF+ES GTVLSTNW
Sbjct:   256 RNWDKLVGEIKEEEKNEKLEGDAALNKLFQQIYSDGSDEVKRAMNKSFMESGGTVLSTNW 315

Query:   352 KEVGSKKVEGSPPDGMEMKKW 372
              +VG +KVE +PPD ME K++
Sbjct:   316 SDVGKRKVEINPPDDMEWKQY 336

GO:0005634 "nucleus" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

CGD|CAL0004941 SGT1 [Candida albicans (taxid:5476)]

 Score = 376 (137.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:   134 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 193
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   194 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   252 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 311
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   312 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 371
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   372 WE 373
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0000151 "ubiquitin ligase complex" evidence=IEA

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

GO:0019933 "cAMP-mediated signaling" evidence=IEA

GO:0051382 "kinetochore assembly" evidence=IEA

GO:0030674 "protein binding, bridging" evidence=IEA

GO:0051087 "chaperone binding" evidence=IEA

UNIPROTKB|Q59X42 CaO19.11570 "Putative uncharacterized protein" [Candida albicans SC5314 (taxid:237561)]

 Score = 376 (137.4 bits), Expect = 4.6e-40, Sum P(2) = 4.6e-40
 Identities = 85/242 (35%), Positives = 135/242 (55%)

Query:   134 TNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKG 193
             +N  ST++  PA   ++     T +DV N+ A   P   K+R ++YQ  EEV++T++AK 
Sbjct:   183 SNQESTSSA-PAAQATTQAPKSTNVDVINKIA---PLNVKFRDDWYQSNEEVIITIYAKK 238

Query:   194 IPAKNVTVDFGEQILSVSID--VPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA 251
             +  + + V+F    +S+S       E  Y+  P LF +I+P++ +Y+V STK+EI L K 
Sbjct:   239 VNEEKLKVEFDTNSVSISFPSAAASEYNYYLDP-LFAEIVPSESKYKVYSTKLEITLKKK 297

Query:   252 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVXXXXXXXXLD 311
             +  +W  LE      V    +           YP+S   +++W+  +            +
Sbjct:   298 DANKWPELEKQAVEGVTDNQDKDKKVDPSELVYPTSSKKKINWNNFKIDDDDKE-----E 352

Query:   312 GDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK 371
             G+   N FF++I+ D DED+RRAM KS+V+SNGTVL+T+W E   K+ E  PPDGME+KK
Sbjct:   353 GNE--NDFFRKIFKDVDEDSRRAMMKSYVQSNGTVLTTSWDEAKDKEFEVLPPDGMEVKK 410

Query:   372 WE 373
             W+
Sbjct:   411 WD 412

GO:0035690 "cellular response to drug" evidence=IMP

GO:0044182 "filamentous growth of a population of unicellular organisms" evidence=IMP

ZFIN|ZDB-GENE-041114-56 sgut1 "SGT1, suppressor of G2 allele of SKP1 (S. cerevisiae)" [Danio rerio (taxid:7955)]

 Score = 414 (150.8 bits), Expect = 9.9e-39, P = 9.9e-39
 Identities = 113/322 (35%), Positives = 158/322 (49%)

Query:    58 DANRAIE-----LEPSMSKAYW--RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI 110
             D  RA+E     L      A W  ++A A + L+EY  A    +K   L PG +     I
Sbjct:    15 DPRRALEELNEALGEKADNAEWLCQRAYAYILLKEYTKAIDDAKKAQDLQPGLALPFLRI 74

Query:   111 KECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPA 170
                E  +         Q L  G     S    Q  T +   E  E    + N+ +     
Sbjct:    75 GIAEYHLHNFVAA--HQALTAGRDLDSSVEEFQ--TWMQHCE-TEMATHIPNKTS-DLQT 128

Query:   171 RPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI 230
                 +H++YQ   +V VT+  K    + V V FGE+ L+  + +P  E Y  +  L   I
Sbjct:   129 TTHVKHDWYQTESQVAVTIMVKNAKKEGVIVSFGERELTAVVKLPSGEDYCLKVHLLHPI 188

Query:   231 IPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPT 290
             +P +  Y++LSTK+EI++ K E IQW  L+   G      V   + S      YPSS   
Sbjct:   189 VPQQSTYKILSTKIEIKMKKTEAIQWEKLQ---GEETLSNVKHFTAS-----QYPSSSHY 240

Query:   291 RVDWDKLEAQVXXXXXXXXLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTN 350
               +WDKL  ++        L+GDAALNK FQ+IY+D  +D RRAM KSF+ES GTVLSTN
Sbjct:   241 TRNWDKLVGEIKEEEKKENLEGDAALNKLFQQIYSDGSDDVRRAMNKSFMESGGTVLSTN 300

Query:   351 WKEVGSKKVEGSPPDGMEMKKW 372
             W +VG +KVE +PPD +E KK+
Sbjct:   301 WIDVGKRKVEMNPPDDVEWKKY 322

GO:0005575 "cellular_component" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q0JL44	SGT1_ORYSJ	No assigned EC number	0.6604	0.9652	0.9836	yes	no
B0BN85	SUGT1_RAT	No assigned EC number	0.3397	0.8475	0.9434	yes	no
Q9CX34	SUGT1_MOUSE	No assigned EC number	0.3314	0.8475	0.9434	yes	no
Q9SUT5	SGT1B_ARATH	No assigned EC number	0.6525	0.9491	0.9916	yes	no
Q2KIK0	SUGT1_BOVIN	No assigned EC number	0.3535	0.8502	0.9408	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00037765001	SubName- Full=Chromosome undetermined scaffold_91, whole genome shotgun sequence; (361 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00038500001	SubName- Full=Chromosome chr16 scaffold_94, whole genome shotgun sequence; (178 aa)					•	•	•		0.947
	GSVIVG00021159001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (792 aa)					•	•			0.810
	GSVIVG00002550001	SubName- Full=Chromosome chr2 scaffold_132, whole genome shotgun sequence; (508 aa)					•	•			0.808
	GSVIVG00014401001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (806 aa)					•	•			0.803
	GSVIVG00033437001	SubName- Full=Chromosome chr19 scaffold_66, whole genome shotgun sequence; (207 aa)						•			0.800
	GSVIVG00029085001	SubName- Full=Chromosome chr12 scaffold_47, whole genome shotgun sequence; (914 aa)						•			0.800
	GSVIVG00016524001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (903 aa)						•			0.800
	GSVIVG00019623001	SubName- Full=Chromosome chr7 scaffold_20, whole genome shotgun sequence; (914 aa)					•		•	•	0.409

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
PLN03088	356	PLN03088, PLN03088, SGT1, suppressor of G2 allele	0.0
pfam05002	78	pfam05002, SGS, SGS domain	1e-33
cd06466	84	cd06466, p23_CS_SGT1_like, p23_like domain similar	2e-32
COG5091	368	COG5091, SGT1, Suppressor of G2 allele of skp1 and	8e-31
cd06463	84	cd06463, p23_like, Proteins containing this p23_li	1e-21
pfam04969	78	pfam04969, CS, CS domain	8e-21
cd06489	84	cd06489, p23_CS_hSgt1_like, p23_like domain simila	1e-18
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-16
cd06488	87	cd06488, p23_melusin_like, p23_like domain similar	1e-14
cd06468	92	cd06468, p23_CacyBP, p23_like domain found in prot	4e-10
pfam13414	69	pfam13414, TPR_11, TPR repeat	4e-09
cd00298	80	cd00298, ACD_sHsps_p23-like, This domain family in	7e-09
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	5e-08
pfam13414	69	pfam13414, TPR_11, TPR repeat	3e-07
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	1e-05
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	2e-05
TIGR00990	615	TIGR00990, 3a0801s09, mitochondrial precursor prot	3e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	7e-05
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	1e-04
COG5010	257	COG5010, TadD, Flp pilus assembly protein TadD, co	1e-04
cd06490	87	cd06490, p23_NCB5OR, p23_like domain found in NAD(	0.001
pfam08959	288	pfam08959, DUF1872, Domain of unknown function (DU	0.002
TIGR02917	899	TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system	0.004
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	0.004

>gnl|CDD|215568 PLN03088, PLN03088, SGT1, suppressor of G2 allele of SKP1; Provisional

 Score =  599 bits (1546), Expect = 0.0
 Identities = 264/374 (70%), Positives = 301/374 (80%), Gaps = 18/374 (4%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           MA DLE KAKEAF+DD F LA DLY+QAI++ PN+AEL+ADRAQA+IKL NFTEAVADAN
Sbjct: 1   MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADAN 60

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           +AIEL+PS++KAY RK TACMKLEEY+TAK ALEKGASLAPGDSRFT LIKEC+E+IAEE
Sbjct: 61  KAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEE 120

Query: 121 TGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPKYRHEFYQ 180
             +L +      P                S+     V +      +  P++PKYRHEFYQ
Sbjct: 121 EKDLVQPVPSDLP----------------SSVTAPPVEEADA-TPVVPPSKPKYRHEFYQ 163

Query: 181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL 240
           KPEEVVVTVFAKG+PA+NV VDFGEQILSV I+VPGE+AYH QPRLFGKIIP KC+YEVL
Sbjct: 164 KPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL 223

Query: 241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ 300
           STK+EIRLAKAEPI W+SLE+ KG  V  + N  S   S RP YPSSK  + DWDKLEA+
Sbjct: 224 STKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAE 282

Query: 301 VKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVE 360
           VKKEEK+EKLDGDAALNKFF+EIY +ADEDTRRAM KSFVESNGTVLSTNWKEVGSKK+E
Sbjct: 283 VKKEEKDEKLDGDAALNKFFREIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIE 342

Query: 361 GSPPDGMEMKKWEY 374
           GSPPDGME+KKWEY
Sbjct: 343 GSPPDGMELKKWEY 356

Length = 356

>gnl|CDD|218373 pfam05002, SGS, SGS domain

 Score =  119 bits (301), Expect = 1e-33
 Identities = 51/81 (62%), Positives = 62/81 (76%), Gaps = 4/81 (4%)

Query: 292 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNW 351
            DWDKL     KE+++++ D  AALN FF+++Y D D+DT+RAM KSF ESNGTVLSTNW
Sbjct: 2   KDWDKL----TKEDEDDEEDPSAALNNFFKKLYKDGDDDTKRAMMKSFTESNGTVLSTNW 57

Query: 352 KEVGSKKVEGSPPDGMEMKKW 372
            EVG KKVE  PP+GME KKW
Sbjct: 58  DEVGKKKVETKPPEGMEAKKW 78

This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins. Length = 78

>gnl|CDD|107223 cd06466, p23_CS_SGT1_like, p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

 Score =  116 bits (293), Expect = 2e-32
 Identities = 41/84 (48%), Positives = 53/84 (63%)

Query: 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 236
           ++YQ    V VT++AK +  ++V V+F EQ LSVSI +PG   Y  +  LFG I P + +
Sbjct: 1   DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSK 60

Query: 237 YEVLSTKVEIRLAKAEPIQWSSLE 260
             VL TKVEI L KAEP  W SLE
Sbjct: 61  VSVLPTKVEITLKKAEPGSWPSLE 84

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies suggest that the interaction of hSgt1 with Hsp90 and Hsp70 may be regulated by S100A6 in a Ca2+ dependent fashion. This group also includes the p23_like domains of Melusin and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Melusin is a vertebrate protein which interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|227422 COG5091, SGT1, Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

 Score =  120 bits (301), Expect = 8e-31
 Identities = 64/240 (26%), Positives = 102/240 (42%), Gaps = 13/240 (5%)

Query: 138 STNNVQPATNISSTEDVETVMD-VSNEAAMAAPA-RPKYRHEFYQKPEEVVVTVFAKGIP 195
           + + ++P  +I +  D  +    +S      AP   PK    +          +F    P
Sbjct: 137 NKHTIKPVESIENRGDNNSSHSPISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPP 196

Query: 196 AKNVTVD--FGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE 252
             +  V        LS+S               L+ ++ P     +  S +VE+ L K E
Sbjct: 197 VGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYKEVYPDIRSIKSFSKRVEVHLRKVE 256

Query: 253 PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDG 312
            ++W  L    G    +         +     P S   + DW +L     ++  +E  + 
Sbjct: 257 MVRWGGLN---GRPADESSRLSDEGKNSDSATPKSSKKQDDWKELM---VEDSGDE--EN 308

Query: 313 DAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW 372
            + ++  FQ++Y  AD+DTRRAM KSF ESNGT LST+W +V SK +   PP+GME K W
Sbjct: 309 PSVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW 368

Length = 368

>gnl|CDD|107220 cd06463, p23_like, Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

 Score = 87.7 bits (218), Expect = 1e-21
 Identities = 31/84 (36%), Positives = 48/84 (57%), Gaps = 1/84 (1%)

Query: 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRY 237
           +YQ  +EV +T+  K +  K+V V+F  + L+VS+   G + Y  +  LFG I P + ++
Sbjct: 1   WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKW 60

Query: 238 EVLSTKVEIRLAKAEPIQ-WSSLE 260
            V   K+EI L K EP + W  LE
Sbjct: 61  TVEDRKIEITLKKKEPGEWWPRLE 84

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). hB-ind1 plays a role in the signaling pathway mediated by the small GTPase Rac1, NUDC is needed for nuclear movement, Melusin interacts with two splice variants of beta1 integrin, and NCB5OR plays a part in maintaining viable pancreatic beta cells. Length = 84

>gnl|CDD|218355 pfam04969, CS, CS domain

 Score = 85.0 bits (211), Expect = 8e-21
 Identities = 30/77 (38%), Positives = 44/77 (57%), Gaps = 1/77 (1%)

Query: 175 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 233
           R+++YQ  +EV +T+  KG    K+V V+   + L VSI  PG + Y     LFG I P 
Sbjct: 2   RYDWYQTLDEVTITIPLKGVTKKKDVKVEIKPRSLKVSIKGPGGKEYLLDGELFGPIDPE 61

Query: 234 KCRYEVLSTKVEIRLAK 250
           +  +++  TKVEI L K
Sbjct: 62  ESSWKIEDTKVEITLKK 78

The CS and CHORD (pfam04968) are fused into a single polypeptide chain in metazoans but are found in separate proteins in plants; this is thought to be indicative of an interaction between CS and CHORD. It has been suggested that the CS domain is a binding module for HSP90, implying that CS domain-containing proteins are involved in recruiting heat shock proteins to multiprotein assemblies. Length = 78

>gnl|CDD|107239 cd06489, p23_CS_hSgt1_like, p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

 Score = 79.3 bits (196), Expect = 1e-18
 Identities = 31/84 (36%), Positives = 54/84 (64%)

Query: 177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR 236
           ++YQ   +VV+T+  K +  ++V+V+F ++ LS ++ +P    Y  +  L   I+P +  
Sbjct: 1   DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSS 60

Query: 237 YEVLSTKVEIRLAKAEPIQWSSLE 260
           Y++LSTK+EI+L K E I+WS LE
Sbjct: 61  YKILSTKIEIKLKKTEAIRWSKLE 84

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup. Length = 84

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 74.0 bits (182), Expect = 2e-16
 Identities = 32/98 (32%), Positives = 52/98 (53%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
            L       +    ++ A + Y +A+E+ P++A+ + + A A  KL  + EA+ D  +A+
Sbjct: 2   ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKAL 61

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           EL+P  +KAY+    A  KL +YE A  A EK   L P
Sbjct: 62  ELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDP 99

Length = 100

>gnl|CDD|107238 cd06488, p23_melusin_like, p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

 Score = 68.5 bits (168), Expect = 1e-14
 Identities = 33/87 (37%), Positives = 49/87 (56%), Gaps = 2/87 (2%)

Query: 175 RHEFYQKPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPA 233
           RH+++Q    VVV+V+AK   P  +V V+    +L++ I   G + +     L+G I   
Sbjct: 2   RHDWHQTGSHVVVSVYAKNSNPELSV-VEANSTVLTIHIVFEGNKEFQLDIELWGVIDVE 60

Query: 234 KCRYEVLSTKVEIRLAKAEPIQWSSLE 260
           K    +L TKVEI+L KAEP  W+ LE
Sbjct: 61  KSSVNMLPTKVEIKLRKAEPGSWAKLE 87

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (CHORD) domains. Length = 87

>gnl|CDD|107225 cd06468, p23_CacyBP, p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

 Score = 55.7 bits (135), Expect = 4e-10
 Identities = 27/86 (31%), Positives = 46/86 (53%), Gaps = 6/86 (6%)

Query: 180 QKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI-DVPGEEAYHFQ-PRLFGKIIPAK 234
           Q  + V + +  KG+   P +N+ V+F E+   + + D+ G+  Y F   RL  KI P K
Sbjct: 8   QSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKN-YRFTINRLLKKIDPEK 66

Query: 235 CRYEVLSTKVEIRLAKAEPIQWSSLE 260
             ++V + ++ I LAK +  +W SL 
Sbjct: 67  SSFKVKTDRIVITLAKKKEKKWESLT 92

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes, in mouse endometrial events, and in thymocyte development. Length = 92

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 52.3 bits (126), Expect = 4e-09
 Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 1/67 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADAN 60
          A  L+      F    ++ A + Y +A+E+ P++AE + + A A +KL +++ EA+ D  
Sbjct: 3  AEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALEDLE 62

Query: 61 RAIELEP 67
          +A+EL+P
Sbjct: 63 KALELDP 69

Length = 69

>gnl|CDD|107219 cd00298, ACD_sHsps_p23-like, This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

 Score = 51.8 bits (125), Expect = 7e-09
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 7/80 (8%)

Query: 178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-------YHFQPRLFGKI 230
           +YQ  +EVVVTV   G+  +++ V+  + +L++S     EE        +     L   +
Sbjct: 1   WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDV 60

Query: 231 IPAKCRYEVLSTKVEIRLAK 250
            P K +  + +  +EI L K
Sbjct: 61  DPEKSKASLENGVLEITLPK 80

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind1), NUD (nuclear distribution) C, Melusin, and NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR). Length = 80

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 50.1 bits (120), Expect = 5e-08
 Identities = 21/63 (33%), Positives = 34/63 (53%)

Query: 48  KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT 107
           KL ++ EA+    +A+EL+P  + AY+  A A  KL +YE A    EK   L P +++  
Sbjct: 12  KLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAY 71

Query: 108 NLI 110
             +
Sbjct: 72  YNL 74

Length = 100

>gnl|CDD|222112 pfam13414, TPR_11, TPR repeat

 Score = 46.9 bits (112), Expect = 3e-07
 Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 1/69 (1%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL-EEYETAKVA 92
           ++AE   +   A  KL ++ EA+    +A+EL+P  ++AY+  A A +KL ++YE A   
Sbjct: 1   DNAEALKNLGNALFKLGDYDEAIEAYEKALELDPDNAEAYYNLALAYLKLGKDYEEALED 60

Query: 93  LEKGASLAP 101
           LEK   L P
Sbjct: 61  LEKALELDP 69

Length = 69

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 13/64 (20%), Positives = 26/64 (40%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
             A+A+++  ++ EA+A    A+   P  ++A      A ++      A   L    +  
Sbjct: 2   ALARAALRAGDYDEALAALEAALARYPLAAEALLLLGEALLRQGRLAEAAALLRAALAAD 61

Query: 101 PGDS 104
           P D 
Sbjct: 62  PDDP 65

Length = 65

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 42.8 bits (101), Expect = 2e-05
 Identities = 16/51 (31%), Positives = 32/51 (62%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +E A + Y +A+E+ P++A+ + +   A  KL  + EA+    +A+EL+P+
Sbjct: 50  YEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYEEALEAYEKALELDPN 100

Length = 100

>gnl|CDD|233223 TIGR00990, 3a0801s09, mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

 Score = 45.8 bits (108), Expect = 3e-05
 Identities = 47/163 (28%), Positives = 73/163 (44%), Gaps = 3/163 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L++K  +A+ +  F  A  LYS+AIE  P+    +++RA     L ++ + V D   
Sbjct: 127 AAKLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPV-YYSNRAACHNALGDWEKVVEDTTA 185

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           A+EL+P  SKA  R+A A   L +Y  A   L+  AS      R     +  E  + +  
Sbjct: 186 ALELDPDYSKALNRRANAYDGLGKYADA--LLDLTASCIIDGFRNEQSAQAVERLLKKFA 243

Query: 122 GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEA 164
               K+ LET P N+ S   V         +     ++ SNE 
Sbjct: 244 ESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 615

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 44.7 bits (106), Expect = 7e-05
 Identities = 24/85 (28%), Positives = 39/85 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y +AI + PN+  +    A   I+   F EA   A+  ++  P+   A++ KA
Sbjct: 209 IELALAAYRKAIALRPNNIAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKA 268

Query: 78  TACMKLEEYETAKVALEKGASLAPG 102
               + + YE A+  L+     AP 
Sbjct: 269 LVDFQKKNYEDARETLQDALKSAPE 293

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 25/87 (28%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            ELA   Y QA+ I P S       AQ ++    F EA A  +  +  +P    A   K 
Sbjct: 141 LELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              + L   E A  A  K  +L P + 
Sbjct: 201 DLLLSLGNIELALAAYRKAIALRPNNI 227

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|227343 COG5010, TadD, Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 22/83 (26%), Positives = 38/83 (45%)

Query: 26  SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
            ++    P   EL A + +  I+  NF EAV+   +A  L P+  +A+     A  +L  
Sbjct: 90  QKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR 149

Query: 86  YETAKVALEKGASLAPGDSRFTN 108
           ++ A+ A  +   LAP +    N
Sbjct: 150 FDEARRAYRQALELAPNEPSIAN 172

Length = 257

>gnl|CDD|107240 cd06490, p23_NCB5OR, p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

 Score = 36.9 bits (86), Expect = 0.001
 Identities = 28/84 (33%), Positives = 46/84 (54%), Gaps = 4/84 (4%)

Query: 179 YQKPEEVVVTVF--AKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKII-PAKC 235
           +Q   EV + V+  +KG PA  V VD  ++ L V I + G+++Y     L  ++  P + 
Sbjct: 4   FQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEI-ILGDKSYLLHLDLSNEVQWPCEV 62

Query: 236 RYEVLSTKVEIRLAKAEPIQWSSL 259
           R    + K+E+ L K EP +W+SL
Sbjct: 63  RISTETGKIELVLKKKEPEKWTSL 86

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases. Length = 87

>gnl|CDD|220081 pfam08959, DUF1872, Domain of unknown function (DUF1872)

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 52/220 (23%), Positives = 81/220 (36%), Gaps = 20/220 (9%)

Query: 114 EERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDVSNEAAMAAPARPK 173
           E  +     E+   P +  P    +T    P    ++ E        S    M      K
Sbjct: 24  ECNLGSVRSEVWVDP-DPDPDLSDATELGGPGKTDAAGETC-LEDTTSEPEPMVNLQFVK 81

Query: 174 YRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQ------------ILSVSIDVPGEEAY 220
                Y+K  + VVV V+ K I      V F EQ             L +  D      +
Sbjct: 82  NDS--YEKGTDLVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPDCGPNTHF 139

Query: 221 HFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE--FSKGAVVPQRVNPPSVSG 278
            +Q +L   I P +C Y    ++++I L K +  +W  LE   S+GAV   +V  PS   
Sbjct: 140 RWQVKLRNLIEPEQCSYCFTPSRLDITLKKRQSQRWGGLEAPASQGAVGGAKVAVPSGPA 199

Query: 279 SPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNK 318
               T P S    +   + EA+  ++EK +    D  L+ 
Sbjct: 200 PMDKTQPGSSKHSLP-AQEEARAVEKEKAKARAEDTGLDP 238

The CS domain, found in Ubiquitin specific peptidase 19 (USP-19), has no known function. Length = 288

>gnl|CDD|234059 TIGR02917, PEP_TPR_lipo, putative PEP-CTERM system TPR-repeat lipoprotein

 Score = 38.9 bits (91), Expect = 0.004
 Identities = 28/88 (31%), Positives = 42/88 (47%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAYWR 75
            E AY   +Q ++ +PNS    A R  ASI+L+     EA+A  + A+ L+P    A   
Sbjct: 311 LEQAYQYLNQILKYAPNS--HQARRLLASIQLRLGRVDEAIATLSPALGLDPDDPAALSL 368

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
              A + L ++E A   L K   L P +
Sbjct: 369 LGEAYLALGDFEKAAEYLAKATELDPEN 396

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. Length = 899

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 38.3 bits (87), Expect = 0.004
 Identities = 25/105 (23%), Positives = 43/105 (40%), Gaps = 4/105 (3%)

Query: 17  YFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKA 72
            +E A +LY +A+E+ P     AE           L  + EA+    +A++L P   ++A
Sbjct: 145 DYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEA 204

Query: 73  YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI 117
                   +KL +YE A    EK   L P ++     +      +
Sbjct: 205 LLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLEL 249

Length = 291

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	100.0
KOG1309	196	consensus Suppressor of G2 allele of skp1 [Signal	100.0
COG5091	368	SGT1 Suppressor of G2 allele of skp1 and related p	100.0
PF05002	82	SGS: SGS domain ; InterPro: IPR007699 This domain	100.0
KOG3260	224	consensus Calcyclin-binding protein CacyBP [Signal	99.96
cd06488	87	p23_melusin_like p23_like domain similar to the C-	99.9
cd06489	84	p23_CS_hSgt1_like p23_like domain similar to the C	99.87
cd00237	106	p23 p23 binds heat shock protein (Hsp)90 and parti	99.86
KOG0553	304	consensus TPR repeat-containing protein [General f	99.84
cd06465	108	p23_hB-ind1_like p23_like domain found in human (h	99.83
cd06468	92	p23_CacyBP p23_like domain found in proteins simil	99.81
cd06466	84	p23_CS_SGT1_like p23_like domain similar to the C-	99.81
cd06490	87	p23_NCB5OR p23_like domain found in NAD(P)H cytoch	99.8
KOG3158	180	consensus HSP90 co-chaperone p23 [Posttranslationa	99.71
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.69
PF04969	79	CS: CS domain; InterPro: IPR017447 The function of	99.69
cd06469	78	p23_DYX1C1_like p23_like domain found in proteins	99.68
cd06493	85	p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear	99.67
cd06463	84	p23_like Proteins containing this p23_like domain	99.67
cd06467	85	p23_NUDC_like p23_like domain of NUD (nuclear dist	99.66
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	99.64
PRK15359	144	type III secretion system chaperone protein SscB;	99.64
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.59
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	99.59
cd06494	93	p23_NUDCD2_like p23-like NUD (nuclear distribution	99.56
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	99.55
KOG4234	271	consensus TPR repeat-containing protein [General f	99.54
KOG1667	320	consensus Zn2+-binding protein Melusin/RAR1, conta	99.53
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.51
KOG4648	536	consensus Uncharacterized conserved protein, conta	99.45
PRK11189	296	lipoprotein NlpI; Provisional	99.42
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.41
cd06492	87	p23_mNUDC_like p23-like NUD (nuclear distribution)	99.39
cd06495	102	p23_NUDCD3_like p23-like NUD (nuclear distribution	99.38
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	99.37
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.36
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	99.32
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.29
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.27
PRK15331	165	chaperone protein SicA; Provisional	99.27
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.26
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	99.24
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	99.19
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	99.19
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	99.18
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.16
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	99.16
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.15
PRK12370	553	invasion protein regulator; Provisional	99.15
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.14
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	99.14
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.14
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.13
PRK15359	144	type III secretion system chaperone protein SscB;	99.13
KOG1126	638	consensus DNA-binding cell division cycle control	99.12
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.12
PRK12370	553	invasion protein regulator; Provisional	99.11
cd00298	80	ACD_sHsps_p23-like This domain family includes the	99.1
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.09
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.08
KOG1125	579	consensus TPR repeat-containing protein [General f	99.08
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.07
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.07
KOG2076	895	consensus RNA polymerase III transcription factor	99.07
PRK11189	296	lipoprotein NlpI; Provisional	99.06
KOG1126	638	consensus DNA-binding cell division cycle control	99.06
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.06
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.05
PRK10803	263	tol-pal system protein YbgF; Provisional	99.05
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	99.04
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.03
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.02
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	99.01
KOG2265	179	consensus Nuclear distribution protein NUDC [Signa	99.01
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.0
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.98
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	98.97
PF13512	142	TPR_18: Tetratricopeptide repeat	98.97
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	98.96
KOG4555	175	consensus TPR repeat-containing protein [Function	98.95
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.94
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.91
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	98.9
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.9
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.87
PLN02789	320	farnesyltranstransferase	98.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	98.84
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.83
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.83
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.82
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.8
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.8
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.79
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.79
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	98.79
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	98.79
PF13371	73	TPR_9: Tetratricopeptide repeat	98.78
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	98.77
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.76
PF12688	120	TPR_5: Tetratrico peptide repeat	98.76
KOG2003	840	consensus TPR repeat-containing protein [General f	98.76
PLN02789	320	farnesyltranstransferase	98.74
PRK11788	389	tetratricopeptide repeat protein; Provisional	98.74
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.73
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.72
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	98.72
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.69
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.69
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	98.68
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.67
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.67
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.66
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.64
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.63
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	98.6
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	98.58
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	98.57
PRK14574	822	hmsH outer membrane protein; Provisional	98.57
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.56
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	98.56
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.52
KOG0553	304	consensus TPR repeat-containing protein [General f	98.51
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.49
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.49
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.48
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.46
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.45
PRK14574	822	hmsH outer membrane protein; Provisional	98.44
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.43
KOG1310	758	consensus WD40 repeat protein [General function pr	98.43
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.43
KOG1125	579	consensus TPR repeat-containing protein [General f	98.42
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.41
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.4
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.39
PRK11906	458	transcriptional regulator; Provisional	98.39
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.39
KOG2076	895	consensus RNA polymerase III transcription factor	98.38
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.36
PRK11906	458	transcriptional regulator; Provisional	98.35
KOG1129	478	consensus TPR repeat-containing protein [General f	98.35
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.34
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.3
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	98.28
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	98.27
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	98.25
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.25
KOG1129	478	consensus TPR repeat-containing protein [General f	98.24
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	98.22
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.21
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.19
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.18
COG4105	254	ComL DNA uptake lipoprotein [General function pred	98.17
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	98.17
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.15
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.15
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	98.11
KOG2003	840	consensus TPR repeat-containing protein [General f	98.1
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	98.09
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.09
KOG4234	271	consensus TPR repeat-containing protein [General f	98.08
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	98.08
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.08
PRK15331	165	chaperone protein SicA; Provisional	98.05
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.04
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.02
KOG0495	913	consensus HAT repeat protein [RNA processing and m	98.02
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	98.01
PF12688	120	TPR_5: Tetratrico peptide repeat	98.01
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.01
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	97.99
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.99
PF13428	44	TPR_14: Tetratricopeptide repeat	97.95
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.93
cd06472	92	ACD_ScHsp26_like Alpha crystallin domain (ACD) fou	97.92
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.92
KOG1128	777	consensus Uncharacterized conserved protein, conta	97.91
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	97.9
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.9
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.89
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.87
COG0071	146	IbpA Molecular chaperone (small heat shock protein	97.86
PF13431	34	TPR_17: Tetratricopeptide repeat	97.84
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.82
COG3118	304	Thioredoxin domain-containing protein [Posttransla	97.81
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.8
PF13431	34	TPR_17: Tetratricopeptide repeat	97.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.75
PRK10803	263	tol-pal system protein YbgF; Provisional	97.73
KOG0495	913	consensus HAT repeat protein [RNA processing and m	97.72
KOG3785	557	consensus Uncharacterized conserved protein [Funct	97.69
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	97.69
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	97.69
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	97.69
PF13428	44	TPR_14: Tetratricopeptide repeat	97.67
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	97.67
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.6
KOG4648	536	consensus Uncharacterized conserved protein, conta	97.6
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	97.57
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	97.57
cd06464	88	ACD_sHsps-like Alpha-crystallin domain (ACD) of al	97.55
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.54
cd06471	93	ACD_LpsHSP_like Group of bacterial proteins contai	97.54
PF00011	102	HSP20: Hsp20/alpha crystallin family This prints e	97.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	97.49
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.49
KOG3364	149	consensus Membrane protein involved in organellar	97.47
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.44
KOG4340	459	consensus Uncharacterized conserved protein [Funct	97.4
PF13512	142	TPR_18: Tetratricopeptide repeat	97.4
KOG2471	696	consensus TPR repeat-containing protein [General f	97.39
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	97.33
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	97.3
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	97.29
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.28
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.28
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.27
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	97.21
PRK10941	269	hypothetical protein; Provisional	97.21
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	97.2
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	97.15
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	97.12
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	97.11
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.11
KOG4814	872	consensus Uncharacterized conserved protein [Funct	97.1
PRK10941	269	hypothetical protein; Provisional	97.08
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	97.08
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.03
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	97.01
cd06479	81	ACD_HspB7_like Alpha crystallin domain (ACD) found	96.92
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.89
KOG4379	596	consensus Uncharacterized conserved protein (tumor	96.88
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	96.87
cd06475	86	ACD_HspB1_like Alpha crystallin domain (ACD) found	96.87
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.81
cd06497	86	ACD_alphaA-crystallin_HspB4 Alpha-crystallin domai	96.76
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	96.76
KOG4555	175	consensus TPR repeat-containing protein [Function	96.71
PF03704	146	BTAD: Bacterial transcriptional activator domain;	96.7
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.69
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.69
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	96.68
KOG4151	748	consensus Myosin assembly protein/sexual cycle pro	96.65
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.64
cd06526	83	metazoan_ACD Alpha-crystallin domain (ACD) of meta	96.64
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.61
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	96.6
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	96.59
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.58
cd06498	84	ACD_alphaB-crystallin_HspB5 Alpha-crystallin domai	96.58
COG4105	254	ComL DNA uptake lipoprotein [General function pred	96.58
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.54
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	96.49
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.48
KOG4507	886	consensus Uncharacterized conserved protein, conta	96.46
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	96.4
KOG3824	472	consensus Huntingtin interacting protein HYPE [Gen	96.4
cd06478	83	ACD_HspB4-5-6 Alpha-crystallin domain found in alp	96.31
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	96.29
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.27
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	96.25
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	96.25
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	96.16
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	96.15
PRK04841	903	transcriptional regulator MalT; Provisional	96.15
cd06470	90	ACD_IbpA-B_like Alpha-crystallin domain (ACD) foun	96.13
KOG1915	677	consensus Cell cycle control protein (crooked neck	96.12
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.03
PRK04841	903	transcriptional regulator MalT; Provisional	96.01
COG4976	287	Predicted methyltransferase (contains TPR repeat)	96.0
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.99
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.99
KOG1586	288	consensus Protein required for fusion of vesicles	95.96
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	95.96
PRK10743	137	heat shock protein IbpA; Provisional	95.92
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.92
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	95.89
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	95.88
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	95.87
PLN03218	1060	maturation of RBCL 1; Provisional	95.84
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	95.77
cd06476	83	ACD_HspB2_like Alpha crystallin domain (ACD) found	95.75
PLN03218	1060	maturation of RBCL 1; Provisional	95.72
cd06481	87	ACD_HspB9_like Alpha crystallin domain (ACD) found	95.59
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	95.49
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	95.48
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.46
KOG2610	491	consensus Uncharacterized conserved protein [Funct	95.44
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	95.4
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	95.4
COG4976	287	Predicted methyltransferase (contains TPR repeat)	95.34
PRK11597	142	heat shock chaperone IbpB; Provisional	95.31
KOG1585	308	consensus Protein required for fusion of vesicles	95.29
COG2912	269	Uncharacterized conserved protein [Function unknow	95.25
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	95.22
KOG1941	518	consensus Acetylcholine receptor-associated protei	95.14
KOG1915	677	consensus Cell cycle control protein (crooked neck	95.13
PLN03077	857	Protein ECB2; Provisional	95.11
KOG1586	288	consensus Protein required for fusion of vesicles	95.09
KOG1585	308	consensus Protein required for fusion of vesicles	95.07
KOG2471	696	consensus TPR repeat-containing protein [General f	95.03
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	94.77
cd06482	87	ACD_HspB10 Alpha crystallin domain (ACD) found in	94.5
PF08190	328	PIH1: pre-RNA processing PIH1/Nop17	94.49
COG2912	269	Uncharacterized conserved protein [Function unknow	94.26
PLN03077	857	Protein ECB2; Provisional	94.15
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	94.14
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	94.12
cd06477	83	ACD_HspB3_Like Alpha crystallin domain (ACD) found	93.88
KOG3364	149	consensus Membrane protein involved in organellar	93.83
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	93.8
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	93.68
COG5191	435	Uncharacterized conserved protein, contains HAT (H	93.67
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.6
KOG4507	886	consensus Uncharacterized conserved protein, conta	93.57
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	93.52
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	93.5
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	93.26
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.16
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	93.09
PF12862	94	Apc5: Anaphase-promoting complex subunit 5	92.87
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	92.83
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	92.7
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	92.61
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	92.54
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	92.5
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	92.41
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.15
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.11
PF12968	144	DUF3856: Domain of Unknown Function (DUF3856); Int	92.1
COG3629	280	DnrI DNA-binding transcriptional activator of the	91.97
KOG2047	835	consensus mRNA splicing factor [RNA processing and	91.96
COG3898	531	Uncharacterized membrane-bound protein [Function u	91.91
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.75
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.74
KOG1550	552	consensus Extracellular protein SEL-1 and related	91.73
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	91.73
KOG4814	872	consensus Uncharacterized conserved protein [Funct	91.43
KOG2047	835	consensus mRNA splicing factor [RNA processing and	90.97
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	90.91
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	90.83
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	90.6
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	90.33
PF05455	177	GvpH: GvpH; InterPro: IPR008633 This family consis	90.28
cd06480	91	ACD_HspB8_like Alpha-crystallin domain (ACD) found	90.18
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	90.17
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	90.04
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	89.56
PF10516	38	SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetrat	89.55
KOG0546	372	consensus HSP90 co-chaperone CPR7/Cyclophilin [Pos	89.41
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.35
PF10373	278	EST1_DNA_bind: Est1 DNA/RNA binding domain; InterP	89.09
COG3629	280	DnrI DNA-binding transcriptional activator of the	88.94
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	88.89
PF07720	36	TPR_3: Tetratricopeptide repeat; InterPro: IPR0117	88.63
PHA02537	230	M terminase endonuclease subunit; Provisional	88.28
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	88.07
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	87.96
COG4455	273	ImpE Protein of avirulence locus involved in tempe	87.92
COG3118	304	Thioredoxin domain-containing protein [Posttransla	87.58
PF09670	379	Cas_Cas02710: CRISPR-associated protein (Cas_Cas02	87.48
PF06957	422	COPI_C: Coatomer (COPI) alpha subunit C-terminus;	87.34
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	86.92
cd02682	75	MIT_AAA_Arch MIT: domain contained within Microtub	86.8
PRK13184	932	pknD serine/threonine-protein kinase; Reviewed	86.72
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.42
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	86.19
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	86.03
KOG2041	1189	consensus WD40 repeat protein [General function pr	85.93
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	85.87
PF04781	111	DUF627: Protein of unknown function (DUF627); Inte	85.76
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.61
KOG0529	421	consensus Protein geranylgeranyltransferase type I	85.45
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	85.41
COG5191	435	Uncharacterized conserved protein, contains HAT (H	85.24
KOG2561	568	consensus Adaptor protein NUB1, contains UBA domai	85.13
KOG1258	577	consensus mRNA processing protein [RNA processing	85.0
KOG0686	466	consensus COP9 signalosome, subunit CSN1 [Posttran	84.93
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	84.56
COG3914	620	Spy Predicted O-linked N-acetylglucosamine transfe	84.32
KOG2581	493	consensus 26S proteasome regulatory complex, subun	84.16
PF10255	404	Paf67: RNA polymerase I-associated factor PAF67; I	83.96
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	83.47
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	83.01
KOG2300	629	consensus Uncharacterized conserved protein [Funct	82.76
KOG2422	665	consensus Uncharacterized conserved protein [Funct	82.64
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	82.39
KOG1310	758	consensus WD40 repeat protein [General function pr	82.3
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	82.27
COG4941	415	Predicted RNA polymerase sigma factor containing a	82.06
cd02683	77	MIT_1 MIT: domain contained within Microtubule Int	81.66
COG3947	361	Response regulator containing CheY-like receiver a	81.65
KOG1839	1236	consensus Uncharacterized protein CLU1/cluA/TIF31	81.25
KOG0529	421	consensus Protein geranylgeranyltransferase type I	81.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.94
PF15015	569	NYD-SP12_N: Spermatogenesis-associated, N-terminal	80.83
PF11817	247	Foie-gras_1: Foie gras liver health family 1; Inte	80.82
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	80.48
PF14863	141	Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB	80.46
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	80.33

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=100.00  E-value=6.1e-91  Score=674.39  Aligned_cols=356  Identities=74%  Similarity=1.131  Sum_probs=306.0

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      |+..+..+|+.+|..|+|+.|+.+|++||.++|.++.+|++||.||.++|++++|+.++++|+.++|.++.+|+++|.+|
T Consensus         1 ~~~~l~~~a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~   80 (356)
T PLN03088          1 MAKDLEDKAKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTAC   80 (356)
T ss_pred             CcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCccccccccc
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVMDV  160 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~  160 (374)
                      +.+|+|++|+.+|+++++++|++..+..|+.+|..++.......+.....  .++     .+....   +.       ..
T Consensus        81 ~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl~~~~~~~~~~~~~--~~~-----~~~~~~---~~-------~~  143 (356)
T PLN03088         81 MKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEKIAEEEKDLVQPVPS--DLP-----SSVTAP---PV-------EE  143 (356)
T ss_pred             HHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhhhccccccccc--ccc-----cccccc---cc-------cc
Confidence            99999999999999999999999999999999999997653332211110  000     000000   00       00


Q ss_pred             cccccccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEc
Q 017264          161 SNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVL  240 (374)
Q Consensus       161 ~~~ap~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~  240 (374)
                      ....+..++..+++||+||||+++|+|+||+||+.++++.|+|++++|+|+|..++++.|.|.++||++|+|+.|+|+|+
T Consensus       144 ~~~~~~~~~~~~~~r~dWyQs~~~V~i~i~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~  223 (356)
T PLN03088        144 ADATPVVPPSKPKYRHEFYQKPEEVVVTVFAKGVPAENVNVDFGEQILSVVIEVPGEDAYHLQPRLFGKIIPDKCKYEVL  223 (356)
T ss_pred             cccCCCCCCCCCccccceeecCCEEEEEEEecCCChHHcEEEeecCEEEEEEecCCCcceeecccccccccccccEEEEe
Confidence            00111223345579999999999999999999999999999999999999998888889999999999999999999999


Q ss_pred             CcEEEEEEeecCCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHH
Q 017264          241 STKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFF  320 (374)
Q Consensus       241 ~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f  320 (374)
                      ++||||+|+|+++++|++|+........+...... .....|+||+|+.+++|||||+.++++|+++|++||+++||+||
T Consensus       224 ~~Kiei~l~K~~~~~W~~L~~~~~~~~~~~~~~~~-~~~~~~~~p~~~~~~~dWdk~~~~~~~e~~~e~~~g~~~~~~~f  302 (356)
T PLN03088        224 STKIEIRLAKAEPITWASLEYGKGPAVLPKPNVSS-EVSQRPAYPSSKKKKDDWDKLEAEVKKEEKDEKLDGDAALNKFF  302 (356)
T ss_pred             cceEEEEEecCCCCCccccccCCccccccCCCCCc-CcccCCCCCCCCCCCCChhhhhhhhhhhhhccccccchHHHHHH
Confidence            99999999999999999999875432222111111 12446899999877889999999999888888889999999999


Q ss_pred             HHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCccccccCC
Q 017264          321 QEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKWEY  374 (374)
Q Consensus       321 ~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~~~  374 (374)
                      ||||+||||||||||||||+|||||||||||+|||+|+||++||+|||+|||++
T Consensus       303 ~~iY~~~d~d~rram~KSf~eS~gt~lstnw~~v~~~~~e~~pp~g~e~k~~~~  356 (356)
T PLN03088        303 REIYQNADEDTRRAMMKSFVESNGTVLSTNWKEVGSKKIEGSPPDGMELKKWEY  356 (356)
T ss_pred             HHHHhcCCHHHHHHHHHHhhhcCCeEEeccHHHhcCCccccCCCCCCccccCCC
Confidence            999999999999999999999999999999999999999999999999999985

>KOG1309 consensus Suppressor of G2 allele of skp1 [Signal transduction mechanisms]

Probab=100.00  E-value=1.1e-71  Score=463.71  Aligned_cols=195  Identities=59%  Similarity=0.944  Sum_probs=175.2

Q ss_pred             CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeec
Q 017264          172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  251 (374)
Q Consensus       172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  251 (374)
                      +++|||||||.+.|+|+||.++|..+||.|+|..+.|++.+..++|..|.|.+.|||+|+|+.|+|++.++||||+|.|.
T Consensus         2 ~k~r~DwyQt~~~vvIti~~k~v~~~~v~v~~s~~~l~~~~~~~~g~~~~l~~~L~~~I~pe~~s~k~~stKVEI~L~K~   81 (196)
T KOG1309|consen    2 MKIRHDWYQTETSVVITIFAKNVPKEDVNVEISENTLSIVIQLPSGSEYNLQLKLYHEIIPEKSSFKVFSTKVEITLAKA   81 (196)
T ss_pred             CcccceeecCCceEEEEEEecCCCccceeEEeecceEEEEEecCCchhhhhhHHhcccccccceeeEeeeeeEEEEeccc
Confidence            57899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHH
Q 017264          252 EPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDT  331 (374)
Q Consensus       252 ~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~  331 (374)
                      +.++|..|+.-....+.+....    .....+||+++. ++|||+++.|++++|++++.| ||+||+|||+||++|||||
T Consensus        82 ~~irW~~Le~g~~~~~~~~~~v----s~~~s~~Pssk~-~kdWdkl~~e~~~eEe~e~l~-dAAl~~lF~kiY~~addDv  155 (196)
T KOG1309|consen   82 EIIRWESLEKGKGSAVAPKPNV----SSTASSYPSSKP-AKDWDKLEKEEKKEEEDEKLE-DAALNKLFQKIYSDADDDV  155 (196)
T ss_pred             cchhhhhhhcccCccccccccc----ccccccCCCCCc-ccCHHHHHHHhhhhhhccchh-HHHHHHHHHHHHhcCCHHH
Confidence            8999999996222211111100    022348999876 789999999999888888887 8999999999999999999


Q ss_pred             HHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264          332 RRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  372 (374)
Q Consensus       332 kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  372 (374)
                      ||||||||+|||||||||||+|||+|+||++||+|||+|+|
T Consensus       156 rRAM~KSf~ESnGTvLSTnW~eVg~kkve~~PP~gmE~Kk~  196 (196)
T KOG1309|consen  156 RRAMMKSFSESNGTVLSTNWSEVGKKKVETKPPDGMEPKKW  196 (196)
T ss_pred             HHHHHhhhhhcCCeEEeccHHHhccceeeecCCCCCCcCcC
Confidence            99999999999999999999999999999999999999999

>COG5091 SGT1 Suppressor of G2 allele of skp1 and related proteins [General function prediction only]

Probab=100.00  E-value=2.7e-56  Score=394.24  Aligned_cols=347  Identities=23%  Similarity=0.348  Sum_probs=253.8

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCC------CCHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEP------SMSKA   72 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------~~~~~Al~~~~~al~l~p------~~~~a   72 (374)
                      +..++..++--.|+.+|...+.-.|.|..++...+.|+.++          -....|+..+..||.+..      .++-+
T Consensus         2 ~~~L~D~~e~L~~L~~~~~~~~~~~~NL~~l~~~a~~lEk~~~~Fs~~~s~~~~~n~~e~~d~ALm~Ae~r~D~~~IG~~   81 (368)
T COG5091           2 YKALYDEKEPLKALHLYDEILKGSPTNLTALIFKAACLEKLYFGFSDWHSDATMENAKELLDKALMTAEGRGDRSKIGLV   81 (368)
T ss_pred             ccchhcccchHHHhhhhhhhhccCCcceeEEeehhhhHHHHHhhhhhhhcccChhhHHHHHHHHHHhhhccCCcceeeee
Confidence            34677888889999999999999999977666666666554          356789999999998764      25668


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccCCCCCCCCCCccccCCCCCCCCCCCCCc
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTE  152 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~  152 (374)
                      .++++++||.+++|+.|..||..|+.+. -+..+..|..+++.+|.............+..|+..+ .......+...+ 
T Consensus        82 ~~~~~v~~~~ik~Ye~a~~~F~~A~~~~-~~d~L~~We~rLet~L~~~~kkQ~~~Tnk~~I~~vEs-~e~~GD~~~~~S-  158 (368)
T COG5091          82 NFRYFVHFFNIKDYELAQSYFKKAKNLY-VDDTLPLWEDRLETKLNKKNKKQKDSTNKHTIKPVES-IENRGDNNSSHS-  158 (368)
T ss_pred             hhhhHHHhhhHHHHHHHHHHHHHHHHHh-hcccchHHHHHHHHHHhHhhHhhccccCCCCCCchhh-hhccCccccccC-
Confidence            8999999999999999999999999984 4456888999988888766322221111111211110 000001111111 


Q ss_pred             cccccccccccc---cccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCe-eeecccccc
Q 017264          153 DVETVMDVSNEA---AMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEA-YHFQPRLFG  228 (374)
Q Consensus       153 ~~~~~~~~~~~a---p~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~-y~~~~~L~~  228 (374)
                            +.+|..   ..+-.+...++|+|.||...+.|.||.+-+..++|.+-++++.|+|+++...+.. +.+.+.||+
T Consensus       159 ------~~sP~~~~~~~qE~~~~~i~yd~s~Ts~t~~ifiy~~pv~deqVs~~~e~NTL~I~~q~~~~~~~~~~~~~Ly~  232 (368)
T COG5091         159 ------PISPLKIETAPQESPKMEIAYDFSETSDTAIIFIYRPPVGDEQVSPVLEGNTLSISYQPRRLRLWNDITISLYK  232 (368)
T ss_pred             ------CCCccccccCcccCccceeeeeccccceeEEEEEecCCCCccccceeecCCcceeeeeccccchHHHhhhhhhh
Confidence                  222211   1112233467788888888888888888888899999999999999998776544 445679999


Q ss_pred             ccccCceEEEEcCcEEEEEEeecCCCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhh
Q 017264          229 KIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEE  308 (374)
Q Consensus       229 ~I~p~~s~~~v~~~kiei~L~K~~~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e  308 (374)
                      +|+|+.+++++.+.++||+|+|.+.++|..|++............  .+ ....+-|+|+++++||+++..+.+.|  +|
T Consensus       233 ev~P~~~s~k~fsK~~e~~l~KV~~v~W~~l~~~pa~~S~~l~~e--~~-N~~SAt~~s~~k~~Dw~~l~~~~~~d--Ee  307 (368)
T COG5091         233 EVYPDIRSIKSFSKRVEVHLRKVEMVRWGGLNGRPADESSRLSDE--GK-NSDSATPKSSKKQDDWKELMVEDSGD--EE  307 (368)
T ss_pred             hcCcchhhhhhcchhheehhhhhhhhhhcccccCccccccccccc--cc-cccccCCccccccccHHHhhhhhccc--cc
Confidence            999999999999999999999999999999997632210000000  00 11234477788899999998753221  11


Q ss_pred             cccchHHHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264          309 KLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  372 (374)
Q Consensus       309 ~~~~~~~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  372 (374)
                        +| ..+++|||+||++|||||||||||||+|||||+|||||++|++|+|+++||+|||.|+|
T Consensus       308 --~p-s~~dslFqklY~~addDtrRAMmKSf~ESnGTaLSTdW~dVkskt~~t~pPeGMEPK~~  368 (368)
T COG5091         308 --NP-SVMDSLFQKLYQRADDDTRRAMMKSFYESNGTALSTDWDDVKSKTITTEPPEGMEPKHW  368 (368)
T ss_pred             --Cc-hHHHHHHHHHHhcCCchHHHHHHHHHhhcCCceecccHHHhhcCceecCCCCCCCCCCC
Confidence              22 23788999999999999999999999999999999999999999999999999999999

>PF05002 SGS: SGS domain ; InterPro: IPR007699 This domain was thought to be unique to the SGT1-like proteins, but is also found in calcyclin binding proteins

Probab=100.00  E-value=2e-43  Score=262.43  Aligned_cols=81  Identities=58%  Similarity=0.998  Sum_probs=31.9

Q ss_pred             CCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCccccc
Q 017264          292 VDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKK  371 (374)
Q Consensus       292 ~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~  371 (374)
                      +||++|......+.++++.+++++||+|||+||++|||||||||||||+|||||||||||+|||+++|+++||+|||+|+
T Consensus         2 ~~W~~l~~~~~~~~~~d~~d~~a~lm~lfkkiY~~gDDe~KRam~KSf~ES~GT~LSTnW~eV~~~~~~~~pp~g~e~k~   81 (82)
T PF05002_consen    2 KNWDKLTKKKEKEEEDDEEDPEASLMNLFKKIYDNGDDEMKRAMMKSFTESQGTVLSTNWDEVGKKKVEPSPPDGMEWKK   81 (82)
T ss_dssp             ---SSSBHH--------------SHHHHHHHHHTTS-SCHHHHHHHHHHCT-----------------------------
T ss_pred             CChHHccccccccccccccCchHHHHHHHHHHHccCCHHHHHHHHHHHHHcCCcccccchhccchhhhcccccccccccc
Confidence            59999986644445555567778899999999999999999999999999999999999999999999999999999999


Q ss_pred             c
Q 017264          372 W  372 (374)
Q Consensus       372 ~  372 (374)
                      |
T Consensus        82 ~   82 (82)
T PF05002_consen   82 W   82 (82)
T ss_dssp             -
T ss_pred             C
Confidence            9

Sgt1p is a highly conserved eukaryotic protein that is required for both SCF (Skp1p/Cdc53p-Cullin-F-box)-mediated ubiquitination and kinetochore function in yeast and also plays a role in the cAMP pathway. Calcyclin (S100A6) is a member of the S100A family of calcium binding proteins and appears to play a role in cell proliferation [].; PDB: 1X5M_A 2JTT_D.

>KOG3260 consensus Calcyclin-binding protein CacyBP [Signal transduction mechanisms]

Probab=99.96  E-value=7.9e-29  Score=206.45  Aligned_cols=138  Identities=22%  Similarity=0.327  Sum_probs=119.6

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeecc-ccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      .|+|.|++++|.++|.+.||+.++|+|+|+++||.+.++...|++|.+.+ +|+++|.|+.|+.+|.+..|.|.|+|.+.
T Consensus        76 ~ygWDQs~kfVK~yItL~GV~eenVqv~ftp~Sldl~v~dlqGK~y~~~vnnLlk~I~vEks~~kvKtd~v~I~~kkVe~  155 (224)
T KOG3260|consen   76 LYGWDQSNKFVKMYITLEGVDEENVQVEFTPMSLDLKVHDLQGKNYRMIVNNLLKPISVEKSSKKVKTDTVLILCKKVEN  155 (224)
T ss_pred             hcCccccCCeeEEEEEeecccccceeEEecccceeeeeeecCCcceeeehhhhccccChhhcccccccceEEEeehhhhc
Confidence            39999999999999999999999999999999999999999999999999 89999999999999999999999999999


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchHHHHHHHHHHhcCCCHHHHH
Q 017264          254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQEIYADADEDTRR  333 (374)
Q Consensus       254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~~~~~~f~~iY~~~d~d~kr  333 (374)
                      .+|.-|+.-...          ..++..|+|-                      -+.+++++||++|++||.|||+||||
T Consensus       156 ~rwd~Lt~~~Ke----------~Kek~kpsl~----------------------ke~DP~~glmnvmKk~YeDGD~~mK~  203 (224)
T KOG3260|consen  156 TRWDYLTQVEKE----------CKEKEKPSLD----------------------KETDPSEGLMNVMKKIYEDGDDDMKQ  203 (224)
T ss_pred             ccchHHHHHHHH----------HhhccCcccc----------------------ccCChHHHHHHHHHHHHhcccHHHHH
Confidence            999999853221          1112334431                      11235678999999999999999999


Q ss_pred             HhhhhhhhcCC
Q 017264          334 AMKKSFVESNG  344 (374)
Q Consensus       334 am~Ks~~eS~g  344 (374)
                      +|+|+|+||..
T Consensus       204 tIaKAWtesr~  214 (224)
T KOG3260|consen  204 TIAKAWTESRE  214 (224)
T ss_pred             HHHHHHHHhhh
Confidence            99999999964

>cd06488 p23_melusin_like p23_like domain similar to the C-terminal (tail) domain of vertebrate Melusin and related proteins

Probab=99.90  E-value=1e-23  Score=162.89  Aligned_cols=87  Identities=36%  Similarity=0.566  Sum_probs=82.9

Q ss_pred             cCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      .|||||||+++|+|+||+||++++++.|+|++++|+|.+..++|+.|.+.++||++|+|+.|++++.++||||+|+|+++
T Consensus         1 ~R~dW~Qs~~~V~ItI~~k~~~~~~~~v~~~~~~l~v~~~~~~~~~y~~~l~L~~~I~~~~s~~~v~~~kvei~L~K~~~   80 (87)
T cd06488           1 CRHDWHQTGSHVVVSVYAKNSNPELSVVEANSTVLTIHIVFEGNKEFQLDIELWGVIDVEKSSVNMLPTKVEIKLRKAEP   80 (87)
T ss_pred             CCccEeeCCCEEEEEEEECcCCccceEEEecCCEEEEEEECCCCceEEEEeeccceEChhHcEEEecCcEEEEEEEeCCC
Confidence            48999999999999999999999999999999999998877778889999999999999999999999999999999998


Q ss_pred             CCCCccc
Q 017264          254 IQWSSLE  260 (374)
Q Consensus       254 ~~W~~L~  260 (374)
                      .+|++|+
T Consensus        81 ~~W~~Le   87 (87)
T cd06488          81 GSWAKLE   87 (87)
T ss_pred             CcCccCC
Confidence            9999996

Melusin's tail domain interacts with the cytoplasmic domain of beta1-A and beta1-D isoforms of beta1 integrin, it does not bind other integrin beta subunits. Melusin is a muscle-specific protein expressed in skeletal and cardiac muscles but not in smooth muscle or other tissues. It is needed for heart hypertrophy following mechanical overload. The integrin-binding portion of this domain appears to be sequestered in the full length melusin protein, Ca2+ may modulate the protein's conformation exposing this binding site. This group includes Chordc1, also known as Chp-1, which is conserved from vertebrates to humans. Mammalian Chordc1 interacts with the heat shock protein (HSP) Hsp90 and is implicated in circadian and/or homeostatic mechanisms in the brain. The N-terminal portions of proteins belonging to this group contain two cysteine and histidine rich domain (C

>cd06489 p23_CS_hSgt1_like p23_like domain similar to the C-terminal CS (CHORD-SGT1) domain of human (h) Sgt1 and related proteins

Probab=99.87  E-value=5.6e-22  Score=152.40  Aligned_cols=84  Identities=37%  Similarity=0.757  Sum_probs=80.6

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCC
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  256 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  256 (374)
                      ||||++++|+|+|+++|+.++++.|+|++++|+|.+...+|..|.++++||++|+|++|++++++++|||+|+|+++..|
T Consensus         1 dW~Q~~~~V~iti~~k~~~~~~~~v~~~~~~l~~~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W   80 (84)
T cd06489           1 DWYQTESQVVITILIKNVKPEDVSVEFEKRELSATVKLPSGNDYSLKLHLLHPIVPEQSSYKILSTKIEIKLKKTEAIRW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEeCCEEEEEEECCCCCcEEEeeecCceecchhcEEEEeCcEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999987777789999999999999999999999999999999998999


Q ss_pred             Cccc
Q 017264          257 SSLE  260 (374)
Q Consensus       257 ~~L~  260 (374)
                      ++|+
T Consensus        81 ~~Le   84 (84)
T cd06489          81 SKLE   84 (84)
T ss_pred             ccCC
Confidence            9996

hSgt1 is a co-chaperone which has been shown to be elevated in HEp-2 cells as a result of stress conditions such as heat shock. It interacts with the heat shock proteins (HSPs) Hsp70 and Hsp90, and it expression pattern is synchronized with these two Hsps. The interaction with HSP90 has been shown to involve the hSgt1_CS domain, and appears to be required for correct kinetochore assembly and efficient cell division. Some proteins in this subgroup contain a tetratricopeptide repeat (TPR) HSP-binding domain N-terminal to this CS domain, and most proteins in this subgroup contain a Sgt1-specific (SGS) domain C-terminal to the CS domain. The SGS domain interacts with some S100 family proteins. Studies suggest that S100A6 modulates in a Ca2+ dependent manner the interactions of hSgt1 with Hsp90 and Hsp70. The yeast Sgt1 CS domain is not found in this subgroup.

>cd00237 p23 p23 binds heat shock protein (Hsp)90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor

Probab=99.86  E-value=1.7e-21  Score=155.17  Aligned_cols=102  Identities=20%  Similarity=0.357  Sum_probs=89.7

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  253 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  253 (374)
                      .+.|||+.+.|+|+|++++  .++++|+|++++|+|+....+|..|.++++||++|+|++|++++++++|+|+|+|++. 
T Consensus         3 ~v~WaQr~~~V~ltI~v~d--~~d~~v~l~~~~l~f~~~~~~g~~y~~~l~l~~~I~pe~Sk~~v~~r~ve~~L~K~~~~   80 (106)
T cd00237           3 KTLWYDRRDYVFIEFCVED--SKDVKVDFEKSKLTFSCLNGDNVKIYNEIELYDRVDPNDSKHKRTDRSILCCLRKGKEG   80 (106)
T ss_pred             cceeeECCCEEEEEEEeCC--CCCcEEEEecCEEEEEEECCCCcEEEEEEEeecccCcccCeEEeCCceEEEEEEeCCCC
Confidence            4799999999999999997  5899999999999999866577789999999999999999999999999999999975 


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHH
Q 017264          254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEA  299 (374)
Q Consensus       254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~  299 (374)
                      ..|++|+++.                .++.|.     ++|||+|.+
T Consensus        81 ~~WprL~k~~----------------~k~~~l-----k~DfdkW~D  105 (106)
T cd00237          81 VAWPRLTKEK----------------AKPNWL-----SVDFDNWRD  105 (106)
T ss_pred             CCCchhhcCC----------------CCCCcE-----ECcchhccC
Confidence            5899999863                234554     679999984

p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.84  E-value=1.6e-20  Score=171.13  Aligned_cols=120  Identities=31%  Similarity=0.515  Sum_probs=116.4

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      +|+.++.+|+.+++.++|++|+..|++||.++|.++.+|++||.+|.+||+|+.|+.+|+.||.++|.+.++|.|||.+|
T Consensus        80 ~AE~LK~eGN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~  159 (304)
T KOG0553|consen   80 LAESLKNEGNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAY  159 (304)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHH
Confidence            36789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +.+|+|.+|++.|+++++++|++..++..+..++.++...
T Consensus       160 ~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~  199 (304)
T KOG0553|consen  160 LALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEP  199 (304)
T ss_pred             HccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCC
Confidence            9999999999999999999999999999999998888775

>cd06465 p23_hB-ind1_like p23_like domain found in human (h) butyrate-induced transcript 1 (B-ind1) and similar proteins

Probab=99.83  E-value=1.5e-20  Score=151.50  Aligned_cols=86  Identities=22%  Similarity=0.351  Sum_probs=79.9

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-CCCeeeeccccccccccCceEEEEcCcEEEEEEeecC-
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE-  252 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~-  252 (374)
                      -|+||||.+.|+|+|+++++  +++.|+|++++|+|.+... +++.|.+.++||++|+|++|+|++.+++|+|+|+|++ 
T Consensus         2 ~~~W~Qt~~~V~i~i~~~~~--~~~~V~~~~~~l~v~~~~~~~~~~y~~~~~L~~~I~pe~s~~~v~~~kveI~L~K~~~   79 (108)
T cd06465           2 PVLWAQRSDVVYLTIELPDA--KDPKIKLEPTSLSFKAKGGGGGKKYEFDLEFYKEIDPEESKYKVTGRQIEFVLRKKEA   79 (108)
T ss_pred             ceeeeECCCEEEEEEEeCCC--CCcEEEEECCEEEEEEEcCCCCeeEEEEeEhhhhccccccEEEecCCeEEEEEEECCC
Confidence            48999999999999999997  8999999999999998654 5677999999999999999999999999999999999 


Q ss_pred             CCCCCccccC
Q 017264          253 PIQWSSLEFS  262 (374)
Q Consensus       253 ~~~W~~L~~~  262 (374)
                      +..|++|+..
T Consensus        80 ~~~W~~L~~~   89 (108)
T cd06465          80 GEYWPRLTKE   89 (108)
T ss_pred             CCCCcccccC
Confidence            7899999975

hB-ind1 participates in signaling by the small GTPase Rac1. It binds to Rac1 and enhances different Rac1 effects including activation of nuclear factor (NF) kappaB and activation of c-Jun N-terminal kinase (JNK). hB-ind1 also plays a part in the RNA replication and particle production of Hepatitis C virus (HCV) through its interaction with heat shock protein Hsp90, HCV nonstructural protein 5A (NS5A), and the immunophilin FKBP8. hB-ind1 is upregulated in the outer layer of Chinese hamster V79 cells grown as multicell spheroids, versus in the same cells grown as monolayers. This group includes the Saccharomyces cerevisiae Sba1, a co-chaperone of the Hsp90. Sba1 has been shown to be is required for telomere length maintenance, and may modulate telomerase DNA-binding activity.

>cd06468 p23_CacyBP p23_like domain found in proteins similar to Calcyclin-Binding Protein(CacyBP)/Siah-1-interacting protein (SIP)

Probab=99.81  E-value=1.6e-19  Score=141.23  Aligned_cols=86  Identities=27%  Similarity=0.466  Sum_probs=80.3

Q ss_pred             CccccccCCeEEEEEEeCCCCC---CceEEEEeeeEEEEEEEcCCCCeeeeccc-cccccccCceEEEEcCcEEEEEEee
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPA---KNVTVDFGEQILSVSIDVPGEEAYHFQPR-LFGKIIPAKCRYEVLSTKVEIRLAK  250 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~---~~v~v~~~~~~l~v~~~~~~~~~y~~~~~-L~~~I~p~~s~~~v~~~kiei~L~K  250 (374)
                      +|+||||.+.|+|+|+++++..   +++.|+|++++|+|.+...+|.+|.+.+. ||++|+|++|+|++.+++|+|+|+|
T Consensus         3 ~y~W~Qt~~~V~i~i~~~~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~~~~~~~~L~~~I~~e~s~~~~~~~ki~i~L~K   82 (92)
T cd06468           3 KYAWDQSDKFVKIYITLKGVHQLPKENIQVEFTERSFELKVHDLNGKNYRFTINRLLKKIDPEKSSFKVKTDRIVITLAK   82 (92)
T ss_pred             eeeeecCCCEEEEEEEccCCCcCCcccEEEEecCCEEEEEEECCCCcEEEEEehHhhCccCccccEEEEeCCEEEEEEEe
Confidence            6999999999999999999876   99999999999999997767788998884 9999999999999999999999999


Q ss_pred             cCCCCCCccc
Q 017264          251 AEPIQWSSLE  260 (374)
Q Consensus       251 ~~~~~W~~L~  260 (374)
                      +++..|++|+
T Consensus        83 ~~~~~W~~L~   92 (92)
T cd06468          83 KKEKKWESLT   92 (92)
T ss_pred             CCCCccCccC
Confidence            9989999984

CacyBP/SIP interacts with S100A6 (calcyclin), with some other members of the S100 family, with tubulin, and with Siah-1 and Skp-1. The latter two are components of the ubiquitin ligase that regulates beta-catenin degradation. The beta-catenin gene is an oncogene participating in tumorigenesis in many different cancers. Overexpression of CacyBP/SIP, in part through its effect on the expression of beta-catenin, inhibits the proliferation, tumorigenicity, and invasion of gastric cancer cells. CacyBP/SIP is abundant in neurons and neuroblastoma NB2a cells. An extensive re-organization of microtubules accompanies the differentiation of NB2a cells. CacyBP/SIP may contribute to NB2a cell differentiation through binding to and increasing the oligomerization of tubulin. CacyBP/SIP is also implicated in differentiation of erythroid cells, rat neonatal cardiomyocytes

>cd06466 p23_CS_SGT1_like p23_like domain similar to the C-terminal CHORD-SGT1 (CS) domain of Sgt1 (suppressor of G2 allele of Skp1)

Probab=99.81  E-value=1.8e-19  Score=138.46  Aligned_cols=84  Identities=49%  Similarity=0.782  Sum_probs=79.3

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCC
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQW  256 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W  256 (374)
                      ||||+++.|+|+|+++|+.++++.|+|++++|+|.+...++..|.+.++||++|+|++|++++.+++|+|+|+|+++..|
T Consensus         1 dW~Qt~~~v~i~v~~~~~~~~~v~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~vei~L~K~~~~~W   80 (84)
T cd06466           1 DWYQTDTSVTVTIYAKNVDKEDVKVEFNEQSLSVSIILPGGSEYQLELDLFGPIDPEQSKVSVLPTKVEITLKKAEPGSW   80 (84)
T ss_pred             CccccCCEEEEEEEECCCCHHHCEEEEecCEEEEEEECCCCCeEEEecccccccCchhcEEEEeCeEEEEEEEcCCCCCC
Confidence            79999999999999999999999999999999999876656689999999999999999999999999999999998999


Q ss_pred             Cccc
Q 017264          257 SSLE  260 (374)
Q Consensus       257 ~~L~  260 (374)
                      ++|+
T Consensus        81 ~~L~   84 (84)
T cd06466          81 PSLE   84 (84)
T ss_pred             ccCC
Confidence            9985

Sgt1 interacts with multiple protein complexes and has the features of a cochaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. ScSgt1 is needed for the G1/S and G2/M cell-cycle transitions, and for assembly of the core kinetochore complex (CBF3) via activation of Ctf13, the F-box protein. Binding of Hsp82 (a yeast Hsp90 homologue) to ScSgt1, promotes the binding of Sgt1 to Skp1 and of Skp1 to Ctf13. Some proteins in this group have an SGT1-specific (SGS) domain at the extreme C-terminus. The ScSgt1-SGS domain binds adenylate cyclase. The hSgt1-SGS domain interacts with some S100 family proteins, and studies sug

>cd06490 p23_NCB5OR p23_like domain found in NAD(P)H cytochrome b5 (NCB5) oxidoreductase (OR) and similar proteins

Probab=99.80  E-value=2.9e-19  Score=137.80  Aligned_cols=83  Identities=29%  Similarity=0.448  Sum_probs=73.2

Q ss_pred             ccccccCCeEEEEEEeCC--CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc--EEEEEEeec
Q 017264          176 HEFYQKPEEVVVTVFAKG--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST--KVEIRLAKA  251 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~--kiei~L~K~  251 (374)
                      ||||||+++|+|+||+|+  .+..++.+++..++|+|++..+ ++.|.++++|||+|+|+. ++++...  ||||+|+|+
T Consensus         1 ~DWyQt~~~Vtitiy~K~~~~~~~~v~v~~~~~~l~v~~~~~-~~~~~~~~~L~~~I~~~~-~~~~~~~~~KVEI~L~K~   78 (87)
T cd06490           1 YDWFQTDSEVTIVVYTKSKGNPADIVIVDDQQRELRVEIILG-DKSYLLHLDLSNEVQWPC-EVRISTETGKIELVLKKK   78 (87)
T ss_pred             CCceECCCEEEEEEEEcccCCCCccEEEECCCCEEEEEEECC-CceEEEeeeccccCCCCc-EEEEcccCceEEEEEEcC
Confidence            899999999999999885  5567788888999999999877 778999999999998765 8888854  999999999


Q ss_pred             CCCCCCccc
Q 017264          252 EPIQWSSLE  260 (374)
Q Consensus       252 ~~~~W~~L~  260 (374)
                      ++.+|++|.
T Consensus        79 e~~~W~~Lg   87 (87)
T cd06490          79 EPEKWTSLG   87 (87)
T ss_pred             CCCccccCc
Confidence            999999983

NCB5OR is widely expressed in human organs and tissues and is localized in the ER (endoplasmic reticulum). It appears to play a critical role in maintaining viable pancreatic beta cells. Mice homozygous for a targeted knockout (KO) of the gene encoding NCB5OR develop an early-onset nonautoimmune diabetes phenotype with a non-inflammatory beta-cell deficiency. The role of NCB5OR in beta cells may be in maintaining or regulating their redox status. Proteins in this group in addition contain an N-terminal cytochrome b5 domain and a C-terminal cytochrome b5 oxidoreductase domain. The gene encoding NCB5OR has been considered as a positional candidate for type II diabetes and other diabetes subtypes related to B-cell dysfunction, however variation in its coding region does not appear not to be a major contributor to the pathogenesis of these diseases.

>KOG3158 consensus HSP90 co-chaperone p23 [Posttranslational modification, protein turnover, chaperones]

Probab=99.71  E-value=8.3e-18  Score=140.60  Aligned_cols=109  Identities=25%  Similarity=0.337  Sum_probs=93.3

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-
Q 017264          176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-  253 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-  253 (374)
                      .-|+|+.+.|+|+|.+.  ...++.|.+++..|.|+..+ .++..|.++|+||++|+|++|+++++++.|.++|+|++. 
T Consensus        10 v~Waqr~~~vyltv~Ve--d~~d~~v~~e~~~l~fs~k~~~d~~~~~~~ief~~eIdpe~sk~k~~~r~if~i~~K~e~~   87 (180)
T KOG3158|consen   10 VKWAQRRDLVYLTVCVE--DAKDVHVNLEPSKLTFSCKSGADNHKYENEIEFFDEIDPEKSKHKRTSRSIFCILRKKELG   87 (180)
T ss_pred             chhhhhcCeEEEEEEec--cCccceeeccccEEEEEeccCCCceeeEEeeehhhhcCHhhccccccceEEEEEEEccccc
Confidence            47999999999999998  56889999999989988776 566678888999999999999999999999999999987 


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhh
Q 017264          254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKE  307 (374)
Q Consensus       254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~  307 (374)
                      .+|++|++.                +.++.|.     +.|||||++|.++++.+
T Consensus        88 ~~WprLtke----------------K~K~hwL-----kvDFdkW~Dededde~~  120 (180)
T KOG3158|consen   88 EYWPRLTKE----------------KAKLHWL-----KVDFDKWVDEDEDDEAE  120 (180)
T ss_pred             cccchhhhc----------------ccccceE-----Ecchhhccccccccchh
Confidence            899999986                4457776     56999999875444443

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.69  E-value=2.2e-16  Score=153.35  Aligned_cols=116  Identities=33%  Similarity=0.537  Sum_probs=112.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +...+..|+.+|+.|+|..|+.+|++||..+|+++.+|.+||.||.+++++..|+.|++.+++++|++..+|+|.|.+++
T Consensus       358 A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~  437 (539)
T KOG0548|consen  358 AEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALR  437 (539)
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+.+|+.|+.+|+.+++++|++.++..++.+|...+
T Consensus       438 ~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~  473 (539)
T KOG0548|consen  438 AMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQ  473 (539)
T ss_pred             HHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999998876

>PF04969 CS: CS domain; InterPro: IPR017447 The function of the CS domain is unknown

Probab=99.69  E-value=1.4e-16  Score=120.50  Aligned_cols=76  Identities=38%  Similarity=0.602  Sum_probs=69.7

Q ss_pred             CccccccCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264          175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  250 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  250 (374)
                      ||+|+||.+.|+|+|++++..  ++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|
T Consensus         2 ~y~W~Qt~~~V~v~i~~~~~~~~~~dv~v~~~~~~l~v~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~i~i~L~K   79 (79)
T PF04969_consen    2 RYDWYQTDDEVTVTIPVKPVDISKEDVKVDFTDTSLSVSIKSGDGKEYLLEGELFGEIDPDESTWKVKDNKIEITLKK   79 (79)
T ss_dssp             SEEEEEESSEEEEEEE-TTTTSSGGGEEEEEETTEEEEEEEETTSCEEEEEEEBSS-BECCCEEEEEETTEEEEEEEB
T ss_pred             CeEEEECCCEEEEEEEEcCCCCChHHeEEEEEeeEEEEEEEccCCceEEEEEEEeeeEcchhcEEEEECCEEEEEEEC
Confidence            799999999999999997765  8999999999999999987777899999999999999999999999999999998

The CS domain is sometimes found C-terminal to the CHORD domain (IPR007051 from INTERPRO) in metazoan proteins, but occurs separately from the CHORD domain in plants. This association is thought to be indicative of an functional interaction between CS and CHORD domains [].; PDB: 1WGV_A 2KMW_A 2O30_B 1WH0_A 1EJF_A 2RH0_B 1RL1_A 2CR0_A 1WFI_A 2XCM_D ....

>cd06469 p23_DYX1C1_like p23_like domain found in proteins similar to dyslexia susceptibility 1 (DYX1) candidate 1 (C1) protein, DYX1C1

Probab=99.68  E-value=1.6e-16  Score=120.25  Aligned_cols=78  Identities=26%  Similarity=0.346  Sum_probs=73.2

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCCCCCC
Q 017264          178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWS  257 (374)
Q Consensus       178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~~~W~  257 (374)
                      |+|+++.|+|+|+++|+.++++.|+++++.|.|++     ..|.+.++||++|+|++|++++.+++|+|+|.|+++..|+
T Consensus         1 W~Qt~~~v~i~i~~p~v~~~~v~v~~~~~~l~i~~-----~~~~~~~~l~~~I~~e~~~~~~~~~~l~i~L~K~~~~~W~   75 (78)
T cd06469           1 WSQTDEDVKISVPLKGVKTSKVDIFCSDLYLKVNF-----PPYLFELDLAAPIDDEKSSAKIGNGVLVFTLVKKEPGIWE   75 (78)
T ss_pred             CcccCCEEEEEEEeCCCccccceEEEecCEEEEcC-----CCEEEEEeCcccccccccEEEEeCCEEEEEEEeCCCCccc
Confidence            99999999999999999999999999998887765     3699999999999999999999999999999999888999


Q ss_pred             ccc
Q 017264          258 SLE  260 (374)
Q Consensus       258 ~L~  260 (374)
                      +|+
T Consensus        76 ~L~   78 (78)
T cd06469          76 ALC   78 (78)
T ss_pred             ccC
Confidence            986

The human gene encoding this protein is a positional candidate gene for developmental dyslexia (DD), it is located on 15q21.3 by the DYX1 DD susceptibility locus (15q15-21). Independent association studies have reported conflicting results. However, association of short-term memory, which plays a role in DD, with a variant within the DYX1C1 gene has been reported. Most proteins belonging to this group contain a C-terminal tetratricopeptide repeat (TPR) protein binding region.

>cd06493 p23_NUDCD1_like p23_NUDCD1: p23-like NUD (nuclear distribution) C-like domain found in human NUD (nuclear distribution) C domain-containing protein 1, NUDCD1 (also known as CML66), and similar proteins

Probab=99.67  E-value=2.5e-16  Score=121.15  Aligned_cols=81  Identities=16%  Similarity=0.341  Sum_probs=71.7

Q ss_pred             ccccccCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeecCC
Q 017264          176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKAEP  253 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~~~  253 (374)
                      |+|+||.+.|+|+|++ +++.++++.|+|++++|.|.+.  ++ ...+.++||+.|+|++|+|++... +|+|+|.|+++
T Consensus         1 Y~W~Qt~~~V~v~i~~p~~~~~~dv~v~~~~~~l~v~~~--~~-~~~~~g~L~~~I~~d~Stw~i~~~~~l~i~L~K~~~   77 (85)
T cd06493           1 YYWQQTEEDLTLTIRLPEDTTKEDIRIKFLPDHISIALK--DQ-APLLEGKLYSSIDHESSTWIIKENKSLEVSLIKKDE   77 (85)
T ss_pred             CccEEeCCEEEEEEECCCCCChhhEEEEEecCEEEEEeC--CC-CeEEeCcccCcccccCcEEEEeCCCEEEEEEEECCC
Confidence            8999999999999999 5899999999999999999874  23 344788999999999999999765 69999999986


Q ss_pred             -CCCCcc
Q 017264          254 -IQWSSL  259 (374)
Q Consensus       254 -~~W~~L  259 (374)
                       ..|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06493          78 GPTWPEL   84 (85)
T ss_pred             Ccccccc
Confidence             599988

NUDCD1/CML66 is a broadly immunogenic tumor associated antigen, which is highly expressed in a variety of solid tumors and in leukemias. In normal tissues high expression of NUDCD1/CML66 is limited to testis and heart.

>cd06463 p23_like Proteins containing this p23_like domain include p23 and its Saccharomyces cerevisiae (Sc) homolog Sba1

Probab=99.67  E-value=3.9e-16  Score=119.20  Aligned_cols=83  Identities=37%  Similarity=0.636  Sum_probs=78.0

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC-CCC
Q 017264          178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP-IQW  256 (374)
Q Consensus       178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~-~~W  256 (374)
                      |+|+++.|+|+|+++++.++++.|+|++++|+|.+...++..|.++++|+++|+|++|++++.+++|+|+|.|+.+ ..|
T Consensus         1 W~Q~~~~v~i~v~~~~~~~~~~~v~~~~~~l~i~~~~~~~~~~~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~~~~~W   80 (84)
T cd06463           1 WYQTLDEVTITIPLKDVTKKDVKVEFTPKSLTVSVKGGGGKEYLLEGELFGPIDPEESKWTVEDRKIEITLKKKEPGEWW   80 (84)
T ss_pred             CcccccEEEEEEEcCCCCccceEEEEecCEEEEEeeCCCCCceEEeeEccCccchhhcEEEEeCCEEEEEEEECCCCCCC
Confidence            9999999999999999999999999999999999876556789999999999999999999999999999999998 899


Q ss_pred             Cccc
Q 017264          257 SSLE  260 (374)
Q Consensus       257 ~~L~  260 (374)
                      ++|+
T Consensus        81 ~~l~   84 (84)
T cd06463          81 PRLE   84 (84)
T ss_pred             cccC
Confidence            9985

Both are co-chaperones for the heat shock protein (Hsp) 90. p23 binds Hsp90 and participates in the folding of a number of Hsp90 clients, including the progesterone receptor. p23 also has a passive chaperoning activity and in addition may participate in prostaglandin synthesis. Both p23 and Sba1p can regulate telomerase activity. This group includes domains similar to the C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1). Sgt1 interacts with multiple protein complexes and has the features of a co-chaperone. Human (h) Sgt1 interacts with both Hsp70 and Hsp90, and has been shown to bind Hsp90 through its CS domain. Saccharomyces cerevisiae (Sc) Sgt1 is a subunit of both core kinetochore and SCF (Skp1-Cul1-F-box) ubiquitin ligase complexes. Sgt1 is required for pathogen resistance in plants. This group also includes the p23_like domains of

>cd06467 p23_NUDC_like p23_like domain of NUD (nuclear distribution) C and similar proteins

Probab=99.66  E-value=4.7e-16  Score=119.64  Aligned_cols=81  Identities=25%  Similarity=0.352  Sum_probs=74.0

Q ss_pred             ccccccCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC-cEEEEEEeecCC
Q 017264          176 HEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAEP  253 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~~  253 (374)
                      |.|+||.+.|+|+|.+ +++.++++.|+|++++|+|++..   ..+.+...||++|+|++|+|++.+ ++|+|+|+|+++
T Consensus         1 y~W~Qt~~~V~i~i~~~~~~~~~dv~v~~~~~~l~v~~~~---~~~~l~~~L~~~I~~~~s~w~~~~~~~v~i~L~K~~~   77 (85)
T cd06467           1 YSWTQTLDEVTVTIPLPEGTKSKDVKVEITPKHLKVGVKG---GEPLLDGELYAKVKVDESTWTLEDGKLLEITLEKRNE   77 (85)
T ss_pred             CEEEeeCCEEEEEEECCCCCcceeEEEEEEcCEEEEEECC---CCceEcCcccCceeEcCCEEEEeCCCEEEEEEEECCC
Confidence            7999999999999987 56788999999999999999852   357788899999999999999999 999999999997


Q ss_pred             -CCCCcc
Q 017264          254 -IQWSSL  259 (374)
Q Consensus       254 -~~W~~L  259 (374)
                       ..|++|
T Consensus        78 ~~~W~~L   84 (85)
T cd06467          78 GEWWPSL   84 (85)
T ss_pred             Ccccccc
Confidence             799987

Aspergillus nidulas (An) NUDC is needed for nuclear movement. AnNUDC is localized at the hyphal cortex, and binds NUDF at spindle pole bodies (SPBs) and in the cytoplasm at different stages in the cell cycle. At the SPBs it is part of the dynein molecular motor/NUDF complex that regulates microtubule dynamics. Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its ext

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=99.64  E-value=8.6e-17  Score=155.02  Aligned_cols=318  Identities=23%  Similarity=0.193  Sum_probs=209.0

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ||..+.++|+.++..+.|+.|+.+|.+||+++|+++.++.+||.+|++.++|..|+.|+.+|++++|...++|+|+|.++
T Consensus         3 ~a~e~k~ean~~l~~~~fd~avdlysKaI~ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~   82 (476)
T KOG0376|consen    3 SAEELKNEANEALKDKVFDVAVDLYSKAIELDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAV   82 (476)
T ss_pred             hhhhhhhHHhhhcccchHHHHHHHHHHHHhcCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhh--cccCCCCCCCCCCccccCCCCCCCCCCCCCccccccc
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET--GELQKQPLETGPTNVVSTNNVQPATNISSTEDVETVM  158 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~--~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~  158 (374)
                      ..++++.+|+..|+....+.|+++.+.+.+..|+.......  .+.+.+......+.  .+ .. ...            
T Consensus        83 m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~vs~~~fe~ai~~~~~d~~s~~--~~-~~-~~~------------  146 (476)
T KOG0376|consen   83 MALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKIVSEEKFEKAILTPEGDKKSVV--EM-KI-DEE------------  146 (476)
T ss_pred             HhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHHHHHHhhhhcccCCccCCcccc--cc-cc-ccc------------
Confidence            99999999999999999999999999999999999887752  22221111111110  00 00 000            


Q ss_pred             cccccccccCCCCCCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceE-E
Q 017264          159 DVSNEAAMAAPARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCR-Y  237 (374)
Q Consensus       159 ~~~~~ap~~~~~~~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~-~  237 (374)
                      ...   + ........+++--             .++.+.|+..+     . .+.  .  .+.+.-.++..|+...+. +
T Consensus       147 ~~~---~-i~~~y~g~~le~~-------------kvt~e~vk~~~-----~-~~~--~--~~~L~~k~a~~i~~~~~~~~  199 (476)
T KOG0376|consen  147 DMD---L-IESDYSGPVLEDH-------------KVTLEFVKTLM-----E-VFK--N--QKKLPKKYAYSILDLAKTIL  199 (476)
T ss_pred             ccc---c-cccccCCcccccc-------------hhhHHHHHHHH-----H-hhh--c--ccccccccceeeHHHHhhHH
Confidence            000   0 0000111111111             11222221111     0 011  1  123334455556565554 3


Q ss_pred             EEcCcEEEEEEeecCC-CCCCccccCCCcc-CC-cccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhhhhhhcccchH
Q 017264          238 EVLSTKVEIRLAKAEP-IQWSSLEFSKGAV-VP-QRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKEEKEEKLDGDA  314 (374)
Q Consensus       238 ~v~~~kiei~L~K~~~-~~W~~L~~~~~~~-~~-~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~~~~e~~~~~~  314 (374)
                      .+.+..|+|.   ..+ ..|.-.....+.. .. ...... ........|.    ...||..+.....+-.......+..
T Consensus       200 ~~l~~~ve~~---~~~d~~~sv~gd~hGqfydl~nif~l~-g~Ps~t~~yl----fngdfv~rgs~s~e~~~~~~~~kl~  271 (476)
T KOG0376|consen  200 RKLPSLVEIS---VPGDVKISVCGDTHGQFYDLLNIFELN-GLPSETNPYL----FNGDFVDRGSWSVEVILTLFAFKLL  271 (476)
T ss_pred             hcCCcceEee---cCCCceEEecCCccccccchhhhHhhc-CCCCCccccc----ccCceeeecccceeeeeeehhhccc
Confidence            4455677777   334 3444333222111 00 000000 0001112222    1236665544322223334456667


Q ss_pred             HHHHHHHHHhcCCCHHHHHHhhhhhhhcCCeeeecccccccCceeecCCCCCcccccc
Q 017264          315 ALNKFFQEIYADADEDTRRAMKKSFVESNGTVLSTNWKEVGSKKVEGSPPDGMEMKKW  372 (374)
Q Consensus       315 ~~~~~f~~iY~~~d~d~kram~Ks~~eS~gt~lstnw~~v~~~~~~~~~p~g~~~k~~  372 (374)
                      ..|+||--.+.-.+++|.+.|-..+-.+.+++..++|..+   .+..-+|.++.-..|
T Consensus       272 ~pn~~fl~rgn~Es~~m~~iy~f~~e~~~kyte~~~~~f~---~~f~~LPl~~~i~~~  326 (476)
T KOG0376|consen  272 YPNNFFLLRGNHESDNMNKIYGFEGEVKAKYTEEMFNLFS---EVFIWLPLAHLINNK  326 (476)
T ss_pred             CCcceeeccCCccchHHHHHhCCCcchhhhhHHHHHHhhh---hhhccccchhhhcCc
Confidence            7899999999999999999999999999999999999998   677889999887776

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.64  E-value=1.2e-14  Score=123.28  Aligned_cols=117  Identities=13%  Similarity=0.143  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|+|++|+..|.+++..+|.+..+++.+|.++..+|++++|+..|.+++.++|+++.+++++|.++..+
T Consensus        26 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         26 TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++++|+.+|++++.+.|++.......+.++..+...
T Consensus       106 g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~~~l~~~  142 (144)
T PRK15359        106 GEPGLAREAFQTAIKMSYADASWSEIRQNAQIMVDTL  142 (144)
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999888888887776543

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=8.1e-15  Score=142.55  Aligned_cols=114  Identities=30%  Similarity=0.496  Sum_probs=111.7

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      |+..+..+||.+|..|+|+.|+.+|+.||.++|.|..+|.+|+.||..+|+|++|+.+..+.++++|.++++|.|+|.++
T Consensus         1 ~a~e~k~kgnaa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~   80 (539)
T KOG0548|consen    1 KAVELKEKGNAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAAL   80 (539)
T ss_pred             ChhHHHHHHHhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHH
Confidence            67889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      +.+|+|++|+..|.++++.+|+|..+...+..+.
T Consensus        81 ~~lg~~~eA~~ay~~GL~~d~~n~~L~~gl~~a~  114 (539)
T KOG0548|consen   81 FGLGDYEEAILAYSEGLEKDPSNKQLKTGLAQAY  114 (539)
T ss_pred             HhcccHHHHHHHHHHHhhcCCchHHHHHhHHHhh
Confidence            9999999999999999999999999999998887

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=99.59  E-value=2.8e-14  Score=135.45  Aligned_cols=119  Identities=24%  Similarity=0.406  Sum_probs=110.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      |......|+.+|+.|+|..|+..|.+|+..-.+.               ..++.|+|.||+++++|.+|+..|+++|.++
T Consensus       208 A~~~ke~Gn~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~  287 (397)
T KOG0543|consen  208 ADRKKERGNVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD  287 (397)
T ss_pred             HHHHHHhhhHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC
Confidence            4566889999999999999999999999874322               4689999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++.+++||+|.+|..+++|+.|+..|+++++++|+|..+...+.+|..++...
T Consensus       288 ~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~  341 (397)
T KOG0543|consen  288 PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREY  341 (397)
T ss_pred             CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999887776

>cd06494 p23_NUDCD2_like p23-like NUD (nuclear distribution) C-like found in human NUDC domain-containing protein 2 (NUDCD2) and similar proteins

Probab=99.56  E-value=1.7e-14  Score=112.17  Aligned_cols=81  Identities=26%  Similarity=0.516  Sum_probs=72.5

Q ss_pred             CccccccCCeEEEEE-EeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEeecC
Q 017264          175 RHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKAE  252 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i-~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~~  252 (374)
                      +|.|+||.+.|+|+| +.+|+..+++.|.|++++|+|.+.   |.. .++.+||+.|+|++|+|++.+.+ |+|.|.|.+
T Consensus         7 ~y~W~QT~~eV~v~i~lp~~~~~kdv~V~i~~~~l~V~~~---g~~-~l~G~L~~~I~~destWtled~k~l~I~L~K~~   82 (93)
T cd06494           7 WGCWYQTMDEVFIEVNVPPGTRAKDVKCKLGSRDISLAVK---GQE-VLKGKLFDSVVADECTWTLEDRKLIRIVLTKSN   82 (93)
T ss_pred             CcEEEeEcCEEEEEEECCCCCceeeEEEEEEcCEEEEEEC---CEE-EEcCcccCccCcccCEEEEECCcEEEEEEEeCC
Confidence            799999999999999 557899999999999999999984   444 67789999999999999999998 699999986


Q ss_pred             CC---CCCcc
Q 017264          253 PI---QWSSL  259 (374)
Q Consensus       253 ~~---~W~~L  259 (374)
                      ..   .|++|
T Consensus        83 ~~~~~~W~sl   92 (93)
T cd06494          83 RDAGNCWKSL   92 (93)
T ss_pred             CCCCcccccc
Confidence            54   89987

Little is known about the function of the proteins in this subgroup.

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=99.55  E-value=1.9e-13  Score=115.37  Aligned_cols=118  Identities=16%  Similarity=0.124  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+...|..++..|+|++|...|.-++.++|.+...++++|.|+..+|+|.+|+..|.+|+.++|+++.+++++|+|++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L~  115 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYLA  115 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|+...|..+|+.++.+..+++.......+++..|...
T Consensus       116 lG~~~~A~~aF~~Ai~~~~~~~~~~~l~~~A~~~L~~l  153 (157)
T PRK15363        116 CDNVCYAIKALKAVVRICGEVSEHQILRQRAEKMLQQL  153 (157)
T ss_pred             cCCHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHh
Confidence            99999999999999999877777777777777666554

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.54  E-value=8.4e-14  Score=120.24  Aligned_cols=118  Identities=34%  Similarity=0.482  Sum_probs=108.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~l   76 (374)
                      +..+...||.+|.+|+|.+|..-|..||...|..     ..+|.+||.|+++++.++.|+.+|.+||+|+|.+.+++.|+
T Consensus        95 ad~lK~EGN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RR  174 (271)
T KOG4234|consen   95 ADSLKKEGNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERR  174 (271)
T ss_pred             HHHHHHHHHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHH
Confidence            4568889999999999999999999999999987     46899999999999999999999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |.+|.++..|++|+..|.+.++++|....+...+.++..++..
T Consensus       175 Aeayek~ek~eealeDyKki~E~dPs~~ear~~i~rl~~~i~e  217 (271)
T KOG4234|consen  175 AEAYEKMEKYEEALEDYKKILESDPSRREAREAIARLPPKINE  217 (271)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHHhCcchHHHHHHHHhcCHHHHH
Confidence            9999999999999999999999999998888777776555444

>KOG1667 consensus Zn2+-binding protein Melusin/RAR1, contains CHORD domain [General function prediction only]

Probab=99.53  E-value=2.6e-14  Score=126.01  Aligned_cols=91  Identities=33%  Similarity=0.492  Sum_probs=83.8

Q ss_pred             CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264          172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  250 (374)
Q Consensus       172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  250 (374)
                      .+.||||.||+..|+|+||.++..++.-.|+..+..|.|+|.. .++..|.++++|++.|++++|++.+..+||||.|+|
T Consensus       213 ~~cR~Dwhqt~~~Vti~VY~k~~lpe~s~iean~~~l~V~ivf~~gna~fd~d~kLwgvvnve~s~v~m~~tkVEIsl~k  292 (320)
T KOG1667|consen  213 VKCRHDWHQTNGFVTINVYAKGALPETSNIEANGTTLHVSIVFGFGNASFDLDYKLWGVVNVEESSVVMGETKVEISLKK  292 (320)
T ss_pred             ccchhhhhhcCCeEEEEEEeccCCcccceeeeCCeEEEEEEEecCCCceeeccceeeeeechhhceEEeecceEEEEEec
Confidence            4679999999999999999999988888999999999999876 456678899999999999999999999999999999


Q ss_pred             cCCCCCCccccC
Q 017264          251 AEPIQWSSLEFS  262 (374)
Q Consensus       251 ~~~~~W~~L~~~  262 (374)
                      ++++.|.+|+..
T Consensus       293 ~ep~sWa~Le~p  304 (320)
T KOG1667|consen  293 AEPGSWARLEFP  304 (320)
T ss_pred             cCCCCcccccCC
Confidence            999999999975

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.51  E-value=8.5e-13  Score=109.89  Aligned_cols=116  Identities=18%  Similarity=0.301  Sum_probs=109.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++..+|.++.++..+|.+|..+|++.+|+..+.+++.++|.+...++.+|.++..
T Consensus        18 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        18 EQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      +|++++|+..|+++++++|++..+..+..++...+.
T Consensus        98 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~  133 (135)
T TIGR02552        98 LGEPESALKALDLAIEICGENPEYSELKERAEAMLE  133 (135)
T ss_pred             cCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHh
Confidence            999999999999999999999998888888876654

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=99.45  E-value=3e-13  Score=125.26  Aligned_cols=117  Identities=26%  Similarity=0.340  Sum_probs=109.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .++..+||.||++|.|++||.+|++++..+|+|+.++.+||.+|+++++|..|..||..|+.|+....++|-|+|.+-+.
T Consensus        98 SEiKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~  177 (536)
T KOG4648|consen   98 SEIKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARES  177 (536)
T ss_pred             HHHHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            35688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|...+|...|+.+++|.|.+.++...++.+...+..
T Consensus       178 Lg~~~EAKkD~E~vL~LEP~~~ELkK~~a~i~Sl~E~  214 (536)
T KOG4648|consen  178 LGNNMEAKKDCETVLALEPKNIELKKSLARINSLRER  214 (536)
T ss_pred             HhhHHHHHHhHHHHHhhCcccHHHHHHHHHhcchHhh
Confidence            9999999999999999999999888887776654433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.42  E-value=5.7e-12  Score=119.56  Aligned_cols=108  Identities=21%  Similarity=0.149  Sum_probs=102.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++.++.+|..+...|++..|+..|++++.++|+++.+|+.+|.+|..+|++++|+..|+++++++|++..+++++|.+++
T Consensus        64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~  143 (296)
T PRK11189         64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALY  143 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      ..|++++|+.+|+++++++|+++....|
T Consensus       144 ~~g~~~eA~~~~~~al~~~P~~~~~~~~  171 (296)
T PRK11189        144 YGGRYELAQDDLLAFYQDDPNDPYRALW  171 (296)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            9999999999999999999999753333

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.41  E-value=2.2e-12  Score=124.31  Aligned_cols=118  Identities=24%  Similarity=0.398  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      |.++..+||-+|.+|+|++||++|++||.++|+.+.+|.+|+.||..+|++++.++++.+|++++|+..++++|++.++.
T Consensus       115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E  194 (606)
T KOG0547|consen  115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHE  194 (606)
T ss_pred             HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHh
Q 017264           82 KLEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~-p~~~~~~~~~~~~~~~l~~  119 (374)
                      .+|++++|+....-..-+. =+|..+...+.++..++..
T Consensus       195 ~lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~  233 (606)
T KOG0547|consen  195 QLGKFDEALFDVTVLCILEGFQNASIEPMAERVLKKQAM  233 (606)
T ss_pred             hhccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHHHHH
Confidence            9999999998887433222 2334444445555444433

>cd06492 p23_mNUDC_like p23-like NUD (nuclear distribution) C-like domain of mammalian(m) NUDC and similar proteins

Probab=99.39  E-value=2.4e-12  Score=99.09  Aligned_cols=82  Identities=22%  Similarity=0.280  Sum_probs=72.1

Q ss_pred             ccccccCCeEEEEEEeCC---CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeec
Q 017264          176 HEFYQKPEEVVVTVFAKG---IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  251 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~---~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  251 (374)
                      |.|.||.+.|+|+|.++.   +...++.|+|+.++|+|.++   |..+.++.+||++|++++|+|.+.+. .|+|+|.|.
T Consensus         1 Y~W~QT~~ev~v~v~l~~~~~~~~kdv~v~i~~~~l~v~~~---g~~~~i~G~L~~~V~~des~Wtled~~~l~i~L~K~   77 (87)
T cd06492           1 YRWTQTLSEVELKVPFKVSFRLKGKDVVVDIQRKHLKVGLK---GQPPIIDGELYNEVKVEESSWLIEDGKVVTVNLEKI   77 (87)
T ss_pred             CccEeecCEEEEEEECCCCCCccceEEEEEEecCEEEEEEC---CCceEEeCcccCcccccccEEEEeCCCEEEEEEEEC
Confidence            789999999999998742   67899999999999999885   44567899999999999999999874 699999999


Q ss_pred             CC-CCCCccc
Q 017264          252 EP-IQWSSLE  260 (374)
Q Consensus       252 ~~-~~W~~L~  260 (374)
                      .+ ..|++|.
T Consensus        78 ~~~~wW~~l~   87 (87)
T cd06492          78 NKMEWWSRLV   87 (87)
T ss_pred             CCCccccccC
Confidence            76 6999873

Mammalian(m) NUDC associates both with the dynein complex and also with an anti-inflammatory enzyme, platelet activating factor acetylhydrolase I, PAF-AH(I) complex, through binding mNUDF, the regulatory beta subunit of PAF-AH(I). mNUDC is important for cell proliferation both in normal and tumor tissues. Its expression is elevated in various cell types undergoing mitosis or stimulated to proliferate, with high expression levels observed in leukemic cells and tumors. For a leukemic cell line, human NUDC was shown to activate the thrombopoietin (TPO) receptor (Mpl) by binding to its extracellular domain, and promoting cell proliferation and differentiation.

>cd06495 p23_NUDCD3_like p23-like NUD (nuclear distribution) C-like domain found in human NUDC domain-containing protein 3 (NUDCD3) and similar proteins

Probab=99.38  E-value=3.1e-12  Score=100.93  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=75.5

Q ss_pred             CccccccCCeEEEEEEeC-CC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEeec
Q 017264          175 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAKA  251 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K~  251 (374)
                      +|.|.||.+.|+|+|.++ ++ ..+++.|+|+.++|.|.+...++..-.++.+||+.|+++.|+|.+.+. .|.|+|.|.
T Consensus         6 ~Y~WtQTl~eV~V~i~lp~~~~~~kdv~v~i~~~~l~v~~~~~~~~~~~i~G~L~~~V~~des~Wtled~~~l~I~L~K~   85 (102)
T cd06495           6 NYTWSQDYTDVEVRVPVPKDVVKGRQVSVDLQSSSIRVSVRDGGGEKVLMEGEFTHKINTENSLWSLEPGKCVLLSLSKC   85 (102)
T ss_pred             ceEEEeECCeEEEEEECCCCCccceEEEEEEEcCEEEEEEecCCCCceEEeCcccCcccCccceEEEeCCCEEEEEEEEC
Confidence            799999999999999886 43 579999999999999999744343345888999999999999999985 589999999


Q ss_pred             CCCCCCccccC
Q 017264          252 EPIQWSSLEFS  262 (374)
Q Consensus       252 ~~~~W~~L~~~  262 (374)
                      ....|++|-..
T Consensus        86 ~~~wW~~v~~g   96 (102)
T cd06495          86 SEVWWNAVLKG   96 (102)
T ss_pred             CCcccchhhCC
Confidence            77789999753

Little is known about the function of the proteins in this subgroup.

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=99.37  E-value=3.1e-12  Score=121.17  Aligned_cols=116  Identities=28%  Similarity=0.512  Sum_probs=108.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      .....||.+|++|+|..|.+.|+.||.++|++    +.+|.+||.++.++|+..+|+.+++.|+.|++...++++++|.|
T Consensus       251 ~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c  330 (486)
T KOG0550|consen  251 VKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANC  330 (486)
T ss_pred             HHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999988    57899999999999999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +..+++|++|++.|+++.++..+ ..+++.+.+++..|++.
T Consensus       331 ~l~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A~~aLkkS  370 (486)
T KOG0550|consen  331 HLALEKWEEAVEDYEKAMQLEKD-CEIRRTLREAQLALKKS  370 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccc-cchHHHHHHHHHHHHHh
Confidence            99999999999999999999887 77778888877777754

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.36  E-value=2.7e-11  Score=108.14  Aligned_cols=108  Identities=18%  Similarity=0.170  Sum_probs=98.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHccC--HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQAS-IKLQN--FTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~-~~l~~--~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      +.+...|..+...|+|+.|+..|.+++.++|+++.++..+|.++ ...|+  +.+|++.++++++++|++..+++.+|.+
T Consensus        74 ~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~  153 (198)
T PRK10370         74 EQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASD  153 (198)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHH
Confidence            45788999999999999999999999999999999999999985 67777  5999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      ++.+|+|++|+.+|++++++.|.+..-...+
T Consensus       154 ~~~~g~~~~Ai~~~~~aL~l~~~~~~r~~~i  184 (198)
T PRK10370        154 AFMQADYAQAIELWQKVLDLNSPRVNRTQLV  184 (198)
T ss_pred             HHHcCCHHHHHHHHHHHHhhCCCCccHHHHH
Confidence            9999999999999999999998776544444

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=99.32  E-value=5.8e-11  Score=95.91  Aligned_cols=107  Identities=15%  Similarity=0.109  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~   75 (374)
                      ++.++..|..++..|+|++|+..|.+++...|.+   ..+++.+|.++.+.|++++|+..++.++...|++   +.+++.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4678999999999999999999999999998876   5789999999999999999999999999998874   678999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      +|.++..+|++++|+.+|.+++...|++.....
T Consensus        82 ~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~  114 (119)
T TIGR02795        82 LGMSLQELGDKEKAKATLQQVIKRYPGSSAAKL  114 (119)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence            999999999999999999999999999876443

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.29  E-value=8.8e-12  Score=123.13  Aligned_cols=118  Identities=19%  Similarity=0.173  Sum_probs=97.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++++++.|+.+-..+.|+.|+..|.+|+.+.|+++.++.++|.+|+.+|..+-||..|++||.+.|+++.+|.++|.++-
T Consensus       252 ~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALk  331 (966)
T KOG4626|consen  252 LDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALK  331 (966)
T ss_pred             hHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHH
Confidence            46778888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ..|+..+|..||.+++.+.|.+.+....++.+..+...
T Consensus       332 d~G~V~ea~~cYnkaL~l~p~hadam~NLgni~~E~~~  369 (966)
T KOG4626|consen  332 DKGSVTEAVDCYNKALRLCPNHADAMNNLGNIYREQGK  369 (966)
T ss_pred             hccchHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcc
Confidence            88888888888888888888888877777776655433

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.27  E-value=8.3e-11  Score=122.63  Aligned_cols=117  Identities=17%  Similarity=0.202  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.++|.++|.+...++.+|.+|..+|++++|+.+|++++.++|+++.+++.+|.+++.
T Consensus       332 ~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~  411 (615)
T TIGR00990       332 IALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFI  411 (615)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|++++|+.+|++++.++|++......++.+...++.
T Consensus       412 ~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       412 KGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             cCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHHCCC
Confidence            9999999999999999999998877777666655444

>PRK15331 chaperone protein SicA; Provisional

Probab=99.27  E-value=1.3e-10  Score=98.72  Aligned_cols=116  Identities=11%  Similarity=0.024  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+...|..+|..|+|++|..+|.-.+..++.++.+++.+|.|+..+++|++|+..|..|..++++++...|..|+|++.
T Consensus        38 e~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~  117 (165)
T PRK15331         38 DGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLL  117 (165)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|+...|+.+|+.++. .|.+..++.........+..
T Consensus       118 l~~~~~A~~~f~~a~~-~~~~~~l~~~A~~~L~~l~~  153 (165)
T PRK15331        118 MRKAAKARQCFELVNE-RTEDESLRAKALVYLEALKT  153 (165)
T ss_pred             hCCHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHHc
Confidence            9999999999999988 56666555554444444444

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.26  E-value=1.2e-10  Score=121.44  Aligned_cols=118  Identities=14%  Similarity=0.142  Sum_probs=111.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.++|..+|+++.+++.+|.+|+.+|++++|+.+|++++.++|++..+++.+|.+++.
T Consensus       366 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~~~~~~~~la~~~~~  445 (615)
T TIGR00990       366 QSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPDFIFSHIQLGVTQYK  445 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCccCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+..|++++.+.|++..+...++.+...++..
T Consensus       446 ~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~  483 (615)
T TIGR00990       446 EGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKF  483 (615)
T ss_pred             CCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCH
Confidence            99999999999999999999999888888877766554

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.25  E-value=4.2e-11  Score=118.38  Aligned_cols=112  Identities=17%  Similarity=0.183  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      |....+.|..+.++|++++|+.+|.+||++.|..+.+|.++|..|-.+|+..+|+++|.+||.++|.+++++-++|.+|.
T Consensus       388 aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~k  467 (966)
T KOG4626|consen  388 AAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYK  467 (966)
T ss_pred             hhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhh
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..|+..+|+..|+.++.+.|+.++..-.+.-|
T Consensus       468 DsGni~~AI~sY~~aLklkPDfpdA~cNllh~  499 (966)
T KOG4626|consen  468 DSGNIPEAIQSYRTALKLKPDFPDAYCNLLHC  499 (966)
T ss_pred             ccCCcHHHHHHHHHHHccCCCCchhhhHHHHH
Confidence            99999999999999999999988655444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=99.24  E-value=1.7e-10  Score=87.09  Aligned_cols=99  Identities=32%  Similarity=0.493  Sum_probs=94.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|++.+|+..+.++++..|.+..++..+|.+|...+++++|+..+..++.+.|.+..+++.+|.++...
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC
Q 017264           84 EEYETAKVALEKGASLAPG  102 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~  102 (374)
                      |+++.|...|.++++..|.
T Consensus        82 ~~~~~a~~~~~~~~~~~~~  100 (100)
T cd00189          82 GKYEEALEAYEKALELDPN  100 (100)
T ss_pred             HhHHHHHHHHHHHHccCCC
Confidence            9999999999999988763

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.20  E-value=7.2e-11  Score=86.59  Aligned_cols=66  Identities=35%  Similarity=0.519  Sum_probs=34.6

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCC
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAP  101 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~p  101 (374)
                      +..+..+|.+++.+|+|++|+.+|.++++++|+++.+|+++|.++..+| ++.+|+.+|+++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            4445555555555555555555555555555555555555555555555 45555555555555544

...

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.19  E-value=4.2e-11  Score=106.28  Aligned_cols=99  Identities=29%  Similarity=0.485  Sum_probs=95.6

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      |++.+..+|+.+|..+.|..||..|.+||-++|..+.+|.+||.||+++++++.+..++.+|+++.|+...++|.+|.++
T Consensus         9 ~a~qlkE~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~   88 (284)
T KOG4642|consen    9 SAEQLKEQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWL   88 (284)
T ss_pred             HHHHHHhccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhc
Q 017264           81 MKLEEYETAKVALEKGASL   99 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l   99 (374)
                      .....|.+|+.+++++..+
T Consensus        89 l~s~~~~eaI~~Lqra~sl  107 (284)
T KOG4642|consen   89 LQSKGYDEAIKVLQRAYSL  107 (284)
T ss_pred             HhhccccHHHHHHHHHHHH
Confidence            9999999999999999655

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=99.19  E-value=8.8e-11  Score=86.12  Aligned_cols=66  Identities=30%  Similarity=0.502  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEP   67 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p   67 (374)
                      |..+...|..++..|+|++|+..|+++|+.+|+++.+++++|.||.++| ++.+|+.+++++++++|
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P   69 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP   69 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence            5678999999999999999999999999999999999999999999999 79999999999999998

...

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=99.18  E-value=6.7e-10  Score=96.86  Aligned_cols=110  Identities=19%  Similarity=0.217  Sum_probs=96.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..++..|..++..|+|++|+.+|.+++...++.   ..++..+|.+|.++|++++|+..+.+++.+.|.+..++..+|.
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~  114 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence            4467899999999999999999999999987653   5789999999999999999999999999999999999999999


Q ss_pred             HHHHhcC--------------HHHHHHHHHHHHhcCCCCh-hHHHHHH
Q 017264           79 ACMKLEE--------------YETAKVALEKGASLAPGDS-RFTNLIK  111 (374)
Q Consensus        79 ~~~~lg~--------------~~eA~~~~~~a~~l~p~~~-~~~~~~~  111 (374)
                      ++..+|+              +.+|+.++++++.++|++- .+..|+.
T Consensus       115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~  162 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNNYIEAQNWLK  162 (172)
T ss_pred             HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchhHHHHHHHHH
Confidence            9999888              6888999999999999874 3444443

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.16  E-value=2.2e-10  Score=110.77  Aligned_cols=119  Identities=23%  Similarity=0.265  Sum_probs=107.6

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ||+.+...|-.+|-.|++-.|-..++.+|.++|.+..+|+.||.+|...++-++...+|.+|..++|.++.+||.+|+++
T Consensus       325 ~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~  404 (606)
T KOG0547|consen  325 MAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNSLYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMR  404 (606)
T ss_pred             HHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccchHHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHH
Confidence            68889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +-+++|++|+..|++++.++|++.-....+.-+..+..+
T Consensus       405 flL~q~e~A~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k  443 (606)
T KOG0547|consen  405 FLLQQYEEAIADFQKAISLDPENAYAYIQLCCALYRQHK  443 (606)
T ss_pred             HHHHHHHHHHHHHHHHhhcChhhhHHHHHHHHHHHHHHH
Confidence            999999999999999999999987544444444444433

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=2e-10  Score=106.43  Aligned_cols=101  Identities=27%  Similarity=0.435  Sum_probs=91.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      |+.+...||.+|+.++|..|+..|+++|...-.+    +.+|.+||.|.+-+|+|..||.|+.+|+.++|.+.++++|=|
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            6778999999999999999999999999984333    678999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           78 TACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        78 ~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .|++.++++++|+.+++.+++.+-.
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~d~e  185 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQIDDE  185 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhhhHH
Confidence            9999999988888888877666543

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.15  E-value=2.7e-10  Score=105.98  Aligned_cols=103  Identities=21%  Similarity=0.278  Sum_probs=98.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.....|+.++.+|+|..|+.+|..|++.+|++..+++.||.+|+.+|+-..|+.++.++|++.|++..+...+|.++..
T Consensus        39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK  118 (504)
T KOG0624|consen   39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLK  118 (504)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhh
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChh
Q 017264           83 LEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +|++++|...|...+..+|++..
T Consensus       119 ~Gele~A~~DF~~vl~~~~s~~~  141 (504)
T KOG0624|consen  119 QGELEQAEADFDQVLQHEPSNGL  141 (504)
T ss_pred             cccHHHHHHHHHHHHhcCCCcch
Confidence            99999999999999999996653

>PRK12370 invasion protein regulator; Provisional

Probab=99.15  E-value=7.6e-10  Score=113.97  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=56.9

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 017264           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL   93 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~   93 (374)
                      ..+++++|+..+.+|+.++|+++.++..+|.++..+|++++|+..|++|++++|+++.+|+.+|.+|..+|++++|+..|
T Consensus       316 ~~~~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~  395 (553)
T PRK12370        316 KQNAMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTI  395 (553)
T ss_pred             cchHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            34455666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             HHHHhcCCCChh
Q 017264           94 EKGASLAPGDSR  105 (374)
Q Consensus        94 ~~a~~l~p~~~~  105 (374)
                      +++++++|.+..
T Consensus       396 ~~Al~l~P~~~~  407 (553)
T PRK12370        396 NECLKLDPTRAA  407 (553)
T ss_pred             HHHHhcCCCChh
Confidence            666666665543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.14  E-value=9.8e-10  Score=118.88  Aligned_cols=114  Identities=14%  Similarity=0.043  Sum_probs=101.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+.+.|..+.+.|++++|+..|.+++.++|+++.++.++|.++..+|++++|+..|.+++.++|+++.+++++|.++..
T Consensus       610 ~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~  689 (987)
T PRK09782        610 NAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQR  689 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      +|++++|+.+|++++.++|++..+...+..+..+
T Consensus       690 lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~  723 (987)
T PRK09782        690 LDDMAATQHYARLVIDDIDNQALITPLTPEQNQQ  723 (987)
T ss_pred             CCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHH
Confidence            9999999999999999999987766555544433

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=99.14  E-value=1.1e-10  Score=89.24  Aligned_cols=82  Identities=27%  Similarity=0.406  Sum_probs=73.3

Q ss_pred             hccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH
Q 017264           14 IDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV   91 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~   91 (374)
                      ..|+|+.|+.+|++++..+|.  +..+++.+|.||+++|+|.+|+..+++ +..++.+...++.+|.|++.+|+|++|+.
T Consensus         1 ~~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    1 DQGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             HTT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CCccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            368999999999999999995  466788899999999999999999999 88888888999999999999999999999


Q ss_pred             HHHHH
Q 017264           92 ALEKG   96 (374)
Q Consensus        92 ~~~~a   96 (374)
                      .|+++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            99875

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.14  E-value=7.7e-10  Score=115.51  Aligned_cols=115  Identities=12%  Similarity=0.000  Sum_probs=93.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++.++..|......|.|++|+.++..++.+.|++..++.++|.++.+++++++|+..+++++..+|+++.+++.+|.++.
T Consensus        86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~  165 (694)
T PRK15179         86 ELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWD  165 (694)
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence            35677788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .+|+|++|+.+|++++..+|++...+..++.+.+.
T Consensus       166 ~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        166 EIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            88888888888888888777777666666665554

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.13  E-value=8.9e-10  Score=97.66  Aligned_cols=115  Identities=17%  Similarity=0.042  Sum_probs=101.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +......|..++..||+..|...+++||+.+|++..++..||..|.++|+.+.|-+.|++|+.++|++++++-+.|--++
T Consensus        35 a~arlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC  114 (250)
T COG3063          35 AKARLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhc--CCCChhHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASL--APGDSRFTNLIKECEER  116 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l--~p~~~~~~~~~~~~~~~  116 (374)
                      .+|+|++|...|++++..  .+.......++.-|..+
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~  151 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALK  151 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhh
Confidence            999999999999998853  33334455556666554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.13  E-value=4.3e-10  Score=95.23  Aligned_cols=97  Identities=21%  Similarity=0.208  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      -..+|+++++++|++   +..+|.++..+|++++|+..|.+++.++|.+..+|+.+|.++..+|++++|+.+|++++.++
T Consensus        12 ~~~~~~~al~~~p~~---~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~   88 (144)
T PRK15359         12 PEDILKQLLSVDPET---VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD   88 (144)
T ss_pred             HHHHHHHHHHcCHHH---HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            346799999999885   56789999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCChhHHHHHHHHHHHHHhh
Q 017264          101 PGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus       101 p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++......++.|...+++.
T Consensus        89 p~~~~a~~~lg~~l~~~g~~  108 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEP  108 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCH
Confidence            99999999999888776665

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.12  E-value=3.8e-10  Score=112.72  Aligned_cols=118  Identities=19%  Similarity=0.272  Sum_probs=113.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .+++..|..|++.+.|+.|.-+|.+|+.++|.+..+++..|..|.++|+.++|++.+++|+.++|.++...|.+|.+++.
T Consensus       490 nAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~~il~~  569 (638)
T KOG1126|consen  490 NAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRASILFS  569 (638)
T ss_pred             HHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHHHHHHh
Confidence            36788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++|++|+..|++..++.|++..+...++++..++++.
T Consensus       570 ~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~  607 (638)
T KOG1126|consen  570 LGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNT  607 (638)
T ss_pred             hcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccc
Confidence            99999999999999999999999999999999988775

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.12  E-value=2.3e-09  Score=95.58  Aligned_cols=115  Identities=19%  Similarity=0.159  Sum_probs=95.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..+...|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.+.|.+..+++.+|.+++
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  110 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLC  110 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999899999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC--CCChhHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLA--PGDSRFTNLIKECEER  116 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~--p~~~~~~~~~~~~~~~  116 (374)
                      ..|++++|+..|.+++...  +........++.+...
T Consensus       111 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  147 (234)
T TIGR02521       111 QQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALK  147 (234)
T ss_pred             HcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHH
Confidence            9999999999999988753  2333344444444433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.11  E-value=1.4e-09  Score=111.95  Aligned_cols=118  Identities=15%  Similarity=0.037  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..+...|++++|+.+|.+|++++|+++.+++.+|.+|..+|++++|+..++++++++|.++.+++.++.+++.
T Consensus       339 ~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~  418 (553)
T PRK12370        339 QALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYY  418 (553)
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHh
Confidence            45677899999999999999999999999999999999999999999999999999999999999998888888888999


Q ss_pred             hcCHHHHHHHHHHHHhcC-CCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLA-PGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~-p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.++++++... |+++.....++.+...+++.
T Consensus       419 ~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~  457 (553)
T PRK12370        419 HTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKH  457 (553)
T ss_pred             ccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCH
Confidence            999999999999999775 77888888888887776665

>cd00298 ACD_sHsps_p23-like This domain family includes the alpha-crystallin domain (ACD) of alpha-crystallin-type small heat shock proteins (sHsps) and a similar domain found in p23-like proteins

Probab=99.10  E-value=2.5e-10  Score=85.28  Aligned_cols=73  Identities=26%  Similarity=0.374  Sum_probs=67.6

Q ss_pred             ccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-------CCCeeeeccccccccccCceEEEEcCcEEEEEEee
Q 017264          178 FYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAK  250 (374)
Q Consensus       178 W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-------~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K  250 (374)
                      |+|+++.|+|+|.++|+.++++.|.+.++.|.|++...       .+..|.+.+.|+++|+++.+++.+.+.+|+|.|.|
T Consensus         1 ~~q~~~~v~i~i~~~~~~~~~i~v~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~L~~~i~~~~~~~~~~~~~l~i~l~K   80 (80)
T cd00298           1 WYQTDDEVVVTVDLPGVKKEDIKVEVEDNVLTISGKREEEEERERSYGEFERSFELPEDVDPEKSKASLENGVLEITLPK   80 (80)
T ss_pred             CEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcCCCcceEeeeeEEEEEECCCCcCHHHCEEEEECCEEEEEEcC
Confidence            99999999999999999999999999999999998654       24579999999999999999999999999999987

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is this ACD. sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps. p23 is a cochaperone of the Hsp90 chaperoning pathway. It binds Hsp90 and participates in the folding of a number of Hsp90 clients including the progesterone receptor. p23 also has a passive chaperoning activity. p23 in addition may act as the cytosolic prostaglandin E2 synthase. Included in this family is the p23-like C-terminal CHORD-SGT1 (CS) domain of suppressor of G2 allele of Skp1 (Sgt1) and the p23-like domains of human butyrate-induced transcript 1 (hB-ind

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.09  E-value=1.9e-09  Score=96.30  Aligned_cols=106  Identities=14%  Similarity=0.135  Sum_probs=97.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HHhcC--HHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MKLEE--YETAKV   91 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~-~~lg~--~~eA~~   91 (374)
                      .++.++++..|.++|..+|++...|..+|.+|..+|++++|+..|++|++++|+++.+++.+|.++ +..|+  +.+|..
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            567799999999999999999999999999999999999999999999999999999999999985 67788  599999


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           92 ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .|+++++++|++......++.+...++..
T Consensus       132 ~l~~al~~dP~~~~al~~LA~~~~~~g~~  160 (198)
T PRK10370        132 MIDKALALDANEVTALMLLASDAFMQADY  160 (198)
T ss_pred             HHHHHHHhCCCChhHHHHHHHHHHHcCCH
Confidence            99999999999999988888877766554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.08  E-value=1.1e-09  Score=105.35  Aligned_cols=113  Identities=19%  Similarity=0.269  Sum_probs=81.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      .||.+-..++.+.|+.+|.+||+++|....+|.-+|+-|..+++...|++.|++|+.++|.+-.+||.+|++|.-++...
T Consensus       336 IaNYYSlr~eHEKAv~YFkRALkLNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  336 IANYYSLRSEHEKAVMYFKRALKLNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             ehhHHHHHHhHHHHHHHHHHHHhcCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchH
Confidence            45666666677777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      =|+.+|++++.+-|.|+.++..++.|..++.+.
T Consensus       416 YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~  448 (559)
T KOG1155|consen  416 YALYYFQKALELKPNDSRLWVALGECYEKLNRL  448 (559)
T ss_pred             HHHHHHHHHHhcCCCchHHHHHHHHHHHHhccH
Confidence            777777777777777777777777777666665

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.08  E-value=2.7e-10  Score=112.18  Aligned_cols=99  Identities=21%  Similarity=0.293  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      -....|..|+..|+|+.|+++|+.||...|++..+|.++|..+..-.+.++|+..|.+|++|.|++.++.|++|++|.++
T Consensus       432 vQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNl  511 (579)
T KOG1125|consen  432 VQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNL  511 (579)
T ss_pred             HHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhh
Confidence            34568999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC
Q 017264           84 EEYETAKVALEKGASLAPG  102 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~  102 (374)
                      |.|.+|+..|-.++.+.+.
T Consensus       512 G~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  512 GAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             hhHHHHHHHHHHHHHhhhc
Confidence            9999999999999998765

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.07  E-value=2.7e-09  Score=102.76  Aligned_cols=117  Identities=17%  Similarity=0.145  Sum_probs=111.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+--.|..++..++-..|++.|++|++++|.+..+|+.+|++|.-++.+.-|+-+|++|+.+.|+++..|..+|.||..+
T Consensus       366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl  445 (559)
T KOG1155|consen  366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKL  445 (559)
T ss_pred             HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHh
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++.++|+.||.+++.+.-.+..+...++++.+++...
T Consensus       446 ~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~  482 (559)
T KOG1155|consen  446 NRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL  482 (559)
T ss_pred             ccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence            9999999999999999988888999999999888775

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.07  E-value=4e-09  Score=96.25  Aligned_cols=106  Identities=25%  Similarity=0.245  Sum_probs=97.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~---a~~~   75 (374)
                      ++.++..|..++..|+|+.|+..|.+++...|.++   .+++.+|.+|..+|++++|+..++++++..|+++.   +++.
T Consensus        33 ~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~  112 (235)
T TIGR03302        33 AEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYL  112 (235)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHH
Confidence            45789999999999999999999999999999876   57899999999999999999999999999998765   7999


Q ss_pred             HHHHHHHh--------cCHHHHHHHHHHHHhcCCCChhHH
Q 017264           76 KATACMKL--------EEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        76 lg~~~~~l--------g~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +|.+++..        |++++|+..|++++..+|++....
T Consensus       113 ~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~  152 (235)
T TIGR03302       113 RGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAP  152 (235)
T ss_pred             HHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHH
Confidence            99999987        899999999999999999987543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.07  E-value=2.8e-09  Score=109.63  Aligned_cols=117  Identities=14%  Similarity=0.131  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.++.+||.+|..|++++|..++.++|+++|.++.+|+.+|.+|.++|+.++|+..+-.|..++|++.+.|.+++.....
T Consensus       140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~  219 (895)
T KOG2076|consen  140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQ  219 (895)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHh
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|.+.+|..||.++++++|.+..+......+..+.+.
T Consensus       220 ~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~  256 (895)
T KOG2076|consen  220 LGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGD  256 (895)
T ss_pred             cccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCh
Confidence            9999999999999999999998766666555554443

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.06  E-value=8.2e-09  Score=97.97  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=87.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-----------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-----------   70 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-----------   70 (374)
                      +..+...|..+...|+|++|+..|+++|+++|++..++.++|.+|+..|++++|+++++++++++|+++           
T Consensus        98 ~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~  177 (296)
T PRK11189         98 ADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAES  177 (296)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHc
Confidence            456788999999999999999999999999999999999999999999999999999988887766321           


Q ss_pred             -----------------------------------------------------------HHHHHHHHHHHHhcCHHHHHH
Q 017264           71 -----------------------------------------------------------KAYWRKATACMKLEEYETAKV   91 (374)
Q Consensus        71 -----------------------------------------------------------~a~~~lg~~~~~lg~~~eA~~   91 (374)
                                                                                 ++|+++|.++..+|++++|+.
T Consensus       178 ~~~~~~A~~~l~~~~~~~~~~~~~~~~~~~~lg~~~~~~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~  257 (296)
T PRK11189        178 KLDPKQAKENLKQRYEKLDKEQWGWNIVEFYLGKISEETLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAA  257 (296)
T ss_pred             cCCHHHHHHHHHHHHhhCCccccHHHHHHHHccCCCHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHH
Confidence                                                                       246677888888899999999


Q ss_pred             HHHHHHhcCCCC
Q 017264           92 ALEKGASLAPGD  103 (374)
Q Consensus        92 ~~~~a~~l~p~~  103 (374)
                      +|++++.++|.+
T Consensus       258 ~~~~Al~~~~~~  269 (296)
T PRK11189        258 LFKLALANNVYN  269 (296)
T ss_pred             HHHHHHHhCCch
Confidence            999999888743

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.06  E-value=2.8e-10  Score=113.66  Aligned_cols=118  Identities=18%  Similarity=0.278  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+...||.+--+++++.||+.|.+|+.++|+.+.+|..+|.=+..+..|+.|...|+.||..+|.+-.|||.+|.+|.+
T Consensus       422 esWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~rhYnAwYGlG~vy~K  501 (638)
T KOG1126|consen  422 ESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDPRHYNAWYGLGTVYLK  501 (638)
T ss_pred             HHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCchhhHHHHhhhhheec
Confidence            45778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++++.|...|++|++++|.+..+.-.+...+.+++..
T Consensus       502 qek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~  539 (638)
T KOG1126|consen  502 QEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRK  539 (638)
T ss_pred             cchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhh
Confidence            99999999999999999999999988888888877765

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.06  E-value=1.7e-09  Score=89.78  Aligned_cols=98  Identities=22%  Similarity=0.239  Sum_probs=92.1

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .+|.+++..+|.+..+++.+|.+++..|++.+|+..+++++.++|.++.+++++|.+++.+|++++|+.+|++++.++|+
T Consensus         4 ~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~   83 (135)
T TIGR02552         4 ATLKDLLGLDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD   83 (135)
T ss_pred             hhHHHHHcCChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHhh
Q 017264          103 DSRFTNLIKECEERIAEE  120 (374)
Q Consensus       103 ~~~~~~~~~~~~~~l~~~  120 (374)
                      +......++.+...+++.
T Consensus        84 ~~~~~~~la~~~~~~g~~  101 (135)
T TIGR02552        84 DPRPYFHAAECLLALGEP  101 (135)
T ss_pred             ChHHHHHHHHHHHHcCCH
Confidence            999888888887766554

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.05  E-value=6.9e-09  Score=92.55  Aligned_cols=117  Identities=15%  Similarity=0.151  Sum_probs=97.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~   80 (374)
                      ..+...|..++..|++++|+..|.+++...|.+..++.++|.+|..+|++++|+..+.+++...  +.....++.+|.++
T Consensus        66 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  145 (234)
T TIGR02521        66 LAYLALALYYQQLGELEKAEDSFRRALTLNPNNGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCA  145 (234)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHH
Confidence            3456788899999999999999999999999988899999999999999999999999998754  45667888899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +..|++++|...|.+++..+|++......++.+....+.
T Consensus       146 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  184 (234)
T TIGR02521       146 LKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQ  184 (234)
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCC
Confidence            999999999999999999988887766666665544433

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=99.05  E-value=6.9e-09  Score=96.44  Aligned_cols=106  Identities=11%  Similarity=0.006  Sum_probs=95.5

Q ss_pred             HHHHHHHHHH-HhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 017264            3 TDLEKKAKEA-FIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (374)
Q Consensus         3 ~~l~~~g~~~-~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~   75 (374)
                      ...+..|..+ +..|+|++|+..|...+...|++   +.+++.+|.+|+..|+|.+|+..|.+++...|+   .+++++.
T Consensus       143 ~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~k  222 (263)
T PRK10803        143 NTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFK  222 (263)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHH
Confidence            3456777776 67899999999999999999998   579999999999999999999999999999886   5789999


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264           76 KATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      +|.++..+|+++.|+..|+++++..|+......
T Consensus       223 lg~~~~~~g~~~~A~~~~~~vi~~yP~s~~a~~  255 (263)
T PRK10803        223 VGVIMQDKGDTAKAKAVYQQVIKKYPGTDGAKQ  255 (263)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            999999999999999999999999998875443

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=99.04  E-value=8.5e-09  Score=89.45  Aligned_cols=103  Identities=18%  Similarity=0.210  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..+...|..++..|+|++|+..|.+++.+.++.   +.++.++|.+|..+|++++|+..+.+++.++|.....++.+|.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3456889999999999999999999999987653   4589999999999999999999999999999999999999999


Q ss_pred             HHH-------HhcCHH-------HHHHHHHHHHhcCCCCh
Q 017264           79 ACM-------KLEEYE-------TAKVALEKGASLAPGDS  104 (374)
Q Consensus        79 ~~~-------~lg~~~-------eA~~~~~~a~~l~p~~~  104 (374)
                      ++.       .+|+++       +|+..|++++.++|.+.
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~~  154 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGNY  154 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCcccH
Confidence            998       677766       55666666777787654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.03  E-value=4.4e-09  Score=113.89  Aligned_cols=111  Identities=23%  Similarity=0.296  Sum_probs=102.1

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e   88 (374)
                      +..+...|++++|+.+|.+++..+|+ +.++.++|.++.++|++++|+..|.+++.++|+++.+++.+|.++..+|++++
T Consensus       583 a~~l~~~Gr~~eAl~~~~~AL~l~P~-~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~ee  661 (987)
T PRK09782        583 HAQRYIPGQPELALNDLTRSLNIAPS-ANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQ  661 (987)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            33444559999999999999999997 99999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           89 AKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |+.+|+++++++|++..+...++.+...++..
T Consensus       662 Ai~~l~~AL~l~P~~~~a~~nLA~al~~lGd~  693 (987)
T PRK09782        662 SREMLERAHKGLPDDPALIRQLAYVNQRLDDM  693 (987)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCH
Confidence            99999999999999999998888887765553

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.02  E-value=6.6e-09  Score=93.82  Aligned_cols=116  Identities=19%  Similarity=0.155  Sum_probs=109.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +..+|..++..|+|..|+..+.++....|++..++..+|.+|.++|++++|...|.+++++.|+.+.+.-++|..|+-.|
T Consensus       103 l~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~g  182 (257)
T COG5010         103 LAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRG  182 (257)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcC
Confidence            34589999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++.|...+..+...-+.+..+...+..+-...+..
T Consensus       183 d~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~  218 (257)
T COG5010         183 DLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDF  218 (257)
T ss_pred             CHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCCh
Confidence            999999999999988888999999998887766665

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=7.2e-09  Score=92.54  Aligned_cols=116  Identities=24%  Similarity=0.334  Sum_probs=100.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      .+...||.+|+.|+|.+|...|..||-.        .|..          ..++.|.++|++..++|.++++.+...|..
T Consensus       180 ~l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~  259 (329)
T KOG0545|consen  180 VLHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRH  259 (329)
T ss_pred             HHHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhc
Confidence            4778999999999999999999998764        4444          357899999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh-HHHHHHHHHHHHHh
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAE  119 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~-~~~~~~~~~~~l~~  119 (374)
                      +|++.++||++|.++...-+.++|.+.|.++++++|.-.. +...+..++.+...
T Consensus       260 ~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsrElr~le~r~~e  314 (329)
T KOG0545|consen  260 HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSRELRLLENRMAE  314 (329)
T ss_pred             CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999997654 44445555555443

>KOG2265 consensus Nuclear distribution protein NUDC [Signal transduction mechanisms]

Probab=99.01  E-value=2e-09  Score=90.85  Aligned_cols=87  Identities=18%  Similarity=0.234  Sum_probs=72.2

Q ss_pred             cCccccccCCeEEEEEEe-CCC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEee
Q 017264          174 YRHEFYQKPEEVVVTVFA-KGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAK  250 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~-k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K  250 (374)
                      -.|.|+||-+.|.|.|.+ +|+ +..+|.|.+.+++|.|.++   |.+-.++.+|+++|.++.|.|+|.+.+ |.|.|+|
T Consensus        19 ~~y~W~QtL~EV~i~i~vp~~~~ksk~v~~~Iq~~hI~V~~k---g~~~ildG~L~~~vk~des~WtiEd~k~i~i~l~K   95 (179)
T KOG2265|consen   19 EKYTWDQTLEEVEIQIPVPPGTAKSKDVHCSIQSKHIKVGLK---GQPPILDGELSHSVKVDESTWTIEDGKMIVILLKK   95 (179)
T ss_pred             cceeeeeehhheEEEeecCCCCcccceEEEEeeeeEEEEecC---CCCceecCccccccccccceEEecCCEEEEEEeec
Confidence            369999999999999865 666 7899999999999999986   555678899999999999999999986 5555555


Q ss_pred             cCC-CCCCccccCC
Q 017264          251 AEP-IQWSSLEFSK  263 (374)
Q Consensus       251 ~~~-~~W~~L~~~~  263 (374)
                      ... ..|.+|....
T Consensus        96 ~~~~eWW~~ll~ge  109 (179)
T KOG2265|consen   96 SNKMEWWDSLLEGE  109 (179)
T ss_pred             cchHHHHHHHHcCC
Confidence            553 7899998643

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.00  E-value=2.4e-09  Score=100.66  Aligned_cols=117  Identities=21%  Similarity=0.193  Sum_probs=100.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      -+...|..+.+.|++++|+..|.++|+.+|++..++..++.++..+|++.++...+.......|.++..+..+|.+++.+
T Consensus       148 ~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~l  227 (280)
T PF13429_consen  148 FWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQL  227 (280)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccc
Confidence            46678999999999999999999999999999999999999999999999999988888888888888999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++++|+.+|++++..+|+|+.+...++.+....+..
T Consensus       228 g~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~  264 (280)
T PF13429_consen  228 GRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRK  264 (280)
T ss_dssp             T-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----
T ss_pred             ccccccccccccccccccccccccccccccccccccc
Confidence            9999999999999999999999999999888777665

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=2.1e-09  Score=77.82  Aligned_cols=62  Identities=23%  Similarity=0.350  Sum_probs=31.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~   69 (374)
                      .|..++..|+|++|+..|.++++.+|.++.+++.+|.|+..+|++++|+..|++++.++|++
T Consensus         3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~   64 (65)
T PF13432_consen    3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDN   64 (65)
T ss_dssp             HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCC
Confidence            44555555555555555555555555555555555555555555555555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.98  E-value=1.7e-09  Score=78.36  Aligned_cols=65  Identities=20%  Similarity=0.326  Sum_probs=60.6

Q ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           40 ADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        40 ~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      +.+|..+++.|+|++|+..|++++..+|+++.+++.+|.+++.+|++++|+..|++++.++|+++
T Consensus         1 ~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p   65 (65)
T PF13432_consen    1 YALARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP   65 (65)
T ss_dssp             HHHHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred             ChHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence            46899999999999999999999999999999999999999999999999999999999999875

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.98  E-value=8.5e-09  Score=108.20  Aligned_cols=108  Identities=13%  Similarity=0.047  Sum_probs=69.1

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE----AVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~----Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +..++..|++++|+..|.+++..+|.++.++..+|.+|..+|++++    |+..|++++.++|++..+++.+|.++..+|
T Consensus       219 ~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g  298 (656)
T PRK15174        219 VDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTG  298 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCC
Confidence            4555666666666666666666666666666666666666666664    566666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++++|+.+|++++.++|++..+...++.+...
T Consensus       299 ~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~  330 (656)
T PRK15174        299 QNEKAIPLLQQSLATHPDLPYVRAMYARALRQ  330 (656)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            66666666666666666666555555554433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=98.97  E-value=1e-08  Score=107.64  Aligned_cols=110  Identities=12%  Similarity=0.087  Sum_probs=91.8

Q ss_pred             HHHHHHHHHHhccCHHH----HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFEL----AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~----Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      .+...|..++..|++++    |+..|.+++..+|+++.++..+|.+|..+|++++|+..+++++.++|+++.+++.+|.+
T Consensus       248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~  327 (656)
T PRK15174        248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARA  327 (656)
T ss_pred             HHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            45667888888888885    78889999999998888888899999999999999999999999999888888888999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      |..+|++++|+..|++++..+|++......++.+
T Consensus       328 l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~a  361 (656)
T PRK15174        328 LRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAA  361 (656)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence            9999999999999988888888876544433333

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=98.97  E-value=1.7e-08  Score=83.94  Aligned_cols=105  Identities=23%  Similarity=0.233  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~   75 (374)
                      +..++..|..+++.|+|.+|++.|..+....|..   ..+.+.++.+|++.++|++|+..+++.++|+|.+   .-++|.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~   89 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYM   89 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence            4578999999999999999999999999987765   5789999999999999999999999999999976   458999


Q ss_pred             HHHHHHHhcC---------------HHHHHHHHHHHHhcCCCChhH
Q 017264           76 KATACMKLEE---------------YETAKVALEKGASLAPGDSRF  106 (374)
Q Consensus        76 lg~~~~~lg~---------------~~eA~~~~~~a~~l~p~~~~~  106 (374)
                      +|.+++.+..               ...|+..|+..++..|+..-.
T Consensus        90 ~gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S~ya  135 (142)
T PF13512_consen   90 RGLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNSEYA  135 (142)
T ss_pred             HHHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCChhH
Confidence            9999999987               888999999999999887643

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=98.96  E-value=1.2e-08  Score=90.52  Aligned_cols=114  Identities=15%  Similarity=0.105  Sum_probs=101.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~   80 (374)
                      ..+...|..+...|+.+.|-+.|.+||.++|++..++.|.|..++.+|+|++|.+.|++|+..-  +..+..+-++|.|.
T Consensus        70 ~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Ca  149 (250)
T COG3063          70 LAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCA  149 (250)
T ss_pred             HHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHH
Confidence            3466788999999999999999999999999999999999999999999999999999999542  35678999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++.|+++.|...|+++++++|+++.....+.+.+.+
T Consensus       150 l~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~  185 (250)
T COG3063         150 LKAGQFDQAEEYLKRALELDPQFPPALLELARLHYK  185 (250)
T ss_pred             hhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHh
Confidence            999999999999999999999998766655555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=98.95  E-value=2.8e-08  Score=80.64  Aligned_cols=101  Identities=27%  Similarity=0.308  Sum_probs=92.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKAT   78 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~----~~a~~~lg~   78 (374)
                      ..+-.+|..+...|+.+.|++.|.++|.+.|..+.+|.+||.+|.-.|+.++|+.++++|+++....    -.+|..+|.
T Consensus        44 ~~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~  123 (175)
T KOG4555|consen   44 RELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGL  123 (175)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHH
Confidence            3566789999999999999999999999999999999999999999999999999999999997653    347889999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           79 ACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      +|..+|+-+.|...|+.+-++....
T Consensus       124 lyRl~g~dd~AR~DFe~AA~LGS~F  148 (175)
T KOG4555|consen  124 LYRLLGNDDAARADFEAAAQLGSKF  148 (175)
T ss_pred             HHHHhCchHHHHHhHHHHHHhCCHH
Confidence            9999999999999999998887654

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.94  E-value=4e-08  Score=90.82  Aligned_cols=117  Identities=21%  Similarity=0.169  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      +-+...|..++..+++..|+..|.+|+++.|+++.++..+|.+++..   ..-.++...+++++.++|.+..+.+.+|..
T Consensus       157 egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lLA~~  236 (287)
T COG4235         157 EGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLLAFA  236 (287)
T ss_pred             hhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999998775   456789999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++..|+|.+|...++..+.+.|.+..-...+.+.......
T Consensus       237 afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie~~ia~~~~  276 (287)
T COG4235         237 AFEQGDYAEAAAAWQMLLDLLPADDPRRSLIERSIARALA  276 (287)
T ss_pred             HHHcccHHHHHHHHHHHHhcCCCCCchHHHHHHHHHHHHh
Confidence            9999999999999999999999887766666555444433

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.91  E-value=3.3e-08  Score=105.66  Aligned_cols=112  Identities=11%  Similarity=0.100  Sum_probs=105.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..+...|++++|+.+|.++|..+|.++.++..+|.++...|++++|+..+++++..+|++.. ++.+|.++..
T Consensus        50 ~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~  128 (765)
T PRK10049         50 RGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKR  128 (765)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHH
Confidence            357889999999999999999999999999999999999999999999999999999999999999999 9999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .|++.+|+.+|++++.+.|++..+...++.+..
T Consensus       129 ~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~  161 (765)
T PRK10049        129 AGRHWDELRAMTQALPRAPQTQQYPTEYVQALR  161 (765)
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            999999999999999999999988777766543

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=98.90  E-value=4.3e-08  Score=89.61  Aligned_cols=110  Identities=15%  Similarity=0.131  Sum_probs=100.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRK   76 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~l   76 (374)
                      ..+++.|..+++.|+|..|...|...|+..|++   +.+++-+|.+++.+|+|.+|...|..+++-.|+.   ++++|.+
T Consensus       142 ~~~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl  221 (262)
T COG1729         142 TKLYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL  221 (262)
T ss_pred             hHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence            457899999999999999999999999999887   6899999999999999999999999999988764   7899999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      |.++..+|+.++|...|+++++..|+......-...
T Consensus       222 g~~~~~l~~~d~A~atl~qv~k~YP~t~aA~~Ak~~  257 (262)
T COG1729         222 GVSLGRLGNTDEACATLQQVIKRYPGTDAAKLAKVA  257 (262)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHCCCCHHHHHHHHH
Confidence            999999999999999999999999998865544433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.90  E-value=3.5e-08  Score=103.24  Aligned_cols=116  Identities=13%  Similarity=0.035  Sum_probs=103.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ......|..+.+.+.+++|+..+.++|..+|+++.+++.+|.|+.++|+|++|+..|++++..+|++..+++.+|.++..
T Consensus       121 ~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~  200 (694)
T PRK15179        121 EAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTR  200 (694)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIA  118 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~-~~~~~~~~~~~~l~  118 (374)
                      +|+.++|..+|++++.+..+-. .+...+.++.+.+.
T Consensus       201 ~G~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  237 (694)
T PRK15179        201 RGALWRARDVLQAGLDAIGDGARKLTRRLVDLNADLA  237 (694)
T ss_pred             cCCHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHH
Confidence            9999999999999998765443 33455555554433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.87  E-value=4.2e-08  Score=89.49  Aligned_cols=118  Identities=15%  Similarity=0.077  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCCHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKL--------QNFTEAVADANRAIELEPSMSK   71 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~---~~~~ra~~~~~l--------~~~~~Al~~~~~al~l~p~~~~   71 (374)
                      +.++..|..++..|++++|+..|.++++..|+++.   +++.+|.++..+        |++++|+..+.+++..+|++..
T Consensus        71 ~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  150 (235)
T TIGR03302        71 QAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEY  150 (235)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChh
Confidence            35678999999999999999999999999998765   789999999986        8899999999999999998754


Q ss_pred             HH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHhh
Q 017264           72 AY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE  120 (374)
Q Consensus        72 a~-----------------~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l~~~  120 (374)
                      ++                 +.+|.+++..|++.+|+..|+.++...|+.+   .....+..+...+++.
T Consensus       151 ~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~  219 (235)
T TIGR03302       151 APDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLK  219 (235)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCH
Confidence            32                 4678899999999999999999999988754   5666677776666554

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PLN02789 farnesyltranstransferase

Probab=98.85  E-value=7.3e-08  Score=92.20  Aligned_cols=112  Identities=12%  Similarity=-0.014  Sum_probs=80.5

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF--TEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~--~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .+..+|..+...+ ++.+|+..+++++..+|.+..++..|+.++.++++.  .+++..+.+++.++|++..+|..+|.++
T Consensus        73 aW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l  152 (320)
T PLN02789         73 VWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVL  152 (320)
T ss_pred             HHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            3455666666666 567777777777777777777777777777777653  5667777777777777777777777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      ..+|+|++|+.++.++++.+|.|..+......+..
T Consensus       153 ~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~  187 (320)
T PLN02789        153 RTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVIT  187 (320)
T ss_pred             HHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHH
Confidence            77777777777777777777777766665555533

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=98.84  E-value=1.6e-07  Score=84.21  Aligned_cols=119  Identities=27%  Similarity=0.250  Sum_probs=95.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~   75 (374)
                      ++.++..|..++..|+|.+|+..|.+++...|.+   ..+.+.+|.+|++.|+|..|+..+++.+...|++   ..++|.
T Consensus         5 ~~~lY~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~   84 (203)
T PF13525_consen    5 AEALYQKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYM   84 (203)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHH
Confidence            4678999999999999999999999999998876   5789999999999999999999999999999975   568999


Q ss_pred             HHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChh---HHHHHHHHHHHHHhh
Q 017264           76 KATACMKLEE-----------YETAKVALEKGASLAPGDSR---FTNLIKECEERIAEE  120 (374)
Q Consensus        76 lg~~~~~lg~-----------~~eA~~~~~~a~~l~p~~~~---~~~~~~~~~~~l~~~  120 (374)
                      +|.+++.+.+           ..+|+..|+..+...|+..-   +...+..+..+|...
T Consensus        85 ~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~  143 (203)
T PF13525_consen   85 LGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEH  143 (203)
T ss_dssp             HHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHH
Confidence            9999887643           35899999999999999864   445555666555443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.83  E-value=7.4e-08  Score=93.76  Aligned_cols=117  Identities=15%  Similarity=0.182  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      ..+..+...+..|.++.|+..++..+...|+|+.++..++.++++.++..+|++.+++++.++|+.+...+++|.+|...
T Consensus       308 a~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~  387 (484)
T COG4783         308 AQYGRALQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKG  387 (484)
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhc
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++.+|+..+...+..+|+++..+..++++...++..
T Consensus       388 g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         388 GKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             CChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCch
Confidence            9999999999999999999999999999999888775

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.83  E-value=1.1e-08  Score=74.56  Aligned_cols=67  Identities=19%  Similarity=0.203  Sum_probs=47.5

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      ++..|+|++|+.+|.+++..+|++..+++.+|.||+++|++++|...+.+++..+|+++.++..++.
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            4566777777777777777777777777777777777777777777777777777776666555543

...

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.82  E-value=7.3e-08  Score=103.02  Aligned_cols=114  Identities=23%  Similarity=0.186  Sum_probs=103.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.+..+++.+|.++...|++++|+..+++++..+|.+..+++.+|.+++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (899)
T TIGR02917       126 ELLALRGLAYLGLGQLELAQKSYEQALAIDPRSLYAKLGLAQLALAENRFDEARALIDEVLTADPGNVDALLLKGDLLLS  205 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHh
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .|++++|+.+|++++.++|.+......+..+...
T Consensus       206 ~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  239 (899)
T TIGR02917       206 LGNIELALAAYRKAIALRPNNPAVLLALATILIE  239 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            9999999999999999999988776666555433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.80  E-value=2.5e-07  Score=85.25  Aligned_cols=119  Identities=18%  Similarity=0.141  Sum_probs=98.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH---HHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF---ADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~---~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~   75 (374)
                      ++.++..|..++..|+|++|+..|.+++...|....+.   +.+|.+|+++++|.+|+..+++.+.+.|++   ..++|.
T Consensus        32 ~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~  111 (243)
T PRK10866         32 PSEIYATAQQKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYM  111 (243)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHH
Confidence            34678899999999999999999999999999986544   889999999999999999999999999865   568999


Q ss_pred             HHHHHHHhcC------------------HHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHhh
Q 017264           76 KATACMKLEE------------------YETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE  120 (374)
Q Consensus        76 lg~~~~~lg~------------------~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l~~~  120 (374)
                      +|.+++.+++                  ...|+..|+..++..|+..   .+...+..|..+|...
T Consensus       112 ~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP~S~ya~~A~~rl~~l~~~la~~  177 (243)
T PRK10866        112 RGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKY  177 (243)
T ss_pred             HHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHH
Confidence            9998766541                  2578899999999999875   3455555565555543

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.80  E-value=4.6e-08  Score=82.83  Aligned_cols=92  Identities=11%  Similarity=0.103  Sum_probs=85.7

Q ss_pred             HHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           29 IEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        29 L~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      .... ++..+.++.+|..++..|++++|...|+.++.++|.+...|++||.++-.+|+|.+|+.+|.++..++|+++...
T Consensus        27 ~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~  106 (157)
T PRK15363         27 LDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAP  106 (157)
T ss_pred             HCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHH
Confidence            3445 677888999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhh
Q 017264          108 NLIKECEERIAEE  120 (374)
Q Consensus       108 ~~~~~~~~~l~~~  120 (374)
                      ...+.|.-.+++.
T Consensus       107 ~~ag~c~L~lG~~  119 (157)
T PRK15363        107 WAAAECYLACDNV  119 (157)
T ss_pred             HHHHHHHHHcCCH
Confidence            9999998877665

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.79  E-value=8.6e-08  Score=106.94  Aligned_cols=110  Identities=15%  Similarity=0.201  Sum_probs=78.6

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--------
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT--------   78 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~--------   78 (374)
                      ..|..++..|++++|+.+|.+++.++|.+..+++.+|.+|..+|++++|+..|++++.++|.+..++..++.        
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~  435 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPE  435 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHH
Confidence            456677777778888888888888777777777777777777778888888777777777776655544333        


Q ss_pred             ----------------------------------HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           79 ----------------------------------ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        79 ----------------------------------~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                                                        ++...|++++|+.+|+++++++|++..+...++.+...
T Consensus       436 ~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~~~~~~~~LA~~~~~  507 (1157)
T PRK11447        436 KALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPGSVWLTYRLAQDLRQ  507 (1157)
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence                                              33456777777777777777777777666555555443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.79  E-value=4.2e-08  Score=72.50  Aligned_cols=66  Identities=29%  Similarity=0.476  Sum_probs=37.3

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      ..++..++|+.|+..+++++..+|+++.++..+|.||.++|++.+|+.++++++.+.|+...+...
T Consensus         3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~   68 (73)
T PF13371_consen    3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL   68 (73)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence            345555555555555555555555555555555555555555555555555555555555544433

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.79  E-value=1.7e-07  Score=87.64  Aligned_cols=117  Identities=17%  Similarity=0.173  Sum_probs=107.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+..+...++-.||+..||.+.+..|+..|-++.++..||.||...|....||.++..+-.|..++.+.+|.++.++|..
T Consensus       157 ~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~v  236 (504)
T KOG0624|consen  157 VLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTV  236 (504)
T ss_pred             HHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhh
Confidence            45678888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |+...++...+.|++++|++..+...+.++.+..+..
T Consensus       237 gd~~~sL~~iRECLKldpdHK~Cf~~YKklkKv~K~l  273 (504)
T KOG0624|consen  237 GDAENSLKEIRECLKLDPDHKLCFPFYKKLKKVVKSL  273 (504)
T ss_pred             hhHHHHHHHHHHHHccCcchhhHHHHHHHHHHHHHHH
Confidence            9999999999999999999998777766665544443

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=98.79  E-value=9.9e-08  Score=106.43  Aligned_cols=109  Identities=17%  Similarity=0.224  Sum_probs=63.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------------LFADRAQASIKLQNFTEAVADANRAIELEPSMS   70 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~--------------~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~   70 (374)
                      +...|..++..|++++|+.+|.++++.+|.+..              .+..+|.++.+.|++++|+..|++++.++|.+.
T Consensus       306 ~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~  385 (1157)
T PRK11447        306 LGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDS  385 (1157)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCH
Confidence            344455555555555555555555555444321              112234444455555555555555555555566


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+++.+|.++..+|++++|+.+|+++++++|++......+..+
T Consensus       386 ~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l  428 (1157)
T PRK11447        386 YAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL  428 (1157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            6677777788888888888888888888877777655544444

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=98.79  E-value=9.9e-08  Score=102.00  Aligned_cols=114  Identities=16%  Similarity=0.186  Sum_probs=81.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +...|..+...|++++|+.+|.+++...|+++.++..+|.++..+|+ .+|+..+++++.+.|+++..+..+|.+++.+|
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  851 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKG  851 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcC
Confidence            45566667777777777777777777777777777777777777777 66777777777777777777777777777777


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++++|+..|+++++++|.+..+...+..+..+.++
T Consensus       852 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~  886 (899)
T TIGR02917       852 EADRALPLLRKAVNIAPEAAAIRYHLALALLATGR  886 (899)
T ss_pred             CHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCC
Confidence            77777777777777777777666666665554433

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=98.78  E-value=3e-08  Score=73.31  Aligned_cols=71  Identities=27%  Similarity=0.418  Sum_probs=65.6

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           43 AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        43 a~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..+|.+.++|++|+..+++++.++|.++..++.+|.+++.+|+|.+|+.+|+++++..|++.......+++
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~~a~l   72 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARALRAML   72 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHHHHhc
Confidence            56788999999999999999999999999999999999999999999999999999999998876665543

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=98.77  E-value=1.5e-07  Score=100.55  Aligned_cols=109  Identities=17%  Similarity=0.066  Sum_probs=102.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +...|..+...|++++|+..|.+++...|.+..+++.+|.++..+|++++|+..+++++.++|++..+++.+|.++..+|
T Consensus       362 ~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~  441 (765)
T PRK10049        362 QSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQ  441 (765)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhC
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ++++|...++.++...|+++.+...-...
T Consensus       442 ~~~~A~~~~~~ll~~~Pd~~~~~~~~~~~  470 (765)
T PRK10049        442 EWRQMDVLTDDVVAREPQDPGVQRLARAR  470 (765)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            99999999999999999999765544433

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.76  E-value=1.9e-07  Score=91.39  Aligned_cols=98  Identities=15%  Similarity=0.192  Sum_probs=63.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcC
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATACMKLEE   85 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~~~lg~   85 (374)
                      ..|..++..|++++|+.+|.++++.+|.+..+++.+|.+|.++|++++|+..+++++..+|.+ ..++..++.+|...|+
T Consensus       185 ~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~  264 (389)
T PRK11788        185 ELAQQALARGDLDAARALLKKALAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGD  264 (389)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCC
Confidence            455556666666666666666666666666666666666666666666666666666666554 3445566666666666


Q ss_pred             HHHHHHHHHHHHhcCCCCh
Q 017264           86 YETAKVALEKGASLAPGDS  104 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~  104 (374)
                      +++|+..|+++++..|+..
T Consensus       265 ~~~A~~~l~~~~~~~p~~~  283 (389)
T PRK11788        265 EAEGLEFLRRALEEYPGAD  283 (389)
T ss_pred             HHHHHHHHHHHHHhCCCch
Confidence            6666666666666666543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.76  E-value=2.4e-07  Score=75.61  Aligned_cols=95  Identities=21%  Similarity=0.044  Sum_probs=86.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRK   76 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~l   76 (374)
                      +.+++.|..+-..|+.++|+.+|.+++......   ..+++.+|.+|..+|++++|+..++.++...|+   +......+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            467899999999999999999999999975444   578999999999999999999999999999888   78888889


Q ss_pred             HHHHHHhcCHHHHHHHHHHHH
Q 017264           77 ATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~   97 (374)
                      +.+++++|++++|+..+-.++
T Consensus        82 Al~L~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   82 ALALYNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHHHHHCCCHHHHHHHHHHHH
Confidence            999999999999999887765

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.76  E-value=2.8e-08  Score=95.58  Aligned_cols=117  Identities=18%  Similarity=0.194  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .++.++|+..|.+|+|+.|++.|.+||..+....++++++|..+..+|++++|+.+|-++-.+--++.++++.++.+|..
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~  570 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYEL  570 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999988877777899999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +.+..+|++.|-++..+-|+++.+..-++.+..+-+.
T Consensus       571 led~aqaie~~~q~~slip~dp~ilskl~dlydqegd  607 (840)
T KOG2003|consen  571 LEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGD  607 (840)
T ss_pred             hhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccc
Confidence            9999999999999999999999998888887765433

>PLN02789 farnesyltranstransferase

Probab=98.74  E-value=2.3e-07  Score=88.71  Aligned_cols=110  Identities=15%  Similarity=0.052  Sum_probs=99.8

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH--H
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY--E   87 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~--~   87 (374)
                      .+...+.+++|+.+++++|.++|.+..++..|+.++..++ .+.+++..++++++.+|++..+|+.++.++..+|+.  .
T Consensus        46 ~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~  125 (320)
T PLN02789         46 VYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAAN  125 (320)
T ss_pred             HHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhH
Confidence            3556788999999999999999999999999999999998 689999999999999999999999999999999874  7


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++.++.++++++|.|-.+....+.+...++..
T Consensus       126 ~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~  158 (320)
T PLN02789        126 KELEFTRKILSLDAKNYHAWSHRQWVLRTLGGW  158 (320)
T ss_pred             HHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhH
Confidence            889999999999999998888888777776554

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=98.74  E-value=1.9e-07  Score=91.42  Aligned_cols=114  Identities=14%  Similarity=0.179  Sum_probs=80.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-----SKAYWRKATA   79 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-----~~a~~~lg~~   79 (374)
                      +...|..++..|+|+.|+..|.+++..+|.+..++..++.+|.+.|++++|+..+.+++...|..     ...++.+|.+
T Consensus       110 ~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~  189 (389)
T PRK11788        110 LQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQ  189 (389)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHH
Confidence            45567777777777777777777777777777777777777777777777777777777776653     2245567777


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      ++..|++++|+..|+++++.+|++......++.+....+
T Consensus       190 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  228 (389)
T PRK11788        190 ALARGDLDAARALLKKALAADPQCVRASILLGDLALAQG  228 (389)
T ss_pred             HHhCCCHHHHHHHHHHHHhHCcCCHHHHHHHHHHHHHCC
Confidence            777777777777777777777776655555555544433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.73  E-value=1e-07  Score=97.01  Aligned_cols=103  Identities=15%  Similarity=0.150  Sum_probs=95.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH--HHHHHHHhCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVA--DANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~--~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..++..|..+...|.+.+|.+.|..|+.++|+++.....+|.||.+.|+-.-|..  .+..|++++|.+.++||.+|.++
T Consensus       685 ~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~  764 (799)
T KOG4162|consen  685 SVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVF  764 (799)
T ss_pred             HHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999999997776666  99999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      ..+|+.++|.+||+.++++.+.++.
T Consensus       765 k~~Gd~~~Aaecf~aa~qLe~S~PV  789 (799)
T KOG4162|consen  765 KKLGDSKQAAECFQAALQLEESNPV  789 (799)
T ss_pred             HHccchHHHHHHHHHHHhhccCCCc
Confidence            9999999999999999999988773

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.72  E-value=4.1e-07  Score=81.89  Aligned_cols=109  Identities=16%  Similarity=0.136  Sum_probs=87.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      ..-.|..+-..|+|++|+++|+..|.-+|.+..++.+.-.+.-.+|+--+||+.+...+...+++.++|..++.+|+..|
T Consensus        89 ~~lkam~lEa~~~~~~A~e~y~~lL~ddpt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~  168 (289)
T KOG3060|consen   89 GKLKAMLLEATGNYKEAIEYYESLLEDDPTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEG  168 (289)
T ss_pred             HHHHHHHHHHhhchhhHHHHHHHHhccCcchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHh
Confidence            35578888999999999999999999999997777766666666777778888888888888888888888888888888


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      +|+.|..||+.++-++|-++.+...++.+
T Consensus       169 ~f~kA~fClEE~ll~~P~n~l~f~rlae~  197 (289)
T KOG3060|consen  169 DFEKAAFCLEELLLIQPFNPLYFQRLAEV  197 (289)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHH
Confidence            88888888888888888777655554443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=98.72  E-value=7e-09  Score=96.76  Aligned_cols=111  Identities=32%  Similarity=0.425  Sum_probs=100.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      |.+..-++..++..|.++.||++|+.+|.++|.++.+|..|+.+++++++.-.|+.+|..|+.++|+....|-.+|.+..
T Consensus       114 a~e~k~~A~eAln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~r  193 (377)
T KOG1308|consen  114 ANDKKVQASEALNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAER  193 (377)
T ss_pred             HHHHHHHHHHHhcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHH
Confidence            45677889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+|++.+|..+|..+.+++-+.. .-.|+..+
T Consensus       194 llg~~e~aa~dl~~a~kld~dE~-~~a~lKeV  224 (377)
T KOG1308|consen  194 LLGNWEEAAHDLALACKLDYDEA-NSATLKEV  224 (377)
T ss_pred             HhhchHHHHHHHHHHHhccccHH-HHHHHHHh
Confidence            99999999999999999987533 34444443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.69  E-value=6.5e-08  Score=70.43  Aligned_cols=67  Identities=21%  Similarity=0.354  Sum_probs=61.0

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      +++.|+|++|+..|++++..+|++..+++.+|.+|+..|++++|...|.+++..+|+++.+...+++
T Consensus         1 ll~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l~a~   67 (68)
T PF14559_consen    1 LLKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQLLAQ   67 (68)
T ss_dssp             HHHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHHHHH
T ss_pred             ChhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHHHhc
Confidence            3578999999999999999999999999999999999999999999999999999998877766654

...

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.69  E-value=2.3e-07  Score=78.43  Aligned_cols=92  Identities=23%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKA   77 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg   77 (374)
                      ..+..+...+..+++..+...+...+...|+.   ..+.+.+|.+++..|++++|+..|+.++...++.   ..+.+++|
T Consensus        13 ~~y~~~~~~~~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   13 ALYEQALQALQAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            34445555555666666666666666666655   3455556666666666666666666666555432   33555666


Q ss_pred             HHHHHhcCHHHHHHHHHH
Q 017264           78 TACMKLEEYETAKVALEK   95 (374)
Q Consensus        78 ~~~~~lg~~~eA~~~~~~   95 (374)
                      .+++..|+|++|+..++.
T Consensus        93 ~~~~~~~~~d~Al~~L~~  110 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQ  110 (145)
T ss_pred             HHHHHcCCHHHHHHHHHh
Confidence            666666666666666544

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=98.68  E-value=2.7e-07  Score=79.33  Aligned_cols=98  Identities=19%  Similarity=0.318  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 017264           18 FELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE--   85 (374)
Q Consensus        18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~--   85 (374)
                      |+.|.+.|...+..+|.+++.+++-|.+++.+          ..+++|+.=|+.||.++|+..++++.+|.+|..++.  
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~   86 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLT   86 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhc
Confidence            67899999999999999999999999999887          346778889999999999999999999999987665  


Q ss_pred             ---------HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           86 ---------YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        86 ---------~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                               |++|..+|+++...+|++...+.-+..+.+
T Consensus        87 ~d~~~A~~~F~kA~~~FqkAv~~~P~ne~Y~ksLe~~~k  125 (186)
T PF06552_consen   87 PDTAEAEEYFEKATEYFQKAVDEDPNNELYRKSLEMAAK  125 (186)
T ss_dssp             --HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHT
T ss_pred             CChHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHh
Confidence                     789999999999999999988888877754

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.67  E-value=1.7e-07  Score=92.58  Aligned_cols=112  Identities=19%  Similarity=0.217  Sum_probs=97.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      +...|..+|..+.|.+|+.+|..+|..-+.       -...+.++|.+|.+++.|++|+..++++|.+.|.++.+|-.+|
T Consensus       417 ~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig  496 (611)
T KOG1173|consen  417 LHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIG  496 (611)
T ss_pred             hhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHH
Confidence            456788888899999999999988843211       2346899999999999999999999999999999999999999


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        78 ~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .+|..+|+++.|+..|.+++-+.|++..+...+..+-..
T Consensus       497 ~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~aie~  535 (611)
T KOG1173|consen  497 YIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAIED  535 (611)
T ss_pred             HHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence            999999999999999999999999998877777765443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.67  E-value=2.1e-07  Score=90.66  Aligned_cols=82  Identities=21%  Similarity=0.222  Sum_probs=77.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+..+|.+++..|+|++|+..|.++|.++|.++.+|+++|.+|+.+|+|++|+.+|++++.++|++..++..++.|...
T Consensus        37 ~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~k  116 (356)
T PLN03088         37 ELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKAALEKGASLAPGDSRFTKLIKECDEK  116 (356)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999888888766


Q ss_pred             hc
Q 017264           83 LE   84 (374)
Q Consensus        83 lg   84 (374)
                      +.
T Consensus       117 l~  118 (356)
T PLN03088        117 IA  118 (356)
T ss_pred             HH
Confidence            63

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.66  E-value=1.1e-07  Score=92.82  Aligned_cols=63  Identities=17%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAEL---FADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~---~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      ..+.+.|..|+..|+|++|+..|++||.++|++..+   |+++|.||..+|++++|+.++++|+++
T Consensus        76 ~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         76 EDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            445566666666666666666666666666665533   666666666666666666666666665

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.64  E-value=2.6e-07  Score=80.12  Aligned_cols=112  Identities=14%  Similarity=0.095  Sum_probs=95.9

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACM   81 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~   81 (374)
                      .+.+.+|..++|..+...+...++.....  ..+++.+|.++..+|++++|+..|.+++.+.++   .+.+++++|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~   83 (168)
T CHL00033          4 SQRNDNFIDKTFTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHT   83 (168)
T ss_pred             ccccccccccccccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHH
Confidence            35677888899999999998877776665  677899999999999999999999999999776   3458999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      .+|++++|+.+|++++.+.|........++.+...++
T Consensus        84 ~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~~~~  120 (168)
T CHL00033         84 SNGEHTKALEYYFQALERNPFLPQALNNMAVICHYRG  120 (168)
T ss_pred             HcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhh
Confidence            9999999999999999999998887777776666433

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.63  E-value=4.2e-07  Score=82.25  Aligned_cols=110  Identities=22%  Similarity=0.278  Sum_probs=102.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      ...+..++..|+-+.++....+++..+|.+..++...|..+++.|+|.+|+..+.++..+.|+++++|.-+|.+|-++|+
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr  149 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGR  149 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccC
Confidence            45778889999999999999999999999999998899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      +++|...|.+++++.|+++.+..++.....
T Consensus       150 ~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~  179 (257)
T COG5010         150 FDEARRAYRQALELAPNEPSIANNLGMSLL  179 (257)
T ss_pred             hhHHHHHHHHHHHhccCCchhhhhHHHHHH
Confidence            999999999999999999988888776554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=98.60  E-value=6.2e-07  Score=87.67  Aligned_cols=69  Identities=23%  Similarity=0.215  Sum_probs=66.3

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH---HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA---YWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a---~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      .+|+++.+++++|.+|+++|+|++|+..|++||+++|++..+   |+++|.+|..+|++++|+.+|++++++
T Consensus        70 ~dP~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         70 ADVKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            479999999999999999999999999999999999999865   999999999999999999999999997

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=98.58  E-value=5.8e-07  Score=86.05  Aligned_cols=94  Identities=23%  Similarity=0.233  Sum_probs=83.6

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +.+.+.++.+.++|..|+..++++|..+|+|..++++||.||..+++|+.|+.+|.+|++++|.+..+...+..+.....
T Consensus       260 ~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~  339 (397)
T KOG0543|consen  260 HLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIR  339 (397)
T ss_pred             hhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHH
Confidence            57899999999999999999999999999999999999999999999999999999999999999999888888877766


Q ss_pred             CHHHH-HHHHHHHHh
Q 017264           85 EYETA-KVALEKGAS   98 (374)
Q Consensus        85 ~~~eA-~~~~~~a~~   98 (374)
                      ++.+. ...|...+.
T Consensus       340 ~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  340 EYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHhh
Confidence            66544 455655543

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=98.57  E-value=2.7e-07  Score=81.30  Aligned_cols=115  Identities=21%  Similarity=0.143  Sum_probs=103.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .-++.+|+.+-..|-+.-|.--|+++|.+.|.-+.++..+|.-+...|+|+.|.+.|+..++++|..--+++++|++++.
T Consensus        66 ~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY  145 (297)
T COG4785          66 QLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  145 (297)
T ss_pred             HHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeee
Confidence            44677777777777788899999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      -|+|.-|...|.+..+-+|+++--..|+-..+.++
T Consensus       146 ~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~E~k~  180 (297)
T COG4785         146 GGRYKLAQDDLLAFYQDDPNDPFRSLWLYLNEQKL  180 (297)
T ss_pred             cCchHhhHHHHHHHHhcCCCChHHHHHHHHHHhhC
Confidence            99999999999999999999997666665554443

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.57  E-value=8.5e-07  Score=94.58  Aligned_cols=112  Identities=11%  Similarity=-0.039  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++..+.++...++.|+|+.|+..|.++++.+|.++.+...++.++..+|++++|+.++++++.-.|.....+..+|.++.
T Consensus        34 ~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~ly~  113 (822)
T PRK14574         34 ADTQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARAYR  113 (822)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence            34567888999999999999999999999999985333366666666677777777777777222233333333355667


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+|+|++|+..|+++++.+|+++.+...+..+
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~  145 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPTNPDLISGMIMT  145 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHH
Confidence            77777777777777777777776655544443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.56  E-value=6e-07  Score=89.95  Aligned_cols=117  Identities=10%  Similarity=0.073  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+|.++...|..++|...+...+.+|+..|.+.+.+.-.|..+..+|+-++|....+.+++.++...-+|..+|+++...
T Consensus         9 ~lF~~~lk~yE~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~d   88 (700)
T KOG1156|consen    9 ALFRRALKCYETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSD   88 (700)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhh
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++|++|+.||+.|+.++|+|..+.+-++-++.+++..
T Consensus        89 K~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~  125 (700)
T KOG1156|consen   89 KKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDY  125 (700)
T ss_pred             hhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999999998888877765

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=98.56  E-value=4e-07  Score=85.48  Aligned_cols=115  Identities=20%  Similarity=0.245  Sum_probs=91.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~--p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      ......++..++++++...+.++....  +.++.++..+|.++.+.|++++|+.++++|+.++|++..++..++.++...
T Consensus       114 ~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~~~~~~~~l~~~li~~  193 (280)
T PF13429_consen  114 LSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALELDPDDPDARNALAWLLIDM  193 (280)
T ss_dssp             ----H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHCTT
T ss_pred             hHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHC
Confidence            345567788999999999999977654  677889999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |+++++...+.......|.++.+...++.+...+++.
T Consensus       194 ~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~  230 (280)
T PF13429_consen  194 GDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRY  230 (280)
T ss_dssp             CHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-H
T ss_pred             CChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccc
Confidence            9999999999988888888888888888887776664

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.52  E-value=2.1e-06  Score=87.39  Aligned_cols=110  Identities=16%  Similarity=0.127  Sum_probs=63.7

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHHHh--CCCCH
Q 017264            4 DLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--------NFTEAVADANRAIEL--EPSMS   70 (374)
Q Consensus         4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--------~~~~Al~~~~~al~l--~p~~~   70 (374)
                      .++.+|..++..++   +..|+.+|.+|++++|+++.++..++.||....        +...+.+.+.+++.+  ++..+
T Consensus       341 ~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~al~~~~~~~  420 (517)
T PRK10153        341 TLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVALPELNVLP  420 (517)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhhcccCcCCh
Confidence            46677777766555   788999999999999998777777776664431        122333333343332  34444


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+|..+|..+...|++++|...|++++.++|+ ......++++.
T Consensus       421 ~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps-~~a~~~lG~~~  463 (517)
T PRK10153        421 RIYEILAVQALVKGKTDEAYQAINKAIDLEMS-WLNYVLLGKVY  463 (517)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-HHHHHHHHHHH
Confidence            55555555555555555555555555555552 33344444333

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.51  E-value=4.9e-07  Score=83.37  Aligned_cols=93  Identities=20%  Similarity=0.206  Sum_probs=81.6

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +-++|.+|.+.|.|+.|++-+..||.++|+...+|..+|.+|+.+|+|++|++.|.+||.++|++....-.|..+-..++
T Consensus       118 ycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  118 YCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEAIEAYKKALELDPDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhc
Confidence            56899999999999999999999999999999999999999999999999999999999999999988888877777776


Q ss_pred             CHH---HHHHHHHHHH
Q 017264           85 EYE---TAKVALEKGA   97 (374)
Q Consensus        85 ~~~---eA~~~~~~a~   97 (374)
                      +..   .+...++.+.
T Consensus       198 e~~~~~~~~~~~d~~~  213 (304)
T KOG0553|consen  198 EPKSSAQASGSFDMAG  213 (304)
T ss_pred             CCCcccccccchhhhh
Confidence            665   4444444443

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.49  E-value=1.9e-06  Score=64.39  Aligned_cols=82  Identities=26%  Similarity=0.369  Sum_probs=73.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +++.+|.++...|++.+|+..+.+++...|.+..+++.+|.++...+++++|+.+|+.++.+.|.+......++.+....
T Consensus         2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999887666666665554


Q ss_pred             Hh
Q 017264          118 AE  119 (374)
Q Consensus       118 ~~  119 (374)
                      +.
T Consensus        82 ~~   83 (100)
T cd00189          82 GK   83 (100)
T ss_pred             Hh
Confidence            44

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.49  E-value=2.7e-06  Score=83.08  Aligned_cols=110  Identities=22%  Similarity=0.146  Sum_probs=97.2

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      -..+..++..+++.+|++.+.+++.++|+.+.+.+++|.+|++.|++.+|+..+...+..+|+++..|..+|++|..+|+
T Consensus       344 ~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~  423 (484)
T COG4783         344 ELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGN  423 (484)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCc
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      -.+|...+.....+...-......+..+.+
T Consensus       424 ~~~a~~A~AE~~~~~G~~~~A~~~l~~A~~  453 (484)
T COG4783         424 RAEALLARAEGYALAGRLEQAIIFLMRASQ  453 (484)
T ss_pred             hHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            999988888888777765554444444433

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=5.2e-07  Score=86.21  Aligned_cols=119  Identities=18%  Similarity=0.247  Sum_probs=100.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS-   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-   68 (374)
                      ++++.-+|.+++-..+.+.|+.+|+++|.++|++            ...+..+|.-.++.|+|..|-+.|..||.++|. 
T Consensus       203 ~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n  282 (486)
T KOG0550|consen  203 AEALYVRGLCLYYNDNADKAINHFQQALRLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSN  282 (486)
T ss_pred             hHHHHhcccccccccchHHHHHHHhhhhccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccc
Confidence            3467778888888899999999999999999887            345566777788889999999999999999996 


Q ss_pred             ---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           69 ---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        69 ---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                         ++..|+++|.+..++|+..+|+..+..++.+++.-.......+.|...|...
T Consensus       283 ~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  283 KKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKW  337 (486)
T ss_pred             cchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHH
Confidence               4678899999999999999999999999999998877777777787777665

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.46  E-value=2.4e-06  Score=82.62  Aligned_cols=97  Identities=16%  Similarity=0.137  Sum_probs=85.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM----SKAYWRKATAC   80 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~----~~a~~~lg~~~   80 (374)
                      +...|..+...|+|++|+..|.+++.+.|+++.++..+|.+|+.+|++++|+..+.+++.+.|..    ...++.+|.++
T Consensus       117 ~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~  196 (355)
T cd05804         117 LGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFY  196 (355)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHH
Confidence            34677889999999999999999999999999999999999999999999999999999987643    23566899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCC
Q 017264           81 MKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ..+|++++|+..|++++...|
T Consensus       197 ~~~G~~~~A~~~~~~~~~~~~  217 (355)
T cd05804         197 LERGDYEAALAIYDTHIAPSA  217 (355)
T ss_pred             HHCCCHHHHHHHHHHHhcccc
Confidence            999999999999999876665

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.45  E-value=5.7e-07  Score=91.22  Aligned_cols=111  Identities=19%  Similarity=0.159  Sum_probs=99.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +++.+..|...+.+++|.++..+++..+.++|-....|+.+|.|+.++++++.|..+|.+++.++|++..+|-+++-+|.
T Consensus       485 arA~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi  564 (777)
T KOG1128|consen  485 ARAQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYI  564 (777)
T ss_pred             HHHHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHH
Confidence            45556667777889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      .+++-.+|..+++.+++.+-++-.+..+..-
T Consensus       565 ~~~~k~ra~~~l~EAlKcn~~~w~iWENyml  595 (777)
T KOG1128|consen  565 RLKKKKRAFRKLKEALKCNYQHWQIWENYML  595 (777)
T ss_pred             HHhhhHHHHHHHHHHhhcCCCCCeeeechhh
Confidence            9999999999999999998766554444333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=98.44  E-value=2.9e-06  Score=90.55  Aligned_cols=111  Identities=14%  Similarity=0.137  Sum_probs=94.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +...|..+...|+|+.|+++|.++++.+|+++.++..++.+|..++++++|+..+.+++.++|.+... ..++.++..++
T Consensus       105 llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~-l~layL~~~~~  183 (822)
T PRK14574        105 LASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNY-MTLSYLNRATD  183 (822)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHH-HHHHHHHHhcc
Confidence            34457788899999999999999999999999999999999999999999999999999999986554 55566666678


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++.+|+..|+++++++|++..+...+..+...
T Consensus       184 ~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~  215 (822)
T PRK14574        184 RNYDALQASSEAVRLAPTSEEVLKNHLEILQR  215 (822)
T ss_pred             hHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            88779999999999999999876666555444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.43  E-value=2.2e-06  Score=89.41  Aligned_cols=114  Identities=16%  Similarity=0.162  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATA   79 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~   79 (374)
                      .+...++.+|-.|+|..+..++..++...-+.   ++.++.+|.+|..+|+|++|..+|-.+++.++++ .-.++.+|++
T Consensus       272 ~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm  351 (1018)
T KOG2002|consen  272 ALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQM  351 (1018)
T ss_pred             HHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHH
Confidence            46778999999999999999999999876444   4569999999999999999999999999999987 7889999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +...|++..|..||++.+...|++......++.+....
T Consensus       352 ~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~  389 (1018)
T KOG2002|consen  352 YIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHS  389 (1018)
T ss_pred             HHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhh
Confidence            99999999999999999999999999888887777665

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=98.43  E-value=6.5e-07  Score=87.76  Aligned_cols=109  Identities=26%  Similarity=0.293  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      +..+..|+..+-......||.+|.+++...|....+|.+||.++++.   |+...|+.|+..|++++|...++||+|+.+
T Consensus       375 e~~~~egnd~ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~a  454 (758)
T KOG1310|consen  375 EKFKTEGNDGLYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARA  454 (758)
T ss_pred             HHHHhhccchhhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHH
Confidence            45677888888889999999999999999999999999999999886   788899999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      +..+++|.+|+.|...+....|.+........
T Consensus       455 L~el~r~~eal~~~~alq~~~Ptd~a~~~~v~  486 (758)
T KOG1310|consen  455 LNELTRYLEALSCHWALQMSFPTDVARQNFVL  486 (758)
T ss_pred             HHHHhhHHHhhhhHHHHhhcCchhhhhhhhhh
Confidence            99999999999999988888886665444433

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.43  E-value=3.2e-06  Score=82.76  Aligned_cols=88  Identities=24%  Similarity=0.345  Sum_probs=45.1

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      .+..++..++..+|+..+.++|...|.+..++...|..+++.++++.|+..+.+|+.+.|...+.|+.|+.+|..+|+|+
T Consensus       206 LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e  285 (395)
T PF09295_consen  206 LARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFE  285 (395)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHH
Confidence            34444444445555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHH
Q 017264           88 TAKVALEK   95 (374)
Q Consensus        88 eA~~~~~~   95 (374)
                      .|+..+..
T Consensus       286 ~ALlaLNs  293 (395)
T PF09295_consen  286 NALLALNS  293 (395)
T ss_pred             HHHHHHhc
Confidence            55544443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.42  E-value=1.7e-06  Score=85.85  Aligned_cols=98  Identities=18%  Similarity=0.150  Sum_probs=93.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      -+..|..+++.|+..+|+-.|..|++.+|.++++|..||.++...++-..|+..+.+|++++|++-++++.||++|.+.|
T Consensus       288 Pf~eG~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg  367 (579)
T KOG1125|consen  288 PFKEGCNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEG  367 (579)
T ss_pred             hHHHHHHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhh
Confidence            47799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCC
Q 017264           85 EYETAKVALEKGASLAPG  102 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~  102 (374)
                      .-.+|+.+|.+=++..|.
T Consensus       368 ~q~~Al~~L~~Wi~~~p~  385 (579)
T KOG1125|consen  368 LQNQALKMLDKWIRNKPK  385 (579)
T ss_pred             hHHHHHHHHHHHHHhCcc
Confidence            999999999887766654

>TIGR00540 hemY_coli hemY protein

Probab=98.41  E-value=1.1e-05  Score=80.25  Aligned_cols=118  Identities=14%  Similarity=0.106  Sum_probs=103.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM   81 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-~a~~~lg~~~~   81 (374)
                      .....+|...+..|+|..|.+.+.++.+..|.....+...|.++.++|+++.|..++.++.+..|+.. .+...++.++.
T Consensus        85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l  164 (409)
T TIGR00540        85 QKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILL  164 (409)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHH
Confidence            45577899999999999999999999999998888888889999999999999999999999888875 45666799999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ..|+++.|+..++..++..|+++.+...+..+....+..
T Consensus       165 ~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~  203 (409)
T TIGR00540       165 AQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAW  203 (409)
T ss_pred             HCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhH
Confidence            999999999999999999999998888888877666554

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.40  E-value=1.2e-05  Score=77.79  Aligned_cols=101  Identities=19%  Similarity=0.106  Sum_probs=83.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH-------------------------------------HHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF-------------------------------------ADRAQAS   46 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~-------------------------------------~~ra~~~   46 (374)
                      .....|..++..|++++|+..+.+++..+|.+..++                                     ..+|.++
T Consensus        45 ~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~  124 (355)
T cd05804          45 RAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKLHLGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGL  124 (355)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHhHHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHH
Confidence            345678888899999999999999988888775432                                     2345567


Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ..+|++++|+..+++++.++|++..++..+|.+++..|++++|+.+|++++...|.+.
T Consensus       125 ~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~  182 (355)
T cd05804         125 EEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSS  182 (355)
T ss_pred             HHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCc
Confidence            7788999999999999999999988999999999999999999999999998877543

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.39  E-value=1.8e-06  Score=75.10  Aligned_cols=87  Identities=16%  Similarity=0.137  Sum_probs=75.9

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        33 p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      +..+.+++.+|.+|...|++++|+..|++++.+.++.   ..+++.+|.++..+|++++|+.+|++++.+.|.+......
T Consensus        32 ~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~  111 (172)
T PRK02603         32 AKEAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNN  111 (172)
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHH
Confidence            3557789999999999999999999999999987753   5789999999999999999999999999999999887777


Q ss_pred             HHHHHHHHHh
Q 017264          110 IKECEERIAE  119 (374)
Q Consensus       110 ~~~~~~~l~~  119 (374)
                      ++.+...++.
T Consensus       112 lg~~~~~~g~  121 (172)
T PRK02603        112 IAVIYHKRGE  121 (172)
T ss_pred             HHHHHHHcCC
Confidence            7777655443

>PRK11906 transcriptional regulator; Provisional

Probab=98.39  E-value=6.8e-06  Score=80.59  Aligned_cols=111  Identities=10%  Similarity=0.017  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHH---HhCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCC
Q 017264            4 DLEKKAKEAFIDDY---FELAYDLYSQAI---EISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPS   68 (374)
Q Consensus         4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL---~~~p~~~~~~~~ra~~~~~l---------~~~~~Al~~~~~al~l~p~   68 (374)
                      .++.+|...+.++.   .+.|+.+|.+|+   .++|..+.+|..+|.||..+         ....+|++.+++|++++|.
T Consensus       257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~  336 (458)
T PRK11906        257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTV  336 (458)
T ss_pred             HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCC
Confidence            45666766655554   467889999999   88999999999999999775         3456788999999999999


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           69 MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ++.+++.+|.++...++++.|...|++++.++|+......+.+.+.
T Consensus       337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~  382 (458)
T PRK11906        337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVH  382 (458)
T ss_pred             CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHH
Confidence            9999999999999999999999999999999999988776666643

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.39  E-value=3.8e-07  Score=68.36  Aligned_cols=65  Identities=20%  Similarity=0.342  Sum_probs=52.1

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      .+.++.++|.+|..+|+|++|+.+|++++.+.       +..+.+++++|.++..+|++++|+.+|++++++
T Consensus         4 ~a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    4 TANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            35678889999999999999999999888662       123667888999999999999999999988765

...

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=98.38  E-value=3e-06  Score=87.81  Aligned_cols=98  Identities=18%  Similarity=0.087  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +-+++.+.+++..|.|.+|+.+|..++...+. +..+|+.+|.||..++.|++|++.|.+++.++|++.++.+.++.++.
T Consensus       415 dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~p~~~D~Ri~Lasl~~  494 (895)
T KOG2076|consen  415 DLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILAPDNLDARITLASLYQ  494 (895)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcCCCchhhhhhHHHHHH
Confidence            45678999999999999999999999988654 46789999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC
Q 017264           82 KLEEYETAKVALEKGASLA  100 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~  100 (374)
                      .+|+.++|++.++....-+
T Consensus       495 ~~g~~EkalEtL~~~~~~D  513 (895)
T KOG2076|consen  495 QLGNHEKALETLEQIINPD  513 (895)
T ss_pred             hcCCHHHHHHHHhcccCCC
Confidence            9999999999999866333

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.36  E-value=1.6e-05  Score=67.23  Aligned_cols=93  Identities=18%  Similarity=0.167  Sum_probs=80.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..+..|..++..|+|++|+..|..++...++.   ..+.+.+|.+++.+|+|++|+..+.. +.-.+-.+.++..+|.+|
T Consensus        50 A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~Al~~L~~-~~~~~~~~~~~~~~Gdi~  128 (145)
T PF09976_consen   50 AALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDEALATLQQ-IPDEAFKALAAELLGDIY  128 (145)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHh-ccCcchHHHHHHHHHHHH
Confidence            45779999999999999999999999987665   45788899999999999999999865 333444567888999999


Q ss_pred             HHhcCHHHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGA   97 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~   97 (374)
                      ...|++++|+..|++++
T Consensus       129 ~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  129 LAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHCCCHHHHHHHHHHhC
Confidence            99999999999999874

>PRK11906 transcriptional regulator; Provisional

Probab=98.35  E-value=6.2e-06  Score=80.84  Aligned_cols=91  Identities=14%  Similarity=0.145  Sum_probs=85.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE   94 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (374)
                      ..+-.+|+.+..+|++++|.++.++..+|.++.-.++++.|+..|++|+.++|+.+.+|+..|.+++..|+.++|+..++
T Consensus       317 ~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~  396 (458)
T PRK11906        317 ELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICID  396 (458)
T ss_pred             hHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            34567899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhcCCCChh
Q 017264           95 KGASLAPGDSR  105 (374)
Q Consensus        95 ~a~~l~p~~~~  105 (374)
                      ++++++|....
T Consensus       397 ~alrLsP~~~~  407 (458)
T PRK11906        397 KSLQLEPRRRK  407 (458)
T ss_pred             HHhccCchhhH
Confidence            99999997553

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.35  E-value=1.3e-06  Score=81.41  Aligned_cols=94  Identities=15%  Similarity=0.139  Sum_probs=56.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      ...|..+-..+++++|+++|..+++++|.|.+++...|..|+--++.+-|+.+|++.+++.-.+++.+.++|.||+..++
T Consensus       294 ~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ  373 (478)
T KOG1129|consen  294 LGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQ  373 (478)
T ss_pred             hhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcc
Confidence            34555666666666677777666666666655555555555555555555555555555555555556666666666666


Q ss_pred             HHHHHHHHHHHHhc
Q 017264           86 YETAKVALEKGASL   99 (374)
Q Consensus        86 ~~eA~~~~~~a~~l   99 (374)
                      |+-++-+|++++..
T Consensus       374 ~D~~L~sf~RAlst  387 (478)
T KOG1129|consen  374 IDLVLPSFQRALST  387 (478)
T ss_pred             hhhhHHHHHHHHhh
Confidence            65555555555544

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.34  E-value=5.7e-06  Score=66.34  Aligned_cols=84  Identities=14%  Similarity=0.145  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHH
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNL  109 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~  109 (374)
                      +..++.+|..+.+.|++++|+..|..++..+|++   ..+++.+|.+++..|++++|+.+|+.++...|++.   .+...
T Consensus         2 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~   81 (119)
T TIGR02795         2 EEAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLK   81 (119)
T ss_pred             cHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHH
Confidence            4578999999999999999999999999999876   67899999999999999999999999999998863   34555


Q ss_pred             HHHHHHHHHh
Q 017264          110 IKECEERIAE  119 (374)
Q Consensus       110 ~~~~~~~l~~  119 (374)
                      ++.+...++.
T Consensus        82 ~~~~~~~~~~   91 (119)
T TIGR02795        82 LGMSLQELGD   91 (119)
T ss_pred             HHHHHHHhCC
Confidence            5555554433

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.30  E-value=8.2e-06  Score=86.76  Aligned_cols=112  Identities=13%  Similarity=0.063  Sum_probs=94.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~------------   70 (374)
                      ..+......+...+++++|+..+..++...|+...+|+.+|..|++.+++.+|...  .++.+.+...            
T Consensus        32 ~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~~~~~~~~~~~ve~~~~~i  109 (906)
T PRK14720         32 KELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLIDSFSQNLKWAIVEHICDKI  109 (906)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhhhcccccchhHHHHHHHHH
Confidence            34567778888999999999999999999999999999999999998888776555  5555544444            


Q ss_pred             -------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           71 -------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        71 -------~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                             .+++.+|.||-.+|++++|...|+++++++|+|+.+...++-....
T Consensus       110 ~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae  162 (906)
T PRK14720        110 LLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEE  162 (906)
T ss_pred             HhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHH
Confidence                   8999999999999999999999999999999999887777655443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=98.28  E-value=8.9e-06  Score=84.99  Aligned_cols=114  Identities=14%  Similarity=0.090  Sum_probs=103.4

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      |++.++..|..+...|+|++|-.+|.+++..++++ ...++.+|+.|++.|+++.|+..|++.+...|++.+....+|.+
T Consensus       306 ~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~L  385 (1018)
T KOG2002|consen  306 KAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCL  385 (1018)
T ss_pred             HHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhH
Confidence            46778999999999999999999999999999998 78899999999999999999999999999999999999999999


Q ss_pred             HHHhc----CHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           80 CMKLE----EYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        80 ~~~lg----~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      |...+    ..+.|...+.++++..|.+......++.+.
T Consensus       386 ya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~  424 (1018)
T KOG2002|consen  386 YAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLL  424 (1018)
T ss_pred             HHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            98886    668899999999999998887665555544

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.27  E-value=7.5e-06  Score=81.15  Aligned_cols=115  Identities=19%  Similarity=0.202  Sum_probs=100.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-------CCHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-------SMSKAYWRKAT   78 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-------~~~~a~~~lg~   78 (374)
                      +-.|..++..+++.-|-..|.+|+.+.|+++..+..+|.+.+..+.|.+|+.+|..++..-+       .....+.++|.
T Consensus       384 LYlgmey~~t~n~kLAe~Ff~~A~ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH  463 (611)
T KOG1173|consen  384 LYLGMEYMRTNNLKLAEKFFKQALAIAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGH  463 (611)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHH
Confidence            45788889999999999999999999999999999999999999999999999998884322       23445789999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++.+++.|.+|+.+|++++.+.|.+......++-+...+++.
T Consensus       464 ~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnl  505 (611)
T KOG1173|consen  464 AYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNL  505 (611)
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcCh
Confidence            999999999999999999999999999999999988888776

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=98.25  E-value=2.6e-06  Score=63.78  Aligned_cols=64  Identities=19%  Similarity=0.307  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh---CC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI---SP----NSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~---~p----~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +..+.+.|..++..|+|++|+.+|.+++.+   .+    ..+.++.++|.||..+|++++|+..+++++.+
T Consensus         5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i   75 (78)
T PF13424_consen    5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI   75 (78)
T ss_dssp             HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            457889999999999999999999999977   21    22678999999999999999999999999976

...

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.25  E-value=3.9e-05  Score=69.40  Aligned_cols=113  Identities=17%  Similarity=0.093  Sum_probs=101.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC--
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE--   85 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~--   85 (374)
                      +--.+-..|.--+||+.++..|+.-+++.++|..+|..|+..|+|+.|.=+++..+-+.|.++..+.|+|.++|-+|.  
T Consensus       126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~e  205 (289)
T KOG3060|consen  126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAE  205 (289)
T ss_pred             HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHH
Confidence            334555677778999999999999999999999999999999999999999999999999999999999999998764  


Q ss_pred             -HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           86 -YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        86 -~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                       +..|..+|.++++++|.+......+-.|...+.+.
T Consensus       206 N~~~arkyy~~alkl~~~~~ral~GI~lc~~~la~~  241 (289)
T KOG3060|consen  206 NLELARKYYERALKLNPKNLRALFGIYLCGSALAQI  241 (289)
T ss_pred             HHHHHHHHHHHHHHhChHhHHHHHHHHHHHHHHHHH
Confidence             67899999999999998888888888888777755

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.24  E-value=5.1e-06  Score=77.46  Aligned_cols=118  Identities=13%  Similarity=0.000  Sum_probs=88.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+.-.+.+|....+...|+..|.+.|+..|.+..++...|.+|..++++++|++.|..++.++|.+.++.--.|..||.
T Consensus       257 dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY  336 (478)
T KOG1129|consen  257 DTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFY  336 (478)
T ss_pred             hHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeecccc
Confidence            44555666777777777777777777777777777777777777777888888888888888888777777777777777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      -++.+-|+.+|++.+++.-.++++...++.|--.-++.
T Consensus       337 ~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~  374 (478)
T KOG1129|consen  337 DNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQI  374 (478)
T ss_pred             CCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcch
Confidence            88888888888888887777777777777776554443

>TIGR00540 hemY_coli hemY protein

Probab=98.22  E-value=1.8e-05  Score=78.65  Aligned_cols=115  Identities=8%  Similarity=-0.029  Sum_probs=94.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHH--HHHHHHHHHccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELF--ADRAQASIKLQNFTEAVADANRAIELEPSMS--KAYWRKATA   79 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~--~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~--~a~~~lg~~   79 (374)
                      .....|..+...|++++|+..+.++++..|++....  ..+...++..++...++..++++++.+|+++  ..+..+|.+
T Consensus       265 l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l  344 (409)
T TIGR00540       265 LKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQL  344 (409)
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHH
Confidence            356778899999999999999999999999987532  2233344456888999999999999999999  888899999


Q ss_pred             HHHhcCHHHHHHHHH--HHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           80 CMKLEEYETAKVALE--KGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~--~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +++.|+|++|..+|+  .+++..|++.... .++.+..+++.
T Consensus       345 ~~~~~~~~~A~~~le~a~a~~~~p~~~~~~-~La~ll~~~g~  385 (409)
T TIGR00540       345 LMKHGEFIEAADAFKNVAACKEQLDANDLA-MAADAFDQAGD  385 (409)
T ss_pred             HHHcccHHHHHHHHHHhHHhhcCCCHHHHH-HHHHHHHHcCC
Confidence            999999999999999  6788889776544 66666665544

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.21  E-value=2.4e-05  Score=72.98  Aligned_cols=116  Identities=16%  Similarity=0.214  Sum_probs=93.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      +....+.|...++|.+||+.-.+.+.+.+..     +.+|+.+|..+....+++.|+..+.+|++.+|+...+-+.+|.+
T Consensus       144 lqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v  223 (389)
T COG2956         144 LQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRV  223 (389)
T ss_pred             HHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHH
Confidence            4455667777788888888887777776654     46777788887778889999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEE  120 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~-~~~~~~~~~~~~l~~~  120 (374)
                      +...|+|..|+..++.+++.+|+.. ++...+..|...+++.
T Consensus       224 ~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~  265 (389)
T COG2956         224 ELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKP  265 (389)
T ss_pred             HHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCH
Confidence            9999999999999999998888754 4666677777776665

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.19  E-value=6.6e-05  Score=74.31  Aligned_cols=117  Identities=14%  Similarity=0.085  Sum_probs=84.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHH-HHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADR-AQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~r-a~~~~~l~~~~~Al~~~~~al~l~p~~~~-a~~~lg~~~   80 (374)
                      ...+..|...+..|||+.|.+...++-...++ +.+++.+ +.+..++|+++.|..++.++.+.+|+... ..+..+.++
T Consensus        85 ~~~~~~gl~a~~eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~  163 (398)
T PRK10747         85 RKQTEQALLKLAEGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQ  163 (398)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHH
Confidence            34567788888888888888777765554333 4444444 45557888888888888888888887643 334558888


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ...|+++.|+..+++..+.+|+++.+...+..+..+.+.-
T Consensus       164 l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw  203 (398)
T PRK10747        164 LARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAW  203 (398)
T ss_pred             HHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhH
Confidence            8888888888888888888888888777777776665544

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.18  E-value=3.3e-05  Score=71.67  Aligned_cols=104  Identities=16%  Similarity=0.143  Sum_probs=91.6

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC---HHHHHHH
Q 017264           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE---YETAKVA   92 (374)
Q Consensus        16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~---~~eA~~~   92 (374)
                      ...+..+..+..-|..+|++++-|..+|.+|+.++++..|+..|.+|+++.|++++.+..+|.+++...+   -.++...
T Consensus       136 ~~~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~l  215 (287)
T COG4235         136 QEMEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARAL  215 (287)
T ss_pred             ccHHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHH
Confidence            3467778888999999999999999999999999999999999999999999999999999999876443   4688899


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           93 LEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        93 ~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |.+++.++|+|......++.....-++
T Consensus       216 l~~al~~D~~~iral~lLA~~afe~g~  242 (287)
T COG4235         216 LRQALALDPANIRALSLLAFAAFEQGD  242 (287)
T ss_pred             HHHHHhcCCccHHHHHHHHHHHHHccc
Confidence            999999999999988888776554433

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=98.17  E-value=8.7e-05  Score=67.56  Aligned_cols=103  Identities=21%  Similarity=0.189  Sum_probs=88.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~   75 (374)
                      +..|.+.|...++.|+|.+|+..|..+....|.+   ..+.+.++.++++.++|++|+..+++-+++.|+++   -++|.
T Consensus        34 ~~~LY~~g~~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          34 ASELYNEGLTELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            4578999999999999999999999999998776   46889999999999999999999999999998754   47788


Q ss_pred             HHHHHHHhcC--------HHHHHHHHHHHHhcCCCCh
Q 017264           76 KATACMKLEE--------YETAKVALEKGASLAPGDS  104 (374)
Q Consensus        76 lg~~~~~lg~--------~~eA~~~~~~a~~l~p~~~  104 (374)
                      +|.+++..-+        -.+|+..|+..++..|+..
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~  150 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSR  150 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCc
Confidence            8988875322        3578888889999999865

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=98.17  E-value=5.3e-05  Score=76.93  Aligned_cols=80  Identities=20%  Similarity=0.181  Sum_probs=71.2

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++++.+|++|..+|++++|+.++++||...|..++.|+.+|.+|-+.|++.+|..+++.+..++..|.-+-.-..+..-+
T Consensus       195 w~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  195 WTLYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            57788999999999999999999999999999999999999999999999999999999999999988665555554433

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.15  E-value=1.3e-05  Score=80.71  Aligned_cols=98  Identities=27%  Similarity=0.280  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--------   66 (374)
                      ..+...|..|...++|.+|+.+|.+||.+        +|.-+.++.++|.+|.+.|+|.+|..+|++|+.+-        
T Consensus       242 ~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~  321 (508)
T KOG1840|consen  242 SMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASH  321 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccCh
Confidence            44556999999999999999999999998        44447899999999999999999999999999863        


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      +.-+..+..++.++..++++++|+..|++++++.
T Consensus       322 ~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~  355 (508)
T KOG1840|consen  322 PEVAAQLSELAAILQSMNEYEEAKKLLQKALKIY  355 (508)
T ss_pred             HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHH
Confidence            2345677789999999999999999999998763

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=1.3e-05  Score=76.87  Aligned_cols=115  Identities=18%  Similarity=0.167  Sum_probs=94.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH----------------------------------HHHcc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA----------------------------------SIKLQ   50 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~----------------------------------~~~l~   50 (374)
                      +...|..++..|++.+|+..|.++..++|.+....-..|..                                  ++..+
T Consensus       235 l~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~~~~l~~~K  314 (564)
T KOG1174|consen  235 MMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVHAQLLYDEK  314 (564)
T ss_pred             HHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhhhhhhhhhh
Confidence            45789999999999999999999999999885433333322                                  23347


Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           51 NFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        51 ~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|..|+.+.+++|+++|++..+++.+|.++.++|+..+|+..|+.++.+.|-+-.+...+-.|.-..+.
T Consensus       315 ~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  315 KFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhch
Confidence            788899999999999999999999999999999999999999999999999887776666665544433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=98.11  E-value=1.6e-05  Score=79.97  Aligned_cols=97  Identities=21%  Similarity=0.182  Sum_probs=84.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------CC
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------EP   67 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~p   67 (374)
                      .+...|..++.+|+|+.|+.++.+||+.        .+.-...+..+|..|..+++|.+|+..|.+|+.+        +|
T Consensus       201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~  280 (508)
T KOG1840|consen  201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP  280 (508)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence            4556899999999999999999999998        5554566666999999999999999999999976        23


Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           68 SMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      .-+.++.+||.+|+..|+|++|..+|++++++.
T Consensus       281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~  313 (508)
T KOG1840|consen  281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIY  313 (508)
T ss_pred             HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHH
Confidence            346789999999999999999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.10  E-value=2.5e-05  Score=75.59  Aligned_cols=112  Identities=15%  Similarity=0.015  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +++++.|..+-..|+.++|++.|-+.-.+--++++.++.+|.+|..+.+...|++.+.++..+-|+++..+-.+|.+|-+
T Consensus       525 ealfniglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydq  604 (840)
T KOG2003|consen  525 EALFNIGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQ  604 (840)
T ss_pred             HHHHHhcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhc
Confidence            57889999999999999999999887666678889999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .|+-.+|.+|+-...+..|-|.+...|++...
T Consensus       605 egdksqafq~~ydsyryfp~nie~iewl~ayy  636 (840)
T KOG2003|consen  605 EGDKSQAFQCHYDSYRYFPCNIETIEWLAAYY  636 (840)
T ss_pred             ccchhhhhhhhhhcccccCcchHHHHHHHHHH
Confidence            99988888888888888888888888876543

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=98.09  E-value=6.4e-05  Score=70.18  Aligned_cols=104  Identities=14%  Similarity=0.136  Sum_probs=95.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-SKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~   80 (374)
                      |+-+-..|..+....+.+.|+..+.+|+..+|.+..+-+.+|.++...|+|+.|+..++.+++.+|.. +.+.-.+..||
T Consensus       180 AqfyCELAq~~~~~~~~d~A~~~l~kAlqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y  259 (389)
T COG2956         180 AQFYCELAQQALASSDVDRARELLKKALQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY  259 (389)
T ss_pred             HHHHHHHHHHHhhhhhHHHHHHHHHHHHhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence            44566788899999999999999999999999999999999999999999999999999999999975 67888999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      ..+|+.++.+..+.++.+..++...
T Consensus       260 ~~lg~~~~~~~fL~~~~~~~~g~~~  284 (389)
T COG2956         260 AQLGKPAEGLNFLRRAMETNTGADA  284 (389)
T ss_pred             HHhCCHHHHHHHHHHHHHccCCccH
Confidence            9999999999999999998876553

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.09  E-value=2.3e-05  Score=75.18  Aligned_cols=108  Identities=19%  Similarity=0.203  Sum_probs=100.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++-.|..++..++|..|+.+-.++|+.+|++..+|+-.|.++..+++.++|+-.|+.|..+.|...+.|-.+-.+|..
T Consensus       301 ~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA  380 (564)
T KOG1174|consen  301 SHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLA  380 (564)
T ss_pred             hhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHh
Confidence            34667788999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      .|++.+|......+.+.-|.+......+
T Consensus       381 ~~~~kEA~~~An~~~~~~~~sA~~LtL~  408 (564)
T KOG1174|consen  381 QKRFKEANALANWTIRLFQNSARSLTLF  408 (564)
T ss_pred             hchHHHHHHHHHHHHHHhhcchhhhhhh
Confidence            9999999999999999988887665555

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.08  E-value=2e-05  Score=68.84  Aligned_cols=68  Identities=28%  Similarity=0.388  Sum_probs=64.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA   72 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a   72 (374)
                      +.++|.++++.+.++.||..+++||+++|....++.+||.+|.++.+|++|+.+|.+.++++|....+
T Consensus       137 y~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~eealeDyKki~E~dPs~~ea  204 (271)
T KOG4234|consen  137 YSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKYEEALEDYKKILESDPSRREA  204 (271)
T ss_pred             HhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCcchHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999987643

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=98.08  E-value=6e-05  Score=74.61  Aligned_cols=113  Identities=12%  Similarity=0.089  Sum_probs=92.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .....|..+...|++++|...+.++++.. .+..+...++.+  ..+++.+++..++..++.+|+++..++.+|.++...
T Consensus       265 ~~~~~A~~l~~~g~~~~A~~~L~~~l~~~-~~~~l~~l~~~l--~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~  341 (398)
T PRK10747        265 LQVAMAEHLIECDDHDTAQQIILDGLKRQ-YDERLVLLIPRL--KTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKH  341 (398)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCHHHHHHHhhc--cCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHC
Confidence            34567889999999999999999999954 455544444444  459999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++|++|..+|++++...|++..+ .++..+..+++..
T Consensus       342 ~~~~~A~~~le~al~~~P~~~~~-~~La~~~~~~g~~  377 (398)
T PRK10747        342 GEWQEASLAFRAALKQRPDAYDY-AWLADALDRLHKP  377 (398)
T ss_pred             CCHHHHHHHHHHHHhcCCCHHHH-HHHHHHHHHcCCH
Confidence            99999999999999999987653 3566666655443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.08  E-value=9.9e-05  Score=63.94  Aligned_cols=101  Identities=22%  Similarity=0.209  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~-~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~   80 (374)
                      .-...|+.+...|+|.+|..+|.+++.- ..+++..+..+|.+.+..+++..|...++...+.+|.  .++.++.+|..|
T Consensus        91 nr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~l  170 (251)
T COG4700          91 NRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTL  170 (251)
T ss_pred             HHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHH
Confidence            3467899999999999999999999874 6778999999999999999999999999999999984  678899999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ..+|.|.+|...|+.++...|+-.
T Consensus       171 aa~g~~a~Aesafe~a~~~ypg~~  194 (251)
T COG4700         171 AAQGKYADAESAFEVAISYYPGPQ  194 (251)
T ss_pred             HhcCCchhHHHHHHHHHHhCCCHH
Confidence            999999999999999999998754

>PRK15331 chaperone protein SicA; Provisional

Probab=98.05  E-value=2.4e-05  Score=66.77  Aligned_cols=89  Identities=11%  Similarity=0.014  Sum_probs=80.7

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        32 ~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      .++..+..+..|.-++..|++++|...|.-++.+++.+++.++.||.++..+++|+.|+.+|..+.-++++++......+
T Consensus        33 s~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ag  112 (165)
T PRK15331         33 PQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTG  112 (165)
T ss_pred             CHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHH
Confidence            44446788889999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHhh
Q 017264          112 ECEERIAEE  120 (374)
Q Consensus       112 ~~~~~l~~~  120 (374)
                      .|.-.+++.
T Consensus       113 qC~l~l~~~  121 (165)
T PRK15331        113 QCQLLMRKA  121 (165)
T ss_pred             HHHHHhCCH
Confidence            888776665

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.04  E-value=8.7e-06  Score=61.95  Aligned_cols=58  Identities=22%  Similarity=0.347  Sum_probs=51.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA   62 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~a   62 (374)
                      .++..|.++++.|+|.+|+..+++ +..++.+...++.+|.|++++|+|++|+..+++|
T Consensus        27 ~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~~~   84 (84)
T PF12895_consen   27 YLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKALEKA   84 (84)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHhcC
Confidence            356689999999999999999999 8888888888888999999999999999999875

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.02  E-value=9e-05  Score=79.02  Aligned_cols=112  Identities=11%  Similarity=0.059  Sum_probs=96.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----------------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE----------------   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~----------------   66 (374)
                      .+++..|.+|-+.|++++|...|.++|+++|+++.++.++|..|... ++++|++++.+|+...                
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~~i~~kq~~~~~e~W~k~  195 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAITYLKKAIYRFIKKKQYVGIEEIWSKL  195 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHHHHHHHHHHHHHhhhcchHHHHHHHHH
Confidence            36788999999999999999999999999999999999999999999 9999999999988652                


Q ss_pred             ----CCCHHHHHH--------HH------------HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           67 ----PSMSKAYWR--------KA------------TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        67 ----p~~~~a~~~--------lg------------~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                          |.+.+.+++        ++            .+|...++|++++..|+.++.++|.|.-+...+..|..
T Consensus       196 ~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        196 VHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence                333333221        23            67788999999999999999999999999999988887

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=98.02  E-value=6.5e-05  Score=75.81  Aligned_cols=107  Identities=24%  Similarity=0.264  Sum_probs=82.7

Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017264           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA   92 (374)
Q Consensus        13 ~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~   92 (374)
                      +.+..|+.|..+|.+|-...|. ..+|+.-+....-+++.++|++.++.+|+..|.+.+.|+.+|+++.++++.+.|...
T Consensus       629 ~en~e~eraR~llakar~~sgT-eRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~a  707 (913)
T KOG0495|consen  629 FENDELERARDLLAKARSISGT-ERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREA  707 (913)
T ss_pred             hccccHHHHHHHHHHHhccCCc-chhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHH
Confidence            3444444444444444443333 344555555556678999999999999999999999999999999999999999999


Q ss_pred             HHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           93 LEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        93 ~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |..+++..|...-+...+.+++.+.++.
T Consensus       708 Y~~G~k~cP~~ipLWllLakleEk~~~~  735 (913)
T KOG0495|consen  708 YLQGTKKCPNSIPLWLLLAKLEEKDGQL  735 (913)
T ss_pred             HHhccccCCCCchHHHHHHHHHHHhcch
Confidence            9999999999998888888888876543

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=98.01  E-value=7e-05  Score=78.64  Aligned_cols=104  Identities=15%  Similarity=0.140  Sum_probs=94.4

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      |+..+...|.....+++|++||+...++|+.+|+|..+++.+|.++..++. .++|.+.|..|.+++|++.-+|-.+|..
T Consensus         1 ~vK~aLK~Ak~al~nk~YeealEqskkvLk~dpdNYnA~vFLGvAl~sl~q~le~A~ehYv~AaKldpdnlLAWkGL~nL   80 (1238)
T KOG1127|consen    1 EVKTALKSAKDALRNKEYEEALEQSKKVLKEDPDNYNAQVFLGVALWSLGQDLEKAAEHYVLAAKLDPDNLLAWKGLGNL   80 (1238)
T ss_pred             ChhhHHHHHHHHHhhccHHHHHHHHHHHHhcCCCcchhhhHHHHHHHhccCCHHHHHHHHHHHHhcChhhhHHHHHHHHH
Confidence            456677889999999999999999999999999999999999999999988 9999999999999999999999999998


Q ss_pred             HHH---hcCHHHHHHHHHHHHhcCCCCh
Q 017264           80 CMK---LEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        80 ~~~---lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      |..   .-+++++..+|++++.+.++..
T Consensus        81 ye~~~dIl~ld~~~~~yq~~~l~le~q~  108 (1238)
T KOG1127|consen   81 YERYNDILDLDRAAKCYQRAVLILENQS  108 (1238)
T ss_pred             HHccchhhhhhHhHHHHHHHHHhhhhhh
Confidence            876   5568899999999887776543

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.01  E-value=4.2e-05  Score=62.43  Aligned_cols=83  Identities=19%  Similarity=0.155  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC---ChhHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPG---DSRFTNLI  110 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~---~~~~~~~~  110 (374)
                      .+++.+|.+|-.+|+.++|+..|++++.....   -..+++.+|.+|..+|++++|+..|+.++...|+   +..+...+
T Consensus         2 ~~~~~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~   81 (120)
T PF12688_consen    2 RALYELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFL   81 (120)
T ss_pred             chHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHH
Confidence            46889999999999999999999999997643   3679999999999999999999999999999888   66666666


Q ss_pred             HHHHHHHHh
Q 017264          111 KECEERIAE  119 (374)
Q Consensus       111 ~~~~~~l~~  119 (374)
                      +.+...++.
T Consensus        82 Al~L~~~gr   90 (120)
T PF12688_consen   82 ALALYNLGR   90 (120)
T ss_pred             HHHHHHCCC
Confidence            655444333

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.01  E-value=7e-05  Score=76.80  Aligned_cols=115  Identities=17%  Similarity=0.096  Sum_probs=107.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      ...|..+...++-++|...+.+|-.++|..+..|+.+|.++...|++.+|.+.|..|+.++|++..+.-.+|.++...|+
T Consensus       654 llaa~~~~~~~~~~~a~~CL~Ea~~~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~lle~G~  733 (799)
T KOG4162|consen  654 LLAADLFLLSGNDDEARSCLLEASKIDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLLELGS  733 (799)
T ss_pred             HHHHHHHHhcCCchHHHHHHHHHHhcchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCC
Confidence            45677778888889999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH--HHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           86 YETAKV--ALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        86 ~~eA~~--~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      -.-|..  .+..+++++|.+.+++..++.+.++++..
T Consensus       734 ~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~  770 (799)
T KOG4162|consen  734 PRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDS  770 (799)
T ss_pred             cchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccch
Confidence            888888  99999999999999999999998887765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=97.99  E-value=0.0001  Score=72.23  Aligned_cols=107  Identities=19%  Similarity=0.195  Sum_probs=96.7

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      .+-..+.|+.|+.+|.+....+|+   +...+|.+|...++..+|++.+.+++...|.+...+...+..|...++|+.|+
T Consensus       178 ~l~~t~~~~~ai~lle~L~~~~pe---v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~lAL  254 (395)
T PF09295_consen  178 YLSLTQRYDEAIELLEKLRERDPE---VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYELAL  254 (395)
T ss_pred             HHhhcccHHHHHHHHHHHHhcCCc---HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHH
Confidence            344567899999999999888876   45568889999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           91 VALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+++++..+.|++...+..+++|.-.++..
T Consensus       255 ~iAk~av~lsP~~f~~W~~La~~Yi~~~d~  284 (395)
T PF09295_consen  255 EIAKKAVELSPSEFETWYQLAECYIQLGDF  284 (395)
T ss_pred             HHHHHHHHhCchhHHHHHHHHHHHHhcCCH
Confidence            999999999999999999999999887776

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.99  E-value=0.00029  Score=63.02  Aligned_cols=105  Identities=16%  Similarity=0.083  Sum_probs=84.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCC
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ-----------NFTEAVADANRAIELEPS   68 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~-----------~~~~Al~~~~~al~l~p~   68 (374)
                      +.++..|..++..|+|..|+..|++.+...|++   ..+++.+|.|++.+.           ...+|+..|+..+...|+
T Consensus        43 ~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~  122 (203)
T PF13525_consen   43 QAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQIPGILRSDRDQTSTRKAIEEFEELIKRYPN  122 (203)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHHHHHH-TT---HHHHHHHHHHHHHHHH-TT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhCccchhcccChHHHHHHHHHHHHHHHHCcC
Confidence            467889999999999999999999999999887   468889999987653           345899999999999997


Q ss_pred             CHH-----------------HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           69 MSK-----------------AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        69 ~~~-----------------a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      ..-                 --+..|..|++.|.|..|+..|+.+++..|+.+...
T Consensus       123 S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp~t~~~~  178 (203)
T PF13525_consen  123 SEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYPDTPAAE  178 (203)
T ss_dssp             STTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHSTTSHHHH
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCCchHH
Confidence            421                 224468899999999999999999999999987543

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.95  E-value=2e-05  Score=52.26  Aligned_cols=42  Identities=26%  Similarity=0.238  Sum_probs=29.1

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      .++..+|.+|..+|++++|+..|+++++++|+++.+++.+|.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            456667777777777777777777777777777777766664

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.93  E-value=0.0003  Score=59.16  Aligned_cols=95  Identities=21%  Similarity=0.194  Sum_probs=77.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR   61 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------------------~~~~~~ra~~~~~l~~~~~Al~~~~~   61 (374)
                      .+...|......++...++..+.+++.+....                      ..++..++.++...|++++|+..+.+
T Consensus         8 ~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~   87 (146)
T PF03704_consen    8 ALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEALRLLQR   87 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence            45566777888899999999999999984332                      34556677778889999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264           62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (374)
Q Consensus        62 al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~   98 (374)
                      ++.++|.+-.+|..+-.+|...|++.+|+..|+++.+
T Consensus        88 ~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   88 ALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998743

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>cd06472 ACD_ScHsp26_like Alpha crystallin domain (ACD) found in Saccharomyces cerevisiae (Sc) small heat shock protein (Hsp)26 and similar proteins

Probab=97.92  E-value=5.1e-05  Score=58.96  Aligned_cols=76  Identities=16%  Similarity=0.210  Sum_probs=63.9

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC-----C----------CCeeeeccccccccccCceEEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----G----------EEAYHFQPRLFGKIIPAKCRYE  238 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~----------~~~y~~~~~L~~~I~p~~s~~~  238 (374)
                      |.||+++++.+.|.+.++|+.++++.|.+..+ .|+|+....     .          ...|.-.+.|...|+++..+..
T Consensus         1 ~~dv~E~~~~~~i~~~lPGv~~edi~i~v~~~~~L~I~g~~~~~~~~~~~~~~~~e~~~g~f~r~i~LP~~v~~~~i~A~   80 (92)
T cd06472           1 RVDWKETPEAHVFKADVPGVKKEDVKVEVEDGRVLRISGERKKEEEKKGDDWHRVERSSGRFVRRFRLPENADADEVKAF   80 (92)
T ss_pred             CccEEEcCCeEEEEEECCCCChHhEEEEEeCCCEEEEEEEecccccccCCCEEEEEEeccEEEEEEECCCCCCHHHCEEE
Confidence            57999999999999999999999999999874 788886421     1          1246667899999999988888


Q ss_pred             EcCcEEEEEEee
Q 017264          239 VLSTKVEIRLAK  250 (374)
Q Consensus       239 v~~~kiei~L~K  250 (374)
                      ....-++|+|-|
T Consensus        81 ~~nGvL~I~lPK   92 (92)
T cd06472          81 LENGVLTVTVPK   92 (92)
T ss_pred             EECCEEEEEecC
Confidence            999999999876

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. ScHsp26 is temperature-regulated, it switches from an inactive to a chaperone-active form upon elevation in temperature. It associates into large 24-mers storage forms which upon heat shock disassociate into dimers. These dimers initiate the interaction with non-native substrate proteins and re-assemble into large globular assemblies having one monomer of substrate bound per dimer. This group also contains Arabidopsis thaliana (Ath) Hsp15.7, a peroxisomal matrix protein which can complement the morphological phenotype of S. cerevisiae mutants deficient in Hsps26. AthHsp15.7 is minimally expressed under normal conditions and is strongly induced by heat and oxidative st

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.00015  Score=67.02  Aligned_cols=111  Identities=18%  Similarity=0.138  Sum_probs=96.5

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      .+.+...|..||+.+..-.+..|.+...+.-+|.||+..++|..|..+|++...+.|......+..++.+|+.+.|.+|+
T Consensus        19 ~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   19 RLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHhhhcccC
Q 017264           91 VALEKGASLAPGDSRFTNLIKECEERIAEETGELQ  125 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~~~~~  125 (374)
                      ......    .++..++...-+++..+.-..++.+
T Consensus        99 rV~~~~----~D~~~L~~~~lqLqaAIkYse~Dl~  129 (459)
T KOG4340|consen   99 RVAFLL----LDNPALHSRVLQLQAAIKYSEGDLP  129 (459)
T ss_pred             HHHHHh----cCCHHHHHHHHHHHHHHhcccccCc
Confidence            776654    3456777777777777776654443

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=97.91  E-value=3.3e-05  Score=78.68  Aligned_cols=112  Identities=17%  Similarity=0.232  Sum_probs=87.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH----------------------------HHHHccCHHHHHHHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ----------------------------ASIKLQNFTEAVADA   59 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~----------------------------~~~~l~~~~~Al~~~   59 (374)
                      ...+|...|+..+|.....+-++ .++++.+|+.||.                            ..+..++|.++..++
T Consensus       430 vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hl  508 (777)
T KOG1128|consen  430 VILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHL  508 (777)
T ss_pred             HHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHH
Confidence            44455556665566555555555 3344444444443                            234458999999999


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           60 NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        60 ~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +..++++|.....||++|.+..+++++..|..+|..++.++|++.+..+++..++-++++.
T Consensus       509 e~sl~~nplq~~~wf~~G~~ALqlek~q~av~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k  569 (777)
T KOG1128|consen  509 ERSLEINPLQLGTWFGLGCAALQLEKEQAAVKAFHRCVTLEPDNAEAWNNLSTAYIRLKKK  569 (777)
T ss_pred             HHHhhcCccchhHHHhccHHHHHHhhhHHHHHHHHHHhhcCCCchhhhhhhhHHHHHHhhh
Confidence            9999999999999999999999999999999999999999999999999998888777665

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=97.90  E-value=0.00016  Score=57.94  Aligned_cols=96  Identities=22%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIEL------   65 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l------   65 (374)
                      .....|...+..|-|++|...|.+|+.....-            +..+..++.++..+|+|++++..+.++|..      
T Consensus        11 ~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGE   90 (144)
T PF12968_consen   11 MALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGE   90 (144)
T ss_dssp             HHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccc
Confidence            34567888899999999999999999983222            456777889999999999999999888864      


Q ss_pred             -CCC----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           66 -EPS----MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        66 -~p~----~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                       +.+    ...+.|++|+++..+|+.++|+..|+.+-++
T Consensus        91 L~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~agEM  129 (144)
T PF12968_consen   91 LHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMAGEM  129 (144)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             cccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHHHHH
Confidence             333    3557788999999999999999999987653

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.90  E-value=3.7e-05  Score=80.59  Aligned_cols=113  Identities=15%  Similarity=0.056  Sum_probs=98.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +..+|-.+...+++-.|+..|+.||+.+|.+...+..+|.+|...|+|..|+..|.+|..++|.+.-+.|..+.+...+|
T Consensus       565 W~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~G  644 (1238)
T KOG1127|consen  565 WVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNG  644 (1238)
T ss_pred             hhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhh
Confidence            45688889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +|.+|+..+...+.-......++..++.+.-++
T Consensus       645 kYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~  677 (1238)
T KOG1127|consen  645 KYKEALDALGLIIYAFSLERTGQNGLAESVIRD  677 (1238)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            999999999988776655555555555554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.89  E-value=0.00011  Score=69.14  Aligned_cols=103  Identities=21%  Similarity=0.226  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------
Q 017264            2 ATDLEKKAKEAFID-DYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~-~~y~~Al~~y~~aL~~~p--~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------   68 (374)
                      |..+...|..+... ++++.|+++|.+|+....  ..    ...+.+.|.++.++++|.+|+..|+++....-.      
T Consensus       114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~  193 (282)
T PF14938_consen  114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY  193 (282)
T ss_dssp             HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence            44567888888888 999999999999999822  12    467788999999999999999999999875421      


Q ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           69 -MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                       ....+++.++|++..|++-.|...|++....+|.-.
T Consensus       194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~  230 (282)
T PF14938_consen  194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFA  230 (282)
T ss_dssp             HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTST
T ss_pred             hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCC
Confidence             124567889999999999999999999999988544

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.87  E-value=2.2e-05  Score=48.76  Aligned_cols=32  Identities=28%  Similarity=0.505  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .+|+++|.+++.+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>COG0071 IbpA Molecular chaperone (small heat shock protein) [Posttranslational modification, protein turnover, chaperones]

Probab=97.86  E-value=7.1e-05  Score=63.41  Aligned_cols=79  Identities=16%  Similarity=0.216  Sum_probs=70.3

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---------------CCeeeeccccccccccCceEEEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---------------EEAYHFQPRLFGKIIPAKCRYEV  239 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---------------~~~y~~~~~L~~~I~p~~s~~~v  239 (374)
                      .|+.+++++.+.|++-++|+.+++|.|++.++.|+|+....+               ...|.-.+.|...|+++..+.+.
T Consensus        42 ~vdi~e~~~~~~I~~elPG~~kedI~I~~~~~~l~I~g~~~~~~~~~~~~~~~~e~~~~~f~r~~~Lp~~v~~~~~~A~~  121 (146)
T COG0071          42 PVDIEETDDEYRITAELPGVDKEDIEITVEGNTLTIRGEREEEEEEEEEGYLRRERAYGEFERTFRLPEKVDPEVIKAKY  121 (146)
T ss_pred             cEEEEEcCCEEEEEEEcCCCChHHeEEEEECCEEEEEEEecccccccCCceEEEEEEeeeEEEEEECcccccccceeeEe
Confidence            589999999999999999999999999999999999986543               13577788999999999888999


Q ss_pred             cCcEEEEEEeecCC
Q 017264          240 LSTKVEIRLAKAEP  253 (374)
Q Consensus       240 ~~~kiei~L~K~~~  253 (374)
                      ...-+.|+|.|.++
T Consensus       122 ~nGvL~I~lpk~~~  135 (146)
T COG0071         122 KNGLLTVTLPKAEP  135 (146)
T ss_pred             eCcEEEEEEecccc
Confidence            99999999999765

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.84  E-value=2.2e-05  Score=49.07  Aligned_cols=32  Identities=34%  Similarity=0.483  Sum_probs=19.0

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           59 ANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        59 ~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      |++||+++|+++.+|+++|.+|...|++++|+
T Consensus         2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~   33 (34)
T PF13431_consen    2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAI   33 (34)
T ss_pred             hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence            45556666666666666666666666665554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.82  E-value=0.00013  Score=68.90  Aligned_cols=97  Identities=16%  Similarity=0.144  Sum_probs=80.3

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264           10 KEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e   88 (374)
                      ..+..+.||..|+.+++-.+..+...- ..-.-+|.|++.+|+|++|+..|..+...+..+++.+.++|.|+|.+|.|.+
T Consensus        30 edfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~e  109 (557)
T KOG3785|consen   30 EDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIE  109 (557)
T ss_pred             HHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHH
Confidence            467789999999999999887755443 5666789999999999999999999998877889999999999999999999


Q ss_pred             HHHHHHHHHhcCCCChhHHHHH
Q 017264           89 AKVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      |.....++    |.++-..+.+
T Consensus       110 A~~~~~ka----~k~pL~~RLl  127 (557)
T KOG3785|consen  110 AKSIAEKA----PKTPLCIRLL  127 (557)
T ss_pred             HHHHHhhC----CCChHHHHHH
Confidence            99887765    4444433333

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.82  E-value=4.4e-05  Score=47.19  Aligned_cols=33  Identities=30%  Similarity=0.460  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      ++|+.+|.+++.+|+|++|+.+|+++++++|++
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~   34 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN   34 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence            466777777777777777777777777777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.81  E-value=0.0008  Score=62.44  Aligned_cols=98  Identities=20%  Similarity=0.100  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHH-----------------------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN-----------------------   60 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~-----------------------   60 (374)
                      ..+..+..+...+++.+|...|..++...|.+..+...+|.||...|+.++|...+.                       
T Consensus       136 ~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~q  215 (304)
T COG3118         136 EALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQ  215 (304)
T ss_pred             HHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHH
Confidence            356788899999999999999999999999999999999999999999977643332                       


Q ss_pred             -----------HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           61 -----------RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        61 -----------~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                                 +.+..+|++.++-+.+|..+...|++++|+..|-..++.+-
T Consensus       216 aa~~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~  267 (304)
T COG3118         216 AAATPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDR  267 (304)
T ss_pred             HhcCCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence                       33344788999999999999999999999998887776643

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.80  E-value=0.00099  Score=61.39  Aligned_cols=107  Identities=14%  Similarity=0.089  Sum_probs=86.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHcc------------------CHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQ------------------NFTEAVADANRA   62 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~------------------~~~~Al~~~~~a   62 (374)
                      .++..|..+++.++|+.|+..|+++++..|++   ..+++.+|.|+..++                  ...+|+..|+..
T Consensus        71 a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~l  150 (243)
T PRK10866         71 VQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKL  150 (243)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHH
Confidence            46789999999999999999999999998887   568899998875553                  135788999999


Q ss_pred             HHhCCCCH---HH--------------HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264           63 IELEPSMS---KA--------------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        63 l~l~p~~~---~a--------------~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      +...|+..   ++              -+..|.-|++.|.|..|+.-|+.+++..|+.+.....+
T Consensus       151 i~~yP~S~ya~~A~~rl~~l~~~la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal  215 (243)
T PRK10866        151 VRGYPNSQYTTDATKRLVFLKDRLAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDAL  215 (243)
T ss_pred             HHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHH
Confidence            99999742   22              23457778999999999999999999999877544333

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=97.78  E-value=2.5e-05  Score=48.77  Aligned_cols=34  Identities=35%  Similarity=0.620  Sum_probs=31.7

Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHH
Q 017264           24 LYSQAIEISPNSAELFADRAQASIKLQNFTEAVA   57 (374)
Q Consensus        24 ~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~   57 (374)
                      +|++||+++|+++.+|+++|.+|...|++++|++
T Consensus         1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            4889999999999999999999999999999863

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.75  E-value=0.00021  Score=67.64  Aligned_cols=90  Identities=16%  Similarity=0.207  Sum_probs=51.1

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-HHHHHHHHH
Q 017264           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-ETAKVALEK   95 (374)
Q Consensus        17 ~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-~eA~~~~~~   95 (374)
                      .|.+|.-.|++.....+.++..+..+|.|++.+|+|++|...+..|+..+|++++++.+++.+...+|+. +.+.+++.+
T Consensus       182 ~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~q  261 (290)
T PF04733_consen  182 KYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQ  261 (290)
T ss_dssp             CCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHH
Confidence            3666666666655555555666666666666666666666666666666666666666666666666665 334455555


Q ss_pred             HHhcCCCChhH
Q 017264           96 GASLAPGDSRF  106 (374)
Q Consensus        96 a~~l~p~~~~~  106 (374)
                      ....+|+++-+
T Consensus       262 L~~~~p~h~~~  272 (290)
T PF04733_consen  262 LKQSNPNHPLV  272 (290)
T ss_dssp             CHHHTTTSHHH
T ss_pred             HHHhCCCChHH
Confidence            55566655533

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.73  E-value=0.00035  Score=65.10  Aligned_cols=82  Identities=10%  Similarity=-0.025  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHH-HHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh---HHH
Q 017264           36 AELFADRAQAS-IKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTN  108 (374)
Q Consensus        36 ~~~~~~ra~~~-~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~---~~~  108 (374)
                      ....+..|..+ ++.|+|++|+..|...+...|+.   +.++|.+|.+|+..|+|++|+..|++++...|+++.   +..
T Consensus       142 e~~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~  221 (263)
T PRK10803        142 ANTDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF  221 (263)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence            36677788876 56799999999999999999987   689999999999999999999999999999998653   444


Q ss_pred             HHHHHHHHH
Q 017264          109 LIKECEERI  117 (374)
Q Consensus       109 ~~~~~~~~l  117 (374)
                      .++.+...+
T Consensus       222 klg~~~~~~  230 (263)
T PRK10803        222 KVGVIMQDK  230 (263)
T ss_pred             HHHHHHHHc
Confidence            445555433

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=97.72  E-value=0.00039  Score=70.34  Aligned_cols=111  Identities=17%  Similarity=0.057  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      -++..++..--.++.++|+.++.++|+..|+...+|+.+|+++.++++.+.|...|...++..|..+-.|+.++.+-...
T Consensus       653 v~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~  732 (913)
T KOG0495|consen  653 VWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKD  732 (913)
T ss_pred             hhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHh
Confidence            34566777778899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      |..-.|...|+++.--+|.+..+....-+.+
T Consensus       733 ~~~~rAR~ildrarlkNPk~~~lwle~Ir~E  763 (913)
T KOG0495|consen  733 GQLVRARSILDRARLKNPKNALLWLESIRME  763 (913)
T ss_pred             cchhhHHHHHHHHHhcCCCcchhHHHHHHHH
Confidence            9999999999999999999886543333333

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.00035  Score=66.11  Aligned_cols=114  Identities=18%  Similarity=0.106  Sum_probs=91.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH--------------HHhCC----
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA--------------IELEP----   67 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~a--------------l~l~p----   67 (374)
                      .-.|..+|..|||++|+..|+-+...+..+.++..++|.|++-+|.|.+|.+...+|              .+++.    
T Consensus        61 lWia~C~fhLgdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k~pL~~RLlfhlahklndEk~~  140 (557)
T KOG3785|consen   61 LWIAHCYFHLGDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPKTPLCIRLLFHLAHKLNDEKRI  140 (557)
T ss_pred             HHHHHHHHhhccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCcHHHH
Confidence            346889999999999999999999887778899999999999999999998766543              22221    


Q ss_pred             --------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           68 --------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        68 --------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                              +..+-.+.+|.++|..-.|.+|+..|.+.+.-+|+-..+-..++.|..++.-
T Consensus       141 ~~fh~~LqD~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDY  200 (557)
T KOG3785|consen  141 LTFHSSLQDTLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDY  200 (557)
T ss_pred             HHHHHHHhhhHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcch
Confidence                    1234456788888888899999999999998888887777788888776543

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=97.69  E-value=0.00022  Score=49.20  Aligned_cols=49  Identities=22%  Similarity=0.312  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +.+|.+|++++++|+|.+|+.+++.+++++|+|..+......++.++..
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~i~~~i~k   50 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKELIEDKIQK   50 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHHhc
Confidence            5789999999999999999999999999999999999888888887765

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.69  E-value=7.8e-05  Score=46.22  Aligned_cols=32  Identities=31%  Similarity=0.537  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .+|+++|.+|..+|++++|+.+|++|++++|+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~   33 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence            56777777777777777777777777777775

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=97.69  E-value=0.00051  Score=69.86  Aligned_cols=96  Identities=20%  Similarity=0.119  Sum_probs=88.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      ++-.|..+-..|+|++|++++++||...|..+++|+.+|.+|-..|++.+|...++.|-.++..+.-..-..+..+++.|
T Consensus       197 ~~~lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~  276 (517)
T PF12569_consen  197 LYFLAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLRAG  276 (517)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHHCC
Confidence            45678888899999999999999999999999999999999999999999999999999999998877788899999999


Q ss_pred             CHHHHHHHHHHHHhcC
Q 017264           85 EYETAKVALEKGASLA  100 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~  100 (374)
                      +.++|...+....+-+
T Consensus       277 ~~e~A~~~~~~Ftr~~  292 (517)
T PF12569_consen  277 RIEEAEKTASLFTRED  292 (517)
T ss_pred             CHHHHHHHHHhhcCCC
Confidence            9999999998766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=97.67  E-value=9.7e-05  Score=48.91  Aligned_cols=43  Identities=21%  Similarity=0.271  Sum_probs=39.0

Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      +.+++.+|.+|..+|++++|+.+|+++++.+|++..++..++.
T Consensus         1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    1 PAAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            3679999999999999999999999999999999988776654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=97.67  E-value=0.00042  Score=70.05  Aligned_cols=91  Identities=21%  Similarity=0.277  Sum_probs=49.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      .|..+-..++|++||..|..||..+|+|..++..++....++++|+..+..-.+.+++.|.....|+.+|++++-+|+|.
T Consensus        81 ~gl~~R~dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~  160 (700)
T KOG1156|consen   81 LGLLQRSDKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYK  160 (700)
T ss_pred             HHHHHhhhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             HHHHHHHHHHh
Q 017264           88 TAKVALEKGAS   98 (374)
Q Consensus        88 eA~~~~~~a~~   98 (374)
                      .|...++...+
T Consensus       161 ~A~~il~ef~~  171 (700)
T KOG1156|consen  161 MALEILEEFEK  171 (700)
T ss_pred             HHHHHHHHHHH
Confidence            55555444443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.60  E-value=0.00031  Score=66.14  Aligned_cols=95  Identities=21%  Similarity=0.232  Sum_probs=72.5

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCC--C----CHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKL-QNFTEAVADANRAIELEP--S----MSKAY   73 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p--~~----~~~~~~ra~~~~~l-~~~~~Al~~~~~al~l~p--~----~~~a~   73 (374)
                      ..+-.+++..++.+|+.+|.+|+.+.-  ..    +.++..+|.+|... +++++|+..|.+|+.+..  +    ...++
T Consensus        79 ~~Aa~~~k~~~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~  158 (282)
T PF14938_consen   79 EEAANCYKKGDPDEAIECYEKAIEIYREAGRFSQAAKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECL  158 (282)
T ss_dssp             HHHHHHHHHTTHHHHHHHHHHHHHHHHHCT-HHHHHHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHHHHHHhhCHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHH
Confidence            334444555699999999999999721  11    56888899999888 999999999999998742  1    24577


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           74 WRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ..+|.++..+|+|++|+..|++.....-
T Consensus       159 ~~~A~l~~~l~~y~~A~~~~e~~~~~~l  186 (282)
T PF14938_consen  159 LKAADLYARLGRYEEAIEIYEEVAKKCL  186 (282)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHhh
Confidence            8899999999999999999999887543

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=97.60  E-value=0.00011  Score=69.11  Aligned_cols=81  Identities=17%  Similarity=0.174  Sum_probs=67.3

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      +-.+|.-|+++|.|++|+.+|.+++.+.|-++..+.++|.+|+++++|..|...|..++.|+-....+......+...|+
T Consensus       100 iKE~GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg  179 (536)
T KOG4648|consen  100 IKERGNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG  179 (536)
T ss_pred             HHHhhhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence            46689999999999999999999999999999999999999999999999999999999887554444443344444443


Q ss_pred             h
Q 017264          119 E  119 (374)
Q Consensus       119 ~  119 (374)
                      .
T Consensus       180 ~  180 (536)
T KOG4648|consen  180 N  180 (536)
T ss_pred             h
Confidence            3

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=97.57  E-value=0.0002  Score=44.16  Aligned_cols=32  Identities=34%  Similarity=0.487  Sum_probs=20.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .+++.+|.+|..+|++++|+.+|++++.++|+
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            45666666666666666666666666666665

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=97.57  E-value=0.00066  Score=64.22  Aligned_cols=113  Identities=16%  Similarity=0.099  Sum_probs=83.4

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      -....++..++++.|.+.+..+-+.+.+.......-|.+.+..|  ++.+|...|+......+..+..+..+|.|+..+|
T Consensus       136 l~Vqi~L~~~R~dlA~k~l~~~~~~~eD~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~  215 (290)
T PF04733_consen  136 LAVQILLKMNRPDLAEKELKNMQQIDEDSILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLG  215 (290)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhC
Confidence            35567888999999999998877776664433333333444444  6899999999987777788889999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|++|...+..++..+|.++.....+.-|...++.
T Consensus       216 ~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk  250 (290)
T PF04733_consen  216 HYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGK  250 (290)
T ss_dssp             -HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-
T ss_pred             CHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCC
Confidence            99999999999999999999877777666555443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>cd06464 ACD_sHsps-like Alpha-crystallin domain (ACD) of alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=97.55  E-value=0.00037  Score=53.07  Aligned_cols=74  Identities=19%  Similarity=0.284  Sum_probs=64.1

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCceEEEEcCc
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVLST  242 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~~~  242 (374)
                      +++++++.+.|.|.++|+.++++.|.+.++.|.|+.....              ...|.-.+.|...|+++..+..+...
T Consensus         1 ~i~e~~~~~~i~~~lpg~~~~~i~V~v~~~~l~I~g~~~~~~~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~a~~~~G   80 (88)
T cd06464           1 DVYETDDAYVVEADLPGFKKEDIKVEVEDGVLTISGEREEEEEEEENYLRRERSYGSFSRSFRLPEDVDPDKIKASLENG   80 (88)
T ss_pred             CcEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCcEEEEEEeCcEEEEEEECCCCcCHHHcEEEEeCC
Confidence            4788999999999999999999999999999999864321              34588888999999999999999999


Q ss_pred             EEEEEEee
Q 017264          243 KVEIRLAK  250 (374)
Q Consensus       243 kiei~L~K  250 (374)
                      .++|++.|
T Consensus        81 ~L~I~~pk   88 (88)
T cd06464          81 VLTITLPK   88 (88)
T ss_pred             EEEEEEcC
Confidence            99998865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.54  E-value=0.0009  Score=67.06  Aligned_cols=100  Identities=18%  Similarity=0.200  Sum_probs=68.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHH---------------------------------HHHHHHHHc
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFA---------------------------------DRAQASIKL   49 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~---------------------------------~ra~~~~~l   49 (374)
                      .+++..-+.+..+++|++|+...++.|...|++..++.                                 .+|.|++++
T Consensus        13 ~~l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrl   92 (652)
T KOG2376|consen   13 EALLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRL   92 (652)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHc
Confidence            35666777777888888888888888888777744444                                 445555555


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        50 ~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      ++.++|+..+.   .+++.....+..+|+.+|++|+|++|+..|+...+.+.++.+
T Consensus        93 nk~Dealk~~~---~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d  145 (652)
T KOG2376|consen   93 NKLDEALKTLK---GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQD  145 (652)
T ss_pred             ccHHHHHHHHh---cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHH
Confidence            55555555554   344455567777888888888888888888887776665544

>cd06471 ACD_LpsHSP_like Group of bacterial proteins containing an alpha crystallin domain (ACD) similar to Lactobacillus plantarum (Lp) small heat shock proteins (sHsp) HSP 18

Probab=97.54  E-value=0.00036  Score=54.25  Aligned_cols=75  Identities=13%  Similarity=0.216  Sum_probs=61.0

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------C---------CeeeeccccccccccCceEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------E---------EAYHFQPRLFGKIIPAKCRY  237 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~---------~~y~~~~~L~~~I~p~~s~~  237 (374)
                      +.+++++++.+.|.+.++|+.++++.|++.++.|.|+.....        +         ..|.-.+.|. .|+++..+.
T Consensus         2 ~~di~e~~~~~~i~~~lPGv~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~~~e~~~g~f~r~~~lp-~v~~~~i~A   80 (93)
T cd06471           2 KTDIKETDDEYIVEADLPGFKKEDIKLDYKDGYLTISAKRDESKDEKDKKGNYIRRERYYGSFSRSFYLP-NVDEEEIKA   80 (93)
T ss_pred             ceeEEEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEccccccccccCCEEEEeeeccEEEEEEECC-CCCHHHCEE
Confidence            579999999999999999999999999999999999764321        0         1244445665 798888899


Q ss_pred             EEcCcEEEEEEee
Q 017264          238 EVLSTKVEIRLAK  250 (374)
Q Consensus       238 ~v~~~kiei~L~K  250 (374)
                      +.....+.|+|.|
T Consensus        81 ~~~dGvL~I~lPK   93 (93)
T cd06471          81 KYENGVLKITLPK   93 (93)
T ss_pred             EEECCEEEEEEcC
Confidence            9988899999876

5, HSP 18.55 and HSP 19.3. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Transcription of the genes encoding Lp HSP 18.5, 18.55 and 19.3 is regulated by a variety of stresses including heat, cold and ethanol. Early growing L. plantarum cells contain elevated levels of these mRNAs which rapidly fall of as the cells enter stationary phase. Also belonging to this group is Bifidobacterium breve (Bb) HSP20 and Oenococcus oenis (syn. Leuconostoc oenos) (Oo) HSP18. Transcription of the gene encoding BbHSP20 is strongly induced following heat or osmotic shock, and that of the gene encoding OoHSP18 following heat, ethanol or acid shock. OoHSP18 is peripherally associated with the cytoplasmic me

>PF00011 HSP20: Hsp20/alpha crystallin family This prints entry is a subset of the Pfam entry

Probab=97.51  E-value=0.00057  Score=53.95  Aligned_cols=77  Identities=16%  Similarity=0.251  Sum_probs=61.3

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC---------CeeeeccccccccccCceEEEEcCcE
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE---------EAYHFQPRLFGKIIPAKCRYEVLSTK  243 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~---------~~y~~~~~L~~~I~p~~s~~~v~~~k  243 (374)
                      ||+++++.+.|.+-++|+.++++.|.+..+.|.|+....    ++         ..|.-.+.|...|+++..+.++....
T Consensus         1 di~e~~~~~~i~~~lpG~~~edi~I~~~~~~L~I~g~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~a~~~~Gv   80 (102)
T PF00011_consen    1 DIKEDEDEYIIKVDLPGFDKEDIKIKVDDNKLVISGKRKEEEEDDRYYRSERRYGSFERSIRLPEDVDPDKIKASYENGV   80 (102)
T ss_dssp             EEEESSSEEEEEEE-TTS-GGGEEEEEETTEEEEEEEEEGEECTTCEEEE-S-SEEEEEEEE-STTB-GGG-EEEETTSE
T ss_pred             CeEECCCEEEEEEECCCCChHHEEEEEecCccceeceeeeeeeeeeeeecccccceEEEEEcCCCcCCcceEEEEecCCE
Confidence            689999999999999999999999999999998886432    11         24666788999999999999999999


Q ss_pred             EEEEEeecCC
Q 017264          244 VEIRLAKAEP  253 (374)
Q Consensus       244 iei~L~K~~~  253 (374)
                      +.|++.|...
T Consensus        81 L~I~~pk~~~   90 (102)
T PF00011_consen   81 LTITIPKKEE   90 (102)
T ss_dssp             EEEEEEBSSS
T ss_pred             EEEEEEcccc
Confidence            9999999754

; InterPro: IPR002068 Prokaryotic and eukaryotic organisms respond to heat shock or other environmental stress by inducing the synthesis of proteins collectively known as heat-shock proteins (hsp) []. Amongst them is a family of proteins with an average molecular weight of 20 Kd, known as the hsp20 proteins []. These seem to act as chaperones that can protect other proteins against heat-induced denaturation and aggregation. Hsp20 proteins seem to form large heterooligomeric aggregates. Structurally, this family is characterised by the presence of a conserved C-terminal domain of about 100 residues.; PDB: 2BOL_B 3N3E_B 2H50_P 2H53_F 2BYU_L 1GME_D 3VQM_J 3VQK_E 3VQL_A 3AAC_A ....

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.49  E-value=0.0013  Score=65.95  Aligned_cols=40  Identities=23%  Similarity=0.262  Sum_probs=25.1

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      |-+|.|+|++++.++|+.+++   .+++.+..+....+++..+
T Consensus        83 fEKAYc~Yrlnk~Dealk~~~---~~~~~~~~ll~L~AQvlYr  122 (652)
T KOG2376|consen   83 FEKAYCEYRLNKLDEALKTLK---GLDRLDDKLLELRAQVLYR  122 (652)
T ss_pred             HHHHHHHHHcccHHHHHHHHh---cccccchHHHHHHHHHHHH
Confidence            677888888888888888888   2344444344444443333

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.49  E-value=0.00058  Score=69.66  Aligned_cols=89  Identities=16%  Similarity=0.105  Sum_probs=80.7

Q ss_pred             cCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHH
Q 017264           16 DYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL   93 (374)
Q Consensus        16 ~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~   93 (374)
                      .+...|.....+++.+  ++.++.+|..+|..+...|++++|...+++|+.++| +..+|+.+|.++...|++++|+..|
T Consensus       398 ~~l~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~  476 (517)
T PRK10153        398 KQLAALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAY  476 (517)
T ss_pred             HHHHHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            4567778888887774  788888999999999999999999999999999999 4789999999999999999999999


Q ss_pred             HHHHhcCCCChh
Q 017264           94 EKGASLAPGDSR  105 (374)
Q Consensus        94 ~~a~~l~p~~~~  105 (374)
                      +++++++|.++.
T Consensus       477 ~~A~~L~P~~pt  488 (517)
T PRK10153        477 STAFNLRPGENT  488 (517)
T ss_pred             HHHHhcCCCCch
Confidence            999999999885

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=97.47  E-value=0.0024  Score=52.46  Aligned_cols=86  Identities=16%  Similarity=0.229  Sum_probs=73.5

Q ss_pred             CHHHHHHHHHHHHHcc---CHHHHHHHHHHHHH-hCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           35 SAELFADRAQASIKLQ---NFTEAVADANRAIE-LEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~---~~~~Al~~~~~al~-l~p-~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      .....+++|.|+.+..   +..+.+..++..+. -+| ...++.|.+|+.++++++|+.|+.++..+++.+|+|.++...
T Consensus        31 s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   31 SKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             hHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            3567889999998864   56678888888886 444 356789999999999999999999999999999999999998


Q ss_pred             HHHHHHHHHhh
Q 017264          110 IKECEERIAEE  120 (374)
Q Consensus       110 ~~~~~~~l~~~  120 (374)
                      ...++.++...
T Consensus       111 k~~ied~itke  121 (149)
T KOG3364|consen  111 KETIEDKITKE  121 (149)
T ss_pred             HHHHHHHHhhc
Confidence            88888887765

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.44  E-value=8.5e-05  Score=71.38  Aligned_cols=97  Identities=13%  Similarity=0.173  Sum_probs=72.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----CC--CH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE----PS--MS   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~----p~--~~   70 (374)
                      +.+-+.||.||-.|+|+.||.+-..-|.+....      -.++.++|.||.-+|+|+.|+++|.+++.+.    ..  -+
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            455678888999999999998877766663222      3578888999999999999999888776554    22  24


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ...|.+|..|+-+.+|..|+.++++-+.+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaI  304 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAI  304 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            56778888888888888888888775443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.40  E-value=0.0006  Score=63.20  Aligned_cols=63  Identities=16%  Similarity=0.156  Sum_probs=44.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +.+.+.|..+|+.|+|++|++-|+.|++....++.+-+++|.|+++.++|..|+......+..
T Consensus       145 d~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy~~~qyasALk~iSEIieR  207 (459)
T KOG4340|consen  145 DGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHYSSRQYASALKHISEIIER  207 (459)
T ss_pred             chhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHHhhhhHHHHHHHHHHHHHh
Confidence            345566777777777777777777777777777777777777777777777777766655543

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.40  E-value=0.0013  Score=54.87  Aligned_cols=70  Identities=23%  Similarity=0.232  Sum_probs=64.7

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +..++..|...++.|+|.+|+..++.+....|.   -..+.+.+|.+|+..++|.+|+..+++.++|+|.++.
T Consensus        10 ~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~   82 (142)
T PF13512_consen   10 PQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN   82 (142)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC
Confidence            567888999999999999999999999998874   4679999999999999999999999999999999885

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.39  E-value=0.0004  Score=68.16  Aligned_cols=112  Identities=13%  Similarity=0.072  Sum_probs=90.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHH-HHhCCC--------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQA-IEISPN--------SAELFADRAQASIKLQNFTEAVADANRAIEL---------   65 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~a-L~~~p~--------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l---------   65 (374)
                      .++-+++..|..|+|..|.+++... +...+.        ...++.++|.++++++.|..+.-+|.+|++.         
T Consensus       242 ~l~LKsq~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~  321 (696)
T KOG2471|consen  242 ALLLKSQLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGL  321 (696)
T ss_pred             HHHHHHHHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccC
Confidence            5677889999999999999988552 223333        2356688999999999999999999999961         


Q ss_pred             CC---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           66 EP---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        66 ~p---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .|         ..-+.+|++|+.|...|+.-.|.+||.++......++.++..++.|--
T Consensus       322 ~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCi  380 (696)
T KOG2471|consen  322 KPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCI  380 (696)
T ss_pred             CCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            11         245789999999999999999999999999999999987777766543

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=97.33  E-value=0.0015  Score=63.21  Aligned_cols=93  Identities=18%  Similarity=0.272  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCC--------C----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN--------S----------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--------~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      ....|...|++++|..|+-.|..||++...        .          ..+-..+..||+++++.+.|+....+.|.++
T Consensus       179 AL~das~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~ln  258 (569)
T PF15015_consen  179 ALKDASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLN  258 (569)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcC
Confidence            456677888888888888888888887221        1          2345678999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      |....-|++.|.++..+.+|.+|...+-.+.
T Consensus       259 P~~frnHLrqAavfR~LeRy~eAarSamia~  289 (569)
T PF15015_consen  259 PSYFRNHLRQAAVFRRLERYSEAARSAMIAD  289 (569)
T ss_pred             cchhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999987766543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=97.30  E-value=0.0083  Score=57.70  Aligned_cols=119  Identities=14%  Similarity=0.105  Sum_probs=100.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~   80 (374)
                      ++.....|..-+..|+|..|..+..++-+..+.-...|..-|.+-.++|+++.|-++..++-++.++ ...+.+.++.++
T Consensus        84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll  163 (400)
T COG3071          84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL  163 (400)
T ss_pred             HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence            3456778888999999999999999988877777777887888889999999999999999999543 456788899999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ...|+|..|......+++..|.++.+.....++.-+++.-
T Consensus       164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~  203 (400)
T COG3071         164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAW  203 (400)
T ss_pred             HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccH
Confidence            9999999999999999999999999888888777665543

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=97.29  E-value=0.00037  Score=65.91  Aligned_cols=117  Identities=20%  Similarity=0.256  Sum_probs=100.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---CC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP---NS----------------AELFADRAQASIKLQNFTEAVADANRAIE   64 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p---~~----------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~   64 (374)
                      ...+.|+..++.++|..|+.-|.++++...   ..                ...+.+.+.|-++++.+..|+.....+++
T Consensus       224 ~~k~~~~~~~kk~~~~~a~~k~~k~~r~~~~~s~~~~~e~~~~~~~~~~~r~~~~~n~~~~~lk~~~~~~a~~~~~~~~~  303 (372)
T KOG0546|consen  224 KKKNIGNKEFKKQRYREALAKYRKALRYLSEQSRDREKEQENRIPPLRELRFSIRRNLAAVGLKVKGRGGARFRTNEALR  303 (372)
T ss_pred             hhhccchhhhhhccHhHHHHHHHHHhhhhcccccccccccccccccccccccccccchHHhcccccCCCcceeccccccc
Confidence            345678899999999999999999887622   10                23566678899999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        65 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .++....+||+++..+..+.++++|+..+..+....|++..+...+..+..++...
T Consensus       304 ~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~~~  359 (372)
T KOG0546|consen  304 DERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKKQY  359 (372)
T ss_pred             cChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHHHH
Confidence            99999999999999999999999999999999999999999888887777766554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.28  E-value=0.00083  Score=64.77  Aligned_cols=118  Identities=14%  Similarity=0.146  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh----C--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI----S--PNSAELFADRAQASIKLQNFTEAVADANRAIELEP------SMS   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~----~--p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~   70 (374)
                      ++.-+.||.+.-.|+|+.|+++|..++.+    .  ...+...+.+|..|.-++.++.||.+..+-+.+..      ...
T Consensus       236 RA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~  315 (639)
T KOG1130|consen  236 RAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGEL  315 (639)
T ss_pred             HhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhH
Confidence            34567899999999999999999987766    2  22256778899999999999999999988776653      356


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-----CC-ChhHHHHHHHHHHHHHhh
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLA-----PG-DSRFTNLIKECEERIAEE  120 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~-----p~-~~~~~~~~~~~~~~l~~~  120 (374)
                      .+++.+|.++..+|..+.|+.+.++.+++.     +. .......+..+...++..
T Consensus       316 RacwSLgna~~alg~h~kAl~fae~hl~~s~ev~D~sgelTar~Nlsdl~~~lG~~  371 (639)
T KOG1130|consen  316 RACWSLGNAFNALGEHRKALYFAELHLRSSLEVNDTSGELTARDNLSDLILELGQE  371 (639)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhCCcchhhhhhhhhHHHHHHhCCC
Confidence            789999999999999999999988877653     21 223444444454444443

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.28  E-value=0.0057  Score=64.13  Aligned_cols=107  Identities=12%  Similarity=0.024  Sum_probs=90.5

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      --..+...++|..|+....+.++..|+...+....|..+.++|++++|...++..-.+.+++-..+-.+-.+|..+++++
T Consensus        15 pi~d~ld~~qfkkal~~~~kllkk~Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d   94 (932)
T KOG2053|consen   15 PIYDLLDSSQFKKALAKLGKLLKKHPNALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLD   94 (932)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhh
Confidence            34466788999999999999999999999999999999999999999997776666677777778888899999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           88 TAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      +|..+|+++..-+|. -+....+-.+..
T Consensus        95 ~~~~~Ye~~~~~~P~-eell~~lFmayv  121 (932)
T KOG2053|consen   95 EAVHLYERANQKYPS-EELLYHLFMAYV  121 (932)
T ss_pred             HHHHHHHHHHhhCCc-HHHHHHHHHHHH
Confidence            999999999999998 554444444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.27  E-value=0.01  Score=50.79  Aligned_cols=98  Identities=27%  Similarity=0.277  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ-ASIKLQNFTEAVADANRAIELEP---SMSKAYWRKATAC   80 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~-~~~~l~~~~~Al~~~~~al~l~p---~~~~a~~~lg~~~   80 (374)
                      +...|......++|..|+..+..++...+.+.......+. ++...+++..|+..+.+++...+   .....++.++..+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (291)
T COG0457          98 LLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL  177 (291)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHH
Confidence            3445555555555666666666666555554333333444 55566666666666666655444   2344444455555


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCC
Q 017264           81 MKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ...+++..|+..+.+++...+.
T Consensus       178 ~~~~~~~~a~~~~~~~~~~~~~  199 (291)
T COG0457         178 EALGRYEEALELLEKALKLNPD  199 (291)
T ss_pred             HHhcCHHHHHHHHHHHHhhCcc
Confidence            5566666666666666655555

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=97.21  E-value=0.00094  Score=59.34  Aligned_cols=72  Identities=18%  Similarity=0.171  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +.+++.||..|-.+|-..-|.-||.+++.+.|..+.++-.+|+.+...|+|+.|.+.|...++++|...-..
T Consensus        65 A~l~fERGvlYDSlGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~  136 (297)
T COG4785          65 AQLLFERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAH  136 (297)
T ss_pred             HHHHHHhcchhhhhhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHH
Confidence            678899999999999999999999999999999999999999999999999999999999999999876433

>PRK10941 hypothetical protein; Provisional

Probab=97.21  E-value=0.0039  Score=58.16  Aligned_cols=77  Identities=12%  Similarity=0.099  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..+.++=.+|.+.++++.|+.+.+.++.++|+++.-+.-+|.+|+++|.+..|...|+..++..|+++.......++
T Consensus       182 Rml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql  258 (269)
T PRK10941        182 KLLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQI  258 (269)
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHH
Confidence            45666778889999999999999999999999999888899999999999999999999999999998755444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=97.20  E-value=0.0029  Score=54.74  Aligned_cols=69  Identities=19%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             HHHHHHHHHHHhc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFID----------DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADANR   61 (374)
Q Consensus         3 ~~l~~~g~~~~~~----------~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-----------~~~~Al~~~~~   61 (374)
                      +.|.+-|.++...          .-+++|+.-|.+||.++|+...++.++|.+|..++           .|++|..+|.+
T Consensus        26 dnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~Fqk  105 (186)
T PF06552_consen   26 DNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQK  105 (186)
T ss_dssp             HHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHH
Confidence            4455555555443          34688999999999999999999999999998863           37788889999


Q ss_pred             HHHhCCCCHH
Q 017264           62 AIELEPSMSK   71 (374)
Q Consensus        62 al~l~p~~~~   71 (374)
                      |+.++|++..
T Consensus       106 Av~~~P~ne~  115 (186)
T PF06552_consen  106 AVDEDPNNEL  115 (186)
T ss_dssp             HHHH-TT-HH
T ss_pred             HHhcCCCcHH
Confidence            9999998853

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=97.15  E-value=0.0007  Score=41.73  Aligned_cols=32  Identities=31%  Similarity=0.476  Sum_probs=20.7

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ++|+.+|.+|..+|++++|+.+|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45666666666666666666666666666653

...

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.12  E-value=0.01  Score=51.94  Aligned_cols=98  Identities=13%  Similarity=0.040  Sum_probs=77.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ....|..++..+++++|+..+..+|....+.   ..+-.++|.+.+.++.+++|+..+.....-+ -.+.....+|.++.
T Consensus        92 aL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~-w~~~~~elrGDill  170 (207)
T COG2976          92 ALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEES-WAAIVAELRGDILL  170 (207)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcccccc-HHHHHHHHhhhHHH
Confidence            4678899999999999999999999764433   3566778999999999999998664432211 12234567899999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCC
Q 017264           82 KLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      ..|+-.+|+..|+++++.+++.
T Consensus       171 ~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         171 AKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             HcCchHHHHHHHHHHHHccCCh
Confidence            9999999999999999988543

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=97.11  E-value=0.0051  Score=48.97  Aligned_cols=92  Identities=22%  Similarity=0.239  Sum_probs=76.9

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHcc-----------CHHHHHHHHHHHHHhCCCCHHHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQ-----------NFTEAVADANRAIELEPSMSKAY   73 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l~-----------~~~~Al~~~~~al~l~p~~~~a~   73 (374)
                      +|..++.+||+-+|+++....+...+++.   .++..-|.++.++.           -+-.+++.|.++..+.|..+..+
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57889999999999999999999977765   55666677776652           24568999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           74 WRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      |.+|.-+-....|++++.-.++++..
T Consensus        82 ~~la~~l~s~~~Ykk~v~kak~~Lsv  107 (111)
T PF04781_consen   82 FELASQLGSVKYYKKAVKKAKRGLSV  107 (111)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHhcc
Confidence            99999888888899998888888764

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.11  E-value=0.013  Score=50.23  Aligned_cols=92  Identities=27%  Similarity=0.366  Sum_probs=72.0

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCH
Q 017264           11 EAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMKLEEY   86 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p---~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~~~lg~~   86 (374)
                      .++..++++.|+..|.+++..++   .....+..++..+...+++..|+..+.+++...+. ....+..++.++...+.+
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            67788888888888888877666   34556666666677778888888888888888887 677888888888888888


Q ss_pred             HHHHHHHHHHHhcCCC
Q 017264           87 ETAKVALEKGASLAPG  102 (374)
Q Consensus        87 ~eA~~~~~~a~~l~p~  102 (374)
                      ..|...+..++...|.
T Consensus       219 ~~a~~~~~~~~~~~~~  234 (291)
T COG0457         219 EEALEYYEKALELDPD  234 (291)
T ss_pred             HHHHHHHHHHHhhCcc
Confidence            8888888888887776

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.0048  Score=62.54  Aligned_cols=95  Identities=18%  Similarity=0.152  Sum_probs=85.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +++.|..+|+.++|..+++.|...++..|++      +....+++.||+.+.+.+.|++.+..|-+.+|.++-..+....
T Consensus       357 LWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~  436 (872)
T KOG4814|consen  357 LWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQ  436 (872)
T ss_pred             HHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHH
Confidence            6789999999999999999999999987766      4567788999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhc
Q 017264           79 ACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      +....+.-.+|+.++......
T Consensus       437 ~~~~E~~Se~AL~~~~~~~s~  457 (872)
T KOG4814|consen  437 SFLAEDKSEEALTCLQKIKSS  457 (872)
T ss_pred             HHHHhcchHHHHHHHHHHHhh
Confidence            999999999999998876543

>PRK10941 hypothetical protein; Provisional

Probab=97.08  E-value=0.0056  Score=57.11  Aligned_cols=77  Identities=17%  Similarity=0.125  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      -+.+.-..+.+.++|+.|+...+..|.+.|+++.-+..||.+|.++|.+..|+.|++..++..|+.+.+-.-+.++.
T Consensus       183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ik~ql~  259 (269)
T PRK10941        183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEMIRAQIH  259 (269)
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence            34566778999999999999999999999999999999999999999999999999999999999988776665543

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=97.08  E-value=0.0047  Score=55.94  Aligned_cols=71  Identities=23%  Similarity=0.301  Sum_probs=65.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      +.+-...++..|+|-+++++.+..|..+|.|..+|+.||.++...=+.++|.+|+.++|+++|....+.-+
T Consensus       233 llNy~QC~L~~~e~yevleh~seiL~~~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVsr  303 (329)
T KOG0545|consen  233 LLNYCQCLLKKEEYYEVLEHCSEILRHHPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVSR  303 (329)
T ss_pred             HHhHHHHHhhHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999987665444

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.03  E-value=0.0051  Score=56.61  Aligned_cols=82  Identities=16%  Similarity=0.162  Sum_probs=71.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh---HHHHHHH
Q 017264           39 FADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR---FTNLIKE  112 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~---~~~~~~~  112 (374)
                      +++.|.-+++.|+|..|.+.|..-+...|+   .++++|=||.++|.+|+|.+|...|..+.+-.|+.+.   ...-++.
T Consensus       144 ~Y~~A~~~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         144 LYNAALDLYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            788999999999999999999999999986   4789999999999999999999999999999888764   4555566


Q ss_pred             HHHHHHhh
Q 017264          113 CEERIAEE  120 (374)
Q Consensus       113 ~~~~l~~~  120 (374)
                      |..++++.
T Consensus       224 ~~~~l~~~  231 (262)
T COG1729         224 SLGRLGNT  231 (262)
T ss_pred             HHHHhcCH
Confidence            66665554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=97.01  E-value=0.059  Score=45.98  Aligned_cols=109  Identities=15%  Similarity=-0.008  Sum_probs=87.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .|+.........++.+++..++...--+.|+.+++-..-|..++..|++.+|+..++.+....|..+-+--.++.|++.+
T Consensus        12 gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~   91 (160)
T PF09613_consen   12 GLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYAL   91 (160)
T ss_pred             HHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHc
Confidence            56778888999999999999998888889999999999999999999999999999999999999998888999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ++..==. +-..+++..+ ++.....++.+.
T Consensus        92 ~D~~Wr~-~A~evle~~~-d~~a~~Lv~~Ll  120 (160)
T PF09613_consen   92 GDPSWRR-YADEVLESGA-DPDARALVRALL  120 (160)
T ss_pred             CChHHHH-HHHHHHhcCC-ChHHHHHHHHHH
Confidence            9864211 1222333333 455555444443

>cd06479 ACD_HspB7_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB7, also known as cardiovascular small heat shock protein (cvHsp), and similar proteins

Probab=96.92  E-value=0.0051  Score=46.51  Aligned_cols=72  Identities=8%  Similarity=0.122  Sum_probs=59.8

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC--CC---CeeeeccccccccccCceEEEE-cCcEEEEEEee
Q 017264          179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP--GE---EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  250 (374)
Q Consensus       179 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~--~~---~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  250 (374)
                      +.+++.+.|.+.++|+.++++.|++..+.|+|+....  .+   ..|.-.+.|...|+++..+-.+ ....+.|++.+
T Consensus         4 ~e~~~~~~v~~dlpG~~pedi~V~v~~~~L~I~ger~~~~~~~~g~F~R~~~LP~~vd~e~v~A~l~~~GvL~I~~~~   81 (81)
T cd06479           4 KTLGDTYQFAVDVSDFSPEDIIVTTSNNQIEVHAEKLASDGTVMNTFTHKCQLPEDVDPTSVSSSLGEDGTLTIKARR   81 (81)
T ss_pred             cCcCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEeccCCCEEEEEEEEEECCCCcCHHHeEEEecCCCEEEEEecC
Confidence            5688999999999999999999999999999987431  22   2466678899999999999887 67789888864

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB7 is a 25-kDa protein, preferentially expressed in heart and skeletal muscle. It binds the cytoskeleton protein alpha-filamin (also known as actin-binding protein 280). The expression of HspB7 is increased during rat muscle aging. Its expression is also modulated in obesity implicating this protein in this and related metabolic disorders. As the human gene encoding HspB7 is mapped to chromosome 1p36.23-p34.3 it is a positional candidate for several dystrophies and myopathies.

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.89  E-value=0.016  Score=54.51  Aligned_cols=100  Identities=14%  Similarity=0.096  Sum_probs=82.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      +....+.+.+.+..+.|...|.+|++..+.+..+|...|...+. .++...|...|+.++...|.+...|+.+...+..+
T Consensus         4 ~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~   83 (280)
T PF05843_consen    4 WIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKL   83 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            45566677777779999999999996666677888888888666 46666699999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 017264           84 EEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ++.+.|...|++++..-+.+.
T Consensus        84 ~d~~~aR~lfer~i~~l~~~~  104 (280)
T PF05843_consen   84 NDINNARALFERAISSLPKEK  104 (280)
T ss_dssp             T-HHHHHHHHHHHCCTSSCHH
T ss_pred             CcHHHHHHHHHHHHHhcCchh
Confidence            999999999999998877766

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG4379 consensus Uncharacterized conserved protein (tumor antigen CML66 in humans) [Function unknown]

Probab=96.88  E-value=0.0017  Score=62.85  Aligned_cols=85  Identities=15%  Similarity=0.241  Sum_probs=70.4

Q ss_pred             CccccccCCeEEEEEEeCC-CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC-cEEEEEEeecC
Q 017264          175 RHEFYQKPEEVVVTVFAKG-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAKAE  252 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~-~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K~~  252 (374)
                      -|-|.|+++.|.|++.++. ...+++.|.+-.+.|-+.+.    .+-.|+..||..|.-+.|.+.|.- .++|+.|.|++
T Consensus       291 ~y~w~qt~d~~~~~~~~p~~~~~~~i~Iq~~~~~v~v~~~----dh~~~~g~lyasv~he~s~~ii~ean~Le~sl~K~d  366 (596)
T KOG4379|consen  291 SYSWSQTDDNVLIRFNVPSTASAKEINIQGSKTTVVVKHL----DHVIFDGELYASVGHELSAFIIAEANGLELSLTKAD  366 (596)
T ss_pred             cceeeeccCcceEEEecccccccceEEEEecCceEEEEee----eeEEeccchhhhccccchhhhhhhhccceEEEeecc
Confidence            4899999999999998865 45688888888887766653    245678899999999999999977 69999999995


Q ss_pred             -CCCCCccccCC
Q 017264          253 -PIQWSSLEFSK  263 (374)
Q Consensus       253 -~~~W~~L~~~~  263 (374)
                       ...|++|-..+
T Consensus       367 e~~twprL~~~d  378 (596)
T KOG4379|consen  367 EIQTWPRLFAQD  378 (596)
T ss_pred             cccccchheeec
Confidence             48999998554

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=96.87  E-value=0.002  Score=39.63  Aligned_cols=32  Identities=25%  Similarity=0.435  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .+|+.+|.+|..+|++++|+..|+++++++|+
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~   33 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELNPD   33 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            45667777777777777777777777777663

...

>cd06475 ACD_HspB1_like Alpha crystallin domain (ACD) found in mammalian small (s)heat shock protein (Hsp)-27 (also denoted HspB1 in human) and similar proteins

Probab=96.87  E-value=0.0052  Score=47.06  Aligned_cols=72  Identities=8%  Similarity=0.101  Sum_probs=59.8

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C----CeeeeccccccccccCceEEEEc-CcEEEEE
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  247 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~  247 (374)
                      +++.+++.+.|.+.++|+.++++.|++.++.|.|+.....    +    ..|.-.+.|...|++++.+-... ...+.|+
T Consensus         4 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~f~R~f~LP~~vd~~~v~A~~~~dGvL~I~   83 (86)
T cd06475           4 EIRQTADRWKVSLDVNHFAPEELVVKTKDGVVEITGKHEEKQDEHGFVSRCFTRKYTLPPGVDPTAVTSSLSPDGILTVE   83 (86)
T ss_pred             eEEEcCCeEEEEEECCCCCHHHEEEEEECCEEEEEEEECcCcCCCCEEEEEEEEEEECCCCCCHHHcEEEECCCCeEEEE
Confidence            6889999999999999999999999999999999875321    1    13556778999999999998887 7777776


Q ss_pred             E
Q 017264          248 L  248 (374)
Q Consensus       248 L  248 (374)
                      |
T Consensus        84 l   84 (86)
T cd06475          84 A   84 (86)
T ss_pred             e
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Hsp27 shows enhanced synthesis in response to stress. It is a molecular chaperone which interacts with a large number of different proteins. It is found in many types of human cells including breast, uterus, cervix, platelets and cancer cells. Hsp27 has diverse cellular functions including, chaperoning, regulation of actin polymerization, keratinocyte differentiation, regulation of inflammatory pathways in keratinocytes, and protection from oxidative stress through modulating glutathione levels. It is also a subunit of AUF1-containing protein complexes. It has been linked to several transduction pathways regulating cellular functions including differentiat

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.81  E-value=0.0069  Score=55.46  Aligned_cols=99  Identities=15%  Similarity=0.118  Sum_probs=84.6

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHH----h--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIE----I--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~----~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      ...|...++.||-..|-.+|++.-+    +  -..+...+.+.+.+|...++|.+|...+.+++..+|.++.+.-++|.|
T Consensus       216 s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALc  295 (366)
T KOG2796|consen  216 SGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALC  295 (366)
T ss_pred             HHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCCchhhhchHHHH
Confidence            4578889999999999999984332    2  233456777788888888999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      +..+|+..+|+..++.+++..|...
T Consensus       296 llYlg~l~DAiK~~e~~~~~~P~~~  320 (366)
T KOG2796|consen  296 LLYLGKLKDALKQLEAMVQQDPRHY  320 (366)
T ss_pred             HHHHHHHHHHHHHHHHHhccCCccc
Confidence            9999999999999999999999754

>cd06497 ACD_alphaA-crystallin_HspB4 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaA-crystallin (HspB4, 20kDa)

Probab=96.76  E-value=0.0068  Score=46.38  Aligned_cols=72  Identities=10%  Similarity=0.119  Sum_probs=59.3

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC----CC----CeeeeccccccccccCceEEEE-cCcEEEEEEe
Q 017264          179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP----GE----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLA  249 (374)
Q Consensus       179 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~----~~----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~  249 (374)
                      +.+++.+.|.+.++|+.++++.|++..+.|.|+....    ++    .+|.-.+.|...|++++.+-.+ ....+.|+|.
T Consensus         6 ~e~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~Vd~~~i~A~~~~dGvL~I~~P   85 (86)
T cd06497           6 RSDRDKFTIYLDVKHFSPEDLTVKVLDDYVEIHGKHSERQDDHGYISREFHRRYRLPSNVDQSAITCSLSADGMLTFSGP   85 (86)
T ss_pred             EEcCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHeEEEeCCCCEEEEEec
Confidence            5688999999999999999999999999999987431    11    1255567899999999999998 5778999887


Q ss_pred             e
Q 017264          250 K  250 (374)
Q Consensus       250 K  250 (374)
                      |
T Consensus        86 K   86 (86)
T cd06497          86 K   86 (86)
T ss_pred             C
Confidence            6

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 does not belong to this group. Mutations inHspB4 have been associated with Autosomal Dominant Congenital Cataract (ADCC). The chaperone-like functions of HspB4 are considered important for maintaining lens transparency and preventing cataract.

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.76  E-value=0.012  Score=55.52  Aligned_cols=63  Identities=17%  Similarity=0.325  Sum_probs=59.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p   67 (374)
                      +.++|-+.+-.|||..||.-+++|+.++|.+..+|++-|.|++.+.++.+|+.+++..++++.
T Consensus       122 Y~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Akc~~eLe~~~~a~nw~ee~~~~d~  184 (390)
T KOG0551|consen  122 YTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAKCLLELERFAEAVNWCEEGLQIDD  184 (390)
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhHHHHHHHHHHHHHHHHhhhhhhhH
Confidence            578999999999999999999999999999999999999999999999999999999987764

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.71  E-value=0.01  Score=48.75  Aligned_cols=66  Identities=24%  Similarity=0.175  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      .+-..|.++...|+++.|++-|.++|.+.|..+.+|.++++++.-.|+.++|+..+.+++++..+.
T Consensus        45 ~LEl~~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~  110 (175)
T KOG4555|consen   45 ELELKAIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ  110 (175)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc
Confidence            344567788889999999999999999999999999999999999999999999999999998654

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=96.70  E-value=0.013  Score=49.09  Aligned_cols=61  Identities=21%  Similarity=0.191  Sum_probs=52.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~   64 (374)
                      .+...+..+...|+++.|+..+.+++..+|.+-.++..+..+|..+|++.+|+..|.++..
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~  124 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRR  124 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            3456677888999999999999999999999999999999999999999999999987764

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.69  E-value=0.046  Score=47.72  Aligned_cols=117  Identities=18%  Similarity=0.116  Sum_probs=92.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .-+...+++.|..+++..|...++...+.+|..  +.-...+|.+|..+|++.+|...|+.++...|+. .+..+++..+
T Consensus       125 a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~-~ar~~Y~e~L  203 (251)
T COG4700         125 AMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGP-QARIYYAEML  203 (251)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCH-HHHHHHHHHH
Confidence            346789999999999999999999999987753  5666777888999999999999999999998865 5678899999


Q ss_pred             HHhcCHHHHHHHHHHHHh----cCCCC-hhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGAS----LAPGD-SRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~----l~p~~-~~~~~~~~~~~~~l~~~  120 (374)
                      ..+|+.++|...+.....    -.|.- +..+.|+..+..++++.
T Consensus       204 a~qgr~~ea~aq~~~v~d~~~r~~~H~rkh~reW~~~A~~~~~qs  248 (251)
T COG4700         204 AKQGRLREANAQYVAVVDTAKRSRPHYRKHHREWIKTANERLKQS  248 (251)
T ss_pred             HHhcchhHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHhh
Confidence            999999888876655432    22221 24677777777666653

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.69  E-value=0.0031  Score=38.29  Aligned_cols=31  Identities=26%  Similarity=0.339  Sum_probs=19.5

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ++|++|.+++.+|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4566666666666666666666666665554

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=96.68  E-value=0.002  Score=58.00  Aligned_cols=76  Identities=16%  Similarity=0.293  Sum_probs=66.8

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .-|.+++.-++|..|+..|.+||.++|..+..|-+++.||+++.+++.....+.++++++|+.......++.+...
T Consensus        15 E~gnk~f~~k~y~~ai~~y~raI~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~   90 (284)
T KOG4642|consen   15 EQGNKCFIPKRYDDAIDCYSRAICINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQ   90 (284)
T ss_pred             hccccccchhhhchHHHHHHHHHhcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHh
Confidence            3466777778999999999999999999999999999999999999999999999999999887766666665544

>KOG4151 consensus Myosin assembly protein/sexual cycle protein and related proteins [Posttranslational modification, protein turnover, chaperones; Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.65  E-value=0.0083  Score=62.27  Aligned_cols=115  Identities=22%  Similarity=0.353  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWRK   76 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l--~~~~~Al~~~~~al~l~p~~~~a~~~l   76 (374)
                      ..+...|+.+|+.++|..|.-.|..++.+-|.+    ...+.+++.||..+  ++|..++..+..|+...|.+..+++.+
T Consensus        54 ~~~~~E~n~~~~K~d~~~~~~~~~~~~~llp~~~~~~a~~~~~~~s~~m~~~l~~~~~~~~E~~la~~~~p~i~~~Ll~r  133 (748)
T KOG4151|consen   54 LELKEEGNKLFQKRDYEGAMFRYDCAIKLLPKDHHVVATLRSNQASCYMQLGLGEYPKAIPECELALESQPRISKALLKR  133 (748)
T ss_pred             HHHHhhhhHHhhhhhhhccchhhhhhheeccccchhhhhHHHHHHHHHhhcCccchhhhcCchhhhhhccchHHHHHhhh
Confidence            456789999999999999999999999987733    56777788888765  799999999999999999999999999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +.+|..+++++-|+..+.-.....|.+..+.....+++..+
T Consensus       134 ~~~y~al~k~d~a~rdl~i~~~~~p~~~~~~eif~elk~ll  174 (748)
T KOG4151|consen  134 ARKYEALNKLDLAVRDLRIVEKMDPSNVSASEIFEELKGLL  174 (748)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhcCCCCcchHHHHHHHHHHHH
Confidence            99999999999999998888889999977666556666555

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.64  E-value=0.0065  Score=56.72  Aligned_cols=74  Identities=22%  Similarity=0.262  Sum_probs=58.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      ..+.|....+.|+.+.|..+|..||.+.|.++.++..+|.....-++.-+|-++|-+|+.+.|.+.+++.+++.
T Consensus       119 Al~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  119 ALKAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            34566677788888888888888888888888888888888777778888888888888888888887776654

>cd06526 metazoan_ACD Alpha-crystallin domain (ACD) of metazoan alpha-crystallin-type small(s) heat shock proteins (Hsps)

Probab=96.64  E-value=0.0078  Score=45.65  Aligned_cols=68  Identities=19%  Similarity=0.194  Sum_probs=57.1

Q ss_pred             CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC--------CeeeeccccccccccCceEEEEcC-cEEEEEEee
Q 017264          183 EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE--------EAYHFQPRLFGKIIPAKCRYEVLS-TKVEIRLAK  250 (374)
Q Consensus       183 ~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~--------~~y~~~~~L~~~I~p~~s~~~v~~-~kiei~L~K  250 (374)
                      +.+.|.+.++|+.++++.|.+..+.|.|+......        ..|.-.+.|...|+++..+.++.. ..+.|++.|
T Consensus         7 ~~~~v~~dlpG~~~edI~v~v~~~~L~I~g~~~~~~~~~~~~~~~f~r~~~LP~~vd~~~i~A~~~~~GvL~I~~Pk   83 (83)
T cd06526           7 EKFQVTLDVKGFKPEELKVKVSDNKLVVEGKHEEREDEHGYVSREFTRRYQLPEGVDPDSVTSSLSSDGVLTIEAPK   83 (83)
T ss_pred             eeEEEEEECCCCCHHHcEEEEECCEEEEEEEEeeeccCCCEEEEEEEEEEECCCCCChHHeEEEeCCCcEEEEEecC
Confidence            58899999999999999999999999998753221        246677899999999999999988 788888865

sHsps are small stress induced proteins with monomeric masses between 12 -43 kDa, whose common feature is the Alpha-crystallin domain (ACD). sHsps are generally active as large oligomers consisting of multiple subunits, and are believed to be ATP-independent chaperones that prevent aggregation and are important in refolding in combination with other Hsps.

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.61  E-value=0.0064  Score=57.97  Aligned_cols=96  Identities=17%  Similarity=0.142  Sum_probs=81.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS---------   68 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---------   68 (374)
                      .+...|+++.-.+.|+.+++.|..|++...++      ..++..+|..|-+++++++|+-+..+|+.+-..         
T Consensus       124 ~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~k  203 (518)
T KOG1941|consen  124 VSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLK  203 (518)
T ss_pred             hhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHH
Confidence            34567899999999999999999999984443      357888999999999999999999999987532         


Q ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           69 -MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                       ..-++|+++++|..+|+..+|.++++.+.++
T Consensus       204 yr~~~lyhmaValR~~G~LgdA~e~C~Ea~kl  235 (518)
T KOG1941|consen  204 YRAMSLYHMAVALRLLGRLGDAMECCEEAMKL  235 (518)
T ss_pred             HHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence             2346788999999999999999999998765

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=96.60  E-value=0.042  Score=53.01  Aligned_cols=110  Identities=13%  Similarity=0.099  Sum_probs=87.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      ...+..+...|++++|.+...++|+..-+. . ++.+.- ..+.+++..=+..+++.+...|+++..++.+|..|+..+.
T Consensus       267 ~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~-~-L~~~~~-~l~~~d~~~l~k~~e~~l~~h~~~p~L~~tLG~L~~k~~~  343 (400)
T COG3071         267 VAYAERLIRLGDHDEAQEIIEDALKRQWDP-R-LCRLIP-RLRPGDPEPLIKAAEKWLKQHPEDPLLLSTLGRLALKNKL  343 (400)
T ss_pred             HHHHHHHHHcCChHHHHHHHHHHHHhccCh-h-HHHHHh-hcCCCCchHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhH
Confidence            345677889999999999999999985543 2 222222 2356888999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |.+|..+|+.++.+.|+.. -..+++.+..+++.
T Consensus       344 w~kA~~~leaAl~~~~s~~-~~~~la~~~~~~g~  376 (400)
T COG3071         344 WGKASEALEAALKLRPSAS-DYAELADALDQLGE  376 (400)
T ss_pred             HHHHHHHHHHHHhcCCChh-hHHHHHHHHHHcCC
Confidence            9999999999999998754 45566666655544

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=96.59  E-value=0.011  Score=40.85  Aligned_cols=42  Identities=21%  Similarity=0.195  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +.++.+|.+++++|+|.+|+.+++.+|+++|++..+.-....
T Consensus         2 d~lY~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~~L~~~   43 (53)
T PF14853_consen    2 DCLYYLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQSLKEL   43 (53)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHHHHHHH
Confidence            456788889999999999999999999999988776554433

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.58  E-value=0.014  Score=59.09  Aligned_cols=93  Identities=14%  Similarity=0.068  Sum_probs=45.7

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN----SAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATAC   80 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~----~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~   80 (374)
                      +..|..+...|+.++|++.|++++.....    ....++.+|.||.-+++|++|..++.+.++.+.= .+-..|..|.|+
T Consensus       271 ~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  271 FFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            44555555555566666655555532111    1234455555555555566665555555554321 122233345555


Q ss_pred             HHhcCH-------HHHHHHHHHHHh
Q 017264           81 MKLEEY-------ETAKVALEKGAS   98 (374)
Q Consensus        81 ~~lg~~-------~eA~~~~~~a~~   98 (374)
                      ..+++.       ++|...|.++..
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHH
Confidence            555555       555555554433

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>cd06498 ACD_alphaB-crystallin_HspB5 Alpha-crystallin domain found in the small heat shock protein (sHsp) alphaB-crystallin (HspB5, 20kDa)

Probab=96.58  E-value=0.011  Score=44.93  Aligned_cols=72  Identities=8%  Similarity=0.101  Sum_probs=58.9

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---CC-----eeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264          180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---EE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  250 (374)
Q Consensus       180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  250 (374)
                      -+++.+.|.+.++|+.++++.|++..+.|+|+.....   +.     .|.=.+.|...|+++..+-+.. ...+.|+|-|
T Consensus         4 ~~~~~~~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~~~dGvL~I~lPk   83 (84)
T cd06498           4 LEKDKFSVNLDVKHFSPEELKVKVLGDFIEIHGKHEERQDEHGFISREFQRKYRIPADVDPLTITSSLSPDGVLTVCGPR   83 (84)
T ss_pred             eCCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEcceeCCCCEEEEEEEEEEECCCCCChHHcEEEeCCCCEEEEEEeC
Confidence            4678899999999999999999999999999874321   11     2555678999999999999996 8899999877


Q ss_pred             c
Q 017264          251 A  251 (374)
Q Consensus       251 ~  251 (374)
                      +
T Consensus        84 ~   84 (84)
T cd06498          84 K   84 (84)
T ss_pred             C
Confidence            4

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. HspB4 does not belong to this group. HspB5 shows increased synthesis in response to stress. HspB5 is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. Its functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its oligomerization and anti-apoptotic activ

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=96.58  E-value=0.12  Score=47.36  Aligned_cols=111  Identities=15%  Similarity=0.099  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHc--------cCHHHHHHHHHHHHHhCCCC--
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKL--------QNFTEAVADANRAIELEPSM--   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l--------~~~~~Al~~~~~al~l~p~~--   69 (374)
                      +.+...+.++++.++|+.|+...++.+++.|.++   .+++-+|.+++..        .-..+|+..|...+..-|+.  
T Consensus        72 qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~YlkgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Y  151 (254)
T COG4105          72 QAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYLKGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRY  151 (254)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHHHHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcc
Confidence            4578899999999999999999999999988774   5677778887664        33457888999999999863  


Q ss_pred             ---HH----------HH--HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           70 ---SK----------AY--WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        70 ---~~----------a~--~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                         +.          +.  +..|..|...|.|-.|+.-++..++..|+.......+..+
T Consensus       152 a~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l  210 (254)
T COG4105         152 APDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARL  210 (254)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHH
Confidence               11          11  2347778889999999999999999887766544444333

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.54  E-value=0.05  Score=50.01  Aligned_cols=78  Identities=21%  Similarity=0.167  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           39 FADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        39 ~~~ra~~~~~l----~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      +..+|.++.++    +++.+|.-.|+...+.-+-.+..+...+.|+..+|+|++|...++.++.-++.+++...++--|-
T Consensus       172 LtQLA~awv~la~ggek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a  251 (299)
T KOG3081|consen  172 LTQLAQAWVKLATGGEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLA  251 (299)
T ss_pred             HHHHHHHHHHHhccchhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            34444444443    34555555555555434444556666788888888888888888888888888887766665554


Q ss_pred             HH
Q 017264          115 ER  116 (374)
Q Consensus       115 ~~  116 (374)
                      ..
T Consensus       252 ~~  253 (299)
T KOG3081|consen  252 LH  253 (299)
T ss_pred             HH
Confidence            33

>smart00028 TPR Tetratricopeptide repeats

Probab=96.49  E-value=0.0051  Score=35.91  Aligned_cols=32  Identities=31%  Similarity=0.473  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .+++++|.++..+++++.|..+|++++.++|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            35666777777777777777777776666554

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.48  E-value=0.042  Score=50.48  Aligned_cols=116  Identities=12%  Similarity=0.105  Sum_probs=94.2

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH----hCC--CCHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIE----LEP--SMSKAYWRKA   77 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~----l~p--~~~~a~~~lg   77 (374)
                      +...++.+.-.|.|.-.+.+|.+.++.+ |..+.+...++..-++.|+...|..+|++.-.    ++.  ...-++.+.+
T Consensus       180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a  259 (366)
T KOG2796|consen  180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA  259 (366)
T ss_pred             HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence            4566788889999999999999999998 66788889999999999999999999985443    332  3445778889


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           78 TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        78 ~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+|...++|..|...|.+++..++.++......+-|..-++..
T Consensus       260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l  302 (366)
T KOG2796|consen  260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKL  302 (366)
T ss_pred             hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHH
Confidence            9999999999999999999999999887655555555444433

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=96.46  E-value=0.0075  Score=60.65  Aligned_cols=106  Identities=14%  Similarity=0.072  Sum_probs=93.1

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~   86 (374)
                      .|...-..|+--.|+..+..|+...|... ..+.++|+++++-+..-+|-..+.+++.+.-.-+-.+|.+|.++..+.+.
T Consensus       613 aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i  692 (886)
T KOG4507|consen  613 AGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNI  692 (886)
T ss_pred             ccceeeecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhh
Confidence            34445567899999999999999988653 46789999999999999999999999999988888999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           87 ETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        87 ~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      +.|++.|..++.++|.+..+..-+.++
T Consensus       693 ~~a~~~~~~a~~~~~~~~~~~~~l~~i  719 (886)
T KOG4507|consen  693 SGALEAFRQALKLTTKCPECENSLKLI  719 (886)
T ss_pred             HHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            999999999999999999887776554

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=96.40  E-value=0.0066  Score=36.77  Aligned_cols=31  Identities=26%  Similarity=0.303  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      +++.+|.||.++|++++|+..|++++...|+
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~~P~   32 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKRYPD   32 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence            4556666666666666666666666666554

>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]

Probab=96.40  E-value=0.013  Score=54.76  Aligned_cols=72  Identities=18%  Similarity=0.118  Sum_probs=63.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           41 DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      +.|.-..+.|+.++|...|+.|+.++|++++++..+|+.....++.-+|-.||-+++.+.|.|.++....++
T Consensus       121 ~~A~~~~~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALvnR~R  192 (472)
T KOG3824|consen  121 KAAGRSRKDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALVNRAR  192 (472)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHhhhhc
Confidence            344445677999999999999999999999999999999999999999999999999999999876555443

>cd06478 ACD_HspB4-5-6 Alpha-crystallin domain found in alphaA-crystallin (HspB4), alphaB-crystallin (HspB5), and the small heat shock protein (sHsp) HspB6, also known as Hsp20

Probab=96.31  E-value=0.019  Score=43.54  Aligned_cols=71  Identities=14%  Similarity=0.142  Sum_probs=57.2

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264          180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  250 (374)
Q Consensus       180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  250 (374)
                      .+++.+.|.+-++|+.++++.|++..+.|.|+....   .+     ..|.-.+.|...|+++..+-.+. ...+.|+|-|
T Consensus         4 ~~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~dGvL~I~~PK   83 (83)
T cd06478           4 LDKDRFSVNLDVKHFSPEELSVKVLGDFVEIHGKHEERQDEHGFISREFHRRYRLPPGVDPAAITSSLSADGVLTISGPR   83 (83)
T ss_pred             ecCceEEEEEECCCCCHHHeEEEEECCEEEEEEEEceEcCCCCEEEEEEEEEEECCCCcChHHeEEEECCCCEEEEEecC
Confidence            467899999999999999999999999999987432   11     12555678999999999888884 7788888865

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Alpha crystallin, an abundant protein in the mammalian lens, is a large (700 kDa) heteropolymer composed of HspB4 and HspB5, generally in a molar ratio of HspB4:HspB5 of 3:1. Only trace amounts of HspB4 are found in tissues other than the lens. HspB5 on the other hand is also expressed constitutively in other tissues including brain, heart, and type I and type IIa skeletal muscle fibers, and in several cancers including gliomas, renal cell carcinomas, basal-like and metaplastic breast carcinomas, and head and neck cancer. HspB5's functions include effects on the apoptotic pathway and on metastasis. Phosphorylation of HspB5 reduces its ol

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=96.29  E-value=0.061  Score=53.43  Aligned_cols=91  Identities=13%  Similarity=0.137  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-HHHHHHHHHHHH
Q 017264           19 ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-YETAKVALEKGA   97 (374)
Q Consensus        19 ~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-~~eA~~~~~~a~   97 (374)
                      ..-+.+|..|+..-+.+..++......-.+.+.+.+-...|.+++..+|++++.|...|.-.|..+. .+.|.+.|.+++
T Consensus        88 ~rIv~lyr~at~rf~~D~~lW~~yi~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgL  167 (568)
T KOG2396|consen   88 NRIVFLYRRATNRFNGDVKLWLSYIAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGL  167 (568)
T ss_pred             HHHHHHHHHHHHhcCCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHh
Confidence            4456789999999998999888876555566669999999999999999999999999999988877 899999999999


Q ss_pred             hcCCCChhHHHH
Q 017264           98 SLAPGDSRFTNL  109 (374)
Q Consensus        98 ~l~p~~~~~~~~  109 (374)
                      +++|+.+.+...
T Consensus       168 R~npdsp~Lw~e  179 (568)
T KOG2396|consen  168 RFNPDSPKLWKE  179 (568)
T ss_pred             hcCCCChHHHHH
Confidence            999999875443

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.27  E-value=0.041  Score=55.68  Aligned_cols=97  Identities=22%  Similarity=0.172  Sum_probs=81.2

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHHH
Q 017264           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETA   89 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA   89 (374)
                      ...+...|.+++...+...|+....++..|..+...|+.++|++.+++++.....    ..-+++.+|.++..+.+|++|
T Consensus       245 ~~~~~~~a~~lL~~~~~~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A  324 (468)
T PF10300_consen  245 EDVPLEEAEELLEEMLKRYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEA  324 (468)
T ss_pred             cCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHH
Confidence            3567788999999999999999999999999999999999999999999854433    234678899999999999999


Q ss_pred             HHHHHHHHhcCCCChhHHHHH
Q 017264           90 KVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        90 ~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      ..+|.+..+.+.-.+.+...+
T Consensus       325 ~~~f~~L~~~s~WSka~Y~Y~  345 (468)
T PF10300_consen  325 AEYFLRLLKESKWSKAFYAYL  345 (468)
T ss_pred             HHHHHHHHhccccHHHHHHHH
Confidence            999999988765544443333

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=96.25  E-value=0.006  Score=60.12  Aligned_cols=77  Identities=21%  Similarity=0.249  Sum_probs=70.2

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      -+++.++++.++|..|+.-+.+||+.+|....+|+.+|.+...++.+.+|+.+|+....+.|+.+.+...+..|-+.
T Consensus        42 anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~~  118 (476)
T KOG0376|consen   42 ANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEFKKALLDLEKVKKLAPNDPDATRKIDECNKI  118 (476)
T ss_pred             chhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999877766666544

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=96.25  E-value=0.065  Score=48.36  Aligned_cols=92  Identities=18%  Similarity=0.072  Sum_probs=67.8

Q ss_pred             HhccCHHHHHHHHHHHHHh----C-CCC--HHHHHHHHHHHHHccCHH-------HHHHHHHHHHHhCC------CCHHH
Q 017264           13 FIDDYFELAYDLYSQAIEI----S-PNS--AELFADRAQASIKLQNFT-------EAVADANRAIELEP------SMSKA   72 (374)
Q Consensus        13 ~~~~~y~~Al~~y~~aL~~----~-p~~--~~~~~~ra~~~~~l~~~~-------~Al~~~~~al~l~p------~~~~a   72 (374)
                      -....+++|++.|.-||-.    . +..  +.++..+|.+|..+++.+       .|+..|.+|+....      +....
T Consensus        88 ~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l  167 (214)
T PF09986_consen   88 SGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATL  167 (214)
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHH
Confidence            3456788999988877765    2 222  567788899998888854       45556666665442      23568


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      .|.+|.+++++|++++|+.+|.+++.......
T Consensus       168 ~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~  199 (214)
T PF09986_consen  168 LYLIGELNRRLGNYDEAKRWFSRVIGSKKASK  199 (214)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCC
Confidence            88999999999999999999999987655444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=96.16  E-value=0.091  Score=49.43  Aligned_cols=107  Identities=17%  Similarity=0.201  Sum_probs=84.4

Q ss_pred             HHHHHHHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHH
Q 017264            5 LEKKAKEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATAC   80 (374)
Q Consensus         5 l~~~g~~~~~-~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~   80 (374)
                      +...|..-+. .++...|...|+.+|+..|.+..++......+..+++...|...|++++..-+...   ..|-++...-
T Consensus        38 y~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE  117 (280)
T PF05843_consen   38 YVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFE  117 (280)
T ss_dssp             HHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHH
Confidence            4455665455 78888899999999999999999999999999999999999999999998766443   5677777777


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      ...|+.+......+++.++.|++..+.....
T Consensus       118 ~~~Gdl~~v~~v~~R~~~~~~~~~~~~~f~~  148 (280)
T PF05843_consen  118 SKYGDLESVRKVEKRAEELFPEDNSLELFSD  148 (280)
T ss_dssp             HHHS-HHHHHHHHHHHHHHTTTS-HHHHHHC
T ss_pred             HHcCCHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            8899999999999999999998665544443

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.15  E-value=0.084  Score=48.54  Aligned_cols=91  Identities=13%  Similarity=0.172  Sum_probs=79.8

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHH-HH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV-AL   93 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~-~~   93 (374)
                      .+.+..|.-.|.+.-...+..+..+...|.|++.+++|++|...++.|+..++++++.+.++-++-..+|.-.++.. .+
T Consensus       186 gek~qdAfyifeE~s~k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l  265 (299)
T KOG3081|consen  186 GEKIQDAFYIFEELSEKTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNL  265 (299)
T ss_pred             chhhhhHHHHHHHHhcccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHH
Confidence            34588899999998887888899999999999999999999999999999999999999999999999999877775 55


Q ss_pred             HHHHhcCCCChh
Q 017264           94 EKGASLAPGDSR  105 (374)
Q Consensus        94 ~~a~~l~p~~~~  105 (374)
                      .+.....|.++-
T Consensus       266 ~QLk~~~p~h~~  277 (299)
T KOG3081|consen  266 SQLKLSHPEHPF  277 (299)
T ss_pred             HHHHhcCCcchH
Confidence            666677777663

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.15  E-value=0.059  Score=58.88  Aligned_cols=94  Identities=15%  Similarity=0.012  Sum_probs=77.5

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKAYW   74 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~~~a~~   74 (374)
                      ...|..++..|+|+.|..++.+++...+..     ..++..+|.++...|++++|+..+.+++.+...      ...++.
T Consensus       456 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~  535 (903)
T PRK04841        456 ALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLL  535 (903)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHH
Confidence            346778889999999999999999864432     245677889999999999999999999976442      134667


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           75 RKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      .+|.+++..|++++|...+++++.+
T Consensus       536 ~la~~~~~~G~~~~A~~~~~~al~~  560 (903)
T PRK04841        536 QQSEILFAQGFLQAAYETQEKAFQL  560 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            8899999999999999999998876

>cd06470 ACD_IbpA-B_like Alpha-crystallin domain (ACD) found in Escherichia coli inclusion body-associated proteins IbpA and IbpB, and similar proteins

Probab=96.13  E-value=0.036  Score=42.68  Aligned_cols=73  Identities=12%  Similarity=0.167  Sum_probs=56.4

Q ss_pred             ccccccC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------------CCeeeeccccccccccCceEEEEc
Q 017264          176 HEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------------EEAYHFQPRLFGKIIPAKCRYEVL  240 (374)
Q Consensus       176 ~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------------~~~y~~~~~L~~~I~p~~s~~~v~  240 (374)
                      ++=++++ +.+.|.+.++|+.++++.|.+..+.|.|+.....              -..|.-.+.|...|+.+  +....
T Consensus         3 ~di~e~~~~~~~v~~~lPG~~kedi~v~~~~~~L~I~g~~~~~~~~~~~~~~~e~~~g~f~R~~~LP~~vd~~--~A~~~   80 (90)
T cd06470           3 YNIEKTGENNYRITLAVAGFSEDDLEIEVENNQLTVTGKKADEENEEREYLHRGIAKRAFERSFNLADHVKVK--GAELE   80 (90)
T ss_pred             eeeEEcCCCeEEEEEECCCCCHHHeEEEEECCEEEEEEEEcccccCCCcEEEEEEeceEEEEEEECCCCceEC--eeEEe
Confidence            3445664 8999999999999999999999999999863211              12466677888888876  57778


Q ss_pred             CcEEEEEEee
Q 017264          241 STKVEIRLAK  250 (374)
Q Consensus       241 ~~kiei~L~K  250 (374)
                      ...+.|+|.+
T Consensus        81 ~GvL~I~l~~   90 (90)
T cd06470          81 NGLLTIDLER   90 (90)
T ss_pred             CCEEEEEEEC
Confidence            8888888853

IbpA and IbpB are 16 kDa small heat shock proteins (sHsps). sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. IbpA and IbpB are produced during high-level production of various heterologous proteins, specifically human prorenin, renin and bovine insulin-like growth factor 2 (bIGF-2), and are strongly associated with inclusion bodies containing these heterologous proteins. IbpA and IbpB work as an integrated system to stabilize thermally aggregated proteins in a disaggregation competent state. The chaperone activity of IbpB is also significantly elevated as the temperature increases from normal to heat shock. The high temperature results in the disassociation of 2-3-MDa IbpB oligomers into smaller approximately 6

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=96.12  E-value=0.088  Score=52.08  Aligned_cols=101  Identities=15%  Similarity=0.184  Sum_probs=90.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      ++.-|.--..+++++.|...|.+||..+..+..+++..+.+-++.++.-.|...+++|+.+-|.--..||.+-.+--.+|
T Consensus        76 WikYaqwEesq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~Lg  155 (677)
T KOG1915|consen   76 WIKYAQWEESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLG  155 (677)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhc
Confidence            44556666778999999999999999999999999999999999999999999999999999998899999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChh
Q 017264           85 EYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +..-|.+.|++=+...|+...
T Consensus       156 Ni~gaRqiferW~~w~P~eqa  176 (677)
T KOG1915|consen  156 NIAGARQIFERWMEWEPDEQA  176 (677)
T ss_pred             ccHHHHHHHHHHHcCCCcHHH
Confidence            999999999998888887543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.03  E-value=0.069  Score=53.16  Aligned_cols=56  Identities=20%  Similarity=0.141  Sum_probs=30.1

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           41 DRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        41 ~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      .+|+|..++|+..+|+..+...++..|.  +..+++++-.+|..+++|.++...+.+.
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY  321 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY  321 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            3455555555555555555555555442  3345555555555555555555555543

The molecular function of this protein is uncertain.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=96.01  E-value=0.057  Score=58.98  Aligned_cols=96  Identities=9%  Similarity=0.040  Sum_probs=77.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--------CH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS--------MS   70 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--------~~   70 (374)
                      +...|..+...|++++|+..|.+++......      ...+..+|.+++..|++.+|...+.+++.+...        ..
T Consensus       494 ~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~  573 (903)
T PRK04841        494 TSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHE  573 (903)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHH
Confidence            4567888899999999999999999763321      346677899999999999999999999986321        12


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ..+..+|.+++..|++++|...+.+++.+.
T Consensus       574 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~  603 (903)
T PRK04841        574 FLLRIRAQLLWEWARLDEAEQCARKGLEVL  603 (903)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhHHhh
Confidence            345678999999999999999999988764

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=96.00  E-value=0.01  Score=53.23  Aligned_cols=59  Identities=25%  Similarity=0.321  Sum_probs=43.0

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ..+.++.+.|.+.|.+|+.+.|.+...|||+|......|+++.|...|++.++++|.+-
T Consensus         5 ~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D~   63 (287)
T COG4976           5 LAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPEDH   63 (287)
T ss_pred             hcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCcccc
Confidence            34556777777777777777777777777777777777777777777777777777664

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.99  E-value=0.015  Score=36.55  Aligned_cols=23  Identities=17%  Similarity=0.096  Sum_probs=10.8

Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHH
Q 017264           73 YWRKATACMKLEEYETAKVALEK   95 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~   95 (374)
                      |.++|.+|..+|+|++|+.+|++
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~   24 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQ   24 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHH
Confidence            34444555555555555555554

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.99  E-value=0.09  Score=55.94  Aligned_cols=91  Identities=13%  Similarity=0.070  Sum_probs=67.3

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~   86 (374)
                      .....+.+.|++++|++++.+. ...|+ ...|..+..++...|+++.|...+++++.+.|.+...|..+..+|...|++
T Consensus       467 ~li~~l~r~G~~~eA~~~~~~~-~~~p~-~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~  544 (697)
T PLN03081        467 CMIELLGREGLLDEAYAMIRRA-PFKPT-VNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQ  544 (697)
T ss_pred             hHHHHHHhcCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCH
Confidence            3455667777777777777653 22333 455777777777888888888888888888888777888888888888888


Q ss_pred             HHHHHHHHHHHhc
Q 017264           87 ETAKVALEKGASL   99 (374)
Q Consensus        87 ~eA~~~~~~a~~l   99 (374)
                      ++|...++...+.
T Consensus       545 ~~A~~v~~~m~~~  557 (697)
T PLN03081        545 AEAAKVVETLKRK  557 (697)
T ss_pred             HHHHHHHHHHHHc
Confidence            8888888876543

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.96  E-value=0.11  Score=46.84  Aligned_cols=100  Identities=20%  Similarity=0.156  Sum_probs=74.7

Q ss_pred             HHHHHHHHhc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HH
Q 017264            6 EKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SK   71 (374)
Q Consensus         6 ~~~g~~~~~~-~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-------~~   71 (374)
                      +..|..|-.. .+++.||.+|.+|-+.....      ...++..|..-..+++|.+|+..|++.....-++       -.
T Consensus       117 ~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~Kd  196 (288)
T KOG1586|consen  117 IEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKD  196 (288)
T ss_pred             hhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHH
Confidence            4566666655 78999999999988763322      2345555655667899999999999888654433       23


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .++..|.|++...+.-.+...+++..+++|.-..
T Consensus       197 yflkAgLChl~~~D~v~a~~ALeky~~~dP~F~d  230 (288)
T KOG1586|consen  197 YFLKAGLCHLCKADEVNAQRALEKYQELDPAFTD  230 (288)
T ss_pred             HHHHHHHHhHhcccHHHHHHHHHHHHhcCCcccc
Confidence            5667788889989999999999999999997553

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=95.96  E-value=0.07  Score=39.75  Aligned_cols=64  Identities=17%  Similarity=0.226  Sum_probs=52.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~---~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +...+..|..+|...+.++||..+.++|+..++...   ++-.++.+|...|+|.+++.++.+=+.+
T Consensus         6 ak~~ie~GlkLY~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~~Q~~~   72 (80)
T PF10579_consen    6 AKQQIEKGLKLYHQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFALQQLEI   72 (80)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456788999999999999999999999999888764   4455667888899999999987666554

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PRK10743 heat shock protein IbpA; Provisional

Probab=95.92  E-value=0.047  Score=45.60  Aligned_cols=75  Identities=11%  Similarity=0.119  Sum_probs=61.0

Q ss_pred             Ccccc-ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC----------eeeeccccccccccCceEEEEc
Q 017264          175 RHEFY-QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE----------AYHFQPRLFGKIIPAKCRYEVL  240 (374)
Q Consensus       175 r~~W~-Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~----------~y~~~~~L~~~I~p~~s~~~v~  240 (374)
                      .++-+ .+++.+.|.+.++|+.++||.|++..+.|+|+....   .+.          .|.-.+.|-..|++++  -+..
T Consensus        36 ~~di~ee~~~~~~v~aelPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~~~LP~~Vd~~~--A~~~  113 (137)
T PRK10743         36 PYNVELVDENHYRIAIAVAGFAESELEITAQDNLLVVKGAHADEQKERTYLYQGIAERNFERKFQLAENIHVRG--ANLV  113 (137)
T ss_pred             cEEEEEcCCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEECccccCCcEEEEEEECCEEEEEEECCCCcccCc--CEEe
Confidence            36878 489999999999999999999999999999987421   111          3555678999999984  7778


Q ss_pred             CcEEEEEEeec
Q 017264          241 STKVEIRLAKA  251 (374)
Q Consensus       241 ~~kiei~L~K~  251 (374)
                      ..-+.|+|-|.
T Consensus       114 dGVL~I~lPK~  124 (137)
T PRK10743        114 NGLLYIDLERV  124 (137)
T ss_pred             CCEEEEEEeCC
Confidence            88999999986

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.92  E-value=0.012  Score=36.88  Aligned_cols=29  Identities=10%  Similarity=0.195  Sum_probs=25.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      +|.++|.+|.++|+|++|+..|++++.+.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l~   29 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALALA   29 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            47899999999999999999999977654

>smart00028 TPR Tetratricopeptide repeats

Probab=95.89  E-value=0.014  Score=33.96  Aligned_cols=32  Identities=31%  Similarity=0.528  Sum_probs=22.5

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .++..+|.+|..+++++.|+..+.+++.+.|.
T Consensus         2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~   33 (34)
T smart00028        2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN   33 (34)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence            34667777777777777777777777776654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=95.88  E-value=0.14  Score=54.10  Aligned_cols=100  Identities=17%  Similarity=0.038  Sum_probs=85.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      ..-.|..+++.|.+++|+.+++..-...+++-..+-.+-.||..++++++|...|++++..+|+ -+..+.+..+|.+.+
T Consensus        46 ~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~-eell~~lFmayvR~~  124 (932)
T KOG2053|consen   46 KVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPS-EELLYHLFMAYVREK  124 (932)
T ss_pred             HHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCc-HHHHHHHHHHHHHHH
Confidence            4567889999999999997777666667778888888999999999999999999999999999 888999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChh
Q 017264           85 EYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .|.+-.+.--+..+..|.++-
T Consensus       125 ~yk~qQkaa~~LyK~~pk~~y  145 (932)
T KOG2053|consen  125 SYKKQQKAALQLYKNFPKRAY  145 (932)
T ss_pred             HHHHHHHHHHHHHHhCCcccc
Confidence            998766665566667787764

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=95.87  E-value=0.081  Score=57.45  Aligned_cols=110  Identities=16%  Similarity=0.154  Sum_probs=86.6

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHc-------cCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKL-------QNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l-------~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      .++++..+.|+.|+..|.++-..-|.-   .++.+..|.+++..       ..+.+|+.-|++.- -.|.-+--|+.+|.
T Consensus       482 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~  560 (932)
T PRK13184        482 PDAFLAEKLYDQALIFYRRIRESFPGRKEGYEAQFRLGITLLEKASEQGDPRDFTQALSEFSYLH-GGVGAPLEYLGKAL  560 (932)
T ss_pred             cHHHHhhHHHHHHHHHHHHHhhcCCCcccchHHHHHhhHHHHHHHHhcCChHHHHHHHHHHHHhc-CCCCCchHHHhHHH
Confidence            467888999999999999988877654   47888888887664       24666666665432 44666778999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|.++|+|++-+.||..|++..|.++.+......+-.++-.
T Consensus       561 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  601 (932)
T PRK13184        561 VYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHE  601 (932)
T ss_pred             HHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHH
Confidence            99999999999999999999999999877766655555443

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.84  E-value=0.25  Score=54.88  Aligned_cols=88  Identities=11%  Similarity=0.021  Sum_probs=42.9

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHH
Q 017264           10 KEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~   87 (374)
                      ..+.+.|++++|+++|..+++.. ..+...|..+..+|.+.|++++|+..|+....... -+...|-.+..+|.+.|+++
T Consensus       657 ~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~e  736 (1060)
T PLN03218        657 DVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLP  736 (1060)
T ss_pred             HHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence            34444555555555555544432 22344455555555555555555555555443221 12334445555555555555


Q ss_pred             HHHHHHHHHH
Q 017264           88 TAKVALEKGA   97 (374)
Q Consensus        88 eA~~~~~~a~   97 (374)
                      +|+..|....
T Consensus       737 eAlelf~eM~  746 (1060)
T PLN03218        737 KALEVLSEMK  746 (1060)
T ss_pred             HHHHHHHHHH
Confidence            5555555443

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=95.77  E-value=0.22  Score=49.68  Aligned_cols=101  Identities=17%  Similarity=0.124  Sum_probs=73.4

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------C----------
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------S----------   68 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p----------~----------   68 (374)
                      -..+.+..+.+.-|++-.+||+++|+.+.+|+-+|.-.  .....+|...+++|++...          .          
T Consensus       175 Mq~AWRERnp~aRIkaA~eALei~pdCAdAYILLAEEe--A~Ti~Eae~l~rqAvkAgE~~lg~s~~~~~~g~~~e~~~~  252 (539)
T PF04184_consen  175 MQKAWRERNPQARIKAAKEALEINPDCADAYILLAEEE--ASTIVEAEELLRQAVKAGEASLGKSQFLQHHGHFWEAWHR  252 (539)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHhhhhhhHHHhhccccc--ccCHHHHHHHHHHHHHHHHHhhchhhhhhcccchhhhhhc
Confidence            34566789999999999999999999999999887531  2334555555555554321          0          


Q ss_pred             -----CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHH
Q 017264           69 -----MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIK  111 (374)
Q Consensus        69 -----~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~  111 (374)
                           ..-+.+++|.|+.++|+.++|+..|+..++..|..  ..++.++-
T Consensus       253 Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLi  302 (539)
T PF04184_consen  253 RDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLI  302 (539)
T ss_pred             cccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHH
Confidence                 12345689999999999999999999999888753  33444443

The molecular function of this protein is uncertain.

>cd06476 ACD_HspB2_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB2/heat shock 27kDa protein 2 and similar proteins

Probab=95.75  E-value=0.055  Score=41.05  Aligned_cols=70  Identities=16%  Similarity=0.127  Sum_probs=55.8

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCceEEEEc-CcEEEEEEee
Q 017264          181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEVL-STKVEIRLAK  250 (374)
Q Consensus       181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~K  250 (374)
                      .++...|.+.++|+.++++.|++..+.|.|+....   .+.     +|.-.+.|...|+++.-+-+.. ...+.|+|-|
T Consensus         5 ~~d~y~v~~dlpG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~v~A~~~~dGvL~I~~Pr   83 (83)
T cd06476           5 EDDKYQVFLDVCHFTPDEITVRTVDNLLEVSARHPQRMDRHGFVSREFTRTYILPMDVDPLLVRASLSHDGILCIQAPR   83 (83)
T ss_pred             cCCeEEEEEEcCCCCHHHeEEEEECCEEEEEEEEcceecCCCEEEEEEEEEEECCCCCChhhEEEEecCCCEEEEEecC
Confidence            46788899999999999999999999999987431   111     2444678999999999999996 7788888754

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB2 is preferentially and constitutively expressed in skeletal muscle and heart. HspB2 shows homooligomeric activity and forms aggregates in muscle cytosol. Although its expression is not induced by heat shock, it redistributes to the insoluble fraction in response to heat shock. In the mouse heart, HspB2 plays a role in maintaining energetic balance, by protecting cardiac energetics during ischemia/reperfusion, and allowing for increased work during acute inotropic challenge. hHspB2 [previously also known as myotonic dystrophy protein kinase (DMPK) binding protein (MKBP)] is selectively up-regulated in skeletal muscles from myotonic dystrophy patients.

>PLN03218 maturation of RBCL 1; Provisional

Probab=95.72  E-value=0.27  Score=54.64  Aligned_cols=89  Identities=10%  Similarity=0.088  Sum_probs=41.6

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL   83 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~----~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-p~~~~a~~~lg~~~~~l   83 (374)
                      ...+.+.|++++|.++|.+....    .|+ ...|..+..+|.+.|++++|++.|+...+.+ +.+...|..+..+|.+.
T Consensus       549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD-~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~  627 (1060)
T PLN03218        549 ISACGQSGAVDRAFDVLAEMKAETHPIDPD-HITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQK  627 (1060)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhcCCCCCc-HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhc
Confidence            34444455555555555544431    222 3344444445555555555555555554443 22333444444455555


Q ss_pred             cCHHHHHHHHHHHHh
Q 017264           84 EEYETAKVALEKGAS   98 (374)
Q Consensus        84 g~~~eA~~~~~~a~~   98 (374)
                      |++++|+..|....+
T Consensus       628 G~~deAl~lf~eM~~  642 (1060)
T PLN03218        628 GDWDFALSIYDDMKK  642 (1060)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            555555555554443

>cd06481 ACD_HspB9_like Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB9 and similar proteins

Probab=95.59  E-value=0.055  Score=41.44  Aligned_cols=68  Identities=15%  Similarity=0.202  Sum_probs=53.6

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----C-C------CeeeeccccccccccCceEEEE-cCcEEEEE
Q 017264          181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-E------EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  247 (374)
Q Consensus       181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-~------~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~  247 (374)
                      ..+.+.|.+.++|+.+++|.|++..+.|.|+....     + +      ..|.-.+.|...|+++..+..+ ....+.|.
T Consensus         5 ~~d~~~v~~dlpG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~~~~~~F~R~~~LP~~Vd~~~i~A~~~~dGvL~I~   84 (87)
T cd06481           5 GKEGFSLKLDVRGFSPEDLSVRVDGRKLVVTGKREKKNEDEKGSFSYEYQEFVREAQLPEHVDPEAVTCSLSPSGHLHIR   84 (87)
T ss_pred             ccceEEEEEECCCCChHHeEEEEECCEEEEEEEEeeecccCCCcEEEEeeEEEEEEECCCCcChHHeEEEeCCCceEEEE
Confidence            45788999999999999999999999999987421     1 1      2355567899999999988888 56677776


Q ss_pred             E
Q 017264          248 L  248 (374)
Q Consensus       248 L  248 (374)
                      +
T Consensus        85 ~   85 (87)
T cd06481          85 A   85 (87)
T ss_pred             c
Confidence            5

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB9 is expressed exclusively in the normal testis and in various tumor samples and is a cancer/testis antigen. hHspB9 interacts with TCTEL1 (T-complex testis expressed protein -1), a subunit of dynein. hHspB9 and TCTEL1 are co-expressed in similar cells within the testis and in tumor cells. Included in this group is Xenopus Hsp30, a developmentally-regulated heat-inducible molecular chaperone.

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=95.49  E-value=0.089  Score=55.98  Aligned_cols=60  Identities=17%  Similarity=0.057  Sum_probs=32.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +......+.+.|++++|+.+|.+....  .|+ ...|..+..++.++|++++|.+.+..+++.
T Consensus       293 ~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd-~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~  354 (697)
T PLN03081        293 WNSMLAGYALHGYSEEALCLYYEMRDSGVSID-QFTFSIMIRIFSRLALLEHAKQAHAGLIRT  354 (697)
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhccchHHHHHHHHHHHHh
Confidence            334455566666666666666665443  222 344555555555555555555555555444

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=95.48  E-value=0.17  Score=42.60  Aligned_cols=84  Identities=15%  Similarity=-0.073  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...........+.+++..++...--+.|+.+++...-|..|+..|++.+|++.++....-.+..+-+--.++.|++.+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            35566667777999999999998877789999999999999999999999999999999998888888888899999999


Q ss_pred             cCHH
Q 017264           84 EEYE   87 (374)
Q Consensus        84 g~~~   87 (374)
                      |+.+
T Consensus        92 ~Dp~   95 (153)
T TIGR02561        92 GDAE   95 (153)
T ss_pred             CChH
Confidence            9864

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.46  E-value=0.17  Score=39.04  Aligned_cols=49  Identities=12%  Similarity=0.161  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (374)
Q Consensus        21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~   69 (374)
                      .+..+.+++..+|.+..+.+.+|.++...|++++|+..+-.+++.++++
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~   55 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDY   55 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTC
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence            3455667777777777777777777777777777777777777776654

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.44  E-value=0.11  Score=49.24  Aligned_cols=87  Identities=15%  Similarity=-0.015  Sum_probs=46.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH--------------------------------------HHHHHHHc
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD--------------------------------------RAQASIKL   49 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~--------------------------------------ra~~~~~l   49 (374)
                      .+..++-+|++-+|....++.|+-.|.+..++..                                      +|.++...
T Consensus       109 ~aai~~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~  188 (491)
T KOG2610|consen  109 KAAILWGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEEC  188 (491)
T ss_pred             hHHHhhccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHh
Confidence            3445556666666666666666666665333322                                      33444444


Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264           50 QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE   94 (374)
Q Consensus        50 ~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~   94 (374)
                      |-|++|...+++++++++.+..+...++.++...+++.++++.+.
T Consensus       189 g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~  233 (491)
T KOG2610|consen  189 GIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMY  233 (491)
T ss_pred             ccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHH
Confidence            555555555555555555555555555555555555555554444

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=95.40  E-value=0.25  Score=43.13  Aligned_cols=97  Identities=14%  Similarity=0.086  Sum_probs=73.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHH----HHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS--MSK----AYW   74 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~----a~~   74 (374)
                      .+...|+.+++.|+++.|++.|.++.......   ..+++.+..+.+-.+++.....+..+|-.+-..  +..    ...
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            46789999999999999999999988875433   456666777777789999999988888766432  222    233


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           75 RKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ..|..+...++|..|...|-.+..-.
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~~t~  143 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSLSTF  143 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccCcCC
Confidence            45778888999999998887765433

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=95.40  E-value=0.17  Score=55.89  Aligned_cols=105  Identities=12%  Similarity=0.017  Sum_probs=81.3

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHhcC
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMKLEE   85 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~lg~   85 (374)
                      ....|-+.+.|++|.++|+..++.-......|..+|..+++..+-++|...+.+|+..-|.  +.+..-..|++-|..|+
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KKF~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GD 1615 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKKFGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGD 1615 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHHhcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCC
Confidence            3445666777888888888888877777788888888888888888888888888888876  66777778888888888


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      .+.+...|+-.+.-+|.-.+++.-+..
T Consensus      1616 aeRGRtlfEgll~ayPKRtDlW~VYid 1642 (1710)
T KOG1070|consen 1616 AERGRTLFEGLLSAYPKRTDLWSVYID 1642 (1710)
T ss_pred             chhhHHHHHHHHhhCccchhHHHHHHH
Confidence            888888888888888876665554433

>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]

Probab=95.34  E-value=0.032  Score=50.15  Aligned_cols=60  Identities=27%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~   69 (374)
                      ..+.+.+|++.|.++|++||.+-|....-++.+|....+.|+++.|.+.|++.++++|.+
T Consensus         3 ~~~~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D   62 (287)
T COG4976           3 YMLAESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED   62 (287)
T ss_pred             chhcccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence            456788999999999999999999999999999999999999999999999999999864

>PRK11597 heat shock chaperone IbpB; Provisional

Probab=95.31  E-value=0.092  Score=44.08  Aligned_cols=74  Identities=11%  Similarity=0.147  Sum_probs=59.5

Q ss_pred             ccccc-cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC----------CeeeeccccccccccCceEEEEcC
Q 017264          176 HEFYQ-KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE----------EAYHFQPRLFGKIIPAKCRYEVLS  241 (374)
Q Consensus       176 ~~W~Q-t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~----------~~y~~~~~L~~~I~p~~s~~~v~~  241 (374)
                      ++=++ +++.+.|++.++|+.+++|.|++..+.|+|+....   .+          ..|.-.+.|-..|+++  +-+...
T Consensus        35 vdI~e~~~~~y~v~adlPGv~kedi~V~v~~~~LtI~ge~~~~~~~~~~~~~Er~~g~F~R~f~LP~~vd~~--~A~~~n  112 (142)
T PRK11597         35 YNIEKSDDNHYRITLALAGFRQEDLDIQLEGTRLTVKGTPEQPEKEVKWLHQGLVNQPFSLSFTLAENMEVS--GATFVN  112 (142)
T ss_pred             EEEEEcCCCEEEEEEEeCCCCHHHeEEEEECCEEEEEEEEccccCCCcEEEEEEeCcEEEEEEECCCCcccC--cCEEcC
Confidence            56666 57799999999999999999999999999987531   11          1355567788899988  477788


Q ss_pred             cEEEEEEeec
Q 017264          242 TKVEIRLAKA  251 (374)
Q Consensus       242 ~kiei~L~K~  251 (374)
                      .-+.|+|-|.
T Consensus       113 GVL~I~lPK~  122 (142)
T PRK11597        113 GLLHIDLIRN  122 (142)
T ss_pred             CEEEEEEecc
Confidence            8999999986

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.29  E-value=0.59  Score=42.67  Aligned_cols=100  Identities=21%  Similarity=0.155  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-----CCCHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-----PSMSK   71 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-----p~~~~   71 (374)
                      ..+...+..+-..++|++|-..+.+|++-..+|      +.+|-..|.....+..+.++...|++|..+-     |+-+.
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfhAAKayEqaamLake~~klsEvvdl~eKAs~lY~E~GspdtAA  111 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFHAAKAYEQAAMLAKELSKLSEVVDLYEKASELYVECGSPDTAA  111 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCCcchHH
Confidence            345666777778899999999999998765544      3556666777778899999999999998763     44444


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .-+-++--.....+.++|+..|++++.+-..
T Consensus       112 maleKAak~lenv~Pd~AlqlYqralavve~  142 (308)
T KOG1585|consen  112 MALEKAAKALENVKPDDALQLYQRALAVVEE  142 (308)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHHHhc
Confidence            4455555566777889999999998776443

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=95.25  E-value=0.11  Score=48.05  Aligned_cols=74  Identities=16%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      ..++=.+|.+.++++.|+...++.+.++|.++.-+.-+|.+|.++|.+.-|+..++..++..|+++.+......
T Consensus       184 l~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~  257 (269)
T COG2912         184 LRNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQ  257 (269)
T ss_pred             HHHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHH
Confidence            33444566777889999999999999999998888889999999999999999999989999988865444433

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=95.22  E-value=0.19  Score=38.74  Aligned_cols=65  Identities=17%  Similarity=0.103  Sum_probs=49.8

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHh
Q 017264           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE  119 (374)
Q Consensus        55 Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~~~~~~l~~  119 (374)
                      .+..++.++..+|++..+.|.+|..+...|+|++|+..|-.+++.+++.  ...+..+-.+-..++.
T Consensus         7 ~~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen    7 DIAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             cHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            4667889999999999999999999999999999999999999988765  3455555555444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=95.14  E-value=0.098  Score=50.13  Aligned_cols=95  Identities=16%  Similarity=0.007  Sum_probs=77.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CC
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------AELFADRAQASIKLQNFTEAVADANRAIELE------PS   68 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~------p~   68 (374)
                      ....|..+-..+||++|+.+..+|+.+..+-          ..+++.++.+|..+|....|.+.++.|.++.      +.
T Consensus       165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~  244 (518)
T KOG1941|consen  165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL  244 (518)
T ss_pred             hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence            4567888889999999999999999883221          4567778899999999999999999988764      23


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           69 MSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ......-+|.+|..+|+.+.|..-|+.+...
T Consensus       245 ~arc~~~~aDIyR~~gd~e~af~rYe~Am~~  275 (518)
T KOG1941|consen  245 QARCLLCFADIYRSRGDLERAFRRYEQAMGT  275 (518)
T ss_pred             HHHHHHHHHHHHHhcccHhHHHHHHHHHHHH
Confidence            4566777899999999999999999987653

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=95.13  E-value=0.31  Score=48.35  Aligned_cols=105  Identities=19%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             HhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264           13 FIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (374)
Q Consensus        13 ~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e   88 (374)
                      +..+|.+.+.+.|..+|++-|+.    +.+++..|...++..+...|...+..||...|.+- .+-.+-.+-.++++++.
T Consensus       377 le~ed~ertr~vyq~~l~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~K-lFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  377 LEAEDVERTRQVYQACLDLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDK-LFKGYIELELQLREFDR  455 (677)
T ss_pred             HHhhhHHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchh-HHHHHHHHHHHHhhHHH
Confidence            34455555555555555555543    33444444444455555555555555555554431 11122223344455555


Q ss_pred             HHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           89 AKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        89 A~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      ....|++.++..|.+-......+.++..|+
T Consensus       456 cRkLYEkfle~~Pe~c~~W~kyaElE~~Lg  485 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPENCYAWSKYAELETSLG  485 (677)
T ss_pred             HHHHHHHHHhcChHhhHHHHHHHHHHHHhh
Confidence            555555555555544444444444444433

>PLN03077 Protein ECB2; Provisional

Probab=95.11  E-value=0.22  Score=54.30  Aligned_cols=103  Identities=16%  Similarity=0.141  Sum_probs=68.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~---~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      -..+...|.+++|+.+|+...+.   .|+ ...|..+..+|.+.|++++|...++.. .+.|+ ...|-.+-.+|..-++
T Consensus       596 l~a~~~~g~v~ea~~~f~~M~~~~gi~P~-~~~y~~lv~~l~r~G~~~eA~~~~~~m-~~~pd-~~~~~aLl~ac~~~~~  672 (857)
T PLN03077        596 LCACSRSGMVTQGLEYFHSMEEKYSITPN-LKHYACVVDLLGRAGKLTEAYNFINKM-PITPD-PAVWGALLNACRIHRH  672 (857)
T ss_pred             HHHHhhcChHHHHHHHHHHHHHHhCCCCc-hHHHHHHHHHHHhCCCHHHHHHHHHHC-CCCCC-HHHHHHHHHHHHHcCC
Confidence            34566778888888888777643   333 466777778888888888888777654 24443 3445555556666677


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+.|....+++++++|++......+..+.
T Consensus       673 ~e~~e~~a~~l~~l~p~~~~~y~ll~n~y  701 (857)
T PLN03077        673 VELGELAAQHIFELDPNSVGYYILLCNLY  701 (857)
T ss_pred             hHHHHHHHHHHHhhCCCCcchHHHHHHHH
Confidence            77777777777777777766555554444

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.09  E-value=0.39  Score=43.49  Aligned_cols=95  Identities=24%  Similarity=0.226  Sum_probs=62.2

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC------CHHHHHHH
Q 017264           10 KEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIK-LQNFTEAVADANRAIELEPS------MSKAYWRK   76 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~------~~~a~~~l   76 (374)
                      .-.|+..+..+|+..+.+++++..+-      +..+..+|..|.. +.+++.||.+|++|-..-..      --++++..
T Consensus        81 ~~cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKv  160 (288)
T KOG1586|consen   81 ANCYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKV  160 (288)
T ss_pred             HHHhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHH
Confidence            33455557777777777777763322      2233445555543 47788888888877765432      23567777


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      |..-..+++|.+|+..|++..+..-++.
T Consensus       161 A~yaa~leqY~~Ai~iyeqva~~s~~n~  188 (288)
T KOG1586|consen  161 AQYAAQLEQYSKAIDIYEQVARSSLDNN  188 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence            7777888888899888888877666655

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.07  E-value=0.17  Score=46.01  Aligned_cols=94  Identities=21%  Similarity=0.270  Sum_probs=50.0

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh----C--CCCHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIEL----E--PSMSKAY   73 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l----~--p~~~~a~   73 (374)
                      ..+|-.+..+.+.+.|+++|++++..-...      .+++...+..|.++++|.+|-..+.+-..+    +  +...+++
T Consensus       114 leKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~  193 (308)
T KOG1585|consen  114 LEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAY  193 (308)
T ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHH
Confidence            344555556666666666666666652221      345555566666666666665544433222    1  2223334


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           74 WRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ...-++|..+.+|..|..||+.+.++
T Consensus       194 va~ilv~L~~~Dyv~aekc~r~~~qi  219 (308)
T KOG1585|consen  194 VAAILVYLYAHDYVQAEKCYRDCSQI  219 (308)
T ss_pred             HHHHHHHhhHHHHHHHHHHhcchhcC
Confidence            44444455555777777766665443

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.03  E-value=0.039  Score=54.61  Aligned_cols=78  Identities=13%  Similarity=0.143  Sum_probs=68.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHh---------CC---------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEI---------SP---------NSAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~---------~p---------~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p   67 (374)
                      .+.|..+|+.+.|..++.+|.+||+-         .|         ...+++++.|..|+..|+.-.|.+.|.+++....
T Consensus       287 NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh  366 (696)
T KOG2471|consen  287 NNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFH  366 (696)
T ss_pred             cCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHh
Confidence            46788899999999999999999961         11         2257899999999999999999999999999999


Q ss_pred             CCHHHHHHHHHHHHHh
Q 017264           68 SMSKAYWRKATACMKL   83 (374)
Q Consensus        68 ~~~~a~~~lg~~~~~l   83 (374)
                      .++..|+|+|.|+...
T Consensus       367 ~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  367 RNPRLWLRLAECCIMA  382 (696)
T ss_pred             cCcHHHHHHHHHHHHH
Confidence            9999999999998653

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=94.77  E-value=0.73  Score=45.58  Aligned_cols=69  Identities=14%  Similarity=0.262  Sum_probs=52.7

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh----hHHHHHHHHHHHHH
Q 017264           46 SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS----RFTNLIKECEERIA  118 (374)
Q Consensus        46 ~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~----~~~~~~~~~~~~l~  118 (374)
                      ++..|+|.++.-+..-..+++| .+.++..+|.|++...+|.+|..+|....   |++.    .++..+.-|++.+.
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP---~n~~~~dskvqKAl~lCqKh~~  544 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP---PNERMRDSKVQKALALCQKHLP  544 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC---CchhhHHHHHHHHHHHHHHhhh
Confidence            4556889999998889999999 88999999999999999999999998743   3322    24444455555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>cd06482 ACD_HspB10 Alpha crystallin domain (ACD) found in mammalian small heat shock protein (sHsp) HspB10, also known as sperm outer dense fiber protein (ODFP), and similar proteins

Probab=94.50  E-value=0.16  Score=38.82  Aligned_cols=66  Identities=18%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             cCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC------CCCe-----eeeccccccccccCceEEEEcCc-EEEE
Q 017264          181 KPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------GEEA-----YHFQPRLFGKIIPAKCRYEVLST-KVEI  246 (374)
Q Consensus       181 t~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~------~~~~-----y~~~~~L~~~I~p~~s~~~v~~~-kiei  246 (374)
                      .++.+.|++-++|+.+++|.|++..+.|+|+....      +...     |.=.+.|...|++++.+-+.... .+.|
T Consensus         6 ~~~~~~v~adlPG~~kedI~V~v~~~~L~I~ger~~~~e~~~~~er~~g~F~R~f~LP~~Vd~d~i~A~~~~~~~l~i   83 (87)
T cd06482           6 DSSNVLASVDVCGFEPDQVKVKVKDGKVQVSAERENRYDCLGSKKYSYMNICKEFSLPPGVDEKDVTYSYGLGSVVKI   83 (87)
T ss_pred             cCCEEEEEEECCCCCHHHeEEEEECCEEEEEEEEecccccCCccEEEEEEEEEEEECCCCcChHHcEEEEcCCCEEEE
Confidence            46789999999999999999999999999997431      1112     33456898999999988888777 5555

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. Human (h) HspB10 occurs exclusively in the axoneme of sperm cells and may have a cytoskeletal role.

>PF08190 PIH1: pre-RNA processing PIH1/Nop17

Probab=94.49  E-value=0.17  Score=48.55  Aligned_cols=65  Identities=25%  Similarity=0.354  Sum_probs=55.0

Q ss_pred             cCCeEEEEEEeCCC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcC--cEEEEEE
Q 017264          181 KPEEVVVTVFAKGI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLS--TKVEIRL  248 (374)
Q Consensus       181 t~~~V~i~i~~k~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~--~kiei~L  248 (374)
                      ..+.+.|.|.++++ ...++.+++.++.|.|.+...   .|.|++.|-++|+++.++-+...  ..+.|+|
T Consensus       259 ~p~~lvv~i~LP~~~s~~~i~LdV~~~~l~l~~~~~---~y~L~l~LP~~V~~~~~~Akf~~~~~~L~vtl  326 (328)
T PF08190_consen  259 SPEELVVEIELPGVESASDIDLDVSEDRLSLSSPKP---KYRLDLPLPYPVDEDNGKAKFDKKTKTLTVTL  326 (328)
T ss_pred             CCceEEEEEECCCcCccceeEEEEeCCEEEEEeCCC---ceEEEccCCCcccCCCceEEEccCCCEEEEEE
Confidence            47899999999998 569999999999999987632   69999999999999998877655  3677777

>COG2912 Uncharacterized conserved protein [Function unknown]

Probab=94.26  E-value=0.32  Score=45.06  Aligned_cols=75  Identities=17%  Similarity=0.177  Sum_probs=67.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .+.=..+...++++.|+....+.|.++|.++.-+.-||.+|.++|.+.-|+.+++..++..|+.+.+-+.++...
T Consensus       185 ~~lk~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~~~P~~~~a~~ir~~l~  259 (269)
T COG2912         185 RNLKAALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVEHCPDDPIAEMIRAQLL  259 (269)
T ss_pred             HHHHHHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHHhCCCchHHHHHHHHHH
Confidence            345567889999999999999999999999999999999999999999999999999999999988776665543

>PLN03077 Protein ECB2; Provisional

Probab=94.15  E-value=0.62  Score=50.85  Aligned_cols=103  Identities=14%  Similarity=0.087  Sum_probs=63.2

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEI--SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATACMK   82 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~--~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~   82 (374)
                      .....+...|+.++|+.+|++.++.  .|+... |..+-.++.+.|.+++|+..|+......+-  +...|.-+..+|.+
T Consensus       559 ~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T-~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r  637 (857)
T PLN03077        559 ILLTGYVAHGKGSMAVELFNRMVESGVNPDEVT-FISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGR  637 (857)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCccc-HHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Confidence            3445566777777777777776653  454333 444445666777777777777777643221  23456667777777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      .|++++|...+++. .+.|+...+...+.
T Consensus       638 ~G~~~eA~~~~~~m-~~~pd~~~~~aLl~  665 (857)
T PLN03077        638 AGKLTEAYNFINKM-PITPDPAVWGALLN  665 (857)
T ss_pred             CCCHHHHHHHHHHC-CCCCCHHHHHHHHH
Confidence            88888887777764 35555443333333

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=94.14  E-value=0.37  Score=37.27  Aligned_cols=56  Identities=20%  Similarity=0.253  Sum_probs=31.0

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~---------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      .....+||..|++.+.+.+......         ..++.++|.++...|++++|+..++.|+.+.
T Consensus         7 ~~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~A   71 (94)
T PF12862_consen    7 NALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLA   71 (94)
T ss_pred             HHHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            4456666766666665555541111         2344555556666666666666666666554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=94.12  E-value=1.5  Score=42.87  Aligned_cols=108  Identities=17%  Similarity=0.099  Sum_probs=77.4

Q ss_pred             HHHHHHHHh---ccCHHHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHc---------cCHHHHHHHHHHHHHhCCCCH--
Q 017264            6 EKKAKEAFI---DDYFELAYDLYSQAIE-ISPNSAELFADRAQASIKL---------QNFTEAVADANRAIELEPSMS--   70 (374)
Q Consensus         6 ~~~g~~~~~---~~~y~~Al~~y~~aL~-~~p~~~~~~~~ra~~~~~l---------~~~~~Al~~~~~al~l~p~~~--   70 (374)
                      +..|.++.+   .|+.+.|+..+..++. ..+.+++.+.-+|.+|-.+         ..+..|+..|.++++++|+.-  
T Consensus       183 ~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~G  262 (374)
T PF13281_consen  183 FQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSG  262 (374)
T ss_pred             HHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccch
Confidence            456777777   8999999999988544 5667789899888888443         357889999999998876310  


Q ss_pred             -------------------------------------------HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           71 -------------------------------------------KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        71 -------------------------------------------~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                                                                 ..+-.++.+..-.|+++.|..++++++.+.|..=.+.
T Consensus       263 IN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~  342 (374)
T PF13281_consen  263 INAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELE  342 (374)
T ss_pred             HHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHH
Confidence                                                       0112245556668888999999999998887655444


Q ss_pred             HHHHHH
Q 017264          108 NLIKEC  113 (374)
Q Consensus       108 ~~~~~~  113 (374)
                      ..+..+
T Consensus       343 St~~ni  348 (374)
T PF13281_consen  343 STLENI  348 (374)
T ss_pred             HHHHHH
Confidence            444433

>cd06477 ACD_HspB3_Like Alpha crystallin domain (ACD) found in mammalian HspB3, also known as heat-shock protein 27-like protein (HSPL27, 17-kDa) and similar proteins

Probab=93.88  E-value=0.45  Score=36.05  Aligned_cols=68  Identities=7%  Similarity=-0.009  Sum_probs=51.6

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CCC-----eeeeccccccccccCceEEEE-cCcEEEEE
Q 017264          180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GEE-----AYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  247 (374)
Q Consensus       180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~~-----~y~~~~~L~~~I~p~~s~~~v-~~~kiei~  247 (374)
                      .+++...|.+-++|+.++++.|++..+.|+|+....   .+.     .|.-.+.|...|+++..+-+. ...-+.|.
T Consensus         4 e~~~~~~v~~dlpG~~~edI~V~v~~~~L~I~ge~~~~~~~~~~~~r~F~R~~~LP~~Vd~~~v~A~~~~dGvL~I~   80 (83)
T cd06477           4 EGKPMFQILLDVVQFRPEDIIIQVFEGWLLIKGQHGVRMDEHGFISRSFTRQYQLPDGVEHKDLSAMLCHDGILVVE   80 (83)
T ss_pred             cCCceEEEEEEcCCCCHHHeEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcchheEEEEEcCCCEEEEE
Confidence            467889999999999999999999999999997531   111     244456788999999887776 35555554

sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. HspB3 is expressed in adult skeletal muscle, smooth muscle, and heart, and in several other fetal tissues. In muscle cells HspB3 forms an oligomeric 150 kDa complex with myotonic dystrophy protein kinase-binding protein (MKBP/ HspB2), this complex may comprise one of two independent muscle-cell specific chaperone systems. The expression of HspB3 is induced during muscle differentiation controlled by the myogenic factor MyoD. HspB3 may also interact with Hsp22 (HspB8).

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=93.83  E-value=0.45  Score=39.37  Aligned_cols=72  Identities=13%  Similarity=0.105  Sum_probs=57.6

Q ss_pred             HHHHHHHHHHhccC---HHHHHHHHHHHHH-hCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            4 DLEKKAKEAFIDDY---FELAYDLYSQAIE-ISPNS-AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         4 ~l~~~g~~~~~~~~---y~~Al~~y~~aL~-~~p~~-~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      ..|+.|-.+....+   -++.|.++...++ ..|.. -+.++++|..|+++++|+.++++++..++..|++..+.-.
T Consensus        34 s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Qa~~L  110 (149)
T KOG3364|consen   34 SQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQALEL  110 (149)
T ss_pred             HHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHHHHHH
Confidence            45677777776655   4678899999986 44443 4678889999999999999999999999999998876543

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=93.80  E-value=0.15  Score=32.24  Aligned_cols=28  Identities=21%  Similarity=0.234  Sum_probs=15.1

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      .+.++|.+|..+|++++|+..+.+++.+
T Consensus         4 ~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    4 ALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            4455555555555555555555555543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=93.68  E-value=1  Score=50.18  Aligned_cols=99  Identities=14%  Similarity=0.066  Sum_probs=91.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      -+...|..++.+.+-++|..++.+||+.-|.  +..+....|+.-++.|+.+++...|+-.+.-.|.-.+.|..+...-.
T Consensus      1566 vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~ei 1645 (1710)
T KOG1070|consen 1566 VWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEI 1645 (1710)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHH
Confidence            3567889999999999999999999999888  78899999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCC
Q 017264           82 KLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ..|+.+-....|++++.+.=.
T Consensus      1646 k~~~~~~vR~lfeRvi~l~l~ 1666 (1710)
T KOG1070|consen 1646 KHGDIKYVRDLFERVIELKLS 1666 (1710)
T ss_pred             ccCCHHHHHHHHHHHHhcCCC
Confidence            999999999999999887643

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=93.67  E-value=0.17  Score=47.50  Aligned_cols=85  Identities=13%  Similarity=0.110  Sum_probs=71.5

Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR-KATACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        25 y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~-lg~~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      |.++-..-++++.+|...+.--.+.+.|.+-...|..++..+|.+.+.|.. .+.-++..+++..+...|.++++++|++
T Consensus        96 ~~R~tnkff~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~  175 (435)
T COG5191          96 LYRSTNKFFNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRS  175 (435)
T ss_pred             eehhhhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCC
Confidence            444445567888888888877778889999999999999999999999988 5667888999999999999999999999


Q ss_pred             hhHHHH
Q 017264          104 SRFTNL  109 (374)
Q Consensus       104 ~~~~~~  109 (374)
                      +.++..
T Consensus       176 p~iw~e  181 (435)
T COG5191         176 PRIWIE  181 (435)
T ss_pred             chHHHH
Confidence            865443

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.60  E-value=0.018  Score=54.55  Aligned_cols=73  Identities=19%  Similarity=0.272  Sum_probs=63.7

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +..|.++.|++.|..+|.++|.....|-.++.++..+++...|+..|..++.++|+...-..|...++..|..
T Consensus       125 ln~G~~~~ai~~~t~ai~lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~  197 (377)
T KOG1308|consen  125 LNDGEFDTAIELFTSAIELNPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGN  197 (377)
T ss_pred             hcCcchhhhhcccccccccCCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhc
Confidence            3458899999999999999999999999999999999999999999999999999987666666655555444

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=93.57  E-value=0.34  Score=49.22  Aligned_cols=74  Identities=19%  Similarity=0.122  Sum_probs=66.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +.+.|+.+...+-...|-.++.++|.+....+..++.+|.+|+.+++...|++.+..|+.++|+++.+.-.+-.
T Consensus       645 ~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~~~~~~l~~  718 (886)
T KOG4507|consen  645 LVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCPECENSLKL  718 (886)
T ss_pred             HHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCChhhHHHHHH
Confidence            56889999999999999999999999998889999999999999999999999999999999998776554433

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=93.52  E-value=1.9  Score=41.18  Aligned_cols=118  Identities=18%  Similarity=0.134  Sum_probs=90.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C-C-------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIEL--E-P-------   67 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p----~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--~-p-------   67 (374)
                      +..+...+..+.+.|.|+.|...+.++....+    ..+.+.+..|..+-..|+..+|+..+...+..  . .       
T Consensus       146 ~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~  225 (352)
T PF02259_consen  146 AETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNA  225 (352)
T ss_pred             HHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHH
Confidence            34567889999999999999999999888642    14677888899999999999999988887761  0 0       


Q ss_pred             ------------------------CCHHHHHHHHHHHHHh------cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           68 ------------------------SMSKAYWRKATACMKL------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        68 ------------------------~~~~a~~~lg~~~~~l------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                                              ..+++++.+|.....+      +.+++++..|..+..++|.........+.....+
T Consensus       226 ~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~  305 (352)
T PF02259_consen  226 ELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKL  305 (352)
T ss_pred             HHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHH
Confidence                                    1255777888888777      8899999999999999997776555555544444


Q ss_pred             Hh
Q 017264          118 AE  119 (374)
Q Consensus       118 ~~  119 (374)
                      -.
T Consensus       306 ~~  307 (352)
T PF02259_consen  306 LE  307 (352)
T ss_pred             HH
Confidence            33

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=93.50  E-value=1  Score=43.97  Aligned_cols=79  Identities=15%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------------CCC---------------CHHHHHHHH
Q 017264           27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------------EPS---------------MSKAYWRKA   77 (374)
Q Consensus        27 ~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------------~p~---------------~~~a~~~lg   77 (374)
                      ..|..+|.+...+..++.++..+|++..|...+++||-.              +..               .-.++++..
T Consensus        31 ~ll~~~PyHidtLlqls~v~~~~gd~~~A~~lleRALf~~e~~~~~~F~~~~~~~~~g~~rL~~~~~eNR~fflal~r~i  110 (360)
T PF04910_consen   31 NLLQKNPYHIDTLLQLSEVYRQQGDHAQANDLLERALFAFERAFHPSFSPFRSNLTSGNCRLDYRRPENRQFFLALFRYI  110 (360)
T ss_pred             HHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccCccccCCccccchHHHHHHHHHH
Confidence            345678999999999999999999999999998888722              111               134678889


Q ss_pred             HHHHHhcCHHHHHHHHHHHHhcCCC-Chh
Q 017264           78 TACMKLEEYETAKVALEKGASLAPG-DSR  105 (374)
Q Consensus        78 ~~~~~lg~~~eA~~~~~~a~~l~p~-~~~  105 (374)
                      ..+.+.|-+..|+++++-.+.++|. |+-
T Consensus       111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~  139 (360)
T PF04910_consen  111 QSLGRRGCWRTALEWCKLLLSLDPDEDPL  139 (360)
T ss_pred             HHHHhcCcHHHHHHHHHHHHhcCCCCCcc
Confidence            9999999999999999999999999 664

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=93.26  E-value=1.1  Score=45.60  Aligned_cols=102  Identities=19%  Similarity=0.051  Sum_probs=81.9

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH-HHHHHhCCCCHHHHHHH------HHHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA-NRAIELEPSMSKAYWRK------ATACM   81 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~-~~al~l~p~~~~a~~~l------g~~~~   81 (374)
                      ...+..-++...+......++..+|.++.++.+++.+....|....++..+ +.+....|++..+...+      |..+.
T Consensus        74 si~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~  153 (620)
T COG3914          74 SILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLALADISEIAEWLSPDNAEFLGHLIRFYQLGRYLK  153 (620)
T ss_pred             HhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCcchHHHHhhHHHHHHHHHHHH
Confidence            445556677778888899999999999999999999988887766666655 45888889877665554      88888


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~  110 (374)
                      .+|+..++..+++++..+.|.++.+...+
T Consensus       154 ~l~~~~~~~~~l~~~~d~~p~~~~~~~~~  182 (620)
T COG3914         154 LLGRTAEAELALERAVDLLPKYPRVLGAL  182 (620)
T ss_pred             HhccHHHHHHHHHHHHHhhhhhhhhHhHH
Confidence            89999999999999999999987654443

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.16  E-value=2.8  Score=39.18  Aligned_cols=96  Identities=16%  Similarity=-0.041  Sum_probs=73.9

Q ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHcc-------CHHHHHHHHHHHHHhCCCCHH
Q 017264            4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNS-AELFADRAQASIKLQ-------NFTEAVADANRAIELEPSMSK   71 (374)
Q Consensus         4 ~l~~~g~~~~~----~~~y~~Al~~y~~aL~~~p~~-~~~~~~ra~~~~~l~-------~~~~Al~~~~~al~l~p~~~~   71 (374)
                      .++..|..++.    ..|+.+|+.+|.+|....-.. ..+.+.++.+|..-.       +...|+..+.++....  +..
T Consensus       111 a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~--~~~  188 (292)
T COG0790         111 ALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELG--NPD  188 (292)
T ss_pred             HHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhc--CHH
Confidence            45667777776    559999999999999985443 344777888876631       2336888888888777  888


Q ss_pred             HHHHHHHHHHH----hcCHHHHHHHHHHHHhcCC
Q 017264           72 AYWRKATACMK----LEEYETAKVALEKGASLAP  101 (374)
Q Consensus        72 a~~~lg~~~~~----lg~~~eA~~~~~~a~~l~p  101 (374)
                      +.+++|.+|..    ..++.+|..+|.++.+...
T Consensus       189 a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~  222 (292)
T COG0790         189 AQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD  222 (292)
T ss_pred             HHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence            99999988865    4588999999999988776

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=93.09  E-value=1.2  Score=47.13  Aligned_cols=96  Identities=16%  Similarity=0.099  Sum_probs=72.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHH----------HHhCCCCH----------HHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQA----------IEISPNSA----------ELFADRAQASIKLQNFTEAVADANRAI   63 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~a----------L~~~p~~~----------~~~~~ra~~~~~l~~~~~Al~~~~~al   63 (374)
                      .+.+.|..+-.++|...||++|.++          |..+|...          .+|.--|.-+...|+.+.|+..|..|-
T Consensus       860 Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~  939 (1416)
T KOG3617|consen  860 TYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAK  939 (1416)
T ss_pred             hHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhh
Confidence            4677888888899999999999763          33344443          344445666667799999999988664


Q ss_pred             Hh---------------------CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           64 EL---------------------EPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        64 ~l---------------------~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ..                     ...+..+.|.+|..|.+.|++.+|+..|.++..+
T Consensus       940 D~fs~VrI~C~qGk~~kAa~iA~esgd~AAcYhlaR~YEn~g~v~~Av~FfTrAqaf  996 (1416)
T KOG3617|consen  940 DYFSMVRIKCIQGKTDKAARIAEESGDKAACYHLARMYENDGDVVKAVKFFTRAQAF  996 (1416)
T ss_pred             hhhhheeeEeeccCchHHHHHHHhcccHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            32                     2346778999999999999999999999987544

>PF12862 Apc5: Anaphase-promoting complex subunit 5

Probab=92.87  E-value=0.5  Score=36.54  Aligned_cols=56  Identities=23%  Similarity=0.333  Sum_probs=45.9

Q ss_pred             HHHccCHHHHHHHHHHHHHhCCC---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           46 SIKLQNFTEAVADANRAIELEPS---------MSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        46 ~~~l~~~~~Al~~~~~al~l~p~---------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ..+.++|.+|+..+.+.+.....         ..-+++.+|.++...|++++|+..++.++++..
T Consensus         8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~Ar   72 (94)
T PF12862_consen    8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRLAR   72 (94)
T ss_pred             HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence            35789999999988888865431         245788899999999999999999999998754

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=92.83  E-value=0.41  Score=40.18  Aligned_cols=48  Identities=19%  Similarity=0.239  Sum_probs=29.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ   50 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~   50 (374)
                      +.++..+..++..|+|.-|+++.+.++..+|++..+...++.+|.+++
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666665554

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=92.70  E-value=1.7  Score=41.50  Aligned_cols=98  Identities=26%  Similarity=0.137  Sum_probs=74.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHh-CC-C-------------------------C-------HHHHHHHHHHHHHc-
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SP-N-------------------------S-------AELFADRAQASIKL-   49 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~-~p-~-------------------------~-------~~~~~~ra~~~~~l-   49 (374)
                      .+..+..+...|+..+|+..+...+.. .. .                         .       +.++..+|.-...+ 
T Consensus       187 ~~e~akllw~~g~~~~Ai~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~  266 (352)
T PF02259_consen  187 FLEYAKLLWAQGEQEEAIQKLRELLKCRLSKNIDSISNAELKSGLLESLEVISSTNLDKESKELKAKAFLLLAKWLDELY  266 (352)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhccccccHHHHhhccccccccccccchhhhhHHHHHHHHHHHHHHHHhhc
Confidence            456788999999999999999888881 11 0                         1       23444555555555 


Q ss_pred             -----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH-----------------HHHHHHHHHHHhcCCC
Q 017264           50 -----QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY-----------------ETAKVALEKGASLAPG  102 (374)
Q Consensus        50 -----~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~-----------------~eA~~~~~~a~~l~p~  102 (374)
                           +.+++++..|..|+.++|...++|+.+|..+..+-+.                 ..|+.+|-+++.+.+.
T Consensus       267 ~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ai~~y~~al~~~~~  341 (352)
T PF02259_consen  267 SKLSSESSDEILKYYKEATKLDPSWEKAWHSWALFNDKLLESDPREKEESSQEDRSEYLEQAIEGYLKALSLGSK  341 (352)
T ss_pred             cccccccHHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHhhhhcccccchhHHHHHHHHHHHHHHHHHhhCCC
Confidence                 7788889999999999999999999999988765222                 3477888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=92.61  E-value=2.3  Score=39.32  Aligned_cols=102  Identities=11%  Similarity=0.036  Sum_probs=84.7

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH-HHHH
Q 017264           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE-TAKV   91 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l-~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~-eA~~   91 (374)
                      +...-+.|+.+...+|.++|.+...+..|=.|+..+ .+..+-+.++...++-+|.+-.+|..+-.+..-+|++. .-+.
T Consensus        55 ~~E~S~RAl~LT~d~i~lNpAnYTVW~yRr~iL~~l~~dL~~El~~l~eI~e~npKNYQvWHHRr~ive~l~d~s~rELe  134 (318)
T KOG0530|consen   55 KNEKSPRALQLTEDAIRLNPANYTVWQYRRVILRHLMSDLNKELEYLDEIIEDNPKNYQVWHHRRVIVELLGDPSFRELE  134 (318)
T ss_pred             ccccCHHHHHHHHHHHHhCcccchHHHHHHHHHHHhHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHhcCcccchHH
Confidence            445568899999999999999999998888888776 46778889999999999999999999999999999988 8888


Q ss_pred             HHHHHHhcCCCChhHHHHHHHHHH
Q 017264           92 ALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        92 ~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .....+..+..|-.+.+..+.|-.
T Consensus       135 f~~~~l~~DaKNYHaWshRqW~~r  158 (318)
T KOG0530|consen  135 FTKLMLDDDAKNYHAWSHRQWVLR  158 (318)
T ss_pred             HHHHHHhccccchhhhHHHHHHHH
Confidence            899998887776655554444443

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=92.54  E-value=1.8  Score=42.29  Aligned_cols=97  Identities=12%  Similarity=-0.035  Sum_probs=73.8

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHH---ccCHHHHHHHHHHHHH-hCCCCHHHHHHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIK---LQNFTEAVADANRAIE-LEPSMSKAYWRKAT   78 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~----~p~~~~~~~~ra~~~~~---l~~~~~Al~~~~~al~-l~p~~~~a~~~lg~   78 (374)
                      +.-..|-...+|+.=+.+.+..-.+    .++...+.+.+|.++.+   .|+.++|++.+..++. ..+.+++.+..+|.
T Consensus       146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR  225 (374)
T PF13281_consen  146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR  225 (374)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3444566778888888887665444    34456778888999999   8999999999988554 45678888888888


Q ss_pred             HHHH---------hcCHHHHHHHHHHHHhcCCCC
Q 017264           79 ACMK---------LEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        79 ~~~~---------lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      +|..         ....+.|+.+|.++.+++|+.
T Consensus       226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~  259 (374)
T PF13281_consen  226 IYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDY  259 (374)
T ss_pred             HHHHHHHHcCccchHHHHHHHHHHHHHHcCCccc
Confidence            8854         234689999999999998653

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=92.50  E-value=0.31  Score=30.79  Aligned_cols=30  Identities=30%  Similarity=0.369  Sum_probs=26.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      +..+.+.|..++..|+|++|+.++.+++..
T Consensus         2 a~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    2 ASALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            567889999999999999999999999886

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=92.41  E-value=2.1  Score=36.59  Aligned_cols=84  Identities=14%  Similarity=0.118  Sum_probs=71.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ..++.+..+-.+.++.+++...+.-.-.+.|..+..-+.-|.++...|+|.+|+..|+.+..-.|..+.....++.|...
T Consensus        11 ~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~   90 (160)
T PF09613_consen   11 GGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYA   90 (160)
T ss_pred             HHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHH
Confidence            45566666777788999999988888889999999999999999999999999999999988888888888888888765


Q ss_pred             HHhh
Q 017264          117 IAEE  120 (374)
Q Consensus       117 l~~~  120 (374)
                      ++..
T Consensus        91 ~~D~   94 (160)
T PF09613_consen   91 LGDP   94 (160)
T ss_pred             cCCh
Confidence            5443

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.15  E-value=1.1  Score=42.89  Aligned_cols=101  Identities=16%  Similarity=0.060  Sum_probs=77.2

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHh
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKL   83 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~l   83 (374)
                      .+.-+..-|-|++|.+..+++|++++.+..+....|.++...+++.++++...+--..-.+    ...-|...|.++..-
T Consensus       181 yaFgL~E~g~y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~  260 (491)
T KOG2610|consen  181 YAFGLEECGIYDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG  260 (491)
T ss_pred             HHhhHHHhccchhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence            4556678899999999999999999999999999999999999999999876544322211    122345568888888


Q ss_pred             cCHHHHHHHHHHHH--hcCCCChhHHH
Q 017264           84 EEYETAKVALEKGA--SLAPGDSRFTN  108 (374)
Q Consensus        84 g~~~eA~~~~~~a~--~l~p~~~~~~~  108 (374)
                      ++|+.|+..|.+-+  ++.-++...+.
T Consensus       261 aeye~aleIyD~ei~k~l~k~Da~a~~  287 (491)
T KOG2610|consen  261 AEYEKALEIYDREIWKRLEKDDAVARD  287 (491)
T ss_pred             cchhHHHHHHHHHHHHHhhccchhhhh
Confidence            99999999998643  55555554333

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.11  E-value=1.9  Score=42.08  Aligned_cols=90  Identities=19%  Similarity=0.212  Sum_probs=71.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHH--HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQ--ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~--~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .-.+...+..|+|+.|.+-|+..+. +|.. ..+-.||.  .-.++|..+.|+++++.+....|..+.++.-.=...+..
T Consensus       124 lLeAQaal~eG~~~~Ar~kfeAMl~-dPEt-RllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~  201 (531)
T COG3898         124 LLEAQAALLEGDYEDARKKFEAMLD-DPET-RLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAA  201 (531)
T ss_pred             HHHHHHHHhcCchHHHHHHHHHHhc-ChHH-HHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhc
Confidence            3467788899999999999976543 5553 22333432  235679999999999999999999998888888888999


Q ss_pred             cCHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGA   97 (374)
Q Consensus        84 g~~~eA~~~~~~a~   97 (374)
                      |+++.|+...+...
T Consensus       202 gdWd~AlkLvd~~~  215 (531)
T COG3898         202 GDWDGALKLVDAQR  215 (531)
T ss_pred             CChHHHHHHHHHHH
Confidence            99999999887643

>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT

Probab=92.10  E-value=2.9  Score=34.02  Aligned_cols=83  Identities=13%  Similarity=0.072  Sum_probs=58.1

Q ss_pred             HHHHHHHHHHHH--ccCHHHHHHHHHHHHHhCCC------------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--
Q 017264           37 ELFADRAQASIK--LQNFTEAVADANRAIELEPS------------MSKAYWRKATACMKLEEYETAKVALEKGASLA--  100 (374)
Q Consensus        37 ~~~~~ra~~~~~--l~~~~~Al~~~~~al~l~p~------------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~--  100 (374)
                      .+|..++..-.+  -|.|++|...|.+|......            ++-+|-.|+.++..+|+|++++....+++...  
T Consensus         8 ~aY~aLs~ae~ql~~g~~~eAa~s~r~AM~~srtiP~eEaFDh~GFDA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNR   87 (144)
T PF12968_consen    8 MAYMALSDAERQLQDGAYEEAAASCRKAMEVSRTIPAEEAFDHDGFDAFCHAGLSGALAGLGRYDECLQSADRALRYFNR   87 (144)
T ss_dssp             HHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHTTS-TTS---HHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhccCChHhhcccccHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhh
Confidence            455666555444  38899999999999987643            24467788999999999999998888877642  


Q ss_pred             ---CCChhHHHHHHHHHHHHHh
Q 017264          101 ---PGDSRFTNLIKECEERIAE  119 (374)
Q Consensus       101 ---p~~~~~~~~~~~~~~~l~~  119 (374)
                         -+......|++-+..+-..
T Consensus        88 RGEL~qdeGklWIaaVfsra~A  109 (144)
T PF12968_consen   88 RGELHQDEGKLWIAAVFSRAVA  109 (144)
T ss_dssp             H--TTSTHHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHHHHHHHH
Confidence               2334578888777665433

The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=91.97  E-value=2  Score=40.20  Aligned_cols=64  Identities=22%  Similarity=0.177  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ..++..++..+...++++.++..+++.+.++|-+-.+|.++=.+|+..|+...|+..|.+..++
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            4677788888888999999999999999999999999999999999999999999999987764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=91.96  E-value=2.5  Score=43.63  Aligned_cols=110  Identities=18%  Similarity=0.155  Sum_probs=84.5

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHHHHHHHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACMK   82 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-----~~~~a~~~lg~~~~~   82 (374)
                      .+...-.-|-++..-..|++.|.+.=..+....|.|..+....-|++|.+.|++.+.|.+     +....|+..++.-|.
T Consensus       483 y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~ryg  562 (835)
T KOG2047|consen  483 YADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYG  562 (835)
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhc
Confidence            344455567778888899999999888899999999999999999999999999999875     244566777888777


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCh--hHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDS--RFTNLIKECEERI  117 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~--~~~~~~~~~~~~l  117 (374)
                      -...+.|...|++|+...|..-  .+...+++++.+.
T Consensus       563 g~klEraRdLFEqaL~~Cpp~~aKtiyLlYA~lEEe~  599 (835)
T KOG2047|consen  563 GTKLERARDLFEQALDGCPPEHAKTIYLLYAKLEEEH  599 (835)
T ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHh
Confidence            7888999999999999888322  2333345554443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=91.91  E-value=4.2  Score=39.73  Aligned_cols=97  Identities=19%  Similarity=0.142  Sum_probs=68.5

Q ss_pred             HHHhccCHHHHHHHHHHHHHh---CCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264           11 EAFIDDYFELAYDLYSQAIEI---SPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~---~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+..|+|+.||++.+.....   .++-     ..++...+..+.. -+...|..++..+++|.|+..-+-..-+.+|+.
T Consensus       197 ~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ld-adp~~Ar~~A~~a~KL~pdlvPaav~AAralf~  275 (531)
T COG3898         197 ARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLD-ADPASARDDALEANKLAPDLVPAAVVAARALFR  275 (531)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhc-CChHHHHHHHHHHhhcCCccchHHHHHHHHHHh
Confidence            456777888888877665543   2221     1222223332222 346678888889999999999899999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      .|+..++-..++.+.+..|. +.+...
T Consensus       276 d~~~rKg~~ilE~aWK~ePH-P~ia~l  301 (531)
T COG3898         276 DGNLRKGSKILETAWKAEPH-PDIALL  301 (531)
T ss_pred             ccchhhhhhHHHHHHhcCCC-hHHHHH
Confidence            99999999999999999986 433333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.75  E-value=2.5  Score=43.84  Aligned_cols=81  Identities=15%  Similarity=0.064  Sum_probs=41.8

Q ss_pred             cCHHHHHHHHHHHHHh-----CCCCHHHHHHHHHHHHHc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-
Q 017264           16 DYFELAYDLYSQAIEI-----SPNSAELFADRAQASIKL----Q-NFTEAVADANRAIELEPSMSKAYWRKATACMKLE-   84 (374)
Q Consensus        16 ~~y~~Al~~y~~aL~~-----~p~~~~~~~~ra~~~~~l----~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg-   84 (374)
                      +|.+.|+.+|..+...     .-.++.+.+.+|.||.+.    . ++..|+..+.++..++  ++.+.+++|.++..-. 
T Consensus       263 ~d~e~a~~~l~~aa~~~~~~a~~~~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~  340 (552)
T KOG1550|consen  263 QDLESAIEYLKLAAESFKKAATKGLPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTK  340 (552)
T ss_pred             ccHHHHHHHHHHHHHHHHHHHhhcCCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCc
Confidence            4556666666655540     111333455566666553    2 4555666665555554  3345566666555433 


Q ss_pred             --CHHHHHHHHHHHHh
Q 017264           85 --EYETAKVALEKGAS   98 (374)
Q Consensus        85 --~~~eA~~~~~~a~~   98 (374)
                        ++..|..+|..|..
T Consensus       341 ~~d~~~A~~yy~~Aa~  356 (552)
T KOG1550|consen  341 ERDYRRAFEYYSLAAK  356 (552)
T ss_pred             cccHHHHHHHHHHHHH
Confidence              44566666655543

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.74  E-value=6.6  Score=36.73  Aligned_cols=100  Identities=13%  Similarity=0.040  Sum_probs=70.0

Q ss_pred             hHHHHHHHHHHHhcc-CHHHHHHHHHHHHHh----CCCC----------HHHHHHHHHHHHHccCHHH---HHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEI----SPNS----------AELFADRAQASIKLQNFTE---AVADANRAI   63 (374)
Q Consensus         2 a~~l~~~g~~~~~~~-~y~~Al~~y~~aL~~----~p~~----------~~~~~~ra~~~~~l~~~~~---Al~~~~~al   63 (374)
                      ++.+++.|..++..+ +|..|+..+++|+++    ....          ...+..++.+|...+.++.   |+...+.+-
T Consensus        35 a~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~  114 (278)
T PF08631_consen   35 ARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLE  114 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHH
Confidence            567889999999999 999999999999988    2211          3566778888888877654   344444444


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ...|+.+..++-.=.++...++.+++...+.+.+..-.
T Consensus       115 ~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~~  152 (278)
T PF08631_consen  115 SEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSVD  152 (278)
T ss_pred             HhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhcc
Confidence            44577666663333344447888888888888776543

It is also involved in sporulation [].

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=91.73  E-value=3  Score=43.24  Aligned_cols=91  Identities=16%  Similarity=0.046  Sum_probs=71.5

Q ss_pred             HHHHHHHHhc----c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            6 EKKAKEAFID----D-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         6 ~~~g~~~~~~----~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~---~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      ...|..+++.    . |+..|+.+|.++-...  ++.+.+.+|.||..-.   ++..|..+|..|....  +..+++++|
T Consensus       292 ~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g--~~~a~~~lg~~~~~g~~~~d~~~A~~yy~~Aa~~G--~~~A~~~la  367 (552)
T KOG1550|consen  292 YGLGRLYLQGLGVEKIDYEKALKLYTKAAELG--NPDAQYLLGVLYETGTKERDYRRAFEYYSLAAKAG--HILAIYRLA  367 (552)
T ss_pred             cHHHHHHhcCCCCccccHHHHHHHHHHHHhcC--CchHHHHHHHHHHcCCccccHHHHHHHHHHHHHcC--ChHHHHHHH
Confidence            3567777764    3 7899999999998864  4466677888887654   5788999998887665  778899999


Q ss_pred             HHHHH----hcCHHHHHHHHHHHHhcC
Q 017264           78 TACMK----LEEYETAKVALEKGASLA  100 (374)
Q Consensus        78 ~~~~~----lg~~~eA~~~~~~a~~l~  100 (374)
                      +||..    ..+...|..+|.++.+..
T Consensus       368 ~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  368 LCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             HHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            99875    457889999999998877

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=91.73  E-value=0.97  Score=44.76  Aligned_cols=77  Identities=16%  Similarity=0.139  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .....|..+|..|+|..+.-+-.-..+..| ++.+|.-+|.|++...+|.+|..++...= .+.+..++.-.+|.++++
T Consensus       464 n~LaDAEyLysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP-~n~~~~dskvqKAl~lCq  540 (549)
T PF07079_consen  464 NFLADAEYLYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP-PNERMRDSKVQKALALCQ  540 (549)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC-CchhhHHHHHHHHHHHHH
Confidence            345678899999999999999988899999 79999999999999999999999774321 122334455555555443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG4814 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.43  E-value=0.8  Score=47.06  Aligned_cols=72  Identities=13%  Similarity=0.132  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      ++-+-|.-+++.++|..+++.|...++.-|      .+.+.+..++.||..+.+.+.|+++++.|-+.+|.+.-.+..
T Consensus       356 iLWn~A~~~F~~~~Y~~s~~~y~~Sl~~i~~D~~~~~FaK~qR~l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~  433 (872)
T KOG4814|consen  356 LLWNTAKKLFKMEKYVVSIRFYKLSLKDIISDNYSDRFAKIQRALQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLL  433 (872)
T ss_pred             HHHHhhHHHHHHHHHHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHH
Confidence            344567778899999999999999998655      357888899999999999999999999999999988754443

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=90.97  E-value=4.9  Score=41.66  Aligned_cols=118  Identities=20%  Similarity=0.149  Sum_probs=90.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------------SAELFADRAQASIKLQNFTEAVADANRAI   63 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~------------------~~~~~~~ra~~~~~l~~~~~Al~~~~~al   63 (374)
                      +..+.+-|..-+...+++.|+.+..+|+..-..                  +..++...+.....+|-++.....|++.|
T Consensus       425 a~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdrii  504 (835)
T KOG2047|consen  425 AEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRII  504 (835)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence            445667778888899999999999988876211                  13455555666666788888899999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .|---.+....++|..+.....+++|...|++++.+.+=-...-.|..-+.+-+.+
T Consensus       505 dLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~r  560 (835)
T KOG2047|consen  505 DLRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKR  560 (835)
T ss_pred             HHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHH
Confidence            99888888999999999999999999999999999987555555555555444443

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=90.91  E-value=4.3  Score=38.90  Aligned_cols=83  Identities=13%  Similarity=0.116  Sum_probs=65.3

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccC------------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           23 DLYSQAIEISPNSAELFADRAQASIKLQN------------FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~------------~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      ..|++.++.+|++..+++.+......+-.            .+..+..+++||+.+|++...++.+=.++....+-+...
T Consensus         6 ~el~~~v~~~P~di~~Wl~li~~Qd~~~~~~~~~~~~~~a~~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~   85 (321)
T PF08424_consen    6 AELNRRVRENPHDIEAWLELIEFQDELFRLQSSSKAERRALAERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLA   85 (321)
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHH
Confidence            45788888999999988888766554422            456678889999999988888777777777788888888


Q ss_pred             HHHHHHHhcCCCChh
Q 017264           91 VALEKGASLAPGDSR  105 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~  105 (374)
                      .-+++++..+|++..
T Consensus        86 ~~we~~l~~~~~~~~  100 (321)
T PF08424_consen   86 KKWEELLFKNPGSPE  100 (321)
T ss_pred             HHHHHHHHHCCCChH
Confidence            889999988887664

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=90.83  E-value=1.1  Score=41.52  Aligned_cols=62  Identities=16%  Similarity=0.022  Sum_probs=37.9

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           55 AVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        55 Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      |+.+|.+|+.+.|.++..|..+|+++...|+.-.|+.+|-+++-..--.+.....+..+-.+
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            56677777777777777777777777777777777777777664433334455555554444

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=90.60  E-value=5.3  Score=35.31  Aligned_cols=59  Identities=19%  Similarity=0.164  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      ..+.+|..+...+++++|+..++.++..-.+   -.-+-+|+|.+++.+|.+++|+..+...
T Consensus        91 aaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~  152 (207)
T COG2976          91 AALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTI  152 (207)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcc
Confidence            4455778888899999999999998855432   2346789999999999999999998764

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=90.33  E-value=0.48  Score=30.20  Aligned_cols=29  Identities=21%  Similarity=0.232  Sum_probs=21.9

Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ++|.++|.+....++|.+|+..|++++.+
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i   30 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEI   30 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            46777788888888888888888777654

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>PF05455 GvpH: GvpH; InterPro: IPR008633 This family consists of archaeal GvpH proteins which are thought to be involved in gas vesicle synthesis []

Probab=90.28  E-value=1.8  Score=37.49  Aligned_cols=74  Identities=19%  Similarity=0.231  Sum_probs=55.4

Q ss_pred             cccccCC-eEEEEEEeCCCCCCc-eEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          177 EFYQKPE-EVVVTVFAKGIPAKN-VTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       177 ~W~Qt~~-~V~i~i~~k~~~~~~-v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      +=.+.++ .++|.--++||..++ +.|++..+...|.+...+  .|.-.|.|-.++ ++.-...+...-+||.|++.+.
T Consensus        95 dtre~dDge~~VvAdLPGVs~dd~idV~l~~d~~~L~i~~~~--~~~krv~L~~~~-~e~~~~t~nNgILEIri~~~~~  170 (177)
T PF05455_consen   95 DTRERDDGELVVVADLPGVSDDDAIDVTLDDDEGALTIRVGE--KYLKRVALPWPD-PEITSATFNNGILEIRIRRTEE  170 (177)
T ss_pred             eeEecCCCcEEEEEeCCCCCcccceeeEeecCCceEEEecCC--ceEeeEecCCCc-cceeeEEEeCceEEEEEeecCC
Confidence            3444555 688888899998877 888888776666665333  365678888885 6766788899999999999764

>cd06480 ACD_HspB8_like Alpha-crystallin domain (ACD) found in mammalian 21

Probab=90.18  E-value=2  Score=33.20  Aligned_cols=68  Identities=15%  Similarity=0.095  Sum_probs=51.3

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C---CeeeeccccccccccCceEEEEc-CcEEEEE
Q 017264          180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E---EAYHFQPRLFGKIIPAKCRYEVL-STKVEIR  247 (374)
Q Consensus       180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~---~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~  247 (374)
                      -++++-.|.|-+.|..++++.|++..+.|.|+.....     |   ..|.-.+.|...|+++..+-.+. ...+.|.
T Consensus        12 ~~~~~f~v~ldv~gF~pEDL~Vkv~~~~L~V~Gkh~~~~~e~g~~~r~F~R~~~LP~~Vd~~~v~s~l~~dGvL~Ie   88 (91)
T cd06480          12 NSSEPWKVCVNVHSFKPEELTVKTKDGFVEVSGKHEEQQKEGGIVSKNFTKKIQLPPEVDPVTVFASLSPEGLLIIE   88 (91)
T ss_pred             CCCCcEEEEEEeCCCCHHHcEEEEECCEEEEEEEECcccCCCCEEEEEEEEEEECCCCCCchhEEEEeCCCCeEEEE
Confidence            3456678899999999999999999999999874321     1   12445667999999998888877 4456554

6 KDa small heat shock protein (sHsp) HspB8, also denoted as Hsp22 in humans, and similar proteins. sHsps are molecular chaperones that suppress protein aggregation and protect against cell stress, and are generally active as large oligomers consisting of multiple subunits. A chaperone complex formed of HspB8 and Bag3 stimulates degradation of protein complexes by macroautophagy. HspB8 also forms complexes with Hsp27 (HspB1), MKBP (HspB2), HspB3, alphaB-crystallin (HspB5), Hsp20 (HspB6), and cvHsp (HspB7). These latter interactions may depend on phosphorylation of the respective partner sHsp. HspB8 may participate in the regulation of cell proliferation, cardiac hypertrophy, apoptosis, and carcinogenesis. Point mutations in HspB8 have been correlated with the development of several congenital neurological diseases, including Charcot Marie tooth disease and distal motor neuropathy type II.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=90.17  E-value=2.7  Score=42.07  Aligned_cols=96  Identities=14%  Similarity=0.050  Sum_probs=74.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e   88 (374)
                      -......||.-.|-.....+|+..|..+.....++..+..+|.|+.|++++.-+-..-..-..+..-+-..++.+|++++
T Consensus       296 i~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~  375 (831)
T PRK15180        296 ITKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWRE  375 (831)
T ss_pred             HHHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHH
Confidence            34567789999999999999999999999889999999999999999998876655443333444445567889999999


Q ss_pred             HHHHHHHHHhcCCCCh
Q 017264           89 AKVALEKGASLAPGDS  104 (374)
Q Consensus        89 A~~~~~~a~~l~p~~~  104 (374)
                      |.......+.-.-.++
T Consensus       376 a~s~a~~~l~~eie~~  391 (831)
T PRK15180        376 ALSTAEMMLSNEIEDE  391 (831)
T ss_pred             HHHHHHHHhccccCCh
Confidence            9887776654443333

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=90.04  E-value=0.96  Score=28.40  Aligned_cols=21  Identities=14%  Similarity=0.069  Sum_probs=11.0

Q ss_pred             HHHHHHHHHHHhcCHHHHHHH
Q 017264           72 AYWRKATACMKLEEYETAKVA   92 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~   92 (374)
                      .++.+|..++..|+|++|+..
T Consensus         3 ~~y~~a~~~y~~~ky~~A~~~   23 (36)
T PF07720_consen    3 YLYGLAYNFYQKGKYDEAIHF   23 (36)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHH
Confidence            445555555555555555555

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=89.56  E-value=3.9  Score=39.91  Aligned_cols=99  Identities=13%  Similarity=0.099  Sum_probs=75.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCC-----CCHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE-LFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRK   76 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~-~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-----~~~~a~~~l   76 (374)
                      .++.....+.++|-|..|++...-.+.++|. ++. +++.+-...++.++|+--+..++.......     ..+...|.+
T Consensus       105 al~r~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a~S~  184 (360)
T PF04910_consen  105 ALFRYIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFAFSI  184 (360)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHHHHH
Confidence            4567778889999999999999999999999 653 333344444566888777776666554211     245677899


Q ss_pred             HHHHHHhcCH---------------HHHHHHHHHHHhcCCC
Q 017264           77 ATACMKLEEY---------------ETAKVALEKGASLAPG  102 (374)
Q Consensus        77 g~~~~~lg~~---------------~eA~~~~~~a~~l~p~  102 (374)
                      +.+++.+++-               +.|...+.+|+...|.
T Consensus       185 aLA~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~fP~  225 (360)
T PF04910_consen  185 ALAYFRLEKEESSQSSAQSGRSENSESADEALQKAILRFPW  225 (360)
T ss_pred             HHHHHHhcCccccccccccccccchhHHHHHHHHHHHHhHH
Confidence            9999999998               8999999999988873

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=89.55  E-value=0.62  Score=29.69  Aligned_cols=30  Identities=23%  Similarity=0.520  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      ..|..+|.+-+..++|..|+.+|.+++.+.
T Consensus         2 dv~~~Lgeisle~e~f~qA~~D~~~aL~i~   31 (38)
T PF10516_consen    2 DVYDLLGEISLENENFEQAIEDYEKALEIQ   31 (38)
T ss_pred             cHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            356677777777788888888888887653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].

>KOG0546 consensus HSP90 co-chaperone CPR7/Cyclophilin [Posttranslational modification, protein turnover, chaperones]

Probab=89.41  E-value=0.26  Score=47.10  Aligned_cols=78  Identities=18%  Similarity=0.036  Sum_probs=65.9

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +.+...++.++|..|+.....+++.++....+++.|+..|..+.++++|++++..+....|++....-.+...-....
T Consensus       280 n~~~~~lk~~~~~~a~~~~~~~~~~~~s~tka~~Rr~~~~~~~~~~~~a~~~~~~a~~~~p~d~~i~~~~~~~~~~~~  357 (372)
T KOG0546|consen  280 NLAAVGLKVKGRGGARFRTNEALRDERSKTKAHYRRGQAYKLLKNYDEALEDLKKAKQKAPNDKAIEEELENVRQKKK  357 (372)
T ss_pred             chHHhcccccCCCcceeccccccccChhhCcHHHHHHhHHHhhhchhhhHHHHHHhhccCcchHHHHHHHHHhhhHHH
Confidence            456777888999999999999999999999999999999999999999999999999999998776555544433333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.35  E-value=2  Score=38.74  Aligned_cols=68  Identities=19%  Similarity=0.131  Sum_probs=49.4

Q ss_pred             HhccCHHHHHHHHHHHHHhCCC--C----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHH
Q 017264           13 FIDDYFELAYDLYSQAIEISPN--S----AELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATAC   80 (374)
Q Consensus        13 ~~~~~y~~Al~~y~~aL~~~p~--~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-~a~~~lg~~~   80 (374)
                      ....=+..|++.|.+++.....  .    ..+++.+|..+.++|++++|++.|.+++....... ..+..+|.-+
T Consensus       136 ~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s~~~~l~~~AR~~  210 (214)
T PF09986_consen  136 NEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKASKEPKLKDMARDQ  210 (214)
T ss_pred             HHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCCCcHHHHHHHHHH
Confidence            3333467899999999887433  1    46777899999999999999999999997654332 3455555433

>PF10373 EST1_DNA_bind: Est1 DNA/RNA binding domain; InterPro: IPR018834 Est1 is a protein which recruits or activates telomerase at the site of polymerisation [, ]

Probab=89.09  E-value=4.9  Score=37.04  Aligned_cols=62  Identities=18%  Similarity=0.118  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264           21 AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus        21 Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      |+.+|.+|+.+.|.+...|..+|..+...|+.-.|+-+|-+++....-++.+.-++...+..
T Consensus         1 A~~~Y~~A~~l~P~~G~p~nQLAvl~~~~~~~l~avy~y~Rsl~~~~Pf~~A~~NL~~lf~~   62 (278)
T PF10373_consen    1 AERYYRKAIRLLPSNGNPYNQLAVLASYQGDDLDAVYYYIRSLAVRIPFPSARENLQKLFEK   62 (278)
T ss_dssp             HHHHHHHHHHH-TTBSHHHHHHHHHHHHTT-HHHHHHHHHHHHSSSB--HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHhCCCCCCcccchhhhhccccchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            78899999999999999999999999999999999999999996654456677777666666

This is the DNA/RNA binding domain of EST1 []. ; PDB: 1YA0_B.

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=88.94  E-value=2.6  Score=39.55  Aligned_cols=62  Identities=13%  Similarity=0.100  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      .+...+..+...++++.++.++++.+..+|.+-.+|..+-.+|++.|+...|+..|+++-.+
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~  216 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKT  216 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHH
Confidence            45667888999999999999999999999999999999999999999999999999877664

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=88.89  E-value=0.57  Score=26.87  Aligned_cols=23  Identities=22%  Similarity=0.108  Sum_probs=13.6

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHH
Q 017264           72 AYWRKATACMKLEEYETAKVALE   94 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~   94 (374)
                      +++.+|.++..+|++++|...++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHh
Confidence            45556666666666666665543

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones []

Probab=88.63  E-value=1.6  Score=27.37  Aligned_cols=29  Identities=14%  Similarity=0.012  Sum_probs=13.9

Q ss_pred             HHHHHHHHHHccCHHHHHHH--HHHHHHhCC
Q 017264           39 FADRAQASIKLQNFTEAVAD--ANRAIELEP   67 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~--~~~al~l~p   67 (374)
                      ++.+|..+...|++++|+..  |..+..+++
T Consensus         4 ~y~~a~~~y~~~ky~~A~~~~~y~~l~~ld~   34 (36)
T PF07720_consen    4 LYGLAYNFYQKGKYDEAIHFFQYAFLCALDK   34 (36)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHHHhcc
Confidence            44455555555555555555  324444443

; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.

>PHA02537 M terminase endonuclease subunit; Provisional

Probab=88.28  E-value=9.4  Score=34.76  Aligned_cols=108  Identities=17%  Similarity=0.076  Sum_probs=64.8

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCH------------HHHHHHHHHHHHccC-HHHH-HHHHHHHHHhC--CCCH--HHH
Q 017264           12 AFIDDYFELAYDLYSQAIEISPNSA------------ELFADRAQASIKLQN-FTEA-VADANRAIELE--PSMS--KAY   73 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~p~~~------------~~~~~ra~~~~~l~~-~~~A-l~~~~~al~l~--p~~~--~a~   73 (374)
                      +|..|+|+.|++....||+.+-.-|            +-...-|......|+ ++-. +..+.....-.  |+..  +.|
T Consensus        93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~vaeev~~~A~~~~~ag~~~e~~~~~~~~~l~~~~dmpd~vrAKl~  172 (230)
T PHA02537         93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFVAEEVANAALKAASAGESVEPYFLRVFLDLTTEWDMPDEVRAKLY  172 (230)
T ss_pred             eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHHHHHHHHHHHHHHHcCCCCChHHHHHHHHHHhcCCCChHHHHHHH
Confidence            4678999999999999999832221            222223333334443 1111 11222222111  3333  334


Q ss_pred             HHHHHHHH---------HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           74 WRKATACM---------KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        74 ~~lg~~~~---------~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      -..|..+.         ..++...|+.+|++++.++|. .-+...+.++.++|+..
T Consensus       173 K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k-~GVK~~i~~l~~~lr~~  227 (230)
T PHA02537        173 KAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK-CGVKKDIERLERRLKAL  227 (230)
T ss_pred             HHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC-CChHHHHHHHHHHHhhc
Confidence            44566553         456788999999999999975 45778888888888754

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=88.07  E-value=12  Score=34.95  Aligned_cols=81  Identities=17%  Similarity=0.082  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---------
Q 017264           18 FELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---------   84 (374)
Q Consensus        18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg---------   84 (374)
                      ...|+..|.++....  +..+.+.+|.+|..    ..++.+|..+|.+|.....  ..+++.++ +++..|         
T Consensus       171 ~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~  245 (292)
T COG0790         171 DKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFL  245 (292)
T ss_pred             HHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhc
Confidence            348999999988876  67888999988866    3589999999999999987  88999999 777666         


Q ss_pred             ------CHHHHHHHHHHHHhcCCCC
Q 017264           85 ------EYETAKVALEKGASLAPGD  103 (374)
Q Consensus        85 ------~~~eA~~~~~~a~~l~p~~  103 (374)
                            +...|...+..+..+....
T Consensus       246 ~~~~~~~~~~a~~~~~~~~~~~~~~  270 (292)
T COG0790         246 TAAKEEDKKQALEWLQKACELGFDN  270 (292)
T ss_pred             ccccCCCHHHHHHHHHHHHHcCChh
Confidence                  7777888888777665543

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=87.96  E-value=6.5  Score=33.22  Aligned_cols=83  Identities=13%  Similarity=0.053  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+.....+-....+++++...+...--+.|+.++..+.-|.++...|+|.+|+..|....+-.+..+-.+..++.|...+
T Consensus        12 gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al   91 (153)
T TIGR02561        12 GLIEVLMYALRSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAK   91 (153)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhc
Confidence            34445555566888898888888877899999999999999999999999999999998877777676777777776655


Q ss_pred             Hhh
Q 017264          118 AEE  120 (374)
Q Consensus       118 ~~~  120 (374)
                      +..
T Consensus        92 ~Dp   94 (153)
T TIGR02561        92 GDA   94 (153)
T ss_pred             CCh
Confidence            443

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=87.92  E-value=3  Score=37.60  Aligned_cols=59  Identities=22%  Similarity=0.164  Sum_probs=28.0

Q ss_pred             HHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264           10 KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus        10 ~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      ..+.+.+..++||.....-++..|.+......+-..|.-.|+|++|+..++.+-++.|+
T Consensus         9 seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~   67 (273)
T COG4455           9 SELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQ   67 (273)
T ss_pred             HHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcc
Confidence            34444444555555544444444444444444444444445555555544444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=87.58  E-value=4.4  Score=38.07  Aligned_cols=61  Identities=23%  Similarity=0.201  Sum_probs=53.5

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      .+.-+.-+......+++.+|...+..++...|.+.++.+.++.||...|+.+.|...|...
T Consensus       134 ~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         134 EEEALAEAKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             HHHHHHHhhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            3445556777788999999999999999999999999999999999999999998887753

>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)

Probab=87.48  E-value=8.8  Score=37.76  Aligned_cols=62  Identities=15%  Similarity=0.154  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH--HHHHHHHHHHHH--ccCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA--ELFADRAQASIK--LQNFTEAVADANRAIE   64 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~--~~~~~ra~~~~~--l~~~~~Al~~~~~al~   64 (374)
                      +....++..+|..++|..|...+..++..-|.+.  ..+..++.+|..  .-+|.+|...++..+.
T Consensus       132 ~~~~~~a~~l~n~~~y~aA~~~l~~l~~rl~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~  197 (379)
T PF09670_consen  132 DREWRRAKELFNRYDYGAAARILEELLRRLPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK  197 (379)
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4557889999999999999999999988633333  456666666654  5678888888876664

>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.34  E-value=4.9  Score=39.93  Aligned_cols=101  Identities=19%  Similarity=0.211  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--------HHH--HHHHHHHH--------HHcc----CHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--------AEL--FADRAQAS--------IKLQ----NFTEAVADANR   61 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--------~~~--~~~ra~~~--------~~l~----~~~~Al~~~~~   61 (374)
                      ...+.|..++..|.|.+|+..|..+|..-|-.        .++  ++.++.-|        .+..    ..++..+.++.
T Consensus       206 ~~Lk~gyk~~t~gKF~eA~~~Fr~iL~~i~l~vv~~~~E~~e~~eli~icrEYilgl~iEl~Rr~l~~~~~~~~kR~lEL  285 (422)
T PF06957_consen  206 ERLKEGYKLFTAGKFEEAIEIFRSILHSIPLLVVESREEEDEAKELIEICREYILGLSIELERRELPKDPVEDQKRNLEL  285 (422)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHC--BSSCHHHHHHHHHHHHHHHHHHHHHHHHHHCTS-TTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHhheeeecCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchhhHHHHHHH
Confidence            34668999999999999999999999873322        111  11122111        1111    12233333343


Q ss_pred             HHH-----hCCCCHHHHHHHHHH-HHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           62 AIE-----LEPSMSKAYWRKATA-CMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        62 al~-----l~p~~~~a~~~lg~~-~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      |.-     |.|.+.-.-+|.|.. .|+.++|..|....++.+++.|...
T Consensus       286 AAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~~  334 (422)
T PF06957_consen  286 AAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSPE  334 (422)
T ss_dssp             HHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SCH
T ss_pred             HHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCHH
Confidence            332     223333334455553 4789999999999999999999765

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=86.92  E-value=3.8  Score=40.49  Aligned_cols=97  Identities=12%  Similarity=0.122  Sum_probs=62.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~---------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      +......+.-.|||..|++.+.- |.++         +.+...++..|.||+.+++|.+|++.|...+..-......+..
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~-idl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~yi~r~k~~~~~  203 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLEN-IDLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILLYIQRTKNQYHQ  203 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhc-cCcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcc
Confidence            45567788899999999998754 2222         2235678889999999999999999998888432211111111


Q ss_pred             HHHHH-HHhcCHHHHHHHHHHHHhcCCC
Q 017264           76 KATAC-MKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        76 lg~~~-~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ...-+ .-.+..++....+.-++.+.|.
T Consensus       204 ~~~q~d~i~K~~eqMyaLlAic~~l~p~  231 (404)
T PF10255_consen  204 RSYQYDQINKKNEQMYALLAICLSLCPQ  231 (404)
T ss_pred             ccchhhHHHhHHHHHHHHHHHHHHhCCC
Confidence            11111 1234445556666667777774

>cd02682 MIT_AAA_Arch MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=86.80  E-value=3  Score=30.93  Aligned_cols=30  Identities=30%  Similarity=0.220  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      |..+..+|..+-+.|+|.+||.+|+++++.
T Consensus         6 A~~~a~~AVe~D~~gr~~eAi~~Y~~aIe~   35 (75)
T cd02682           6 ARKYAINAVKAEKEGNAEDAITNYKKAIEV   35 (75)
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            455666777777777777777666665554

This sub-family of MIT domains is found in mostly archaebacterial AAA-ATPases. The molecular function of the MIT domain is unclear.

>PRK13184 pknD serine/threonine-protein kinase; Reviewed

Probab=86.72  E-value=5.6  Score=43.65  Aligned_cols=89  Identities=15%  Similarity=0.112  Sum_probs=65.3

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC-----HHHHH
Q 017264           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-----YETAK   90 (374)
Q Consensus        16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~-----~~eA~   90 (374)
                      ..|.+|+.-|++ |.-.|..+.-|...|.+|.++|+|.+-+..+..|++.-|+++..-+..-.+.+++.+     ...|.
T Consensus       533 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  611 (932)
T PRK13184        533 RDFTQALSEFSY-LHGGVGAPLEYLGKALVYQRLGEYNEEIKSLLLALKRYSQHPEISRLRDHLVYRLHESLYKHRREAL  611 (932)
T ss_pred             HHHHHHHHHHHH-hcCCCCCchHHHhHHHHHHHhhhHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHH
Confidence            457888888866 444677778889999999999999999999999999998876644433333333322     24566


Q ss_pred             HHHHHHHhcCCCChh
Q 017264           91 VALEKGASLAPGDSR  105 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~  105 (374)
                      ...--++...|....
T Consensus       612 ~~~~~~~~~~~~~~~  626 (932)
T PRK13184        612 VFMLLALWIAPEKIS  626 (932)
T ss_pred             HHHHHHHHhCccccc
Confidence            777778888887654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.42  E-value=6  Score=35.18  Aligned_cols=71  Identities=23%  Similarity=0.128  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHHHHHHHhcCHHHHH
Q 017264           19 ELAYDLYSQAIEI-SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        19 ~~Al~~y~~aL~~-~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      +.|+..|-++-.. .=+++++.+.+|..|. ..+..+|++.+.+++++...    +++.+..++.+++.+|+++.|-
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY  198 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY  198 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence            4555555432222 1244777777776665 45678888888888877542    5777888888888888887764

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=86.19  E-value=2  Score=47.69  Aligned_cols=98  Identities=23%  Similarity=0.209  Sum_probs=82.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------   65 (374)
                      ++.+...+..+...+++++|+..-.+|+-.        .|+....|.+++...+..++...|+..+.++..+        
T Consensus       973 ~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~ 1052 (1236)
T KOG1839|consen  973 ASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLAYGNLALYEFAVKNLSGALKSLNRALKLKLLSSGED 1052 (1236)
T ss_pred             HHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHHhhHHHHHHHhccCccchhhhHHHHHHhhccccCCC
Confidence            567788999999999999999998887665        3455778999999889999999999999888876        


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      .|.-.....+++.++..+++++.|+.+++.|...
T Consensus      1053 hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a~ 1086 (1236)
T KOG1839|consen 1053 HPPTALSFINLELLLLGVEEADTALRYLESALAK 1086 (1236)
T ss_pred             CCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence            3455556678999999999999999999999874

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=86.03  E-value=6.7  Score=39.50  Aligned_cols=65  Identities=14%  Similarity=0.196  Sum_probs=53.5

Q ss_pred             HHHHh-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHH
Q 017264           10 KEAFI-DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus        10 ~~~~~-~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      ..+.+ .+.|-+--..|.++|..+|+++.+|..-|.=.+..+. .+.|.+.+.++|+.+|+.+..|.
T Consensus       112 i~f~kk~~~~~~v~ki~~~~l~~Hp~~~dLWI~aA~wefe~n~ni~saRalflrgLR~npdsp~Lw~  178 (568)
T KOG2396|consen  112 IAFCKKKKTYGEVKKIFAAMLAKHPNNPDLWIYAAKWEFEINLNIESARALFLRGLRFNPDSPKLWK  178 (568)
T ss_pred             HHHHHHhcchhHHHHHHHHHHHhCCCCchhHHhhhhhHHhhccchHHHHHHHHHHhhcCCCChHHHH
Confidence            34444 4449999999999999999999999988876666654 99999999999999999876543

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=85.93  E-value=3.5  Score=43.08  Aligned_cols=82  Identities=15%  Similarity=0.018  Sum_probs=58.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      .++..+.|..+.....|++|.++|.+.        ....+.+.||+++..|++    ++.+.+.-|.+.+.+-.+|.++.
T Consensus       796 e~A~r~ig~~fa~~~~We~A~~yY~~~--------~~~e~~~ecly~le~f~~----LE~la~~Lpe~s~llp~~a~mf~  863 (1189)
T KOG2041|consen  796 EDAFRNIGETFAEMMEWEEAAKYYSYC--------GDTENQIECLYRLELFGE----LEVLARTLPEDSELLPVMADMFT  863 (1189)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhc--------cchHhHHHHHHHHHhhhh----HHHHHHhcCcccchHHHHHHHHH
Confidence            345677788888888888888888662        123456677777777765    34444555777777778888888


Q ss_pred             HhcCHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEK   95 (374)
Q Consensus        82 ~lg~~~eA~~~~~~   95 (374)
                      ..|.-++|+.+|-+
T Consensus       864 svGMC~qAV~a~Lr  877 (1189)
T KOG2041|consen  864 SVGMCDQAVEAYLR  877 (1189)
T ss_pred             hhchHHHHHHHHHh
Confidence            88888888887765

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=85.87  E-value=13  Score=35.65  Aligned_cols=81  Identities=11%  Similarity=0.079  Sum_probs=61.9

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---HHHhcCHHHHHHHHH
Q 017264           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA---CMKLEEYETAKVALE   94 (374)
Q Consensus        18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~---~~~lg~~~eA~~~~~   94 (374)
                      .+.-+.+|.+||+.+|++..++..+-.+..+...-+....-+++++..+|++...|..+-..   .+..-.+..-...|.
T Consensus        47 ~E~klsilerAL~~np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   47 AERKLSILERALKHNPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            46778899999999999999999888888888888888999999999999987776654322   222334556666666


Q ss_pred             HHHh
Q 017264           95 KGAS   98 (374)
Q Consensus        95 ~a~~   98 (374)
                      ++++
T Consensus       127 ~~l~  130 (321)
T PF08424_consen  127 KCLR  130 (321)
T ss_pred             HHHH
Confidence            5553

>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function

Probab=85.76  E-value=6  Score=31.62  Aligned_cols=67  Identities=13%  Similarity=0.066  Sum_probs=51.8

Q ss_pred             HHHHHHHccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHhcC-----------HHHHHHHHHHHHhcCCCChhHH
Q 017264           42 RAQASIKLQNFTEAVADANRAIELEPSMS---KAYWRKATACMKLEE-----------YETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        42 ra~~~~~l~~~~~Al~~~~~al~l~p~~~---~a~~~lg~~~~~lg~-----------~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +|..+++.|++-+|++..+..+..+++..   -.+..-|.+++.+..           .-.|++||.++..+.|......
T Consensus         2 ~A~~~~~rGnhiKAL~iied~i~~h~~~~~~~~lh~~QG~if~~lA~~ten~d~k~~yLl~sve~~s~a~~Lsp~~A~~L   81 (111)
T PF04781_consen    2 KAKDYFARGNHIKALEIIEDLISRHGEDESSWLLHRLQGTIFYKLAKKTENPDVKFRYLLGSVECFSRAVELSPDSAHSL   81 (111)
T ss_pred             hHHHHHHccCHHHHHHHHHHHHHHccCCCchHHHHHHHhHHHHHHHHhccCchHHHHHHHHhHHHHHHHhccChhHHHHH
Confidence            57778899999999999999999887665   445556777766543           3478999999999999875433


Q ss_pred             H
Q 017264          108 N  108 (374)
Q Consensus       108 ~  108 (374)
                      .
T Consensus        82 ~   82 (111)
T PF04781_consen   82 F   82 (111)
T ss_pred             H
Confidence            3

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.61  E-value=1  Score=25.75  Aligned_cols=24  Identities=17%  Similarity=-0.090  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADAN   60 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~   60 (374)
                      .+++.+|.+|..+|++++|...++
T Consensus         2 ~a~~~la~~~~~~G~~~eA~~~l~   25 (26)
T PF07721_consen    2 RARLALARALLAQGDPDEAERLLR   25 (26)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHh
Confidence            345667777777777777776554

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=85.45  E-value=19  Score=35.41  Aligned_cols=108  Identities=14%  Similarity=0.102  Sum_probs=65.6

Q ss_pred             HHHHHHhccCHH-HHHHHHHHHHHhCCCCHHHHHHHHHHHHHc------------cCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            8 KAKEAFIDDYFE-LAYDLYSQAIEISPNSAELFADRAQASIKL------------QNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         8 ~g~~~~~~~~y~-~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l------------~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      +-...-..|.|+ +++++-.+.+..+|....++..|=.++...            .-+++-+.....+++.+|+.-.+|+
T Consensus        34 ~i~~~r~~~~yd~e~l~lt~~ll~~npe~~t~wN~Rr~~~~~r~~~~~~~~~ek~~~ld~eL~~~~~~L~~npksY~aW~  113 (421)
T KOG0529|consen   34 IIQKKREAKEYDEEHLELTSELLEKNPEFYTVWNYRRLIIEERLTRAQLEPLEKQALLDEELKYVESALKVNPKSYGAWH  113 (421)
T ss_pred             HHHHHHhccccchHHHHHHHHHHhhCchhhhhhhhHHHHHHHhhhhhcCCHHHHHHhhHHHHHHHHHHHHhCchhHHHHH
Confidence            333444555554 366666667777777766666554444322            2344556666677777777777777


Q ss_pred             HHHHHHHHhcC--HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           75 RKATACMKLEE--YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        75 ~lg~~~~~lg~--~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+.-++.+.+.  +..-++.++++++++|.|........-+..
T Consensus       114 hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~  156 (421)
T KOG0529|consen  114 HRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVE  156 (421)
T ss_pred             HHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHH
Confidence            77777765554  466677777777777777655444444433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=85.41  E-value=20  Score=33.48  Aligned_cols=96  Identities=20%  Similarity=0.201  Sum_probs=67.8

Q ss_pred             HHhccCHHHHHHHHHHHHHhC-CCC-------HHHHHHHHHHHHHcc-CHHHHHHHHHHHHHh----CC---C-------
Q 017264           12 AFIDDYFELAYDLYSQAIEIS-PNS-------AELFADRAQASIKLQ-NFTEAVADANRAIEL----EP---S-------   68 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~-p~~-------~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l----~p---~-------   68 (374)
                      +..+|+++.|..+|.++-... ..+       +..+++.|...+..+ +++.|...+++|+.+    ..   .       
T Consensus         3 A~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el   82 (278)
T PF08631_consen    3 AWKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL   82 (278)
T ss_pred             chhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence            467899999999999987654 222       456777788888889 999999999999987    32   1       


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHH---HHHHHHhcCCCChhHH
Q 017264           69 MSKAYWRKATACMKLEEYETAKV---ALEKGASLAPGDSRFT  107 (374)
Q Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~---~~~~a~~l~p~~~~~~  107 (374)
                      ...++..++.+|...+.++....   .+..+..-.|+.+.+.
T Consensus        83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~  124 (278)
T PF08631_consen   83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVF  124 (278)
T ss_pred             HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHH
Confidence            13456678888888888764444   3334444456655544

It is also involved in sporulation [].

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=85.24  E-value=1.9  Score=40.82  Aligned_cols=69  Identities=9%  Similarity=0.174  Sum_probs=57.0

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH-HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD-RAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~-ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      .-++...+.|.|.+--..|.++|..+|.++++|.. -+.-|...+++..+...+.++++++|..+..|+.
T Consensus       112 ~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~e  181 (435)
T COG5191         112 QYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIE  181 (435)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHH
Confidence            34555567778888889999999999999998887 3455667799999999999999999998876654

>KOG2561 consensus Adaptor protein NUB1, contains UBA domain [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=85.13  E-value=3.4  Score=40.81  Aligned_cols=98  Identities=21%  Similarity=0.175  Sum_probs=61.6

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----------CCCCHHHHHHHHHHHHHccCH----------HHHHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----------SPNSAELFADRAQASIKLQNF----------TEAVADA   59 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----------~p~~~~~~~~ra~~~~~l~~~----------~~Al~~~   59 (374)
                      |+--+...|.+++..+.|.+|+..+-.|=+.           --+.+.+-...-.||+++++.          ..|...|
T Consensus       162 mglg~hekaRa~m~re~y~eAl~~LleADe~F~~Cd~klLe~VDNyallnLDIVWCYfrLknitcL~DAe~RL~ra~kgf  241 (568)
T KOG2561|consen  162 MGLGLHEKARAAMEREMYSEALLVLLEADESFSLCDSKLLELVDNYALLNLDIVWCYFRLKNITCLPDAEVRLVRARKGF  241 (568)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHhhhHHHHHhhcchhhhhcchhheehhhcccccCChHHHHHHHHHHhh
Confidence            4455778999999999999999877554333           222233334456788887543          2233333


Q ss_pred             HHHH--------HhC-CCCH------HHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264           60 NRAI--------ELE-PSMS------KAYWRKATACMKLEEYETAKVALEKGAS   98 (374)
Q Consensus        60 ~~al--------~l~-p~~~------~a~~~lg~~~~~lg~~~eA~~~~~~a~~   98 (374)
                      .++.        .+. +..+      ..++.-|+..|+.|+-++|.++|+.+..
T Consensus       242 ~~syGenl~Rl~~lKg~~spEraL~lRL~LLQGV~~yHqg~~deAye~le~a~~  295 (568)
T KOG2561|consen  242 ERSYGENLSRLRSLKGGQSPERALILRLELLQGVVAYHQGQRDEAYEALESAHA  295 (568)
T ss_pred             hhhhhhhhHhhhhccCCCChhHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            3222        111 2222      2333459999999999999999998643

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=85.00  E-value=22  Score=36.53  Aligned_cols=105  Identities=14%  Similarity=0.029  Sum_probs=88.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHh
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-PSMSKAYWRKATACMKL   83 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-p~~~~a~~~lg~~~~~l   83 (374)
                      +..-.......|++.....+|.+++--...-.++|++.+.-....|+..-|-..+.++++.. +..+..++..+...-..
T Consensus       300 w~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e~~  379 (577)
T KOG1258|consen  300 WRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEESN  379 (577)
T ss_pred             HHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHHhh
Confidence            44455566789999999999999999888888999999998888899998888888888875 66778888899999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      |++..|...|+++.+-.|+.-.+-..
T Consensus       380 ~n~~~A~~~lq~i~~e~pg~v~~~l~  405 (577)
T KOG1258|consen  380 GNFDDAKVILQRIESEYPGLVEVVLR  405 (577)
T ss_pred             ccHHHHHHHHHHHHhhCCchhhhHHH
Confidence            99999999999998776776554333

>KOG0686 consensus COP9 signalosome, subunit CSN1 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=84.93  E-value=6.8  Score=38.42  Aligned_cols=94  Identities=16%  Similarity=0.131  Sum_probs=70.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC----C----CCHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELE----P----SMSKA   72 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~----p----~~~~a   72 (374)
                      .+...|.-|+..|+++.|+..|.++-......   ...+.+.-.+-+-+++|..-+.+..+|...-    .    -.+..
T Consensus       152 a~~Dl~dhy~~cG~l~~Alr~YsR~RdYCTs~khvInm~ln~i~VSI~~~nw~hv~sy~~~A~st~~~~~~~~q~v~~kl  231 (466)
T KOG0686|consen  152 ALEDLGDHYLDCGQLDNALRCYSRARDYCTSAKHVINMCLNLILVSIYMGNWGHVLSYISKAESTPDANENLAQEVPAKL  231 (466)
T ss_pred             HHHHHHHHHHHhccHHHHHhhhhhhhhhhcchHHHHHHHHHHHHHHHhhcchhhhhhHHHHHHhCchhhhhHHHhcCcch
Confidence            45678889999999999999999976664433   3455666666666899998888888877652    1    13456


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           73 YWRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      ....|.+++.++.|..|..+|-.+.
T Consensus       232 ~C~agLa~L~lkkyk~aa~~fL~~~  256 (466)
T KOG0686|consen  232 KCAAGLANLLLKKYKSAAKYFLLAE  256 (466)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            6778999999999999999887654

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=84.56  E-value=8.7  Score=38.62  Aligned_cols=88  Identities=15%  Similarity=0.072  Sum_probs=52.7

Q ss_pred             HHHHHHhccCHHHHHHHHH--HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH-------HHHHHHhC-----------C
Q 017264            8 KAKEAFIDDYFELAYDLYS--QAIEISPNSAELFADRAQASIKLQNFTEAVAD-------ANRAIELE-----------P   67 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~--~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~-------~~~al~l~-----------p   67 (374)
                      +-..+..+++|++++.+..  +.+..-|  ...+...+..+.+.|.++.|++.       |+.|++++           -
T Consensus       267 ~fk~av~~~d~~~v~~~i~~~~ll~~i~--~~~~~~i~~fL~~~G~~e~AL~~~~D~~~rFeLAl~lg~L~~A~~~a~~~  344 (443)
T PF04053_consen  267 EFKTAVLRGDFEEVLRMIAASNLLPNIP--KDQGQSIARFLEKKGYPELALQFVTDPDHRFELALQLGNLDIALEIAKEL  344 (443)
T ss_dssp             HHHHHHHTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HHHHHHHHHHCT-HHHHHHHCCCC
T ss_pred             HHHHHHHcCChhhhhhhhhhhhhcccCC--hhHHHHHHHHHHHCCCHHHHHhhcCChHHHhHHHHhcCCHHHHHHHHHhc
Confidence            3455667788888776664  2221222  23355556666666766666542       33344332           2


Q ss_pred             CCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           68 SMSKAYWRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        68 ~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      +....|-++|......|+++-|..||+++-
T Consensus       345 ~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~  374 (443)
T PF04053_consen  345 DDPEKWKQLGDEALRQGNIELAEECYQKAK  374 (443)
T ss_dssp             STHHHHHHHHHHHHHTTBHHHHHHHHHHCT
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc
Confidence            467899999999999999999999999864

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>COG3914 Spy Predicted O-linked N-acetylglucosamine transferase, SPINDLY family [Posttranslational modification, protein turnover, chaperones]

Probab=84.32  E-value=14  Score=38.07  Aligned_cols=98  Identities=16%  Similarity=0.076  Sum_probs=77.3

Q ss_pred             HhccCHHH-HHHHHHHHHHhCCCCHHHHHH--HHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 017264           13 FIDDYFEL-AYDLYSQAIEISPNSAELFAD--RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA   89 (374)
Q Consensus        13 ~~~~~y~~-Al~~y~~aL~~~p~~~~~~~~--ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA   89 (374)
                      +..++.+. |+..|...+..++.++.++..  |+..+..++....+...+..++..+|.+..++.++|.++...|..-.+
T Consensus        41 l~~~~~~~~~~~a~~~~~~~~~~~~~llla~~lsi~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~L~~ale~~~~~~~~  120 (620)
T COG3914          41 LNAEGLQALAIYALLLGIAINDVNPELLLAAFLSILLAPLADSTLAFLAKRIPLSVNPENCPAVQNLAAALELDGLQFLA  120 (620)
T ss_pred             hcccCchhHHHHHHHccCccCCCCHHHHHHHHHHhhccccccchhHHHHHhhhHhcCcccchHHHHHHHHHHHhhhHHHH
Confidence            33344443 677777777788888876544  477777889998899999999999999999999999999888887777


Q ss_pred             HHHHHH-HHhcCCCChhHHHHH
Q 017264           90 KVALEK-GASLAPGDSRFTNLI  110 (374)
Q Consensus        90 ~~~~~~-a~~l~p~~~~~~~~~  110 (374)
                      ...+.. +....|.+..+...+
T Consensus       121 ~~~~~~~a~~~~~~~~~~~~~~  142 (620)
T COG3914         121 LADISEIAEWLSPDNAEFLGHL  142 (620)
T ss_pred             HHHHHHHHHhcCcchHHHHhhH
Confidence            766655 888999988776666

>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]

Probab=84.16  E-value=19  Score=35.42  Aligned_cols=88  Identities=10%  Similarity=0.073  Sum_probs=57.9

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh--HHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIEL----EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIK  111 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l----~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~--~~~~~~  111 (374)
                      +.+.+-.+|+..+.|+.|-....++.--    +...+..+|.+|.+..-.++|..|..+|-+|++..|.+..  +.+...
T Consensus       211 LiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkapq~~alGf~q~v~  290 (493)
T KOG2581|consen  211 LINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAPQHAALGFRQQVN  290 (493)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCcchhhhhHHHHHH
Confidence            3344455666667777776655554411    1235678888999999999999999999999999998543  333333


Q ss_pred             HHHHHHHhhhcccC
Q 017264          112 ECEERIAEETGELQ  125 (374)
Q Consensus       112 ~~~~~l~~~~~~~~  125 (374)
                      +|.--..-..++.|
T Consensus       291 k~~ivv~ll~geiP  304 (493)
T KOG2581|consen  291 KLMIVVELLLGEIP  304 (493)
T ss_pred             HHHHHHHHHcCCCc
Confidence            33333344455554

>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 []

Probab=83.96  E-value=2.2  Score=42.11  Aligned_cols=59  Identities=14%  Similarity=0.167  Sum_probs=45.8

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264           39 FADRAQASIKLQNFTEAVADANRAIELE---------PSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~---------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~   98 (374)
                      ++.+..+|.-+|+|..|+..++.. .++         +.+...+|..|.+|..+++|.+|+..|..++-
T Consensus       125 ligLlRvh~LLGDY~~Alk~l~~i-dl~~~~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL~  192 (404)
T PF10255_consen  125 LIGLLRVHCLLGDYYQALKVLENI-DLNKKGLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQILL  192 (404)
T ss_pred             HHHHHHHHHhccCHHHHHHHhhcc-CcccchhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444566777899999999876532 222         34567889999999999999999999998764

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=83.47  E-value=38  Score=35.51  Aligned_cols=106  Identities=20%  Similarity=0.119  Sum_probs=73.1

Q ss_pred             HHHHHHHHHHH-hccCHHHHHHHHHHHHHhCCCC--H----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHH
Q 017264            3 TDLEKKAKEAF-IDDYFELAYDLYSQAIEISPNS--A----ELFADRAQASIKLQNFTEAVADANRAIELEPS----MSK   71 (374)
Q Consensus         3 ~~l~~~g~~~~-~~~~y~~Al~~y~~aL~~~p~~--~----~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~   71 (374)
                      ...+..|..++ .-.+++.|..++.+++.+...+  .    .+.+-++.+|.+.+... |+..++++++....    ...
T Consensus        60 ~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~  138 (608)
T PF10345_consen   60 RVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWY  138 (608)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHH
Confidence            34567788777 7789999999999998886432  2    23334577777777666 99999999987654    334


Q ss_pred             HHHHHHHH-HH-HhcCHHHHHHHHHHHHhcC--CCChhHHHH
Q 017264           72 AYWRKATA-CM-KLEEYETAKVALEKGASLA--PGDSRFTNL  109 (374)
Q Consensus        72 a~~~lg~~-~~-~lg~~~eA~~~~~~a~~l~--p~~~~~~~~  109 (374)
                      .+|++-.+ +. ..+++..|+..++.+..+.  ..++.+...
T Consensus       139 ~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~  180 (608)
T PF10345_consen  139 YAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVL  180 (608)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHH
Confidence            44454322 22 2379999999999988776  355544333

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=83.01  E-value=13  Score=32.29  Aligned_cols=65  Identities=18%  Similarity=0.183  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ..++..+|..|.+.|++++|+..|.++....-.   ..+.++++-.+.+..+++.....++.++..+-
T Consensus        36 r~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~  103 (177)
T PF10602_consen   36 RMALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLI  103 (177)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            467889999999999999999999998876543   35678888899999999999999999887654

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG2300 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.76  E-value=28  Score=35.18  Aligned_cols=91  Identities=12%  Similarity=0.102  Sum_probs=67.8

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCC-CHH--HHHHHHHHHHHccCHHHHHHHHHHHH-HhCCC----------CHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN-SAE--LFADRAQASIKLQNFTEAVADANRAI-ELEPS----------MSK   71 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-~~~--~~~~ra~~~~~l~~~~~Al~~~~~al-~l~p~----------~~~   71 (374)
                      .-.|.....-+.|+.|..+|..|+++-.. +..  +-.++|..|++.++-+.    +-+++ .+.|.          ...
T Consensus       371 ~LlGlys~sv~~~enAe~hf~~a~k~t~~~dl~a~~nlnlAi~YL~~~~~ed----~y~~ld~i~p~nt~s~ssq~l~a~  446 (629)
T KOG2300|consen  371 MLLGLYSHSVNCYENAEFHFIEATKLTESIDLQAFCNLNLAISYLRIGDAED----LYKALDLIGPLNTNSLSSQRLEAS  446 (629)
T ss_pred             HHHhhHhhhcchHHHHHHHHHHHHHhhhHHHHHHHHHHhHHHHHHHhccHHH----HHHHHHhcCCCCCCcchHHHHHHH
Confidence            44677777788899999999999998433 333  44567899999776443    33333 34443          255


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ++|..|...|..+++.+|...+.+.++..
T Consensus       447 ~~~v~glfaf~qn~lnEaK~~l~e~Lkma  475 (629)
T KOG2300|consen  447 ILYVYGLFAFKQNDLNEAKRFLRETLKMA  475 (629)
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhc
Confidence            78889999999999999999999999877

>KOG2422 consensus Uncharacterized conserved protein [Function unknown]

Probab=82.64  E-value=29  Score=35.77  Aligned_cols=93  Identities=19%  Similarity=0.096  Sum_probs=67.2

Q ss_pred             ccCHHHHHHHHHHHHHh------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCC---------
Q 017264           15 DDYFELAYDLYSQAIEI------------SPNSAELFADRAQASIKLQNFTEAVADANRAIE-----LEPS---------   68 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~------------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~-----l~p~---------   68 (374)
                      ...|++|...|.-|...            .|.+...++.+|.+...+|+.+-|.....++|-     ++|.         
T Consensus       251 s~sYeqaq~~F~~av~~~d~n~v~~lL~ssPYHvdsLLqva~~~r~qgD~e~aadLieR~Ly~~d~a~hp~F~~~sg~cR  330 (665)
T KOG2422|consen  251 SNSYEQAQRDFYLAVIVHDPNNVLILLISSPYHVDSLLQVADIFRFQGDREMAADLIERGLYVFDRALHPNFIPFSGNCR  330 (665)
T ss_pred             chHHHHHHHHHHHHHhhcCCcceeeeeccCCcchhHHHHHHHHHHHhcchhhHHHHHHHHHHHHHHHhcccccccccccc
Confidence            44577777777666654            455578888999999999988877766666652     2221         


Q ss_pred             -------C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-ChhHH
Q 017264           69 -------M---SKAYWRKATACMKLEEYETAKVALEKGASLAPG-DSRFT  107 (374)
Q Consensus        69 -------~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~-~~~~~  107 (374)
                             +   -.++|+.-+.+.+.|.+..|.+++.-.+.++|. |+-+.
T Consensus       331 L~y~~~eNR~FyL~l~r~m~~l~~RGC~rTA~E~cKlllsLdp~eDPl~~  380 (665)
T KOG2422|consen  331 LPYIYPENRQFYLALFRYMQSLAQRGCWRTALEWCKLLLSLDPSEDPLGI  380 (665)
T ss_pred             CcccchhhHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhcCCcCCchhH
Confidence                   1   235556666778899999999999999999998 66433

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=82.39  E-value=6.7  Score=41.89  Aligned_cols=78  Identities=21%  Similarity=0.095  Sum_probs=48.3

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET   88 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e   88 (374)
                      |..+...|-.++|+.+|.+.-+.        -.+-..|...|++.+|++.++.-=+++  ....||++|..+...++.+.
T Consensus       807 AvLAieLgMlEeA~~lYr~ckR~--------DLlNKlyQs~g~w~eA~eiAE~~DRiH--Lr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  807 AVLAIELGMLEEALILYRQCKRY--------DLLNKLYQSQGMWSEAFEIAETKDRIH--LRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHH--------HHHHHHHHhcccHHHHHHHHhhcccee--hhhhHHHHHHHHHhhccHHH
Confidence            34444555556666666553221        122234555566666666443322222  34579999999999999999


Q ss_pred             HHHHHHHH
Q 017264           89 AKVALEKG   96 (374)
Q Consensus        89 A~~~~~~a   96 (374)
                      |+++|+++
T Consensus       877 AleyyEK~  884 (1416)
T KOG3617|consen  877 ALEYYEKA  884 (1416)
T ss_pred             HHHHHHhc
Confidence            99999985

>KOG1310 consensus WD40 repeat protein [General function prediction only]

Probab=82.30  E-value=4.1  Score=41.23  Aligned_cols=74  Identities=16%  Similarity=0.097  Sum_probs=60.9

Q ss_pred             HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc---CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           47 IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        47 ~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg---~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +..+....|+.+|.++++..|.....+.+++.++...+   +.-.|+..+..+++++|.....+.++.++...|...
T Consensus       385 ly~~~~~~~i~~~s~a~q~~~~~~~~l~nraa~lmkRkW~~d~~~AlrDch~Alrln~s~~kah~~la~aL~el~r~  461 (758)
T KOG1310|consen  385 LYESIVSGAISHYSRAIQYVPDAIYLLENRAAALMKRKWRGDSYLALRDCHVALRLNPSIQKAHFRLARALNELTRY  461 (758)
T ss_pred             hhhHHHHHHHHHHHHHhhhccchhHHHHhHHHHHHhhhccccHHHHHHhHHhhccCChHHHHHHHHHHHHHHHHhhH
Confidence            33456788999999999999999999999999888754   455777888889999999888888888887777665

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=82.27  E-value=34  Score=29.97  Aligned_cols=27  Identities=22%  Similarity=0.076  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGAS   98 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~   98 (374)
                      +.--||.+-++.|+|..|...|.+...
T Consensus       169 ArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         169 AREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            444588888999999999999998765

>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]

Probab=82.06  E-value=9.8  Score=36.49  Aligned_cols=92  Identities=16%  Similarity=0.134  Sum_probs=66.6

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCHHHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKATACMKLEEYETAKVA   92 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~~~~~lg~~~eA~~~   92 (374)
                      .-||..-..+|+-.....|+ +..-.|||.+..+..=.+.++...+-+....  ..+..+|-.+|..+.++|+..+|...
T Consensus       309 dtDW~~I~aLYdaL~~~apS-PvV~LNRAVAla~~~Gp~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~a  387 (415)
T COG4941         309 DTDWPAIDALYDALEQAAPS-PVVTLNRAVALAMREGPAAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAA  387 (415)
T ss_pred             CCChHHHHHHHHHHHHhCCC-CeEeehHHHHHHHhhhHHhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHH
Confidence            34566666667665555555 5666788888877766777777766555431  23445667789999999999999999


Q ss_pred             HHHHHhcCCCChhHH
Q 017264           93 LEKGASLAPGDSRFT  107 (374)
Q Consensus        93 ~~~a~~l~p~~~~~~  107 (374)
                      |++++.+.++..+-.
T Consensus       388 ydrAi~La~~~aer~  402 (415)
T COG4941         388 YDRAIALARNAAERA  402 (415)
T ss_pred             HHHHHHhcCChHHHH
Confidence            999999998766533

>cd02683 MIT_1 MIT: domain contained within Microtubule Interacting and Trafficking molecules

Probab=81.66  E-value=4  Score=30.38  Aligned_cols=30  Identities=27%  Similarity=0.350  Sum_probs=22.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      |..+..+|..+=..|+|++|+.+|.++|..
T Consensus         6 a~~l~~~Ave~D~~g~y~eAl~~Y~~aie~   35 (77)
T cd02683           6 AKEVLKRAVELDQEGRFQEALVCYQEGIDL   35 (77)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            446677778888888888888887777664

This sub-family of MIT domains is found in proteins with unknown function, co-occuring with an as yet undescribed domain. The molecular function of the MIT domain is unclear.

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=81.65  E-value=5.9  Score=37.26  Aligned_cols=60  Identities=20%  Similarity=0.167  Sum_probs=51.0

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      .++...|..|...|.+.+|++.+++++.++|.+...+..+-.+|..+|+--.|...|++.
T Consensus       280 kllgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyery  339 (361)
T COG3947         280 KLLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERY  339 (361)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHH
Confidence            345556778888999999999999999999999999999999999999977777777654

>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]

Probab=81.25  E-value=2.8  Score=46.53  Aligned_cols=98  Identities=26%  Similarity=0.363  Sum_probs=79.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHH------HHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYD------LYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~------~y~~aL~-~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--------   66 (374)
                      +...+..|......+.+.+|.+      +++.... +.|.....|..++..+.+++++++|+....+|+-+.        
T Consensus       932 a~~~~e~gq~~~~e~~~~~~~~~~~slnl~~~v~~~~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds 1011 (1236)
T KOG1839|consen  932 AKDSPEQGQEALLEDGFSEAYELPESLNLLNNVMGVLHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDS 1011 (1236)
T ss_pred             hhhhhhhhhhhhcccchhhhhhhhhhhhHHHHhhhhcchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCC
Confidence            3456788888889999988887      5553333 377778899999999999999999999998888553        


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      |+....+.+++...+..+....|+..+.++..+
T Consensus      1012 ~~t~~~y~nlal~~f~~~~~~~al~~~~ra~~l 1044 (1236)
T KOG1839|consen 1012 PNTKLAYGNLALYEFAVKNLSGALKSLNRALKL 1044 (1236)
T ss_pred             HHHHHHhhHHHHHHHhccCccchhhhHHHHHHh
Confidence            356778889999999999988898888877654

>KOG0529 consensus Protein geranylgeranyltransferase type II, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=81.21  E-value=22  Score=35.02  Aligned_cols=102  Identities=10%  Similarity=0.023  Sum_probs=77.7

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHH-HHHHHHHHhcC---
Q 017264           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYW-RKATACMKLEE---   85 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~~a~~-~lg~~~~~lg~---   85 (374)
                      +.+..-.++-+.+...+|+.+|....++..|..++.+.+  ++..-++.++++++.+|.+-.+|. |+-++-.....   
T Consensus        85 ~ek~~~ld~eL~~~~~~L~~npksY~aW~hR~w~L~~~p~~~~~~EL~lcek~L~~D~RNfh~W~YRRfV~~~~~~~~~~  164 (421)
T KOG0529|consen   85 LEKQALLDEELKYVESALKVNPKSYGAWHHRKWVLQKNPHSDWNTELQLCEKALKQDPRNFHAWHYRRFVVEQAERSRNL  164 (421)
T ss_pred             HHHHHhhHHHHHHHHHHHHhCchhHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcCcccccchHHHHHHHHHHhccccc
Confidence            344446778889999999999999999999999998875  468899999999999998766554 44444444444   


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..+-+++.++++.-++.|-.+......+
T Consensus       165 ~~~El~ftt~~I~~nfSNYsaWhyRs~l  192 (421)
T KOG0529|consen  165 EKEELEFTTKLINDNFSNYSAWHYRSLL  192 (421)
T ss_pred             chhHHHHHHHHHhccchhhhHHHHHHHH
Confidence            5677788888888877776665555554

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.94  E-value=4.5  Score=40.52  Aligned_cols=95  Identities=17%  Similarity=0.124  Sum_probs=73.2

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      .+..+-..|+|+.|+..+..+-..-.....+..-|-..+.+++++++|+..+.-.+...-..++....-|...-.+|-++
T Consensus       329 ~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d  408 (831)
T PRK15180        329 RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIEDEEVLTVAAGSADALQLFD  408 (831)
T ss_pred             HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccCChhheeeecccHHHHhHHH
Confidence            45566778999999998877666544444444555566778999999999888888766667777777777778888899


Q ss_pred             HHHHHHHHHHhcCCC
Q 017264           88 TAKVALEKGASLAPG  102 (374)
Q Consensus        88 eA~~~~~~a~~l~p~  102 (374)
                      +|.-++.+.+.++|.
T Consensus       409 ~~~~~wk~~~~~~~~  423 (831)
T PRK15180        409 KSYHYWKRVLLLNPE  423 (831)
T ss_pred             HHHHHHHHHhccCCh
Confidence            999999999888765

>PF15015 NYD-SP12_N: Spermatogenesis-associated, N-terminal

Probab=80.83  E-value=8.9  Score=37.89  Aligned_cols=79  Identities=15%  Similarity=0.088  Sum_probs=60.5

Q ss_pred             HHHHHHccCHHHHHHHHHHHHHhCC--------C-----C-----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           43 AQASIKLQNFTEAVADANRAIELEP--------S-----M-----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        43 a~~~~~l~~~~~Al~~~~~al~l~p--------~-----~-----~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      |..++++++|..|..-|..||++..        .     +     .-..-.+..||.++++.+.|+..-.+.+-++|...
T Consensus       183 as~~yrqk~ya~Aa~rF~taLelcskg~a~~k~~~~~~~di~~vaSfIetklv~CYL~~rkpdlALnh~hrsI~lnP~~f  262 (569)
T PF15015_consen  183 ASSCYRQKKYAVAAGRFRTALELCSKGAALSKPFKASAEDISSVASFIETKLVTCYLRMRKPDLALNHSHRSINLNPSYF  262 (569)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHhhhhhccCCCCCChhhHHHHHHHHHHHHHHhhhhcCCCchHHHHHhhhhhcCcchh
Confidence            4455567777777777777776632        1     1     11234689999999999999999999999999999


Q ss_pred             hHHHHHHHHHHHHHhhh
Q 017264          105 RFTNLIKECEERIAEET  121 (374)
Q Consensus       105 ~~~~~~~~~~~~l~~~~  121 (374)
                      .-+.|.+.|...|.+..
T Consensus       263 rnHLrqAavfR~LeRy~  279 (569)
T PF15015_consen  263 RNHLRQAAVFRRLERYS  279 (569)
T ss_pred             hHHHHHHHHHHHHHHHH
Confidence            88888888888888774

>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []

Probab=80.82  E-value=7.7  Score=35.65  Aligned_cols=62  Identities=15%  Similarity=0.166  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      ...+...+|.-|+.+|+|++|+..++.++..-.      -....+..+..|++.+|+.+..+.+.-+.
T Consensus       177 ~~~l~~~~A~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~~leL  244 (247)
T PF11817_consen  177 ASYLSLEMAEEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTTSLEL  244 (247)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            377788899999999999999999999875532      13456778888999999988887765444

Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=80.48  E-value=11  Score=31.36  Aligned_cols=42  Identities=26%  Similarity=0.212  Sum_probs=17.6

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (374)
Q Consensus        23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~   64 (374)
                      +.+...++-...++.+++.+|.+|-++|+..+|-..+.+|++
T Consensus       107 ki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen  107 KIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             HHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence            334443333334455555555555555555555555555544

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A

Probab=80.46  E-value=7.2  Score=32.67  Aligned_cols=48  Identities=23%  Similarity=0.214  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      .....+|...+..|+|.-|+..++.++..+|++..+...++.+|..+|
T Consensus        71 d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg  118 (141)
T PF14863_consen   71 DKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLG  118 (141)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Confidence            334444444445555555555555555555555555555555544443

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=80.33  E-value=6  Score=26.01  Aligned_cols=24  Identities=25%  Similarity=0.260  Sum_probs=15.4

Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           74 WRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      +.+|.+|..+|+++.|...++..+
T Consensus         3 LdLA~ayie~Gd~e~Ar~lL~evl   26 (44)
T TIGR03504         3 LDLARAYIEMGDLEGARELLEEVI   26 (44)
T ss_pred             hHHHHHHHHcCChHHHHHHHHHHH
Confidence            456666666666666666666665

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
2xcm_C	92	Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord		1e-37
2jki_S	90	Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Leng		6e-36
1rl1_A	114	Solution Structure Of Human Sgt1 Cs Domain Length =		8e-13
1wao_1	477	Pp5 Structure Length = 477		8e-11
1a17_A	166	Tetratricopeptide Repeats Of Protein Phosphatase 5		4e-10
2vyi_A	131	Crystal Structure Of The Tpr Domain Of Human Sgt Le		4e-10
2bug_A	140	Solution Structure Of The Tpr Domain From Protein P		8e-10
3upv_A	126	Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length =		5e-09
3uq3_A	258	Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length =		5e-09
2lni_A	133	Solution Nmr Structure Of Stress-Induced-Phosphopro		2e-07
1elw_A	118	Crystal Structure Of The Tpr1 Domain Of Hop In Comp		8e-07
4gco_A	126	Central Domain Of Stress-Induced Protein-1 (Sti-1)		2e-06
3kd7_A	125	Designed Tpr Module (Ctpr390) In Complex With Its P		2e-06
2c2l_A	281	Crystal Structure Of The Chip U-Box E3 Ubiquitin Li		3e-06
3q47_B	137	Crystal Structure Of Tpr Domain Of Chip Complexed W		4e-06
2dba_A	148	The Solution Structure Of The Tetratrico Peptide Re		3e-05
1na0_A	125	Design Of Stable Alpha-Helical Arrays From An Ideal		4e-05
3sz7_A	164	Crystal Structure Of The Sgt2 Tpr Domain From Asper		6e-05
1qz2_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Compl		8e-05
2wqh_A	125	Crystal Structure Of Ctpr3y3 Length = 125		1e-04
1p5q_A	336	Crystal Structure Of Fkbp52 C-Terminal Domain Lengt		3e-04
2fo7_A	136	Crystal Structure Of An 8 Repeat Consensus Tpr Supe		4e-04

>pdb|2XCM|C Chain C, Complex Of Hsp90 N-Terminal, Sgt1 Cs And Rar1 Chord2 Domain Length = 92

Iteration: 1
 Score =  153 bits (387), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 71/91 (78%), Positives = 81/91 (89%)
Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61
Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 263
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>pdb|2JKI|S Chain S, Complex Of Hsp90 N-terminal And Sgt1 Cs Domain Length = 90

Iteration: 1
 Score =  148 bits (373), Expect = 6e-36,   Method: Composition-based stats.
 Identities = 70/88 (79%), Positives = 80/88 (90%)
Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 1   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 60
Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 260
            KC+YEVLSTK+EI LAKA+ I W+SLE
Sbjct: 61  DKCKYEVLSTKIEICLAKADIITWASLE 88

>pdb|1RL1|A Chain A, Solution Structure Of Human Sgt1 Cs Domain Length = 114

Iteration: 1
 Score = 71.2 bits (173), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 33/88 (37%), Positives = 55/88 (62%)
Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct: 9   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 68
Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 260
            +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 69  EQSTFKVLSTKIEIKLKKPEAVRWEKLE 96

>pdb|1WAO|1 Chain 1, Pp5 Structure Length = 477

Iteration: 1
 Score = 64.7 bits (156), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 125
Query: 122 GE 123
            E
Sbjct: 126 FE 127

>pdb|1A17|A Chain A, Tetratricopeptide Repeats Of Protein Phosphatase 5 Length = 166

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/122 (30%), Positives = 66/122 (54%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132
Query: 122 GE 123
            E
Sbjct: 133 FE 134

>pdb|2VYI|A Chain A, Crystal Structure Of The Tpr Domain Of Human Sgt Length = 131

Iteration: 1
 Score = 62.4 bits (150), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 37/102 (36%), Positives = 55/102 (53%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  RAI ++P+ SKAY R  
Sbjct: 28  FEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMG 87
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
            A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct: 88  LALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>pdb|3UPV|A Chain A, Tpr2b-Domain:phsp70-Complex Of Yeast Sti1 Length = 126

Iteration: 1
 Score = 58.9 bits (141), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 39/99 (39%), Positives = 57/99 (57%), Gaps = 4/99 (4%)
Query: 10  KEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM 69
           KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+ 
Sbjct: 12  KEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNF 71
Query: 70  SKAYWRKATACMKLEEY----ETAKVALEKGASLAPGDS 104
            +AY RKATA + ++EY    ET   A  K A +  G S
Sbjct: 72  VRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSS 110

>pdb|3UQ3|A Chain A, Tpr2ab-Domain:phsp90-Complex Of Yeast Sti1 Length = 258

Iteration: 1
 Score = 58.5 bits (140), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 35/84 (41%), Positives = 52/84 (61%), Gaps = 4/84 (4%)
Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+  +AY RKATA + ++
Sbjct: 162 YTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVK 221
Query: 85  EY----ETAKVALEKGASLAPGDS 104
           EY    ET   A  K A +  G S
Sbjct: 222 EYASALETLDAARTKDAEVNNGSS 245

>pdb|2LNI|A Chain A, Solution Nmr Structure Of Stress-Induced-Phosphoprotein 1 Sti1 From Homo Sapiens, Northeast Structural Genomics Consortium Target Hr4403e Length = 133

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/99 (32%), Positives = 51/99 (51%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL 99
             I+LEP+  K Y RKA A   +++Y  A    +K   L
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDL 113

>pdb|1ELW|A Chain A, Crystal Structure Of The Tpr1 Domain Of Hop In Complex With A Hsc70 Peptide Length = 118

Iteration: 1
 Score = 51.2 bits (121), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 29/94 (30%), Positives = 52/94 (55%)
Query: 3  TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA 62
           +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  + 
Sbjct: 5  NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKT 64
Query: 63 IELEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
          ++L+P   K Y RKA A   L  +E AK   E+G
Sbjct: 65 VDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEG 98

>pdb|4GCO|A Chain A, Central Domain Of Stress-Induced Protein-1 (Sti-1) From C.Elegans Length = 126

Iteration: 1
 Score = 50.4 bits (119), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 30/113 (26%), Positives = 53/113 (46%)
Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71
Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
             I L+    K Y RKA   + + E+  A+ A E    + P +      ++ C
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124

>pdb|3KD7|A Chain A, Designed Tpr Module (Ctpr390) In Complex With Its Peptide-Ligand (Hsp90 Peptide) Length = 125

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 24/88 (27%), Positives = 51/88 (57%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+A  + +   A  K  ++ +A+    +A+EL+P+ +KA++R+ 
Sbjct: 25  YQKAIEYYQKALELDPNNASAWYNLGNAYYKQGDYQKAIEYYQKALELDPNNAKAWYRRG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  K  +Y+ A    +K   L P +++
Sbjct: 85  NAYYKQGDYQKAIEDYQKALELDPNNAK 112

>pdb|2C2L|A Chain A, Crystal Structure Of The Chip U-Box E3 Ubiquitin Ligase Length = 281

Iteration: 1
 Score = 49.7 bits (117), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 102

>pdb|3Q47|B Chain B, Crystal Structure Of Tpr Domain Of Chip Complexed With Pseudophosphorylated Smad1 Peptide Length = 137

Iteration: 1
 Score = 49.3 bits (116), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 29/99 (29%), Positives = 53/99 (53%)
Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           A+EL+    KA++      +++E Y+ A   L++  SLA
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLA 107

>pdb|2DBA|A Chain A, The Solution Structure Of The Tetratrico Peptide Repeat Of Human Smooth Muscle Cell Associated Protein-1, Isoform 2 Length = 148

Iteration: 1
 Score = 46.2 bits (108), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 31/110 (28%), Positives = 57/110 (51%), Gaps = 3/110 (2%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISP---NSAELFADRAQASIKLQNFTEAVADANR 61
           L K+  E F    +  A   Y+QA+ +     + A L  +RA   +KL+++ +A  +A++
Sbjct: 31  LRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASK 90
Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK 111
           AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++
Sbjct: 91  AIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR 140

>pdb|1NA0|A Chain A, Design Of Stable Alpha-Helical Arrays From An Idealized Tpr Motif Length = 125

Iteration: 1
 Score = 45.8 bits (107), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 49/87 (56%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            A  K  +Y+ A    +K   L P ++
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDPNNA 111

>pdb|3SZ7|A Chain A, Crystal Structure Of The Sgt2 Tpr Domain From Aspergillus Fumigatus Length = 164

Iteration: 1
 Score = 45.4 bits (106), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 30/92 (32%), Positives = 46/92 (50%)
Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  A  
Sbjct: 14  LKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATV 73
Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKG 96
           ++P  SKA+ R   A   + +Y+ AK A EKG
Sbjct: 74  VDPKYSKAWSRLGLARFDMADYKGAKEAYEKG 105

>pdb|1QZ2|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Complex With The C-Terminal Peptide Meevd Of Hsp90 Length = 336

Iteration: 1
 Score = 44.7 bits (104), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           A   +KLQ F+ A+   N+A+EL+ +  K  +R+  A + + ++E A+   +K   L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLFRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 DSRFTNLIKECEERI 117
           +      +  C++RI
Sbjct: 263 NKAAKTQLAVCQQRI 277

>pdb|2WQH|A Chain A, Crystal Structure Of Ctpr3y3 Length = 125

Iteration: 1
 Score = 44.3 bits (103), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 24/87 (27%), Positives = 48/87 (55%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELYPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELYPNNAEAWYNLG 84
Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            A  K  +Y+ A    +K   L P ++
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELYPNNA 111

>pdb|1P5Q|A Chain A, Crystal Structure Of Fkbp52 C-Terminal Domain Length = 336

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           A   +KLQ F+ A+   N+A+EL+ +  K   R+  A + + ++E A+   +K   L P 
Sbjct: 203 AMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN 262
Query: 103 DSRFTNLIKECEERI 117
           +      +  C++RI
Sbjct: 263 NKAAKTQLAVCQQRI 277

>pdb|2FO7|A Chain A, Crystal Structure Of An 8 Repeat Consensus Tpr Superhelix (Trigonal Crystal Form) Length = 136

Iteration: 1
 Score = 42.4 bits (98), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 24/84 (28%), Positives = 45/84 (53%)
Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76
Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	2e-34
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	2e-33
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	2e-31
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	7e-04
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	3e-30
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	2e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	7e-29
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	6e-05
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	2e-28
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	6e-06
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	4e-28
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	2e-04
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	5e-28
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	2e-06
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	1e-27
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	7e-07
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	8e-27
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	3e-26
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	5e-06
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	1e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	5e-24
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	3e-04
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	3e-21
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	7e-20
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	3e-05
2l6j_A	111	TPR repeat-containing protein associated with HSP;	9e-20
2l6j_A	111	TPR repeat-containing protein associated with HSP;	6e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-18
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	7e-17
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-14
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	1e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-09
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	2e-08
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	5e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	6e-18
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-11
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-10
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	1e-09
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	2e-06
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	1e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-17
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-15
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-14
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	5e-10
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	2e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-09
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	4e-07
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	1e-16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	2e-16
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	1e-04
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-14
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	5e-12
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	6e-10
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	1e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-08
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	3e-07
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	4e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	6e-14
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	8e-13
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-11
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	2e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-10
2gw1_A	514	Mitochondrial precursor proteins import receptor;	1e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	1e-13
2kat_A	115	Uncharacterized protein; NESG, structure, structur	1e-13
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	2e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	8e-13
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	2e-10
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	9e-13
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	8e-09
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-08
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	2e-05
3u4t_A	272	TPR repeat-containing protein; structural genomics	1e-12
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	9e-11
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-10
3u4t_A	272	TPR repeat-containing protein; structural genomics	4e-08
3u4t_A	272	TPR repeat-containing protein; structural genomics	8e-06
3u4t_A	272	TPR repeat-containing protein; structural genomics	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	4e-04
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-12
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	6e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	9e-11
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	1e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-10
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-09
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	7e-12
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	5e-11
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	1e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	2e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	3e-10
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	6e-09
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-06
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	2e-11
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	1e-07
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	3e-11
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	2e-09
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	8e-05
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-11
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	7e-10
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	5e-09
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	1e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	4e-07
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	1e-10
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-09
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	3e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	5e-08
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	6e-06
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-10
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	2e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-10
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-06
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	1e-05
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	6e-10
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-09
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	2e-08
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	1e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-09
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	3e-08
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-07
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	1e-05
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-10
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	4e-08
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	5e-10
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-09
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	2e-07
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	3e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	8e-10
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	1e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	2e-08
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	4e-05
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	3e-04
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-10
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	9e-08
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	1e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	2e-06
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	8e-06
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	1e-09
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	2e-04
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	5e-09
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	4e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-08
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	3e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-07
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	2e-06
3ugm_A	1047	TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xan	6e-04
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-09
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	2e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-08
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	7e-07
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	1e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-05
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	8e-05
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	9e-09
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	6e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	2e-08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	3e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	2e-08
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	6e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	7e-07
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	1e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	9e-08
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	5e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	8e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-05
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	1e-04
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-08
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	3e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	1e-05
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	3e-08
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	9e-06
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	4e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	6e-08
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	5e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	8e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-04
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	5e-07
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-06
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	3e-05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	5e-07
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	2e-04
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	2e-06
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	4e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	8e-06
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	2e-05
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	8e-06
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	9e-06
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	9e-06
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	1e-05
3k9i_A	117	BH0479 protein; putative protein binding protein,	5e-04
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	5e-04
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	7e-04

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S* Length = 92

 Score =  121 bits (304), Expect = 2e-34
 Identities = 71/91 (78%), Positives = 81/91 (89%)

Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           KYRHE+YQKPEEVVVTVFAKGIP +NV +DFGEQILSV I+VPGE+AY+ QPRLFGKIIP
Sbjct: 2   KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIP 61

Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLEFSK 263
            KC+YEVLSTK+EI LAKA+ I W+SLE  K
Sbjct: 62  DKCKYEVLSTKIEICLAKADIITWASLEHGK 92

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 114

 Score =  120 bits (301), Expect = 2e-33
 Identities = 34/108 (31%), Positives = 59/108 (54%)

Query: 168 APARPKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 227
              + K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L 
Sbjct: 4   MTHQSKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELL 63

Query: 228 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPS 275
             IIP +  ++VLSTK+EI+L K E ++W  LE       P++     
Sbjct: 64  HPIIPEQSTFKVLSTKIEIKLKKPEAVRWEKLEGQGDVPTPKQFVADV 111

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score =  114 bits (287), Expect = 2e-31
 Identities = 36/121 (29%), Positives = 64/121 (52%), Gaps = 2/121 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +   + KE F    +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+
Sbjct: 4   AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNK 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAE 119
           AIE +P+  +AY RKATA + ++EY +A   L+   +      +      I +   + ++
Sbjct: 64  AIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123

Query: 120 E 120
           +
Sbjct: 124 Q 124

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} Length = 126

 Score = 38.4 bits (90), Expect = 7e-04
 Identities = 12/55 (21%), Positives = 20/55 (36%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           AE      +      ++  AV      I+  P  ++ Y  +A A  KL  +  A
Sbjct: 3  KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEA 57

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 Length = 118

 Score =  111 bits (280), Expect = 3e-30
 Identities = 31/116 (26%), Positives = 58/116 (50%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
              +L++K  +A      + A   YS+AI++ P++  L+++R+ A  K  ++ +A  D  
Sbjct: 3   QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGC 62

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
           + ++L+P   K Y RKA A   L  +E AK   E+G      + +    ++  E R
Sbjct: 63  KTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEAR 118

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3 Length = 134

 Score =  109 bits (274), Expect = 2e-29
 Identities = 24/102 (23%), Positives = 44/102 (43%), Gaps = 13/102 (12%)

Query: 172 PKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------------GEE 218
              +++ Y+K P+ VVV V+ K I      V F EQ  ++                    
Sbjct: 18  AFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHT 77

Query: 219 AYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLE 260
            + +Q +L   I P +C +   +++++I L K +  +W  LE
Sbjct: 78  TFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLE 119

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score =  107 bits (270), Expect = 7e-29
 Identities = 30/114 (26%), Positives = 53/114 (46%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A + + K  E F    +  A   Y++A++  P +A L+++RA    KL  F  A+ D +
Sbjct: 12  LAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCD 71

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
             I L+    K Y RKA   + + E+  A+ A E    + P +      ++ C 
Sbjct: 72  TCIRLDSKFIKGYIRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNCL 125

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} Length = 126

 Score = 41.4 bits (98), Expect = 6e-05
 Identities = 14/64 (21%), Positives = 30/64 (46%)

Query: 26 SQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE 85
          ++   I+P  A+   ++     K  ++  A+   N A++ +P  +  Y  +A    KL E
Sbjct: 3  ARLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLME 62

Query: 86 YETA 89
          ++ A
Sbjct: 63 FQRA 66

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score =  108 bits (271), Expect = 2e-28
 Identities = 33/134 (24%), Positives = 56/134 (41%), Gaps = 2/134 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           +  L+ +   A     +  A DLY+QA+ I+P +    ++RA A        +A  DA  
Sbjct: 11  SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAEL 70

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP--GDSRFTNLIKECEERIAE 119
           A  ++P  SKA+ R   A   + +Y+ AK A EKG       G       ++  + +I E
Sbjct: 71  ATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEE 130

Query: 120 ETGELQKQPLETGP 133
                +    +   
Sbjct: 131 ANRGAEPPADDVDD 144

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} Length = 164

 Score = 45.1 bits (107), Expect = 6e-06
 Identities = 17/90 (18%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
            E A +    A  + P  ++ ++    A   + ++  A     + IE E +      ++ 
Sbjct: 61  HEKAAEDAELATVVDPKYSKAWSRLGLARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120

Query: 77  -ATACMKLEEYETAKVALEKGASLAPGDSR 105
             T   K+EE              A G SR
Sbjct: 121 LETTKRKIEEANRGAEPPADDVDDAAGASR 150

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score =  107 bits (268), Expect = 4e-28
 Identities = 37/122 (30%), Positives = 66/122 (54%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 13  AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 72

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET 121
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++ 
Sbjct: 73  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKA 132

Query: 122 GE 123
            E
Sbjct: 133 FE 134

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A Length = 166

 Score = 40.8 bits (96), Expect = 2e-04
 Identities = 17/87 (19%), Positives = 39/87 (44%), Gaps = 2/87 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWR 75
           +  A    ++AIE+     + +  RA +++ L  F  A+ D    ++++P    +K  ++
Sbjct: 63  YGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQ 122

Query: 76  KATACMKLEEYETAKVALEKGASLAPG 102
           +    +K + +E A    E   S+   
Sbjct: 123 ECNKIVKQKAFERAIAGDEHKRSVVDS 149

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score =  105 bits (265), Expect = 5e-28
 Identities = 40/118 (33%), Positives = 61/118 (51%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +  E    + FE A   Y +AIE++P +A  F +RA A  KL N+  AV D  R
Sbjct: 12  AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCER 71

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
           AI ++P+ SKAY R   A   L ++  A    +K   L P +  + + +K  E ++ E
Sbjct: 72  AICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE 129

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 Length = 131

 Score = 46.1 bits (110), Expect = 2e-06
 Identities = 19/60 (31%), Positives = 27/60 (45%)

Query: 30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
          E     AE         +K++NF  AV    +AIEL P+ +  +  +A A  KL  Y  A
Sbjct: 6  EEDSAEAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGA 65

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score =  104 bits (262), Expect = 1e-27
 Identities = 33/115 (28%), Positives = 54/115 (46%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
           +A  ++ K  E F    +  A   Y++AI+ +P  A+L+++RA    KL  F  A+ D  
Sbjct: 15  LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCE 74

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE 115
             I+LEP+  K Y RKA A   +++Y  A    +K   L        +  + C  
Sbjct: 75  ECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMM 129

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} Length = 133

 Score = 47.2 bits (113), Expect = 7e-07
 Identities = 13/65 (20%), Positives = 30/65 (46%)

Query: 25 YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
          +     ++P+ A +  ++     +  ++ +A+     AI+  P  +K Y  +A    KL 
Sbjct: 5  HHHHSHMNPDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLL 64

Query: 85 EYETA 89
          E++ A
Sbjct: 65 EFQLA 69

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 Length = 477

 Score =  110 bits (276), Expect = 8e-27
 Identities = 36/119 (30%), Positives = 65/119 (54%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+ +A + F    +E A   YSQAIE++P++A  + +R+ A ++ + +  A+ DA R
Sbjct: 6   AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATR 65

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           AIEL+    K Y+R+A + M L ++  A    E    + P D       +EC + + ++
Sbjct: 66  AIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQK 124

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score =  101 bits (253), Expect = 3e-26
 Identities = 29/124 (23%), Positives = 59/124 (47%), Gaps = 5/124 (4%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 9   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 68

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-----RFTNLIKECEER 116
           A+EL+    KA++      +++E Y+ A   L++  SLA            + ++  +++
Sbjct: 69  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKK 128

Query: 117 IAEE 120
               
Sbjct: 129 RWNS 132

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* Length = 137

 Score = 44.6 bits (106), Expect = 5e-06
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 59  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 118

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 119 PSALRIAKKKRWNSIEER 136

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 148

 Score = 97.4 bits (243), Expect = 1e-24
 Identities = 28/118 (23%), Positives = 57/118 (48%), Gaps = 5/118 (4%)

Query: 6   EKKAK--EAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIKLQNFTEAVADAN 60
           + + +  E F    +  A   Y+QA+ +     +   L  +RA   +KL+++ +A  +A+
Sbjct: 30  QLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEAS 89

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA 118
           +AIE +    KA +R++ A  KL   + A + L++  SL P +  F   ++      +
Sbjct: 90  KAIEKDGGDVKALYRRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGPSS 147

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 99.2 bits (247), Expect = 5e-24
 Identities = 32/119 (26%), Positives = 58/119 (48%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           A+EL+    KA++      +++E Y+ A   L++  SLA               RIA++
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKK 122

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 Length = 281

 Score = 41.4 bits (97), Expect = 3e-04
 Identities = 13/78 (16%), Positives = 33/78 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+E+   S +      Q  ++++++ EA+A+  RA  L       +    
Sbjct: 54  PEQALADCRRALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDI 113

Query: 78  TACMKLEEYETAKVALEK 95
            + +++ + +      E+
Sbjct: 114 PSALRIAKKKRWNSIEER 131

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A Length = 131

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 23/126 (18%), Positives = 50/126 (39%), Gaps = 8/126 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   ++   +A+    F+ A   Y +A E+ P +     ++A    +  ++ +      +
Sbjct: 4   ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEK 63

Query: 62  AIELEP-------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           AIE+          ++KAY R   +  K E+Y+ A     K  +            ++ E
Sbjct: 64  AIEVGRENREDYRQIAKAYARIGNSYFKEEKYKDAIHFYNKSLAEHRTPDVLKKC-QQAE 122

Query: 115 ERIAEE 120
           + + E+
Sbjct: 123 KILKEQ 128

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 83.5 bits (207), Expect = 7e-20
 Identities = 27/120 (22%), Positives = 46/120 (38%), Gaps = 8/120 (6%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A   +     A+    FE A+  Y +AIE+ P++   + ++A    + + F E V    +
Sbjct: 8   AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEK 67

Query: 62  AIELEPSM-------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           A+E+           +KA  R   A  K  +   A     +  S    D      +KE E
Sbjct: 68  AVEVGRETRADYKLIAKAMSRAGNAFQKQNDLSLAVQWFHRSLSEFR-DPELVKKVKELE 126

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} Length = 127

 Score = 42.3 bits (100), Expect = 3e-05
 Identities = 20/89 (22%), Positives = 35/89 (39%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
               ++A    D   A+ K ++F +A    ++AIEL+PS    Y  KA    + +++   
Sbjct: 2   NAMTDAAIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAEC 61

Query: 90  KVALEKGASLAPGDSRFTNLIKECEERIA 118
               EK   +         LI +   R  
Sbjct: 62  VQFCEKAVEVGRETRADYKLIAKAMSRAG 90

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 82.7 bits (205), Expect = 9e-20
 Identities = 17/97 (17%), Positives = 37/97 (38%), Gaps = 1/97 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
              +++    F    +  A   Y Q I   P +   ++++A A IKL  +T+A+    +
Sbjct: 4  FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQ 63

Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS 98
           +    +      R      +LE  + A  +++    
Sbjct: 64 GLRYTSTAEHVAIRSK-LQYRLELAQGAVGSVQIPVV 99

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} Length = 111

 Score = 41.1 bits (97), Expect = 6e-05
 Identities = 17/72 (23%), Positives = 28/72 (38%)

Query: 34  NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVAL 93
           +  E   ++  +  K   + EAV   ++ I  +P     Y  KA A +KL EY  A    
Sbjct: 2   SQFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMC 61

Query: 94  EKGASLAPGDSR 105
           ++G         
Sbjct: 62  QQGLRYTSTAEH 73

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 84.7 bits (210), Expect = 3e-18
 Identities = 14/95 (14%), Positives = 37/95 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I+L+   + A  ++ 
Sbjct: 42  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRG 101

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE 112
              +K  + + A+   +K     P ++       +
Sbjct: 102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQ 136

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 80.5 bits (199), Expect = 7e-17
 Identities = 21/114 (18%), Positives = 41/114 (35%), Gaps = 4/114 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 262 ESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEV 321

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
           +++EP    A   +A A +  E Y+ A    E        D +    +++ +  
Sbjct: 322 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRL 375

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 72.8 bits (179), Expect = 2e-14
 Identities = 24/112 (21%), Positives = 48/112 (42%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
              L  +A  AF    +  A     + +E+    AEL   RA+  IK     +A++D   
Sbjct: 143 MQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKA 202

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
           A +L+   ++A+++ +T   +L ++E +   + +   L     R     K+ 
Sbjct: 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQV 254

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 311 PVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLE 370

Query: 78  TACMKLEEYETA 89
            A   L++ +  
Sbjct: 371 KAQRLLKQSQKR 382

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 11/101 (10%), Positives = 31/101 (30%), Gaps = 12/101 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 193 PRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 252

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
                      A   ++   Y  A    E      P  + +
Sbjct: 253 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSIAEY 293

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 15/102 (14%), Positives = 39/102 (38%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+A  ++ 
Sbjct: 110 LDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKI 169

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 170 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNT 211

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 16/90 (17%), Positives = 36/90 (40%), Gaps = 1/90 (1%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +     DL ++     S    E   +  +  +      +A++  + A++ +P    AY+R
Sbjct: 6   HHSSGVDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYR 65

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
           +AT  + + + + A   L K   L    + 
Sbjct: 66  RATVFLAMGKSKAALPDLTKVIQLKMDFTA 95

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/111 (16%), Positives = 35/111 (31%), Gaps = 15/111 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA----- 72
            + A    ++ I++  +       R    +K     EA  D  + ++  PS ++      
Sbjct: 76  SKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQS 135

Query: 73  ----------YWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                        +A       +Y  A   L+K   +   D+    L  EC
Sbjct: 136 QLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAEC 186

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 Length = 198

 Score = 80.6 bits (199), Expect = 5e-18
 Identities = 28/135 (20%), Positives = 57/135 (42%), Gaps = 16/135 (11%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE----------------LFADRAQA 45
           A D++++  E F  +    A   Y +A++   ++ E                   + A  
Sbjct: 38  AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATC 97

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             K +++ +A+  A++ ++++ +  KA ++   A M     E AK  L K ASL P +  
Sbjct: 98  YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLD 157

Query: 106 FTNLIKECEERIAEE 120
             N  + C  ++ E 
Sbjct: 158 IRNSYELCVNKLKEA 172

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 81.4 bits (202), Expect = 6e-18
 Identities = 31/91 (34%), Positives = 54/91 (59%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A   Y++ I+ +P  A  +++RA A  KL +F EA+AD N+AIE +P+  +AY RKA
Sbjct: 155 WPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKA 214

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTN 108
           TA + ++EY +A   L+   +     +  ++
Sbjct: 215 TAQIAVKEYASALETLDAARTKDAEVNNGSS 245

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 63.3 bits (155), Expect = 1e-11
 Identities = 20/117 (17%), Positives = 42/117 (35%), Gaps = 7/117 (5%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A + Y++A E+  +   L  +RA A  +   +  A++  N A+E    M   Y   +
Sbjct: 21  FDEAIEHYNKAWELHKDITYLN-NRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVIS 79

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNL------IKECEERIAEETGELQKQP 128
            +  ++         L+K                    ++  E+ + +   E    P
Sbjct: 80  KSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNP 136

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 60.3 bits (147), Expect = 1e-10
 Identities = 17/88 (19%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E           ++P  AE      +      ++  AV      I+  P  ++ Y  +A
Sbjct: 121 AEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRA 180

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
            A  KL  +  A     K     P   R
Sbjct: 181 AALAKLMSFPEAIADCNKAIEKDPNFVR 208

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 59.1 bits (144), Expect = 3e-10
 Identities = 15/88 (17%), Positives = 27/88 (30%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + IE    S       A    KL+N  + +  A     + P  ++    + 
Sbjct: 88  AYHKLGDLKKTIEYYQKSLTEH-RTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEG 146

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  ++  A  A  +    AP D+R
Sbjct: 147 KEYFTKSDWPNAVKAYTEMIKRAPEDAR 174

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 57.6 bits (140), Expect = 1e-09
 Identities = 12/70 (17%), Positives = 28/70 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A    ++AIE  PN    +  +A A I ++ +  A+   + A   +  ++     + 
Sbjct: 189 FPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSARE 248

Query: 78  TACMKLEEYE 87
              +  +  +
Sbjct: 249 IDQLYYKASQ 258

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 47.5 bits (114), Expect = 2e-06
 Identities = 17/72 (23%), Positives = 26/72 (36%), Gaps = 1/72 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
            + A+          K + F EA+   N+A EL   ++     +A A  +  EYETA   
Sbjct: 2   GSMADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDIT-YLNNRAAAEYEKGEYETAIST 60

Query: 93  LEKGASLAPGDS 104
           L           
Sbjct: 61  LNDAVEQGREMR 72

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A Length = 336

 Score = 81.9 bits (202), Expect = 1e-17
 Identities = 25/134 (18%), Positives = 56/134 (41%), Gaps = 15/134 (11%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---------------LFADRAQAS 46
           +T ++++    F +  ++ A   Y + +      +                   + A   
Sbjct: 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCH 206

Query: 47  IKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF 106
           +KLQ F+ A+   N+A+EL+ +  K   R+  A + + ++E A+   +K   L P +   
Sbjct: 207 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAA 266

Query: 107 TNLIKECEERIAEE 120
              +  C++RI  +
Sbjct: 267 KTQLAVCQQRIRRQ 280

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 81.9 bits (203), Expect = 2e-17
 Identities = 14/87 (16%), Positives = 34/87 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +  A++  P++   +  RA   + +     A+ D  + I L+   + A  ++ 
Sbjct: 19  LADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRG 78

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
              +K  + + A+   +K     P + 
Sbjct: 79  HLLLKQGKLDEAEDDFKKVLKSNPSEQ 105

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 76.2 bits (188), Expect = 1e-15
 Identities = 21/102 (20%), Positives = 36/102 (35%), Gaps = 4/102 (3%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRA 62
           + A+E   D  +  A   Y   ++  P+ AE              K +   EA+   +  
Sbjct: 239 ESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEV 298

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +++EP    A   +A A +  E Y+ A    E        D 
Sbjct: 299 LQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQ 340

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 23/112 (20%), Positives = 50/112 (44%), Gaps = 2/112 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A     + +E+    AEL   RA+  IK     +A++D   A +L+   ++A+++ +
Sbjct: 136 YTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKIS 195

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEETGE-LQKQ 127
           T   +L ++E +   + +   L     R F +  +  +     E+ E L + 
Sbjct: 196 TLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELIRD 247

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 59.2 bits (144), Expect = 5e-10
 Identities = 14/70 (20%), Positives = 31/70 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  + S+ +++ P++     DRA+A +  + + EA+ D   A E   +  +      
Sbjct: 288 PVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLE 347

Query: 78  TACMKLEEYE 87
            A   L++ +
Sbjct: 348 KAQRLLKQSQ 357

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 58.1 bits (141), Expect = 1e-09
 Identities = 11/96 (11%), Positives = 29/96 (30%), Gaps = 12/96 (12%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
              A      A ++  ++ E F   +    +L +   ++++    ++L+    + +    
Sbjct: 170 PRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYK 229

Query: 74  --------WRKATACMKLEEYETAKVALEKGASLAP 101
                      A   ++   Y  A    E      P
Sbjct: 230 QVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEP 265

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 57.3 bits (139), Expect = 2e-09
 Identities = 14/102 (13%), Positives = 38/102 (37%), Gaps = 15/102 (14%)

Query: 18  FELAYDLYSQAIEISPNSAEL---------------FADRAQASIKLQNFTEAVADANRA 62
            + A D + + ++ +P+  E                   +A  +    ++T A+   ++ 
Sbjct: 87  LDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKI 146

Query: 63  IELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +E+    ++    +A   +K  E   A   L+  + L   ++
Sbjct: 147 LEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNT 188

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 18/111 (16%), Positives = 33/111 (29%), Gaps = 15/111 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
            + A    ++ I +  +       R    +K     EA  D  + ++  PS  +      
Sbjct: 53  SKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAES 112

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                        +A       +Y  A   L+K   +   D+    L  EC
Sbjct: 113 QLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAEC 163

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 50.3 bits (121), Expect = 4e-07
 Identities = 13/70 (18%), Positives = 31/70 (44%)

Query: 36  AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
            E   +  +  +      +A++  + A++ +P    AY+R+AT  + + + + A   L K
Sbjct: 3   VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTK 62

Query: 96  GASLAPGDSR 105
             +L    + 
Sbjct: 63  VIALKMDFTA 72

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 127

 Score = 74.7 bits (183), Expect = 1e-16
 Identities = 23/113 (20%), Positives = 41/113 (36%), Gaps = 10/113 (8%)

Query: 161 SNEAAMAAPARPKY-----RHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSI 212
           S  + + AP    Y      + + Q  + V + +   G+   P +NV V F E+   + +
Sbjct: 3   SGSSGVVAPITTGYTVKISNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLV 62

Query: 213 DVPGEEAYHFQ-PRLFGKIIPAKCRYEVLSTKVEIRLAKA-EPIQWSSLEFSK 263
                ++Y      L   I       +V +  V I   K  E  +W  L   +
Sbjct: 63  KNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCRKKVENTRWDYLTQVE 115

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 29/139 (20%), Positives = 56/139 (40%), Gaps = 19/139 (13%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAI------------------EISPNSAELFADR 42
               L +K  E F+   ++ A D Y  A+                  E+   +  L+A+ 
Sbjct: 10  SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANM 69

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
           +Q  + + +  EA   ++  ++ E +  KA +R+A A +   + + A+  L+      P 
Sbjct: 70  SQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA 129

Query: 103 D-SRFTNLIKECEERIAEE 120
             S     +K   ER AE+
Sbjct: 130 AASVVAREMKIVTERRAEK 148

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} Length = 162

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 12/73 (16%), Positives = 25/73 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A +  S+ ++    + +    RA+A I      EA  D    +   P+ +    R+ 
Sbjct: 79  LHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREM 138

Query: 78  TACMKLEEYETAK 90
               +    + A 
Sbjct: 139 KIVTERRAEKKAD 151

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 73.2 bits (180), Expect = 2e-14
 Identities = 24/94 (25%), Positives = 41/94 (43%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A  L+ +    F    F  A   Y  AIE+ PN    +++ +   I   +  + +    +
Sbjct: 25  AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTK 84

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
           A+E++P  SKA  R+A+A   L  +  A   L  
Sbjct: 85  ALEIKPDHSKALLRRASANESLGNFTDAMFDLSV 118

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 66.3 bits (162), Expect = 5e-12
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +  +  + +A++++P     +  R Q    LQ++  A  D  +A  L P     Y + A
Sbjct: 292 SQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLA 351

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
               K  ++  ++    +     P
Sbjct: 352 CLLYKQGKFTESEAFFNETKLKFP 375

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 20/119 (16%), Positives = 36/119 (30%), Gaps = 16/119 (13%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK----------------LQNFTEAVADANR 61
           F+ A   Y  A  +     ++         K                 + F  A+    +
Sbjct: 394 FDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTK 453

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
           A EL+P   +A    A   +++E+ + A    E  A LA             E    ++
Sbjct: 454 ACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKLQATTFAEAAKIQK 512

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 19/84 (22%), Positives = 33/84 (39%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L  ++I + P     +   A      +N  E      +A++L P     Y+ + 
Sbjct: 259 LLDAQVLLQESINLHPT-PNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRG 317

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                L++Y+ AK   +K  SL P
Sbjct: 318 QMYFILQDYKNAKEDFQKAQSLNP 341

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 59.4 bits (144), Expect = 6e-10
 Identities = 15/84 (17%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + + +A  ++P +   +   A    K   FTE+ A  N      P++ +     A
Sbjct: 326 YKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPTLPEVPTFFA 385

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  +++TA    +    L  
Sbjct: 386 EILTDRGDFDTAIKQYDIAKRLEE 409

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 11/72 (15%), Positives = 21/72 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  +   +++     P   E+    A+      +F  A+   + A  LE    K +    
Sbjct: 360 FTESEAFFNETKLKFPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419

Query: 78  TACMKLEEYETA 89
               K       
Sbjct: 420 PLIGKATILARQ 431

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 58.6 bits (142), Expect = 1e-09
 Identities = 14/89 (15%), Positives = 24/89 (26%), Gaps = 1/89 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D +       +    +  N+A              N  +A      +I L P+   +Y  
Sbjct: 223 DMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPT-PNSYIF 281

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A      E  +      +K   L P   
Sbjct: 282 LALTLADKENSQEFFKFFQKAVDLNPEYP 310

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 56.3 bits (136), Expect = 7e-09
 Identities = 15/72 (20%), Positives = 31/72 (43%), Gaps = 2/72 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A  L ++A E+ P S +     AQ  ++++   EA+     +  L  +M +    +A
Sbjct: 444 FNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILARTMDEKL--QA 501

Query: 78  TACMKLEEYETA 89
           T   +  + +  
Sbjct: 502 TTFAEAAKIQKR 513

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 4/82 (4%)

Query: 18 FELAYDLYSQAIEISPNSAELFAD----RAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
                  +Q   +SP+  + +A     R       +NF EA+     AIEL+P+    Y
Sbjct: 3  HMNGEPDIAQLKGLSPSQRQAYAVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFY 62

Query: 74 WRKATACMKLEEYETAKVALEK 95
             +   +   + E       K
Sbjct: 63 SNISACYISTGDLEKVIEFTTK 84

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 51.3 bits (123), Expect = 3e-07
 Identities = 14/104 (13%), Positives = 34/104 (32%), Gaps = 2/104 (1%)

Query: 8   KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK--LQNFTEAVADANRAIEL 65
           +         ++ AY L S A++   ++ +     A   +      +   ++       L
Sbjct: 179 EVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPL 238

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
             + + A                A+V L++  +L P  + +  L
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFL 282

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} Length = 338

 Score = 71.6 bits (175), Expect = 4e-14
 Identities = 26/137 (18%), Positives = 45/137 (32%), Gaps = 17/137 (12%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-----------------LFADRA 43
            A   +      F ++  E A   Y  AI    +                       + A
Sbjct: 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIA 237

Query: 44  QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
              IKL+ + EA+   N  +  E    KA +R+  A  +L + ++A+    K    AP D
Sbjct: 238 ACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDD 297

Query: 104 SRFTNLIKECEERIAEE 120
                 ++   E+    
Sbjct: 298 KAIRRELRALAEQEKAL 314

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 72.1 bits (177), Expect = 6e-14
 Identities = 21/94 (22%), Positives = 46/94 (48%), Gaps = 1/94 (1%)

Query: 2  ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
          A  L+ K  + F +  ++ A   Y+ A+E+  +    +++ +   + + +  + V  + +
Sbjct: 6  ALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEMSTK 64

Query: 62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEK 95
          A+EL+P  SK   R+A+A   L ++  A   L  
Sbjct: 65 ALELKPDYSKVLLRRASANEGLGKFADAMFDLSV 98

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 70.2 bits (172), Expect = 3e-13
 Identities = 25/112 (22%), Positives = 42/112 (37%), Gaps = 9/112 (8%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIK---------LQNFTEAVADANRAIELEPS 68
           F+ A   Y  AIE+      ++   A    K         ++NF EA     +A +L+P 
Sbjct: 388 FDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPR 447

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
             +A    A   ++ E+ + A    E+ A LA         I   E    ++
Sbjct: 448 SEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEAAKVQQ 499

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 68.6 bits (168), Expect = 8e-13
 Identities = 17/87 (19%), Positives = 40/87 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y+ + +A+++  N++ ++  R Q +  LQN+ +A  D ++A EL+P     Y + A
Sbjct: 286 STEYYNYFDKALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKELDPENIFPYIQLA 345

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  +++  +    +     P   
Sbjct: 346 CLAYRENKFDDCETLFSEAKRKFPEAP 372

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 18/87 (20%), Positives = 36/87 (41%), Gaps = 1/87 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A++   +AIE+ P     +   A       + TE     ++A++L+ + S  Y+ + 
Sbjct: 253 PLGAHEDIKKAIELFPR-VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRG 311

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L+ Y+ A    +K   L P + 
Sbjct: 312 QMNFILQNYDQAGKDFDKAKELDPENI 338

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 11/88 (12%), Positives = 27/88 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A   + +A E+ P +   +   A  + +   F +     + A    P   +     A
Sbjct: 320 YDQAGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPEAPEVPNFFA 379

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                  +++ A    +    L      
Sbjct: 380 EILTDKNDFDKALKQYDLAIELENKLDG 407

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 16/88 (18%), Positives = 28/88 (31%), Gaps = 1/88 (1%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            FE   D  ++  ++    A              +   A  D  +AIEL P ++ +Y   
Sbjct: 218 LFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVN-SYIYM 276

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDS 104
           A       +        +K   L   +S
Sbjct: 277 ALIMADRNDSTEYYNYFDKALKLDSNNS 304

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 59.8 bits (145), Expect = 5e-10
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 9/93 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+    L+S+A    P + E+    A+      +F +A+   + AIELE  +   Y   A
Sbjct: 354 FDDCETLFSEAKRKFPEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIA 413

Query: 78  TACMK---------LEEYETAKVALEKGASLAP 101
               K         +E +  A   LEK + L P
Sbjct: 414 PLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.8 bits (101), Expect = 1e-04
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIE 64
           + +   A  D+  E   +L +    +   S E +    ++  K  + F E +   N   +
Sbjct: 172 KPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEK 231

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           L+  ++ +            +   A   ++K   L P  + +  +
Sbjct: 232 LKEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPRVNSYIYM 276

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 10/87 (11%), Positives = 35/87 (40%), Gaps = 3/87 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRA---IELEPSMSKAYW 74
            +   ++ ++A+E+ P+ +++   RA A+  L  F +A+ D +      +   +  +   
Sbjct: 55  LKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPML 114

Query: 75  RKATACMKLEEYETAKVALEKGASLAP 101
            +      + + +     ++   +   
Sbjct: 115 ERNLNKQAMSKLKEKFGDIDTATATPT 141

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 41.3 bits (97), Expect = 4e-04
 Identities = 12/73 (16%), Positives = 26/73 (35%), Gaps = 1/73 (1%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
              A    D+     + + + +A+   N A+EL+      Y   +   + + + +     
Sbjct: 3   DKYALALKDKGNQFFRNKKYDDAIKYYNWALELKED-PVFYSNLSACYVSVGDLKKVVEM 61

Query: 93  LEKGASLAPGDSR 105
             K   L P  S+
Sbjct: 62  STKALELKPDYSK 74

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A Length = 457

 Score = 70.9 bits (173), Expect = 1e-13
 Identities = 28/135 (20%), Positives = 56/135 (41%), Gaps = 15/135 (11%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNSAE----------LFADRAQA 45
            A  +++K    F    +  A   Y + +         +  E           F + A  
Sbjct: 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMC 326

Query: 46  SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            +KL+ +T+AV   ++A+ L+ +  K  +R+  A + + E+E+AK   EK   + P +  
Sbjct: 327 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKA 386

Query: 106 FTNLIKECEERIAEE 120
               I  C+++  E 
Sbjct: 387 ARLQISMCQKKAKEH 401

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 65.4 bits (160), Expect = 1e-13
 Identities = 16/106 (15%), Positives = 34/106 (32%), Gaps = 6/106 (5%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             +     +    ++  L     +   + + F  A+     A++ +P+ S A+       
Sbjct: 4   ITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTL 63

Query: 81  MKLEEYETAKVALEKGASLAP--GD----SRFTNLIKECEERIAEE 120
               +   A+ A E G + A   GD          ++      A E
Sbjct: 64  QGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFLRRLAREDALE 109

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A Length = 370

 Score = 69.4 bits (170), Expect = 2e-13
 Identities = 22/85 (25%), Positives = 44/85 (51%), Gaps = 1/85 (1%)

Query: 43  AQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG 102
               +K+ ++  AV     A+E++PS +KA +R+A     L+EY+ A   L+K   +AP 
Sbjct: 280 GACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPE 339

Query: 103 DSRFTNLIKECEERIAEETGELQKQ 127
           D      + + +++I  +  + +K 
Sbjct: 340 DKAIQAELLKVKQKIKAQK-DKEKA 363

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 64.4 bits (157), Expect = 8e-13
 Identities = 13/126 (10%), Positives = 36/126 (28%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
               L       +    ++ A  ++     +    A  F         L  + +A+   +
Sbjct: 17  TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYS 76

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE 120
               ++ +  +  +  A   ++L + + A+       +LA        L       +   
Sbjct: 77  YGALMDINEPRFPFHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV 136

Query: 121 TGELQK 126
           T    +
Sbjct: 137 TARKDR 142

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 57.4 bits (139), Expect = 2e-10
 Identities = 11/81 (13%), Positives = 25/81 (30%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
            +    +S ++ E          +   + +A         L+   ++ +         L 
Sbjct: 7   LAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLG 66

Query: 85  EYETAKVALEKGASLAPGDSR 105
            YE A  +   GA +   + R
Sbjct: 67  LYEQALQSYSYGALMDINEPR 87

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 65.9 bits (161), Expect = 9e-13
 Identities = 14/110 (12%), Positives = 38/110 (34%), Gaps = 6/110 (5%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
            + A  +Y + +++  ++            +  +   + +    + +     M  A +R 
Sbjct: 104 EKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKMQYARYRD 163

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQK 126
             + +    YE A+ +L+K     P       L     ++I     E+ +
Sbjct: 164 GLSKLFTTRYEKARNSLQKVILRFPSTEAQKTL-----DKILRIEKEVNR 208

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 54.0 bits (130), Expect = 8e-09
 Identities = 15/88 (17%), Positives = 31/88 (35%), Gaps = 1/88 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ AY  Y + ++ +PN+ +     A+  +      +A+    + ++LE     A     
Sbjct: 70  YDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLG 129

Query: 78  TACMKLEEYETAKV-ALEKGASLAPGDS 104
                  E E  K+    K  S      
Sbjct: 130 NYYYLTAEQEKKKLETDYKKLSSPTKMQ 157

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 52.8 bits (127), Expect = 2e-08
 Identities = 15/103 (14%), Positives = 32/103 (31%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELF----------------ADRAQASIKLQNFTEAVADANR 61
              A   + Q I ++ +  E++                 + A A  K +N+ +A      
Sbjct: 20  NGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKE 79

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            ++  P+        A   +   + + A    EK   L   + 
Sbjct: 80  LLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNL 122

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 2e-05
 Identities = 4/53 (7%), Positives = 14/53 (26%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           +  +   +   + +               + +    + +A     + I   PS
Sbjct: 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS 189

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 66.5 bits (163), Expect = 1e-12
 Identities = 16/84 (19%), Positives = 28/84 (33%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   Y  A++      +++           NF  A+    + I    +  K ++   
Sbjct: 90  DSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELG 149

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A    +EY  A  +  K   L P
Sbjct: 150 QAYYYNKEYVKADSSFVKVLELKP 173

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 61.1 bits (149), Expect = 8e-11
 Identities = 12/87 (13%), Positives = 27/87 (31%), Gaps = 3/87 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR---AIELEPSMSKAYW 74
           +  A +++++      NS  ++  RA    +L  +  A  D       +    + S  + 
Sbjct: 19  YAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFE 78

Query: 75  RKATACMKLEEYETAKVALEKGASLAP 101
                 MK  +   A    +       
Sbjct: 79  YYGKILMKKGQDSLAIQQYQAAVDRDT 105

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 60.7 bits (148), Expect = 9e-11
 Identities = 18/94 (19%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F LA     + I  +    ++F +  QA    + + +A +   + +EL+P++   Y  +A
Sbjct: 124 FPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRA 183

Query: 78  TACMKL---EEYETAKVALEKGASLAPGDSRFTN 108
            A        +   AK   EK   +         
Sbjct: 184 RANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 58.1 bits (141), Expect = 8e-10
 Identities = 10/84 (11%), Positives = 26/84 (30%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
             + Y   +  +   +  F    +  +K    + A+     A++ + +    Y +  +  
Sbjct: 59  DIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYF 118

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
                +  A   +EK       D 
Sbjct: 119 YNKGNFPLAIQYMEKQIRPTTTDP 142

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 53.0 bits (128), Expect = 4e-08
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 11/98 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSK--- 71
           +  A   + + +E+ PN    +  RA+A+      T    A     + IE+         
Sbjct: 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYK 217

Query: 72  -----AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                A    A       +   A  A +   +L P + 
Sbjct: 218 DELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNK 255

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 45.7 bits (109), Expect = 8e-06
 Identities = 13/61 (21%), Positives = 27/61 (44%)

Query: 35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALE 94
          + ++    A    K  N+ EA+   N+    + +    Y R+A    +L +Y+ A+  +E
Sbjct: 2  NDDVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIE 61

Query: 95 K 95
           
Sbjct: 62 T 62

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} Length = 272

 Score = 44.2 bits (105), Expect = 3e-05
 Identities = 14/80 (17%), Positives = 23/80 (28%), Gaps = 8/80 (10%)

Query: 15  DDYFELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELE 66
           D    LA   Y + IE+             E     A      ++  +A A     + L+
Sbjct: 192 DTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALD 251

Query: 67  PSMSKAYWRKATACMKLEEY 86
           P+  KA             +
Sbjct: 252 PTNKKAIDGLKMKLEHHHHH 271

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 66.8 bits (162), Expect = 5e-12
 Identities = 70/427 (16%), Positives = 124/427 (29%), Gaps = 134/427 (31%)

Query: 5   LEKKAKEA---FIDDYFELAYD------------------LYSQAIEISPNSAELFAD-- 41
           L  K +E    F+++   + Y                   +Y +  +   N  ++FA   
Sbjct: 71  LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130

Query: 42  --RAQASIKLQNF--------------------TEAVADANRAIELEPSMS-KAYWRKAT 78
             R Q  +KL+                      T    D   + +++  M  K +W    
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFW---- 186

Query: 79  ACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAEETGELQKQPLE 130
             + L+   + +  LE    L               +N+        AE    L+ +P E
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYE 244

Query: 131 TGPTNV------VSTNNVQPATNISS-----TEDVETVMDVSNEAAMAAPARPKYRHEFY 179
               N       V       A N+S      T   + V D  + A     +   +     
Sbjct: 245 ----NCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ-VTDFLSAATTTHISLDHHSMTLT 299

Query: 180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSI-DVPGEEAYHFQPRLFGKIIPAKCR-- 236
             P+E V ++  K               L     D+P  E     PR    II    R  
Sbjct: 300 --PDE-VKSLLLK--------------YLDCRPQDLP-REVLTTNPRRLS-IIAESIRDG 340

Query: 237 -----------YEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVN-PPSVSGSPRPTY 284
                       + L+T +E  L   EP ++  + F + +V P   + P  +        
Sbjct: 341 LATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-FDRLSVFPPSAHIPTILLS------ 393

Query: 285 PSSKPTRVDWDKLEAQVKKEEKEEKLDGDAALNKFFQE-------IYAD--ADEDTRRAM 335
                  + W  +           KL   + + K  +E       IY +     +   A+
Sbjct: 394 -------LIWFDVIKSD-VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYAL 445

Query: 336 KKSFVES 342
            +S V+ 
Sbjct: 446 HRSIVDH 452

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 4e-04
 Identities = 36/286 (12%), Positives = 79/286 (27%), Gaps = 95/286 (33%)

Query: 6   EKKAKEAFIDDYFELAY-DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
             + K   +  Y +    DL  + +  +P    + A+       +++             
Sbjct: 300 PDEVKSLLLK-YLDCRPQDLPREVLTTNPRRLSIIAES------IRDG------------ 340

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNL-IKECEERIAEET 121
              +     W+    C KL      + +L     L P + R  F  L +      I    
Sbjct: 341 --LATWD-NWKHVN-CDKLTT--IIESSLN---VLEPAEYRKMFDRLSVFPPSAHI---- 387

Query: 122 GELQKQPLETGPTNVVST--NNVQPATNISSTEDVETVMDVSNEAAMAA--PARPKYR-H 176
                      PT ++S    +           DV  V++  ++ ++    P        
Sbjct: 388 -----------PTILLSLIWFD-------VIKSDVMVVVNKLHKYSLVEKQPKESTISIP 429

Query: 177 EFY---QKPEEVVVTVFAKGIPAKNVTVDF-GEQILSVSID------VPGEEAYHFQ--- 223
             Y   +   E    +    +   N+   F  + ++   +D      +     +H +   
Sbjct: 430 SIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHI----GHHLKNIE 485

Query: 224 --------PRLF-------GKII----PAKCRYEVLSTKVEIRLAK 250
                     +F        KI            +L+T  +++  K
Sbjct: 486 HPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYK 531

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 65.3 bits (160), Expect = 6e-12
 Identities = 16/87 (18%), Positives = 30/87 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A + Y  A+ + P+  + + + A A +   +   AV     A++  P +        
Sbjct: 83  LQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLG 142

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                L   E AK    K     P  +
Sbjct: 143 NLLKALGRLEEAKACYLKAIETQPNFA 169

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.9 bits (159), Expect = 9e-12
 Identities = 17/86 (19%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + +    + AI+ +P  AE +++      +     EA+     A+ L+P     Y   A
Sbjct: 49  LDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLA 108

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A +   + E A  A        P  
Sbjct: 109 AALVAAGDMEGAVQAYVSALQYNPDL 134

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 64.1 bits (157), Expect = 2e-11
 Identities = 18/84 (21%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A
Sbjct: 287 VAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLA 346

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +   +  + + A +  ++   ++P
Sbjct: 347 SVLQQQGKLQEALMHYKEAIRISP 370

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 63.3 bits (155), Expect = 2e-11
 Identities = 23/84 (27%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  +      A+        L P
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCP 302

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 62.2 bits (152), Expect = 6e-11
 Identities = 20/87 (22%), Positives = 35/87 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +AIE  PN A  +++             A+    +A+ L+P+   AY    
Sbjct: 151 LEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLG 210

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +   ++ A  A  +  SL+P  +
Sbjct: 211 NVLKEARIFDRAVAAYLRALSLSPNHA 237

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.8 bits (151), Expect = 9e-11
 Identities = 21/84 (25%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y  A++ +P+   + +D       L    EA A   +AIE +P+ + A+    
Sbjct: 117 MEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLG 176

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  E   A    EK  +L P
Sbjct: 177 CVFNAQGEIWLAIHHFEKAVTLDP 200

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 17/86 (19%), Positives = 33/86 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA   + +A+ + PN  + + +      + + F  AVA   RA+ L P+ +  +   A
Sbjct: 185 IWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLA 244

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +    + A     +   L P  
Sbjct: 245 CVYYEQGLIDLAIDTYRRAIELQPHF 270

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 61.4 bits (150), Expect = 1e-10
 Identities = 21/87 (24%), Positives = 37/87 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA D Y +AIE+ P+  + + + A A  +  +  EA    N A+ L P+ + +    A
Sbjct: 253 IDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLA 312

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +    E A     K   + P  +
Sbjct: 313 NIKREQGNIEEAVRLYRKALEVFPEFA 339

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 60.2 bits (147), Expect = 3e-10
 Identities = 13/86 (15%), Positives = 28/86 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           FE A     Q     P++  +    +    + +    +   +  AI+  P +++AY    
Sbjct: 15  FEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLG 74

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
               +  + + A         L P  
Sbjct: 75  NVYKERGQLQEAIEHYRHALRLKPDF 100

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 57.2 bits (139), Expect = 3e-09
 Identities = 16/68 (23%), Positives = 30/68 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLEE 85
               ++++
Sbjct: 381 NTLKEMQD 388

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 41.8 bits (99), Expect = 2e-04
 Identities = 6/63 (9%), Positives = 16/63 (25%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGD 103
           P  
Sbjct: 64  PLL 66

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2 Length = 125

 Score = 61.1 bits (148), Expect = 7e-12
 Identities = 23/145 (15%), Positives = 53/145 (36%), Gaps = 30/145 (20%)

Query: 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVS-IDVPGEEAYHFQPRLFGKIIPAKCRY 237
           Y + + V +    +   +K+V V+F +  L+ S +       +  +  LF  I P   ++
Sbjct: 9   YDRRDYVFIEFCVED--SKDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKH 66

Query: 238 EVLSTKVEIRLAKAEPIQ-WSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 296
           +     +   L K E  Q W  L   +                 +  + S     VD++ 
Sbjct: 67  KRTDRSILCCLRKGESGQSWPRLTKERA----------------KLNWLS-----VDFNN 105

Query: 297 LEAQVKKEEKEEKLDGDAALNKFFQ 321
                 K+ +++  +  +  ++F +
Sbjct: 106 W-----KDWEDDSDEDMSNFDRFSE 125

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 65.2 bits (159), Expect = 1e-11
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 88  VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 147

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 148 GGKQALETVQALLPVLCQAHGLTPEQ 173

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.8 bits (158), Expect = 1e-11
 Identities = 12/86 (13%), Positives = 21/86 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 394 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 453

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE         +   +    D
Sbjct: 454 GGRPALESIVAQLSRPDPALAALTND 479

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 64.4 bits (157), Expect = 1e-11
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 292 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHD 351

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 352 GGKQALETVQRLLPVLCQAHGLTPEQV 378

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 63.6 bits (155), Expect = 3e-11
 Identities = 14/84 (16%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 360 VQRLLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPEQVVAIASHD 419

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 420 GGKQALETVQRLLPVLCQAHGLTP 443

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 62.8 bits (153), Expect = 5e-11
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A    +
Sbjct: 224 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNS 283

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 284 GGKQALETVQRLLPVLCQAHGLTPQQ 309

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 326 VQRLLPVLCQAHGLTPQQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPEQVVAIASNG 385

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 386 GGKQALETVQRLLPVLCQAHGLTPEQV 412

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.7 bits (150), Expect = 1e-10
 Identities = 14/87 (16%), Positives = 23/87 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 156 VQALLPVLCQAHGLTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 215

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
                LE  +     L +   L P   
Sbjct: 216 GGKQALETVQRLLPVLCQAHGLTPQQV 242

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 61.3 bits (149), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 190 VQRLLPVLCQAHGLTPQQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 249

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 250 GGKQALETVQRLLPVLCQAHGLTPQQ 275

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.9 bits (148), Expect = 2e-10
 Identities = 14/86 (16%), Positives = 24/86 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A  +     L+     +    +A  L P    A     
Sbjct: 258 VQRLLPVLCQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGLTPQQVVAIASNG 317

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 318 GGKQALETVQRLLPVLCQAHGLTPQQ 343

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 60.5 bits (147), Expect = 3e-10
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 122 VQRLLPVLCQAHGLTPEQVVAIASHDGGKQALETVQALLPVLCQAHGLTPEQVVAIASNG 181

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 182 GGKQALETVQRLLPVLCQAHGLTPQQ 207

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 56.3 bits (136), Expect = 6e-09
 Identities = 13/81 (16%), Positives = 21/81 (25%)

Query: 24  LYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL 83
           L    + ++P      A        L+     +    +A  L P    A          L
Sbjct: 60  LTGAPLNLTPEQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPQQVVAIASHDGGKQAL 119

Query: 84  EEYETAKVALEKGASLAPGDS 104
           E  +     L +   L P   
Sbjct: 120 ETVQRLLPVLCQAHGLTPEQV 140

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 46.7 bits (111), Expect = 7e-06
 Identities = 13/85 (15%), Positives = 22/85 (25%)

Query: 19  ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT 78
            +A +L    +++        A R   +          A     + L P    A      
Sbjct: 21  TVAGELRGPPLQLDTGQLLKIAKRGGVTAVEAVHAWRNALTGAPLNLTPEQVVAIASHDG 80

Query: 79  ACMKLEEYETAKVALEKGASLAPGD 103
               LE  +     L +   L P  
Sbjct: 81  GKQALETVQRLLPVLCQAHGLTPQQ 105

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 59.4 bits (145), Expect = 2e-11
 Identities = 20/88 (22%), Positives = 36/88 (40%), Gaps = 2/88 (2%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--SMSKAYWR 75
           +  + DL+ +AI++ P  ++ +  + +A   L+ + EAV   N  I +         +  
Sbjct: 22  YTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA 81

Query: 76  KATACMKLEEYETAKVALEKGASLAPGD 103
           KA A   +E  E      E  A L    
Sbjct: 82  KADALRYIEGKEVEAEIAEARAKLEHHH 109

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} Length = 112

 Score = 49.0 bits (118), Expect = 1e-07
 Identities = 17/71 (23%), Positives = 29/71 (40%)

Query: 31  ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK 90
           +   + E +           N+TE++    +AI+L+P  SK +  K  A   LE YE A 
Sbjct: 1   MVDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAV 60

Query: 91  VALEKGASLAP 101
                  ++  
Sbjct: 61  DCYNYVINVIE 71

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 59.9 bits (145), Expect = 3e-11
 Identities = 13/110 (11%), Positives = 31/110 (28%)

Query: 5   LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE 64
           L   A   +    +E A+ ++     +    +  F         +  +  A+   +    
Sbjct: 24  LYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           ++    +  +  A   ++  E   A+  L     L      F  L     
Sbjct: 84  MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELSTRVS 133

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 54.9 bits (132), Expect = 2e-09
 Identities = 16/96 (16%), Positives = 31/96 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                   +   EIS ++ E     A    +   + +A         L+   S+ +    
Sbjct: 3   LGSGGGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLG 62

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
                + +Y+ A  +   GA +   + RF     EC
Sbjct: 63  ACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAEC 98

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* Length = 148

 Score = 41.4 bits (97), Expect = 8e-05
 Identities = 13/73 (17%), Positives = 23/73 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA   YS    +           A+  ++     EA +    A EL  +  +      
Sbjct: 71  YDLAIHSYSYGAVMDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXELST 130

Query: 78  TACMKLEEYETAK 90
                LE  +  K
Sbjct: 131 RVSSMLEAIKLKK 143

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 62.9 bits (153), Expect = 5e-11
 Identities = 18/107 (16%), Positives = 43/107 (40%), Gaps = 2/107 (1%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
              + A   ++F+ A  L  +        A  +A+   A  KL+ +  A+   N+ + L 
Sbjct: 489 SDMQTA--INHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS 546

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
            + +  +   A   +  +    A   L +  +++P +   ++L+K  
Sbjct: 547 TNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRA 593

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 59.5 bits (144), Expect = 7e-10
 Identities = 16/94 (17%), Positives = 31/94 (32%), Gaps = 7/94 (7%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMS 70
             LA +    +  +      L  +    +    +   A+     A+ L           +
Sbjct: 457 ILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWA 516

Query: 71  KAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +     A  KL+ Y+ A  AL +G  L+  D+
Sbjct: 517 ATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDA 550

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 58.7 bits (142), Expect = 1e-09
 Identities = 9/84 (10%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F     + ++ +EI P + +++     +  +     +    +N  ++  P  +  +    
Sbjct: 321 FIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVG 380

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + + +   A+    K +++ P
Sbjct: 381 IYYLCVNKISEARRYFSKSSTMDP 404

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.8 bits (137), Expect = 5e-09
 Identities = 14/86 (16%), Positives = 31/86 (36%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
               Y + +  ++  P  A  +       + +   +EA    +++  ++P    A+   A
Sbjct: 355 KNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFA 414

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            +     E++ A  A    A L  G 
Sbjct: 415 HSFAIEGEHDQAISAYTTAARLFQGT 440

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 56.0 bits (135), Expect = 1e-08
 Identities = 14/88 (15%), Positives = 26/88 (29%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +S++  + P     +   A +        +A++    A  L       Y    
Sbjct: 389 ISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLG 448

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
              M+L     A   L+   +L   D  
Sbjct: 449 MQHMQLGNILLANEYLQSSYALFQYDPL 476

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 54.8 bits (132), Expect = 2e-08
 Identities = 10/84 (11%), Positives = 21/84 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y+ A  +   +   +       ++L N   A      +  L            
Sbjct: 423 HDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELG 482

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                  + +TA    +    L  
Sbjct: 483 VVAFNKSDMQTAINHFQNALLLVK 506

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 51.0 bits (122), Expect = 4e-07
 Identities = 15/86 (17%), Positives = 28/86 (32%), Gaps = 1/86 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           D    A D Y  +I     S++L   +A        F + +A   + +E++P     Y  
Sbjct: 286 DELRRAED-YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPL 344

Query: 76  KATACMKLEEYETAKVALEKGASLAP 101
              +  +  E     +         P
Sbjct: 345 HLASLHESGEKNKLYLISNDLVDRHP 370

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 60.8 bits (148), Expect = 1e-10
 Identities = 21/86 (24%), Positives = 36/86 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA + +SQA+ I P+  E+F        +  NF  A    +  +EL+P+ + A+  + 
Sbjct: 59  RALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRG 118

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
            A       + A+  L       P D
Sbjct: 119 IALYYGGRDKLAQDDLLAFYQDDPND 144

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 55.4 bits (134), Expect = 6e-09
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ AY+ +   +E+ P       +R  A         A  D     + +P+         
Sbjct: 93  FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPNDPFRSLWLY 152

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  KL+E + AK  L++    + 
Sbjct: 153 LAEQKLDEKQ-AKEVLKQHFEKSD 175

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 53.1 bits (128), Expect = 3e-08
 Identities = 15/88 (17%), Positives = 29/88 (32%), Gaps = 4/88 (4%)

Query: 18  FELAYDLYSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
            E+      Q +          A+L  +R      L     A  D ++A+ + P M + +
Sbjct: 21  QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVF 80

Query: 74  WRKATACMKLEEYETAKVALEKGASLAP 101
                   +   ++ A  A +    L P
Sbjct: 81  NYLGIYLTQAGNFDAAYEAFDSVLELDP 108

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 52.7 bits (127), Expect = 5e-08
 Identities = 7/78 (8%), Positives = 21/78 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E      +    ++ + +E      +  + L +   A A    A+         +    
Sbjct: 197 MERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYAL 256

Query: 78  TACMKLEEYETAKVALEK 95
                L + +      ++
Sbjct: 257 LELSLLGQDQDDLAESDQ 274

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 Length = 275

 Score = 46.1 bits (110), Expect = 6e-06
 Identities = 11/86 (12%), Positives = 25/86 (29%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSMSKAYWRKA 77
           A ++  Q  E S      +         +          ADA     L   +S+  +   
Sbjct: 163 AKEVLKQHFEKSDKEQWGWNIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLG 222

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
              + L + ++A    +   +    +
Sbjct: 223 KYYLSLGDLDSATALFKLAVANNVHN 248

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.4 bits (149), Expect = 1e-10
 Identities = 19/124 (15%), Positives = 34/124 (27%), Gaps = 5/124 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                    + + + P   E  A   +     Q   EA     +A +  P          
Sbjct: 39  TTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLG 98

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR-FTNLI----KECEERIAEETGELQKQPLETG 132
            A     + E A  A  +   L P +      L+    + C+ R  +      +  +  G
Sbjct: 99  HALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158

Query: 133 PTNV 136
              V
Sbjct: 159 VGAV 162

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 61.0 bits (148), Expect = 2e-10
 Identities = 15/86 (17%), Positives = 27/86 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                     A+   P     +   A A + + + T       R + L P   +A  R  
Sbjct: 5   GPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLG 64

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                 + +  A V L++ +  AP  
Sbjct: 65  RVRWTQQRHAEAAVLLQQASDAAPEH 90

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 61.6 bits (149), Expect = 1e-10
 Identities = 15/105 (14%), Positives = 39/105 (37%), Gaps = 1/105 (0%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT-EAVADANRAIE 64
           +   K+  + +  E       + +  +   A+    + +A     +++ EA    ++A++
Sbjct: 72  DAGRKQQDVQEEMEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK 131

Query: 65  LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL 109
           LEP + +A+ +      K  +  +A        +         NL
Sbjct: 132 LEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKNKVSLQNL 176

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 48.9 bits (116), Expect = 1e-06
 Identities = 13/75 (17%), Positives = 31/75 (41%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           AY    +    + ++ +L  +RA      +++ EA+   ++A  L+P+  +   R+    
Sbjct: 243 AYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLL 302

Query: 81  MKLEEYETAKVALEK 95
             L    +   +  K
Sbjct: 303 EFLSRLTSLLESKGK 317

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 46.2 bits (109), Expect = 1e-05
 Identities = 12/107 (11%), Positives = 31/107 (28%), Gaps = 11/107 (10%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAE--------LFADRAQASIKLQNFTEAVAD 58
           +         +   +      A+++                +         +   +A++ 
Sbjct: 184 QTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSA 243

Query: 59  ANRAIELEPSMSK---AYWRKATACMKLEEYETAKVALEKGASLAPG 102
             +A +++   S     +  +AT     E Y  A     + A+L P 
Sbjct: 244 YAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPA 290

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} Length = 474

 Score = 45.8 bits (108), Expect = 1e-05
 Identities = 14/85 (16%), Positives = 31/85 (36%), Gaps = 1/85 (1%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           DY   A  L S+A+++ P   E +    +   K  + T A    + A+    +   +   
Sbjct: 117 DYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQN 175

Query: 76  KATACMKLEEYETAKVALEKGASLA 100
            +    +L+     + +     S+ 
Sbjct: 176 LSMVLRQLQTDSGDEHSRHVMDSVR 200

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.5 bits (145), Expect = 2e-10
 Identities = 16/84 (19%), Positives = 34/84 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A   Y +A+E+  ++A  +       +  + + EA     +A+         ++   
Sbjct: 73  LERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLG 132

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           T  +KLE+ + A   L++   L  
Sbjct: 133 TVLVKLEQPKLALPYLQRAVELNE 156

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 59.1 bits (144), Expect = 2e-10
 Identities = 21/84 (25%), Positives = 39/84 (46%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +E A + +++AIE +   A  + + A     +     A+A  ++A+EL+ S + AY+   
Sbjct: 39  YEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAG 98

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +  E Y+ AK   EK      
Sbjct: 99  NVYVVKEMYKEAKDMFEKALRAGM 122

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 58.3 bits (142), Expect = 6e-10
 Identities = 15/84 (17%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D++ +A+     + +LF       +KL+    A+    RA+EL  + ++A ++  
Sbjct: 107 YKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFG 166

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                    + A           P
Sbjct: 167 MCLANEGMLDEALSQFAAVTEQDP 190

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 56.4 bits (137), Expect = 2e-09
 Identities = 17/84 (20%), Positives = 30/84 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +LA     +A+E++ N  E                EA++      E +P  + A++   
Sbjct: 141 PKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAG 200

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E  E A   L+K   + P
Sbjct: 201 VTYAYKENREKALEMLDKAIDIQP 224

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 53.7 bits (130), Expect = 2e-08
 Identities = 12/81 (14%), Positives = 26/81 (32%), Gaps = 4/81 (4%)

Query: 25  YSQAIEISPNSAELFADRAQA----SIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           +  +  + P  + + +           +  ++ +A     +AIE     +  Y   A   
Sbjct: 8   HHHSSGLVPRGSHMASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLL 67

Query: 81  MKLEEYETAKVALEKGASLAP 101
             + E E A    +K   L  
Sbjct: 68  SSVNELERALAFYDKALELDS 88

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 Length = 243

 Score = 51.4 bits (124), Expect = 1e-07
 Identities = 12/69 (17%), Positives = 26/69 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   ++   E  P  A+ F +        +N  +A+   ++AI+++P    A   K 
Sbjct: 175 LDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKK 234

Query: 78  TACMKLEEY 86
                   +
Sbjct: 235 LLGHHHHHH 243

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.0 bits (146), Expect = 3e-10
 Identities = 17/96 (17%), Positives = 34/96 (35%), Gaps = 9/96 (9%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK------ 71
            +LA   +SQA+ I+P    +  +    + +   +  A      A+E   ++        
Sbjct: 175 SKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDK 234

Query: 72  ---AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
                      C KL++Y  A     +   L P ++
Sbjct: 235 WEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNA 270

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 56.9 bits (138), Expect = 3e-09
 Identities = 17/105 (16%), Positives = 33/105 (31%), Gaps = 9/105 (8%)

Query: 18  FELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
           ++ A   +  A+E                L  +      KL+ + EA+    +A+ L P 
Sbjct: 209 WKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQ 268

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC 113
            +  Y         +  +E A         L   D+    ++  C
Sbjct: 269 NASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHC 313

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 13/91 (14%), Positives = 25/91 (27%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           +    E A    S+A  +       +     +        +A+A    A +L        
Sbjct: 103 VGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPM 162

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
                        + A+    +  S+AP D 
Sbjct: 163 LYIGLEYGLTNNSKLAERFFSQALSIAPEDP 193

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 13/77 (16%), Positives = 27/77 (35%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A D + QA+ + P +A  ++        + NF  AV   + A+ L    + +     
Sbjct: 252 YAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG 311

Query: 78  TACMKLEEYETAKVALE 94
                      A +  +
Sbjct: 312 HCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 53.8 bits (130), Expect = 3e-08
 Identities = 10/87 (11%), Positives = 21/87 (24%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y  A ++                   N   A    ++A+ + P          
Sbjct: 141 HDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVG 200

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               +  E++TA+              
Sbjct: 201 VVAFQNGEWKTAEKWFLDALEKIKAIG 227

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 50.4 bits (121), Expect = 4e-07
 Identities = 17/85 (20%), Positives = 35/85 (41%), Gaps = 1/85 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F++ Y L S  +E  P  A          ++L    E    +++ ++L PS   +++   
Sbjct: 38  FKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVG 97

Query: 78  TACMKL-EEYETAKVALEKGASLAP 101
              + +  + E A+  L K  +L  
Sbjct: 98  CYYLMVGHKNEHARRYLSKATTLEK 122

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 46.1 bits (110), Expect = 1e-05
 Identities = 9/85 (10%), Positives = 28/85 (32%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           Y + +  +  ++++    + ++    A+      +F       +  +E +P  +      
Sbjct: 3   YNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVH 62

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
               ++L +         K   L P
Sbjct: 63  IGTLVELNKANELFYLSHKLVDLYP 87

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 57.1 bits (138), Expect = 4e-10
 Identities = 12/98 (12%), Positives = 26/98 (26%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
             A + +     E A   +         + +     A      + F +A      A  L 
Sbjct: 41  SYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG 100

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
            +     +      ++L+    AK   E     +  + 
Sbjct: 101 KNDYTPVFHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 51.3 bits (123), Expect = 4e-08
 Identities = 11/102 (10%), Positives = 22/102 (21%), Gaps = 1/102 (0%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI 63
             E ++    + D    +         I  +  +     A          EA        
Sbjct: 5   ITENESISTAVIDAIN-SGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLC 63

Query: 64  ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
             +          A      E+++ A        +L   D  
Sbjct: 64  IYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYT 105

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 60.2 bits (145), Expect = 5e-10
 Identities = 21/94 (22%), Positives = 39/94 (41%), Gaps = 1/94 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y +AI ISP  A+ +++      ++Q+   A+    RAI++ P+ + A+   A
Sbjct: 59  LQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLA 118

Query: 78  TACMKLEEYETAKVALEKGASLAPG-DSRFTNLI 110
           +          A  +      L P     + NL 
Sbjct: 119 SIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 57.9 bits (139), Expect = 2e-09
 Identities = 18/87 (20%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 25  IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 84

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
               ++++ + A     +   + P  +
Sbjct: 85  NTLKEMQDVQGALQCYTRAIQINPAFA 111

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 52.1 bits (124), Expect = 2e-07
 Identities = 20/84 (23%), Positives = 38/84 (45%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A   Y++AI+I+P  A+  ++ A       N  EA+A    A++L+P    AY   A
Sbjct: 93  VQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLA 152

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                + ++      ++K  S+  
Sbjct: 153 HCLQIVCDWTDYDERMKKLVSIVA 176

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 45.2 bits (106), Expect = 3e-05
 Identities = 14/72 (19%), Positives = 31/72 (43%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+   +  + + A +
Sbjct: 5   CPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALM 64

Query: 92  ALEKGASLAPGD 103
             ++   ++P  
Sbjct: 65  HYKEAIRISPTF 76

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 56.7 bits (138), Expect = 8e-10
 Identities = 14/84 (16%), Positives = 27/84 (32%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A  L  Q  +      ++      A +K            R++   P   K      
Sbjct: 24  YSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLG 83

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              +++++Y+ A   L K A   P
Sbjct: 84  LTYVQVQKYDLAVPLLIKVAEANP 107

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 53.6 bits (130), Expect = 1e-08
 Identities = 21/87 (24%), Positives = 36/87 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++LA  L  +  E +P +  +      A   L  F EA+     A+ L P+  K +   A
Sbjct: 92  YDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIA 151

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +  ++  +E A    +K   L  G S
Sbjct: 152 FSYEQMGRHEEALPHFKKANELDEGAS 178

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 52.5 bits (127), Expect = 2e-08
 Identities = 13/84 (15%), Positives = 33/84 (39%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +   +L  +++  +P++ ++        +++Q +  AV    +  E  P      +R  
Sbjct: 58  VDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLG 117

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A   L  ++ A  + +    L P
Sbjct: 118 VALDNLGRFDEAIDSFKIALGLRP 141

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 42.8 bits (102), Expect = 4e-05
 Identities = 13/56 (23%), Positives = 25/56 (44%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           F+ A D +  A+ + PN  ++    A +  ++    EA+    +A EL+   S   
Sbjct: 126 FDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGASVEL 181

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A Length = 186

 Score = 40.1 bits (95), Expect = 3e-04
 Identities = 10/69 (14%), Positives = 23/69 (33%)

Query: 33  PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVA 92
                 + D+  +  K   +++AV    +  + +            A +K    +     
Sbjct: 5   DIRQVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTEL 64

Query: 93  LEKGASLAP 101
           LE+  + AP
Sbjct: 65  LERSLADAP 73

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 58.5 bits (142), Expect = 9e-10
 Identities = 17/87 (19%), Positives = 38/87 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A     +A+E+ P+ A+L+              EA+   NRA+++ P   +  +  A
Sbjct: 188 YDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMA 247

Query: 78  TACMKLEEYETAKVALEKGASLAPGDS 104
            +   + +Y+ A   L +   +  G +
Sbjct: 248 VSYSNMSQYDLAAKQLVRAIYMQVGGT 274

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 55.0 bits (133), Expect = 1e-08
 Identities = 12/84 (14%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    + +P   E +        + +    A+   N A  L+P     +   A
Sbjct: 37  LAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 96

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 97  VSHTNEHNANAALASLRAWLLSQP 120

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 21/88 (23%), Positives = 36/88 (40%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +     L   A+E++PN A+L A          N+  A A+  RA+EL P  ++ + +  
Sbjct: 154 YRECRTLLHAALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLG 213

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                    + A  A  +   + PG  R
Sbjct: 214 ATLANGNRPQEALDAYNRALDINPGYVR 241

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.8 bits (117), Expect = 1e-06
 Identities = 16/101 (15%), Positives = 26/101 (25%), Gaps = 15/101 (14%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             LA    + A  + P    + A  A +     N   A+A     +  +P   +      
Sbjct: 71  DGLAIIALNHARMLDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNL 130

Query: 78  TAC---------------MKLEEYETAKVALEKGASLAPGD 103
            A                    EY   +  L     + P D
Sbjct: 131 QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPND 171

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 1e-06
 Identities = 15/102 (14%), Positives = 30/102 (29%), Gaps = 15/102 (14%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASI---------------KLQNFTEAVADANR 61
               A       +   P   +L +   QA +                   + E     + 
Sbjct: 104 NANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHA 163

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+E+ P+ ++ +            Y++A   L +   L P D
Sbjct: 164 ALEMNPNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDD 205

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 16/79 (20%), Positives = 25/79 (31%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y           E   +   + +KL N  EA        +  P   +A+        + E
Sbjct: 10  YPFEANNPYMYHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENE 69

Query: 85  EYETAKVALEKGASLAPGD 103
           +   A +AL     L P D
Sbjct: 70  KDGLAIIALNHARMLDPKD 88

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 12/77 (15%), Positives = 31/77 (40%), Gaps = 1/77 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A D Y++A++I+P    +  + A +   +  +  A     RAI ++   +      +
Sbjct: 222 PQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEAS 281

Query: 78  TACMKLEEYETAKVALE 94
                   ++  ++ L 
Sbjct: 282 RE-ATRSMWDFFRMLLN 297

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 20/114 (17%), Positives = 42/114 (36%), Gaps = 4/114 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQA---SIKLQNFTEAVADANRAIELEPSMSKAYW 74
           +  +   Y QA+++   +AEL+A  A             +  A  ++A+ L+ +   A  
Sbjct: 60  YSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALM 119

Query: 75  RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE-RIAEETGELQKQ 127
             A+       Y  A    +K   L       T L++     ++ +   +L+  
Sbjct: 120 LLASDAFMQANYAQAIELWQKVMDLNSPRINRTQLVESINMAKLLQRRSDLEHH 173

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} Length = 177

 Score = 41.0 bits (96), Expect = 2e-04
 Identities = 12/91 (13%), Positives = 33/91 (36%), Gaps = 3/91 (3%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E         I  +P ++E +A   +  +   +++ ++    +A++L    ++ Y   A
Sbjct: 26  PEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALA 85

Query: 78  TACMKLEEY---ETAKVALEKGASLAPGDSR 105
           T              +  ++K  +L   +  
Sbjct: 86  TVLYYQASQHMTAQTRAMIDKALALDSNEIT 116

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 58.1 bits (140), Expect = 3e-09
 Identities = 14/84 (16%), Positives = 24/84 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 310 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 369

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 370 GGKQALETVQRLLPVLCQAHGLTP 393

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.3 bits (138), Expect = 4e-09
 Identities = 19/138 (13%), Positives = 38/138 (27%), Gaps = 2/138 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 276 VQRLLPVLCQAHGLTPDQVVAIASHGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHD 335

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPTN 135
                LE  +     L +   L P       +N   +      +    +  Q     P  
Sbjct: 336 GGKQALETVQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQ 395

Query: 136 VVSTNNVQPATNISSTED 153
           VV+  +      + + + 
Sbjct: 396 VVAIASNGGKQALETVQR 413

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 57.0 bits (137), Expect = 5e-09
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 208 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQVVAIASNI 267

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 268 GGKQALETVQRLLPVLCQAHGLTPDQ 293

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.4 bits (133), Expect = 2e-08
 Identities = 14/86 (16%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  + P+     A        L+     +    +A  L P    A     
Sbjct: 242 MQRLLPVLCQAHGLPPDQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPDQVVAIASHG 301

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 302 GGKQALETVQRLLPVLCQAHGLTPDQ 327

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 55.0 bits (132), Expect = 2e-08
 Identities = 12/86 (13%), Positives = 22/86 (25%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  Q   ++P      A        L+   + +    +A  L P    A     
Sbjct: 445 VQRLLPVLCQTHGLTPAQVVAIASHDGGKQALETVQQLLPVLCQAHGLTPDQVVAIASNI 504

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L   +     L +   L P  
Sbjct: 505 GGKQALATVQRLLPVLCQAHGLTPDQ 530

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.7 bits (131), Expect = 3e-08
 Identities = 13/84 (15%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P      A        L+     +    +A  L P    A     
Sbjct: 615 VQRLLPVLCQAHGLTPAQVVAIASHDGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 674

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L  
Sbjct: 675 GGKQALETVQRLLPVLCQAHGLTQ 698

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 54.3 bits (130), Expect = 4e-08
 Identities = 13/84 (15%), Positives = 23/84 (27%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L      A     
Sbjct: 649 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTQEQVVAIASNN 708

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                LE  +     L +   L P
Sbjct: 709 GGKQALETVQRLLPVLCQAHGLTP 732

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 53.9 bits (129), Expect = 6e-08
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 2/126 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 513 VQRLLPVLCQAHGLTPDQVVAIASNGGGKQALETVQRLLPVLCQAHGLTPDQVVAIASNG 572

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPTN 135
                LE  +     L +   L         +N+  +      +    +  Q     P  
Sbjct: 573 GGKQALETVQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQ 632

Query: 136 VVSTNN 141
           VV+  +
Sbjct: 633 VVAIAS 638

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 16/98 (16%), Positives = 26/98 (26%), Gaps = 4/98 (4%)

Query: 6   EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL 65
              A EA +         L    + ++P      A        L+     +    +A  L
Sbjct: 166 GVTAMEA-VHAS---RNALTGAPLNLTPAQVVAIASNNGGKQALETVQRLLPVLCQAHGL 221

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD 103
            P+   A          LE  +     L +   L P  
Sbjct: 222 TPAQVVAIASHDGGKQALETMQRLLPVLCQAHGLPPDQ 259

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 17/129 (13%), Positives = 33/129 (25%), Gaps = 2/129 (1%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  QA  ++       A        L+     +    +A  L P    A    
Sbjct: 682 TVQRLLPVLCQAHGLTQEQVVAIASNNGGKQALETVQRLLPVLCQAHGLTPDQVVAIASN 741

Query: 77  ATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEETGELQKQPLETGPT 134
                 LE  +     L +   L P       +N+  +      +    +  Q       
Sbjct: 742 GGGKQALETVQRLLPVLCQAHGLTPAQVVAIASNIGGKQALETVQRLLPVLCQDHGLTLA 801

Query: 135 NVVSTNNVQ 143
            VV+  +  
Sbjct: 802 QVVAIASNI 810

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 52.0 bits (124), Expect = 2e-07
 Identities = 12/82 (14%), Positives = 23/82 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +   L P+   A     
Sbjct: 411 VQRLLPVLCQAHGLTPDQVVAIASHDGGKQALETVQRLLPVLCQTHGLTPAQVVAIASHD 470

Query: 78  TACMKLEEYETAKVALEKGASL 99
                LE  +     L +   L
Sbjct: 471 GGKQALETVQQLLPVLCQAHGL 492

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 51.6 bits (123), Expect = 3e-07
 Identities = 13/86 (15%), Positives = 23/86 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++       A        L+     +    +A  L P+   A     
Sbjct: 581 VQRLLPVLCQAHGLTQVQVVAIASNIGGKQALETVQRLLPVLCQAHGLTPAQVVAIASHD 640

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 641 GGKQALETVQRLLPVLCQAHGLTPDQ 666

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 50.4 bits (120), Expect = 6e-07
 Identities = 14/88 (15%), Positives = 23/88 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L      +    +A  L P    A     
Sbjct: 479 VQQLLPVLCQAHGLTPDQVVAIASNIGGKQALATVQRLLPVLCQAHGLTPDQVVAIASNG 538

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSR 105
                LE  +     L +   L P    
Sbjct: 539 GGKQALETVQRLLPVLCQAHGLTPDQVV 566

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 48.9 bits (116), Expect = 2e-06
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 1/86 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            +    +  QA  ++P+     A        L+     +    +A  L P    A     
Sbjct: 378 VQRLLPVLCQAHGLTPDQVVAIASNGGKQ-ALETVQRLLPVLCQAHGLTPDQVVAIASHD 436

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                LE  +     L +   L P  
Sbjct: 437 GGKQALETVQRLLPVLCQTHGLTPAQ 462

>3ugm_A TAL effector avrbs3/PTHA; TAL effector; 3.00A {Xanthomonas oryzae} Length = 1047

 Score = 40.8 bits (95), Expect = 6e-04
 Identities = 11/85 (12%), Positives = 20/85 (23%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             +    +  Q   ++       A        L+     +    +A  L      A    
Sbjct: 784 TVQRLLPVLCQDHGLTLAQVVAIASNIGGKQALETVQRLLPVLCQAHGLTQDQVVAIASN 843

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 LE  +     L +   L P
Sbjct: 844 IGGKQALETVQRLLPVLCQDHGLTP 868

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 57.0 bits (138), Expect = 3e-09
 Identities = 19/84 (22%), Positives = 32/84 (38%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F  A D ++ A+ + P    L+              EAV    RA+E++P   ++ +   
Sbjct: 229 FNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLG 288

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  Y  A        SL  
Sbjct: 289 ISCINLGAYREAVSNFLTALSLQR 312

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
             +       AI   P  AE +        + +N   A+    R +EL+P+  KA    A
Sbjct: 81  LPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +       + A  AL+      P
Sbjct: 141 VSYTNTSHQQDACEALKNWIKQNP 164

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 53.5 bits (129), Expect = 4e-08
 Identities = 19/109 (17%), Positives = 37/109 (33%), Gaps = 8/109 (7%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDL--------YSQAIEISPNSAELFADRAQASIKLQNF 52
           M  + E+ A+  +I +  E    +        Y    E          +     +K  + 
Sbjct: 22  MQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENPFKDWPGAFEEGLKRLKEGDL 81

Query: 53  TEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              +     AI  +P  ++A+        + E  + A VAL++   L P
Sbjct: 82  PVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQP 130

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 49.7 bits (119), Expect = 7e-07
 Identities = 10/78 (12%), Positives = 22/78 (28%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     + +E+ PN+ +     A +     +  +A       I+  P        K 
Sbjct: 115 EQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKK 174

Query: 78  TACMKLEEYETAKVALEK 95
            +         + V    
Sbjct: 175 GSPGLTRRMSKSPVDSSV 192

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 1e-05
 Identities = 11/99 (11%), Positives = 32/99 (32%), Gaps = 12/99 (12%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           + + A +     I+ +P    L  ++  +    +  +++  D++    ++    +A  + 
Sbjct: 148 HQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN 207

Query: 77  ------------ATACMKLEEYETAKVALEKGASLAPGD 103
                               E+  A  A     ++ P D
Sbjct: 208 GDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPED 246

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 19/107 (17%), Positives = 37/107 (34%), Gaps = 3/107 (2%)

Query: 2   ATDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVAD 58
           +  L ++  ++ +D    E   +LY +A   + +    +L             F  A+  
Sbjct: 176 SPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDA 235

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
            N A+ + P     + R        +  E A  A  +   + PG  R
Sbjct: 236 FNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIR 282

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 43.1 bits (102), Expect = 8e-05
 Identities = 15/62 (24%), Positives = 26/62 (41%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A + Y++A+EI P       +   + I L  + EAV++   A+ L+           
Sbjct: 263 SEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPH 322

Query: 78  TA 79
            A
Sbjct: 323 PA 324

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 52.4 bits (127), Expect = 9e-09
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 51  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 110

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 111 NAYYKQGDYDEAIEYYQKALELDP 134

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A Length = 136

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 24/84 (28%), Positives = 45/84 (53%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ P SAE + +   A  K  ++ EA+    +A+EL+P  ++A++   
Sbjct: 17  YDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLG 76

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 77  NAYYKQGDYDEAIEYYQKALELDP 100

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 53.2 bits (128), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 16/103 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI-ELEPSMSKAYWR- 75
              A   ++++I    + A  +  R     + + +  A+ D   A+ +L  +    Y   
Sbjct: 53  MTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKIL 112

Query: 76  --------------KATACMKLEEYETAKVALEKGASLAPGDS 104
                          A    K EE++ A+  L    S+     
Sbjct: 113 GLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR 155

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* Length = 213

 Score = 49.3 bits (118), Expect = 3e-07
 Identities = 20/108 (18%), Positives = 44/108 (40%), Gaps = 8/108 (7%)

Query: 20  LAYDL--YSQAIE----ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY 73
           LA D   +  A++    +    + +  +       L+N TEA     R+I  +  ++ AY
Sbjct: 15  LAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAY 74

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAE 119
           +++     + E+Y+ A   L++      G+    +  L  + +    E
Sbjct: 75  FQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACE 122

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 53.3 bits (129), Expect = 2e-08
 Identities = 17/84 (20%), Positives = 31/84 (36%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            + A     QA+ +     E+ +  A+  + +    EA+A   +A+E  P       R A
Sbjct: 134 RDKAEASLKQALALEDT-PEIRSALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYA 192

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
           +A +   + E A  A         
Sbjct: 193 SALLLKGKAEEAARAAALEHHHHH 216

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 6e-07
 Identities = 17/97 (17%), Positives = 33/97 (34%), Gaps = 11/97 (11%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A  L+ +A++ +P   E     A+  +KL     A+ +    +   P     Y   +
Sbjct: 21  YDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLS 80

Query: 78  TACMKLE-----------EYETAKVALEKGASLAPGD 103
            A + L              E A   L+    + P  
Sbjct: 81  EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRY 117

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 48.7 bits (117), Expect = 7e-07
 Identities = 18/84 (21%), Positives = 29/84 (34%), Gaps = 1/84 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  +   A  ++P  A L   R      L    +A A   +A+ LE +  +     A
Sbjct: 100 LEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDT-PEIRSALA 158

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
              + +   + A     K    AP
Sbjct: 159 ELYLSMGRLDEALAQYAKALEQAP 182

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} Length = 217

 Score = 47.9 bits (115), Expect = 1e-06
 Identities = 11/95 (11%), Positives = 29/95 (30%), Gaps = 11/95 (11%)

Query: 18  FELAYDLYSQAIEISPNSAE-----------LFADRAQASIKLQNFTEAVADANRAIELE 66
              A +     +  +P               L+              +A++    A  + 
Sbjct: 55  VNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN 114

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           P  +  + ++      L E + A+ +L++  +L  
Sbjct: 115 PRYAPLHLQRGLVYALLGERDKAEASLKQALALED 149

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 36/84 (42%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A D ++ A+ + PN   L+              EAVA   RA+EL+P   ++ +   
Sbjct: 233 YDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLG 292

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +C+ L  +  A     +  ++  
Sbjct: 293 ISCINLGAHREAVEHFLEALNMQR 316

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 52.3 bits (126), Expect = 9e-08
 Identities = 15/84 (17%), Positives = 26/84 (30%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A  L+  A++  P   E +        + +    A++   R +EL+P    A    A
Sbjct: 80  LPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALA 139

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A   L       P
Sbjct: 140 VSFTNESLQRQACEILRDWLRYTP 163

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 47.0 bits (112), Expect = 5e-06
 Identities = 11/99 (11%), Positives = 24/99 (24%), Gaps = 15/99 (15%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY---- 73
             LA     + +E+ P++       A +        +A       +   P+ +       
Sbjct: 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAE 173

Query: 74  -----------WRKATACMKLEEYETAKVALEKGASLAP 101
                       R   + +    +   K        L P
Sbjct: 174 EGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDP 212

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 46.2 bits (110), Expect = 8e-06
 Identities = 16/90 (17%), Positives = 31/90 (34%), Gaps = 2/90 (2%)

Query: 18  FELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           F    +L+  A+ + P S   ++             + +AV     A+ + P+    + +
Sbjct: 197 FLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNK 256

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR 105
                    + E A  A  +   L PG  R
Sbjct: 257 LGATLANGNQSEEAVAAYRRALELQPGYIR 286

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 13/71 (18%), Positives = 25/71 (35%), Gaps = 2/71 (2%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
           Y +A+E+ P       +   + I L    EAV     A+ ++                + 
Sbjct: 274 YRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENI- 332

Query: 85  EYETAKVALEK 95
            + T ++AL  
Sbjct: 333 -WSTLRLALSM 342

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 15/104 (14%), Positives = 27/104 (25%), Gaps = 17/104 (16%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQAS---------------IKLQNFTEAVADANR 61
               A ++    +  +P  A L     + +               +    F E       
Sbjct: 147 LQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLA 206

Query: 62  AIELEPSMSKA--YWRKATACMKLEEYETAKVALEKGASLAPGD 103
           A+ L+P+                  EY+ A        S+ P D
Sbjct: 207 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPND 250

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 53.0 bits (128), Expect = 3e-08
 Identities = 12/81 (14%), Positives = 30/81 (37%)

Query: 25  YSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE 84
             +  +    + + +       ++  N  +A     +A+E++PS + A+   A       
Sbjct: 26  PLKTDKGRDEARDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEM 85

Query: 85  EYETAKVALEKGASLAPGDSR 105
           E + A     K  +    ++R
Sbjct: 86  EPKLADEEYRKALASDSRNAR 106

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 51.5 bits (124), Expect = 1e-07
 Identities = 10/84 (11%), Positives = 29/84 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A + + +++ ++ N   +  + A    K + +  A    +   +     +++     
Sbjct: 157 PAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI 216

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
                 E+ +TA     +   L P
Sbjct: 217 RLAKVFEDRDTAASYGLQLKRLYP 240

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 50.0 bits (120), Expect = 3e-07
 Identities = 19/112 (16%), Positives = 42/112 (37%), Gaps = 8/112 (7%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
           +E AY    +A + +  P  + +F +    S++++   +A     +++ L  +       
Sbjct: 121 YEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALE 180

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEERIAEETGELQK 126
            A    K  EY  A+   +  A     ++R     I     R+A+   +   
Sbjct: 181 MADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGI-----RLAKVFEDRDT 227

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 45.3 bits (108), Expect = 1e-05
 Identities = 16/78 (20%), Positives = 29/78 (37%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A     +A+EI P+SA+  A  A           A  +  +A+  +   ++      
Sbjct: 53  TEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYG 112

Query: 78  TACMKLEEYETAKVALEK 95
               + + YE A   L +
Sbjct: 113 GFLYEQKRYEEAYQRLLE 130

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 50.5 bits (122), Expect = 3e-08
 Identities = 24/84 (28%), Positives = 47/84 (55%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A++   
Sbjct: 25  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLG 84

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            A  K  +Y+ A    +K   L P
Sbjct: 85  NAYYKQGDYDEAIEYYQKALELDP 108

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A Length = 125

 Score = 43.5 bits (104), Expect = 9e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 59  YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118

Query: 78  TACMKL 83
            A  K 
Sbjct: 119 NAKQKQ 124

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana} Length = 150

 Score = 51.1 bits (122), Expect = 4e-08
 Identities = 31/153 (20%), Positives = 55/153 (35%), Gaps = 28/153 (18%)

Query: 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSV-SIDVPGEEAYHFQPRLFGKIIPAKCRY 237
            Q+ ++V +TV      AK+++V    Q L   S      E + F   L+GKI+      
Sbjct: 10  AQRSDKVYLTVALPD--AKDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTEYR-K 66

Query: 238 EVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKL 297
            V    +   + K E   W+ L  S+          P +               VDW+K 
Sbjct: 67  NVGLRNIIFSIQKEERSWWTRLLKSEE------KPAPYIK--------------VDWNKW 106

Query: 298 EAQVKKEEKEEKLDGDAALNKFFQEIYADADED 330
                 E++E   +  +     F    +++ +D
Sbjct: 107 ----CDEDEEVNSETASDDESAFVNQDSESSDD 135

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 49.2 bits (118), Expect = 6e-08
 Identities = 14/70 (20%), Positives = 25/70 (35%)

Query: 32  SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKV 91
            P         AQ  +K  N + A+A     +E +P     Y+       +L+  + A  
Sbjct: 3   DPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAID 62

Query: 92  ALEKGASLAP 101
              +G  +A 
Sbjct: 63  TYAQGIEVAR 72

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 41.1 bits (97), Expect = 5e-05
 Identities = 12/72 (16%), Positives = 24/72 (33%), Gaps = 2/72 (2%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK- 76
             A  L+ + +E  P+    +    +   +L    +A+    + IE+            
Sbjct: 23 ASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSE 82

Query: 77 -ATACMKLEEYE 87
             A +K E  E
Sbjct: 83 LQDAKLKAEGLE 94

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 51.9 bits (124), Expect = 2e-07
 Identities = 19/91 (20%), Positives = 36/91 (39%), Gaps = 4/91 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA----NRAIELEPSMSKAY 73
            + A D   QAI ++P++  L    A    K++   E   +       A+E  P ++   
Sbjct: 191 SQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVL 250

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDS 104
              A    + +E + A   L+K     P ++
Sbjct: 251 RSAAKFYRRKDEPDKAIELLKKALEYIPNNA 281

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 49.9 bits (119), Expect = 6e-07
 Identities = 24/95 (25%), Positives = 38/95 (40%), Gaps = 7/95 (7%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT---EAVADANRAIELEPSMSKA 72
           +  E A   + +A+E  P + E  +  A AS +L N+     A+    +AI L P     
Sbjct: 152 NQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYL 211

Query: 73  YWRKATACMKL----EEYETAKVALEKGASLAPGD 103
               A    K+    EE    +  +E+    APG 
Sbjct: 212 KVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGV 246

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.1 bits (109), Expect = 1e-05
 Identities = 20/106 (18%), Positives = 35/106 (33%), Gaps = 19/106 (17%)

Query: 18  FELAYDLYSQAIEISPNSAEL-------------------FADRAQASIKLQNFTEAVAD 58
            + A +L  +A+E  PN+A L                             L+    AVA 
Sbjct: 263 PDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAH 322

Query: 59  ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
             +A E   ++ +     A+     ++YE A+   +K  S      
Sbjct: 323 LKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPV 368

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.4 bits (102), Expect = 8e-05
 Identities = 23/137 (16%), Positives = 44/137 (32%), Gaps = 12/137 (8%)

Query: 17  YFELAYDLYSQ-AIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAY 73
           Y +    +  + +      S EL  +     +K        A     +A+E +P   +  
Sbjct: 116 YVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFT 175

Query: 74  WRKATACMKLE---EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQ----- 125
              A A  +L+     + A   L +   L P +     L+     ++ EE  E       
Sbjct: 176 SGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKL 235

Query: 126 -KQPLETGPTNVVSTNN 141
            ++ LE  P       +
Sbjct: 236 VEEALEKAPGVTDVLRS 252

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 43.0 bits (101), Expect = 1e-04
 Identities = 16/121 (13%), Positives = 35/121 (28%), Gaps = 13/121 (10%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
              L  +A+E +P   ++    A+   +     +A+    +A+E  P+ +  + +     
Sbjct: 232 GEKLVEEALEKAPGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCC- 290

Query: 81  MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGELQKQPLETGPTNVVSTN 140
                Y      +           R      +  E I      L+K   E         +
Sbjct: 291 -----YRAKVFQVMNLRENGMYGKR------KLLELIGHAVAHLKK-ADEANDNLFRVCS 338

Query: 141 N 141
            
Sbjct: 339 I 339

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 42.6 bits (100), Expect = 2e-04
 Identities = 16/110 (14%), Positives = 38/110 (34%), Gaps = 5/110 (4%)

Query: 14  IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA- 72
           + +    A     +A E + N   + +  A        + EA     +    E +     
Sbjct: 312 LLELIGHAVAHLKKADEANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ 371

Query: 73  --YWRKATACM-KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE 119
             + R     + +++  + A     +G  +    SR    +K+  ++IA+
Sbjct: 372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ-KSREKEKMKDKLQKIAK 420

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 49.2 bits (118), Expect = 5e-07
 Identities = 15/89 (16%), Positives = 27/89 (30%), Gaps = 2/89 (2%)

Query: 18  FELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR 75
              +   + +A+     P       ++   S K   F  A A   R++  +P    A+  
Sbjct: 93  PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKE 152

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDS 104
            A   M   +   A    +K  S      
Sbjct: 153 LARTKMLAGQLGDADYYFKKYQSRVEVLQ 181

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 47.3 bits (113), Expect = 2e-06
 Identities = 12/79 (15%), Positives = 29/79 (36%), Gaps = 1/79 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           +  A      A++  P +   +  RA+    L+   +A     +A+ ++P  ++      
Sbjct: 24  YRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYG 83

Query: 78  TA-CMKLEEYETAKVALEK 95
              C +L     +    +K
Sbjct: 84  WFLCGRLNRPAESMAYFDK 102

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 46.9 bits (112), Expect = 3e-06
 Identities = 13/76 (17%), Positives = 33/76 (43%)

Query: 30  EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETA 89
           E +   + +    A   ++ Q++ +A A    A++ +P    A+  +A     L+  + A
Sbjct: 2   EKANQVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKA 61

Query: 90  KVALEKGASLAPGDSR 105
           + +  +  S+ P  + 
Sbjct: 62  QESFRQALSIKPDSAE 77

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 43.8 bits (104), Expect = 3e-05
 Identities = 12/85 (14%), Positives = 22/85 (25%), Gaps = 4/85 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA-YWRK 76
           F LA     +++   P     F + A+  +      +A     +       +        
Sbjct: 129 FGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLG 188

Query: 77  ATACMKLEEYETAKVALEKGASLAP 101
                 L   + A    E  A L  
Sbjct: 189 WKIAKALGNAQAAY---EYEAQLQA 210

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 47.1 bits (112), Expect = 5e-07
 Identities = 12/84 (14%), Positives = 22/84 (26%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   +    +  P   E +        + +    A+   N A  L+P     +   A
Sbjct: 33  LAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALA 92

Query: 78  TACMKLEEYETAKVALEKGASLAP 101
            +         A  +L       P
Sbjct: 93  VSHTNEHNANAALASLRAWLLSQP 116

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 Length = 121

 Score = 39.7 bits (93), Expect = 2e-04
 Identities = 15/62 (24%), Positives = 23/62 (37%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
              + +KL N  EA        + EP   +A+        + E+   A +AL     L P
Sbjct: 23  EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP 82

Query: 102 GD 103
            D
Sbjct: 83  KD 84

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 48.2 bits (114), Expect = 2e-06
 Identities = 16/123 (13%), Positives = 36/123 (29%), Gaps = 5/123 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKL--QNFTEAVADANRAIELEPSMSKAYWR 75
            +LA     +  +   ++       A  S+    +   +A        +           
Sbjct: 146 LDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNG 205

Query: 76  KATACMKLEEYETAKVALEKGASLAPGDSR-FTNLIKECEE--RIAEETGELQKQPLETG 132
           +A   M    +E A+  L++      G      NL+   +   +  E T     Q  +  
Sbjct: 206 QAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265

Query: 133 PTN 135
            ++
Sbjct: 266 RSH 268

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 Length = 159

 Score = 45.3 bits (106), Expect = 4e-06
 Identities = 28/148 (18%), Positives = 49/148 (33%), Gaps = 23/148 (15%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN------------SAELFADRAQASIK 48
            A      A+   +   ++ A     +A+EIS               A   A  A+A   
Sbjct: 10  GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAG 69

Query: 49  LQNFTEAVADANRAI-------ELEPSMSKAY----WRKATACMKLEEYETAKVALEKGA 97
           L++F EA+  A++A+       EL     K +    + +A A   L     A    +K  
Sbjct: 70  LRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVV 129

Query: 98  SLAPGDSRFTNLIKECEERIAEETGELQ 125
            +       T   +   E   +   +L 
Sbjct: 130 EMIEERKGETPGKERMMEVAIDRIAQLG 157

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 46.6 bits (110), Expect = 8e-06
 Identities = 15/96 (15%), Positives = 31/96 (32%), Gaps = 10/96 (10%)

Query: 16  DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT----------EAVADANRAIEL 65
                A +L  + ++ SP      A++A   I   +                D    +  
Sbjct: 213 KSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPE 272

Query: 66  EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
             ++S  Y  KA + +   + + +  A+  G  L  
Sbjct: 273 LNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM 308

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A Length = 372

 Score = 45.1 bits (106), Expect = 2e-05
 Identities = 14/92 (15%), Positives = 28/92 (30%), Gaps = 3/92 (3%)

Query: 15  DDYFELAYDLYSQAIEIS--PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA 72
           +             + +    N + ++  +A +++      E+    N  I+LE S    
Sbjct: 254 EKQLAALNTEIDNIVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLN 312

Query: 73  YWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           Y               A  A     +L PG +
Sbjct: 313 YVLLGKVYEMKGMNREAADAYLTAFNLRPGAN 344

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A Length = 91

 Score = 42.8 bits (102), Expect = 8e-06
 Identities = 19/66 (28%), Positives = 37/66 (56%)

Query: 18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
          ++ A + Y +A+E+ PN+AE + +   A  K  ++ EA+    +A+EL+P+ ++A     
Sbjct: 25 YDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLG 84

Query: 78 TACMKL 83
           A  K 
Sbjct: 85 NAKQKQ 90

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 Length = 158

 Score = 44.4 bits (104), Expect = 9e-06
 Identities = 19/134 (14%), Positives = 40/134 (29%), Gaps = 22/134 (16%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELE 66
            FE          + +P  A+         ++L  F           EA+     A+ ++
Sbjct: 17  LFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID 76

Query: 67  PSMSKAYWRKATACMKL-----------EEYETAKVALEKGASLAPGDSRFTNLIKECEE 115
           P   +A W    A                 ++ A    ++     P ++ +   ++   +
Sbjct: 77  PKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAK 136

Query: 116 RIAEETGELQKQPL 129
              +   E  KQ L
Sbjct: 137 A-PQLHAEAYKQGL 149

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} Length = 99

 Score = 43.1 bits (102), Expect = 9e-06
 Identities = 15/60 (25%), Positives = 24/60 (40%), Gaps = 1/60 (1%)

Query: 18 FELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
           E A     + ++  P    E +     A  KL ++ +A+ +   AIEL P       RK
Sbjct: 16 IENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQARK 75

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi} Length = 131

 Score = 43.7 bits (103), Expect = 1e-05
 Identities = 14/110 (12%), Positives = 36/110 (32%), Gaps = 7/110 (6%)

Query: 169 PARPKYRHEFYQKPEEVVVTV-FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLF 227
           P+  KY   + Q+  E+ +         +  + +    + + V               L 
Sbjct: 2   PSEAKYT--WDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ----GEIVIDGELL 55

Query: 228 GKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEFSKGAVVPQRVNPPSVS 277
            ++  +   + +    V++ + K     W SL     +V  Q++     +
Sbjct: 56  HEVDVSSLWWVINGDVVDVNVTKKRNEWWDSLLVGSESVDVQKLAENKHA 105

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 38.5 bits (90), Expect = 5e-04
 Identities = 17/86 (19%), Positives = 26/86 (30%), Gaps = 3/86 (3%)

Query: 21  AYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           A   Y +AI       + AE +         L  + +A A     ++  P+        A
Sbjct: 9   AVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYA 68

Query: 78  TACMKLEEYETAKVALEKGASLAPGD 103
                L  YE     L K  +    D
Sbjct: 69  MVLYNLGRYEQGVELLLKIIAETSDD 94

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... Length = 382

 Score = 40.8 bits (95), Expect = 5e-04
 Identities = 6/72 (8%), Positives = 25/72 (34%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
                +  +  IE  P + +++  R      L++ ++ +      +  +     A+  + 
Sbjct: 148 LHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQ 207

Query: 78  TACMKLEEYETA 89
               + + ++  
Sbjct: 208 WVIQEFKLWDNE 219

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4 Length = 124

 Score = 38.4 bits (89), Expect = 7e-04
 Identities = 19/92 (20%), Positives = 36/92 (39%), Gaps = 5/92 (5%)

Query: 171 RPKYRHEFYQKPEEVVVTV-FAKGIP-AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFG 228
           R  Y   + Q   ++ V V   K +   K V+V      + V++     E    + +L  
Sbjct: 19  RENYT--WSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTH 76

Query: 229 KIIPAKCRYEVLSTK-VEIRLAKAEPIQWSSL 259
           KI      + +   K V + L+K     W+++
Sbjct: 77  KINTESSLWSLEPGKCVLVNLSKVGEYWWNAI 108

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
2kmw_A	150	Uncharacterized protein AT3G03773; protein structu	99.89
1ejf_A	125	Progesterone receptor P23; chaperone, CO-chaperone	99.87
2xcm_C	92	SGT1-like protein, cytosolic heat shock protein 90	99.87
1wh0_A	134	Ubiquitin carboxyl-terminal hydrolase 19; USP, CS	99.86
1x5m_A	127	Calcyclin-binding protein; CS domain, structural g	99.86
2cg9_X	134	CO-chaperone protein SBA1; chaperone complex, HSP9	99.85
1rl1_A	114	Suppressor of G2 allele of SKP1 homolog; beta sand	99.83
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.83
2o30_A	131	Nuclear movement protein; MCSG, structural genomic	99.79
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	99.77
2jtt_C	35	Calcyclin-binding protein; S100A6, SIAH-1 interact	99.76
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	99.75
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.75
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.75
1wgv_A	124	KIAA1068 protein; CS domain, HSP20-like fold, stru	99.74
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.72
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.72
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.7
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.7
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.67
2rh0_A	157	NUDC domain-containing protein 2; 13542905, nuclea	99.65
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.65
1wfi_A	131	Nuclear distribution gene C homolog; NUDC, riken s	99.65
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.63
3qor_A	121	Nuclear migration protein NUDC; beta-sandwich, cha	99.62
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	99.62
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.62
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.62
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.61
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.61
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.6
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	99.6
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.59
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	99.59
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.57
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.57
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	99.56
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	99.56
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.55
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.55
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.53
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.52
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.52
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	99.51
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.51
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	99.5
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.5
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.49
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.49
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	99.48
3k9i_A	117	BH0479 protein; putative protein binding protein,	99.48
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.47
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.46
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.42
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.41
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	99.41
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.4
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.4
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.4
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.39
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.39
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.38
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.38
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.36
2kat_A	115	Uncharacterized protein; NESG, structure, structur	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.35
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.33
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.33
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.32
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.32
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.32
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.32
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.32
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.32
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.31
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.31
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.31
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.31
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.31
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.3
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.29
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.29
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.29
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.28
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.28
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.28
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.27
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.27
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.27
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.26
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.25
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.25
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.25
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.25
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.24
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.24
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.24
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.22
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.22
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	99.22
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.22
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.22
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.21
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.2
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.18
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.17
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.16
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.16
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.15
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.13
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.13
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	99.13
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.12
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.12
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.11
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.11
2l6j_A	111	TPR repeat-containing protein associated with HSP;	99.1
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.09
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.09
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.09
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	99.08
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.06
1pc2_A	152	Mitochondria fission protein; unknown function; NM	99.04
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	99.03
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	99.02
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	99.01
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.01
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.01
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	99.0
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	99.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	99.0
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.0
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.99
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.98
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.98
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.98
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.98
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.98
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	98.97
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.96
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.96
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.96
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.95
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.94
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	98.94
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.91
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.91
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.91
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.91
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.91
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.9
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.89
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.88
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	98.87
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.87
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.87
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.86
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.86
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.85
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	98.85
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.84
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	98.83
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.81
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.81
4g1t_A	472	Interferon-induced protein with tetratricopeptide	98.81
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.8
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.8
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.8
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.79
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.79
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.79
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.78
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	98.78
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	98.78
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.78
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.78
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.77
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	98.76
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.76
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.75
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	98.74
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.74
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.73
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.73
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.72
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.69
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.69
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	98.68
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	98.68
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.68
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.67
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	98.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	98.65
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.64
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.6
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.57
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.57
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.54
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	98.53
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	98.5
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.43
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	98.4
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.37
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.31
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	98.31
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	98.31
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	98.27
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	98.27
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.27
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	98.24
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.23
1pc2_A	152	Mitochondria fission protein; unknown function; NM	98.18
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	98.16
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	98.04
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.02
3gla_A	100	Low molecular weight heat shock protein; HSPA, SHP	98.01
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.99
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.98
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.98
2k8q_A	134	Protein SHQ1; beta-sandwich, CS domain, nucleus, s	97.96
4fei_A	102	Heat shock protein-related protein; stress respons	97.92
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	97.92
3aab_A	123	Putative uncharacterized protein ST1653; alpha-cry	97.78
3eud_A	115	Protein SHQ1; CS domain HSP20-like domain SHQ1 H/A	97.77
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	97.75
2wj5_A	101	Heat shock protein beta-6; chaperone, disulfide bo	97.68
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	97.67
1gme_A	151	Heat shock protein 16.9B; small heat shock protein	97.59
4eld_A	161	MJ16.5-P1, small heat shock protein HSP16.5; chape	97.58
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.52
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.43
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.4
3l1e_A	106	Alpha-crystallin A chain; lens transparency, polyd	97.38
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.32
3q9p_A	85	Heat shock protein beta-1; alpha-crystallin domain	97.31
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	97.23
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	97.22
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	97.21
2y1y_A	90	Alpha-crystallin B chain,; small heat shock protei	97.15
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	97.1
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	97.01
2klr_A	175	Alpha-crystallin B chain; protein, dimer, oligomer	96.91
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.86
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.79
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	96.65
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	96.49
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	96.03
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	95.94
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	95.67
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	94.88
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	94.78
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.7
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	94.58
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	94.48
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	94.31
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	93.73
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	93.43
1ya0_A	497	SMG-7 transcript variant 2; alpha-helical repeat,	93.15
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.67
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	92.04
2bol_A	314	TSP36, small heat shock protein; A-crystallin, mol	91.36
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	91.01
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	90.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	89.03
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	89.01
3kae_A	242	CDC27, possible protein of nuclear scaffold; tetra	88.44
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	87.02
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	85.11
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	84.22
2w2u_A	83	Hypothetical P60 katanin; hydrolase transport comp	83.72
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	83.58
2v6y_A	83	AAA family ATPase, P60 katanin; MIT, VPS4, archaea	83.39
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	83.25
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	81.22

>2kmw_A Uncharacterized protein AT3G03773; protein structure initiative, center for eukaryotic structural genomics, CESG, structural genomics; NMR {Arabidopsis thaliana}

Probab=99.89  E-value=2.4e-24  Score=181.48  Aligned_cols=107  Identities=24%  Similarity=0.361  Sum_probs=92.3

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEe-eeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      +|.||||.+.|+|+|+++++  +++.|+|+ +++|+|++...+|..|.++++||++|+|+ |+|+|++++|+|+|+|+++
T Consensus         6 ~~~W~Qt~~~V~ltI~l~~~--~~v~V~~~~~~~l~~~~~~~~~~~y~~~l~L~~~Idpe-S~~~v~~~kIei~L~K~e~   82 (150)
T 2kmw_A            6 EVLWAQRSDKVYLTVALPDA--KDISVKCEPQGLFSFSALGAQGERFEFSLELYGKIMTE-YRKNVGLRNIIFSIQKEER   82 (150)
T ss_dssp             CEEEEECSSEEEEEECCSSE--EEEEECCCTTEEEEEEEETTTTEEEEEEEEBSSCEEEE-EEEEEESSSEEEEEEECCS
T ss_pred             cEEEEeCCCEEEEEEEeCCC--CceEEEEecCCEEEEEEEcCCCceEEEEeEhhhccccc-ceEEecCCEEEEEEEECCC
Confidence            79999999999999999987  68999999 79999998866777899999999999999 9999999999999999999


Q ss_pred             CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHHhhh
Q 017264          254 IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQVKKE  304 (374)
Q Consensus       254 ~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~~~~  304 (374)
                      ..|++|++...               +.+.|.     ++|||+|.+|++++
T Consensus        83 ~~W~rL~k~~~---------------K~~~~l-----k~Dwdkw~dedeee  113 (150)
T 2kmw_A           83 SWWTRLLKSEE---------------KPAPYI-----KVDWNKWCDEDEEV  113 (150)
T ss_dssp             SCCSCSBSCCS---------------SCCTTE-----EECSSSSCCSSCCC
T ss_pred             CcCcccccCCc---------------ccCccc-----cccchhcCCchhcc
Confidence            99999997531               113343     67999999664433

>1ejf_A Progesterone receptor P23; chaperone, CO-chaperone, beta-sandwich; 2.49A {Homo sapiens} SCOP: b.15.1.2

Probab=99.87  E-value=6.3e-23  Score=168.26  Aligned_cols=103  Identities=18%  Similarity=0.268  Sum_probs=90.0

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      +|+||||.+.|+|+|+++++  +++.|+|++++|+|.+.. .+|..|.++++||++|+|++|+++|.+++|+|+|+|+++
T Consensus         5 ~~~W~Qt~~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~~~y~~~l~L~~~I~~e~S~~~v~~~kiei~L~K~~~   82 (125)
T 1ejf_A            5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (125)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             ceeEEeCCCEEEEEEEecCC--CceEEEEECCEEEEEEEeCCCCceEEEEEEccceeccccCEEEECCCEEEEEEEECCC
Confidence            79999999999999999985  799999999999999875 567789999999999999999999999999999999986


Q ss_pred             -CCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHH
Q 017264          254 -IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQ  300 (374)
Q Consensus       254 -~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e  300 (374)
                       ..|++|++..                .++.+     .++|||+|.+|
T Consensus        83 ~~~W~rL~~~~----------------~K~~~-----lk~D~dkw~de  109 (125)
T 1ejf_A           83 GQSWPRLTKER----------------AKLNW-----LSVDFNNWKDW  109 (125)
T ss_dssp             TCCCSSSBSSC----------------CCCTT-----EEECTTTCCCC
T ss_pred             CCCCCceecCC----------------Ccccc-----ccCChHHhCCc
Confidence             6999999753                12233     36799999864

>2xcm_C SGT1-like protein, cytosolic heat shock protein 90; chaperone-protein binding complex, stress response; HET: ADP; 2.20A {Arabidopsis thaliana} PDB: 2jki_S*

Probab=99.87  E-value=3.1e-22  Score=155.46  Aligned_cols=90  Identities=78%  Similarity=1.260  Sum_probs=84.9

Q ss_pred             CcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecC
Q 017264          173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  252 (374)
Q Consensus       173 ~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  252 (374)
                      ++||+||||.+.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|++++.+++|+|+|+|++
T Consensus         2 ~~~~~W~Qt~~~V~v~i~~~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~~~s~~~~~~~~l~i~L~K~~   81 (92)
T 2xcm_C            2 KYRHEYYQKPEEVVVTVFAKGIPKQNVNIDFGEQILSVVIEVPGEDAYYLQPRLFGKIIPDKCKYEVLSTKIEICLAKAD   81 (92)
T ss_dssp             CSEEEEEEETTEEEEEEECCSCCGGGEEEEECSSBEEEEECCTTSCCEEECCBBSSCBCGGGCEEEECSSCEEEEEEBSS
T ss_pred             CccccEEeCCCEEEEEEEECCCChHHeEEEEECCEEEEEEEcCCCcEEEEeeEcCCccCchhEEEEEECCEEEEEEEcCC
Confidence            56999999999999999999999999999999999999998766778999999999999999999999999999999999


Q ss_pred             CCCCCccccC
Q 017264          253 PIQWSSLEFS  262 (374)
Q Consensus       253 ~~~W~~L~~~  262 (374)
                      ++.|++|+++
T Consensus        82 ~~~W~~L~~~   91 (92)
T 2xcm_C           82 IITWASLEHG   91 (92)
T ss_dssp             SCCCSCSBTT
T ss_pred             CCcchhcccC
Confidence            8899999864

>1wh0_A Ubiquitin carboxyl-terminal hydrolase 19; USP, CS domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.86  E-value=3.7e-22  Score=164.70  Aligned_cols=91  Identities=26%  Similarity=0.485  Sum_probs=85.0

Q ss_pred             CcCcccccc-CCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCC------------eeeeccccccccccCceEEEE
Q 017264          173 KYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE------------AYHFQPRLFGKIIPAKCRYEV  239 (374)
Q Consensus       173 ~~r~~W~Qt-~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~------------~y~~~~~L~~~I~p~~s~~~v  239 (374)
                      .+||+|||| .+.|+|+|+++++.++++.|+|++++|+|.+...++.            .|.++++||++|+|++|+|+|
T Consensus        19 ~~r~~W~Qt~~~~V~vtI~~k~v~~~~v~V~f~~~~l~v~~~~~~~~~l~~~~a~g~~~~y~~~~~L~~~I~pe~S~~~v   98 (134)
T 1wh0_A           19 FVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTFCF   98 (134)
T ss_dssp             CCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEEEE
T ss_pred             CCCeEEEcCCCCEEEEEEEeCCCCcccCEEEEECCEEEEEEEcCCCcccccccccCcceeEEEeccccccCCchhCEEEE
Confidence            579999999 9999999999999999999999999999999876654            799999999999999999999


Q ss_pred             cCcEEEEEEeecCCCCCCccccCC
Q 017264          240 LSTKVEIRLAKAEPIQWSSLEFSK  263 (374)
Q Consensus       240 ~~~kiei~L~K~~~~~W~~L~~~~  263 (374)
                      .+++|+|+|+|+++..|++|++..
T Consensus        99 ~~~kIeI~L~K~e~~~W~~L~~~~  122 (134)
T 1wh0_A           99 TASRIDICLRKRQSQRWGGLEAPA  122 (134)
T ss_dssp             CSSEEEEEEEESSSCCCSCSBCCC
T ss_pred             eCCEEEEEEEECCCCccccccccC
Confidence            999999999999989999999753

>1x5m_A Calcyclin-binding protein; CS domain, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.86  E-value=1.6e-21  Score=160.38  Aligned_cols=89  Identities=20%  Similarity=0.244  Sum_probs=83.2

Q ss_pred             cCccccccCCeEEEEEEeCCC---CCCceEEEEeeeEEEEEEEcCCCCeeeecc-ccccccccCceEEEEcCcEEEEEEe
Q 017264          174 YRHEFYQKPEEVVVTVFAKGI---PAKNVTVDFGEQILSVSIDVPGEEAYHFQP-RLFGKIIPAKCRYEVLSTKVEIRLA  249 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~k~~---~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~-~L~~~I~p~~s~~~v~~~kiei~L~  249 (374)
                      .||+||||.+.|+|+|+++++   .++++.|+|++++|+|.+...+|..|.|++ +||++|+|++|+|+|.+++|+|+|+
T Consensus        21 ~~y~W~Qt~~~V~i~I~l~~~~~~~~~~v~V~~~~~~l~v~~~~~~~~~y~~~~~~L~~~I~~e~S~~~v~~~kVei~L~  100 (127)
T 1x5m_A           21 SNYGWDQSDKFVKIYITLTGVHQVPTENVQVHFTERSFDLLVKNLNGKSYSMIVNNLLKPISVEGSSKKVKTDTVLILCR  100 (127)
T ss_dssp             CSCEEEEETTEEEEEEECTTTTTSCTTSEEEEECSSEEEEEECSCSSSCEEEEEECBSSCCCTTTCEEEEETTEEEEEEE
T ss_pred             cEEEEEcCCCEEEEEEEeCCCCcCCccccEEEEEcCEEEEEEEcCCCCcEEEEhHHhcCccCcccCEEEEeCCEEEEEEE
Confidence            489999999999999999998   789999999999999999877788899999 5999999999999999999999999


Q ss_pred             ecCCC-CCCccccC
Q 017264          250 KAEPI-QWSSLEFS  262 (374)
Q Consensus       250 K~~~~-~W~~L~~~  262 (374)
                      |+++. .|++|+..
T Consensus       101 K~~~~~~W~~L~~~  114 (127)
T 1x5m_A          101 KKVENTRWDYLTQV  114 (127)
T ss_dssp             CSSSSCCCSSSBHH
T ss_pred             ECCCCCCCCccccc
Confidence            99874 99999965

>2cg9_X CO-chaperone protein SBA1; chaperone complex, HSP90, heat shock protein, ATP-binding, heat shock, nucleotide-binding, acetylation; HET: ATP; 3.1A {Saccharomyces cerevisiae}

Probab=99.85  E-value=1.5e-22  Score=167.72  Aligned_cols=105  Identities=19%  Similarity=0.285  Sum_probs=84.8

Q ss_pred             cCccccccCCe-------EEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC------CCeeeeccccccccccCceEEEEc
Q 017264          174 YRHEFYQKPEE-------VVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG------EEAYHFQPRLFGKIIPAKCRYEVL  240 (374)
Q Consensus       174 ~r~~W~Qt~~~-------V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~------~~~y~~~~~L~~~I~p~~s~~~v~  240 (374)
                      .+|.||||.+.       |+|+|+++++  .++.|+|++++|+|++...+      +..|.++++||++|+|++|++++.
T Consensus         7 p~~~W~Q~~~~~~~~k~~V~ltI~~~~~--~~~~V~~~~~~l~~~~~~~~~~g~~~~~~y~~~l~L~~~Idpe~S~~~v~   84 (134)
T 2cg9_X            7 PQVAWAQRSSTTDPERNYVLITVSIADC--DAPELTIKPSYIELKAQSKPHVGDENVHHYQLHIDLYKEIIPEKTMHKVA   84 (134)
T ss_dssp             ----CBCCCEEECCCSSEEEEECCCSSE--ESCCCCBCSSEEEECCEEC-------CEEBCEEEECSSCCCSSSEEEEEC
T ss_pred             CCEEEEeCCCCcCCcCCEEEEEEEecCC--CceEEEEECCEEEEEEecccccCCccCceEEEEEEChhhccccccEEEEC
Confidence            37999999987       9999999986  59999999999999876543      468999999999999999999999


Q ss_pred             CcE-EEEEEeecC--CCCCCccccCCCccCCcccCCCCCCCCCCCCCCCCCCCCCCchhHHHHH
Q 017264          241 STK-VEIRLAKAE--PIQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDKLEAQV  301 (374)
Q Consensus       241 ~~k-iei~L~K~~--~~~W~~L~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~~~~dWdk~~~e~  301 (374)
                      +++ |+|+|+|++  +..|++|++..                .++.|     .++|||+|.+|+
T Consensus        85 ~~~~vei~L~K~~~~~~~W~rL~k~~----------------~K~~~-----lk~D~dkw~dEd  127 (134)
T 2cg9_X           85 NGQHYFLKLYKKDLESEYWPRLTKEK----------------VKYPY-----IKTDFDKWVDAD  127 (134)
T ss_dssp             CC--CEEEEEECSSSSCCCSCSSSSC----------------CCCSS-----EEECTTTCCCSS
T ss_pred             CCEEEEEEEEECCCCCCCCCceecCC----------------CccCc-----ccCCchhcCCcc
Confidence            999 999999998  47999999753                12223     367999999653

>1rl1_A Suppressor of G2 allele of SKP1 homolog; beta sandwich, 7 beta strands, similar to P23, lacking LAST beta strand SEEN in P23, protein degradation; NMR {Homo sapiens} SCOP: b.15.1.3

Probab=99.83  E-value=7.6e-21  Score=153.59  Aligned_cols=93  Identities=35%  Similarity=0.660  Sum_probs=86.6

Q ss_pred             CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeec
Q 017264          172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  251 (374)
Q Consensus       172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  251 (374)
                      +.+||+||||.+.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|++++.+++|+|+|+|+
T Consensus         8 ~~~~~~W~Qt~~~V~v~i~l~~v~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~~e~s~~~~~~~~l~i~L~K~   87 (114)
T 1rl1_A            8 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   87 (114)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCCCccEEeCCCEEEEEEEeCCCCHHHCEEEEEcCEEEEEEEeCCCcEEEEEeeCCCcCCccccEEEEECCEEEEEEEcC
Confidence            46799999999999999999999999999999999999999877778899999999999999999999999999999999


Q ss_pred             CCCCCCccccCCC
Q 017264          252 EPIQWSSLEFSKG  264 (374)
Q Consensus       252 ~~~~W~~L~~~~~  264 (374)
                      ++..|++|++...
T Consensus        88 ~~~~W~~L~~~~~  100 (114)
T 1rl1_A           88 EAVRWEKLEGQGD  100 (114)
T ss_dssp             SCCCCSSSBTTC-
T ss_pred             CCCcCccccccCC
Confidence            9899999997643

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.83  E-value=1.7e-19  Score=147.83  Aligned_cols=112  Identities=27%  Similarity=0.476  Sum_probs=109.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++.+.++|+.+++.|+|++|+..|+++|+++|.++.+++++|.||.++|++++|+.+|++++.++|++..+|+++|.+|.
T Consensus        13 a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           13 AQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            67789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+|++++|+.+|+++++++|++..+...++.|
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence            99999999999999999999999998888776

>2o30_A Nuclear movement protein; MCSG, structural genomics, PSI-2, structure initiative; 1.66A {Encephalitozoon cuniculi}

Probab=99.79  E-value=1.8e-19  Score=148.82  Aligned_cols=85  Identities=12%  Similarity=0.166  Sum_probs=74.7

Q ss_pred             cCccccccCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeecC
Q 017264          174 YRHEFYQKPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAE  252 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~  252 (374)
                      .+|.|+||.+.|+|+|++ +|++.+++.|+|++++|+|.+.   |.+ .+.++||++|+|++|+|++.+++|+|+|+|+.
T Consensus         5 ~~y~W~Qt~~~V~i~I~lp~~~~~kdv~V~i~~~~l~v~~~---g~~-~~~~~L~~~I~~e~S~w~i~~~kv~i~L~K~~   80 (131)
T 2o30_A            5 AKYTWDQELNEINIQFPVTGDADSSAIKIRMVGKKICVKNQ---GEI-VIDGELLHEVDVSSLWWVINGDVVDVNVTKKR   80 (131)
T ss_dssp             CCCEEEEETTEEEEEEECC---CCSCEEEEEETTEEEEEET---TEE-EEEEEBSSCEEEEEEEEEEETTEEEEEEEESS
T ss_pred             CcEEEEecCCEEEEEEECCCCCCccceEEEEECCEEEEEEC---CEe-eEccccccccccccCEEEEeCCEEEEEEEECC
Confidence            379999999999999998 6888999999999999999984   545 78889999999999999999999999999996


Q ss_pred             CCCCCccccC
Q 017264          253 PIQWSSLEFS  262 (374)
Q Consensus       253 ~~~W~~L~~~  262 (374)
                      ...|++|...
T Consensus        81 ~~~W~~L~~~   90 (131)
T 2o30_A           81 NEWWDSLLVG   90 (131)
T ss_dssp             CCCCSCSBC-
T ss_pred             CCCCccccCC
Confidence            6789999974

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=99.77  E-value=1.3e-18  Score=147.78  Aligned_cols=120  Identities=20%  Similarity=0.147  Sum_probs=110.7

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHccCHHHHHHHHHHHHHh---
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAE-----LFADRAQASIKLQNFTEAVADANRAIEL---   65 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~~~-----~~~~ra~~~~~l~~~~~Al~~~~~al~l---   65 (374)
                      |+..+++.|+.++..|+|++|+..|++||+++|.       +..     +|.++|.|+.++|+|++|+.+|++||++   
T Consensus        10 ~a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~   89 (159)
T 2hr2_A           10 GAYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNR   89 (159)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            4678899999999999999999999999999999       544     9999999999999999999999999999   


Q ss_pred             ----CCCCHHHH----HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           66 ----EPSMSKAY----WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        66 ----~p~~~~a~----~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                          +|++..+|    +++|.+|..+|+|++|+.+|+++++++|++..+...+..+.+.+...
T Consensus        90 ~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~~~~~~~~~  152 (159)
T 2hr2_A           90 RGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKERMMEVAIDR  152 (159)
T ss_dssp             HCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHHHHHHHHHH
T ss_pred             cccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH
Confidence                99999999    99999999999999999999999999999988777777776666554

>2jtt_C Calcyclin-binding protein; S100A6, SIAH-1 interacting protein, ubiquitination, E3 ligase complex, beta-catenin, calcium, cell cycle, mitogen; NMR {Mus musculus}

Probab=99.76  E-value=8.6e-20  Score=111.70  Aligned_cols=32  Identities=34%  Similarity=0.688  Sum_probs=29.6

Q ss_pred             chHHHHHHHHHHhcCCCHHHHHHhhhhhhhcC
Q 017264          312 GDAALNKFFQEIYADADEDTRRAMKKSFVESN  343 (374)
Q Consensus       312 ~~~~~~~~f~~iY~~~d~d~kram~Ks~~eS~  343 (374)
                      ++++||+|||+||++|||||||||||||+|||
T Consensus         4 p~~~l~~~fk~iY~~gddd~kram~KS~~eS~   35 (35)
T 2jtt_C            4 SSEGLMNVLKKIYEDGDDDMKRTINKAWVESR   35 (35)
T ss_dssp             -CCSHHHHHHHHHTTCCSSHHHHHHHHHHTTC
T ss_pred             hhHHHHHHHHHHHhcCCHHHHHHHHHHHhhcC
Confidence            45679999999999999999999999999997

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=99.75  E-value=1.4e-17  Score=141.21  Aligned_cols=120  Identities=23%  Similarity=0.312  Sum_probs=113.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI------------------SPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~------------------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al   63 (374)
                      +..++..|+.++..|+|++|+..|.++|.+                  +|.+..+|+++|.||.++|+|++|+.+|.+++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            467899999999999999999999999999                  77778999999999999999999999999999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh-hHHHHHHHHHHHHHhhh
Q 017264           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS-RFTNLIKECEERIAEET  121 (374)
Q Consensus        64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~-~~~~~~~~~~~~l~~~~  121 (374)
                      .++|.++.+|+++|.+|+.+|+|++|+.+|++++.++|++. .+...+..|..++....
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~~~~~~~  149 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTERRAEKK  149 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHT
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999 78889999998887763

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.75  E-value=2.2e-17  Score=133.64  Aligned_cols=116  Identities=31%  Similarity=0.460  Sum_probs=111.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++.++..|..++..|+|++|+..|.+++..+|.++.+++++|.||.++|++++|+.+|++++.++|++..+++++|.++.
T Consensus         4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcC------CCChhHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLA------PGDSRFTNLIKECEERI  117 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~------p~~~~~~~~~~~~~~~l  117 (374)
                      .+|++++|+.+|+++++++      |.+..+...+..+..++
T Consensus        84 ~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~~l  125 (126)
T 3upv_A           84 AVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQQR  125 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHHHC
T ss_pred             HHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHHhh
Confidence            9999999999999999999      99999999998887654

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.75  E-value=6.8e-17  Score=137.19  Aligned_cols=120  Identities=27%  Similarity=0.383  Sum_probs=113.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|++|+.+|.++|.++|.++.+++++|.||..+|+|++|+.+|++++.++|++..+|+++|.+|+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   90 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF   90 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChh--HHHHHHHHHHHHHhhh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSR--FTNLIKECEERIAEET  121 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~--~~~~~~~~~~~l~~~~  121 (374)
                      .+|++++|+.+|+++++++|++..  +...+..+..++....
T Consensus        91 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~  132 (164)
T 3sz7_A           91 DMADYKGAKEAYEKGIEAEGNGGSDAMKRGLETTKRKIEEAN  132 (164)
T ss_dssp             HTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999988  6777788888887764

>1wgv_A KIAA1068 protein; CS domain, HSP20-like fold, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: b.15.1.4

Probab=99.74  E-value=9.1e-18  Score=137.32  Aligned_cols=89  Identities=18%  Similarity=0.214  Sum_probs=81.4

Q ss_pred             CccccccCCeEEEEEEeC-CC-CCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEeec
Q 017264          175 RHEFYQKPEEVVVTVFAK-GI-PAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKA  251 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k-~~-~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~  251 (374)
                      +|.|+||.+.|+|+|.++ ++ +.+++.|+|++++|+|.+...+|..+.++++||++|+|++|+|++.+++ |+|+|+|+
T Consensus        21 ~y~W~Qt~~~V~i~I~lp~~~~~~kdv~V~i~~~~l~v~~~~~~~~~~~~~~~L~~~I~~e~S~w~i~~~k~v~i~L~K~  100 (124)
T 1wgv_A           21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKV  100 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECBS
T ss_pred             cEEEEEcccEEEEEEEcCCCCCchhheEEEEEcCEEEEEEEccCCCceEEcccccCcCCCcCCEEEEeCCCEEEEEEEEC
Confidence            799999999999999986 77 7899999999999999997655666789999999999999999999987 99999999


Q ss_pred             CCCCCCccccCC
Q 017264          252 EPIQWSSLEFSK  263 (374)
Q Consensus       252 ~~~~W~~L~~~~  263 (374)
                      +...|++|...+
T Consensus       101 ~~~~W~~L~~~~  112 (124)
T 1wgv_A          101 GEYWWNAILEGE  112 (124)
T ss_dssp             SSCCCSCSBTTS
T ss_pred             CCCCCcCcccCC
Confidence            889999999754

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.72  E-value=8.3e-17  Score=131.69  Aligned_cols=111  Identities=23%  Similarity=0.288  Sum_probs=100.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-------~~a~~   74 (374)
                      |..+.+.|+.+++.|+|++|+.+|++||+++|.++.+|.++|.||.++|+|++|+.+|.+++.++|.+       +.+|+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999998754       46899


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ++|.++..+|+|++|+.+|++++...|+ +.....+..+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~l  125 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKKVKEL  125 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHHHHHh
Confidence            9999999999999999999999999885 5555444444

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.72  E-value=1.7e-16  Score=134.38  Aligned_cols=102  Identities=13%  Similarity=0.039  Sum_probs=99.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++.++|.++.+|+++|.||..+|+|++|+..|++++.++|+++.+|+++|.+|..
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~  116 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR  116 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCh
Q 017264           83 LEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      +|++++|+.+|++++++.|+..
T Consensus       117 lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          117 LKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             TTCHHHHHHHHHHHHHHCCCHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999999765

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.70  E-value=3.8e-16  Score=131.28  Aligned_cols=118  Identities=11%  Similarity=0.135  Sum_probs=112.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++..+|.++.+++.+|.||..+|++++|+..|++++.++|+++.+++.+|.+|..
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~  101 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLLQ  101 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.+|+++++++|+++....+..++...+...
T Consensus       102 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  139 (148)
T 2vgx_A          102 XGELAEAESGLFLAQELIANXPEFXELSTRVSSMLEAI  139 (148)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHC
T ss_pred             cCCHHHHHHHHHHHHHHCcCCCcchHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888877765

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.70  E-value=4.6e-16  Score=129.16  Aligned_cols=118  Identities=10%  Similarity=0.134  Sum_probs=112.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+.+|.+++..+|.++.+++.+|.||..+|++++|+..|++++.++|+++.+++.+|.+|..
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.+|++++.++|+++.......++...+...
T Consensus        99 ~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~l~~l  136 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAAQPAHEALAARAGAMLEAV  136 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHTCGGGHHHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHH
Confidence            99999999999999999999998888888888777665

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.67  E-value=9.7e-16  Score=128.89  Aligned_cols=111  Identities=18%  Similarity=0.113  Sum_probs=103.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|+|++|+.+|.++|+++|+++.+++.+|.||..+|++++|+..|+++++++|+++.+++++|.+|+.+
T Consensus        33 ~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  112 (150)
T 4ga2_A           33 KGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENTDKAVECYRRSVELNPTQKDLVLKIAELLCKN  112 (150)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHH-HHHHHhcCCCChhHHHHHHHHH
Q 017264           84 EEYETAKVA-LEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        84 g~~~eA~~~-~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      |++.+|..+ ++++++++|+++.+.....++.
T Consensus       113 ~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll  144 (150)
T 4ga2_A          113 DVTDGRAKYWVERAAKLFPGSPAVYKLKEQLL  144 (150)
T ss_dssp             CSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             CChHHHHHHHHHHHHHhCcCCHHHHHHHHHHH
Confidence            999887765 5899999999998877666654

>2rh0_A NUDC domain-containing protein 2; 13542905, nuclear movement protein, structural genomics, joint center for structural genomics, JCSG; 1.95A {Mus musculus}

Probab=99.65  E-value=2e-16  Score=134.18  Aligned_cols=85  Identities=24%  Similarity=0.371  Sum_probs=76.4

Q ss_pred             cCccccccCCeEEEEEEeC-CCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcE-EEEEEeec
Q 017264          174 YRHEFYQKPEEVVVTVFAK-GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTK-VEIRLAKA  251 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~k-~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~k-iei~L~K~  251 (374)
                      .+|.|+||.+.|+|+|.++ ++..++|.|+|++++|+|.+.   |.. .++++||++|+|++|+|+|.+++ |+|+|+|+
T Consensus        14 ~~y~W~Qt~~eV~v~I~lp~~~~~kdv~V~i~~~~L~v~~k---g~~-~l~g~L~~~I~~eeS~w~i~~~k~v~I~L~K~   89 (157)
T 2rh0_A           14 PWGQWYQTLEEVFIEVQVPPGTRAQDIQCGLQSRHVALAVG---GRE-ILKGKLFDSTIADEGTWTLEDRKMVRIVLTKT   89 (157)
T ss_dssp             SSEEEEECSSEEEEEEECCTTCCGGGEEEEECSSEEEEEET---TEE-EEEEEBSSCBCGGGCEEEEECCCEEEEEEEBS
T ss_pred             CcEEEEecCCEEEEEEECCCCCcccceEEEEecCEEEEEEC---CEE-EEeeccccccCccccEEEEcCCcEEEEEEEEc
Confidence            4899999999999999985 788899999999999999985   444 48889999999999999999987 99999999


Q ss_pred             CC---CCCCccccC
Q 017264          252 EP---IQWSSLEFS  262 (374)
Q Consensus       252 ~~---~~W~~L~~~  262 (374)
                      +.   ..|++|...
T Consensus        90 ~~~~~~~W~~L~k~  103 (157)
T 2rh0_A           90 KRDAANCWTSLLES  103 (157)
T ss_dssp             SCSTTCCCSEEETT
T ss_pred             CCCcCCcChhhhcC
Confidence            85   799999964

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.65  E-value=3.6e-15  Score=121.56  Aligned_cols=119  Identities=24%  Similarity=0.367  Sum_probs=112.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|++|+..|.+++..+|.++.+++.+|.||..+|++++|+.++.+++.++|++..+++.+|.+++
T Consensus         9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   88 (137)
T 3q49_B            9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   88 (137)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCC-----ChhHHHHHHHHHHHHHhh
Q 017264           82 KLEEYETAKVALEKGASLAPG-----DSRFTNLIKECEERIAEE  120 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~-----~~~~~~~~~~~~~~l~~~  120 (374)
                      .+|++++|+.+|++++.++|+     +..+...+..+..+....
T Consensus        89 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~~~~~~~  132 (137)
T 3q49_B           89 EMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRWNS  132 (137)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999998     778888888888776554

>1wfi_A Nuclear distribution gene C homolog; NUDC, riken structural genomics/proteomics initiative, RSGI, structural genomics, transport protein; NMR {Mus musculus} SCOP: b.15.1.4

Probab=99.65  E-value=5.4e-16  Score=128.03  Aligned_cols=86  Identities=19%  Similarity=0.266  Sum_probs=77.8

Q ss_pred             CccccccCCeEEEEEEeC-C--CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEee
Q 017264          175 RHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAK  250 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K  250 (374)
                      +|.|+||.+.|+|+|.++ +  +..+++.|+|++++|+|.+.   |..+.++++||++|+|++|+|++.++ .|+|+|+|
T Consensus         9 ~y~W~Qt~~~V~i~I~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~~~L~~~I~~e~s~w~i~~~k~v~i~L~K   85 (131)
T 1wfi_A            9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEK   85 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEB
T ss_pred             cEEEEecCCEEEEEEECCCCCcccccceEEEEeCCEEEEEEC---CceEEEecccccccccccCEEEEcCCCEEEEEEEE
Confidence            799999999999999987 5  78899999999999999985   44577899999999999999999987 59999999


Q ss_pred             cCC-CCCCccccCC
Q 017264          251 AEP-IQWSSLEFSK  263 (374)
Q Consensus       251 ~~~-~~W~~L~~~~  263 (374)
                      ++. ..|++|...+
T Consensus        86 ~~~~~~W~~L~~~~   99 (131)
T 1wfi_A           86 INKMEWWNRLVTSD   99 (131)
T ss_dssp             SSSCCCCSCSBSSC
T ss_pred             CCCCCCChhhhcCC
Confidence            987 6999999754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.63  E-value=9.6e-15  Score=127.71  Aligned_cols=120  Identities=23%  Similarity=0.306  Sum_probs=114.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----------------ELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~----------------~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +..++..|..++..|+|++|+.+|.+++.+.|.++                .++.++|.||..+|+|++|+.+|.+++.+
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            35678999999999999999999999999999887                89999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhhh
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEET  121 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~~  121 (374)
                      +|.+..+++++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++...
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~  173 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEAR  173 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHH
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999888764

>3qor_A Nuclear migration protein NUDC; beta-sandwich, chaperone, protein cell cycle; HET: OCS; 1.75A {Homo sapiens} PDB: 3qor_B* 2cr0_A

Probab=99.62  E-value=1.1e-15  Score=124.26  Aligned_cols=87  Identities=18%  Similarity=0.245  Sum_probs=77.8

Q ss_pred             CccccccCCeEEEEEEeC-C--CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEee
Q 017264          175 RHEFYQKPEEVVVTVFAK-G--IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAK  250 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k-~--~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K  250 (374)
                      +|.|+||.+.|+|+|.++ +  +..++|.|+|++++|+|.++   |..|.++++||++|+|++|+|++.+. +|+|+|.|
T Consensus        18 ~y~W~Qt~~eV~v~V~lp~~~~~~~kdv~V~i~~~~l~v~~k---g~~~~~~g~L~~~I~~deS~w~i~~~~~i~i~L~K   94 (121)
T 3qor_A           18 NYRWTQTLSELDLAVPFCVNFRLKGKDMVVDIQRRHLRVGLK---GQPAIIDGELYNEVKVEESSWLIADGAVVTVHLEK   94 (121)
T ss_dssp             SCEEEECSSEEEEEEECCCSSCCCGGGEEEEEETTEEEEEET---TSCCSEEEEBSSCBCGGGCEEEEETTTEEEEEEEB
T ss_pred             CEEEEEccceEEEEEECCCCCcccccceEEEEEcCEEEEEEc---CcceEEeccccccccccccEEEEcCCCEEEEEEEE
Confidence            799999999999999886 4  78899999999999999886   44678899999999999999999986 89999999


Q ss_pred             cCC-CCCCccccCCC
Q 017264          251 AEP-IQWSSLEFSKG  264 (374)
Q Consensus       251 ~~~-~~W~~L~~~~~  264 (374)
                      .+. ..|++|...+.
T Consensus        95 ~~~~~~W~~L~~~~~  109 (121)
T 3qor_A           95 INKMEWWSRLVSSDP  109 (121)
T ss_dssp             SSSSCCCSCSBTTSC
T ss_pred             CCCCCCChhhhcCCC
Confidence            986 69999987543

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=99.62  E-value=2.2e-14  Score=112.57  Aligned_cols=114  Identities=26%  Similarity=0.440  Sum_probs=108.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|++|+..|.+++..+|.++.++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++.
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+|++++|+.+|+++++++|++..+...+..+..
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  117 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  117 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhhc
Confidence            9999999999999999999999988887777653

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.62  E-value=4.9e-15  Score=120.05  Aligned_cols=102  Identities=12%  Similarity=0.008  Sum_probs=93.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|++++|+..|.+++..+|+++.+++.+|.+|..+|++++|+..|++++.++|++..+++.+|.+|..+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChh
Q 017264           84 EEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      |++++|+.+|+++++++|++..
T Consensus        99 g~~~~A~~~~~~al~~~P~~~~  120 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQYEQ  120 (121)
T ss_dssp             HHHHHHHHHHHHHHC-------
T ss_pred             CCHHHHHHHHHHHHHhCcCCCC
Confidence            9999999999999999997653

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.62  E-value=1e-14  Score=129.12  Aligned_cols=116  Identities=15%  Similarity=0.046  Sum_probs=110.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFAD----------------RAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~----------------ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      ++.++.+|..++..|+|++|+..|.+++..+|+++.+++.                +|.+|.++|++++|+..|++++.+
T Consensus         4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   83 (208)
T 3urz_A            4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK   83 (208)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            4678999999999999999999999999999999999999                999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +|++..+++.+|.+++.+|++++|+.+|+++++++|++......++.+....
T Consensus        84 ~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~  135 (208)
T 3urz_A           84 APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLT  135 (208)
T ss_dssp             CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999888888775433

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.61  E-value=1.6e-14  Score=137.81  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=111.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      +..+...|+.++..|+|++|+..|.+||.++|.+               ..+++++|.||.++|+|++|+.+|++++.++
T Consensus       147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  226 (336)
T 1p5q_A          147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD  226 (336)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            3467899999999999999999999999999999               6999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++..+++++|.+|+.+|+|++|+.+|+++++++|++..+...++.+...+++.
T Consensus       227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  280 (336)
T 1p5q_A          227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  280 (336)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888877765554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.61  E-value=1.3e-14  Score=116.80  Aligned_cols=115  Identities=28%  Similarity=0.419  Sum_probs=109.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..+++++.++|.+..+++.+|.+++.
T Consensus        17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~   96 (133)
T 2lni_A           17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEA   96 (133)
T ss_dssp             HHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            57889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +|++++|+.+|++++.++|.+..+...++.+...+
T Consensus        97 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  131 (133)
T 2lni_A           97 MKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQ  131 (133)
T ss_dssp             TTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHh
Confidence            99999999999999999999998888888876654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.60  E-value=1.1e-14  Score=144.76  Aligned_cols=119  Identities=23%  Similarity=0.331  Sum_probs=108.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      +..++.+|+.++..|+|++|+..|.+||.++|.+               ..+|+++|.||+++++|++|+.+|.+|+.++
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            3567899999999999999999999999999998               7999999999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+..++++.
T Consensus       348 p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~  401 (457)
T 1kt0_A          348 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEH  401 (457)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999888888888776654

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=99.60  E-value=2.1e-14  Score=115.70  Aligned_cols=115  Identities=17%  Similarity=0.150  Sum_probs=104.9

Q ss_pred             ChHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHH
Q 017264            1 MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA---ELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYW   74 (374)
Q Consensus         1 ma~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~---~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~   74 (374)
                      |++.++..|..++..|+|++|+..|.+++...|++.   .+++.+|.+|..+|++++|+..|.+++.++|++   +.+++
T Consensus         1 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~   80 (129)
T 2xev_A            1 MARTAYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLL   80 (129)
T ss_dssp             --CCHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHH
T ss_pred             CcHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHH
Confidence            456788999999999999999999999999999988   799999999999999999999999999999999   89999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+|.+++.+|++++|+..|++++...|++.........+..
T Consensus        81 ~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~  121 (129)
T 2xev_A           81 KLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERLQS  121 (129)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHH
Confidence            99999999999999999999999999998876665555443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.59  E-value=6.6e-14  Score=111.68  Aligned_cols=117  Identities=33%  Similarity=0.473  Sum_probs=111.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|+.|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+++.
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   92 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSS   92 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +|++++|+.+|+++++++|++......++.+...+++
T Consensus        93 ~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           93 LNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTT
T ss_pred             hCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhc
Confidence            9999999999999999999999988888888776654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.59  E-value=4.3e-14  Score=116.01  Aligned_cols=113  Identities=27%  Similarity=0.424  Sum_probs=107.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..++..|..++..|+|++|+.+|.+++..+|++   ..+++.+|.+|..++++++|+..+.+++.++|.+..+++.+|.
T Consensus        28 ~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~  107 (148)
T 2dba_A           28 VEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRSQ  107 (148)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHHH
Confidence            4568899999999999999999999999999998   8999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           79 ACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      +++.+|++++|+.+|++++.++|++..+...+..+.
T Consensus       108 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  143 (148)
T 2dba_A          108 ALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS  143 (148)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence            999999999999999999999999998887777664

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.57  E-value=1.4e-13  Score=115.09  Aligned_cols=113  Identities=32%  Similarity=0.511  Sum_probs=106.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|+.|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+|++++|+.+|++++.++|.+......+..+.
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~  125 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECN  125 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence            999999999999999999999988776666553

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.57  E-value=3.5e-14  Score=148.79  Aligned_cols=113  Identities=18%  Similarity=0.236  Sum_probs=62.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+.+.|+.+...|+|++|+.+|.+||+++|+++.+++++|.+|.++|++++|+..|++|++++|+++.+|+++|.+|..
T Consensus        10 ~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~   89 (723)
T 4gyw_A           10 DSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKE   89 (723)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            34555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      +|++++|+.+|+++++++|++..+...++.+..
T Consensus        90 ~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           90 MQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            555555555555555555555554444444443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=99.56  E-value=1e-13  Score=110.71  Aligned_cols=118  Identities=19%  Similarity=0.281  Sum_probs=110.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-------~~a~~   74 (374)
                      +..+...|..++..|+|++|+.+|.+++..+|.++.+++.+|.+|..+|++++|+..+.+++.+.|.+       ..+++
T Consensus         4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999998876       89999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++|.+++.+|++++|+.+|++++.+.| +......+..+...+...
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~  128 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKILKEQ  128 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999 688888888888877654

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=99.56  E-value=3e-14  Score=137.93  Aligned_cols=119  Identities=24%  Similarity=0.442  Sum_probs=113.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHH----------------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE----------------ISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~----------------~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +..+...|+.++..|+|++|+..|.+||+                .+|.+..+|.++|.||+++++|++|+.+|++|+.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  302 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  302 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh
Confidence            45688999999999999999999999999                77888899999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++..+++++|.+|+.+|+|++|+.+|+++++++|++..+...+..+...++..
T Consensus       303 ~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~  357 (370)
T 1ihg_A          303 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  357 (370)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998887765

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.55  E-value=5.9e-14  Score=125.00  Aligned_cols=115  Identities=15%  Similarity=0.167  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.++|..+|.++.+++.+|.+|.++|++++|+..+++++.++|++..+++.+|.++..
T Consensus         6 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~   85 (217)
T 2pl2_A            6 QNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVA   85 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            35667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             h-----------cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           83 L-----------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        83 l-----------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +           |++++|+.+|+++++++|++..+...++.+...+
T Consensus        86 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~  131 (217)
T 2pl2_A           86 LYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALL  131 (217)
T ss_dssp             HHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             hhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHc
Confidence            7           7777777777777777777776666666655443

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.55  E-value=6.1e-15  Score=123.96  Aligned_cols=114  Identities=11%  Similarity=-0.095  Sum_probs=103.7

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEY   86 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~   86 (374)
                      ..|..+...|++++|+..|.+++..+|.++..++.+|.+|+++|+|++|+..|++++.++|+++.+|+.+|.+|..+|++
T Consensus         2 ~LG~~~~~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            2 PLGSMRRSKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             -----CCCHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HhHHHHHHcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCch
Confidence            35788889999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           87 ETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        87 ~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++|+.+|+++++++|++..+...++.+...+++.
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~  115 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVT  115 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCh
Confidence            9999999999999999999988888887665543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.53  E-value=2.7e-13  Score=120.53  Aligned_cols=111  Identities=16%  Similarity=0.304  Sum_probs=103.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p-~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      +..++..|..++..|+|++|+..|.+++..+| .+..+++.+|.||..+|++++|+.+|.+++.++|.+..+++.+|.+|
T Consensus         7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~   86 (228)
T 4i17_A            7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAY   86 (228)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHH
Confidence            35789999999999999999999999999999 88999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      ..+|++++|+.+|+++++++|++..+...+..
T Consensus        87 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~  118 (228)
T 4i17_A           87 RDMKNNQEYIATLTEGIKAVPGNATIEKLYAI  118 (228)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHcccHHHHHHHHHHHHHHCCCcHHHHHHHHH
Confidence            99999999999999999999999955333333

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.53  E-value=5.3e-13  Score=105.45  Aligned_cols=114  Identities=21%  Similarity=0.384  Sum_probs=107.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+.+|.+++...|.+..++..+|.+|...|++++|+..+++++.+.|.+..+++.+|.+++.
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~   89 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYK   89 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      +|++++|+.+|+++++++|++..+...+..+...
T Consensus        90 ~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           90 QGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            9999999999999999999999888888777554

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.52  E-value=1.2e-13  Score=144.62  Aligned_cols=116  Identities=19%  Similarity=0.202  Sum_probs=110.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..+.+.|..++..|+|++|+.+|.+||+++|+++.+|+++|.+|..+|++++|+..|++|++++|++..+|+++|.+|.
T Consensus        43 ~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~~~~a~~nLg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~  122 (723)
T 4gyw_A           43 AAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHK  122 (723)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+|++++|+.+|+++++++|++..+...++.+...+
T Consensus       123 ~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~  158 (723)
T 4gyw_A          123 DSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIV  158 (723)
T ss_dssp             HTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhc
Confidence            999999999999999999999999888887776543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.52  E-value=2.8e-13  Score=120.57  Aligned_cols=117  Identities=13%  Similarity=0.107  Sum_probs=102.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-----------cCHHHHHHHHHHHHHhCCCCHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-----------QNFTEAVADANRAIELEPSMSK   71 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l-----------~~~~~Al~~~~~al~l~p~~~~   71 (374)
                      ..++..|..++..|++++|+..|.+++.++|+++.+++.+|.+|..+           |++++|+..+++++.++|++..
T Consensus        40 ~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~  119 (217)
T 2pl2_A           40 EALYWLARTQLKLGLVNPALENGKTLVARTPRYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAP  119 (217)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHH
Confidence            45778899999999999999999999999999999999999999999           9999999999999999999999


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++.+|.++..+|++++|+.+|+++++++ ++..+...++.+...+++.
T Consensus       120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~~~~~~g~~  167 (217)
T 2pl2_A          120 LHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAELYLSMGRL  167 (217)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHHHHHHcCCH
Confidence            99999999999999999999999999998 8888888777776665544

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=99.51  E-value=2.7e-14  Score=136.44  Aligned_cols=118  Identities=22%  Similarity=0.296  Sum_probs=93.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-----------------HHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-----------------ELFADRAQASIKLQNFTEAVADANRAIE   64 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~-----------------~~~~~ra~~~~~l~~~~~Al~~~~~al~   64 (374)
                      +..++..|+.++..|+|++|+..|.+||.+.|.+.                 .+|+++|.||+++++|++|+.+|.+++.
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~l~~~~~~nla~~~~~~g~~~~A~~~~~~al~  258 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFMFQLYGKYQDMALAVKNPCHLNIAACLIKLKRYDEAIGHCNIVLT  258 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHHHTCCHHHHHHHHHHHTHHHHHHHHHHHTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchhhhhcccHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45688999999999999999999999999999877                 3899999999999999999999999999


Q ss_pred             hCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           65 LEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        65 l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++|++..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..+......
T Consensus       259 ~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~  313 (338)
T 2if4_A          259 EEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKA  313 (338)
T ss_dssp             HCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC---------------------
T ss_pred             hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999988888887555443

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.51  E-value=1.3e-13  Score=134.07  Aligned_cols=118  Identities=13%  Similarity=0.019  Sum_probs=109.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ..+...|..+...|+|++|+..|+++|.++|.+..+|++||.+|..+|+ +++|+.+|++++.++|++..+|+.+|.++.
T Consensus        98 ~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~  177 (382)
T 2h6f_A           98 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  177 (382)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            4677889999999999999999999999999999999999999999997 999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+|++++|+.+|+++++++|++..+...++.+...++..
T Consensus       178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~  216 (382)
T 2h6f_A          178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  216 (382)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCCh
Confidence            999999999999999999999999998888888777654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=99.50  E-value=1.1e-13  Score=117.27  Aligned_cols=107  Identities=14%  Similarity=0.221  Sum_probs=97.0

Q ss_pred             HHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264           12 AFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNF----------TEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~----------~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      .-+.+.|++|+..|.+++.++|+++.+|+++|.++..++++          ++|+..|++||+++|++..+|+++|.+|.
T Consensus        12 ~~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           12 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence            34567799999999999999999999999999999999875          59999999999999999999999999999


Q ss_pred             Hhc-----------CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           82 KLE-----------EYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        82 ~lg-----------~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      .+|           +|++|+.+|+++++++|++......+..+.+...
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al~~~~ka~e  139 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQ  139 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhCHh
Confidence            885           8999999999999999999988887777665443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.50  E-value=6.4e-13  Score=113.94  Aligned_cols=113  Identities=15%  Similarity=0.180  Sum_probs=81.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..+++.|..++..|+|++|+..|+++|+++|+++.++..+|.+|.++|++++|+..+.+++...|....+++.+|.++.
T Consensus         5 ~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (184)
T 3vtx_A            5 TTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANF   84 (184)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999998888888877777766655555554444444


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ..++++.|...+.+++.++|.+......++.+.
T Consensus        85 ~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~  117 (184)
T 3vtx_A           85 MIDEKQAAIDALQRAIALNTVYADAYYKLGLVY  117 (184)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCccchHHHHHHHHHH
Confidence            444444444444444444444444444444333

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.49  E-value=1.8e-13  Score=132.99  Aligned_cols=115  Identities=7%  Similarity=-0.031  Sum_probs=109.9

Q ss_pred             hHHHHHHHHHHHhccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~-y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      +..+..+|..+...|+ |++|+..|+++|.++|.+..+|++||.+|..+|++++|+.+|+++|.++|++..+|+.+|.++
T Consensus       131 ~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~  210 (382)
T 2h6f_A          131 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  210 (382)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHH
Confidence            3567899999999996 999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ..+|++++|+.+|+++++++|++..+...++.+...
T Consensus       211 ~~~g~~~eAl~~~~~al~l~P~~~~a~~~lg~~l~~  246 (382)
T 2h6f_A          211 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  246 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHcCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            999999999999999999999999998888888665

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.49  E-value=4.1e-13  Score=124.62  Aligned_cols=102  Identities=28%  Similarity=0.416  Sum_probs=99.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|+.++..|+|++|+.+|.+++..+|.++.+++++|.+|.++|++++|+.++++++.++|++..+++++|.+|+
T Consensus         4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (281)
T 2c2l_A            4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (281)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCC
Q 017264           82 KLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      .+|++++|+..|+++++++|++
T Consensus        84 ~~g~~~~A~~~~~~al~l~p~~  105 (281)
T 2c2l_A           84 EMESYDEAIANLQRAYSLAKEQ  105 (281)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCccc
Confidence            9999999999999999999876

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=99.48  E-value=2.8e-13  Score=105.25  Aligned_cols=102  Identities=17%  Similarity=0.201  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~   80 (374)
                      ..+...|..++..|+|++|+.+|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.  +..+++.+|.++
T Consensus         7 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~~   86 (112)
T 2kck_A            7 EEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADAL   86 (112)
T ss_dssp             TGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHHH
Confidence            345678999999999999999999999999999999999999999999999999999999999999  999999999999


Q ss_pred             HHh-cCHHHHHHHHHHHHhcCCCCh
Q 017264           81 MKL-EEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        81 ~~l-g~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ..+ |++++|+.+|++++...|.+.
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~p~~~  111 (112)
T 2kck_A           87 RYIEGKEVEAEIAEARAKLEHHHHH  111 (112)
T ss_dssp             TTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred             HHHhCCHHHHHHHHHHHhhcccCCC
Confidence            999 999999999999999998764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=99.48  E-value=5.8e-14  Score=112.37  Aligned_cols=100  Identities=17%  Similarity=0.102  Sum_probs=89.6

Q ss_pred             hccCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           14 IDDYFELAYDLYSQAIEI---SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~---~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      ..|+|++|+.+|.++|.+   +|.+..+++++|.+|..+|+|++|+..|++++.++|+++.+++.+|.+++.+|++++|+
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence            468999999999999999   68889999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHH
Q 017264           91 VALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+|++++.+.|+++.+......+
T Consensus        82 ~~~~~al~~~p~~~~~~~~~~ai  104 (117)
T 3k9i_A           82 ELLLKIIAETSDDETIQSYKQAI  104 (117)
T ss_dssp             HHHHHHHHHHCCCHHHHHTHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHH
Confidence            99999999999998876655444

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.47  E-value=9.3e-13  Score=117.05  Aligned_cols=117  Identities=14%  Similarity=0.083  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-------HHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-------KAYWRK   76 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-------~a~~~l   76 (374)
                      .++..|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|++.       .+|+.+
T Consensus        44 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  123 (228)
T 4i17_A           44 TAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKE  123 (228)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHH
Confidence            4667999999999999999999999999999999999999999999999999999999999999998       679999


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHHHHHhh
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPG--DSRFTNLIKECEERIAEE  120 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~--~~~~~~~~~~~~~~l~~~  120 (374)
                      |.+++.+|++++|+.+|+++++++|+  +......++.+...++..
T Consensus       124 g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~  169 (228)
T 4i17_A          124 GQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLFYNNGAD  169 (228)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999  888888888877665554

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.46  E-value=2e-12  Score=110.40  Aligned_cols=113  Identities=17%  Similarity=0.163  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHccCH--HHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA-SIKLQNF--TEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~-~~~l~~~--~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      ..+...|..++..|+|++|+.+|.+++..+|.++.++..+|.+ |...|++  ++|+..+.+++.++|++..+++.+|.+
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~  124 (177)
T 2e2e_A           45 EQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQTRAMIDKALALDSNEITALMLLASD  124 (177)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            4578899999999999999999999999999999999999999 8899999  999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      ++.+|++++|+.+|++++.++|++......+..+..
T Consensus       125 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~i~~  160 (177)
T 2e2e_A          125 AFMQANYAQAIELWQKVMDLNSPRINRTQLVESINM  160 (177)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTCCTTSCHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhhCCCCccHHHHHHHHHH
Confidence            999999999999999999999998765555554443

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.46  E-value=2.2e-12  Score=114.02  Aligned_cols=105  Identities=16%  Similarity=0.164  Sum_probs=92.8

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-----
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK-----   82 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~-----   82 (374)
                      .|..++..|+|++|+..|.++|+++|+++.+++.+|.+|..+|++++|+..|++++.++|+++.+++.+|.+|+.     
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~  139 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQE  139 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHH
Confidence            899999999999999999999999999999999999999999999999999999999999999888888777644     


Q ss_pred             ------------------------------hcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           83 ------------------------------LEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        83 ------------------------------lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                                                    +|+|++|+.+|+++++++|+.. ....+.++
T Consensus       140 ~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~~-~~~~l~~i  199 (208)
T 3urz_A          140 KKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPSTE-AQKTLDKI  199 (208)
T ss_dssp             HHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCHH-HHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCHH-HHHHHHHH
Confidence                                          3568899999999999999743 34444444

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.42  E-value=6.4e-12  Score=107.64  Aligned_cols=118  Identities=22%  Similarity=0.166  Sum_probs=97.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..+.+++...|.+..++..+|.++...++++.|+..+.+++.++|.+..+++.+|.+|..
T Consensus        40 ~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~  119 (184)
T 3vtx_A           40 ETLLKLGKTYMDIGLPNDAIESLKKFVVLDTTSAEAYYILGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDS  119 (184)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            45677888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.+|+++++++|.+..+...++.+...+++.
T Consensus       120 ~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~  157 (184)
T 3vtx_A          120 MGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR  157 (184)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             hCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence            88888888888888888888888777777776665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.41  E-value=9.1e-12  Score=108.98  Aligned_cols=102  Identities=15%  Similarity=0.085  Sum_probs=79.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH------------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS------------   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~------------   70 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.++.+++++|.+|..+|++++|+.+|.+++.+.|.+.            
T Consensus        38 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  117 (213)
T 1hh8_A           38 RICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFK  117 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCE
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccC
Confidence            35667777888888888888888888888888888888888888888888888888888888776655            


Q ss_pred             ----HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           71 ----KAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        71 ----~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                          .+++.+|.+++.+|++++|+.+|+++++++|++.
T Consensus       118 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~  155 (213)
T 1hh8_A          118 LFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  155 (213)
T ss_dssp             EEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcccc
Confidence                7778888888888888888888888888877654

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=99.41  E-value=5e-13  Score=133.65  Aligned_cols=114  Identities=31%  Similarity=0.505  Sum_probs=107.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|+|++|+.+|++|++++|.++.++.++|.+|.++|++++|+.++++|++++|+++.+++++|.+|+.+
T Consensus         8 ~~~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~   87 (477)
T 1wao_1            8 ELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL   87 (477)
T ss_dssp             TSSSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45567888999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      |++++|+.+|+++++++|++......++.+...+
T Consensus        88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~  121 (477)
T 1wao_1           88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIV  121 (477)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            9999999999999999999999988888884433

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.40  E-value=2.1e-13  Score=115.27  Aligned_cols=104  Identities=11%  Similarity=-0.081  Sum_probs=95.7

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHH
Q 017264           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        17 ~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a   96 (374)
                      ++-.+-..|.+++.++|+++.+++.+|.+++++|+|++|+..|++++.++|.++.+|+.+|.+|+.+|+|++|+.+|+++
T Consensus        17 ~~~~~~~~l~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~a   96 (151)
T 3gyz_A           17 DAINSGATLKDINAIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVA   96 (151)
T ss_dssp             HHHHTSCCTGGGCCSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHCCCCHHHHhCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHH
Confidence            33344456888899999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCCCChhHHHHHHHHHHHHHhh
Q 017264           97 ASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        97 ~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++++|+++.....++.|...+++.
T Consensus        97 l~l~P~~~~~~~~lg~~~~~lg~~  120 (151)
T 3gyz_A           97 FALGKNDYTPVFHTGQCQLRLKAP  120 (151)
T ss_dssp             HHHSSSCCHHHHHHHHHHHHTTCH
T ss_pred             HhhCCCCcHHHHHHHHHHHHcCCH
Confidence            999999999999999998877665

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.40  E-value=4.4e-12  Score=113.25  Aligned_cols=111  Identities=32%  Similarity=0.470  Sum_probs=103.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.++.++..+|.+|..+|++++|+..+.+++.++|++..+++.+|.++..
T Consensus       140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  219 (258)
T 3uq3_A          140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA  219 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcC------CCChhHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLA------PGDSRFTNLIKEC  113 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~------p~~~~~~~~~~~~  113 (374)
                      +|++++|+.+|+++++++      |.+..+...+.+|
T Consensus       220 ~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~  256 (258)
T 3uq3_A          220 VKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA  256 (258)
T ss_dssp             TTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred             HhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence            999999999999999999      8888877777665

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.40  E-value=9.1e-12  Score=99.19  Aligned_cols=114  Identities=21%  Similarity=0.327  Sum_probs=106.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.++...|++++|+..+.+++.+.|....+++.+|.+++.
T Consensus         2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            2 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             cHHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .|++++|+..|.+++...|.+......++.+...
T Consensus        82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~  115 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK  115 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            9999999999999999999988776666666543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.39  E-value=1e-11  Score=112.23  Aligned_cols=111  Identities=20%  Similarity=0.095  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+.+|.+++..+|.++.++..+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|+.
T Consensus        44 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~  123 (275)
T 1xnf_A           44 QLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYY  123 (275)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      +|++++|+.+|+++++++|++.....++..+
T Consensus       124 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  154 (275)
T 1xnf_A          124 GGRDKLAQDDLLAFYQDDPNDPFRSLWLYLA  154 (275)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence            9999999999999999999998655555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.39  E-value=4.2e-12  Score=115.42  Aligned_cols=106  Identities=14%  Similarity=0.144  Sum_probs=99.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~   75 (374)
                      ++.++..|..++..|+|++|+..|.+++...|.+   ..+++.+|.||+++|+|++|+..|++++.+.|+   ...+++.
T Consensus        15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~   94 (261)
T 3qky_A           15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE   94 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence            4578999999999999999999999999999999   899999999999999999999999999999884   4679999


Q ss_pred             HHHHHHH--------hcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           76 KATACMK--------LEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        76 lg~~~~~--------lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +|.+++.        +|++++|+..|++++...|++....
T Consensus        95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~  134 (261)
T 3qky_A           95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVD  134 (261)
T ss_dssp             HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHH
T ss_pred             HHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHH
Confidence            9999999        9999999999999999999987655

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.38  E-value=3.5e-13  Score=105.35  Aligned_cols=94  Identities=19%  Similarity=0.291  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------HHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------SKAYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~~a~~~   75 (374)
                      +..++..|..++..|+|++|+..|.+++..+|.++.+++++|.||..+|++++|+.++.+++.++|++      ..++++
T Consensus         4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~   83 (111)
T 2l6j_A            4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQYR   83 (111)
T ss_dssp             HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHHH
Confidence            35678899999999999999999999999999999999999999999999999999999999999998      889999


Q ss_pred             HHHHHHHhcCHHHHHHHHHH
Q 017264           76 KATACMKLEEYETAKVALEK   95 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~   95 (374)
                      +|.++..+|+++.|+..|++
T Consensus        84 ~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           84 LELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHhHhhhHhHHHH
Confidence            99999999988887766654

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.38  E-value=6.6e-12  Score=109.88  Aligned_cols=114  Identities=19%  Similarity=0.194  Sum_probs=102.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++  ++ ++.+++++|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|+.
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~--~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~   83 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ--DP-HSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   83 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS--SC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc--CC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence            357899999999999999999999996  34 689999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCh----------------hHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDS----------------RFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~----------------~~~~~~~~~~~~l~~  119 (374)
                      +|+|++|+.+|++++++.|.+.                .+...++.+...+++
T Consensus        84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  136 (213)
T 1hh8_A           84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEE  136 (213)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTC
T ss_pred             cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccC
Confidence            9999999999999999998877                677777776655443

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.36  E-value=2.5e-11  Score=102.33  Aligned_cols=116  Identities=13%  Similarity=0.145  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+.+|.+++...|.+..++..+|.+|...|++++|+..+.+++.+.|.+..+++.+|.++..
T Consensus        43 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~  122 (186)
T 3as5_A           43 DVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDN  122 (186)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHH
Confidence            34567788888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      +|++++|+.+|++++...|.+..+...++.+...++
T Consensus       123 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~  158 (186)
T 3as5_A          123 LGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMG  158 (186)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             cCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcC
Confidence            888888888888888888888777766666655443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=99.36  E-value=1.4e-11  Score=97.74  Aligned_cols=101  Identities=16%  Similarity=0.187  Sum_probs=90.2

Q ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           20 LAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        20 ~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      .|+..|.+++..+|.++.+++.+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+|..+|++++|+.+|++++.+
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~   82 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA   82 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            58999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCC--ChhHHHHHHHHHHHHHhh
Q 017264          100 APG--DSRFTNLIKECEERIAEE  120 (374)
Q Consensus       100 ~p~--~~~~~~~~~~~~~~l~~~  120 (374)
                      .|.  +......+..+...+...
T Consensus        83 ~~~~~~~~~~~~l~~~l~~l~~~  105 (115)
T 2kat_A           83 AQSRGDQQVVKELQVFLRRLARE  105 (115)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHHH
T ss_pred             ccccccHHHHHHHHHHHHHhccc
Confidence            874  344555555555555554

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=8.2e-12  Score=124.50  Aligned_cols=118  Identities=14%  Similarity=0.021  Sum_probs=111.5

Q ss_pred             HHHHHHHHHHHhc---------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc--------cCHHHHHHHHHHHHHh
Q 017264            3 TDLEKKAKEAFID---------DYFELAYDLYSQAIEISPNSAELFADRAQASIKL--------QNFTEAVADANRAIEL   65 (374)
Q Consensus         3 ~~l~~~g~~~~~~---------~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l--------~~~~~Al~~~~~al~l   65 (374)
                      ..+...|..++..         |+|++|+..|.+++.++|.+..+++++|.+|..+        |++++|+..|++++.+
T Consensus       171 ~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~  250 (474)
T 4abn_A          171 VSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV  250 (474)
T ss_dssp             HHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh
Confidence            3567889999999         9999999999999999999999999999999999        9999999999999999


Q ss_pred             CC---CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           66 EP---SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        66 ~p---~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|   .++.+|+++|.+|+.+|+|++|+.+|+++++++|++......++.+...+++.
T Consensus       251 ~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~  308 (474)
T 4abn_A          251 DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRL  308 (474)
T ss_dssp             CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            99   99999999999999999999999999999999999999888888888777665

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.35  E-value=3.4e-11  Score=112.49  Aligned_cols=116  Identities=19%  Similarity=0.217  Sum_probs=108.8

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH----HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE----LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~----~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ....|..++..|+|++|+..|.+++...|.+..    ++..+|.+|..+|++++|+..+.+++.++|+++.+++.+|.++
T Consensus       237 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  316 (359)
T 3ieg_A          237 LIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAY  316 (359)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            456699999999999999999999999999874    4667999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ..+|++++|+.+|+++++++|++..+...+.++...+++.
T Consensus       317 ~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~  356 (359)
T 3ieg_A          317 LIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLLKQS  356 (359)
T ss_dssp             HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999998888765

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.33  E-value=1.8e-11  Score=124.26  Aligned_cols=116  Identities=15%  Similarity=0.082  Sum_probs=109.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..+...|..++..|+|++|+.+|.++++++|++..++.++|.+|..+|++++|+..+++++.++|++..+++.+|.+|.
T Consensus        23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  102 (568)
T 2vsy_A           23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALE  102 (568)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+|++++|+.+|+++++++|++......++.+...+
T Consensus       103 ~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  138 (568)
T 2vsy_A          103 DAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRL  138 (568)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            999999999999999999999998888877777666

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.33  E-value=1.9e-11  Score=103.12  Aligned_cols=117  Identities=13%  Similarity=0.062  Sum_probs=108.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.+++...|.+..++..+|.+|..+|++++|+..+.+++.+.|.+..+++.+|.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~   88 (186)
T 3as5_A            9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTYVQ   88 (186)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .|++++|+.+|++++...|.+..+...++.+...++.
T Consensus        89 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  125 (186)
T 3as5_A           89 VQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGR  125 (186)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             hcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCc
Confidence            9999999999999999999998877777776655443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.32  E-value=2.4e-11  Score=114.81  Aligned_cols=118  Identities=15%  Similarity=0.195  Sum_probs=105.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+.+|.+++..+|.++.++..+|.+|..+|++++|+..|++++.++|.+..+++.+|.+|..
T Consensus       218 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  297 (368)
T 1fch_A          218 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  297 (368)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCC-----------hhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGD-----------SRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~-----------~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.+|++++.+.|++           ..+...++.+...+++.
T Consensus       298 ~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  346 (368)
T 1fch_A          298 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS  346 (368)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred             CCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence            999999999999999998887           67777777777776654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.32  E-value=6.1e-11  Score=105.11  Aligned_cols=115  Identities=17%  Similarity=0.165  Sum_probs=85.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|++++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|.+++.+
T Consensus        59 ~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~  138 (243)
T 2q7f_A           59 PYINFANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKL  138 (243)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      |++++|+..|++++.+.|.+..+...++.+...++
T Consensus       139 ~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  173 (243)
T 2q7f_A          139 EQPKLALPYLQRAVELNENDTEARFQFGMCLANEG  173 (243)
T ss_dssp             SCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             ccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcC
Confidence            77777777777777777777766666655554433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.32  E-value=3.2e-11  Score=107.60  Aligned_cols=106  Identities=17%  Similarity=0.137  Sum_probs=97.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH---HHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK---AYWR   75 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~---a~~~   75 (374)
                      +..++..|..++..|+|++|+..|.+++...|.+   ..+++.+|.+|+++|++++|+..|++++.+.|++..   +++.
T Consensus         4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~   83 (225)
T 2yhc_A            4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM   83 (225)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence            4578899999999999999999999999998886   478999999999999999999999999999998764   8999


Q ss_pred             HHHHHHH------------------hcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           76 KATACMK------------------LEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        76 lg~~~~~------------------lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +|.+++.                  +|++++|+..|+++++..|++....
T Consensus        84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~  133 (225)
T 2yhc_A           84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTT  133 (225)
T ss_dssp             HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHH
T ss_pred             HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHH
Confidence            9999987                  5799999999999999999987544

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.32  E-value=2.4e-11  Score=112.96  Aligned_cols=117  Identities=15%  Similarity=0.053  Sum_probs=104.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH------------------------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD------------------------   58 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~------------------------   58 (374)
                      +.++..|..++..|++++|+..|.+++..+|+++.+++.+|.+|..+|++++|+..                        
T Consensus       118 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~~l~~  197 (287)
T 3qou_A          118 ELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQIELLX  197 (287)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHHHHHh
Confidence            45788999999999999999999999999999999999999999999998887544                        


Q ss_pred             ----------HHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHh
Q 017264           59 ----------ANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE  119 (374)
Q Consensus        59 ----------~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~~~~~~l~~  119 (374)
                                +++++.++|++..+++.+|.+|...|++++|+..|.++++++|++  ...+..+..+...++.
T Consensus       198 ~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~  270 (287)
T 3qou_A          198 QAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGT  270 (287)
T ss_dssp             HHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCT
T ss_pred             hcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCC
Confidence                      555677899999999999999999999999999999999999998  6677777777766654

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.32  E-value=2.4e-11  Score=108.41  Aligned_cols=119  Identities=15%  Similarity=0.172  Sum_probs=108.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHH--------------------------hCCCCHHHHHHHHHHHHHccCHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIE--------------------------ISPNSAELFADRAQASIKLQNFTEA   55 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~--------------------------~~p~~~~~~~~ra~~~~~l~~~~~A   55 (374)
                      +..+...|..++..|++++|+..|.+++.                          .+|.+..++..+|.+|..+|++++|
T Consensus        79 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A  158 (258)
T 3uq3_A           79 SKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPEKAEEARLEGKEYFTKSDWPNA  158 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHhcCHHHH
Confidence            35677899999999999999999999999                          6677788999999999999999999


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           56 VADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        56 l~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +..+++++.++|.+..+++.+|.+++.+|++++|+.+|+++++++|++......++.+...++..
T Consensus       159 ~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~  223 (258)
T 3uq3_A          159 VKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEY  223 (258)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhH
Confidence            99999999999999999999999999999999999999999999999998888888877665543

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.32  E-value=1.9e-11  Score=115.95  Aligned_cols=116  Identities=16%  Similarity=0.234  Sum_probs=83.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|+|++|+..|.+++..+|.++.++..+|.+|..+|++++|+..|++++.++|++..+++.+|.+|..+
T Consensus       215 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  294 (365)
T 4eqf_A          215 LQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINL  294 (365)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHC
Confidence            45667777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             cCHHHHHHHHHHHHhcCCCC------------hhHHHHHHHHHHHHHh
Q 017264           84 EEYETAKVALEKGASLAPGD------------SRFTNLIKECEERIAE  119 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~------------~~~~~~~~~~~~~l~~  119 (374)
                      |++++|+.+|++++++.|+.            ..+...+..+...+++
T Consensus       295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  342 (365)
T 4eqf_A          295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ  342 (365)
T ss_dssp             TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred             CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence            77777777777777776652            3445555555554443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.31  E-value=6.3e-12  Score=102.36  Aligned_cols=94  Identities=18%  Similarity=0.165  Sum_probs=86.2

Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhH
Q 017264           27 QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRF  106 (374)
Q Consensus        27 ~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~  106 (374)
                      ++..++|..+..+.++|.+|++.|+|++|+..|.+++.++|.++.+|+.+|.+|+.+|++++|+.+|+++++++|++...
T Consensus         4 r~a~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a   83 (126)
T 4gco_A            4 RLAYINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKG   83 (126)
T ss_dssp             ---CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHH
Confidence            44557899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhh
Q 017264          107 TNLIKECEERIAEE  120 (374)
Q Consensus       107 ~~~~~~~~~~l~~~  120 (374)
                      ...++.+...++..
T Consensus        84 ~~~lg~~~~~~~~~   97 (126)
T 4gco_A           84 YIRKAACLVAMREW   97 (126)
T ss_dssp             HHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHCCCH
Confidence            88888888776554

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.31  E-value=4.3e-11  Score=111.78  Aligned_cols=110  Identities=14%  Similarity=0.179  Sum_probs=104.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      ++.++..|..++..|+|++|+..|.+++..+|.++.+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++.
T Consensus         3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~   82 (359)
T 3ieg_A            3 VEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLL   82 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCC---CChhHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAP---GDSRFTNLIK  111 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p---~~~~~~~~~~  111 (374)
                      .+|++++|+.+|++++.++|   ++......+.
T Consensus        83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~  115 (359)
T 3ieg_A           83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLV  115 (359)
T ss_dssp             HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHH
T ss_pred             HcCChHHHHHHHHHHHhcCCcccChHHHHHHHH
Confidence            99999999999999999999   7776665553

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.31  E-value=4.4e-11  Score=106.02  Aligned_cols=117  Identities=15%  Similarity=0.135  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.+++...|.+..++..+|.+|..+|++++|+..+.+++.+.|.+..+++.+|.+++.
T Consensus        92 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  171 (243)
T 2q7f_A           92 TAYYGAGNVYVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLAN  171 (243)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .|++++|+.+|++++...|++..+...++.+...++.
T Consensus       172 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  208 (243)
T 2q7f_A          172 EGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKEN  208 (243)
T ss_dssp             HTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             cCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccC
Confidence            9999999999999999999988888777777665444

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.31  E-value=1.5e-11  Score=122.61  Aligned_cols=115  Identities=15%  Similarity=0.071  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHhccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y-~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      +..++..|..++..|+| ++|+.+|.++++++|.++.+++.+|.+|..+|++++|+..|++++.++|+ ..+++.+|.+|
T Consensus       102 a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~lg~~~  180 (474)
T 4abn_A          102 AQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHCKN-KVSLQNLSMVL  180 (474)
T ss_dssp             HHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCCC-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-HHHHHHHHHHH
Confidence            45678999999999999 99999999999999999999999999999999999999999999999999 79999999999


Q ss_pred             HHh---------cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           81 MKL---------EEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        81 ~~l---------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      ..+         |++++|+.+|+++++++|++......++.+...+
T Consensus       181 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~  226 (474)
T 4abn_A          181 RQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSL  226 (474)
T ss_dssp             TTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            999         9999999999999999999998888887777655

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.31  E-value=5.6e-12  Score=131.37  Aligned_cols=117  Identities=9%  Similarity=-0.083  Sum_probs=106.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|+++++.+|++..+++++|.+|..+|++++|+.+|++|++++|++..+++++|.+|..
T Consensus       434 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~  513 (681)
T 2pzi_A          434 ELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAEL  513 (681)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45778899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|+|++ +.+|+++++++|++..+...++.+...+++.
T Consensus       514 ~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~  550 (681)
T 2pzi_A          514 AGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDR  550 (681)
T ss_dssp             HTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred             cCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCH
Confidence            999999 9999999999999998888888887766554

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.30  E-value=2.5e-11  Score=109.89  Aligned_cols=116  Identities=16%  Similarity=0.132  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+++++.++|.+..+++.+|..++.
T Consensus        75 ~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~  154 (272)
T 3u4t_A           75 ADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYY  154 (272)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHH
Confidence            44677788888888888888888888888888888888888888888888888888888888888888888888855555


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      .+++++|+.+|+++++++|++.....+++.+...++
T Consensus       155 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~  190 (272)
T 3u4t_A          155 NKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQD  190 (272)
T ss_dssp             TTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcC
Confidence            568888888888888888887777666666666554

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.29  E-value=7.2e-11  Score=103.04  Aligned_cols=115  Identities=12%  Similarity=0.034  Sum_probs=95.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+++.
T Consensus         9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~   88 (225)
T 2vq2_A            9 NIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCG   88 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHH
Confidence            45677888899999999999999999999998888889999999999999999999999999999888889999999999


Q ss_pred             h-cCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHHH
Q 017264           83 L-EEYETAKVALEKGAS--LAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        83 l-g~~~eA~~~~~~a~~--l~p~~~~~~~~~~~~~~~l  117 (374)
                      + |++++|+.+|++++.  ..|.+..+...++.+...+
T Consensus        89 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  126 (225)
T 2vq2_A           89 RLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQ  126 (225)
T ss_dssp             TTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHT
T ss_pred             hcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHc
Confidence            9 999999999999888  4555555555566555443

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.29  E-value=4.2e-11  Score=108.71  Aligned_cols=116  Identities=18%  Similarity=0.085  Sum_probs=102.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHH--------ccCHHHHHHHHHHHHHhCCCCH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIK--------LQNFTEAVADANRAIELEPSMS   70 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~--------l~~~~~Al~~~~~al~l~p~~~   70 (374)
                      ...++..|..++..|+|++|+..|.+++...|.+   ..+++.+|.||..        +|++++|+..|++++.+.|++.
T Consensus        52 ~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~  131 (261)
T 3qky_A           52 ADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHE  131 (261)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCT
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCch
Confidence            3567899999999999999999999999998854   6789999999999        9999999999999999999876


Q ss_pred             HHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHH
Q 017264           71 KAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERI  117 (374)
Q Consensus        71 ~a~-----------------~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l  117 (374)
                      .+.                 +.+|.+|+.+|+|++|+.+|++++...|++.   .+..+++.+...+
T Consensus       132 ~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~  198 (261)
T 3qky_A          132 LVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAY  198 (261)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHh
Confidence            555                 8999999999999999999999999999854   4666666666555

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.29  E-value=4.9e-12  Score=105.90  Aligned_cols=99  Identities=17%  Similarity=0.131  Sum_probs=92.2

Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           22 YDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        22 l~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      -..|.+++.++|.+..+++.+|.+++..|+|++|+..|.+++.++|.++.+|+.+|.+|..+|+|++|+.+|++++.++|
T Consensus         7 ~~~~~~al~~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            7 GGTIAMLNEISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             CCSHHHHTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hhhHHHHHcCCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            34588999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhHHHHHHHHHHHHHhh
Q 017264          102 GDSRFTNLIKECEERIAEE  120 (374)
Q Consensus       102 ~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++......++.+...+++.
T Consensus        87 ~~~~~~~~lg~~~~~~g~~  105 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGEL  105 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCH
T ss_pred             CCchHHHHHHHHHHHcCCH
Confidence            9999888888887765554

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.29  E-value=8.8e-11  Score=93.33  Aligned_cols=99  Identities=24%  Similarity=0.402  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|++++|+.+|.+++...|.+..++..+|.++..+|++++|+..+.+++.+.|....+++.+|.+++.+
T Consensus        37 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~  116 (136)
T 2fo7_A           37 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQ  116 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCC
Q 017264           84 EEYETAKVALEKGASLAPG  102 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~  102 (374)
                      |++++|+.+|.+++.++|+
T Consensus       117 ~~~~~A~~~~~~~~~~~~~  135 (136)
T 2fo7_A          117 GDYDEAIEYYQKALELDPR  135 (136)
T ss_dssp             TCHHHHHHHHHHHHHHSTT
T ss_pred             ccHHHHHHHHHHHHccCCC
Confidence            9999999999999998886

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.28  E-value=7.3e-12  Score=130.53  Aligned_cols=112  Identities=10%  Similarity=-0.064  Sum_probs=106.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|++|+..|+++|+++|+++.+++++|.+|.++|++++ +.+|++|++++|++..+|+++|.+|.
T Consensus       467 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~  545 (681)
T 2pzi_A          467 WRLVWYRAVAELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARS  545 (681)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999 99999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+|++++|+.+|+++++++|++..+...++.+.
T Consensus       546 ~~g~~~~A~~~~~~al~l~P~~~~a~~~~~~~~  578 (681)
T 2pzi_A          546 AEGDRVGAVRTLDEVPPTSRHFTTARLTSAVTL  578 (681)
T ss_dssp             HTTCHHHHHHHHHTSCTTSTTHHHHHHHHHHHT
T ss_pred             HcCCHHHHHHHHHhhcccCcccHHHHHHHHHHH
Confidence            999999999999999999999988777776664

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.28  E-value=1.6e-11  Score=111.09  Aligned_cols=118  Identities=13%  Similarity=0.026  Sum_probs=106.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--C-CHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP--S-MSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p--~-~~~a~~~lg~~   79 (374)
                      +.++..|..++..|+|++|+..|.++++.+|.+..++..+|.+|..+|++++|+..+.+++...+  . ...+++.+|.+
T Consensus         4 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            4 DVEFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             -CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999432  2 25669999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +..+|++++|+.+|+++++++|.+..+...++.+...++..
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~  124 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNF  124 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCH
Confidence            99999999999999999999999999888888888776654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.28  E-value=3e-11  Score=114.58  Aligned_cols=115  Identities=16%  Similarity=0.122  Sum_probs=101.9

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      ...|..+...|++++|+.+|.+++..+|.  ++.++..+|.+|..+|++++|+..|++++.++|.+..+|+.+|.+|..+
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  260 (365)
T 4eqf_A          181 RRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANG  260 (365)
T ss_dssp             --------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            34588999999999999999999999999  8999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++++|+.+|+++++++|++..+...++.+...+++.
T Consensus       261 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~  297 (365)
T 4eqf_A          261 DRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAY  297 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCH
Confidence            9999999999999999999998888888887765543

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.27  E-value=1.2e-10  Score=101.58  Aligned_cols=116  Identities=16%  Similarity=0.100  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-cCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-QNFTEAVADANRAIE--LEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l-~~~~~Al~~~~~al~--l~p~~~~a~~~lg~~~   80 (374)
                      .+...|..++..|++++|+.+|.+++..+|.+..++..+|.+|..+ |++++|+..+++++.  ..|....+++.+|.++
T Consensus        44 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~  123 (225)
T 2vq2_A           44 AWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICS  123 (225)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHH
Confidence            4567888888889999999999999988888888888889999888 899999999988888  5666678888889999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ..+|++++|+.+|+++++..|.+..+...++.+...++.
T Consensus       124 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~  162 (225)
T 2vq2_A          124 AKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQ  162 (225)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTC
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCC
Confidence            999999999999998888888888777777776655444

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.27  E-value=4.6e-11  Score=102.24  Aligned_cols=116  Identities=11%  Similarity=0.071  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHH------------------------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADA------------------------   59 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~------------------------   59 (374)
                      .++..|..++..|+|++|+..|.+++..+|+++.+++.+|.+|..+|++++|+..+                        
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~   87 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELHQQ   87 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHHhh
Confidence            45778888888888888888888888888888888888888888888877765544                        


Q ss_pred             ----------HHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC--hhHHHHHHHHHHHHHh
Q 017264           60 ----------NRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD--SRFTNLIKECEERIAE  119 (374)
Q Consensus        60 ----------~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~--~~~~~~~~~~~~~l~~  119 (374)
                                ++++.++|++..+++.+|.++..+|++++|+.+|+++++++|+.  ......+..+...++.
T Consensus        88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~  159 (176)
T 2r5s_A           88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQ  159 (176)
T ss_dssp             HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCS
T ss_pred             cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCC
Confidence                      44556678888888999999999999999999999999988875  3466666666655543

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.27  E-value=5.8e-11  Score=106.28  Aligned_cols=114  Identities=18%  Similarity=0.077  Sum_probs=82.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+|+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~  117 (252)
T 2ho1_A           38 DAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYE  117 (252)
T ss_dssp             HHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHH
Confidence            34566777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hcCHHHHHHHHHHHHh--cCCCChhHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGAS--LAPGDSRFTNLIKECEER  116 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~--l~p~~~~~~~~~~~~~~~  116 (374)
                      +|++++|+.+|++++.  ..|.+..+...++.+...
T Consensus       118 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~  153 (252)
T 2ho1_A          118 QKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQ  153 (252)
T ss_dssp             TTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHH
Confidence            7777777777777777  555555555555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.26  E-value=9.5e-11  Score=104.88  Aligned_cols=117  Identities=15%  Similarity=0.110  Sum_probs=96.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE--LEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~--l~p~~~~a~~~lg~~~   80 (374)
                      ..+...|..++..|++++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.  ..|....+++.+|.++
T Consensus        72 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~  151 (252)
T 2ho1_A           72 DAHAALAVVFQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVS  151 (252)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHH
Confidence            34667788888888888888888888888888888888888888888888888888888888  7777888888888888


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +.+|++++|+.+|++++++.|.+..+...++.+...++.
T Consensus       152 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  190 (252)
T 2ho1_A          152 LQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKERE  190 (252)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred             HHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCC
Confidence            888888888888888888888887777776666554433

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.25  E-value=1.3e-10  Score=114.59  Aligned_cols=103  Identities=20%  Similarity=0.313  Sum_probs=98.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|+.++..|+|++|+..|++++..+| ++.++..+|.||.++|++++|+.++++++.++|++..+++.+|.+|+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999 59999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .+|++++|+.+|++++.+.|.+..
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~  108 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDA  108 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGG
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccc
Confidence            999999999999999999986654

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.25  E-value=5.4e-11  Score=113.95  Aligned_cols=115  Identities=19%  Similarity=0.160  Sum_probs=98.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.+++..+|.++.++..+|.+|.++|++++|+..|++++.++|.+..+++.+|.++..
T Consensus       238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  317 (388)
T 1w3b_A          238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHH
Confidence            34667888888999999999999999998888888888899999889999999999999999988888888889999989


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .|++++|+.+|+++++++|++......++.+...+
T Consensus       318 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  352 (388)
T 1w3b_A          318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQ  352 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTT
T ss_pred             cCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHc
Confidence            99999999999988888888887777777665443

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.25  E-value=1.4e-11  Score=105.09  Aligned_cols=112  Identities=13%  Similarity=0.127  Sum_probs=98.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH-HHHhcCH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA-CMKLEEY   86 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~-~~~lg~~   86 (374)
                      .+..++..|+|++|+..|.+++..+|.++.+++.+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+ ++..|++
T Consensus        16 ~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~   95 (177)
T 2e2e_A           16 PLHQFASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH   95 (177)
T ss_dssp             TTCCCC-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred             hhhhhhhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence            345567889999999999999999999999999999999999999999999999999999999999999999 7899999


Q ss_pred             --HHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           87 --ETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        87 --~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                        ++|+.+|++++.++|++..+...++.+...++.
T Consensus        96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~  130 (177)
T 2e2e_A           96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQAN  130 (177)
T ss_dssp             CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccc
Confidence              999999999999999999888888877665444

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.25  E-value=1.7e-10  Score=112.07  Aligned_cols=108  Identities=14%  Similarity=0.198  Sum_probs=102.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..++..|..++..|+|++|+.+|++++..+|.++.+++.+|.+|..+|++++|+..|.+++.++|++..+++.+|.+|..
T Consensus        27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  106 (450)
T 2y4t_A           27 EKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLK  106 (450)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCCh---hHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDS---RFTNLI  110 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~---~~~~~~  110 (374)
                      +|++++|+.+|++++.++|++.   .....+
T Consensus       107 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l  137 (450)
T 2y4t_A          107 QGKLDEAEDDFKKVLKSNPSENEEKEAQSQL  137 (450)
T ss_dssp             TTCHHHHHHHHHHHHTSCCCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCChhhHHHHHHH
Confidence            9999999999999999999887   554443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.25  E-value=1.1e-10  Score=107.88  Aligned_cols=118  Identities=14%  Similarity=0.223  Sum_probs=106.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus       173 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  252 (327)
T 3cv0_A          173 QLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSN  252 (327)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            35677899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCC------------ChhHHHHHHHHHHHHHhh
Q 017264           83 LEEYETAKVALEKGASLAPG------------DSRFTNLIKECEERIAEE  120 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~------------~~~~~~~~~~~~~~l~~~  120 (374)
                      +|++++|+.+|++++.+.|.            +......++.+...+++.
T Consensus       253 ~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  302 (327)
T 3cv0_A          253 MSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRP  302 (327)
T ss_dssp             TTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCH
T ss_pred             hccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCH
Confidence            99999999999999999998            566777777776665544

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.24  E-value=1.9e-10  Score=111.73  Aligned_cols=116  Identities=18%  Similarity=0.209  Sum_probs=108.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~----~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      +...|..++..|+|++|+.+|.+++...|.++    .++..+|.+|.++|++++|+..+++++.++|++..+|+.+|.+|
T Consensus       260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~  339 (450)
T 2y4t_A          260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAY  339 (450)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35569999999999999999999999999985    47899999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ..+|++++|+.+|+++++++|++..+...+..+...++..
T Consensus       340 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  379 (450)
T 2y4t_A          340 LIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQS  379 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcc
Confidence            9999999999999999999999999999999888877665

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.24  E-value=1.2e-10  Score=111.40  Aligned_cols=112  Identities=15%  Similarity=0.100  Sum_probs=70.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +...|..+...|++++|+..|.+++..+|++..++..+|.++..+|++++|+..+.+++.++|++..+++.+|.+++.+|
T Consensus       172 ~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g  251 (388)
T 1w3b_A          172 WSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACVYYEQG  251 (388)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHHHHHcC
Confidence            44556666666666666666666666666666666666666666666666666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++++|+.+|+++++++|++......++.+...
T Consensus       252 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  283 (388)
T 1w3b_A          252 LIDLAIDTYRRAIELQPHFPDAYCNLANALKE  283 (388)
T ss_dssp             CHHHHHHHHHHHHHTCSSCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHH
Confidence            66666666666666666666555555544443

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.24  E-value=8.8e-11  Score=108.68  Aligned_cols=112  Identities=17%  Similarity=0.209  Sum_probs=105.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhC---------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS---------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAY   73 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~---------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~   73 (374)
                      ..+...|..++..|+|++|+..|.+++...         |....++..+|.+|..+|++++|+..+++++.++|.+..++
T Consensus       194 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  273 (330)
T 3hym_B          194 FVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTY  273 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHH
Confidence            456789999999999999999999999986         67788999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           74 WRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      +.+|.++..+|++++|+.+|+++++++|++......+..+.
T Consensus       274 ~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~  314 (330)
T 3hym_B          274 SAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHH
Confidence            99999999999999999999999999999998888888775

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.22  E-value=1.6e-10  Score=106.88  Aligned_cols=115  Identities=11%  Similarity=-0.027  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         4 ~l~~~g~~~~~~~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .+...|..++..| ++++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.+.|....+++.+|.++..
T Consensus        92 ~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~  171 (330)
T 3hym_B           92 SWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGL  171 (330)
T ss_dssp             HHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHH
Confidence            4567777888888 788888888888888888888888888888888888888888888888888877788888888888


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      +|++++|+.+|++++.++|.+..+...++.+...++
T Consensus       172 ~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~  207 (330)
T 3hym_B          172 TNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNG  207 (330)
T ss_dssp             TTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTT
T ss_pred             HhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcc
Confidence            888888888888888888887776666666655433

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.22  E-value=1e-10  Score=104.22  Aligned_cols=118  Identities=11%  Similarity=0.074  Sum_probs=102.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH---HHHHHHHHHHH------------------ccCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE---LFADRAQASIK------------------LQNFTEAVADANR   61 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~---~~~~ra~~~~~------------------l~~~~~Al~~~~~   61 (374)
                      ..++..|..++..|+|++|+..|+++++.+|++..   +++.+|.+|..                  +|++++|+..|++
T Consensus        42 ~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~  121 (225)
T 2yhc_A           42 QVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSK  121 (225)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHH
Confidence            46788999999999999999999999999999864   78999999986                  5799999999999


Q ss_pred             HHHhCCCCHHHH-----------------HHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh---hHHHHHHHHHHHHHhh
Q 017264           62 AIELEPSMSKAY-----------------WRKATACMKLEEYETAKVALEKGASLAPGDS---RFTNLIKECEERIAEE  120 (374)
Q Consensus        62 al~l~p~~~~a~-----------------~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~---~~~~~~~~~~~~l~~~  120 (374)
                      ++...|++..++                 +.+|.+|+..|+|.+|+..|+++++..|+++   .+...++.+..+++..
T Consensus       122 ~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~  200 (225)
T 2yhc_A          122 LVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMN  200 (225)
T ss_dssp             HHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCc
Confidence            999999876543                 6789999999999999999999999999987   4566667666665544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=99.22  E-value=2.8e-11  Score=93.00  Aligned_cols=92  Identities=18%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~-~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+..|..++..|+|++|+..|.+++..+|.++. +++.+|.+|..+|++++|+..|.+++.++|++..++++        
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------   74 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------   74 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------
Confidence            367888899999999999999999999999988 99999999999999999999999999999988887754        


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 017264           84 EEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~  104 (374)
                      +.+.+|+.+|.++..++|++.
T Consensus        75 ~~~~~a~~~~~~~~~~~p~~~   95 (99)
T 2kc7_A           75 KMVMDILNFYNKDMYNQLEHH   95 (99)
T ss_dssp             HHHHHHHHHHCCTTHHHHCCS
T ss_pred             HHHHHHHHHHHHHhccCcccc
Confidence            566777888887777776553

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.22  E-value=2.3e-11  Score=100.49  Aligned_cols=98  Identities=14%  Similarity=0.137  Sum_probs=88.8

Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           23 DLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        23 ~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ..|.+++..+|.+...++.+|.++++.|+|++|+..|.+++.++|.++.+|+.+|.+|..+|+|++|+.+|++++.++|+
T Consensus         5 ~~l~~al~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~   84 (142)
T 2xcb_A            5 GTLAMLRGLSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN   84 (142)
T ss_dssp             ----CCTTCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred             hhHHHHHcCCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC
Confidence            46788899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ChhHHHHHHHHHHHHHhh
Q 017264          103 DSRFTNLIKECEERIAEE  120 (374)
Q Consensus       103 ~~~~~~~~~~~~~~l~~~  120 (374)
                      +......++.+...+++.
T Consensus        85 ~~~~~~~lg~~~~~~g~~  102 (142)
T 2xcb_A           85 EPRFPFHAAECHLQLGDL  102 (142)
T ss_dssp             CTHHHHHHHHHHHHTTCH
T ss_pred             CcHHHHHHHHHHHHcCCH
Confidence            999888888887765554

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.22  E-value=2e-10  Score=86.09  Aligned_cols=80  Identities=24%  Similarity=0.344  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|+|++|+.+|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~   90 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQ   90 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhc
Confidence            34455555566666666666666666666655555666666666666666666666666666666555666665555544

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.21  E-value=1.8e-10  Score=108.81  Aligned_cols=104  Identities=14%  Similarity=0.120  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..|.+++.++|.+..+++.+|.++..+
T Consensus        66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      |++++|+..|++++.+.|.+....
T Consensus       146 g~~~~A~~~~~~~~~~~~~~~~~~  169 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPAYAHLV  169 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGGGC
T ss_pred             CCHHHHHHHHHHHHHhCcCcHHHH
Confidence            999999999999999999876543

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.20  E-value=2.7e-10  Score=106.14  Aligned_cols=97  Identities=8%  Similarity=0.070  Sum_probs=66.8

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHH-HHHH
Q 017264           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYET-AKVA   92 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~e-A~~~   92 (374)
                      ..|+|++|+..|++++..+|.++.+++++|.+|.++|++++|+..+++++.++|+++.+++++|.++..+|++.+ +..+
T Consensus       178 ~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~  257 (291)
T 3mkr_A          178 GGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRY  257 (291)
T ss_dssp             CTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred             CchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence            346677777777777777777777777777777777777777777777777777777777777777777777655 3466


Q ss_pred             HHHHHhcCCCChhHHHHH
Q 017264           93 LEKGASLAPGDSRFTNLI  110 (374)
Q Consensus        93 ~~~a~~l~p~~~~~~~~~  110 (374)
                      ++++++++|+++.+....
T Consensus       258 ~~~~~~~~P~~~~~~d~~  275 (291)
T 3mkr_A          258 LSQLKDAHRSHPFIKEYR  275 (291)
T ss_dssp             HHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHhCCCChHHHHHH
Confidence            677777777776655443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.18  E-value=9.3e-11  Score=116.53  Aligned_cols=103  Identities=25%  Similarity=0.378  Sum_probs=92.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++..|..++..|+|++|+..|++++..+|+++.++..+|.||..+|++++|+..|.+++.++|++..+++.+|.++.
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~  104 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANE  104 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .+|++++|+..|+ ++.++|+...
T Consensus       105 ~~g~~~~A~~~~~-~~~~~~~~~~  127 (537)
T 3fp2_A          105 SLGNFTDAMFDLS-VLSLNGDFDG  127 (537)
T ss_dssp             HHTCHHHHHHHHH-HHC-------
T ss_pred             HcCCHHHHHHHHH-HHhcCCCCCh
Confidence            9999999999996 8888887654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.17  E-value=2.6e-10  Score=108.50  Aligned_cols=96  Identities=17%  Similarity=0.156  Sum_probs=89.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..+.+.|.+++..|+|++|+.+|+++|.++|+++.+++++|.+|..+|++++|+.+|++++.++|++..+++.+|.++.
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~  275 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  275 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHH-HHHHHHH
Q 017264           82 KLEEYETAK-VALEKGA   97 (374)
Q Consensus        82 ~lg~~~eA~-~~~~~a~   97 (374)
                      .+|++++|. ..|.+++
T Consensus       276 ~~~~~~~a~~~~~~~~~  292 (336)
T 1p5q_A          276 RIRRQLAREKKLYANMF  292 (336)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            999999984 4565544

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.16  E-value=5.1e-10  Score=104.27  Aligned_cols=116  Identities=9%  Similarity=0.008  Sum_probs=99.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHH--HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRA--QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra--~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..+...|..+...|++++|+..|.+++..+|++.......+  .++...|++++|+..|++++...|.++.+++.+|.++
T Consensus       131 ~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~  210 (291)
T 3mkr_A          131 ECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            45678899999999999999999999999999865444433  3333458999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      ..+|++++|..+|++++.++|+++.+...+..+...++
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g  248 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLG  248 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            99999999999999999999999998887776655443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.16  E-value=4.3e-10  Score=103.84  Aligned_cols=106  Identities=11%  Similarity=0.026  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .++..|..++..|+|++|+..|.+++..+|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++..+
T Consensus        23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence            46889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      |++++|+.+|++++.++|.+......
T Consensus       103 ~~~~~A~~~~~~~~~~~~~~~~~~~~  128 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQYEQLGSV  128 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTTTC---
T ss_pred             CCHHHHHHHHHHHHHhCCccHHHHHH
Confidence            99999999999999999987754433

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.15  E-value=5.8e-10  Score=92.80  Aligned_cols=96  Identities=18%  Similarity=0.232  Sum_probs=87.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH--HHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK--ATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~l--g~~~   80 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.++.+++.+|.+|..+|++++|+..+.+++.++|.+..++..+  +..+
T Consensus        48 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~  127 (166)
T 1a17_A           48 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  127 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999888554  4458


Q ss_pred             HHhcCHHHHHHHHHHHHh
Q 017264           81 MKLEEYETAKVALEKGAS   98 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~   98 (374)
                      ...|++++|+.++.++..
T Consensus       128 ~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A          128 VKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccchHH
Confidence            899999999999987654

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.13  E-value=4e-10  Score=111.92  Aligned_cols=116  Identities=15%  Similarity=0.186  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|+|++|+.+|.+++..+|.++.++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+++.+
T Consensus       278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  357 (537)
T 3fp2_A          278 SYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQ  357 (537)
T ss_dssp             HHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            45567777777777888888888888878877888888888888888888888888888888887777888888888888


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |++++|+.+|++++.++|++..+...++.+...++.
T Consensus       358 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  393 (537)
T 3fp2_A          358 GKFTESEAFFNETKLKFPTLPEVPTFFAEILTDRGD  393 (537)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTC
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Confidence            888888888888888888777777776666554443

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.13  E-value=3.2e-10  Score=105.29  Aligned_cols=104  Identities=15%  Similarity=0.003  Sum_probs=91.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHc-cCHHHHHHHHHHHHHhCCCC-----
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKL-QNFTEAVADANRAIELEPSM-----   69 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l-~~~~~Al~~~~~al~l~p~~-----   69 (374)
                      +..+.+.|..+...|+|++|+.+|.+||.+.+..      +.++.++|.+|..+ |++++|+.+|++|+.+.|..     
T Consensus        77 a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~  156 (292)
T 1qqe_A           77 GNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVAL  156 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHH
Confidence            3467789999999999999999999999987643      56889999999995 99999999999999998754     


Q ss_pred             -HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           70 -SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        70 -~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                       ..++.++|.++..+|+|++|+.+|++++.+.|++..
T Consensus       157 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~  193 (292)
T 1qqe_A          157 SNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRL  193 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTT
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCc
Confidence             567899999999999999999999999999987754

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=99.13  E-value=4.6e-10  Score=87.10  Aligned_cols=74  Identities=19%  Similarity=0.232  Sum_probs=67.8

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      .+|+++.+++.+|.+|+.+|++++|+..|++++.++|+++.+|+.+|.+|..+|++++|+.+|++++++.|...
T Consensus         2 ~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~   75 (100)
T 3ma5_A            2 EDPEDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEG   75 (100)
T ss_dssp             ---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHS
T ss_pred             CCccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCC
Confidence            47899999999999999999999999999999999999999999999999999999999999999999876543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.12  E-value=2.2e-10  Score=103.48  Aligned_cols=109  Identities=14%  Similarity=0.024  Sum_probs=99.4

Q ss_pred             HHhccCHHHHHHHHHHHHHhC----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264           12 AFIDDYFELAYDLYSQAIEIS----PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus        12 ~~~~~~y~~Al~~y~~aL~~~----p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      +...++|++|+..|.+++...    |.++.+++.+|.+|..+|++++|+..|.+++.++|.+..+++.+|.+++.+|+++
T Consensus        15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHH
T ss_pred             cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHH
Confidence            345689999999999999983    4567899999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           88 TAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        88 eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|+.+|++++.++|.+..+...++.+...++..
T Consensus        95 ~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~  127 (275)
T 1xnf_A           95 AAYEAFDSVLELDPTYNYAHLNRGIALYYGGRD  127 (275)
T ss_dssp             HHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHhcCccccHHHHHHHHHHHHhccH
Confidence            999999999999999998888888887665544

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.12  E-value=7.9e-10  Score=112.15  Aligned_cols=103  Identities=14%  Similarity=0.070  Sum_probs=98.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+.+|.+++..+|++..+++++|.+|..+|++++|+..++++++++|++..+++.+|.++..
T Consensus        58 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  137 (568)
T 2vsy_A           58 EAVARLGRVRWTQQRHAEAAVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRR  137 (568)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46788999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             h---cCHHHHHHHHHHHHhcCCCChh
Q 017264           83 L---EEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        83 l---g~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +   |++++|+..|+++++.+|.+..
T Consensus       138 ~~~~g~~~~A~~~~~~al~~~p~~~~  163 (568)
T 2vsy_A          138 LCDWRALDVLSAQVRAAVAQGVGAVE  163 (568)
T ss_dssp             TTCCTTHHHHHHHHHHHHHHTCCCSC
T ss_pred             hhccccHHHHHHHHHHHHhcCCcccC
Confidence            9   9999999999999999988643

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.11  E-value=2.8e-10  Score=105.65  Aligned_cols=103  Identities=17%  Similarity=0.068  Sum_probs=88.4

Q ss_pred             HHHHHHHHHHHhc-cCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH----
Q 017264            3 TDLEKKAKEAFID-DYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSK----   71 (374)
Q Consensus         3 ~~l~~~g~~~~~~-~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~----   71 (374)
                      ..+.+.|..+... |+|++|+.+|.+||.+.|.+      ..++.++|.+|.++|+|++|+..|++++.+.|.+..    
T Consensus       118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  197 (292)
T 1qqe_A          118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS  197 (292)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence            4577899999996 99999999999999997754      567899999999999999999999999999987543    


Q ss_pred             ---HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           72 ---AYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        72 ---a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                         +++++|.++..+|++++|+.+|++++.++|+...
T Consensus       198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~  234 (292)
T 1qqe_A          198 LKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFAD  234 (292)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCC
Confidence               6899999999999999999999999999998664

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.11  E-value=1.7e-09  Score=105.89  Aligned_cols=118  Identities=16%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI---------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE-------   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~---------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------   66 (374)
                      ..+...|..++..|+|++|++.|.+|+++         +|.....|.++|.+|..+|++++|+.++++++.+.       
T Consensus        52 ~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~  131 (472)
T 4g1t_A           52 TMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPY  131 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSS
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccccc
Confidence            34567899999999999999999999987         67778899999999999999999999999999874       


Q ss_pred             -CCCHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 -PSMSKAYWRKATACMKL--EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 -p~~~~a~~~lg~~~~~l--g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                       +..+.++..+|.++...  ++|++|+.+|+++++++|+++.+...+..+...+...
T Consensus       132 ~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~  188 (472)
T 4g1t_A          132 RIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNW  188 (472)
T ss_dssp             CCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHS
T ss_pred             chhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCc
Confidence             35678899999887665  5799999999999999999999888888877666554

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=99.10  E-value=9.6e-10  Score=85.38  Aligned_cols=86  Identities=21%  Similarity=0.242  Sum_probs=78.3

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hhHHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTN  108 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~------~~~~~  108 (374)
                      ++..++.+|.++..+|+|++|+..|.+++.++|.++.+++++|.+++.+|+|++|+.+|++++.++|++      ..+..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~   82 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY   82 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence            367889999999999999999999999999999999999999999999999999999999999999998      66667


Q ss_pred             HHHHHHHHHHhh
Q 017264          109 LIKECEERIAEE  120 (374)
Q Consensus       109 ~~~~~~~~l~~~  120 (374)
                      .++.+...++..
T Consensus        83 ~~~~~~~~~~~~   94 (111)
T 2l6j_A           83 RLELAQGAVGSV   94 (111)
T ss_dssp             HHHHHHHHHHCC
T ss_pred             HHHHHHHHHHhH
Confidence            777777777644

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.09  E-value=3.7e-10  Score=91.76  Aligned_cols=77  Identities=25%  Similarity=0.261  Sum_probs=69.2

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      +.++.++|.+|++.|+|++|+..|.+|+.++|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++......+.+
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~   84 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAK   84 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999877643333333

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.09  E-value=3.6e-10  Score=101.82  Aligned_cols=117  Identities=21%  Similarity=0.223  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~   66 (374)
                      ..+...|..++..|+|++|+.+|.+++..        .|....++..+|.+|..+|++++|+..+.+++.+        +
T Consensus        44 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  123 (283)
T 3edt_B           44 TMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFH  123 (283)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCC
Confidence            45788999999999999999999999988        3556789999999999999999999999999998        4


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l--------~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |....+++.+|.+++.+|++++|+.+|++++.+        .|....+...++.+...+++
T Consensus       124 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  184 (283)
T 3edt_B          124 PDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGK  184 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence            677889999999999999999999999999998        55445566666666655444

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.09  E-value=5.7e-10  Score=89.50  Aligned_cols=87  Identities=18%  Similarity=0.135  Sum_probs=80.3

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        34 ~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..+..+..+|.++++.|+|++|+..|.+++.++|.++.+++.+|.+++.+|+|++|+.+|+++++++|++......++.+
T Consensus         2 ~~a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~   81 (126)
T 3upv_A            2 MKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATA   81 (126)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence            34678999999999999999999999999999999999999999999999999999999999999999999888888888


Q ss_pred             HHHHHhh
Q 017264          114 EERIAEE  120 (374)
Q Consensus       114 ~~~l~~~  120 (374)
                      ...++..
T Consensus        82 ~~~~~~~   88 (126)
T 3upv_A           82 QIAVKEY   88 (126)
T ss_dssp             HHHTTCH
T ss_pred             HHHHhCH
Confidence            7765544

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=99.08  E-value=1e-09  Score=82.15  Aligned_cols=83  Identities=24%  Similarity=0.396  Sum_probs=77.4

Q ss_pred             CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           34 NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        34 ~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .++.+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.+++.+|++++|+.+|+++++++|++......++.+
T Consensus         7 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~   86 (91)
T 1na3_A            7 NSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNA   86 (91)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999888888777


Q ss_pred             HHH
Q 017264          114 EER  116 (374)
Q Consensus       114 ~~~  116 (374)
                      ...
T Consensus        87 ~~~   89 (91)
T 1na3_A           87 KQK   89 (91)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            654

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.06  E-value=2.2e-09  Score=108.26  Aligned_cols=114  Identities=15%  Similarity=0.117  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCC-HHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL------EPSM-SKAYWRK   76 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l------~p~~-~~a~~~l   76 (374)
                      .+...|..+...|++++|+.+|.+++...|.++.++..+|.+|.+.|++++|+..|++++.+      +|.. ..+|..+
T Consensus       443 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l  522 (597)
T 2xpi_A          443 PYLFLGMQHMQLGNILLANEYLQSSYALFQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL  522 (597)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence            34556666667777777777777777777777776777777777777777777777776666      4443 5666667


Q ss_pred             HHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           77 ATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        77 g~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      |.+|...|++++|+..|+++++++|++......+..+....
T Consensus       523 ~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~  563 (597)
T 2xpi_A          523 GHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHK  563 (597)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Confidence            77777777777777777777766666666665555555443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=99.04  E-value=2e-09  Score=90.06  Aligned_cols=105  Identities=10%  Similarity=0.076  Sum_probs=96.2

Q ss_pred             cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcCHHHHH
Q 017264           16 DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ---NFTEAVADANRAIELE-P-SMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        16 ~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~---~~~~Al~~~~~al~l~-p-~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      .....+.+.|.+.+..++.+..+.+++|.|+.+.+   ++.+++..++.+++.+ | +..+++|.+|++++++|+|++|+
T Consensus        12 ~~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           12 EDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence            34567888899999989999999999999999988   7779999999999998 7 67899999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           91 VALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+++++++.+|+|.........+++++.+.
T Consensus        92 ~y~~~lL~ieP~n~QA~~Lk~~ie~~~~kd  121 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQAKELERLIDKAMKKD  121 (152)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999998888774

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=99.03  E-value=2.9e-09  Score=85.63  Aligned_cols=83  Identities=18%  Similarity=0.160  Sum_probs=78.0

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .++.+|.++.+.|++++|+..|++++.++|++..+|+.+|.++..+|++++|+.+|+++++++|++......++.+...+
T Consensus        19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            46789999999999999999999999999999999999999999999999999999999999999999888888888777


Q ss_pred             Hhh
Q 017264          118 AEE  120 (374)
Q Consensus       118 ~~~  120 (374)
                      +..
T Consensus        99 g~~  101 (121)
T 1hxi_A           99 HNA  101 (121)
T ss_dssp             HHH
T ss_pred             CCH
Confidence            665

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=99.02  E-value=4.5e-09  Score=106.00  Aligned_cols=115  Identities=13%  Similarity=0.027  Sum_probs=95.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...|..++..|++++|+.+|.+++..+|.+..++..++.+|.+.|++++|+..|++++.+.|.+..+++.+|.+|...
T Consensus       375 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  454 (597)
T 2xpi_A          375 TWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQL  454 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHc
Confidence            45667888888888888888888888888888888888888888888888888888888888888888888888888888


Q ss_pred             cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      |++++|+..|++++++.|.+......+..+..+.+
T Consensus       455 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  489 (597)
T 2xpi_A          455 GNILLANEYLQSSYALFQYDPLLLNELGVVAFNKS  489 (597)
T ss_dssp             TCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTT
T ss_pred             CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Confidence            88888888888888888888877666666554433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=99.01  E-value=1.7e-09  Score=91.10  Aligned_cols=88  Identities=14%  Similarity=0.154  Sum_probs=80.5

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        32 ~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      ++.++..++.+|.+|+..|+|++|+..|.+++.++|.+..+|+.+|.+|+.+|+|++|+.+|+++++++|++..+...++
T Consensus         7 ~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg   86 (164)
T 3sz7_A            7 PTPESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLG   86 (164)
T ss_dssp             CCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             hhhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            34557889999999999999999999999999999999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHh
Q 017264          112 ECEERIAE  119 (374)
Q Consensus       112 ~~~~~l~~  119 (374)
                      .+...+++
T Consensus        87 ~~~~~~g~   94 (164)
T 3sz7_A           87 LARFDMAD   94 (164)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHccC
Confidence            77765443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.01  E-value=1.8e-09  Score=103.70  Aligned_cols=117  Identities=10%  Similarity=0.147  Sum_probs=102.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA----ELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSKA   72 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~----~~~~~ra~~~~~l~~~~~Al~~~~~al~l------~p~~~~a   72 (374)
                      ..+...|..++..|+|++|+.+|.+++...|.+.    .++..+|.+|..+|++++|+..+++++.+      .+....+
T Consensus        49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  128 (411)
T 4a1s_A           49 LELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS  128 (411)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence            4577899999999999999999999999999986    58999999999999999999999999998      5677889


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc------CCCChhHHHHHHHHHHHHHh
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASL------APGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l------~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++.+|.+|+.+|++++|+.+|++++.+      .+....+...++.+...++.
T Consensus       129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  181 (411)
T 4a1s_A          129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGK  181 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999999988      33334455666666666655

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.01  E-value=2.3e-09  Score=105.49  Aligned_cols=112  Identities=22%  Similarity=0.185  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH------HHHHHHHHHHH---ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE------LFADRAQASIK---LQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~------~~~~ra~~~~~---l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      .+...|..++..|++++|+..|.+++...|.+..      ++..+|.+|..   +|++++|+..+++++.++|++..+++
T Consensus       374 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  453 (514)
T 2gw1_A          374 VPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKI  453 (514)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHH
Confidence            4566777788888888888888888887776643      77788888888   78888888888888888888888888


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+|.++..+|++++|+..|+++++++|++......+..+..
T Consensus       454 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  494 (514)
T 2gw1_A          454 GLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITFAEA  494 (514)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHHHHH
Confidence            88888888888888888888888888877776665544443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=99.00  E-value=3.6e-09  Score=85.48  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=82.3

Q ss_pred             HhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           30 EISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        30 ~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      ..++.++..++.+|.+++..|+|++|+..|.+++.++|.++.+++.+|.+++.+|++++|+.+|+++++++|++......
T Consensus         3 ~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~   82 (137)
T 3q49_B            3 HMKSPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFF   82 (137)
T ss_dssp             ---CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             CCccccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHH
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999988888


Q ss_pred             HHHHHHHHHhh
Q 017264          110 IKECEERIAEE  120 (374)
Q Consensus       110 ~~~~~~~l~~~  120 (374)
                      ++.+...++..
T Consensus        83 l~~~~~~~~~~   93 (137)
T 3q49_B           83 LGQCQLEMESY   93 (137)
T ss_dssp             HHHHHHHTTCH
T ss_pred             HHHHHHHHhhH
Confidence            88877665443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=99.00  E-value=1.5e-09  Score=107.66  Aligned_cols=90  Identities=14%  Similarity=0.155  Sum_probs=82.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+.++|.+++..++|++|+.+|+++|.++|+++.+|++||.+|..+++|++|+.+|.+|++++|++..++..++.++..
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~  397 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKK  397 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHH
Q 017264           83 LEEYETAKVA   92 (374)
Q Consensus        83 lg~~~eA~~~   92 (374)
                      ++++.+|...
T Consensus       398 ~~~~~~a~~~  407 (457)
T 1kt0_A          398 AKEHNERDRR  407 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9999988754

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=99.00  E-value=2.2e-09  Score=93.28  Aligned_cols=95  Identities=16%  Similarity=0.068  Sum_probs=83.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+.+.|..++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..|.+++.++|++..++..++.++..
T Consensus        89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~  168 (198)
T 2fbn_A           89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK  168 (198)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHH-HHHHHHH
Q 017264           83 LEEYETAK-VALEKGA   97 (374)
Q Consensus        83 lg~~~eA~-~~~~~a~   97 (374)
                      ++++.++. ..|...+
T Consensus       169 ~~~~~~~~~~~~~~~f  184 (198)
T 2fbn_A          169 LKEARKKDKLTFGGMF  184 (198)
T ss_dssp             HHHHHC----------
T ss_pred             HHHHHHHHHHHHHHHh
Confidence            99988877 4444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.00  E-value=4.5e-09  Score=83.09  Aligned_cols=84  Identities=24%  Similarity=0.173  Sum_probs=80.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        47 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  126 (131)
T 2vyi_A           47 VYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELK  126 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCH
Q 017264           83 LEEY   86 (374)
Q Consensus        83 lg~~   86 (374)
                      +|++
T Consensus       127 ~~~~  130 (131)
T 2vyi_A          127 LREA  130 (131)
T ss_dssp             HTTC
T ss_pred             HhcC
Confidence            9875

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.99  E-value=3.4e-09  Score=98.87  Aligned_cols=112  Identities=10%  Similarity=-0.011  Sum_probs=86.7

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAE-LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~-~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      .+...|..+...|++++|+..|+++|...|.++. ++..+|.++.++|++++|+..|.+|++++|....+|+.++.+.+.
T Consensus       101 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~a~~~~~  180 (308)
T 2ond_A          101 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  180 (308)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            4567778888888888888888888888888776 788888888888888888888888888888777777766666443


Q ss_pred             -hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           83 -LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        83 -lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                       +|++++|+.+|+++++++|++..+...+..+..
T Consensus       181 ~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~  214 (308)
T 2ond_A          181 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             TSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence             688888888888888888887766655555543

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.98  E-value=3.6e-09  Score=97.19  Aligned_cols=117  Identities=9%  Similarity=0.148  Sum_probs=100.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHh------CCCCHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIEL------EPSMSKA   72 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l------~p~~~~a   72 (374)
                      ..++..|..++..|+|++|+.+|.+++...|.+    ..++..+|.+|..+|++++|+..+.+++.+      .+....+
T Consensus         6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~   85 (338)
T 3ro2_A            6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA   85 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence            467889999999999999999999999999998    478889999999999999999999999987      3456789


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh------HHHHHHHHHHHHHh
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLAPGDSR------FTNLIKECEERIAE  119 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~------~~~~~~~~~~~l~~  119 (374)
                      ++.+|.+++.+|++++|+.+|++++.+.+....      +...++.+...++.
T Consensus        86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~  138 (338)
T 3ro2_A           86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  138 (338)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCc
Confidence            999999999999999999999999988664432      44455555555555

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.98  E-value=2.2e-09  Score=90.10  Aligned_cols=85  Identities=13%  Similarity=0.049  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMS-KAYWRKATACM   81 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~-~a~~~lg~~~~   81 (374)
                      ..+.+.|.+++..|+|++|+..|+++|.++|.++.+|+.+|.+|..+|++++|+.+|.+++.++|++. .+...++.+..
T Consensus        64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~l~~~~~  143 (162)
T 3rkv_A           64 PLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAASVVAREMKIVTE  143 (162)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999998 66767777766


Q ss_pred             HhcCHH
Q 017264           82 KLEEYE   87 (374)
Q Consensus        82 ~lg~~~   87 (374)
                      .++++.
T Consensus       144 ~~~~~~  149 (162)
T 3rkv_A          144 RRAEKK  149 (162)
T ss_dssp             HHHHHT
T ss_pred             HHHHHH
Confidence            655543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.98  E-value=4e-09  Score=84.06  Aligned_cols=83  Identities=18%  Similarity=0.159  Sum_probs=79.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..+.+++.++|.+..+++.++.++..
T Consensus        51 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~  130 (133)
T 2lni_A           51 KLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA  130 (133)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            45788999999999999999999999999999999999999999999999999999999999999999999999999988


Q ss_pred             hcC
Q 017264           83 LEE   85 (374)
Q Consensus        83 lg~   85 (374)
                      +|+
T Consensus       131 ~~~  133 (133)
T 2lni_A          131 QYN  133 (133)
T ss_dssp             HTC
T ss_pred             hcC
Confidence            774

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.98  E-value=4.7e-10  Score=106.84  Aligned_cols=102  Identities=11%  Similarity=0.001  Sum_probs=59.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-MK   82 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~-~~   82 (374)
                      .+.+.|.+++..|+|++|+.+|+++|.++|++..+|+++|.+|..+|+|++|+.+|++++.++|++..++..++.+. ..
T Consensus       232 ~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~  311 (338)
T 2if4_A          232 CHLNIAACLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQE  311 (338)
T ss_dssp             HHHHHHHHHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHH
Confidence            56789999999999999999999999999999999999999999999999999999999999999999999999884 55


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChh
Q 017264           83 LEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .+.++.+...|.+++...|.+..
T Consensus       312 ~~~~~~a~~~~~~~l~~~p~~~~  334 (338)
T 2if4_A          312 KALYQKQKEMYKGIFKGKDEGGA  334 (338)
T ss_dssp             -----------------------
T ss_pred             HHHHHHHHHHHHHhhCCCCCCCC
Confidence            67788889999999999987763

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.98  E-value=7.3e-10  Score=110.61  Aligned_cols=102  Identities=17%  Similarity=0.225  Sum_probs=90.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH--
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA--   79 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~--   79 (374)
                      +..+...|..++..|+|++|+..|.+|++++|.++.+++++|.+|..+|++++|+..|+++++++|++..++..++.+  
T Consensus        40 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~  119 (477)
T 1wao_1           40 AIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNK  119 (477)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999999999999999999999999999999999999998  


Q ss_pred             HHHhcCHHHHHHHHH-----------HHHhcCCCC
Q 017264           80 CMKLEEYETAKVALE-----------KGASLAPGD  103 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~-----------~a~~l~p~~  103 (374)
                      +..+|+|++|+..++           +++.++|+.
T Consensus       120 ~~~~g~~~~A~~~~~~~~~~~~~~~~~al~~~~~~  154 (477)
T 1wao_1          120 IVKQKAFERAIAGDEHKRSVVDSLDIESMTIEDEY  154 (477)
T ss_dssp             HHHHHHHCCC------CCSTTTCCTTSSCCCCTTC
T ss_pred             HHHHHHHHHHhccccccchhHhhhhhhhccccccc
Confidence            899999999999999           777776653

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=98.97  E-value=4e-09  Score=94.87  Aligned_cols=97  Identities=21%  Similarity=0.192  Sum_probs=90.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~   66 (374)
                      ..+...|..++..|+|++|+.+|.+++..        +|....++.++|.+|..+|++++|+..+.+++.+        .
T Consensus        86 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~  165 (283)
T 3edt_B           86 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDD  165 (283)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45778999999999999999999999998        4667889999999999999999999999999999        6


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      |....+++.+|.++..+|++++|+.+|++++.+
T Consensus       166 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~  198 (283)
T 3edt_B          166 PNVAKTKNNLASCYLKQGKYQDAETLYKEILTR  198 (283)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777889999999999999999999999999986

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.96  E-value=2.2e-08  Score=90.96  Aligned_cols=109  Identities=11%  Similarity=0.051  Sum_probs=96.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      +..++..|..++..+++++|+.+|.+++.  +.++.+++.+|.+|..    .+++++|+..|.+++.++  ++.+++.+|
T Consensus         6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg   81 (273)
T 1ouv_A            6 PKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   81 (273)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             hHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHH
Confidence            45678899999999999999999999998  7788999999999999    999999999999999986  789999999


Q ss_pred             HHHHH----hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           78 TACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        78 ~~~~~----lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      .+|..    .+++++|+.+|++++.++  +......++.+...
T Consensus        82 ~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~  122 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCASLGGIYHD  122 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHH
T ss_pred             HHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHHHHHHHHHc
Confidence            99999    999999999999999874  66666666665543

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.96  E-value=3e-09  Score=81.98  Aligned_cols=86  Identities=21%  Similarity=0.212  Sum_probs=80.4

Q ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC--ChhHHHH
Q 017264           32 SPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPG--DSRFTNL  109 (374)
Q Consensus        32 ~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~--~~~~~~~  109 (374)
                      +|+++.+++.+|.++...|++++|+..+.+++.++|.+..+++.+|.+++.+|++++|+.+|+++++++|.  +..+...
T Consensus         2 ~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~   81 (112)
T 2kck_A            2 VDQNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAA   81 (112)
T ss_dssp             CCSSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHH
T ss_pred             CCCcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHH
Confidence            57888899999999999999999999999999999999999999999999999999999999999999999  8888877


Q ss_pred             HHHHHHHH
Q 017264          110 IKECEERI  117 (374)
Q Consensus       110 ~~~~~~~l  117 (374)
                      ++.+...+
T Consensus        82 l~~~~~~~   89 (112)
T 2kck_A           82 KADALRYI   89 (112)
T ss_dssp             HHHHHTTC
T ss_pred             HHHHHHHH
Confidence            77776655

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.96  E-value=3.9e-09  Score=100.44  Aligned_cols=118  Identities=10%  Similarity=0.157  Sum_probs=101.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSK   71 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~------p~~~~   71 (374)
                      +..++..|..++..|+|++|+.+|++++...|.+    ..++..+|.+|..+|++++|+..+.+++.+.      +....
T Consensus         9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~   88 (406)
T 3sf4_A            9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAK   88 (406)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHH
Confidence            4567899999999999999999999999999998    4688999999999999999999999999873      44578


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh------hHHHHHHHHHHHHHh
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPGDS------RFTNLIKECEERIAE  119 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~------~~~~~~~~~~~~l~~  119 (374)
                      +++.+|.++..+|++++|+.+|++++.+.+...      .+...++.+...++.
T Consensus        89 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~  142 (406)
T 3sf4_A           89 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGK  142 (406)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999998876432      255555666555555

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.95  E-value=4e-09  Score=83.79  Aligned_cols=78  Identities=12%  Similarity=-0.037  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..+...|..++..|+|++|+..|.+++..+|+++.+++++|.||..+|++++|+..+.+++.+.|+++........+.
T Consensus        28 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ai~  105 (117)
T 3k9i_A           28 ECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVELLLKIIAETSDDETIQSYKQAIL  105 (117)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHTHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            457899999999999999999999999999999999999999999999999999999999999999987654433333

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.94  E-value=3.4e-09  Score=86.81  Aligned_cols=100  Identities=16%  Similarity=0.159  Sum_probs=87.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------   69 (374)
                      +..+...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+.+++.+.+..      
T Consensus         9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~   88 (164)
T 3ro3_A            9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence            4567889999999999999999999999985432      2588999999999999999999999999886542      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ..+++.+|.++..+|++++|+.+|++++.+..
T Consensus        89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~  120 (164)
T 3ro3_A           89 AQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ  120 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH
Confidence            67899999999999999999999999987743

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=98.94  E-value=1.2e-08  Score=95.08  Aligned_cols=104  Identities=13%  Similarity=0.101  Sum_probs=93.5

Q ss_pred             HHHHHHHHHH-------hccCH-------HHHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264            4 DLEKKAKEAF-------IDDYF-------ELAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus         4 ~l~~~g~~~~-------~~~~y-------~~Al~~y~~aL~-~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .+...|..+.       ..|++       ++|+..|.+|+. ++|.+..++..+|.++..+|++++|+..|++++.+.|.
T Consensus        52 ~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~  131 (308)
T 2ond_A           52 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  131 (308)
T ss_dssp             HHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSS
T ss_pred             HHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcccc
Confidence            4556666665       35775       999999999999 79999999999999999999999999999999999999


Q ss_pred             CHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           69 MSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        69 ~~~-a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      +.. +|+.+|.++...|++++|+..|++++++.|....+.
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~  171 (308)
T 2ond_A          132 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVY  171 (308)
T ss_dssp             CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHH
T ss_pred             CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCHHHH
Confidence            887 999999999999999999999999999999876543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.92  E-value=8e-09  Score=78.95  Aligned_cols=69  Identities=17%  Similarity=0.260  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           39 FADRAQASIKLQNFTEAVADANRAIELEPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        39 ~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~-a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      .+.+|.++...|++++|+..|++++.++|.+.. +++.+|.+|+.+|++++|+.+|+++++++|++....
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            3 QLKTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             THHHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            367899999999999999999999999999999 999999999999999999999999999999999876

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.91  E-value=4.1e-09  Score=98.48  Aligned_cols=100  Identities=23%  Similarity=0.253  Sum_probs=83.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~   70 (374)
                      ..+.+.|..+.. |+|++|+.+|.+||.+.+..      ..++.++|.+|.++|+|++|+..|++++.+.+.+      .
T Consensus       117 ~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  195 (307)
T 2ifu_A          117 MALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCY  195 (307)
T ss_dssp             HHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHH
Confidence            456778888888 99999999999999886543      5788889999999999999999999999886543      3


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      .+++.+|.++..+|++++|+.+|++++ ++|...
T Consensus       196 ~~~~~~g~~~~~~g~~~~A~~~~~~al-~~p~~~  228 (307)
T 2ifu_A          196 KKCIAQVLVQLHRADYVAAQKCVRESY-SIPGFS  228 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHT-TSTTST
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHh-CCCCCC
Confidence            478888999999999999999999999 888654

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.91  E-value=3.8e-09  Score=101.24  Aligned_cols=114  Identities=14%  Similarity=0.146  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEPSM------   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------   69 (374)
                      ..+...|..++..|+|+.|+.+|.+|+.+.+.       ...++.++|.+|..+|++++|+..+.+|+.+.+..      
T Consensus       144 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  223 (383)
T 3ulq_A          144 EFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLM  223 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHH
Confidence            45667777777777777777777777776332       24567777777777777777777777777765432      


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----C-CCChhHHHHHHHHHHH
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASL-----A-PGDSRFTNLIKECEER  116 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l-----~-p~~~~~~~~~~~~~~~  116 (374)
                      ..+++++|.+|..+|++++|+.+|++++.+     + |....+...++.+...
T Consensus       224 ~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~  276 (383)
T 3ulq_A          224 GRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLITQIHYK  276 (383)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHH
Confidence            246777777777777777777777777773     3 4444444555554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.91  E-value=3e-09  Score=98.45  Aligned_cols=98  Identities=19%  Similarity=0.217  Sum_probs=85.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh---C----CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI---S----PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS------M   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~---~----p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~   69 (374)
                      ..+...|..++..|+|++|+.+|.+++..   .    +....+++++|.+|.++|+|++|+..+.+++.+.+.      .
T Consensus       156 ~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~  235 (293)
T 3u3w_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHH
Confidence            35788999999999999999999999963   1    222468899999999999999999999999998643      3


Q ss_pred             HHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcC
Q 017264           70 SKAYWRKATACMKLE-EYETAKVALEKGASLA  100 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~  100 (374)
                      +.+++++|.++..+| .+++|+.+|++++.+.
T Consensus       236 ~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~i~  267 (293)
T 3u3w_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHH
Confidence            789999999999999 5799999999998653

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.91  E-value=5.4e-09  Score=88.42  Aligned_cols=85  Identities=18%  Similarity=0.159  Sum_probs=75.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHH-----HHHHHHHHHHHhcCHHHHHHHHHHHHhc----
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSK-----AYWRKATACMKLEEYETAKVALEKGASL----   99 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-------~~~-----a~~~lg~~~~~lg~~~eA~~~~~~a~~l----   99 (374)
                      +..+.++|.+++++|+|++|+..|++||+++|+       +..     +|+++|.++..+|+|++|+.+|.+++++    
T Consensus        11 a~~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~   90 (159)
T 2hr2_A           11 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   90 (159)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcc
Confidence            467889999999999999999999999999999       444     9999999999999999999999999999    


Q ss_pred             ---CCCChhHH----HHHHHHHHHHHhh
Q 017264          100 ---APGDSRFT----NLIKECEERIAEE  120 (374)
Q Consensus       100 ---~p~~~~~~----~~~~~~~~~l~~~  120 (374)
                         +|++...+    ...+.+...+++.
T Consensus        91 ~e~~pd~~~A~~~~~~~rG~aL~~lgr~  118 (159)
T 2hr2_A           91 GELNQDEGKLWISAVYSRALALDGLGRG  118 (159)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccCCCchHHHHHHHHHhHHHHHHHCCCH
Confidence               99988877    7777776665554

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.91  E-value=3.8e-09  Score=96.68  Aligned_cols=117  Identities=21%  Similarity=0.257  Sum_probs=98.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh--------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI--------SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~--------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--------   66 (374)
                      ..+...|..++..|+|++|+.+|.+++..        .+....++..+|.+|..+|++++|+..+.+++.+.        
T Consensus        70 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~  149 (311)
T 3nf1_A           70 TMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDH  149 (311)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCC
Confidence            45678999999999999999999999988        35567899999999999999999999999999884        


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--------CCCChhHHHHHHHHHHHHHh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL--------APGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l--------~p~~~~~~~~~~~~~~~l~~  119 (374)
                      +....+++.+|.++..+|++++|+.+|++++.+        .|....+...++.+...+++
T Consensus       150 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~  210 (311)
T 3nf1_A          150 PDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGK  210 (311)
T ss_dssp             HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTC
T ss_pred             hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCC
Confidence            556788999999999999999999999999988        44444455556665554443

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.90  E-value=8.6e-09  Score=99.44  Aligned_cols=90  Identities=20%  Similarity=0.194  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+.+.|..++..|+|++|+.+|+++|.++|.++.+++++|.+|..+|++++|+.+|++|++++|++..++..++.++..
T Consensus       274 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~  353 (370)
T 1ihg_A          274 SCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQK  353 (370)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHH
Q 017264           83 LEEYETAKVA   92 (374)
Q Consensus        83 lg~~~eA~~~   92 (374)
                      ++++.++...
T Consensus       354 ~~~~~~a~k~  363 (370)
T 1ihg_A          354 IKAQKDKEKA  363 (370)
T ss_dssp             HHHHHHHHHC
T ss_pred             HHHHHHHHHH
Confidence            9999887653

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.89  E-value=9.4e-09  Score=79.55  Aligned_cols=83  Identities=18%  Similarity=0.185  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATA   79 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~   79 (374)
                      +..++..|..++..|+|++|+..|.++++++|+++.+++.+|.+|..+|++++|+..|++++.+.|.  +......+..+
T Consensus         7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~l~~~   86 (100)
T 3ma5_A            7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAREEGTQKDLSELQDA   86 (100)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhcCCchhHHHHHHHH
Confidence            3467899999999999999999999999999999999999999999999999999999999999764  34444445555


Q ss_pred             HHHhc
Q 017264           80 CMKLE   84 (374)
Q Consensus        80 ~~~lg   84 (374)
                      +...+
T Consensus        87 l~~~~   91 (100)
T 3ma5_A           87 KLKAE   91 (100)
T ss_dssp             HHHHH
T ss_pred             HHHcc
Confidence            44433

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.88  E-value=9.3e-09  Score=95.11  Aligned_cols=98  Identities=20%  Similarity=0.242  Sum_probs=76.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHH---HhCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAI---EISPNSA----ELFADRAQASIKLQNFTEAVADANRAIELEPS------M   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL---~~~p~~~----~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~   69 (374)
                      ..+...|..++..|+|++|+.+|.+|+   ...+.+.    .+++++|.+|..+|+|++|+..+++++.+.+.      .
T Consensus       156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~  235 (293)
T 2qfc_A          156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI  235 (293)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence            356778888888888888888888888   4455532    57888888888888888888888888877532      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHH-HHHHHHHHhcC
Q 017264           70 SKAYWRKATACMKLEEYETA-KVALEKGASLA  100 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA-~~~~~~a~~l~  100 (374)
                      +.+++++|.+|..+|++++| ..+|++++.+.
T Consensus       236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~  267 (293)
T 2qfc_A          236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFFF  267 (293)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHH
Confidence            67888888888888888888 67788877653

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=98.87  E-value=6.2e-09  Score=95.24  Aligned_cols=97  Identities=20%  Similarity=0.208  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIEL--------E   66 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~--------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l--------~   66 (374)
                      ..+...|..++..|+|++|+.+|.+++...        +....++..+|.+|..+|++++|+..+.+++.+        .
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  191 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD  191 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            456789999999999999999999999984        555788999999999999999999999999998        6


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      |....+++.+|.+|..+|++++|+.+|++++.+
T Consensus       192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  224 (311)
T 3nf1_A          192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTR  224 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            677889999999999999999999999999975

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.87  E-value=1.2e-08  Score=83.41  Aligned_cols=99  Identities=15%  Similarity=0.193  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------CCH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEP------SMS   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~   70 (374)
                      ..+...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+.+++.+.+      ...
T Consensus        50 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  129 (164)
T 3ro3_A           50 IAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEG  129 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHH
Confidence            457789999999999999999999999985443      56889999999999999999999999998743      235


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      .+++.+|.+++.+|++++|+.+|++++++..
T Consensus       130 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~  160 (164)
T 3ro3_A          130 RACWSLGNAYTALGNHDQAMHFAEKHLEISR  160 (164)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence            6889999999999999999999999987654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.87  E-value=2.6e-08  Score=92.06  Aligned_cols=113  Identities=11%  Similarity=0.018  Sum_probs=90.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHH---HhCCCC----HH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAI---ELEPSM----SK   71 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al---~l~p~~----~~   71 (374)
                      +...|..+...|+|++|+.+|.+++...+..      ..++.++|.+|..+|+|++|+..|.+|+   ...++.    ..
T Consensus       118 ~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~  197 (293)
T 2qfc_A          118 QYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVK  197 (293)
T ss_dssp             HHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHH
Confidence            3457788888999999999999999875443      5689999999999999999999999999   445553    26


Q ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHH
Q 017264           72 AYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERI  117 (374)
Q Consensus        72 a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~------~~~~~~~~~~~~~l  117 (374)
                      +++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...+
T Consensus       198 ~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~  249 (293)
T 2qfc_A          198 VRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKL  249 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHT
T ss_pred             HHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHc
Confidence            89999999999999999999999999875321      23444455554443

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.86  E-value=6.8e-09  Score=89.33  Aligned_cols=98  Identities=15%  Similarity=0.054  Sum_probs=84.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh---CC----CC
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL---EP----SM   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l---~p----~~   69 (374)
                      ..+...|..++..|+|++|+.+|.+++..      .+....++.++|.+|..+|++++|+..+.+++.+   .+    ..
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            45778999999999999999999999994      3444678999999999999999999999999988   33    23


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ..+++.+|.++..+|++++|+.+|++++.+.
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  137 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYA  137 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence            5678899999999999999999999998764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.86  E-value=3.9e-08  Score=76.90  Aligned_cols=82  Identities=23%  Similarity=0.332  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|+|++|+..|.+++...|.+..++..+|.+|..+|++++|+..+.+++.++|.+..+++.+|.++..
T Consensus        44 ~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           44 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh
Confidence            34678899999999999999999999999999999999999999999999999999999999999999999999999887


Q ss_pred             hc
Q 017264           83 LE   84 (374)
Q Consensus        83 lg   84 (374)
                      +|
T Consensus       124 ~g  125 (125)
T 1na0_A          124 QG  125 (125)
T ss_dssp             HC
T ss_pred             cc
Confidence            65

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.85  E-value=4e-08  Score=100.12  Aligned_cols=116  Identities=7%  Similarity=-0.015  Sum_probs=108.1

Q ss_pred             HHHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCH
Q 017264            3 TDLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMS   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~----------y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~   70 (374)
                      ..+..++..+...++          |++|+..|+++|..+|.+..+|..|+.++.+++  ++++|+..+.++++++|.+.
T Consensus        64 taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~  143 (567)
T 1dce_A           64 TLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNF  143 (567)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCH
T ss_pred             HHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccc
Confidence            456778888888888          999999999999999999999999999999999  77999999999999999999


Q ss_pred             HHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHH
Q 017264           71 KAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRFTNLIKECEERIA  118 (374)
Q Consensus        71 ~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~  118 (374)
                      .+|..++.++..+| .+++|++++.++++.+|.|..+......+...+.
T Consensus       144 ~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~  192 (567)
T 1dce_A          144 HCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLH  192 (567)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHS
T ss_pred             cHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhc
Confidence            99999999999999 9999999999999999999999888888866653

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.85  E-value=9.7e-08  Score=86.68  Aligned_cols=106  Identities=11%  Similarity=0.082  Sum_probs=87.6

Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         3 ~~l~~~g~~~~~----~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      ..+...|..++.    .+++++|+.+|.++++.+  ++.+++.+|.+|..    .+++++|+..|++++.++  ++.+++
T Consensus        39 ~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~  114 (273)
T 1ouv_A           39 SGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK--YAEGCA  114 (273)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHH
T ss_pred             HHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC--CccHHH
Confidence            456778888888    999999999999998875  78888999999998    899999999999998874  788899


Q ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        75 ~lg~~~~~----lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+|.+|..    .+++++|+.+|+++++++  +......++.+.
T Consensus       115 ~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~  156 (273)
T 1ouv_A          115 SLGGIYHDGKVVTRDFKKAVEYFTKACDLN--DGDGCTILGSLY  156 (273)
T ss_dssp             HHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCcccCHHHHHHHHHHHHhcC--cHHHHHHHHHHH
Confidence            99999998    999999999999998876  344444554443

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.84  E-value=5.8e-09  Score=96.49  Aligned_cols=113  Identities=10%  Similarity=0.004  Sum_probs=91.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKA   72 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------p~~~~a   72 (374)
                      ...|..++..++|++|+.+|.+++...+..      ..++.++|.+|..+|+|++|+..|.+++.+.       +....+
T Consensus       119 ~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  198 (293)
T 3u3w_A          119 YYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKV  198 (293)
T ss_dssp             HHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHH
Confidence            357888888999999999999999964332      3478999999999999999999999999532       234568


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHH
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIA  118 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~------~~~~~~~~~~~~~l~  118 (374)
                      ++++|.+|+.+|+|++|+.+|++++.+.+..      ..+...++.+...++
T Consensus       199 ~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g  250 (293)
T 3u3w_A          199 RYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLE  250 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhC
Confidence            9999999999999999999999999876443      345555666655544

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.84  E-value=4.5e-08  Score=92.00  Aligned_cols=116  Identities=9%  Similarity=-0.057  Sum_probs=102.7

Q ss_pred             HHHHHHHHHHhccCH-HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYF-ELAYDLYSQAIEISPNSAELFADRAQASIKLQ--NFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y-~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~--~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .++......++.+.| ++|+.+++++|.++|++..++..|+.++..++  ++++++..+..++.++|.+..+|..++.++
T Consensus        34 ~~~~~~~a~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL  113 (306)
T 3dra_A           34 QIMGLLLALMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLII  113 (306)
T ss_dssp             HHHHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHH
Confidence            345566666777777 68999999999999999999999999999999  999999999999999999999999999999


Q ss_pred             ----HHh---cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           81 ----MKL---EEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        81 ----~~l---g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                          ..+   +++.+++.++.++++.+|.+..+....+.+...++.
T Consensus       114 ~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~  159 (306)
T 3dra_A          114 GQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDL  159 (306)
T ss_dssp             HHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcc
Confidence                777   789999999999999999999888888877666543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=98.83  E-value=1.4e-08  Score=97.19  Aligned_cols=99  Identities=17%  Similarity=0.173  Sum_probs=89.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hC-CCCH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIE-----LE-PSMS   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~-----l~-p~~~   70 (374)
                      ..+...|..+...|+|++|+.+|.+++.+.+..      ..++.++|.+|..+|++++|+..+.+++.     .+ |...
T Consensus       185 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  264 (383)
T 3ulq_A          185 QCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLP  264 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHH
Confidence            457789999999999999999999999985433      35899999999999999999999999999     45 7788


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      .+++.+|.+++.+|++++|+.+|++++.+.+
T Consensus       265 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  295 (383)
T 3ulq_A          265 QAYFLITQIHYKLGKIDKAHEYHSKGMAYSQ  295 (383)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998753

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.81  E-value=7.1e-08  Score=74.14  Aligned_cols=74  Identities=16%  Similarity=0.031  Sum_probs=68.9

Q ss_pred             CCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           32 SPNSAELFADRAQASIKLQN---FTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        32 ~p~~~~~~~~ra~~~~~l~~---~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +|.++.++..+|.+++..++   ..+|...+.+|+.++|+++.+++.+|..++..|+|++|+.+|++++..+|.++.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~~~   78 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPNLD   78 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTTCC
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcc
Confidence            68899999999999987665   799999999999999999999999999999999999999999999999998543

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.81  E-value=6.9e-09  Score=96.90  Aligned_cols=101  Identities=11%  Similarity=0.039  Sum_probs=87.2

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~   70 (374)
                      ..+.+.|..+...|+|++|+.+|.+|+.+.+..      ..++.++|.+|.. |++++|+..|++|+.+.+..      .
T Consensus        77 ~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~  155 (307)
T 2ifu_A           77 KAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAA  155 (307)
T ss_dssp             HHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHH
Confidence            456788999999999999999999999984322      4688899999988 99999999999999987643      5


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      .+++++|.+|..+|+|++|+.+|++++.+.+.+.
T Consensus       156 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~  189 (307)
T 2ifu_A          156 ELIGKASRLLVRQQKFDEAAASLQKEKSMYKEME  189 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcC
Confidence            7899999999999999999999999999876543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=98.81  E-value=4.3e-08  Score=95.85  Aligned_cols=103  Identities=22%  Similarity=0.117  Sum_probs=89.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc-------------------cCHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL-------------------QNFTEAVADANRAI   63 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l-------------------~~~~~Al~~~~~al   63 (374)
                      ..+...|..+...|++++|+..|.++++.+|+++.++..+|.||...                   +.++.|+..+.+++
T Consensus       248 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~  327 (472)
T 4g1t_A          248 DVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKAD  327 (472)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHh
Confidence            35678899999999999999999999999999999999999888543                   34678888899999


Q ss_pred             HhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           64 ELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        64 ~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      .++|.+..+++.+|.++..+|+|++|+.+|++++.+++.+..
T Consensus       328 ~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~  369 (472)
T 4g1t_A          328 EANDNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVA  369 (472)
T ss_dssp             HHCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHH
T ss_pred             hcCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChH
Confidence            999998889999999999999999999999999998887654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.80  E-value=6.7e-08  Score=90.81  Aligned_cols=116  Identities=8%  Similarity=0.056  Sum_probs=105.4

Q ss_pred             HHHHHHHHH----Hhc---cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--HHHHHHHHHHHhCCCCHHHHH
Q 017264            4 DLEKKAKEA----FID---DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT--EAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         4 ~l~~~g~~~----~~~---~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~--~Al~~~~~al~l~p~~~~a~~   74 (374)
                      .+..++..+    ...   +++.+++..++++|..+|.+..++..|+.++.+++.++  +++..+.+++.++|.+..+|.
T Consensus       105 aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~  184 (306)
T 3dra_A          105 IWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWS  184 (306)
T ss_dssp             HHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHH
Confidence            345566666    444   78999999999999999999999999999999999998  999999999999999999999


Q ss_pred             HHHHHHHHhcC------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           75 RKATACMKLEE------YETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        75 ~lg~~~~~lg~------~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .++.++..+++      +++++.++.+++.++|+|..+...+..+...++.
T Consensus       185 ~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~  235 (306)
T 3dra_A          185 HRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDR  235 (306)
T ss_dssp             HHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccccchhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCC
Confidence            99999999998      9999999999999999999999888888766554

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.80  E-value=2e-08  Score=100.44  Aligned_cols=117  Identities=15%  Similarity=0.130  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCCC
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPSM   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~~   69 (374)
                      ..+...+..+..+|+|++|+.+|.++|.+     .+++   +..+.++|.+|..+|+|++|+..+++++.+     .+++
T Consensus       310 ~~~le~a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~H  389 (490)
T 3n71_A          310 KDTLEKIDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNN  389 (490)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTC
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCC
Confidence            34566777888999999999999999987     3444   578999999999999999999999999975     4444


Q ss_pred             ---HHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCCChhHH---HHHHHHHHHHHh
Q 017264           70 ---SKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFT---NLIKECEERIAE  119 (374)
Q Consensus        70 ---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~-----l~p~~~~~~---~~~~~~~~~l~~  119 (374)
                         +..+.++|.+|..+|+|++|...|++++.     +.|+++...   ..+..++..++.
T Consensus       390 p~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~  450 (490)
T 3n71_A          390 AQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRM  450 (490)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHH
Confidence               56889999999999999999999999986     467877544   445555544443

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.80  E-value=3.8e-08  Score=94.22  Aligned_cols=101  Identities=15%  Similarity=0.020  Sum_probs=90.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHccCHHHHHHHHHHHHH-----hCCCCH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP------NSAELFADRAQASIKLQNFTEAVADANRAIE-----LEPSMS   70 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p------~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~-----l~p~~~   70 (374)
                      +..+...|..++..|+|++|+.+|.+++.+.+      ....++.++|.+|..+|++++|+..+.+++.     .+|...
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~  261 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLP  261 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHH
Confidence            34567899999999999999999999999732      1246889999999999999999999999999     677778


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .+++.+|.+++.+|++++|+.+|++++.+.+.
T Consensus       262 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  293 (378)
T 3q15_A          262 KVLFGLSWTLCKAGQTQKAFQFIEEGLDHITA  293 (378)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999998654

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.79  E-value=1.9e-08  Score=84.86  Aligned_cols=70  Identities=20%  Similarity=0.205  Sum_probs=63.9

Q ss_pred             hHHHHHHHHHHHhccCH----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYF----------ELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y----------~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-----------~~~~Al~~~~   60 (374)
                      ++.+++.|.++...+++          ++|+..|++||+++|++..+|+++|.+|..+|           ++++|+.+|+
T Consensus        36 aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~  115 (158)
T 1zu2_A           36 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  115 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHH
Confidence            45778899999988775          59999999999999999999999999999885           8999999999


Q ss_pred             HHHHhCCCCHH
Q 017264           61 RAIELEPSMSK   71 (374)
Q Consensus        61 ~al~l~p~~~~   71 (374)
                      +|+.++|++..
T Consensus       116 kAl~l~P~~~~  126 (158)
T 1zu2_A          116 QAVDEQPDNTH  126 (158)
T ss_dssp             HHHHHCTTCHH
T ss_pred             HHHHhCCCCHH
Confidence            99999999853

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.79  E-value=2.9e-08  Score=91.87  Aligned_cols=102  Identities=18%  Similarity=0.012  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-CHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELE--PS-MSKAYWRKAT   78 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~-~~~a~~~lg~   78 (374)
                      ..+..|..+++.++|++|+.+|+.++......  ..+++++|.++..+|++++|+..|++++...  |. ...+++++|.
T Consensus       137 ~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~gl  216 (282)
T 4f3v_A          137 VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAM  216 (282)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHH
Confidence            35677888888888888888888776642111  3578889999999999999999999888543  44 5678899999


Q ss_pred             HHHHhcCHHHHHHHHHHHHhcCCCChhH
Q 017264           79 ACMKLEEYETAKVALEKGASLAPGDSRF  106 (374)
Q Consensus        79 ~~~~lg~~~eA~~~~~~a~~l~p~~~~~  106 (374)
                      ++..+|+.++|...|++++..+|+ ..+
T Consensus       217 aL~~lGr~deA~~~l~~a~a~~P~-~~~  243 (282)
T 4f3v_A          217 ARRSQGNESAAVALLEWLQTTHPE-PKV  243 (282)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHSCC-HHH
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCc-HHH
Confidence            999999999999999999999987 543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.79  E-value=2.9e-08  Score=91.89  Aligned_cols=90  Identities=10%  Similarity=-0.018  Sum_probs=79.2

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEY   86 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~--~~a~~~lg~~~~~lg~~   86 (374)
                      +..+...++++.|+..|.+++..+|++..+++++|.+|..+|++++|+..|.++++++|++  ..++.++|.++..+|+.
T Consensus       192 ~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          192 QIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            3344455555556677777888999999999999999999999999999999999999998  89999999999999999


Q ss_pred             HHHHHHHHHHHh
Q 017264           87 ETAKVALEKGAS   98 (374)
Q Consensus        87 ~eA~~~~~~a~~   98 (374)
                      ++|...|++++.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999998864

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.78  E-value=6.3e-08  Score=74.97  Aligned_cols=86  Identities=17%  Similarity=0.183  Sum_probs=78.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      .+..++.+|.++...|++++|+..+.+++.++|.+..+++.+|.+++.+|++++|+.+|++++.++|.+..+...++.+.
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            35778999999999999999999999999999999999999999999999999999999999999999998888888777


Q ss_pred             HHHHhh
Q 017264          115 ERIAEE  120 (374)
Q Consensus       115 ~~l~~~  120 (374)
                      ..++..
T Consensus        83 ~~~~~~   88 (118)
T 1elw_A           83 EFLNRF   88 (118)
T ss_dssp             HHTTCH
T ss_pred             HHHhhH
Confidence            655443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=98.78  E-value=2e-08  Score=96.23  Aligned_cols=96  Identities=19%  Similarity=0.211  Sum_probs=48.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKA   72 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~~~a   72 (374)
                      +...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+++++.+.+.      ...+
T Consensus       266 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~  345 (411)
T 4a1s_A          266 NSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARA  345 (411)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHH
Confidence            3445555555555555555555555543322      344555555555555555555555555544321      1334


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ++.+|.+|..+|++++|+.+|++++++.
T Consensus       346 ~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          346 CWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence            5555555555555555555555555444

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=98.78  E-value=2.3e-08  Score=95.05  Aligned_cols=118  Identities=13%  Similarity=0.143  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~   70 (374)
                      ..+...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+.+++.+.+..      .
T Consensus       228 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~  307 (406)
T 3sf4_A          228 RAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEG  307 (406)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHH
Confidence            356788899999999999999999999886655      6788889999999999999999999999886543      6


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC------hhHHHHHHHHHHHHHhh
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPGD------SRFTNLIKECEERIAEE  120 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~------~~~~~~~~~~~~~l~~~  120 (374)
                      .+++.+|.+|..+|++++|+.+|++++++.+..      ......++.+...++..
T Consensus       308 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          308 RACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            688899999999999999999999988874332      23444555555555543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.78  E-value=1.9e-08  Score=85.75  Aligned_cols=82  Identities=10%  Similarity=-0.023  Sum_probs=74.5

Q ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHhcCHHHHHHHHH
Q 017264           17 YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM--SKAYWRKATACMKLEEYETAKVALE   94 (374)
Q Consensus        17 ~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~--~~a~~~lg~~~~~lg~~~eA~~~~~   94 (374)
                      ....|+..|.+++..+|+++.+++.+|.+|..+|++++|+..|.+++.++|..  ..+++.+|.++..+|++++|+.+|+
T Consensus        89 ~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~  168 (176)
T 2r5s_A           89 AESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYR  168 (176)
T ss_dssp             TSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHH
T ss_pred             ccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHH
Confidence            33456788888889999999999999999999999999999999999999976  6699999999999999999999999


Q ss_pred             HHHh
Q 017264           95 KGAS   98 (374)
Q Consensus        95 ~a~~   98 (374)
                      +++.
T Consensus       169 ~al~  172 (176)
T 2r5s_A          169 RQLY  172 (176)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            8863

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.78  E-value=4.7e-08  Score=99.61  Aligned_cols=113  Identities=9%  Similarity=-0.039  Sum_probs=104.8

Q ss_pred             HHHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~--~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      ..+..++-.+...+  +|++|+..|+++|+.+|.+..+|..|+.++.+++ .++++++++.++|+++|.+..+|+.+|.+
T Consensus       108 ~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~l  187 (567)
T 1dce_A          108 GTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCL  187 (567)
T ss_dssp             HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHH
Confidence            35678888899999  7799999999999999999999999999999999 99999999999999999999999999999


Q ss_pred             HHHh--------------cCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           80 CMKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        80 ~~~l--------------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      +..+              +.+++|++++.+++.++|++..+...++.+..
T Consensus       188 l~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~  237 (567)
T 1dce_A          188 LPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLG  237 (567)
T ss_dssp             HHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHS
T ss_pred             HHhhcccccccccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHh
Confidence            9986              67899999999999999999998888877743

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.77  E-value=4.9e-08  Score=86.13  Aligned_cols=109  Identities=15%  Similarity=0.037  Sum_probs=88.4

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----CHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ----NFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~----~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      +..++..|..++..+++++|+.+|.++++.  .++.+++++|.+|.. +    ++.+|+.+|++++.  +.++.+++++|
T Consensus        18 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~--g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg   92 (212)
T 3rjv_A           18 RRAQYYLADTWVSSGDYQKAEYWAQKAAAQ--GDGDALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLA   92 (212)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHT--TCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHH
Confidence            356788899999999999999999999875  578889999999887 6    89999999999865  46888899999


Q ss_pred             HHHHH----hcCHHHHHHHHHHHHhcCCC--ChhHHHHHHHHHH
Q 017264           78 TACMK----LEEYETAKVALEKGASLAPG--DSRFTNLIKECEE  115 (374)
Q Consensus        78 ~~~~~----lg~~~eA~~~~~~a~~l~p~--~~~~~~~~~~~~~  115 (374)
                      .+|..    .+++.+|+.+|+++.+..+.  +......+..+..
T Consensus        93 ~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~  136 (212)
T 3rjv_A           93 RVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYA  136 (212)
T ss_dssp             HHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHH
Confidence            99887    88999999999999888773  3555555555543

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=98.76  E-value=3.1e-08  Score=94.85  Aligned_cols=118  Identities=14%  Similarity=0.030  Sum_probs=92.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC------C
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-------SAELFADRAQASIKLQNFTEAVADANRAIELEP------S   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p------~   68 (374)
                      +..+...|..++..|+++.|+.+|.+|+...+.       .+.++.++|.+|..+|++++|+..+.+|+.+.+      .
T Consensus       141 a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~  220 (378)
T 3q15_A          141 AEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF  220 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence            345678888999999999999999999887432       245778899999999999999999999998743      2


Q ss_pred             CHHHHHHHHHHHHHhcCHHHHHHHHHHHHh-----cCCCChhHHHHHHHHHHHHHh
Q 017264           69 MSKAYWRKATACMKLEEYETAKVALEKGAS-----LAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        69 ~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~-----l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ...+++++|.+|..+|++++|+.+|++++.     .+|....+...++.+...+++
T Consensus       221 ~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~  276 (378)
T 3q15_A          221 IAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQ  276 (378)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCC
Confidence            356788899999999999999999999988     566655566666666655444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.76  E-value=5.8e-08  Score=78.79  Aligned_cols=90  Identities=19%  Similarity=0.249  Sum_probs=82.0

Q ss_pred             hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           31 ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM---SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        31 ~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      ..+.+...++.+|.+++..|++.+|+..|++++.++|++   ..+++.+|.+|+.+|+|++|+.+|+++++++|++..+.
T Consensus        23 ~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  102 (148)
T 2dba_A           23 PGASSVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKAL  102 (148)
T ss_dssp             TTCCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHH
Confidence            457789999999999999999999999999999999987   89999999999999999999999999999999998888


Q ss_pred             HHHHHHHHHHHhh
Q 017264          108 NLIKECEERIAEE  120 (374)
Q Consensus       108 ~~~~~~~~~l~~~  120 (374)
                      ..++.+...++..
T Consensus       103 ~~~a~~~~~~~~~  115 (148)
T 2dba_A          103 YRRSQALEKLGRL  115 (148)
T ss_dssp             HHHHHHHHHHTCH
T ss_pred             HHHHHHHHHcCCH
Confidence            8888777665443

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.75  E-value=5.7e-08  Score=85.70  Aligned_cols=108  Identities=14%  Similarity=-0.011  Sum_probs=89.1

Q ss_pred             HHHHHHHHHHHhcc----CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCC--CCHHH
Q 017264            3 TDLEKKAKEAFIDD----YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEP--SMSKA   72 (374)
Q Consensus         3 ~~l~~~g~~~~~~~----~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p--~~~~a   72 (374)
                      ..++..|..++. +    ++++|+.+|.++++  +.++.+++++|.+|..    .+++.+|+..|++++.+++  .++.+
T Consensus        51 ~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~--~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a  127 (212)
T 3rjv_A           51 DALALLAQLKIR-NPQQADYPQARQLAEKAVE--AGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDA  127 (212)
T ss_dssp             HHHHHHHHHTTS-STTSCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHH
T ss_pred             HHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHH
Confidence            456778888887 6    89999999999966  5678899999999987    7899999999999998887  45889


Q ss_pred             HHHHHHHHHH----hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           73 YWRKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        73 ~~~lg~~~~~----lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ++.+|.+|..    .+++++|+.+|+++..+ +.+......+..+.
T Consensus       128 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~~Lg~~y  172 (212)
T 3rjv_A          128 QMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEYWAGMMF  172 (212)
T ss_dssp             HHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHHHHHHHH
Confidence            9999999998    88899999999999888 55565666665554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=98.74  E-value=5e-08  Score=96.04  Aligned_cols=109  Identities=11%  Similarity=0.145  Sum_probs=89.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC--
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS--   68 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~--   68 (374)
                      .....+......|+|++|+.+|.++|.+     .|++   +..+.++|.+|..+|+|++|+..+++++.+     .++  
T Consensus       300 ~~le~~~~~~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp  379 (433)
T 3qww_A          300 NVIEEFRRAKHYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSL  379 (433)
T ss_dssp             HHHHHHHHHTTTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCH
T ss_pred             HHHHHHHHhhhccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCCh
Confidence            3444555556678999999999999996     4555   567899999999999999999999999975     344  


Q ss_pred             -CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChhHHHHHHH
Q 017264           69 -MSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTNLIKE  112 (374)
Q Consensus        69 -~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l-----~p~~~~~~~~~~~  112 (374)
                       .+..+.++|.+|..+|+|++|+..|++++.+     .|+++........
T Consensus       380 ~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l~~~  429 (433)
T 3qww_A          380 NVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEIKQE  429 (433)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHH
Confidence             4567899999999999999999999999874     6888876654443

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.74  E-value=7.6e-08  Score=75.70  Aligned_cols=82  Identities=10%  Similarity=-0.038  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS--MSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~   80 (374)
                      ..++..|..++..|+|++|+..|.+++..+|.+..+++.+|.+|..+|++++|+..|++++.+.|.  +..++..+...+
T Consensus        20 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~l~~~l   99 (115)
T 2kat_A           20 LLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAAAQSRGDQQVVKELQVFL   99 (115)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccccHHHHHHHHHHH
Confidence            457889999999999999999999999999999999999999999999999999999999999874  444445555554


Q ss_pred             HHhc
Q 017264           81 MKLE   84 (374)
Q Consensus        81 ~~lg   84 (374)
                      ..++
T Consensus       100 ~~l~  103 (115)
T 2kat_A          100 RRLA  103 (115)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            4444

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.73  E-value=1.5e-07  Score=74.91  Aligned_cols=80  Identities=14%  Similarity=0.043  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      ..++..|..++..|+|++|+..|.+++..+|++   +.+++.+|.+|..+|++++|+..+++++...|++..+...+..+
T Consensus        40 ~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~l  119 (129)
T 2xev_A           40 NALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQYGEGKNTEAQQTLQQVATQYPGSDAARVAQERL  119 (129)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTSHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence            467889999999999999999999999999999   89999999999999999999999999999999998776655554


Q ss_pred             HHH
Q 017264           80 CMK   82 (374)
Q Consensus        80 ~~~   82 (374)
                      ..-
T Consensus       120 ~~l  122 (129)
T 2xev_A          120 QSI  122 (129)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            433

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.73  E-value=7e-08  Score=89.08  Aligned_cols=87  Identities=18%  Similarity=0.255  Sum_probs=80.4

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        33 p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      |.++..+..+|.+|+..|+|++|+..|.+++.++|++..+++++|.+|+.+|+|++|+..|+++++++|++..+...++.
T Consensus         1 p~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~   80 (281)
T 2c2l_A            1 SPSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (281)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHHHHh
Q 017264          113 CEERIAE  119 (374)
Q Consensus       113 ~~~~l~~  119 (374)
                      +...+++
T Consensus        81 ~~~~~g~   87 (281)
T 2c2l_A           81 CQLEMES   87 (281)
T ss_dssp             HHHHTTC
T ss_pred             HHHHcCC
Confidence            7665443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.72  E-value=2.6e-07  Score=87.53  Aligned_cols=110  Identities=9%  Similarity=-0.031  Sum_probs=93.2

Q ss_pred             HHHHHHHHHHhcc--CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDD--YFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         4 ~l~~~g~~~~~~~--~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .+..++..+...+  +|++++..++++|..+|.|..++..|+.++..++. ++++++++.++|.++|.+..+|..++.++
T Consensus       110 aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll  189 (331)
T 3dss_A          110 TWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLL  189 (331)
T ss_dssp             HHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            4566777777777  48899999999999999999999999999988888 58999999999999999999999999988


Q ss_pred             HHh--------------cCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           81 MKL--------------EEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        81 ~~l--------------g~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ..+              +.+++++.++.+++..+|+|..+...+.-+
T Consensus       190 ~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~l  236 (331)
T 3dss_A          190 PQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWL  236 (331)
T ss_dssp             HHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            887              568899999999999999998877655433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.69  E-value=1.7e-07  Score=73.32  Aligned_cols=76  Identities=16%  Similarity=0.130  Sum_probs=44.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEIS-------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~-------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      ++..+..|..++..++|..|+..|..|++..       .....++..+|.||+++|+++.|+..+++++.++|++..++.
T Consensus         5 a~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~   84 (104)
T 2v5f_A            5 AEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (104)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHh
Confidence            3455666666666666666666666666652       123455555566666666666666655666555555555544


Q ss_pred             HHH
Q 017264           75 RKA   77 (374)
Q Consensus        75 ~lg   77 (374)
                      +++
T Consensus        85 n~~   87 (104)
T 2v5f_A           85 NLK   87 (104)
T ss_dssp             HHH
T ss_pred             hHH
Confidence            444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.69  E-value=5.8e-08  Score=83.36  Aligned_cols=117  Identities=9%  Similarity=0.107  Sum_probs=92.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh---CCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI---SPNS----AELFADRAQASIKLQNFTEAVADANRAIELEPS------M   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~---~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~   69 (374)
                      ..+...|..++..|+|++|+.+|.+++..   .+++    ..++.++|.+|..+|++++|+..+.+++.+.+.      .
T Consensus        67 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  146 (203)
T 3gw4_A           67 RALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAI  146 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHH
Confidence            45778999999999999999999999998   4422    567899999999999999999999999977432      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ..++..+|.++..+|++++|+.+|++++.+...... ..+...+...+...
T Consensus       147 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~-~~~~~~~~~~~~~~  196 (203)
T 3gw4_A          147 ACAFRGLGDLAQQEKNLLEAQQHWLRARDIFAELED-SEAVNELMTRLNGL  196 (203)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC-HHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCC-HHHHHHHHhcccch
Confidence            345789999999999999999999999987543221 23444444444443

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=98.68  E-value=2.6e-08  Score=91.45  Aligned_cols=100  Identities=16%  Similarity=0.165  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~   70 (374)
                      ..+...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+.+++.+.+..      .
T Consensus       184 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  263 (338)
T 3ro2_A          184 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA  263 (338)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHH
Confidence            356788999999999999999999999885432      3488999999999999999999999999887654      7


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .+++.+|.++..+|++++|+.+|++++.+.+.
T Consensus       264 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~  295 (338)
T 3ro2_A          264 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQE  295 (338)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHh
Confidence            78899999999999999999999999887653

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=98.68  E-value=2.1e-07  Score=75.17  Aligned_cols=109  Identities=10%  Similarity=0.042  Sum_probs=94.5

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHhcC
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTE---AVADANRAIELE-P-SMSKAYWRKATACMKLEE   85 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~---Al~~~~~al~l~-p-~~~~a~~~lg~~~~~lg~   85 (374)
                      ..........+...|.+++..++.+....+++|.|+.+..+...   ++..++..+..+ | ...+++|.+|+.++++|+
T Consensus        10 ~~~~~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~   89 (126)
T 1nzn_A           10 ELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKE   89 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTC
T ss_pred             ccCCHHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhh
Confidence            33444556778888999988888899999999999999877666   999999888877 5 577899999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |.+|+.+++.+++.+|+|..+......++.++..
T Consensus        90 Y~~A~~~~~~lL~~eP~n~QA~~Lk~~i~~~i~k  123 (126)
T 1nzn_A           90 YEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  123 (126)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHh
Confidence            9999999999999999999999888888877754

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.68  E-value=4.4e-07  Score=86.50  Aligned_cols=112  Identities=7%  Similarity=0.014  Sum_probs=100.9

Q ss_pred             HHHHHhccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh-c-
Q 017264            9 AKEAFIDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKL-E-   84 (374)
Q Consensus         9 g~~~~~~~~-y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l-g-   84 (374)
                      -...+..+. .++|+.+++++|.++|.+..++..|+.++..++ .+++++..+..++..+|.+..+|..++.++..+ + 
T Consensus        60 ~r~~~~~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~  139 (349)
T 3q7a_A           60 FRAIAAKEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQ  139 (349)
T ss_dssp             HHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCS
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCC
Confidence            334444444 478999999999999999999999999999999 599999999999999999999999999999998 8 


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ++++++.++.++++++|.|..+......+...++..
T Consensus       140 ~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~  175 (349)
T 3q7a_A          140 DPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTL  175 (349)
T ss_dssp             CCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccc
Confidence            999999999999999999999888888887777764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.67  E-value=5.9e-07  Score=85.14  Aligned_cols=114  Identities=5%  Similarity=-0.034  Sum_probs=102.3

Q ss_pred             HHHHHHHHHHhccC----------HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHH
Q 017264            4 DLEKKAKEAFIDDY----------FELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSK   71 (374)
Q Consensus         4 ~l~~~g~~~~~~~~----------y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~--~~~Al~~~~~al~l~p~~~~   71 (374)
                      .+..++..+...+.          +.+++..++.+|..+|.+..++..|+.++..++.  +++++..+.+++.++|.+..
T Consensus        66 aWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~  145 (331)
T 3dss_A           66 LWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFH  145 (331)
T ss_dssp             HHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHH
Confidence            34556666655544          7899999999999999999999999999999994  99999999999999999999


Q ss_pred             HHHHHHHHHHHhcC-HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           72 AYWRKATACMKLEE-YETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        72 a~~~lg~~~~~lg~-~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      +|..++.++..+|. +++++.++.++++.+|.|..+......+...+
T Consensus       146 AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l  192 (331)
T 3dss_A          146 CWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQL  192 (331)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHh
Confidence            99999999999999 69999999999999999999988888886655

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=98.65  E-value=2.1e-07  Score=91.59  Aligned_cols=109  Identities=17%  Similarity=0.101  Sum_probs=90.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC-
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS-   68 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~-   68 (374)
                      +.+......+..+|+|++|+.+|.++|..     .+++   ...+.++|.+|..+|+|++|+..+++++.+     .++ 
T Consensus       288 ~~ll~~ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~H  367 (429)
T 3qwp_A          288 QESLKKIEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSH  367 (429)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCC
Confidence            34566677788999999999999999986     3444   578899999999999999999999999965     344 


Q ss_pred             --CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc-----CCCChhHHHHHH
Q 017264           69 --MSKAYWRKATACMKLEEYETAKVALEKGASL-----APGDSRFTNLIK  111 (374)
Q Consensus        69 --~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l-----~p~~~~~~~~~~  111 (374)
                        .+..++++|.+|..+|+|++|+..|++++.+     .|+++.....+.
T Consensus       368 p~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~  417 (429)
T 3qwp_A          368 PVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIEDLIL  417 (429)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence              4567899999999999999999999999864     788886555433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=98.65  E-value=4.1e-07  Score=71.01  Aligned_cols=86  Identities=15%  Similarity=0.060  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELE-------PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFT  107 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~-------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~  107 (374)
                      ++.-++.+|..++..++|..|+..++.|+.+.       .....++..+|.+++.+|+++.|+..++++++++|++..+.
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~   83 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence            45678899999999999999999999999863       34678999999999999999999999999999999999988


Q ss_pred             HHHHHHHHHHHhh
Q 017264          108 NLIKECEERIAEE  120 (374)
Q Consensus       108 ~~~~~~~~~l~~~  120 (374)
                      ..+...+..+...
T Consensus        84 ~n~~~~~~~~~~~   96 (104)
T 2v5f_A           84 GNLKYFEYIMAKE   96 (104)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhc
Confidence            8887666655543

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.64  E-value=8.8e-08  Score=75.59  Aligned_cols=84  Identities=15%  Similarity=0.168  Sum_probs=73.6

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC-------hhHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGD-------SRFT  107 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~-------~~~~  107 (374)
                      .+..++.+|.++...|++++|+..+.+++.++|.+..+++.+|.+++.+|++++|+.+|++++.+.|.+       ..+.
T Consensus         3 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~   82 (131)
T 1elr_A            3 QALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAY   82 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHH
Confidence            357789999999999999999999999999999999999999999999999999999999999998876       5555


Q ss_pred             HHHHHHHHHHH
Q 017264          108 NLIKECEERIA  118 (374)
Q Consensus       108 ~~~~~~~~~l~  118 (374)
                      ..++.+...++
T Consensus        83 ~~la~~~~~~~   93 (131)
T 1elr_A           83 ARIGNSYFKEE   93 (131)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHHhc
Confidence            55565554443

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.60  E-value=3.3e-07  Score=87.41  Aligned_cols=108  Identities=7%  Similarity=-0.028  Sum_probs=58.8

Q ss_pred             HHHHHHHHhc-c-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHH--------HHHHHHHHHHHhCCCCHHHHHH
Q 017264            6 EKKAKEAFID-D-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFT--------EAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         6 ~~~g~~~~~~-~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~--------~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      ..++..+... + ++++++.+++++|..+|.|..++..|+.++.+++.++        ++++.+.+++.++|.+..+|..
T Consensus       127 ~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~  206 (349)
T 3q7a_A          127 HHRLLLLDRISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGW  206 (349)
T ss_dssp             HHHHHHHHHHCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHhcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHH
Confidence            3344444443 3 4555555555555555555555555555555555554        5555555555555555555555


Q ss_pred             HHHHHHHhcC-------HHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           76 KATACMKLEE-------YETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        76 lg~~~~~lg~-------~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      ++.++..+++       +++++.++.+++.++|+|..+...+..+
T Consensus       207 R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~n~SaW~Ylr~L  251 (349)
T 3q7a_A          207 RWYLRVSRPGAETSSRSLQDELIYILKSIHLIPHNVSAWNYLRGF  251 (349)
T ss_dssp             HHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             HHHHHHhccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            5555555554       4555555555555555555555554444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.57  E-value=9.3e-08  Score=88.47  Aligned_cols=114  Identities=11%  Similarity=0.024  Sum_probs=95.3

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-C-HHHHHHHHHHHHHh
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-M-SKAYWRKATACMKL   83 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~-~~a~~~lg~~~~~l   83 (374)
                      ...|..+...|+|++|.++|..++...|.+. +++.+|.++++.++|.+|+..|..++...+. . ..+++.+|.++..+
T Consensus       106 LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al~~L  184 (282)
T 4f3v_A          106 MGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANL  184 (282)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHHHHC
Confidence            4678889999999999999999999999888 9999999999999999999999977765322 1 45899999999999


Q ss_pred             cCHHHHHHHHHHHHhcC--CC-ChhHHHHHHHHHHHHHhh
Q 017264           84 EEYETAKVALEKGASLA--PG-DSRFTNLIKECEERIAEE  120 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~--p~-~~~~~~~~~~~~~~l~~~  120 (374)
                      |++++|+.+|+++....  |. .......++.|..+++..
T Consensus       185 G~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~  224 (282)
T 4f3v_A          185 ALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNE  224 (282)
T ss_dssp             TCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCH
T ss_pred             CCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCH
Confidence            99999999999998544  44 344666677776665554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.57  E-value=3.7e-07  Score=91.44  Aligned_cols=112  Identities=10%  Similarity=-0.021  Sum_probs=93.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-H
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC-M   81 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~-~   81 (374)
                      .+...|..+...|++++|+..|.++|...|.++ .+|..++.++.++|++++|+..|.+|++..|.....++..+.+. .
T Consensus       323 l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~~~a~~~~~  402 (530)
T 2ooe_A          323 LYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYY  402 (530)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            456778888899999999999999999999885 58999999998999999999999999998888777777776653 4


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      ..|++++|..+|+++++..|++..+...+..+..
T Consensus       403 ~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~  436 (530)
T 2ooe_A          403 CSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  436 (530)
T ss_dssp             HTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred             HcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            5899999999999999999988877666665543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.54  E-value=1.2e-06  Score=71.99  Aligned_cols=89  Identities=13%  Similarity=0.019  Sum_probs=80.0

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK-   82 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~-   82 (374)
                      .|..++..+.+++|+.+|.++++.  .++.+++++|.+|..    .+++.+|+.+|++|+..  .++.+++++|.+|.. 
T Consensus        31 lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G  106 (138)
T 1klx_A           31 LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGL--NDQDGCLILGYKQYAG  106 (138)
T ss_dssp             HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcC--CCHHHHHHHHHHHHCC
Confidence            677788888889999999999887  678999999999998    89999999999999987  678999999999999 


Q ss_pred             ---hcCHHHHHHHHHHHHhcC
Q 017264           83 ---LEEYETAKVALEKGASLA  100 (374)
Q Consensus        83 ---lg~~~eA~~~~~~a~~l~  100 (374)
                         .+++++|+.+|+++.++.
T Consensus       107 ~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A          107 KGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             SSSCCCHHHHHHHHHHHHHTT
T ss_pred             CCCCcCHHHHHHHHHHHHHCC
Confidence               899999999999998874

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=98.53  E-value=1.7e-06  Score=82.60  Aligned_cols=101  Identities=20%  Similarity=0.138  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH--------------------------------
Q 017264            3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASI--------------------------------   47 (374)
Q Consensus         3 ~~l~~~g~~~~~~~---~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~--------------------------------   47 (374)
                      -.++-+|..++..+   ++.+|+.+|.+|++++|+++.++..++.||.                                
T Consensus       197 ydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~~~~~~~  276 (372)
T 3ly7_A          197 LTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTLPELNNL  276 (372)
T ss_dssp             HHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTCGGGTTC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhcccCCcC
Confidence            35677788777654   4689999999999999999888887666652                                


Q ss_pred             ------------HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           48 ------------KLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        48 ------------~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                                  ..|++++|+..+++|+.++|+ ..+|..+|.++...|++++|++.|.+|++++|..+
T Consensus       277 a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~  344 (372)
T 3ly7_A          277 SIIYQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGAN  344 (372)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcC
Confidence                        247778888888888888764 56777788888888888888888888888888765

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=98.50  E-value=1.2e-06  Score=87.85  Aligned_cols=105  Identities=13%  Similarity=0.083  Sum_probs=93.5

Q ss_pred             HHHHHHHHHHh-------ccCHH-------HHHHHHHHHHH-hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Q 017264            4 DLEKKAKEAFI-------DDYFE-------LAYDLYSQAIE-ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS   68 (374)
Q Consensus         4 ~l~~~g~~~~~-------~~~y~-------~Al~~y~~aL~-~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~   68 (374)
                      .+...|..+..       .|+++       +|+..|.+|+. ..|.+..++..+|.++.++|++++|+..|++++.+.|.
T Consensus       274 ~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~  353 (530)
T 2ooe_A          274 IWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDI  353 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcccc
Confidence            45566777765       68887       99999999998 79999999999999999999999999999999999998


Q ss_pred             CH-HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264           69 MS-KAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        69 ~~-~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      ++ .+|+.+|.++.+.|++++|+..|+++++..|....+..
T Consensus       354 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~~~~~~~  394 (530)
T 2ooe_A          354 DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYV  394 (530)
T ss_dssp             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTCCTHHHH
T ss_pred             CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCCchHHHH
Confidence            85 69999999999999999999999999999887654433

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.43  E-value=1.1e-06  Score=83.31  Aligned_cols=99  Identities=9%  Similarity=0.045  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCC
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIKLQNFTEAVADANRAIELE--------PSM   69 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--------p~~   69 (374)
                      .+...|..++..|+|++|+.+|.+++...+..      ..++..+|.+|..+|++++|+..+++++.+.        |..
T Consensus        55 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  134 (373)
T 1hz4_A           55 ATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMH  134 (373)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHH
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHH
Confidence            34566677777777777777777777664322      2335667777777777777777777777654        223


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~  102 (374)
                      ..++..+|.+++..|++++|..+|++++.+.+.
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~  167 (373)
T 1hz4_A          135 EFLVRIRAQLLWAWARLDEAEASARSGIEVLSS  167 (373)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhc
Confidence            455666777777777777777777777776654

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=98.40  E-value=1.8e-06  Score=81.72  Aligned_cols=97  Identities=20%  Similarity=0.226  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhC--------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----CH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEIS--------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-----MS   70 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~--------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-----~~   70 (374)
                      .+...|..++..|+|++|+.+|.+++...        |....++.++|.+|..+|++++|+..+.+++.+.+.     ..
T Consensus        95 ~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~  174 (373)
T 1hz4_A           95 SLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQL  174 (373)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHH
Confidence            35678999999999999999999999974        334567888999999999999999999999999875     34


Q ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           71 KAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        71 ~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      .+++.+|.++...|++++|..+|++++.+.
T Consensus       175 ~~~~~la~~~~~~g~~~~A~~~l~~a~~~~  204 (373)
T 1hz4_A          175 QCLAMLIQCSLARGDLDNARSQLNRLENLL  204 (373)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence            678899999999999999999999998774

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.37  E-value=2.5e-06  Score=84.46  Aligned_cols=104  Identities=12%  Similarity=-0.009  Sum_probs=76.6

Q ss_pred             HHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264            4 DLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRK   76 (374)
Q Consensus         4 ~l~~~g~~~~~~~---~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~l   76 (374)
                      .+...|..++..|   ++++|+.+|.++++.  .++.+++++|.+|..    .+++++|+..|++|+..+  ++.+++++
T Consensus       330 a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~L  405 (490)
T 2xm6_A          330 AQANLGAIYFRLGSEEEHKKAVEWFRKAAAK--GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQL  405 (490)
T ss_dssp             HHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHH
T ss_pred             HHHHHHHHHHhCCCcccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHH
Confidence            4566677776644   778888888888776  567788888888877    778888888888887754  57788888


Q ss_pred             HHHHHH----hcCHHHHHHHHHHHHhcCCC---ChhHHHHHH
Q 017264           77 ATACMK----LEEYETAKVALEKGASLAPG---DSRFTNLIK  111 (374)
Q Consensus        77 g~~~~~----lg~~~eA~~~~~~a~~l~p~---~~~~~~~~~  111 (374)
                      |.+|+.    .+++++|+.+|++++..+|+   +.....++.
T Consensus       406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~  447 (490)
T 2xm6_A          406 GEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEK  447 (490)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHT
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHH
Confidence            888887    78888888888888887743   554444443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.31  E-value=9.8e-07  Score=88.18  Aligned_cols=99  Identities=11%  Similarity=0.014  Sum_probs=85.0

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~   68 (374)
                      +..+.+.|..+...|+|++|+.+|.++|..     .+++   +..+.++|.+|..+|+|++|+..+.+|+.+     +|+
T Consensus       351 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~  430 (490)
T 3n71_A          351 LRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPS  430 (490)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            456789999999999999999999999987     3444   578999999999999999999999999975     566


Q ss_pred             C---HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           69 M---SKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        69 ~---~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      +   .+..-.++.++..++.|.+|...|.++.+..
T Consensus       431 Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~  465 (490)
T 3n71_A          431 HPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAA  465 (490)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            5   4456688999999999999999998875433

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=98.31  E-value=3.6e-06  Score=77.59  Aligned_cols=86  Identities=12%  Similarity=0.093  Sum_probs=79.5

Q ss_pred             HHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHc-----cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHH-hcCHHH
Q 017264           18 FELAYDLYSQAIEISPN--SAELFADRAQASIKL-----QNFTEAVADANRAIELEPSM-SKAYWRKATACMK-LEEYET   88 (374)
Q Consensus        18 y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l-----~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~~~-lg~~~e   88 (374)
                      ...|...+.+||+++|+  +..+|..+|..|.++     |+.++|.++|++|++++|+. ..+++.+|..++. .|++++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            47899999999999999  667999999999996     99999999999999999975 9999999999988 599999


Q ss_pred             HHHHHHHHHhcCCCC
Q 017264           89 AKVALEKGASLAPGD  103 (374)
Q Consensus        89 A~~~~~~a~~l~p~~  103 (374)
                      |..+|++++...|..
T Consensus       259 a~~~L~kAL~a~p~~  273 (301)
T 3u64_A          259 FDEALDRALAIDPES  273 (301)
T ss_dssp             HHHHHHHHHHCCGGG
T ss_pred             HHHHHHHHHcCCCCC
Confidence            999999999988874

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=98.31  E-value=1.5e-05  Score=78.79  Aligned_cols=106  Identities=10%  Similarity=-0.021  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            3 TDLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         3 ~~l~~~g~~~~~----~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      +.++..|..++.    .+++++|+.+|.++++.  .++.+++.+|.+|..    .+++++|+..|++++..  +++.+++
T Consensus        40 ~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~  115 (490)
T 2xm6_A           40 KAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALK--GLPQAQQ  115 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHH
T ss_pred             HHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHH
Confidence            456677777777    78888888888888775  567788888888888    78888888888888765  4777888


Q ss_pred             HHHHHHHH----hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           75 RKATACMK----LEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        75 ~lg~~~~~----lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ++|.+|..    .+++++|+.+|+++....  +......++.+.
T Consensus       116 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y  157 (490)
T 2xm6_A          116 NLGVMYHEGNGVKVDKAESVKWFRLAAEQG--RDSGQQSMGDAY  157 (490)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHH
T ss_pred             HHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHH
Confidence            88888887    778888888888876653  455555554443

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=98.27  E-value=3.7e-06  Score=64.36  Aligned_cols=68  Identities=19%  Similarity=0.146  Sum_probs=62.2

Q ss_pred             hHHHHHHHHHHHhccC---HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264            2 ATDLEKKAKEAFIDDY---FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~---y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~   69 (374)
                      ++.+...|..++..++   .++|..++.++|.++|+++.+++.+|..+++.|+|.+|+..+++++..+|..
T Consensus         6 ~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~   76 (93)
T 3bee_A            6 ATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN   76 (93)
T ss_dssp             HHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred             HHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence            3567788999976666   7999999999999999999999999999999999999999999999999874

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=98.27  E-value=9.1e-06  Score=65.79  Aligned_cols=102  Identities=16%  Similarity=0.097  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHHHHHHHH
Q 017264           18 FELAYDLYSQAIEISPNSAELFADRAQASIKLQN---FTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVAL   93 (374)
Q Consensus        18 y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~---~~~Al~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~eA~~~~   93 (374)
                      .....+.|.+-+ ...-++...+++|.|+.+..+   ..+++..++..+..+| ...+++|.+|++++++|+|.+|+.+.
T Consensus        23 L~~l~~qy~~E~-~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~  101 (134)
T 3o48_A           23 LEILRQQVVSEG-GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYV  101 (134)
T ss_dssp             HHHHHHHHHHTT-GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHh-CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            344445554433 333357899999999999754   4579999999999888 46889999999999999999999999


Q ss_pred             HHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           94 EKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        94 ~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +.+++..|+|..+......++.++.+.
T Consensus       102 d~lL~~eP~N~QA~~Lk~~Ie~ki~kd  128 (134)
T 3o48_A          102 DTLFEHERNNKQVGALKSMVEDKIQKE  128 (134)
T ss_dssp             HHHHTTCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhCCCCHHHHHHHHHHHHHHHhh
Confidence            999999999999999998888887653

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.27  E-value=7.4e-06  Score=80.74  Aligned_cols=107  Identities=12%  Similarity=0.001  Sum_probs=93.3

Q ss_pred             HHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----cCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264            4 DLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSAELFADRAQASIKL----QNFTEAVADANRAIELEPSMSKAYWRK   76 (374)
Q Consensus         4 ~l~~~g~~~~~~~---~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----~~~~~Al~~~~~al~l~p~~~~a~~~l   76 (374)
                      .++..|..+...|   ++.+|+..|.+++...+..+..++++|.+|...    +++.+|+..|++++   |+++.+++++
T Consensus       178 a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~L  254 (452)
T 3e4b_A          178 CYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSL  254 (452)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHH
T ss_pred             HHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHH
Confidence            4677888899999   999999999999999999999889999999766    79999999999998   8999999999


Q ss_pred             HHH-H--HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           77 ATA-C--MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        77 g~~-~--~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      |.+ +  ...+++++|+.+|+++.+..  +......++.+..
T Consensus       255 g~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~  294 (452)
T 3e4b_A          255 AQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGKLYY  294 (452)
T ss_dssp             HHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHH
Confidence            999 4  57899999999999998655  6777777776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=98.24  E-value=3.1e-05  Score=63.48  Aligned_cols=88  Identities=17%  Similarity=0.134  Sum_probs=78.7

Q ss_pred             CCCHHHHHHHHHHHHHccC---HHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264           33 PNSAELFADRAQASIKLQN---FTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        33 p~~~~~~~~ra~~~~~l~~---~~~Al~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      .-+....+++|.|+.+..+   ..+++..++..+...| ...+++|.+|+.++++|+|.+|+.+++.+++.+|+|.++..
T Consensus        36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~  115 (144)
T 1y8m_A           36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGA  115 (144)
T ss_dssp             TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHH
T ss_pred             CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHH
Confidence            4568999999999999865   4579999999999888 56789999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhh
Q 017264          109 LIKECEERIAEE  120 (374)
Q Consensus       109 ~~~~~~~~l~~~  120 (374)
                      ....++.++...
T Consensus       116 Lk~~Ie~~i~kd  127 (144)
T 1y8m_A          116 LKSMVEDKIQKE  127 (144)
T ss_dssp             HHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHh
Confidence            999888888664

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.23  E-value=1.2e-05  Score=65.83  Aligned_cols=93  Identities=14%  Similarity=0.018  Sum_probs=79.5

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~   90 (374)
                      .+|+++|+.+|.++++.....  +.  +|.+|...+.+.+|+.+|++|+..  .++.+++++|.+|..    .+++.+|+
T Consensus         8 ~~d~~~A~~~~~~aa~~g~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            8 KKDLKKAIQYYVKACELNEMF--GC--LSLVSNSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHHTTCTT--HH--HHHHTCTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHcCCCHh--hh--HHHHHHcCCCHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            468999999999999987443  33  999999999999999999999987  689999999999999    99999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           91 VALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+|+++.+.  .+......+..+..
T Consensus        82 ~~~~~Aa~~--g~~~a~~~Lg~~y~  104 (138)
T 1klx_A           82 QYYSKACGL--NDQDGCLILGYKQY  104 (138)
T ss_dssp             HHHHHHHHT--TCHHHHHHHHHHHH
T ss_pred             HHHHHHHcC--CCHHHHHHHHHHHH
Confidence            999999887  45666666666544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=98.18  E-value=7.2e-06  Score=68.44  Aligned_cols=77  Identities=10%  Similarity=0.028  Sum_probs=68.6

Q ss_pred             HHHHHHHHHHHhcc---CHHHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         3 ~~l~~~g~~~~~~~---~y~~Al~~y~~aL~~~-p-~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      +..|+.|..+.+.+   +++++|.++...++.+ | .+.++++++|.+|+++++|.+|+++++++++++|++..+..-+.
T Consensus        33 ~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ieP~n~QA~~Lk~  112 (152)
T 1pc2_A           33 STQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  112 (152)
T ss_dssp             HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence            56789999999988   7889999999999998 7 56899999999999999999999999999999999988766554


Q ss_pred             HH
Q 017264           78 TA   79 (374)
Q Consensus        78 ~~   79 (374)
                      .+
T Consensus       113 ~i  114 (152)
T 1pc2_A          113 LI  114 (152)
T ss_dssp             HH
T ss_pred             HH
Confidence            44

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=98.16  E-value=1.4e-05  Score=78.75  Aligned_cols=99  Identities=11%  Similarity=0.025  Sum_probs=59.3

Q ss_pred             HHHHHHHHhc----cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH---HHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            6 EKKAKEAFID----DYFELAYDLYSQAIEISPNSAELFADRAQAS---IKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         6 ~~~g~~~~~~----~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~---~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..|..+...    +++++|+.+|.+++   |.++.+++++|.+|   ...+++.+|+.+|++++..+  ++.+++++|.
T Consensus       217 ~~Lg~~y~~g~~~~~d~~~A~~~~~~aa---~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~  291 (452)
T 3e4b_A          217 DSVARVLGDATLGTPDEKTAQALLEKIA---PGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD--QPRAELLLGK  291 (452)
T ss_dssp             HHHHHHHTCGGGSSCCHHHHHHHHHHHG---GGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--CHHHHHHHHH
T ss_pred             HHHHHHHhCCCCCCCCHHHHHHHHHHHc---CCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHH
Confidence            4555555444    56666666666665   56666666666663   34566666666666666443  5666666666


Q ss_pred             HHHHhc-----CHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           79 ACMKLE-----EYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        79 ~~~~lg-----~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      +|. .|     ++.+|+.+|+++.   +.+......++.+
T Consensus       292 ~y~-~G~g~~~d~~~A~~~~~~Aa---~g~~~A~~~Lg~~  327 (452)
T 3e4b_A          292 LYY-EGKWVPADAKAAEAHFEKAV---GREVAADYYLGQI  327 (452)
T ss_dssp             HHH-HCSSSCCCHHHHHHHHHTTT---TTCHHHHHHHHHH
T ss_pred             HHH-cCCCCCCCHHHHHHHHHHHh---CCCHHHHHHHHHH
Confidence            665 44     6666666666665   5555555555444

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=98.04  E-value=2.8e-05  Score=65.43  Aligned_cols=108  Identities=13%  Similarity=0.125  Sum_probs=83.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---CC---
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------AELFADRAQASIKLQNFTEAVADANRAIELEP---SM---   69 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p---~~---   69 (374)
                      ++.....++..+.|+.|+-+++.++....++         ..+++.+|.+++..++|.+|+..|.+||++..   ..   
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            6788999999999999999999987774333         34888999999999999999999999986531   11   


Q ss_pred             -------------------HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHH
Q 017264           70 -------------------SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        70 -------------------~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                                         .+..|++|.||..++++.+|+..++... .....+.+-..++++
T Consensus       103 ~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip-~k~Rt~kvnm~LakL  164 (167)
T 3ffl_A          103 RPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP-SRQRTPKINMLLANL  164 (167)
T ss_dssp             --------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC-GGGCCHHHHHHHHHH
T ss_pred             cccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC-chhcCHHHHHHHHHH
Confidence                               2688999999999999999999988532 222234444444444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.02  E-value=4.3e-05  Score=71.47  Aligned_cols=99  Identities=11%  Similarity=0.019  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC--CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC----CHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP--NSAELFADRAQASIKLQNFTEAVADANRAIELEPS----MSKAYWRKA   77 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p--~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~----~~~a~~~lg   77 (374)
                      .+...|..++..|++++|+..|.+.|..+|  .+.+++..++.+|.++|+.+.|...++++.+.+|+    .-.....++
T Consensus       102 ~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~~~d~~~~~d~~l~~La  181 (310)
T 3mv2_B          102 ELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNAIEDTVSGDNEMILNLA  181 (310)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccccccchHHHHHHH
Confidence            346788999999999999999999999987  78999999999999999999999999999999983    223445555


Q ss_pred             HH--HHHhc--CHHHHHHHHHHHHhcCCC
Q 017264           78 TA--CMKLE--EYETAKVALEKGASLAPG  102 (374)
Q Consensus        78 ~~--~~~lg--~~~eA~~~~~~a~~l~p~  102 (374)
                      .+  .+..|  ++.+|...|+.+....|+
T Consensus       182 ea~v~l~~g~~~~q~A~~~f~El~~~~p~  210 (310)
T 3mv2_B          182 ESYIKFATNKETATSNFYYYEELSQTFPT  210 (310)
T ss_dssp             HHHHHHHHTCSTTTHHHHHHHHHHTTSCS
T ss_pred             HHHHHHHhCCccHHHHHHHHHHHHHhCCC
Confidence            44  56566  999999999999888886

>3gla_A Low molecular weight heat shock protein; HSPA, SHP, SHSP, high resolution, stress response, chaperone; 1.64A {Xanthomonas axonopodis PV} PDB: 3gt6_A 3guf_A

Probab=98.01  E-value=2.7e-05  Score=60.29  Aligned_cols=78  Identities=18%  Similarity=0.179  Sum_probs=66.8

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C----------CeeeeccccccccccCceEEEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRYEV  239 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~~v  239 (374)
                      +++|+++++.+.|.+-++|+.++++.|.+.++.|.|+.....     +          ..|.-.+.|...|+++..+.+.
T Consensus         6 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~~~~~~er~~g~f~r~~~LP~~vd~~~i~A~~   85 (100)
T 3gla_A            6 RVDIKEEVNHFVLYADLPGIDPSQIEVQMDKGILSIRGERKSESSTETERFSRIERRYGSFHRRFALPDSADADGITAAG   85 (100)
T ss_dssp             CEEEEECSSEEEEEEECTTSCGGGCEEEEETTEEEEEEEECCGGGSSGGGEEEECCCCEEEEEEEECCTTBCTTSCEEEE
T ss_pred             cEEEEECCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEEcCcCccCCccEEEEeecceEEEEEEECCCCcChHHeEEEE
Confidence            579999999999999999999999999999999999864321     1          1356678899999999999999


Q ss_pred             cCcEEEEEEeecC
Q 017264          240 LSTKVEIRLAKAE  252 (374)
Q Consensus       240 ~~~kiei~L~K~~  252 (374)
                      ....++|+|.|..
T Consensus        86 ~~GvL~I~~pK~~   98 (100)
T 3gla_A           86 RNGVLEIRIPKRP   98 (100)
T ss_dssp             ETTEEEEEEEBC-
T ss_pred             eCCEEEEEEecCC
Confidence            9999999999975

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.99  E-value=3.6e-05  Score=84.30  Aligned_cols=105  Identities=13%  Similarity=0.148  Sum_probs=86.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------------   67 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p----------------   67 (374)
                      .+...|..++..|+|++|+.+|.+|        ..|..+|.||.++|+|++|++.+++|.....                
T Consensus      1197 d~~~iGd~le~eg~YeeA~~~Y~kA--------~ny~rLA~tLvkLge~q~AIEaarKA~n~~aWkev~~acve~~Ef~L 1268 (1630)
T 1xi4_A         1197 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRL 1268 (1630)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHhh--------hHHHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHhhhhHHHH
Confidence            5678999999999999999999996        4789999999999999999999988844332                


Q ss_pred             ---------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           68 ---------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        68 ---------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                               .+++.+..++..|..+|.|++|+..|++++.+++.+..+...+..+..+
T Consensus      1269 A~~cgl~Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1269 AQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK 1326 (1630)
T ss_pred             HHHHHHhhhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHh
Confidence                     1344556777788899999999999999999998887776666655543

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.98  E-value=3.2e-05  Score=74.36  Aligned_cols=65  Identities=17%  Similarity=0.182  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAYWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~------p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ..++.++|.+|..+|+|.+|+..+..++...      +....+++.+|.+|..+|+|.+|..+|++++...
T Consensus       135 ~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~  205 (434)
T 4b4t_Q          135 HSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAA  205 (434)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHh
Confidence            3456677778888888888888887777652      2345677788888888888888888888877654

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.98  E-value=1.6e-05  Score=77.82  Aligned_cols=103  Identities=14%  Similarity=0.154  Sum_probs=68.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC----------------
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP----------------   67 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p----------------   67 (374)
                      .+...|..++..|.|++|+.+|+++        ..|..+|.|+.++|+|++|++.+.+|.  ++                
T Consensus       124 a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef  193 (449)
T 1b89_A          124 HIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEF  193 (449)
T ss_dssp             -------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcH
Confidence            4567788888888888888888875        357888888888888888888888872  22                


Q ss_pred             -----------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           68 -----------SMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        68 -----------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                                 .+++-...+..+|..+|++++|+..|++++.+++.+..+...++.+..+
T Consensus       194 ~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le~ah~~~ftel~il~~k  253 (449)
T 1b89_A          194 RLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSK  253 (449)
T ss_dssp             HHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHh
Confidence                       1222233344678889999999999999999999998877777766653

>2k8q_A Protein SHQ1; beta-sandwich, CS domain, nucleus, structural protein; NMR {Saccharomyces cerevisiae}

Probab=97.96  E-value=7.9e-06  Score=66.09  Aligned_cols=82  Identities=16%  Similarity=0.327  Sum_probs=70.1

Q ss_pred             CccccccCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeecccccccc-ccCc--eEEEEcCcEEEEEEe
Q 017264          175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKI-IPAK--CRYEVLSTKVEIRLA  249 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I-~p~~--s~~~v~~~kiei~L~  249 (374)
                      |+.=.|++++|+|.|.++.+.  ..++.+.+.++.|.++.+     .|.|.+.|-|+| +.+.  ++|......+.|+|.
T Consensus         5 ~F~itQd~e~viV~Ik~P~~~~~~sdiei~v~~~~F~F~~~-----PYyLRL~LP~~V~e~~~~kA~YD~d~~~~~VtLp   79 (134)
T 2k8q_A            5 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKVA   79 (134)
T ss_dssp             EEEEEECSSEEEEEEECCSSCCCSSSCCCEECSSSEEECSS-----SSCEEECCSSCEECCSSCEEEEETTTTEEEEEEE
T ss_pred             eEEEEECCCEEEEEEEcCccccCccccEEEEeCCEEEEecC-----CeEEEecCCCeeecCCCcceeEeccCCEEEEEEe
Confidence            667789999999999999998  889999999999888865     799999999999 4444  456666679999999


Q ss_pred             ecCC-CCCCcccc
Q 017264          250 KAEP-IQWSSLEF  261 (374)
Q Consensus       250 K~~~-~~W~~L~~  261 (374)
                      |..+ +.|+.|.-
T Consensus        80 K~~~Ge~F~dLD~   92 (134)
T 2k8q_A           80 KLNKNEYFEDLDL   92 (134)
T ss_dssp             ESSTTCCCSSTTC
T ss_pred             CCCCCCCCCCccc
Confidence            9986 68999974

>4fei_A Heat shock protein-related protein; stress response, alpha-crystallin domain fold, aggregates, C chaperone; 2.40A {Deinococcus radiodurans}

Probab=97.92  E-value=6.6e-05  Score=58.40  Aligned_cols=79  Identities=16%  Similarity=0.213  Sum_probs=68.0

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCC----------eeeeccccccccccCceEEEEcCcEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEE----------AYHFQPRLFGKIIPAKCRYEVLSTKV  244 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~----------~y~~~~~L~~~I~p~~s~~~v~~~ki  244 (374)
                      .++|+++++.+.|.+.++|+.++++.|.+.++.|.|+.......          .|.-.+.|...|+++..+.+.....+
T Consensus         8 ~~di~e~~~~~~v~~~lPG~~~edi~v~~~~~~L~I~g~~~~~~~~~~~er~~g~f~R~~~LP~~vd~~~i~A~~~~GvL   87 (102)
T 4fei_A            8 AADWRDAGTHLDLLLDVPGVDAGTLALAEDGGQLTVSGERPGTEHLLRSERPSGRFVRELAFPEPVRPASGVASLAGGVL   87 (102)
T ss_dssp             CEEEEEETTEEEEEEECTTCCGGGCEEEEETTEEEEEEEECCCSSCSSCCSEEEEEEEEEECSSCBCTTCCEEEEETTEE
T ss_pred             cEEEEEcCCEEEEEEECCCCchHhEEEEEECCEEEEEEEEecCCCEEEEEEeccEEEEEEECCCCcchhHcEEEEECCEE
Confidence            57999999999999999999999999999999999986432111          36667789999999999999999999


Q ss_pred             EEEEeecCC
Q 017264          245 EIRLAKAEP  253 (374)
Q Consensus       245 ei~L~K~~~  253 (374)
                      +|+|.|.++
T Consensus        88 ~I~lpK~~~   96 (102)
T 4fei_A           88 TVRFEKLRP   96 (102)
T ss_dssp             EEEEEBSSC
T ss_pred             EEEEEccCc
Confidence            999999764

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=97.92  E-value=4.1e-05  Score=71.62  Aligned_cols=99  Identities=8%  Similarity=-0.018  Sum_probs=82.6

Q ss_pred             HHHHHhcc--CHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHHh----------CCCCHHHHH
Q 017264            9 AKEAFIDD--YFELAYDLYSQAIEISPN--SAELFADRAQASIKLQNFTEAVADANRAIEL----------EPSMSKAYW   74 (374)
Q Consensus         9 g~~~~~~~--~y~~Al~~y~~aL~~~p~--~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l----------~p~~~~a~~   74 (374)
                      |...+..|  ++.+|+..|++++...|.  ....+++   |++++|++++|..+++.++.+          +|+++.++.
T Consensus       183 a~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln---~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~La  259 (310)
T 3mv2_B          183 SYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLN---LHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLA  259 (310)
T ss_dssp             HHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHH---HHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHH
T ss_pred             HHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHH---HHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHH
Confidence            43355445  999999999999888886  3445555   899999999999999987776          588999999


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      ++..+.+.+|+  +|.++++++.+++|+++-+.....+
T Consensus       260 N~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i~d~~~k  295 (310)
T 3mv2_B          260 NQITLALMQGL--DTEDLTNQLVKLDHEHAFIKHHQEI  295 (310)
T ss_dssp             HHHHHHHHTTC--TTHHHHHHHHHTTCCCHHHHHHHHH
T ss_pred             HHHHHHHHhCh--HHHHHHHHHHHhCCCChHHHHHHHH
Confidence            99999999998  8999999999999999976665544

>3aab_A Putative uncharacterized protein ST1653; alpha-crystallin domain, chaperone; 1.85A {Sulfolobus tokodaii} PDB: 3aac_A

Probab=97.78  E-value=0.0001  Score=59.38  Aligned_cols=79  Identities=13%  Similarity=0.048  Sum_probs=68.2

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEee-eEEEEEEEcCCC---C--------eeeeccccccccccCce-EEEEcC
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGE-QILSVSIDVPGE---E--------AYHFQPRLFGKIIPAKC-RYEVLS  241 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~-~~l~v~~~~~~~---~--------~y~~~~~L~~~I~p~~s-~~~v~~  241 (374)
                      .++|+++++.+.|.+.++|+.++++.|.+.+ +.|.|+......   .        .|.-.+.|...|+++.. +.+...
T Consensus        26 ~~di~e~~~~~~v~~~lPG~~~edi~V~v~~~~~L~I~g~~~~~~~~~~~~~Er~~~f~R~~~LP~~vd~~~i~~A~~~~  105 (123)
T 3aab_A           26 PVDMYEEGGYLVVVADLAGFNKEKIKARVSGQNELIIEAEREITEPGVKYLTQRPKYVRKVIRLPYNVAKDAEISGKYEN  105 (123)
T ss_dssp             CEEEEEETTEEEEEEECCSCCGGGCEEEEETTTEEEEEEECCCCCCSCEEEECSCSEEEEEEECSSEECTTCCCEEEEET
T ss_pred             cEEEEEcCCEEEEEEECCCCCHHHEEEEEeCCCEEEEEEEEeccCCCeEEEEEEeEEEEEEEECCCCcCcchhCeeEEcC
Confidence            5899999999999999999999999999999 999999764321   1        45666789999999998 888889


Q ss_pred             cEEEEEEeecCC
Q 017264          242 TKVEIRLAKAEP  253 (374)
Q Consensus       242 ~kiei~L~K~~~  253 (374)
                      .-+.|+|.|...
T Consensus       106 GvL~I~lPK~~~  117 (123)
T 3aab_A          106 GVLTIRIPIAGT  117 (123)
T ss_dssp             TEEEEEEEGGGE
T ss_pred             CEEEEEEEcCCC
Confidence            999999999754

>3eud_A Protein SHQ1; CS domain HSP20-like domain SHQ1 H/ACA snoRNP ribosome biogenesis, nucleus, nuclear protein; HET: MSE; 2.40A {Saccharomyces cerevisiae}

Probab=97.77  E-value=0.00011  Score=57.47  Aligned_cols=82  Identities=17%  Similarity=0.351  Sum_probs=70.3

Q ss_pred             CccccccCCeEEEEEEeCCCC--CCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCc---eEEEEcCcEEEEEEe
Q 017264          175 RHEFYQKPEEVVVTVFAKGIP--AKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAK---CRYEVLSTKVEIRLA  249 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~--~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~---s~~~v~~~kiei~L~  249 (374)
                      ++.=.|++++|+|.|.++.+.  ..++.+.+.++.+.+...     +|.|.+.|-++|+.++   ++|.+....+.|+|.
T Consensus        19 ~F~itQDdefv~I~I~~p~ir~~a~~~ei~vd~~~F~F~~~-----PYyLRL~lP~~vved~~~~A~YD~d~g~~~v~lp   93 (115)
T 3eud_A           19 RFSITQDEEFIFLKIFISNIRFSAVGLEIIIQENMIIFHLS-----PYYLRLRFPHELIDDERSTAQYDSKDECINVKVA   93 (115)
T ss_dssp             CEEEEECSSEEEEEEECCSCCCCSSSCEEEEETTEEEEEET-----TEEEEEECSSCEECSTTCEEEEETTTTEEEEEEE
T ss_pred             cEEEEECCCEEEEEEEcCceecccCccEEEEeCCEEEEecC-----CeEEEEecCcceecCCCcceEEeCCCcEEEEEEc
Confidence            678889999999999999877  679999999999998875     7999999999996544   478887889999999


Q ss_pred             ecCC-CCCCcccc
Q 017264          250 KAEP-IQWSSLEF  261 (374)
Q Consensus       250 K~~~-~~W~~L~~  261 (374)
                      |..+ +..+.|.-
T Consensus        94 K~~~GE~F~dLDm  106 (115)
T 3eud_A           94 KLNKNEYFEDLDL  106 (115)
T ss_dssp             ESSTTCCCCCTTC
T ss_pred             CCcCCCcCCCccc
Confidence            9986 67888763

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=97.75  E-value=9.5e-05  Score=71.02  Aligned_cols=97  Identities=12%  Similarity=0.074  Sum_probs=83.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI------SPNSAELFADRAQASIKLQNFTEAVADANRAIELEP---S----M   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p---~----~   69 (374)
                      ..+...|..++..|+|.+|+.++.+++..      .+....++..++.+|..+|+|.+|+..+.+++.+.+   .    .
T Consensus       136 ~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~  215 (434)
T 4b4t_Q          136 SLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTV  215 (434)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHH
Confidence            34578899999999999999999999887      233367999999999999999999999999998753   2    2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      ...+..+|.++...++|.+|..+|..+++.
T Consensus       216 ~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          216 AELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             HHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence            456778899999999999999999998764

>2wj5_A Heat shock protein beta-6; chaperone, disulfide bond, stress response; 1.12A {Rattus norvegicus}

Probab=97.68  E-value=0.00019  Score=55.62  Aligned_cols=78  Identities=17%  Similarity=0.160  Sum_probs=66.0

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCceEEEE-cCcEEEE
Q 017264          176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  246 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei  246 (374)
                      .|++++++.+.|.+-++|+.++++.|.+..+.|.|+....   ++     .+|.-.+.|...|+++..+.++ ....+.|
T Consensus         4 vdi~e~~~~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~nGvL~I   83 (101)
T 2wj5_A            4 AQVPTDPGYFSVLLDVKHFSPEEISVKVVGDHVEVHARHEERPDEHGFIAREFHRRYRLPPGVDPAAVTSALSPEGVLSI   83 (101)
T ss_dssp             CCCCCCSSCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEECSSTTCCEEEEEEEEEECCTTBCTTCCEEEECTTSEEEE
T ss_pred             EEEEEeCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHCEEEECCCCEEEE
Confidence            5899999999999999999999999999999999987432   11     1255677899999999999999 6889999


Q ss_pred             EEeecCC
Q 017264          247 RLAKAEP  253 (374)
Q Consensus       247 ~L~K~~~  253 (374)
                      +|.|...
T Consensus        84 ~lPK~~~   90 (101)
T 2wj5_A           84 QATPASA   90 (101)
T ss_dssp             EECBCCC
T ss_pred             EEECCCc
Confidence            9999653

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=97.67  E-value=0.00019  Score=78.69  Aligned_cols=79  Identities=15%  Similarity=0.101  Sum_probs=64.8

Q ss_pred             CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           33 PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        33 p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      .+.+.+|+++|.++...|++.+|+..|.+|     +++.+|++.|.++.++|+|++|+.+|..+....++ +.+...++.
T Consensus      1102 vn~p~vWsqLAKAql~~G~~kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e-~~Idt~Laf 1175 (1630)
T 1xi4_A         1102 CNEPAVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARE-SYVETELIF 1175 (1630)
T ss_pred             cCCHHHHHHHHHHHHhCCCHHHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhccc-ccccHHHHH
Confidence            356889999999999999999999999776     88899999999999999999999999999988744 223334555


Q ss_pred             HHHHH
Q 017264          113 CEERI  117 (374)
Q Consensus       113 ~~~~l  117 (374)
                      +..++
T Consensus      1176 aYAKl 1180 (1630)
T 1xi4_A         1176 ALAKT 1180 (1630)
T ss_pred             HHHhh
Confidence            54444

>1gme_A Heat shock protein 16.9B; small heat shock protein, chaperone, alpha-crystallin; 2.70A {Triticum aestivum} SCOP: b.15.1.1 PDB: 2h50_A 2h53_A 2byu_A

Probab=97.59  E-value=0.00027  Score=59.02  Aligned_cols=80  Identities=19%  Similarity=0.233  Sum_probs=67.1

Q ss_pred             cCccccccCCeEEEEEEeCCCCCCceEEEEe-eeEEEEEEEcCC-----C----------CeeeeccccccccccCceEE
Q 017264          174 YRHEFYQKPEEVVVTVFAKGIPAKNVTVDFG-EQILSVSIDVPG-----E----------EAYHFQPRLFGKIIPAKCRY  237 (374)
Q Consensus       174 ~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~-~~~l~v~~~~~~-----~----------~~y~~~~~L~~~I~p~~s~~  237 (374)
                      .+++|+++++.+.|.+.++|+.+++|.|.+. .+.|.|+.....     +          ..|.-.+.|-..|+++..+.
T Consensus        44 p~~di~e~~d~~~v~~dlPGv~kedI~V~v~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A  123 (151)
T 1gme_A           44 ARMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKA  123 (151)
T ss_dssp             GCEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEE
T ss_pred             CceEEEEcCCEEEEEEECCCCChHHEEEEEecCCEEEEEEEEccccccCCceEEEEeEeccEEEEEEECCCCccccceEE
Confidence            3689999999999999999999999999995 679999874321     1          13556778999999999999


Q ss_pred             EEcCcEEEEEEeecCC
Q 017264          238 EVLSTKVEIRLAKAEP  253 (374)
Q Consensus       238 ~v~~~kiei~L~K~~~  253 (374)
                      +.....++|+|.|...
T Consensus       124 ~~~nGvL~I~lPK~~~  139 (151)
T 1gme_A          124 GLENGVLTVTVPKAEV  139 (151)
T ss_dssp             EEETTEEEEEEECCCC
T ss_pred             EEECCEEEEEEEccCc
Confidence            9999999999999753

>4eld_A MJ16.5-P1, small heat shock protein HSP16.5; chaperone; 2.70A {Methanocaldococcus jannaschii} PDB: 1shs_A

Probab=97.58  E-value=0.00029  Score=59.48  Aligned_cols=78  Identities=12%  Similarity=0.145  Sum_probs=67.2

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC-----C-----------CeeeeccccccccccCceEEEE
Q 017264          176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG-----E-----------EAYHFQPRLFGKIIPAKCRYEV  239 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~-----~-----------~~y~~~~~L~~~I~p~~s~~~v  239 (374)
                      ++++++++.+.|.+.++|+.+++|.|.+.++.|.|+.....     +           ..|.-.+.|-..|+++..+.+.
T Consensus        59 vdi~e~~~~~~v~~dlPG~~~edi~V~~~~~~L~I~g~~~~~~~~~~~~~~~~Er~~~g~f~R~~~LP~~vd~~~i~A~~  138 (161)
T 4eld_A           59 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF  138 (161)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCSSCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eeEEEeCCEEEEEEECCCCChHhEEEEEECCEEEEEEEEcccccCCCceEEEEEeeccccEEEEEECCCCcccccEEEEE
Confidence            79999999999999999999999999999999999875432     1           1455667899999999988889


Q ss_pred             cCcEEEEEEeecCC
Q 017264          240 LSTKVEIRLAKAEP  253 (374)
Q Consensus       240 ~~~kiei~L~K~~~  253 (374)
                      ....++|+|-|.+.
T Consensus       139 ~nGvL~I~lpK~~~  152 (161)
T 4eld_A          139 ENGVLSVILPKAES  152 (161)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEcCCC
Confidence            89999999999753

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.52  E-value=0.00015  Score=71.12  Aligned_cols=81  Identities=10%  Similarity=0.003  Sum_probs=65.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~   68 (374)
                      +..+.+.|..+...|+|++|+.+|.++|..     .+++   +..++++|.+|..+|++++|+..+.+|+.+     +|+
T Consensus       329 ~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~  408 (429)
T 3qwp_A          329 LKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGRE  408 (429)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCC
Confidence            456788999999999999999999999987     3444   578999999999999999999999999975     566


Q ss_pred             CHH---HHHHHHHHHHH
Q 017264           69 MSK---AYWRKATACMK   82 (374)
Q Consensus        69 ~~~---a~~~lg~~~~~   82 (374)
                      ++.   .+.+++.+...
T Consensus       409 Hp~~~~~~~~l~~~~~e  425 (429)
T 3qwp_A          409 HSLIEDLILLLEECDAN  425 (429)
T ss_dssp             SHHHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHH
Confidence            654   33445555433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.46  E-value=0.00053  Score=55.16  Aligned_cols=77  Identities=12%  Similarity=0.052  Sum_probs=65.6

Q ss_pred             HHHHHHHHHHHhccCHHH---HHHHHHHHHHhC-C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFEL---AYDLYSQAIEIS-P-NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~---Al~~y~~aL~~~-p-~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      +..|+.|..+...++-..   +|.++...++.+ | ..-+.++.+|.+++++|+|.+|+++++.+|+..|++..+.-.+.
T Consensus        36 ~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~~eP~n~QA~~Lk~  115 (126)
T 1nzn_A           36 STQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELER  115 (126)
T ss_dssp             HHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence            456888888988888766   999999998886 4 45689999999999999999999999999999999988765544


Q ss_pred             HH
Q 017264           78 TA   79 (374)
Q Consensus        78 ~~   79 (374)
                      .+
T Consensus       116 ~i  117 (126)
T 1nzn_A          116 LI  117 (126)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.43  E-value=0.0002  Score=70.25  Aligned_cols=71  Identities=13%  Similarity=0.061  Sum_probs=61.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh-----CCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----CCC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI-----SPNS---AELFADRAQASIKLQNFTEAVADANRAIEL-----EPS   68 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~-----~p~~---~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----~p~   68 (374)
                      +..+.+.|..+...|+|++|+.+|.++|..     .+++   +..+.++|.+|..+|+|++|+..+++|+.+     +|+
T Consensus       340 a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~  419 (433)
T 3qww_A          340 LHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIAIMEVAHGKD  419 (433)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTT
T ss_pred             HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHcCCC
Confidence            456789999999999999999999999987     3444   578999999999999999999999999975     567


Q ss_pred             CHHH
Q 017264           69 MSKA   72 (374)
Q Consensus        69 ~~~a   72 (374)
                      ++..
T Consensus       420 Hp~~  423 (433)
T 3qww_A          420 HPYI  423 (433)
T ss_dssp             CHHH
T ss_pred             ChHH
Confidence            6643

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.40  E-value=0.0018  Score=59.58  Aligned_cols=81  Identities=15%  Similarity=0.065  Sum_probs=65.4

Q ss_pred             CCCCHHHHHHHHHHHHH---c--------cCHHHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHh-----cCHHHHHHHH
Q 017264           32 SPNSAELFADRAQASIK---L--------QNFTEAVADANRAIELEPS--MSKAYWRKATACMKL-----EEYETAKVAL   93 (374)
Q Consensus        32 ~p~~~~~~~~ra~~~~~---l--------~~~~~Al~~~~~al~l~p~--~~~a~~~lg~~~~~l-----g~~~eA~~~~   93 (374)
                      +|.++++++-.|.....   +        +....|...+++|++++|+  ++.+|..+|..|+.+     |+.+.|..+|
T Consensus       148 ~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~f  227 (301)
T 3u64_A          148 TRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAF  227 (301)
T ss_dssp             CGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHH
T ss_pred             CccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHH
Confidence            55667788877777644   1        3456789999999999999  677999999999996     9999999999


Q ss_pred             HHHHhcCCCC-hhHHHHHHH
Q 017264           94 EKGASLAPGD-SRFTNLIKE  112 (374)
Q Consensus        94 ~~a~~l~p~~-~~~~~~~~~  112 (374)
                      +++++++|+. ......++.
T Consensus       228 erAL~LnP~~~id~~v~YA~  247 (301)
T 3u64_A          228 EHLTRYCSAHDPDHHITYAD  247 (301)
T ss_dssp             HHHHHHCCTTCSHHHHHHHH
T ss_pred             HHHHHhCCCCCchHHHHHHH
Confidence            9999999975 655554444

>3l1e_A Alpha-crystallin A chain; lens transparency, polydispersity, protein aggregation, CRYS eye lens protein, chaperone; 1.15A {Bos taurus} PDB: 3l1f_A 3n3e_A

Probab=97.38  E-value=0.00061  Score=53.24  Aligned_cols=77  Identities=13%  Similarity=0.166  Sum_probs=65.3

Q ss_pred             cccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCceEEEE-cCcEEEEE
Q 017264          177 EFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIR  247 (374)
Q Consensus       177 ~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~  247 (374)
                      +++++++.+.|.+-++|+.++++.|.+..+.|.|+....   ++     ..|.-.+.|...|+++..+..+ ....+.|+
T Consensus         6 ~i~e~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~eF~R~~~LP~~vd~~~i~A~~s~~GvL~I~   85 (106)
T 3l1e_A            6 EVRSDRDKFVIFLDVKHFSPEDLTVKVQEDFVEIHGKHNERQDDHGYISREFHRRYRLPSNVDQSALSCSLSADGMLTFS   85 (106)
T ss_dssp             EEEECSSEEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEETTTEEEEEEEEEEEECCTTBCTTSCEEEECTTSEEEEE
T ss_pred             EEEEcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEE
Confidence            688999999999999999999999999999999987421   11     1355667899999999999999 68899999


Q ss_pred             EeecCC
Q 017264          248 LAKAEP  253 (374)
Q Consensus       248 L~K~~~  253 (374)
                      |.|..+
T Consensus        86 ~PK~~~   91 (106)
T 3l1e_A           86 GPKIPS   91 (106)
T ss_dssp             EEBCCC
T ss_pred             EEccCc
Confidence            999764

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.32  E-value=0.00064  Score=64.87  Aligned_cols=69  Identities=17%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      +...|..++..|++++|+..+++|+.++|+ ..+|..+|.++.-.|++++|+..|.+|++++|.....++
T Consensus       280 ~~alal~~l~~gd~d~A~~~l~rAl~Ln~s-~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~~t~~~  348 (372)
T 3ly7_A          280 YQIKAVSALVKGKTDESYQAINTGIDLEMS-WLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGANTLYW  348 (372)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcChHHH
Confidence            444566777789999999999999999975 778899999999999999999999999999998864333

>3q9p_A Heat shock protein beta-1; alpha-crystallin domain, chaperone, charcot-marie-tooth DISE neuronopathy, IG-like fold, stress response; 2.00A {Homo sapiens} PDB: 3q9q_A

Probab=97.31  E-value=0.0017  Score=48.45  Aligned_cols=73  Identities=7%  Similarity=0.101  Sum_probs=62.0

Q ss_pred             cccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC--------CCeeeeccccccccccCceEEEEc-CcEEEEEEe
Q 017264          179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG--------EEAYHFQPRLFGKIIPAKCRYEVL-STKVEIRLA  249 (374)
Q Consensus       179 ~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~--------~~~y~~~~~L~~~I~p~~s~~~v~-~~kiei~L~  249 (374)
                      +++++.+.|.+-++|+.+++|.|.+..+.|.|+.....        ...|.-.+.|...|+++..+.++. ...+.|+|-
T Consensus         3 ~E~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~~F~R~~~LP~~vd~~~i~A~~~~~GvL~I~lP   82 (85)
T 3q9p_A            3 SHTADRWRVSLDVNHFAPDELTVKTKDGVVEITGKHAARQDEHGYISRCFTRKYTLPPGVDPTQVSSSLSPEGTLTVEAP   82 (85)
T ss_dssp             CCCCCEEEEEEECTTTCCSEEEEEEETTEEEEEEEEC-------CCCEEEEEEEECCTTCCGGGCEEEECTTSEEEEEEE
T ss_pred             cCcCCEEEEEEECCCCChHHEEEEEECCEEEEEEEEccccCCCCEEEEEEEEEEECCCCcChHHcEEEECCCCEEEEEEE
Confidence            47899999999999999999999999999999875321        124666788999999999999998 789999998


Q ss_pred             ec
Q 017264          250 KA  251 (374)
Q Consensus       250 K~  251 (374)
                      |.
T Consensus        83 K~   84 (85)
T 3q9p_A           83 MP   84 (85)
T ss_dssp             CC
T ss_pred             cC
Confidence            85

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=97.23  E-value=0.0046  Score=59.55  Aligned_cols=95  Identities=16%  Similarity=0.045  Sum_probs=80.1

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADANR   61 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------------------~~~~~~ra~~~~~l~~~~~Al~~~~~   61 (374)
                      .+...|......++...|+..|.+||.+....                      ..++..++.++..+|++.+|+..+..
T Consensus       117 ~l~~~~~~~~~~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~  196 (388)
T 2ff4_A          117 AEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEA  196 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            45566777777899999999999999984221                      13444567778889999999999999


Q ss_pred             HHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Q 017264           62 AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGAS   98 (374)
Q Consensus        62 al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~   98 (374)
                      ++..+|.+-.+|..+-.+|+..|+..+|+..|+.+.+
T Consensus       197 ~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          197 LTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999998754

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=97.22  E-value=0.0025  Score=51.50  Aligned_cols=77  Identities=12%  Similarity=-0.001  Sum_probs=64.8

Q ss_pred             HHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y---~~Al~~y~~aL~~~p~-~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..|+.|-.+...++-   ..+|.++...++.+|. .-+.++.+|.+++++|+|.+|+++++.+++..|++..+.-.+..
T Consensus        41 qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~~Lk~~  120 (134)
T 3o48_A           41 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  120 (134)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHHHHHHH
Confidence            4567788888877654   5799999999999884 47899999999999999999999999999999999887655444


Q ss_pred             H
Q 017264           79 A   79 (374)
Q Consensus        79 ~   79 (374)
                      +
T Consensus       121 I  121 (134)
T 3o48_A          121 V  121 (134)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=97.21  E-value=0.0039  Score=51.00  Aligned_cols=77  Identities=12%  Similarity=-0.001  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhccCH---HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYF---ELAYDLYSQAIEISPN-SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y---~~Al~~y~~aL~~~p~-~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..|+.|-.+....+-   ..+|.++...++..|. .-+.++.+|.+|+++|+|.+|+++++.+|+..|++..+.-.+..
T Consensus        40 ~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA~~Lk~~  119 (144)
T 1y8m_A           40 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  119 (144)
T ss_dssp             HHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence            4567888888887765   5799999999999884 46889999999999999999999999999999999877554443


Q ss_pred             H
Q 017264           79 A   79 (374)
Q Consensus        79 ~   79 (374)
                      +
T Consensus       120 I  120 (144)
T 1y8m_A          120 V  120 (144)
T ss_dssp             H
T ss_pred             H
Confidence            3

>2y1y_A Alpha-crystallin B chain,; small heat shock protein, chaperone, stress protein, eye LEN protein, cataract; HET: MSE; 2.00A {Homo sapiens} PDB: 2y22_A 2wj7_A 3l1g_A 2y1z_A

Probab=97.15  E-value=0.0011  Score=50.19  Aligned_cols=74  Identities=11%  Similarity=0.143  Sum_probs=58.3

Q ss_pred             ccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC---CC-----CeeeeccccccccccCceEEEE-cCcEEEEEEee
Q 017264          180 QKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP---GE-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEIRLAK  250 (374)
Q Consensus       180 Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~---~~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei~L~K  250 (374)
                      ++++.+.|.+-++|+.++++.|.+..+.|.|+....   ++     .+|.-.+.|...|+++..+.++ ....+.|+|.|
T Consensus         3 ~~~~~~~v~~dlPG~~~edi~V~v~~~~L~I~g~~~~~~~~~~~~~~ef~R~~~LP~~vd~~~i~A~~~~~GvL~I~~pK   82 (90)
T 2y1y_A            3 MEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSMSSDGVLTVNGPR   82 (90)
T ss_dssp             ---CCEEEEEECTTSCGGGEEEEEETTEEEEEEEEEEEECSSSEEEEEEEEEEECCTTBCGGGCEEEECTTSEEEEEECB
T ss_pred             cCCCEEEEEEECCCCcHHHeEEEEECCEEEEEEEEecccCCCCEEEEEEEEEEECCCCcChhHcEEEECCCCEEEEEEEc
Confidence            467889999999999999999999999999987431   11     1355677899999999999999 68899999998


Q ss_pred             cCC
Q 017264          251 AEP  253 (374)
Q Consensus       251 ~~~  253 (374)
                      ...
T Consensus        83 ~~~   85 (90)
T 2y1y_A           83 KQV   85 (90)
T ss_dssp             C--
T ss_pred             CCC
Confidence            653

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=97.10  E-value=0.0017  Score=54.53  Aligned_cols=78  Identities=18%  Similarity=0.090  Sum_probs=59.9

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCC---CC----------------------HHHHHHHHHHHHHccCHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISP---NS----------------------AELFADRAQASIKLQNFTEAV   56 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p---~~----------------------~~~~~~ra~~~~~l~~~~~Al   56 (374)
                      ++.+...|+.+|..++|..|+..|.+||.+..   .+                      .++.+.+|.||.+++++.+|+
T Consensus        63 ~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~~~~ss~p~s~~~~~e~Elkykia~C~~~l~~~~~Ai  142 (167)
T 3ffl_A           63 YQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPSTGNSASTPQSQCLPSEIEVKYKLAECYTVLKQDKDAI  142 (167)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC--------------------CCCCHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccccccCCCcccccccchHHHHHHHHHHHHHHCCHHHHH
Confidence            34678899999999999999999999987621   11                      278899999999999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH
Q 017264           57 ADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus        57 ~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..++.. -.....++..+-+|..|
T Consensus       143 ~~Le~I-p~k~Rt~kvnm~LakLy  165 (167)
T 3ffl_A          143 AILDGI-PSRQRTPKINMLLANLY  165 (167)
T ss_dssp             HHHHTS-CGGGCCHHHHHHHHHHC
T ss_pred             HHHhcC-CchhcCHHHHHHHHHHh
Confidence            976332 12235677777777665

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=97.01  E-value=0.0012  Score=64.71  Aligned_cols=96  Identities=14%  Similarity=0.049  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCC---------------------------CCHHHHHHHHHHHHHccCHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISP---------------------------NSAELFADRAQASIKLQNFTEAV   56 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p---------------------------~~~~~~~~ra~~~~~l~~~~~Al   56 (374)
                      .+...|..+++.|+|++|++.|.++.  ++                           .++.-+..+..+|.++|++++|+
T Consensus       150 n~~~LA~~L~~Lg~yq~AVea~~KA~--~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~~~ad~l~~lv~~Yek~G~~eEai  227 (449)
T 1b89_A          150 NFGRLASTLVHLGEYQAAVDGARKAN--STRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELI  227 (449)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHT--CHHHHHHHHHHHHHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             hHHHHHHHHHHhccHHHHHHHHHHcC--CchhHHHHHHHHHHcCcHHHHHHHHHHHHhCHhhHHHHHHHHHHCCCHHHHH
Confidence            35678999999999999999999982  22                           11222233447889999999999


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHH--HHhcCHHHHHHHHHHHHhcCC
Q 017264           57 ADANRAIELEPSMSKAYWRKATAC--MKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        57 ~~~~~al~l~p~~~~a~~~lg~~~--~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      ..++.++.+++.+...+..+|++|  |+.++..+++..|...+.+.+
T Consensus       228 ~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k  274 (449)
T 1b89_A          228 TMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPK  274 (449)
T ss_dssp             HHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHH
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcH
Confidence            999999999999999999999988  567888888888876655554

>2klr_A Alpha-crystallin B chain; protein, dimer, oligomer, heterogeneity, intermolecular INTE chaperone, SHSP, human, small heat-shock protein, cataract; NMR {Homo sapiens} PDB: 2ygd_A

Probab=96.91  E-value=0.002  Score=55.02  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=62.4

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC---C-----CeeeeccccccccccCceEEEE-cCcEEEE
Q 017264          176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG---E-----EAYHFQPRLFGKIIPAKCRYEV-LSTKVEI  246 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~---~-----~~y~~~~~L~~~I~p~~s~~~v-~~~kiei  246 (374)
                      .+++++++.+.|.+-++|+.+++|.|++.++.|.|+.....   +     .+|.-.+.|-..|+++..+.++ ....++|
T Consensus        66 ~dv~e~~d~~~v~~dlPG~~~edI~V~v~~~~L~I~g~~~~~~~~~~~~~reF~R~~~LP~~Vd~~~i~A~~s~dGvL~I  145 (175)
T 2klr_A           66 SEMRLEKDRFSVNLDVKHFSPEELKVKVLGDVIEVHGKHEERQDEHGFISREFHRKYRIPADVDPLTITSSLSSDGVLTV  145 (175)
T ss_dssp             ---CCCCSEEEEEECCSSCCGGGEEEEEETTEEEEEEEEEEEEETTEEEEEEEEEEEECTTTCCTTTCEEEECTTSCEEE
T ss_pred             eEEEEcCCeEEEEEECCCCChHHEEEEEECCEEEEEEEEcccccCCceEEEEEEEEEECCCCcChhHeEEEEcCCCEEEE
Confidence            48999999999999999999999999999999999874321   1     1255567899999999999999 5889999


Q ss_pred             EEeecCC
Q 017264          247 RLAKAEP  253 (374)
Q Consensus       247 ~L~K~~~  253 (374)
                      +|-|.+.
T Consensus       146 ~lPK~~~  152 (175)
T 2klr_A          146 NGPRKQV  152 (175)
T ss_dssp             EEECC--
T ss_pred             EEECCCC
Confidence            9999753

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.86  E-value=0.024  Score=46.83  Aligned_cols=101  Identities=17%  Similarity=-0.010  Sum_probs=83.8

Q ss_pred             HHHHHHHHHHhccCH------HHHHHHHHHHHHhCCCC--------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC
Q 017264            4 DLEKKAKEAFIDDYF------ELAYDLYSQAIEISPNS--------AELFADRAQASIKLQNFTEAVADANRAIELEPSM   69 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y------~~Al~~y~~aL~~~p~~--------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~   69 (374)
                      .++.-...+-+.|+.      +.-++.|.+|+..-|-.        ..++.+.|. +..+++.++|.+.|..++.++..+
T Consensus        15 ~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~-~~ei~D~d~aR~vy~~a~~~hKkF   93 (161)
T 4h7y_A           15 DWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAE-LKAIQEPDDARDYFQMARANCKKF   93 (161)
T ss_dssp             HHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHH-HHHHHCGGGCHHHHHHHHHHCTTB
T ss_pred             HHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHH-HHHhcCHHHHHHHHHHHHHHhHHH
Confidence            445556666666887      88889999999987654        345555553 356799999999999999998899


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChh
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +.+|+..|.--.+.|+...|...+.+++.+.|...+
T Consensus        94 AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~  129 (161)
T 4h7y_A           94 AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE  129 (161)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH
Confidence            999999999999999999999999999999997664

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.79  E-value=0.0093  Score=61.69  Aligned_cols=98  Identities=5%  Similarity=-0.003  Sum_probs=82.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEI-SPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~-~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +...++.....++.+.|..+|.+|++. .+....+|...|....+.++ ++.|...|+++++..|..+..|..++..+..
T Consensus       437 Wi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~  516 (679)
T 4e6h_A          437 YCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIY  516 (679)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHh
Confidence            344556666788999999999999987 44456777777777666654 8999999999999999999999899998899


Q ss_pred             hcCHHHHHHHHHHHHhcCCC
Q 017264           83 LEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~  102 (374)
                      .|+.+.|...|++++...|+
T Consensus       517 ~~~~~~AR~lferal~~~~~  536 (679)
T 4e6h_A          517 VNEESQVKSLFESSIDKISD  536 (679)
T ss_dssp             HTCHHHHHHHHHHHTTTSSS
T ss_pred             CCCHHHHHHHHHHHHHhcCC
Confidence            99999999999999998874

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=96.65  E-value=0.01  Score=61.45  Aligned_cols=106  Identities=7%  Similarity=0.022  Sum_probs=89.8

Q ss_pred             HHHHHHHhc-cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHH
Q 017264            7 KKAKEAFID-DYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS---MSKAYWRKATACMK   82 (374)
Q Consensus         7 ~~g~~~~~~-~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~---~~~a~~~lg~~~~~   82 (374)
                      ..|...+.. ++++.|..+|..+|+..|+++.++...+......|+.+.|...|++|+...|.   ....|..+...-..
T Consensus       474 ~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~  553 (679)
T 4e6h_A          474 ENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESK  553 (679)
T ss_dssp             HHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            334444444 45999999999999999999999988999888999999999999999999883   55677777777788


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKE  112 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~  112 (374)
                      .|+.+.+...+.++.+..|++..+.....+
T Consensus       554 ~G~~~~~~~v~~R~~~~~P~~~~~~~f~~r  583 (679)
T 4e6h_A          554 VGSLNSVRTLEKRFFEKFPEVNKLEEFTNK  583 (679)
T ss_dssp             TCCSHHHHHHHHHHHHHSTTCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCcHHHHHHHH
Confidence            999999999999999999999877666554

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=96.49  E-value=0.01  Score=55.33  Aligned_cols=79  Identities=15%  Similarity=0.108  Sum_probs=67.9

Q ss_pred             CccccccCC----eEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCC----C---CeeeeccccccccccCceEEEEc-Cc
Q 017264          175 RHEFYQKPE----EVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPG----E---EAYHFQPRLFGKIIPAKCRYEVL-ST  242 (374)
Q Consensus       175 r~~W~Qt~~----~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~----~---~~y~~~~~L~~~I~p~~s~~~v~-~~  242 (374)
                      ..|.|++++    .+.|++-++|+.+++|.|.+..+.|.|+.....    +   ..|.-.+.|...|+++..+.++. ..
T Consensus       100 ~vDi~E~~~dgk~~~~v~~dlPG~~~edI~V~v~~~~L~I~ge~~~~~e~~r~~g~F~R~~~LP~~Vd~e~i~A~~~~nG  179 (314)
T 2bol_A          100 LKDAYEVGKDGRLHFKVYFNVKNFKAEEITIKADKNKLVVRAQKSVACGDAAMSESVGRSIPLPPSVDRNHIQATITTDD  179 (314)
T ss_dssp             GGGCEEECTTSSEEEEEEEECTTCCTTTEEEEEETTEEEEEECCBSSTTCCCBCCCEEEEEECCTTBCGGGCEEEECSSS
T ss_pred             ccceEEcCCCCceEEEEEEECCCCchHHeEEEEECCEEEEEEEEeccCCCCEEEEEEEEEEECCCCccccccEEEEeCCC
Confidence            568889999    999999999999999999999999999875321    1   24677788999999999999999 88


Q ss_pred             EEEEEEeecCC
Q 017264          243 KVEIRLAKAEP  253 (374)
Q Consensus       243 kiei~L~K~~~  253 (374)
                      .+.|+|.|.++
T Consensus       180 VL~I~lPK~~~  190 (314)
T 2bol_A          180 VLVIEAPVNEP  190 (314)
T ss_dssp             EEEEEEEBSSC
T ss_pred             EEEEEEeccCc
Confidence            99999999865

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=96.03  E-value=0.016  Score=60.42  Aligned_cols=80  Identities=18%  Similarity=0.247  Sum_probs=64.5

Q ss_pred             HHHHHHHHHHHHHh--------CCCC----------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Q 017264           18 FELAYDLYSQAIEI--------SPNS----------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATA   79 (374)
Q Consensus        18 y~~Al~~y~~aL~~--------~p~~----------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~   79 (374)
                      --+|+.+..++|+.        .+.+          ..++..-+..++..|+|+-|+..+.+|+.+.|.....|++|+.+
T Consensus       301 Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~v  380 (754)
T 4gns_B          301 ELDMITILNETLDPLLSLLNDLPPRDADSARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARC  380 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHhhhhhhhhcccccccccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHH
Confidence            34577777777642        1222          23455557777788999999999999999999999999999999


Q ss_pred             HHHhcCHHHHHHHHHHHH
Q 017264           80 CMKLEEYETAKVALEKGA   97 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~   97 (374)
                      |..+|+|+.|+-.+..+-
T Consensus       381 Yi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          381 HIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccHHHHHHHHhcCC
Confidence            999999999998888763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=95.94  E-value=0.12  Score=51.24  Aligned_cols=100  Identities=11%  Similarity=-0.101  Sum_probs=65.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH---------------------------------------
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQA---------------------------------------   45 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~---------------------------------------   45 (374)
                      ++..+..+...|+.+.|...|.+|+.. |.+..+++..+..                                       
T Consensus       216 W~~ya~~~~~~~~~~~ar~i~erAi~~-P~~~~l~~~y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~  294 (493)
T 2uy1_A          216 YFFYSEYLIGIGQKEKAKKVVERGIEM-SDGMFLSLYYGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLN  294 (493)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH-CCSSHHHHHHHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhC-CCcHHHHHHHHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHH
Confidence            455666677778888888888888888 7774433332221                                       


Q ss_pred             -HHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc-CHHHHHHHHHHHHhcCCCChhH
Q 017264           46 -SIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE-EYETAKVALEKGASLAPGDSRF  106 (374)
Q Consensus        46 -~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg-~~~eA~~~~~~a~~l~p~~~~~  106 (374)
                       +.+.+..+.|...|.+| ...+.....|...|.+.+..+ +++.|...|+.+++..|+++.+
T Consensus       295 ~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~  356 (493)
T 2uy1_A          295 YVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLL  356 (493)
T ss_dssp             HHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHH
Confidence             22345667777777777 333334566666677666666 4788888888888777776654

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=95.67  E-value=0.16  Score=45.97  Aligned_cols=63  Identities=24%  Similarity=0.233  Sum_probs=58.8

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHH
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSK   71 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~   71 (374)
                      ...+++.++.++|+..+...|+.+|.++..+..+...++-.|++++|+..+..+.+++|....
T Consensus         4 ~~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~   66 (273)
T 1zbp_A            4 WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLP   66 (273)
T ss_dssp             HHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHH
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhH
Confidence            457889999999999999999999999999999999999999999999999999999997644

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=94.88  E-value=0.38  Score=47.53  Aligned_cols=90  Identities=9%  Similarity=-0.021  Sum_probs=74.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      ...+..+...++.+.|...|.+| ...+.....|...|......+ +++.|...|+.++...|+.+..+..++......|
T Consensus       290 ~~y~~~~~r~~~~~~AR~i~~~A-~~~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~  368 (493)
T 2uy1_A          290 INHLNYVLKKRGLELFRKLFIEL-GNEGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIG  368 (493)
T ss_dssp             HHHHHHHHHHHCHHHHHHHHHHH-TTSCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHh-hCCCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcC
Confidence            34455555678899999999999 433345677777777777776 5999999999999999999998888888889999


Q ss_pred             CHHHHHHHHHHH
Q 017264           85 EYETAKVALEKG   96 (374)
Q Consensus        85 ~~~eA~~~~~~a   96 (374)
                      +.+.|...|+++
T Consensus       369 ~~~~aR~l~er~  380 (493)
T 2uy1_A          369 DEENARALFKRL  380 (493)
T ss_dssp             CHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHH
Confidence            999999999987

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=94.78  E-value=0.28  Score=47.12  Aligned_cols=93  Identities=13%  Similarity=0.005  Sum_probs=74.6

Q ss_pred             HHHHHHHhccCHHHHHHHHHHHHHhCCC------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC---C----CHHHH
Q 017264            7 KKAKEAFIDDYFELAYDLYSQAIEISPN------SAELFADRAQASIKLQNFTEAVADANRAIELEP---S----MSKAY   73 (374)
Q Consensus         7 ~~g~~~~~~~~y~~Al~~y~~aL~~~p~------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p---~----~~~a~   73 (374)
                      ..|..++..|+|.+|+.++++.++....      ..+.+......|..++++..+...+..|.....   .    .+...
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            6899999999999999999998886222      146777888999999999999999988876541   2    23445


Q ss_pred             HHHHHHHH-HhcCHHHHHHHHHHHHhc
Q 017264           74 WRKATACM-KLEEYETAKVALEKGASL   99 (374)
Q Consensus        74 ~~lg~~~~-~lg~~~eA~~~~~~a~~l   99 (374)
                      ..-|.++. ..++|..|..+|-.+++.
T Consensus       184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~  210 (394)
T 3txn_A          184 LQSGILHAADERDFKTAFSYFYEAFEG  210 (394)
T ss_dssp             HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence            55688888 899999999999888743

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.70  E-value=0.091  Score=54.71  Aligned_cols=54  Identities=20%  Similarity=0.268  Sum_probs=50.6

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVAD   58 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~   58 (374)
                      |..++..+...|+|+-|+.+..+|+...|.....|+.+|.||..+|+|+.|+-.
T Consensus       340 L~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLt  393 (754)
T 4gns_B          340 LNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFA  393 (754)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHH
Confidence            556889999999999999999999999999999999999999999999999854

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=94.58  E-value=0.71  Score=38.86  Aligned_cols=92  Identities=10%  Similarity=-0.003  Sum_probs=70.6

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh-----------------CCCCH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL-----------------EPSMS   70 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l-----------------~p~~~   70 (374)
                      .+-.++-.|.|..|+-++..     -+.....+..+.||.++++|..|+..++..+.-                 +|.+-
T Consensus        39 ~~I~LyyngEY~R~Lf~L~~-----lNT~Ts~YYk~LCy~klKdYkkA~~~le~il~~kvd~d~~~d~~~~~ffvd~~Dk  113 (242)
T 3kae_A           39 MSIVLYLNGEYTRALFHLHK-----LNTCTSKYYESLCYKKKKDYKKAIKSLESILEGKVERDPDVDARIQEMFVDPGDE  113 (242)
T ss_dssp             HHHHHHHTTCHHHHHHHHHT-----CCBHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHHHHTTSCCTTCH
T ss_pred             hhhhhhhcchHhHHHHHHHh-----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCcccccccceeeeccchH
Confidence            45567778888888877643     466788888899999999999999999988832                 23444


Q ss_pred             HHHH-HHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           71 KAYW-RKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        71 ~a~~-~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      +.++ .+|.++-..|+.++|+..|.......+--+
T Consensus       114 EfFy~l~a~lltq~g~r~EaI~y~~~Sf~~~~lf~  148 (242)
T 3kae_A          114 EFFESLLGDLCTLSGYREEGIGHYVRSFGKSFLFS  148 (242)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHHHHHhcCHHHhhhHhhhhcCCccccc
Confidence            4444 479999999999999999998887776433

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=94.48  E-value=0.27  Score=48.73  Aligned_cols=80  Identities=10%  Similarity=0.001  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+..+|....-...+..|..+|.+|+.+.|+++..|..+|++....|+.-+|+.+|.+++-.....+.....+..+-.+.
T Consensus       154 ~l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~~  233 (497)
T 1ya0_A          154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSKA  233 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Confidence            34455666666677889999999999999999999999999999999999999999999877666676777776665544

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=94.31  E-value=0.77  Score=45.43  Aligned_cols=101  Identities=13%  Similarity=0.064  Sum_probs=79.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEPS-MSKAYWRKATACMK   82 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-~~~a~~~lg~~~~~   82 (374)
                      +...-..+.+.|++++|+.+|.+..... .-+...|..+-.+|.+.|++++|...++.....+-. +...|..+-.+|.+
T Consensus       108 yn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~  187 (501)
T 4g26_A          108 FTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMD  187 (501)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhh
Confidence            3345567889999999999999877752 234777888888999999999999999998876532 45567778889999


Q ss_pred             hcCHHHHHHHHHHHHh--cCCCChh
Q 017264           83 LEEYETAKVALEKGAS--LAPGDSR  105 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~--l~p~~~~  105 (374)
                      .|+.++|...|++..+  ..|+...
T Consensus       188 ~g~~d~A~~ll~~Mr~~g~~ps~~T  212 (501)
T 4g26_A          188 TKNADKVYKTLQRLRDLVRQVSKST  212 (501)
T ss_dssp             TTCHHHHHHHHHHHHHHTSSBCHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCcCHHH
Confidence            9999999999998765  3455443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=93.73  E-value=0.33  Score=47.10  Aligned_cols=97  Identities=5%  Similarity=-0.052  Sum_probs=77.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC--CC----HHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPN---SAELFADRAQASIKLQNFTEAVADANRAIELEP--SM----SKAYWR   75 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~---~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p--~~----~~a~~~   75 (374)
                      +...|..++..|+++.|++.|.++......   -..++.....+++..+++..+...+.++-.+..  .+    ......
T Consensus       134 ~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~~  213 (429)
T 4b4t_R          134 WINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKTY  213 (429)
T ss_dssp             CHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHHH
Confidence            467899999999999999999998887433   367888888888899999999999999876532  22    234445


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           76 KATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      .|.++...++|.+|...|-.++....
T Consensus       214 ~gl~~l~~r~f~~Aa~~f~e~~~t~~  239 (429)
T 4b4t_R          214 YGIHCLAVRNFKEAAKLLVDSLATFT  239 (429)
T ss_dssp             HHHGGGGTSCHHHHHHHHHHHHHHSC
T ss_pred             HHHHHHHhChHHHHHHHHHHHhccCC
Confidence            68888899999999998888765443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=93.43  E-value=0.31  Score=44.11  Aligned_cols=65  Identities=14%  Similarity=0.027  Sum_probs=59.3

Q ss_pred             HHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHH
Q 017264           45 ASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNL  109 (374)
Q Consensus        45 ~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~  109 (374)
                      .+++.+++.+|++.+...++.+|.+......+.+.|+-.|+++.|...++.+.+++|+.......
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~   70 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQ   70 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999987765434

>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1

Probab=93.15  E-value=0.42  Score=47.36  Aligned_cols=78  Identities=15%  Similarity=0.090  Sum_probs=67.9

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +...|+..--...+..|..+|.+|+.+.|.+...|..+|.++...|+.-+|+-+|-+++....-++.+.-++...+-.
T Consensus       155 l~~LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~rsl~~~~Pf~~a~~nL~~~f~~  232 (497)
T 1ya0_A          155 LVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHcccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Confidence            567788888888899999999999999999999999999999999999999999999997766677777777666653

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.67  E-value=0.45  Score=45.47  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=54.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIE   64 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~   64 (374)
                      +...+..+...|++.+|+..+..++..+|.+-.++..+..+|++.|+..+|+..|+++-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~  233 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKT  233 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            445677888999999999999999999999999999999999999999999999987654

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=92.04  E-value=1  Score=37.09  Aligned_cols=73  Identities=16%  Similarity=0.012  Sum_probs=60.1

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      .+...+|.+.|.+.|+.++......+.++...|..-.+.|+...|...+.+|+.+.|.... .+..|+.-.+.|
T Consensus        69 ~~~ei~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~-~le~a~~nl~~~  141 (161)
T 4h7y_A           69 ELKAIQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLE-MLEIALRNLNLQ  141 (161)
T ss_dssp             HHHHHHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHH-HHHHHHHHHHTT
T ss_pred             HHHHhcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHH-HHHHHHHhhhcC
Confidence            3356689999999999999998888999999999999999999999999999999998654 344444444444

>2bol_A TSP36, small heat shock protein; A-crystallin, molecular chaperone; 2.5A {Taenia saginata}

Probab=91.36  E-value=0.6  Score=43.30  Aligned_cols=71  Identities=10%  Similarity=-0.027  Sum_probs=57.3

Q ss_pred             cCCeEEEEEEe-CCCCCCceEEEEeeeEEEEEEEcCCC-----------CeeeeccccccccccCceEEEEcCcEEEEEE
Q 017264          181 KPEEVVVTVFA-KGIPAKNVTVDFGEQILSVSIDVPGE-----------EAYHFQPRLFGKIIPAKCRYEVLSTKVEIRL  248 (374)
Q Consensus       181 t~~~V~i~i~~-k~~~~~~v~v~~~~~~l~v~~~~~~~-----------~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L  248 (374)
                      +++.+.|.+.+ +|+.+++|.|++..+.|+|+......           ..|.=.+.|-..|+++..+.+.....+.|+|
T Consensus       231 ~~~~~~v~~~ldPG~~~edi~V~v~~~~LtI~ge~~~~~~~~~~~Er~~g~F~R~~~LP~~vd~~~i~A~~~dGvL~i~~  310 (314)
T 2bol_A          231 GSKKIHLELKVDPHFAPKDVKVWAKGNKVYVHGVTGKEEKTENASHSEHREFYKAFVTPEVVDASKTQAEIVDGLMVVEA  310 (314)
T ss_dssp             SCEEEEEEEECCTTCCGGGEEEEESSSEEEEEEEEC------------CEEEEEEEECSSEECGGGCEEEEETTEEEEEE
T ss_pred             CCcEEEEEEEcCCCCChHHeEEEEECCEEEEEEEEeccCCceEEEEEeeeEEEEEEECCCCcChHHeEEEEeCCEEEEEE
Confidence            55678888888 99999999999999999998753211           1244567899999999999999888999998


Q ss_pred             eec
Q 017264          249 AKA  251 (374)
Q Consensus       249 ~K~  251 (374)
                      -|.
T Consensus       311 Pk~  313 (314)
T 2bol_A          311 PLF  313 (314)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            774

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=91.01  E-value=3.5  Score=40.01  Aligned_cols=94  Identities=11%  Similarity=0.086  Sum_probs=73.4

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCC--CC----HHHHHHHHHHHHHccCHHHHHHHHHHHHH---hCCCC----HHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISP--NS----AELFADRAQASIKLQNFTEAVADANRAIE---LEPSM----SKA   72 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p--~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~---l~p~~----~~a   72 (374)
                      ...+..++..|+|.+|...+.......-  .+    .+++......|+..+++..|...+.++..   -.+..    ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            5678999999999999999988765421  11    46777788889999999999999988742   22333    345


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhc
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASL   99 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l   99 (374)
                      +...|..+...++|.+|..+|..++..
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~  247 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQT  247 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            566788999999999999999988754

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=90.55  E-value=3.4  Score=40.68  Aligned_cols=92  Identities=10%  Similarity=0.091  Sum_probs=72.2

Q ss_pred             ccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCHHHHHHH
Q 017264           15 DDYFELAYDLYSQAIEIS-PNSAELFADRAQASIKLQNFTEAVADANRAIELEP-SMSKAYWRKATACMKLEEYETAKVA   92 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~-p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p-~~~~a~~~lg~~~~~lg~~~eA~~~   92 (374)
                      .++.+.|.++|.+..... .-+...|..+..+|.+.|++++|+..++.....+- -+...|-.+-.+|.+.|+.++|...
T Consensus        83 ~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l  162 (501)
T 4g26_A           83 NPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEV  162 (501)
T ss_dssp             CHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHH
Confidence            345788999999877652 23477889999999999999999999999887642 2456677788889999999999999


Q ss_pred             HHHHHhc--CCCChhH
Q 017264           93 LEKGASL--APGDSRF  106 (374)
Q Consensus        93 ~~~a~~l--~p~~~~~  106 (374)
                      |....+.  .|+...+
T Consensus       163 ~~~M~~~G~~Pd~~ty  178 (501)
T 4g26_A          163 DAHMVESEVVPEEPEL  178 (501)
T ss_dssp             HHHHHHTTCCCCHHHH
T ss_pred             HHHHHhcCCCCCHHHH
Confidence            9987754  4554443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=89.03  E-value=2.5  Score=43.35  Aligned_cols=83  Identities=19%  Similarity=0.086  Sum_probs=52.5

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH--------HhCCCCHHHHHHH----
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI--------ELEPSMSKAYWRK----   76 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al--------~l~p~~~~a~~~l----   76 (374)
                      ...++..|+++.|++.+.     .-.+...+..+|..+.+.++++.|+..|.++-        .....+.+.+.++    
T Consensus       659 f~~~l~~~~~~~A~~~~~-----~~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a  733 (814)
T 3mkq_A          659 FELALKVGQLTLARDLLT-----DESAEMKWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDA  733 (814)
T ss_dssp             HHHHHHHTCHHHHHHHHT-----TCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             eehhhhcCCHHHHHHHHH-----hhCcHhHHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHH
Confidence            344555666666666642     34567889999999999999999999887641        1112333333333    


Q ss_pred             ---------HHHHHHhcCHHHHHHHHHHH
Q 017264           77 ---------ATACMKLEEYETAKVALEKG   96 (374)
Q Consensus        77 ---------g~~~~~lg~~~eA~~~~~~a   96 (374)
                               ..+++.+|++++|++.|..+
T Consensus       734 ~~~~~~~~A~~~~~~~g~~~~a~~~~~~~  762 (814)
T 3mkq_A          734 ETTGKFNLAFNAYWIAGDIQGAKDLLIKS  762 (814)
T ss_dssp             HHTTCHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred             HHcCchHHHHHHHHHcCCHHHHHHHHHHc
Confidence                     23455577777777777653

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=89.01  E-value=1.5  Score=48.03  Aligned_cols=92  Identities=10%  Similarity=-0.031  Sum_probs=73.1

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHh-----------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEI-----------------------SPNSAELFADRAQASIKLQNFTEAVADANRA   62 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~-----------------------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~a   62 (374)
                      +-+|..++..|++++|..+|.+|-.-                       ....+.+|......+.+.+.++.+++.+..|
T Consensus       846 yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lA  925 (1139)
T 4fhn_B          846 YLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLA  925 (1139)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            67899999999999999999876321                       0112456777788888899999999999999


Q ss_pred             HHhCCC-CH----HHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           63 IELEPS-MS----KAYWRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        63 l~l~p~-~~----~a~~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      ++..+. ..    ..|.++..++..+|+|++|..++...-
T Consensus       926 i~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~p  965 (1139)
T 4fhn_B          926 DASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLS  965 (1139)
T ss_dssp             HHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHH
T ss_pred             HHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCC
Confidence            987653 32    267889999999999999988886543

>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}

Probab=88.44  E-value=5  Score=33.77  Aligned_cols=86  Identities=16%  Similarity=0.064  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+...-...++=.+|+.++-+-.-   +-|..++....++..++-.|.|.+|+-.+     ..-+...+.+..+.||..+
T Consensus         4 ~~~~kI~Ks~kY~dYdt~~fLsa~---L~~~~~eY~lL~~I~LyyngEY~R~Lf~L-----~~lNT~Ts~YYk~LCy~kl   75 (242)
T 3kae_A            4 KLIGKICKSIRYRDYETAIFLAAC---LLPCKPEYRMLMSIVLYLNGEYTRALFHL-----HKLNTCTSKYYESLCYKKK   75 (242)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHH---HC----CTHHHHHHHHHHTTCHHHHHHHH-----HTCCBHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhhcccccHHHHHHHH---HccCChHHHhhhhhhhhhcchHhHHHHHH-----HhcchHHHHHHHHHHHHHH
Confidence            344445566778889888754332   23555577777888999999999887633     4456778899999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGA   97 (374)
Q Consensus        84 g~~~eA~~~~~~a~   97 (374)
                      ++|..|+.+++..+
T Consensus        76 KdYkkA~~~le~il   89 (242)
T 3kae_A           76 KDYKKAIKSLESIL   89 (242)
T ss_dssp             TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999999988

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=87.02  E-value=3.4  Score=34.84  Aligned_cols=87  Identities=9%  Similarity=-0.013  Sum_probs=60.2

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--------CCCHHHHH---
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE--------PSMSKAYW---   74 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--------p~~~~a~~---   74 (374)
                      ..+-..+.+.|+++.|++.....     ++...|..+|...+..|++.-|...|.++=..+        -++.+.+-   
T Consensus         9 ~~rF~LAL~lg~l~~A~e~a~~l-----~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla   83 (177)
T 3mkq_B            9 HIRFDLALEYGNLDAALDEAKKL-----NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQ   83 (177)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH-----CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHhcCCHHHHHHHHHHh-----CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHH
Confidence            45667788999999999987654     567889999999999999888888776432111        12222222   


Q ss_pred             ----------HHHHHHHHhcCHHHHHHHHHHHH
Q 017264           75 ----------RKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        75 ----------~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                                ....+++.+|++++++..|.+.-
T Consensus        84 ~iA~~~g~~n~af~~~l~lGdv~~~i~lL~~~~  116 (177)
T 3mkq_B           84 NIAQTREDFGSMLLNTFYNNSTKERSSIFAEGG  116 (177)
T ss_dssp             HHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred             HHHHHCccHHHHHHHHHHcCCHHHHHHHHHHCC
Confidence                      23556677888888888877643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=85.11  E-value=9.5  Score=38.91  Aligned_cols=89  Identities=16%  Similarity=0.087  Sum_probs=55.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHH--------hCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIE--------ISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~--------~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      .+...|..+.+.++++.|+..|.++=.        ....+...+..++......|++..|...|.+   ++  +   +-.
T Consensus       683 ~W~~la~~al~~~~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~---~g--~---~~~  754 (814)
T 3mkq_A          683 KWRALGDASLQRFNFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWI---AG--D---IQG  754 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHH---HT--C---HHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHH---cC--C---HHH
Confidence            457899999999999999999988511        1223334444455555555555555443322   11  1   122


Q ss_pred             HHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           76 KATACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      .-.+|..++++++|+...++   +.|..
T Consensus       755 a~~~~~~~~~~~~A~~lA~~---~~~~~  779 (814)
T 3mkq_A          755 AKDLLIKSQRFSEAAFLGST---YGLGD  779 (814)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH---TTCCH
T ss_pred             HHHHHHHcCChHHHHHHHHH---hCCCh
Confidence            34568899999999886664   55554

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=84.22  E-value=16  Score=39.30  Aligned_cols=95  Identities=15%  Similarity=0.042  Sum_probs=74.1

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHh----CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEI----SPNSAELFADRAQASIKLQNFTEAVADANRAIELE--PSMSKAYWRKAT   78 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~----~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~--p~~~~a~~~lg~   78 (374)
                      +...-+.+.+.|+.++|..+|.+.-+.    ..-+...|..+-..|.+.|++++|+..|+.....+  | +.-.|-.+-.
T Consensus       130 ynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~P-DvvTYntLI~  208 (1134)
T 3spa_A          130 LLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTP-DLLSYAAALQ  208 (1134)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHH
Confidence            455667899999999999999764422    23447889999999999999999999999998765  4 4445666666


Q ss_pred             HHHHhcC-HHHHHHHHHHHHhcC
Q 017264           79 ACMKLEE-YETAKVALEKGASLA  100 (374)
Q Consensus        79 ~~~~lg~-~~eA~~~~~~a~~l~  100 (374)
                      ++.+.|+ .++|...|+......
T Consensus       209 glcK~G~~~e~A~~Ll~EM~~kG  231 (1134)
T 3spa_A          209 CMGRQDQDAGTIERCLEQMSQEG  231 (1134)
T ss_dssp             HHHHHTCCHHHHHHHHHHHHHHT
T ss_pred             HHHhCCCcHHHHHHHHHHHHHcC
Confidence            8888888 478888998876543

>2w2u_A Hypothetical P60 katanin; hydrolase transport complex, nucleotide-binding, ESCRT, AAA-ATPase, cytokinesis, ATP-binding; 2.20A {Sulfolobus acidocaldarius}

Probab=83.72  E-value=4.3  Score=29.58  Aligned_cols=29  Identities=28%  Similarity=0.206  Sum_probs=17.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      ..+..+|..+-+.|+|++|+.+|.++|+.
T Consensus        20 i~lv~~Ave~D~~g~y~eAl~lY~~aie~   48 (83)
T 2w2u_A           20 RKYAINAVKADKEGNAEEAITNYKKAIEV   48 (83)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            34556666666666666666666666553

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=83.58  E-value=9.1  Score=32.17  Aligned_cols=84  Identities=15%  Similarity=0.067  Sum_probs=53.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHH--HH------H
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKA--YW------R   75 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a--~~------~   75 (374)
                      .+...|..++..|+++-|...|.++     .+   +..+...|.-.|+.+.-....+.|...+..+...  ++      .
T Consensus        36 ~Wk~Lg~~AL~~gn~~lAe~cy~~~-----~D---~~~L~~Ly~~tg~~e~L~kla~iA~~~g~~n~af~~~l~lGdv~~  107 (177)
T 3mkq_B           36 TWERLIQEALAQGNASLAEMIYQTQ-----HS---FDKLSFLYLVTGDVNKLSKMQNIAQTREDFGSMLLNTFYNNSTKE  107 (177)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHT-----TC---HHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHh-----CC---HHHHHHHHHHhCCHHHHHHHHHHHHHCccHHHHHHHHHHcCCHHH
Confidence            4788999999999999999999884     33   2333344555566555444444444433322211  11      2


Q ss_pred             HHHHHHHhcCHHHHHHHHHH
Q 017264           76 KATACMKLEEYETAKVALEK   95 (374)
Q Consensus        76 lg~~~~~lg~~~eA~~~~~~   95 (374)
                      +..+|...|++.+|....+.
T Consensus       108 ~i~lL~~~~r~~eA~~~A~t  127 (177)
T 3mkq_B          108 RSSIFAEGGSLPLAYAVAKA  127 (177)
T ss_dssp             HHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCChHHHHHHHHH
Confidence            35668889999999876654

>2v6y_A AAA family ATPase, P60 katanin; MIT, VPS4, archaea, AAA-ATPase, ATP-binding, microtubule INT and trafficking domain, nucleotide-binding; HET: SRT; 2.40A {Sulfolobus solfataricus} PDB: 2v6y_B*

Probab=83.39  E-value=4.6  Score=29.37  Aligned_cols=28  Identities=29%  Similarity=0.223  Sum_probs=16.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      .+..+|..+=+.|+|++|+.+|.++|+.
T Consensus        13 ~lv~~Ave~D~~g~y~eAl~lY~~aie~   40 (83)
T 2v6y_A           13 KYAILAVKADKEGKVEDAITYYKKAIEV   40 (83)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            4555666666666666666666665553

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=83.25  E-value=7.7  Score=31.46  Aligned_cols=53  Identities=13%  Similarity=0.041  Sum_probs=26.8

Q ss_pred             HhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264           13 FIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus        13 ~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      ..+|.-++--+.+...+.-.+-++.+++.+|.+|.++|+..+|-+.+.+|++.
T Consensus       102 v~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~k  154 (172)
T 1wy6_A          102 VIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKK  154 (172)
T ss_dssp             HHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence            34444444444444444444444555555555555555555555555555543

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=81.22  E-value=18  Score=34.36  Aligned_cols=74  Identities=12%  Similarity=0.059  Sum_probs=54.6

Q ss_pred             HHHHHHHHccCHHHHHHHHHHHHHhCC------CCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC---CCChhHHHHHH
Q 017264           41 DRAQASIKLQNFTEAVADANRAIELEP------SMSKAYWRKATACMKLEEYETAKVALEKGASLA---PGDSRFTNLIK  111 (374)
Q Consensus        41 ~ra~~~~~l~~~~~Al~~~~~al~l~p------~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~---p~~~~~~~~~~  111 (374)
                      ++|..|+..|+|.+|+..+.+++.--.      ...+.+..-..+|+.++++..+...|.++....   +.++.+...+.
T Consensus       104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~  183 (394)
T 3txn_A          104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD  183 (394)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence            688899999999999998888886422      235677778889999999999999999887553   23454444444


Q ss_pred             HHH
Q 017264          112 ECE  114 (374)
Q Consensus       112 ~~~  114 (374)
                      .|.
T Consensus       184 ~~~  186 (394)
T 3txn_A          184 LQS  186 (394)
T ss_dssp             HHH
T ss_pred             HHh
Confidence            443

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d1rl1a_	92	b.15.1.3 (A:) Suppressor of G2 allele of skp1 homo	4e-25
d1wh0a_	134	b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolas	9e-25
d1ejfa_	110	b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapien	9e-12
d1wgva_	124	b.15.1.4 (A:) NudC domain containing protein 3, NU	8e-11
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-08
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-07
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	2e-05
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	3e-09
d2c2la1	201	a.118.8.1 (A:24-224) STIP1 homology and U box-cont	6e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	1e-05
d2h6fa1	315	a.118.6.1 (A:55-369) Protein farnesyltransferase a	9e-04
d1dcea1	334	a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltr	3e-05
d1hz4a_	366	a.118.8.2 (A:) Transcription factor MalT domain II	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	2e-04
d1fcha_	323	a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting	0.002
d2pqrb1	124	a.118.8.1 (B:5-128) Mitochondria fission protein F	4e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	9e-04
d1ya0a1	497	a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [T	0.002
d1xnfa_	259	a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli	0.002

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.4 bits (237), Expect = 4e-25
 Identities = 33/88 (37%), Positives = 55/88 (62%)

Query: 173 KYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
           K ++++YQ   +VV+T+  K +   +V V+F E+ LS  + +P  E Y+ +  L   IIP
Sbjct: 2   KIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIP 61

Query: 233 AKCRYEVLSTKVEIRLAKAEPIQWSSLE 260
            +  ++VLSTK+EI+L K E ++W  LE
Sbjct: 62  EQSTFKVLSTKIEIKLKKPEAVRWEKLE 89

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]} Length = 134

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 95.8 bits (238), Expect = 9e-25
 Identities = 24/112 (21%), Positives = 46/112 (41%), Gaps = 13/112 (11%)

Query: 163 EAAMAAPARPKYRHEFYQK-PEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP------ 215
           +   +       +++ Y+K P+ VVV V+ K I      V F EQ  ++           
Sbjct: 9   DEPESMVNLAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLR 68

Query: 216 ------GEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEPIQWSSLEF 261
                     + +Q +L   I P +C +   +++++I L K +  +W  LE 
Sbjct: 69  LHPGCGPHTTFRWQVKLRNLIEPEQCTFCFTASRIDICLRKRQSQRWGGLEA 120

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 59.3 bits (143), Expect = 9e-12
 Identities = 16/119 (13%), Positives = 33/119 (27%), Gaps = 23/119 (19%)

Query: 179 YQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYE 238
           Y + + V +    +     NV  +  +   S        + +  +  LF  I P   +++
Sbjct: 9   YDRRDYVFIEFCVEDSKDVNVNFEKSKLTFSCLGGSDNFK-HLNEIDLFHCIDPNDSKHK 67

Query: 239 VLSTKVEIRLAKAEP-IQWSSLEFSKGAVVPQRVNPPSVSGSPRPTYPSSKPTRVDWDK 296
                +   L K E    W  L                     +  +       VD++ 
Sbjct: 68  RTDRSILCCLRKGESGQSWPRL----------------TKERAKLNW-----LSVDFNN 105

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.9 bits (137), Expect = 8e-11
 Identities = 15/88 (17%), Positives = 33/88 (37%), Gaps = 3/88 (3%)

Query: 175 RHEFYQKPEEVVVTV--FAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIP 232
            + + Q   ++ V V      +  K V+V      + V++     E    + +L  KI  
Sbjct: 21  NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINT 80

Query: 233 AKCRYEVLSTKVEI-RLAKAEPIQWSSL 259
               + +   K  +  L+K     W+++
Sbjct: 81  ESSLWSLEPGKCVLVNLSKVGEYWWNAI 108

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 16/67 (23%), Positives = 29/67 (43%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
            E A  LY +A+E+ P  A   ++ A    +     EA+     AI + P+ + AY    
Sbjct: 321 IEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMG 380

Query: 78  TACMKLE 84
               +++
Sbjct: 381 NTLKEMQ 387

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.0 bits (136), Expect = 1e-09
 Identities = 11/75 (14%), Positives = 25/75 (33%)

Query: 7  KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
          + A   +    FE A     Q     P++  +    +    + +    +   +  AI+  
Sbjct: 4  ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 67 PSMSKAYWRKATACM 81
          P +++AY        
Sbjct: 64 PLLAEAYSNLGNVYK 78

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.5 bits (127), Expect = 2e-08
 Identities = 18/104 (17%), Positives = 34/104 (32%)

Query: 1   MATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADAN 60
            A                 LA   + +A+ + PN  + + +      + + F  AVA   
Sbjct: 168 FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYL 227

Query: 61  RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           RA+ L P+ +  +   A    +    + A     +   L P   
Sbjct: 228 RALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFP 271

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 2e-08
 Identities = 18/84 (21%), Positives = 39/84 (46%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
           A D Y+ A+ + P  A+   + A    +  N  EAV    +A+E+ P  + A+   A+  
Sbjct: 290 AEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVL 349

Query: 81  MKLEEYETAKVALEKGASLAPGDS 104
            +  + + A +  ++   ++P  +
Sbjct: 350 QQQGKLQEALMHYKEAIRISPTFA 373

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 50.1 bits (118), Expect = 2e-07
 Identities = 31/126 (24%), Positives = 49/126 (38%), Gaps = 2/126 (1%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           F+ A   Y +A+ +SPN A +  + A    +      A+    RAIEL+P    AY   A
Sbjct: 219 FDRAVAAYLRALSLSPNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPHFPDAYCNLA 278

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIA--EETGELQKQPLETGPTN 135
            A  +      A+        L P  +   N +   +      EE   L ++ LE  P  
Sbjct: 279 NALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEF 338

Query: 136 VVSTNN 141
             + +N
Sbjct: 339 AAAHSN 344

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 41  DRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLA 100
           + A    +  +F  A     +    EP  +      ++   +    + +           
Sbjct: 4   ELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN 63

Query: 101 PGDSR 105
           P  + 
Sbjct: 64  PLLAE 68

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 53.8 bits (128), Expect = 3e-09
 Identities = 29/100 (29%), Positives = 53/100 (53%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
           A +L+++    F+   +  A   Y +AI  +P  A  + +RA   +K+Q   +A+AD  R
Sbjct: 4   AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRR 63

Query: 62  AIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           A+EL+    KA++      +++E Y+ A   L++  SLA 
Sbjct: 64  ALELDGQSVKAHFFLGQCQLEMESYDEAIANLQRAYSLAK 103

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} Length = 201

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 38.4 bits (88), Expect = 6e-04
 Identities = 10/107 (9%), Positives = 30/107 (28%), Gaps = 5/107 (4%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
           ++ A     +A  ++      F D   +++++            +IE      ++     
Sbjct: 88  YDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAKKKRW-----NSIEERRIHQESELHSY 142

Query: 78  TACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEETGEL 124
              +   E E      ++       D          E +  +   ++
Sbjct: 143 LTRLIAAERERELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADM 189

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 49.3 bits (117), Expect = 2e-07
 Identities = 16/93 (17%), Positives = 30/93 (32%)

Query: 9   AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPS 68
            K A  +   + A +L  +AI+ SP  A L +   +      +F  A     ++I+L P 
Sbjct: 3   WKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPE 62

Query: 69  MSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
                 +        +  +           L  
Sbjct: 63  YLPGASQLRHLVKAAQARKDFAQGAATAKVLGE 95

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 17/135 (12%), Positives = 41/135 (30%), Gaps = 7/135 (5%)

Query: 42  RAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAP 101
           + + ++      +A+     AI+  P  +              ++E A   L +   L P
Sbjct: 2   QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFP 61

Query: 102 GDSRFT----NLIKECEERIAEETGELQKQPLETGPTNVVSTNNVQPATNISSTEDVETV 157
                     +L+K  + R     G    + L           ++        ++D E V
Sbjct: 62  EYLPGASQLRHLVKAAQARKDFAQGAATAKVLGENEELT---KSLVSFNLSMVSQDYEQV 118

Query: 158 MDVSNEAAMAAPARP 172
            +++ +       + 
Sbjct: 119 SELALQIEELRQEKG 133

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-05
 Identities = 15/95 (15%), Positives = 32/95 (33%), Gaps = 1/95 (1%)

Query: 15  DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-NFTEAVADANRAIELEPSMSKAY 73
           D+  E A+ L   AIE++  +  ++  R      LQ +  E +      IE +P   + +
Sbjct: 56  DERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVW 115

Query: 74  WRKATACMKLEEYETAKVALEKGASLAPGDSRFTN 108
             +      L +       +    +    +     
Sbjct: 116 HHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQ 150

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 315

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (88), Expect = 9e-04
 Identities = 8/69 (11%), Positives = 19/69 (27%), Gaps = 1/69 (1%)

Query: 28  AIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE-Y 86
            I  S    +++        + +    A      AIEL  +    +  +      L++  
Sbjct: 35  QIIYSDKFRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDL 94

Query: 87  ETAKVALEK 95
                 +  
Sbjct: 95  HEEMNYITA 103

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 334

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 43.1 bits (100), Expect = 3e-05
 Identities = 10/83 (12%), Positives = 23/83 (27%), Gaps = 1/83 (1%)

Query: 2   ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANR 61
               E   +++ +      +     +    +           +A   L    E +   + 
Sbjct: 242 LFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFST 301

Query: 62  AIELEPSMSKAYWRKATACMKLE 84
              ++P M  AY     +   LE
Sbjct: 302 LKAVDP-MRAAYLDDLRSKFLLE 323

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} Length = 366

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

 Score = 41.1 bits (94), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 31/95 (32%), Gaps = 5/95 (5%)

Query: 27  QAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEP-----SMSKAYWRKATACM 81
           + I      AE  A RAQ +I   N  EA   A  A+E  P     S   A         
Sbjct: 3   KDIREDTMHAEFNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLH 62

Query: 82  KLEEYETAKVALEKGASLAPGDSRFTNLIKECEER 116
              E   +   +++   +A     +   +    ++
Sbjct: 63  CKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ 97

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.6 bits (93), Expect = 2e-04
 Identities = 16/108 (14%), Positives = 32/108 (29%)

Query: 7   KKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELE 66
           ++      +     A  L+  A++  P   E +        + +    A++   R +EL+
Sbjct: 24  EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK 83

Query: 67  PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE 114
           P    A    A +         A   L       P  +      +E  
Sbjct: 84  PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGA 131

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} Length = 323

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 15/90 (16%), Positives = 26/90 (28%), Gaps = 11/90 (12%)

Query: 17  YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK 76
             E A   Y +A+E+ P       +   + I L    EAV     A+ ++          
Sbjct: 221 QSEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEG 280

Query: 77  AT-----------ACMKLEEYETAKVALEK 95
                        A   L + +    A  +
Sbjct: 281 GAMSENIWSTLRLALSMLGQSDAYGAADAR 310

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 124

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 37.8 bits (88), Expect = 4e-04
 Identities = 15/77 (19%), Positives = 28/77 (36%), Gaps = 8/77 (10%)

Query: 53  TEAVADANRAIEL-------EPSMSK-AYWRKATACMKLEEYETAKVALEKGASLAPGDS 104
           +  V D    +++         S  +   +     C KL EY  AK  ++        + 
Sbjct: 48  STDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 107

Query: 105 RFTNLIKECEERIAEET 121
           +   L    E++I +ET
Sbjct: 108 QVGALKSMVEDKIQKET 124

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.6 bits (89), Expect = 9e-04
 Identities = 11/72 (15%), Positives = 23/72 (31%)

Query: 18  FELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKA 77
              A   Y  A ++ P++ + +   A  +    +    +    R+I ++     A     
Sbjct: 168 TSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQ 227

Query: 78  TACMKLEEYETA 89
            A  K  E    
Sbjct: 228 KALSKALESRDE 239

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} Length = 497

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 0.002
 Identities = 12/109 (11%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 4   DLEKKAKEAFIDDYFELAYDLYSQAIE-------ISPNSAELFADRAQASIKLQNFTEAV 56
           +  +   +A +  + E A   Y+Q ++       +        +     S K  + +  V
Sbjct: 81  NPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIV 140

Query: 57  ADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSR 105
              + +                      +   A+      A L P + +
Sbjct: 141 KPQSSSCSYIC--QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQ 187

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} Length = 259

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

 Score = 37.1 bits (84), Expect = 0.002
 Identities = 6/65 (9%), Positives = 17/65 (26%)

Query: 21  AYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC 80
                +    ++ + +E      +  + L +   A A    A+         +       
Sbjct: 194 LKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHRYALLEL 253

Query: 81  MKLEE 85
             L +
Sbjct: 254 SLLGQ 258

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d1rl1a_	92	Suppressor of G2 allele of skp1 homolog, gst1 {Hum	99.91
d1wh0a_	134	Ubiquitin carboxyl-terminal hydrolase 19, USP19 {H	99.89
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.83
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.79
d1ejfa_	110	Co-chaperone p23 {Human (Homo sapiens) [TaxId: 960	99.78
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.76
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.75
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.74
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.73
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.7
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.68
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.63
d1wgva_	124	NudC domain containing protein 3, NUDCD3 (KIAA1068	99.63
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	99.61
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.58
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.5
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	99.49
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.48
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.43
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.42
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.41
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	99.41
d1wfia_	131	Nuclear migration protein nudC {Mouse (Mus musculu	99.41
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.39
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.38
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.36
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.29
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.21
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	99.17
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	99.15
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	99.14
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	99.13
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	99.1
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.09
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.09
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.08
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.08
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	99.06
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.99
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.85
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.82
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.82
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.74
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.73
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.68
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.65
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.59
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.53
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.47
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.29
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	98.25
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.16
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	98.14
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	98.12
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.0
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.95
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.77
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.69
d1shsa_	115	Small heat shock protein {Archaeon Methanococcus j	97.48
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	97.4
d1gmea_	150	Small heat shock protein {Wheat (Triticum aestivum	97.31
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.14
d2cfua2	505	Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxI	85.89
d1wfda_	93	Hypothetical protein 1500032H18Rik {Mouse (Mus mus	83.15

>d1rl1a_ b.15.1.3 (A:) Suppressor of G2 allele of skp1 homolog, gst1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Suppressor of G2 allele of skp1 homolog, gst1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.2e-24  Score=167.27  Aligned_cols=91  Identities=36%  Similarity=0.678  Sum_probs=87.1

Q ss_pred             CCcCccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEEEeec
Q 017264          172 PKYRHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKA  251 (374)
Q Consensus       172 ~~~r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~  251 (374)
                      .++||+||||++.|+|+|+++|+.++++.|+|++++|+|.+...++..|.++++||++|+|++|+|++.+++|+|+|+|+
T Consensus         1 sk~ry~W~Qt~~~V~i~i~~~~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~~~~~kiei~L~K~   80 (92)
T d1rl1a_           1 SKIKYDWYQTESQVVITLMIKNVQKNDVNVEFSEKELSALVKLPSGEDYNLKLELLHPIIPEQSTFKVLSTKIEIKLKKP   80 (92)
T ss_dssp             CCCCEEEEECSSEEEEEECCCSCCGGGEEEECSSSCEEEEEECTTSSEEEEEECBSSCCCGGGEEEEECSSSEEEEEECS
T ss_pred             CCCceeEEeCCCEEEEEEEeCCCChHheEEEEecCEEEEEEEcCCCcEEEEEEEcCcccCchhcEEEEeCCEEEEEEEEC
Confidence            36899999999999999999999999999999999999999888888999999999999999999999999999999999


Q ss_pred             CCCCCCccccC
Q 017264          252 EPIQWSSLEFS  262 (374)
Q Consensus       252 ~~~~W~~L~~~  262 (374)
                      ++..|++|+++
T Consensus        81 ~~~~W~~L~~~   91 (92)
T d1rl1a_          81 EAVRWEKLEGQ   91 (92)
T ss_dssp             SCCCCSSSBTT
T ss_pred             CCCcCcCcccC
Confidence            99999999975

>d1wh0a_ b.15.1.3 (A:) Ubiquitin carboxyl-terminal hydrolase 19, USP19 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: GS domain
domain: Ubiquitin carboxyl-terminal hydrolase 19, USP19
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=9e-24  Score=172.24  Aligned_cols=94  Identities=24%  Similarity=0.429  Sum_probs=85.6

Q ss_pred             CCCcCccccccC-CeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcCCC------------CeeeeccccccccccCceEE
Q 017264          171 RPKYRHEFYQKP-EEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVPGE------------EAYHFQPRLFGKIIPAKCRY  237 (374)
Q Consensus       171 ~~~~r~~W~Qt~-~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~~~------------~~y~~~~~L~~~I~p~~s~~  237 (374)
                      .+.+||+|||+. +.|+|+||+|||.++++.|+|.+++|+|.|+..+|            ..|.++++||++|+|++|+|
T Consensus        17 ~~~ir~dwyq~~~~~V~VtI~~K~v~ke~~~V~f~~~sl~v~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~I~pe~S~~   96 (134)
T d1wh0a_          17 LAFVKNDSYEKGPDSVVVHVYVKEICRDTSRVLFREQDFTLIFQTRDGNFLRLHPGCGPHTTFRWQVKLRNLIEPEQCTF   96 (134)
T ss_dssp             ESCCCEEEEEETTTEEEEEEECCSBCTTSCEEEECSSEEEEEECBCCHHHHHHSTTCCTTSCEEEEEEBSSCEEEEEEEE
T ss_pred             ccccccceeecCCCEEEEEEEeCCCchhheEEEEeCCEEEEEEECCCCcceeeccccCcCeeEEEeeecccccChhHcEE
Confidence            458899999995 79999999999999999999999999999986554            35888889999999999999


Q ss_pred             EEcCcEEEEEEeecCCCCCCccccCCC
Q 017264          238 EVLSTKVEIRLAKAEPIQWSSLEFSKG  264 (374)
Q Consensus       238 ~v~~~kiei~L~K~~~~~W~~L~~~~~  264 (374)
                      +|+++||||+|+|+++.+|++|++...
T Consensus        97 ~v~~~kiei~L~K~~~~~W~~Le~~~~  123 (134)
T d1wh0a_          97 CFTASRIDICLRKRQSQRWGGLEAPAA  123 (134)
T ss_dssp             EECSSEEEEEEEESSSCCCSCSBCCCS
T ss_pred             EeCCCEEEEEEEeCCCCcCcCcccccc
Confidence            999999999999999999999997643

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.83  E-value=1.3e-19  Score=144.92  Aligned_cols=114  Identities=26%  Similarity=0.440  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++.+|+.++..|+|++|+..|+++|+.+|.++.+|.++|.||..+|++++|+.+|.+++.++|+++.+|+++|.++.
T Consensus         3 ~~~l~~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~   82 (117)
T d1elwa_           3 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE   82 (117)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHH
Confidence            46789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .+|+|++|+.+|+++++++|+++.+...+..++.
T Consensus        83 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~~  116 (117)
T d1elwa_          83 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQNMEA  116 (117)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHH
T ss_pred             HccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhC
Confidence            9999999999999999999999999999988875

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.79  E-value=2e-18  Score=144.96  Aligned_cols=118  Identities=31%  Similarity=0.499  Sum_probs=112.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      |+.+..+|+.+|+.|+|++|+..|.++|+++|+++.+|.++|.||+.+|++++|+.+|.++++++|++..+|+++|.+++
T Consensus        10 a~~l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~   89 (159)
T d1a17a_          10 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM   89 (159)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHH
Confidence            56889999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .+|+|++|+.+|++++.++|++..+...+..|...+..
T Consensus        90 ~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~  127 (159)
T d1a17a_          90 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQ  127 (159)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999988888877655443

>d1ejfa_ b.15.1.2 (A:) Co-chaperone p23 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Co-chaperone p23-like
domain: Co-chaperone p23
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=1.5e-19  Score=142.97  Aligned_cols=87  Identities=20%  Similarity=0.255  Sum_probs=78.1

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEc-CCCCeeeeccccccccccCceEEEEcCcEEEEEEeecCC
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDV-PGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIRLAKAEP  253 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~-~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~L~K~~~  253 (374)
                      +|.||||.+.|+|+|+++++  .++.|+|+.++|.|.+.. .+|..|.++++||++|+|++|++++.+++|+|+|+|+++
T Consensus         5 ~~~W~Qt~~~V~i~I~v~~~--~~~~v~i~~~~l~~~~~~~~~~~~y~l~~~L~~~I~~~~s~~~v~~~kiei~L~K~~~   82 (110)
T d1ejfa_           5 SAKWYDRRDYVFIEFCVEDS--KDVNVNFEKSKLTFSCLGGSDNFKHLNEIDLFHCIDPNDSKHKRTDRSILCCLRKGES   82 (110)
T ss_dssp             CEEEEECSSEEEEEECCTTE--EEEEEEEETTEEEEEEEETTTTEEEEEEEEBSSCEEEEEEEEEECSSCEEEEEEESST
T ss_pred             CcEEEECCCEEEEEEEeCCC--CCceEEEEeceEEEEEEecCCCceEEEEEEcccCcccCccEEEEeCCEEEEEEEEcCC
Confidence            57899999999999999975  688999999999998764 456789999999999999999999999999999999986


Q ss_pred             -CCCCccccCC
Q 017264          254 -IQWSSLEFSK  263 (374)
Q Consensus       254 -~~W~~L~~~~  263 (374)
                       ..|++|+...
T Consensus        83 ~~~W~~L~~~~   93 (110)
T d1ejfa_          83 GQSWPRLTKER   93 (110)
T ss_dssp             TCCCSSSBSSC
T ss_pred             CCCCCceecCC
Confidence             6899999863

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.76  E-value=1.4e-17  Score=139.13  Aligned_cols=119  Identities=23%  Similarity=0.307  Sum_probs=110.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------AELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      |..+...|+.+|..|+|.+|+..|.+||...+..                ..++.++|.||+++|++.+|+.+|.+||.+
T Consensus        17 a~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~   96 (153)
T d2fbna1          17 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI   96 (153)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhccccc
Confidence            3467889999999999999999999999875543                347889999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|.+..+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|..+++..
T Consensus        97 ~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl~~~  151 (153)
T d2fbna1          97 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  151 (153)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999888764

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=2.8e-17  Score=139.81  Aligned_cols=119  Identities=21%  Similarity=0.360  Sum_probs=110.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      +..+...|+.+|..|+|++|+..|++||...+..               ..+|.++|.||+++|+|++|+.+++++|.++
T Consensus        13 a~~l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~   92 (170)
T d1p5qa1          13 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD   92 (170)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc
Confidence            4567899999999999999999999999997755               3678889999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++..+++++|.+|+.+|+|++|+.+|+++++++|+++.+...+..+..++...
T Consensus        93 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  146 (170)
T d1p5qa1          93 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQ  146 (170)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHH
T ss_pred             ccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999988777654

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.74  E-value=4.7e-18  Score=146.58  Aligned_cols=103  Identities=28%  Similarity=0.411  Sum_probs=99.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      |+.+...|+.++..|+|++|+..|++||.++|.++.+|.++|.||.++|+|++|+.+|.+|+.++|++..+|+++|.+|+
T Consensus         4 a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~~   83 (201)
T d2c2la1           4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL   83 (201)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            67899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCCh
Q 017264           82 KLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      .+|+|++|+.+|++++.++|++.
T Consensus        84 ~l~~~~~A~~~~~~al~l~p~~~  106 (201)
T d2c2la1          84 EMESYDEAIANLQRAYSLAKEQR  106 (201)
T ss_dssp             HTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HCCCHHHHHHHHHHHHHhCcccH
Confidence            99999999999999999987644

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.73  E-value=7.8e-17  Score=136.59  Aligned_cols=119  Identities=23%  Similarity=0.321  Sum_probs=109.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS---------------AELFADRAQASIKLQNFTEAVADANRAIELE   66 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~---------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~   66 (374)
                      +..+...|+.+|..|+|.+|+..|++||...+..               ..+|.++|.||+++|+|.+|+.++++++.++
T Consensus        15 a~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~   94 (168)
T d1kt1a1          15 AAIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD   94 (168)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhhhhhcchhHHHHHHhHHHHHHHhhhcccchhhhhhhhhcc
Confidence            4578899999999999999999999999874443               4568899999999999999999999999999


Q ss_pred             CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           67 PSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        67 p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      |++..+++++|.+|+.+|+|++|+.+|.+++.++|++..+...+..+..++...
T Consensus        95 p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~  148 (168)
T d1kt1a1          95 SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEH  148 (168)
T ss_dssp             TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhH
Confidence            999999999999999999999999999999999999999999998888777654

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.70  E-value=1.2e-16  Score=135.36  Aligned_cols=119  Identities=24%  Similarity=0.433  Sum_probs=110.5

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHh----------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEI----------------SPNSAELFADRAQASIKLQNFTEAVADANRAIEL   65 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~----------------~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l   65 (374)
                      +..+...|+.++..|+|..|+..|+++|..                +|....++.+||.||.++|+|++|+.+|.+||++
T Consensus        27 a~~~~~~~~~~~~~~~y~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~  106 (169)
T d1ihga1          27 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEI  106 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhhhhhhhhhhHHHHHhChhhHHHHHHHHHHHHhhcccchhhhhhhhhhhh
Confidence            456788999999999999999999999864                3555778999999999999999999999999999


Q ss_pred             CCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           66 EPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        66 ~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +|+++.+|+++|.+|+.+|+|++|+.+|+++++++|++..+...+..|..++...
T Consensus       107 ~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~  161 (169)
T d1ihga1         107 DPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQ  161 (169)
T ss_dssp             CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999998888765

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=3.8e-16  Score=126.30  Aligned_cols=117  Identities=20%  Similarity=0.275  Sum_probs=105.3

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC-------HHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM-------SKAYW   74 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~-------~~a~~   74 (374)
                      |..+.+.|+.+|..|+|++|+.+|+++|+++|+++.++.+||.||.++|+|++|+.+|.+++.++|.+       +.+|+
T Consensus         4 a~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~   83 (128)
T d1elra_           4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (128)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence            56788999999999999999999999999999999999999999999999999999999999998865       45788


Q ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           75 RKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        75 ~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++|.++..+++|++|+.+|++++..+++ ..+...+..+.+.++.
T Consensus        84 ~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~l~~~~k~lke  127 (128)
T d1elra_          84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT-PDVLKKCQQAEKILKE  127 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHhcCCC-HHHHHHHHHHHHHHhC
Confidence            8999999999999999999999998875 5677777777766653

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.63  E-value=3.8e-15  Score=132.83  Aligned_cols=116  Identities=21%  Similarity=0.129  Sum_probs=108.8

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +..++.+|..++..|+|++|+..|.++|.++|+++.+|.++|.||.++|++++|+.+|++++.++|+++.+++++|.+|+
T Consensus        37 a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~  116 (259)
T d1xnfa_          37 AQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhhhhhhHHHHHHHHH
Confidence            45688999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      .+|++++|+..|+++++++|.+.....++..+...+
T Consensus       117 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~  152 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQDDPNDPFRSLWLYLAEQKL  152 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhhccccHHHHHHHHHHHHHh
Confidence            999999999999999999999988777766655544

>d1wgva_ b.15.1.4 (A:) NudC domain containing protein 3, NUDCD3 (KIAA1068) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: NudC domain containing protein 3, NUDCD3 (KIAA1068)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=9.1e-16  Score=123.51  Aligned_cols=89  Identities=17%  Similarity=0.195  Sum_probs=77.5

Q ss_pred             CccccccCCeEEEEEEeC-C-CCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCcEEEEE-Eeec
Q 017264          175 RHEFYQKPEEVVVTVFAK-G-IPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLSTKVEIR-LAKA  251 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k-~-~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~kiei~-L~K~  251 (374)
                      +|.|+||.+.|+|+|.++ + +..++|.|+|+.++|.|.+....+..|.++.+||++|+|++|+|.+.+.+++|+ |+|.
T Consensus        21 ~Y~W~Qt~~~V~i~i~lp~~~~k~kdv~v~~~~~~l~v~v~~~~~~~~~l~g~L~~~I~~deS~w~i~~~~~~i~~lkK~  100 (124)
T d1wgva_          21 NYTWSQDYTDLEVRVPVPKHVVKGKQVSVALSSSSIRVAMLEENGERVLMEGKLTHKINTESSLWSLEPGKCVLVNLSKV  100 (124)
T ss_dssp             SCEEEEETTEEEEEEECCTTCCSGGGEEEEECSSEEEEEEECSSSEEEEEEEEBSSCBCTTTCEEEECTTSEEEEEECBS
T ss_pred             CeEEEeECCEEEEEEEeCCCCcchhhEEEEEEeCEEEEEEeccCCcceEEeCcccCcccccccEEEEeCCCEEEEEEEec
Confidence            799999999999999886 3 345899999999999999988778889999999999999999999999876665 5555


Q ss_pred             CCCCCCccccCC
Q 017264          252 EPIQWSSLEFSK  263 (374)
Q Consensus       252 ~~~~W~~L~~~~  263 (374)
                      .+..|++|...+
T Consensus       101 ~~~~W~~L~~ge  112 (124)
T d1wgva_         101 GEYWWNAILEGE  112 (124)
T ss_dssp             SSCCCSCSBTTS
T ss_pred             CCCcChhhccCC
Confidence            668999998654

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=2e-15  Score=121.20  Aligned_cols=115  Identities=10%  Similarity=0.067  Sum_probs=104.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC--HHHHHHHHHH
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL---QNFTEAVADANRAIELEPSM--SKAYWRKATA   79 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~--~~a~~~lg~~   79 (374)
                      +-+.++.++..++|++|.+.|.++|.++|.++.+++++|.|+++.   +++.+|+..+++++..+|..  ..+++.+|.+
T Consensus         2 ~~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~   81 (122)
T d1nzna_           2 MEAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVG   81 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHH
Confidence            346788999999999999999999999999999999999999874   55667999999999998765  5699999999


Q ss_pred             HHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           80 CMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        80 ~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      |+.+|+|++|+.+|+++++++|++..+......+..++.+
T Consensus        82 y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~~I~~~~~k  121 (122)
T d1nzna_          82 NYRLKEYEKALKYVRGLLQTEPQNNQAKELERLIDKAMKK  121 (122)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHHcC
Confidence            9999999999999999999999999999998888887764

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.58  E-value=9.7e-15  Score=115.05  Aligned_cols=94  Identities=12%  Similarity=0.005  Sum_probs=91.2

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      ..+..|..+++.|+|.+|+..|+++|..+|+++.++..+|.+|.+++++++|+.+++++++++|.+..+++.+|.+|..+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHH
Q 017264           84 EEYETAKVALEKGA   97 (374)
Q Consensus        84 g~~~eA~~~~~~a~   97 (374)
                      |++.+|+.+|++.+
T Consensus        98 g~~~~A~~~l~~~l  111 (112)
T d1hxia_          98 HNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHh
Confidence            99999999999875

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.1e-13  Score=119.40  Aligned_cols=98  Identities=19%  Similarity=0.226  Sum_probs=91.3

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      -.++++|..++..|+|+.|++.|.+   +.+.++.+++++|.||..+|+|++|+.+|.+|++++|+++.+|+++|.+|+.
T Consensus         6 ~~l~~~g~~~~~~~d~~~Al~~~~~---i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~   82 (192)
T d1hh8a_           6 ISLWNEGVLAADKKDWKGALDAFSA---VQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ   82 (192)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHT---SSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHh---cCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHh
Confidence            3578999999999999999999987   4566789999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCC
Q 017264           83 LEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~  103 (374)
                      +|+|++|+..|++++...+.+
T Consensus        83 ~g~~~~A~~~~~kAl~~~~~n  103 (192)
T d1hh8a_          83 TEKYDLAIKDLKEALIQLRGN  103 (192)
T ss_dssp             TTCHHHHHHHHHHHHHTTTTC
T ss_pred             hccHHHHHHHHHHHHHhCccC
Confidence            999999999999999876654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=99.49  E-value=1.2e-13  Score=113.86  Aligned_cols=110  Identities=15%  Similarity=0.185  Sum_probs=98.9

Q ss_pred             HHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc----------cCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264           11 EAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKL----------QNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus        11 ~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l----------~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      .+-+.+.|++|+..|+++|.++|+++.+++++|.+|..+          +.+++|+..|++|++++|+++.+|+++|.+|
T Consensus         6 ~~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           6 EFDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAY   85 (145)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHH
Confidence            455677899999999999999999999999999999864          5568999999999999999999999999999


Q ss_pred             HHhcC-----------HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           81 MKLEE-----------YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        81 ~~lg~-----------~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      ..+|+           |.+|+.+|+++++++|++...+..+..+.+.++..
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~~ka~~~~  136 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMTAKAPQLH  136 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHHHHHHHHH
Confidence            88764           79999999999999999999999998887766544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=7e-13  Score=114.31  Aligned_cols=103  Identities=15%  Similarity=0.087  Sum_probs=95.2

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------------
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------------   69 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------------   69 (374)
                      +..+++.|..++..|+|++|+..|++||+++|+++.+|++||.||.++|+|++|+.+|++|+...+.+            
T Consensus        36 ~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A~~~~~kAl~~~~~n~~~~~~~~~~~~  115 (192)
T d1hh8a_          36 SRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQF  115 (192)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCC
T ss_pred             HHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHHHHHHHHHHHhCccCchHHHHHhhhhc
Confidence            34678999999999999999999999999999999999999999999999999999999999875532            


Q ss_pred             ----HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           70 ----SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        70 ----~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                          .++++++|.++..+|++++|+..|.+++.+.|...
T Consensus       116 ~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_         116 KLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             EEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence                47899999999999999999999999999998753

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=7.2e-13  Score=122.99  Aligned_cols=118  Identities=13%  Similarity=0.019  Sum_probs=110.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN-FTEAVADANRAIELEPSMSKAYWRKATACM   81 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~-~~~Al~~~~~al~l~p~~~~a~~~lg~~~~   81 (374)
                      +.+...|..+.+.+.+++|+..|++||+++|.+..+|.+||.++..++. +++|+.++.+++.++|++..+|+.+|.++.
T Consensus        44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~  123 (315)
T d2h6fa1          44 DVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVE  123 (315)
T ss_dssp             HHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHH
Confidence            4556788899999999999999999999999999999999999999874 999999999999999999999999999999


Q ss_pred             HhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           82 KLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        82 ~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+|++++|+.+|.++++++|.+..+...++.+...++..
T Consensus       124 ~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~  162 (315)
T d2h6fa1         124 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLW  162 (315)
T ss_dssp             HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCC
T ss_pred             hhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhh
Confidence            999999999999999999999999999999888877664

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=6.6e-13  Score=121.85  Aligned_cols=103  Identities=17%  Similarity=0.214  Sum_probs=97.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+...|..++..|++++|+..|.+++..+|+++.++..+|.+|..+|++++|+..|+++++++|+++.+|+.+|.+|+.
T Consensus       173 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         173 DVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             ccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHHHHHHHHHHH
Confidence            34667899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChh
Q 017264           83 LEEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      +|+|++|+.+|+++++++|++..
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~  275 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRG  275 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC--
T ss_pred             CCCHHHHHHHHHHHHHhCCcChh
Confidence            99999999999999999998765

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=9.7e-13  Score=121.62  Aligned_cols=112  Identities=17%  Similarity=0.147  Sum_probs=63.0

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +...|..+...|++.+|+..|..++...|.+...+..+|.+|..+|++++|+..|+++++++|+++.+++.+|.+|..+|
T Consensus       274 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g  353 (388)
T d1w3ba_         274 YCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQG  353 (388)
T ss_dssp             HHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence            34444455555555555555555555555555555555555555555555666666666666666666666666666666


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ++++|+.+|+++++++|++..+...++.+..+
T Consensus       354 ~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~  385 (388)
T d1w3ba_         354 KLQEALMHYKEAIRISPTFADAYSNMGNTLKE  385 (388)
T ss_dssp             CCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            66666666666666666665555555555433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=99.41  E-value=1.3e-13  Score=114.73  Aligned_cols=101  Identities=22%  Similarity=0.155  Sum_probs=88.8

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC--
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------------AELFADRAQASIKLQNFTEAVADANRAIELEPS--   68 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~--   68 (374)
                      ..++..|+.++..|+|++|+..|+++|.+.|..            +.+|.++|.||..+|+|++|+.++.+++.+.+.  
T Consensus        10 ~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~   89 (156)
T d2hr2a1          10 YLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRG   89 (156)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccc
Confidence            345677999999999999999999999997764            468899999999999999999999999987542  


Q ss_pred             ---------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCC
Q 017264           69 ---------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGD  103 (374)
Q Consensus        69 ---------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~  103 (374)
                               ...+++++|.+|..+|++++|+.+|++++++.|..
T Consensus        90 ~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~  133 (156)
T d2hr2a1          90 ELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER  133 (156)
T ss_dssp             CTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred             cccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence                     34578999999999999999999999999986543

>d1wfia_ b.15.1.4 (A:) Nuclear migration protein nudC {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: Nuclear movement domain
domain: Nuclear migration protein nudC
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.41  E-value=4.7e-13  Score=108.15  Aligned_cols=86  Identities=19%  Similarity=0.261  Sum_probs=73.9

Q ss_pred             CccccccCCeEEEEEEeC---CCCCCceEEEEeeeEEEEEEEcCCCCeeeeccccccccccCceEEEEcCc-EEEEEEee
Q 017264          175 RHEFYQKPEEVVVTVFAK---GIPAKNVTVDFGEQILSVSIDVPGEEAYHFQPRLFGKIIPAKCRYEVLST-KVEIRLAK  250 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k---~~~~~~v~v~~~~~~l~v~~~~~~~~~y~~~~~L~~~I~p~~s~~~v~~~-kiei~L~K  250 (374)
                      +|.|.||.+.|+|+|.++   ++.+++|.|+|+.++|.|.+.   +....+..+||++|+|+.|+|.+.+. .++|+|.|
T Consensus         9 ~Y~W~Qt~~eV~I~V~~~~~~~~~~~di~v~i~~~~l~v~v~---~~~~ll~g~L~~~I~~des~W~ied~~~l~i~L~K   85 (131)
T d1wfia_           9 NYRWTQTLAELDLAVPFRVSFRLKGKDVVVDIQRRHLRVGLK---GQPPVVDGELYNEVKVEESSWLIEDGKVVTVHLEK   85 (131)
T ss_dssp             SSEEEECSSEEEEEECCCCSSCCCTTSEEEEEETTEEEEEET---TSCCSBCSCBSSCBCSTTCEEEEETTTEEEEEEEB
T ss_pred             CeEEEeeCCEEEEEEEcCCCCCcchhhEEEEeeCCEEEEEEc---CCceeecccccCcccccccEEEEeCCCEEEEEEEE
Confidence            799999999999999764   577899999999999999986   33455677999999999999999865 68999999


Q ss_pred             cCC-CCCCccccCC
Q 017264          251 AEP-IQWSSLEFSK  263 (374)
Q Consensus       251 ~~~-~~W~~L~~~~  263 (374)
                      +.. ..|++|...+
T Consensus        86 ~~~~~~W~~l~~gd   99 (131)
T d1wfia_          86 INKMEWWNRLVTSD   99 (131)
T ss_dssp             SSSCCCCSCSBSSC
T ss_pred             CCCCccCHHHcCCC
Confidence            876 6899998654

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=1.9e-12  Score=119.64  Aligned_cols=110  Identities=13%  Similarity=0.071  Sum_probs=102.4

Q ss_pred             HHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcC
Q 017264            6 EKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEE   85 (374)
Q Consensus         6 ~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~   85 (374)
                      +..|+.+++.|+|++|+..|.++++.+|+++.++..+|.+|.++|++++|+..|+++++++|+++.+++.+|.+|..+|+
T Consensus         3 l~la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~   82 (388)
T d1w3ba_           3 MELAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQ   82 (388)
T ss_dssp             CTHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhcc
Confidence            56899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      +++|+..|..+...++..............
T Consensus        83 ~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  112 (388)
T d1w3ba_          83 LQEAIEHYRHALRLKPDFIDGYINLAAALV  112 (388)
T ss_dssp             HHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999988876555544443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.6e-12  Score=120.67  Aligned_cols=115  Identities=7%  Similarity=-0.033  Sum_probs=107.2

Q ss_pred             hHHHHHHHHHHHhcc-CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDD-YFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         2 a~~l~~~g~~~~~~~-~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ...+..+|..+...+ ++++|+..|+++|..+|.+..++..||.++.++|++++|+.++.+++.++|++..+|+.+|.++
T Consensus        77 ~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~  156 (315)
T d2h6fa1          77 YTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVI  156 (315)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHH
Confidence            346788999998865 6999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           81 MKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        81 ~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ..+|++++|+.+|.++++++|.+......++.+...
T Consensus       157 ~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~  192 (315)
T d2h6fa1         157 QEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISN  192 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHH
Confidence            999999999999999999999999888877776544

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=4.3e-12  Score=116.29  Aligned_cols=102  Identities=15%  Similarity=0.116  Sum_probs=97.9

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      ..+.+|..++..|+|++|+..|+++|+.+|+++.+|..+|.+|..+|++++|+..|.+++.++|++..+++.+|.+|..+
T Consensus        21 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~  100 (323)
T d1fcha_          21 QPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  100 (323)
T ss_dssp             SHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhcccccccccccccccccccc
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCHHHHHHHHHHHHhcCCCChh
Q 017264           84 EEYETAKVALEKGASLAPGDSR  105 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~~  105 (374)
                      |++++|+.+|.+++.+.|....
T Consensus       101 ~~~~~A~~~~~~~~~~~~~~~~  122 (323)
T d1fcha_         101 SLQRQACEILRDWLRYTPAYAH  122 (323)
T ss_dssp             TCHHHHHHHHHHHHHTSTTTGG
T ss_pred             ccccccccchhhHHHhccchHH
Confidence            9999999999999999987654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=1.2e-11  Score=93.92  Aligned_cols=82  Identities=15%  Similarity=0.094  Sum_probs=66.7

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-------HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-------AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYW   74 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-------~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~   74 (374)
                      +++.+..|..+++.|+|.+|+..|.+||++.|.+       ..++.++|.||.++|++++|+..++++|+++|++..++.
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            5678888889999999999999998888875443       577888888888888888888888888888888888888


Q ss_pred             HHHHHHHHh
Q 017264           75 RKATACMKL   83 (374)
Q Consensus        75 ~lg~~~~~l   83 (374)
                      +++.+...+
T Consensus        85 Nl~~~~~~l   93 (95)
T d1tjca_          85 NLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            877665444

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.21  E-value=5.5e-11  Score=105.17  Aligned_cols=106  Identities=14%  Similarity=0.047  Sum_probs=94.7

Q ss_pred             ccCHHHHHHHHHHHHHhCC----CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISP----NSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAK   90 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p----~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~   90 (374)
                      ...++.|+..+++++...+    ..+.+++.+|.+|.++|++++|+.+|.+++.++|+++.+|+++|.+|..+|++++|+
T Consensus        12 ~~~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~   91 (259)
T d1xnfa_          12 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   91 (259)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cHHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhh
Confidence            4457788899999987643    346799999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           91 VALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      .+|+++++++|++......++.+...+++.
T Consensus        92 ~~~~~al~~~p~~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          92 EAFDSVLELDPTYNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHHHHHCTTCTHHHHHHHHHHHHTTCH
T ss_pred             hhhhHHHHHHhhhhhhHHHHHHHHHHHhhH
Confidence            999999999999999888888887666554

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.17  E-value=1.2e-10  Score=97.53  Aligned_cols=87  Identities=20%  Similarity=0.192  Sum_probs=81.3

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+.++|.++++.|+|++|+..|+++|+++|.++.+|+++|.+|..+|+|++|+.+|.++++++|++..++..++.+...+
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l  158 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKI  158 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCHHHHH
Q 017264           84 EEYETAK   90 (374)
Q Consensus        84 g~~~eA~   90 (374)
                      ..+.++.
T Consensus       159 ~~~~~~~  165 (169)
T d1ihga1         159 KAQKDKE  165 (169)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            7776654

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.15  E-value=1.6e-10  Score=87.52  Aligned_cols=83  Identities=14%  Similarity=0.035  Sum_probs=76.0

Q ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-------CHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHH
Q 017264           36 AELFADRAQASIKLQNFTEAVADANRAIELEPS-------MSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        36 ~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~-------~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      ++-++.+|.++++.|+|.+|+..|++|+++.|.       ...++.++|.+++.+|+|++|+.+|+++++++|++..+..
T Consensus         5 addc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~   84 (95)
T d1tjca_           5 AEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANG   84 (95)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHH
Confidence            566789999999999999999999999998653       3678999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHH
Q 017264          109 LIKECEERIA  118 (374)
Q Consensus       109 ~~~~~~~~l~  118 (374)
                      .+..++..|.
T Consensus        85 Nl~~~~~~l~   94 (95)
T d1tjca_          85 NLKYFEYIMA   94 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHhC
Confidence            9998887765

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.14  E-value=7e-10  Score=94.11  Aligned_cols=95  Identities=16%  Similarity=0.040  Sum_probs=88.7

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----------------------HHHHHHHHHHHHHccCHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----------------------AELFADRAQASIKLQNFTEAVADAN   60 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----------------------~~~~~~ra~~~~~l~~~~~Al~~~~   60 (374)
                      +.+...|..+...|++++|+.+|.+||.+.+..                      ..++.+++.++..+|++++|+.+++
T Consensus        12 ~~~~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~Al~~~~   91 (179)
T d2ff4a2          12 VAEKTAGVHAAAAGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELE   91 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcccccccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHHHHHHH
Confidence            467889999999999999999999999997654                      3578899999999999999999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Q 017264           61 RAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGA   97 (374)
Q Consensus        61 ~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~   97 (374)
                      +++.++|.+..+|..++.+|..+|++.+|+..|+++.
T Consensus        92 ~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          92 ALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999983

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=99.13  E-value=2.9e-10  Score=95.15  Aligned_cols=85  Identities=15%  Similarity=0.159  Sum_probs=79.8

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+.+.|.+++..|+|.+|+..|+++|.++|.+..+++++|.||..+|+|++|+.+|.+++.++|++..++..++.+...+
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~  145 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKA  145 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            35678999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             cCHHH
Q 017264           84 EEYET   88 (374)
Q Consensus        84 g~~~e   88 (374)
                      +.+.+
T Consensus       146 ~~~~e  150 (168)
T d1kt1a1         146 KEHNE  150 (168)
T ss_dssp             HHHHH
T ss_pred             HhHHH
Confidence            77654

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=5.9e-10  Score=93.53  Aligned_cols=86  Identities=19%  Similarity=0.205  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +.+.|.++++.|+|++|+.+|+++|.++|+++.+++.+|.||..+|+|++|+.+|++++.++|++..+...++.+...++
T Consensus        65 ~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~  144 (170)
T d1p5qa1          65 HLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIR  144 (170)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999999988877


Q ss_pred             CHHHHH
Q 017264           85 EYETAK   90 (374)
Q Consensus        85 ~~~eA~   90 (374)
                      ++....
T Consensus       145 ~~~~~e  150 (170)
T d1p5qa1         145 RQLARE  150 (170)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            776554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.09  E-value=3e-10  Score=96.49  Aligned_cols=86  Identities=19%  Similarity=0.249  Sum_probs=81.0

Q ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHH
Q 017264           35 SAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECE  114 (374)
Q Consensus        35 ~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~  114 (374)
                      ++..+...|.+|++.|+|++|+..|.+||.++|.++.+|+++|.+|..+|+|++|+.+|+++++++|++......++.+.
T Consensus         3 ~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~~   82 (201)
T d2c2la1           3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQ   82 (201)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHHH
Confidence            46678899999999999999999999999999999999999999999999999999999999999999999988899988


Q ss_pred             HHHHhh
Q 017264          115 ERIAEE  120 (374)
Q Consensus       115 ~~l~~~  120 (374)
                      ..++..
T Consensus        83 ~~l~~~   88 (201)
T d2c2la1          83 LEMESY   88 (201)
T ss_dssp             HHTTCH
T ss_pred             HHCCCH
Confidence            877665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.09  E-value=4.2e-10  Score=88.41  Aligned_cols=78  Identities=13%  Similarity=0.125  Sum_probs=74.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATAC   80 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~   80 (374)
                      ..+...|.+++..|+|++|+..|.+++.++|+++.+|+++|.+|..+|++++|+.+|++++.++|++..++..++.+.
T Consensus        38 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~l~  115 (117)
T d1elwa_          38 VLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME  115 (117)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred             hhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHh
Confidence            457889999999999999999999999999999999999999999999999999999999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=8e-10  Score=91.30  Aligned_cols=90  Identities=16%  Similarity=0.210  Sum_probs=79.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+.+.|..++..|++++|+..|.++|+++|++..++..+|.||..+|++++|+.++.+++.++|++..++..++.+...
T Consensus        45 ~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~  124 (159)
T d1a17a_          45 IYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKI  124 (159)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             hhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence            45789999999999999999999999999999999999999999999999999999999999999999999888777543


Q ss_pred             --hcCHHHHHHH
Q 017264           83 --LEEYETAKVA   92 (374)
Q Consensus        83 --lg~~~eA~~~   92 (374)
                        .+.+.+|+..
T Consensus       125 ~~~~~~~~a~~~  136 (159)
T d1a17a_         125 VKQKAFERAIAG  136 (159)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhC
Confidence              4445555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=99.08  E-value=7.3e-10  Score=86.34  Aligned_cols=83  Identities=18%  Similarity=0.160  Sum_probs=78.7

Q ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHH
Q 017264           38 LFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERI  117 (374)
Q Consensus        38 ~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l  117 (374)
                      ..+.+|.++.+.|++.+|+..+++++.++|+++.+|+.+|.++..+|++++|+.+|+++++++|++..+...++.+...+
T Consensus        18 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~   97 (112)
T d1hxia_          18 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   97 (112)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHC
Confidence            35789999999999999999999999999999999999999999999999999999999999999999999999998887


Q ss_pred             Hhh
Q 017264          118 AEE  120 (374)
Q Consensus       118 ~~~  120 (374)
                      +..
T Consensus        98 g~~  100 (112)
T d1hxia_          98 HNA  100 (112)
T ss_dssp             HHH
T ss_pred             CCH
Confidence            765

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=99.06  E-value=5.5e-10  Score=92.03  Aligned_cols=82  Identities=18%  Similarity=0.092  Sum_probs=76.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      .+.+.|..+++.|+|++|+.+|+++|.++|.+..+|+++|.||..+|++++|+.+|.+++.++|++..+...++.+...+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~kl  148 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKL  148 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence            34679999999999999999999999999999999999999999999999999999999999999999999998887666


Q ss_pred             cC
Q 017264           84 EE   85 (374)
Q Consensus        84 g~   85 (374)
                      ++
T Consensus       149 ~~  150 (153)
T d2fbna1         149 KE  150 (153)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=8e-10  Score=88.20  Aligned_cols=84  Identities=17%  Similarity=0.202  Sum_probs=74.9

Q ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHH
Q 017264           37 ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEER  116 (374)
Q Consensus        37 ~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~  116 (374)
                      ..+..+|.+|++.|+|++|+.+|.+++.++|.+..+++++|.+|+.+|+|++|+.+|++++.++|.+......++++...
T Consensus         5 ~~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            45678999999999999999999999999999999999999999999999999999999999999888766666666555


Q ss_pred             HHhh
Q 017264          117 IAEE  120 (374)
Q Consensus       117 l~~~  120 (374)
                      ++..
T Consensus        85 lg~~   88 (128)
T d1elra_          85 IGNS   88 (128)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5543

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=2.8e-09  Score=104.50  Aligned_cols=113  Identities=9%  Similarity=-0.058  Sum_probs=85.3

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhc
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLE   84 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg   84 (374)
                      +.+.|..+...+++..|+..|.+++..++.  .+++++|.++..+++|++|+.+|.+|+.++|+++.+|+++|.++...|
T Consensus       123 ~~~lg~~~~~~~~~~~A~~~~~~al~~~~~--~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~  200 (497)
T d1ya0a1         123 SSQLGIISNKQTHTSAIVKPQSSSCSYICQ--HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKG  200 (497)
T ss_dssp             --------------------CCHHHHHHHH--HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTT
T ss_pred             HHHhHHHHHhCCCHHHHHHHHHHHhCCCHH--HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcC
Confidence            456778888888888888888888887664  678899999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           85 EYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        85 ~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      ++.+|+.+|.+++.++|..+.+...+..+..+...
T Consensus       201 ~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~~~~  235 (497)
T d1ya0a1         201 DHLTTIFYYCRSIAVKFPFPAASTNLQKALSKALE  235 (497)
T ss_dssp             CHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHHHTT
T ss_pred             CHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHhhh
Confidence            99999999999999999999998888887665543

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=4.4e-09  Score=83.31  Aligned_cols=82  Identities=11%  Similarity=0.043  Sum_probs=71.3

Q ss_pred             hHHHHHHHHHHHh---ccCHHHHHHHHHHHHHhCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Q 017264            2 ATDLEKKAKEAFI---DDYFELAYDLYSQAIEISPNS--AELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRK   76 (374)
Q Consensus         2 a~~l~~~g~~~~~---~~~y~~Al~~y~~aL~~~p~~--~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~l   76 (374)
                      ++.+++.|.+++.   .+++.+|+.+|.++|..+|.+  ..+++++|.||.++|+|++|+.+|++++.++|++..+...+
T Consensus        33 ~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~  112 (122)
T d1nzna_          33 KSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQTEPQNNQAKELE  112 (122)
T ss_dssp             HHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHH
Confidence            3567899999986   456678999999999998765  45899999999999999999999999999999999999888


Q ss_pred             HHHHHHh
Q 017264           77 ATACMKL   83 (374)
Q Consensus        77 g~~~~~l   83 (374)
                      +.+.-++
T Consensus       113 ~~I~~~~  119 (122)
T d1nzna_         113 RLIDKAM  119 (122)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8776554

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.82  E-value=9.5e-09  Score=83.73  Aligned_cols=88  Identities=16%  Similarity=0.118  Sum_probs=75.1

Q ss_pred             hHHHHHHHHHHHh----------ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc-----------CHHHHHHHHH
Q 017264            2 ATDLEKKAKEAFI----------DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ-----------NFTEAVADAN   60 (374)
Q Consensus         2 a~~l~~~g~~~~~----------~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~-----------~~~~Al~~~~   60 (374)
                      ++.+.+.|.+++.          .+.+++|+..|++||+++|+++.+|+++|.+|..+|           .|.+|+.+|.
T Consensus        31 ~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~  110 (145)
T d1zu2a1          31 ADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQ  110 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhh
Confidence            3567788888874          455689999999999999999999999999998875           4799999999


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHhcCHHHH
Q 017264           61 RAIELEPSMSKAYWRKATACMKLEEYETA   89 (374)
Q Consensus        61 ~al~l~p~~~~a~~~lg~~~~~lg~~~eA   89 (374)
                      +|+.++|++..++..++.+....+.|.++
T Consensus       111 kal~l~P~~~~~~~~L~~~~ka~~~~~e~  139 (145)
T d1zu2a1         111 QAVDEQPDNTHYLKSLEMTAKAPQLHAEA  139 (145)
T ss_dssp             HHHHHCTTCHHHHHHHHHHHTHHHHHHHH
T ss_pred             cccccCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999887666655554

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.74  E-value=2.5e-08  Score=91.58  Aligned_cols=112  Identities=7%  Similarity=0.037  Sum_probs=100.0

Q ss_pred             HHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccC--HHHHHHHHHHHHHhCCCCHHHH-HHHHHHHHHhcC
Q 017264            9 AKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQN--FTEAVADANRAIELEPSMSKAY-WRKATACMKLEE   85 (374)
Q Consensus         9 g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~--~~~Al~~~~~al~l~p~~~~a~-~~lg~~~~~lg~   85 (374)
                      +..+...+.+.+|+.+|++++..+|.+..++..+|.++..+++  +.+|+..+.+++.++|.+..++ +.+|.++...+.
T Consensus        80 ~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~  159 (334)
T d1dcea1          80 KSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVA  159 (334)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCC
T ss_pred             cchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccc
Confidence            3345556678999999999999999999999999999988865  8999999999999999988876 577899999999


Q ss_pred             HHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHhh
Q 017264           86 YETAKVALEKGASLAPGDSRFTNLIKECEERIAEE  120 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~~  120 (374)
                      +++|+.+++++++++|.+......++.+...++..
T Consensus       160 ~~~Al~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~  194 (334)
T d1dcea1         160 PAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQ  194 (334)
T ss_dssp             HHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCC
T ss_pred             cHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCH
Confidence            99999999999999999999999998888777664

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.73  E-value=3.7e-08  Score=88.38  Aligned_cols=90  Identities=17%  Similarity=0.117  Sum_probs=81.7

Q ss_pred             HHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHH
Q 017264            8 KAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYE   87 (374)
Q Consensus         8 ~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~   87 (374)
                      ++..++..|++++|+..|.++|+.+|.++.++..++.+|+.+|++++|+..++++++++|++..++..++.++...+...
T Consensus         2 q~~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~   81 (264)
T d1zbpa1           2 QWKNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARK   81 (264)
T ss_dssp             CHHHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccH
Confidence            46778999999999999999999999999999999999999999999999999999999999999999999998888887


Q ss_pred             HHHHHHHHHH
Q 017264           88 TAKVALEKGA   97 (374)
Q Consensus        88 eA~~~~~~a~   97 (374)
                      ++...+....
T Consensus        82 ~a~~~~~~~~   91 (264)
T d1zbpa1          82 DFAQGAATAK   91 (264)
T ss_dssp             HHTTSCCCEE
T ss_pred             HHHHHhhhhh
Confidence            7666554433

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.68  E-value=1e-07  Score=74.69  Aligned_cols=84  Identities=18%  Similarity=0.133  Sum_probs=76.2

Q ss_pred             HHHHHHHHHHHHHc---cCHHHHHHHHHHHHHhCCCC-HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHH
Q 017264           36 AELFADRAQASIKL---QNFTEAVADANRAIELEPSM-SKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIK  111 (374)
Q Consensus        36 ~~~~~~ra~~~~~l---~~~~~Al~~~~~al~l~p~~-~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~  111 (374)
                      ....++.|.|+.+.   .+..+|+..++.++..+|.. .+++|.+|++|+++|+|++|+.+++++++++|+|..+.....
T Consensus        35 ~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~  114 (124)
T d2pqrb1          35 IQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKS  114 (124)
T ss_dssp             HHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHH
Confidence            78899999999876   45678999999999999866 589999999999999999999999999999999999999988


Q ss_pred             HHHHHHHh
Q 017264          112 ECEERIAE  119 (374)
Q Consensus       112 ~~~~~l~~  119 (374)
                      .++.++..
T Consensus       115 ~Ie~~~~k  122 (124)
T d2pqrb1         115 MVEDKIQK  122 (124)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhc
Confidence            88888765

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.65  E-value=7.4e-08  Score=87.00  Aligned_cols=102  Identities=17%  Similarity=0.040  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC------HHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCC------C
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNS------AELFADRAQASIK-LQNFTEAVADANRAIELEPS------M   69 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~------~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~------~   69 (374)
                      ..+.+.|+++...|++++|+..|.+++.+.+..      ..++..+|.+|.. +|++++|+..+.+|+.+.+.      .
T Consensus        78 ~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~  157 (290)
T d1qqea_          78 NTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALS  157 (290)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhh
Confidence            345666777777777777777777776664333      4556666666644 57777777777777665321      2


Q ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCCh
Q 017264           70 SKAYWRKATACMKLEEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        70 ~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~  104 (374)
                      ..++.++|.++..+|+|.+|+.+|++++...+.+.
T Consensus       158 ~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~  192 (290)
T d1qqea_         158 NKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNR  192 (290)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCT
T ss_pred             hhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccch
Confidence            44566777777777777777777777777766554

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.59  E-value=6.1e-08  Score=87.56  Aligned_cols=99  Identities=14%  Similarity=0.087  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhC------CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCC------H
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEIS------PNSAELFADRAQASIKLQNFTEAVADANRAIELEPSM------S   70 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~------p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~------~   70 (374)
                      +.+...|+.+...++|++|++.|.+|+.+.      +..+..|.++|.||.++|++++|+..+++++.+.+..      .
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~  117 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA  117 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHH
Confidence            356788999999999999999999999972      2225789999999999999999999999999986543      5


Q ss_pred             HHHHHHHHHHHH-hcCHHHHHHHHHHHHhcCC
Q 017264           71 KAYWRKATACMK-LEEYETAKVALEKGASLAP  101 (374)
Q Consensus        71 ~a~~~lg~~~~~-lg~~~eA~~~~~~a~~l~p  101 (374)
                      .++.++|.+|.. +|++++|+.+|++++.+.+
T Consensus       118 ~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~  149 (290)
T d1qqea_         118 NFKFELGEILENDLHDYAKAIDCYELAGEWYA  149 (290)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHH
Confidence            678899988865 6999999999999988754

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.53  E-value=7.8e-07  Score=81.26  Aligned_cols=95  Identities=13%  Similarity=0.099  Sum_probs=83.6

Q ss_pred             hccC-HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc----------CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264           14 IDDY-FELAYDLYSQAIEISPNSAELFADRAQASIKLQ----------NFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus        14 ~~~~-y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~----------~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      ..+. +++|+..|.++|..+|++..+|..|+.++..++          ++.+|+..+++++..+|++..+|+.+|.++..
T Consensus        40 ~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~  119 (334)
T d1dcea1          40 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPKSYGTWHHRCWLLSR  119 (334)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             hcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHH
Confidence            4444 489999999999999999999999888876654          48899999999999999999999999999988


Q ss_pred             hcC--HHHHHHHHHHHHhcCCCChhHHH
Q 017264           83 LEE--YETAKVALEKGASLAPGDSRFTN  108 (374)
Q Consensus        83 lg~--~~eA~~~~~~a~~l~p~~~~~~~  108 (374)
                      +++  +++|+.++.++++++|.+.....
T Consensus       120 ~~~~~~~~a~~~~~~al~~~~~~~~~~~  147 (334)
T d1dcea1         120 LPEPNWARELELCARFLEADERNFHCWD  147 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             hccccHHHHHHHHHHHHhhCchhhhhhh
Confidence            876  89999999999999998876543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.47  E-value=6e-07  Score=80.41  Aligned_cols=97  Identities=15%  Similarity=-0.009  Sum_probs=85.4

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC------CHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS-----AELFADRAQASIKLQNFTEAVADANRAIELEPS------MSKA   72 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~-----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~------~~~a   72 (374)
                      ...-+|..++..|++++|+.+|.++|...|.+     ..++..+|.+|..+|++++|+..+.+++.+.+.      ...+
T Consensus        14 ~~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~   93 (366)
T d1hz4a_          14 FNALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWS   93 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHH
Confidence            34567999999999999999999999999887     457888999999999999999999999987643      2457


Q ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcC
Q 017264           73 YWRKATACMKLEEYETAKVALEKGASLA  100 (374)
Q Consensus        73 ~~~lg~~~~~lg~~~eA~~~~~~a~~l~  100 (374)
                      ++.++.++...|++..|...+..++.+.
T Consensus        94 ~~~~~~~~~~~~~~~~a~~~~~~al~~~  121 (366)
T d1hz4a_          94 LIQQSEILFAQGFLQTAWETQEKAFQLI  121 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            8889999999999999999999988754

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=1.3e-06  Score=84.99  Aligned_cols=82  Identities=15%  Similarity=0.056  Sum_probs=76.9

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK   82 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~   82 (374)
                      +.+...|..+...++|++|+.+|.+|+.++|++..+|+++|.+|...|++.+|+.+|.+|+.+.|.++.++.+++.++..
T Consensus       153 ~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         153 HCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence            35788999999999999999999999999999999999999999999999999999999999999999999999988865


Q ss_pred             hc
Q 017264           83 LE   84 (374)
Q Consensus        83 lg   84 (374)
                      ..
T Consensus       233 ~~  234 (497)
T d1ya0a1         233 AL  234 (497)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=98.25  E-value=1.3e-06  Score=78.08  Aligned_cols=98  Identities=12%  Similarity=0.001  Sum_probs=85.5

Q ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHHhCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHHhC------CCCHHHH
Q 017264            4 DLEKKAKEAFIDDYFELAYDLYSQAIEISPNS----AELFADRAQASIKLQNFTEAVADANRAIELE------PSMSKAY   73 (374)
Q Consensus         4 ~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~----~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~------p~~~~a~   73 (374)
                      .+...|..+...++++.|+..|.+++...+.+    ...+.++|.+|..+|++++|+..+++++.+.      |....++
T Consensus       215 ~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  294 (366)
T d1hz4a_         215 ANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNL  294 (366)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHH
Confidence            35667889999999999999999999886655    4567789999999999999999999998653      4567799


Q ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHhcCC
Q 017264           74 WRKATACMKLEEYETAKVALEKGASLAP  101 (374)
Q Consensus        74 ~~lg~~~~~lg~~~eA~~~~~~a~~l~p  101 (374)
                      +.+|.+|+.+|++++|+.+|++++.+.+
T Consensus       295 ~~la~~~~~~g~~~~A~~~l~~Al~l~~  322 (366)
T d1hz4a_         295 LLLNQLYWQAGRKSDAQRVLLDALKLAN  322 (366)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHhh
Confidence            9999999999999999999999998754

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.16  E-value=1.4e-05  Score=72.01  Aligned_cols=100  Identities=10%  Similarity=-0.014  Sum_probs=81.7

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHh
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK-LQNFTEAVADANRAIELEPSMSKAYWRKATACMKL   83 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~-l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~l   83 (374)
                      +...++.....++++.|...|.+++...|.+...+...|..... .|+.+.|...|++++...|.++..|..++..+...
T Consensus       137 w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~  216 (308)
T d2onda1         137 YIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHL  216 (308)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHc
Confidence            34666777788888888888888888888888888877766443 57888888888888888888888888899888899


Q ss_pred             cCHHHHHHHHHHHHhcCCCCh
Q 017264           84 EEYETAKVALEKGASLAPGDS  104 (374)
Q Consensus        84 g~~~eA~~~~~~a~~l~p~~~  104 (374)
                      |+++.|...|++++...|.++
T Consensus       217 g~~~~aR~~fe~ai~~~~~~~  237 (308)
T d2onda1         217 NEDNNTRVLFERVLTSGSLPP  237 (308)
T ss_dssp             CCHHHHHHHHHHHHHSSSSCG
T ss_pred             CChHHHHHHHHHHHHhCCCCh
Confidence            999999999999988777554

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.15  E-value=2.1e-06  Score=69.94  Aligned_cols=65  Identities=17%  Similarity=-0.003  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCC-----------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPN-----------SAELFADRAQASIKLQNFTEAVADANRAIELEP   67 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~-----------~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p   67 (374)
                      ..+.+.|.+++..|+|++|+..|+++|.+.+.           ...+++++|.+|..+|++++|+.+|++|+++.|
T Consensus        56 ~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          56 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence            35678999999999999999999999987432           145789999999999999999999999999865

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.14  E-value=7.3e-06  Score=63.89  Aligned_cols=78  Identities=12%  Similarity=-0.031  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHhcc---CHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDD---YFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKAT   78 (374)
Q Consensus         3 ~~l~~~g~~~~~~~---~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~   78 (374)
                      +..|+-|-.+....   +.+.||.++.++++.+|.+. +.++++|.+|+++|+|++|+.+++++|+++|++..+...+-.
T Consensus        36 qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~~L~~~  115 (124)
T d2pqrb1          36 QSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVGALKSM  115 (124)
T ss_dssp             HHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred             chHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHHHHHHH
Confidence            45678888888654   45789999999999998764 799999999999999999999999999999999988765554


Q ss_pred             HH
Q 017264           79 AC   80 (374)
Q Consensus        79 ~~   80 (374)
                      +-
T Consensus       116 Ie  117 (124)
T d2pqrb1         116 VE  117 (124)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=1.1e-05  Score=72.88  Aligned_cols=111  Identities=10%  Similarity=-0.010  Sum_probs=93.4

Q ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHHhCCCCH-HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH-H
Q 017264            5 LEKKAKEAFIDDYFELAYDLYSQAIEISPNSA-ELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACM-K   82 (374)
Q Consensus         5 l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~-~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~-~   82 (374)
                      +...+..+...|+++.|...|.++|...|.+. .++..++.+..+.++++.|...|.+++...|.....+...|...+ .
T Consensus       102 ~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~~~~~~~~~a~~e~~~  181 (308)
T d2onda1         102 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYC  181 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTCCTHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHh
Confidence            34567778889999999999999999988764 478888999999999999999999999999999999998888754 4


Q ss_pred             hcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHH
Q 017264           83 LEEYETAKVALEKGASLAPGDSRFTNLIKECEE  115 (374)
Q Consensus        83 lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~  115 (374)
                      .|+.+.|...|++++...|++..+...+.....
T Consensus       182 ~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~  214 (308)
T d2onda1         182 SKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLS  214 (308)
T ss_dssp             SCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            689999999999999999998876655555433

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.00  E-value=1.1e-05  Score=71.80  Aligned_cols=76  Identities=12%  Similarity=0.039  Sum_probs=67.0

Q ss_pred             HHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCCChhHHHHHHHHHHHHHh
Q 017264           44 QASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMKLEEYETAKVALEKGASLAPGDSRFTNLIKECEERIAE  119 (374)
Q Consensus        44 ~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~lg~~~eA~~~~~~a~~l~p~~~~~~~~~~~~~~~l~~  119 (374)
                      .-+++.|++++|+..++++++.+|++..++..+|.+|+..|++++|+..|+++++++|++......+..+......
T Consensus         4 ~~aL~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~   79 (264)
T d1zbpa1           4 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQA   79 (264)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccc
Confidence            3456789999999999999999999999999999999999999999999999999999998877777666544333

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.95  E-value=9.6e-05  Score=64.37  Aligned_cols=96  Identities=13%  Similarity=0.107  Sum_probs=84.1

Q ss_pred             hHHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHH
Q 017264            2 ATDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKA   77 (374)
Q Consensus         2 a~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg   77 (374)
                      ++++++.|..++.++||.+|+++|.+|.+.  .+..+++.+|.+|..    ..++..|+..+..+....  ++.+.+.+|
T Consensus         2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~--g~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~--~~~a~~~l~   77 (265)
T d1ouva_           2 PKELVGLGAKSYKEKDFTQAKKYFEKACDL--KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc--ccchhhccc
Confidence            468899999999999999999999999875  578999999999988    679999999999988665  778889999


Q ss_pred             HHHHH----hcCHHHHHHHHHHHHhcCC
Q 017264           78 TACMK----LEEYETAKVALEKGASLAP  101 (374)
Q Consensus        78 ~~~~~----lg~~~eA~~~~~~a~~l~p  101 (374)
                      .++..    ...+..|...|+.+....+
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~  105 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKY  105 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhh
Confidence            88875    5788999999999987655

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=5.2e-05  Score=63.13  Aligned_cols=61  Identities=11%  Similarity=-0.010  Sum_probs=57.1

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAI   63 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al   63 (374)
                      ..+...|..+...|+|.+|+..+.++|..+|.+..+|..++.+|..+|++.+|++.|+++.
T Consensus        68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~  128 (179)
T d2ff4a2          68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVK  128 (179)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            3567889999999999999999999999999999999999999999999999999888873

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.69  E-value=0.00028  Score=55.23  Aligned_cols=84  Identities=14%  Similarity=0.049  Sum_probs=65.4

Q ss_pred             hccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcC
Q 017264           14 IDDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEE   85 (374)
Q Consensus        14 ~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~----lg~   85 (374)
                      ...++++|+.+|.++.+.  .++.+++.+|.+|..    ..++.+|+.+|+++....  ++.+.+++|.+|..    ..+
T Consensus        35 ~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          35 SQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN--DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             TTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC--cchHHHHHHHHHHcCCccCCC
Confidence            445788888888888774  567888888888876    467888888888888764  67888888888876    567


Q ss_pred             HHHHHHHHHHHHhcCC
Q 017264           86 YETAKVALEKGASLAP  101 (374)
Q Consensus        86 ~~eA~~~~~~a~~l~p  101 (374)
                      +.+|+.+|+++.++..
T Consensus       111 ~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_         111 EKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHCCC
Confidence            8888888888877654

>d1shsa_ b.15.1.1 (A:) Small heat shock protein {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=97.48  E-value=0.00024  Score=54.43  Aligned_cols=78  Identities=13%  Similarity=0.163  Sum_probs=66.2

Q ss_pred             ccccccCCeEEEEEEeCCCCCCceEEEEeeeEEEEEEEcC-----C-----------CCeeeeccccccccccCceEEEE
Q 017264          176 HEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQILSVSIDVP-----G-----------EEAYHFQPRLFGKIIPAKCRYEV  239 (374)
Q Consensus       176 ~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~~l~v~~~~~-----~-----------~~~y~~~~~L~~~I~p~~s~~~v  239 (374)
                      ++.+++++.+.|.+.++|+.++++.|.+.++.|.|+....     .           ...|...+.|...|+++..+...
T Consensus        13 vdi~e~~~~~~i~~~lPG~~~edi~v~v~~~~l~I~~~~~~~~~~~~~~~~~~~~~~~~~f~r~~~lP~~vd~~~i~A~~   92 (115)
T d1shsa_          13 ISIIEGDQHIKVIAWLPGVNKEDIILNAVGDTLEIRAKRSPLMITESERIIYSEIPEEEEIYRTIKLPATVKEENASAKF   92 (115)
T ss_dssp             EEEEECSSEEEEEEECTTCCGGGEEEEEETTEEEEEEECCCCCCCTTCEEEEECSCCCCEEEEEEECSSCBCGGGCEEEE
T ss_pred             eEEEEcCCEEEEEEECCCCCHHHEEEEEECCEEEEEEEeccccccccccEEEEeeecccceEEEEecCCceeecceEEEE
Confidence            6899999999999999999999999999999999986431     1           12355567888999999999999


Q ss_pred             cCcEEEEEEeecCC
Q 017264          240 LSTKVEIRLAKAEP  253 (374)
Q Consensus       240 ~~~kiei~L~K~~~  253 (374)
                      ....++|+|.|.+.
T Consensus        93 ~nGvL~I~lpK~~~  106 (115)
T d1shsa_          93 ENGVLSVILPKAES  106 (115)
T ss_dssp             ETTEEEEEEEBCGG
T ss_pred             ECCEEEEEEEeCCC
Confidence            99999999999753

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=97.40  E-value=0.00083  Score=58.08  Aligned_cols=95  Identities=17%  Similarity=0.120  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHh----ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHHhCCCCHHHHHH
Q 017264            4 DLEKKAKEAFI----DDYFELAYDLYSQAIEISPNSAELFADRAQASIK----LQNFTEAVADANRAIELEPSMSKAYWR   75 (374)
Q Consensus         4 ~l~~~g~~~~~----~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~----l~~~~~Al~~~~~al~l~p~~~~a~~~   75 (374)
                      .+...|..++.    ..+...++..+..+.+  ..++.+++++|.+|..    .+++.+|+.+|.++.+++  ++.++++
T Consensus       144 ~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~--~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~  219 (265)
T d1ouva_         144 GCTILGSLYDAGRGTPKDLKKALASYDKACD--LKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFN  219 (265)
T ss_dssp             HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHH
T ss_pred             hhhhhhhhhccCCCcccccccchhhhhcccc--ccccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHH
Confidence            34556666664    5667788888888776  4578999999999987    678999999999998874  7889999


Q ss_pred             HHHHHHH----hcCHHHHHHHHHHHHhcCCC
Q 017264           76 KATACMK----LEEYETAKVALEKGASLAPG  102 (374)
Q Consensus        76 lg~~~~~----lg~~~eA~~~~~~a~~l~p~  102 (374)
                      +|.+|..    .+++.+|+.+|+++..+...
T Consensus       220 LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         220 LGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            9999986    45899999999999887753

>d1gmea_ b.15.1.1 (A:) Small heat shock protein {Wheat (Triticum aestivum) [TaxId: 4565]}

class: All beta proteins
fold: HSP20-like chaperones
superfamily: HSP20-like chaperones
family: HSP20
domain: Small heat shock protein
species: Wheat (Triticum aestivum) [TaxId: 4565]

Probab=97.31  E-value=0.00056  Score=54.95  Aligned_cols=79  Identities=19%  Similarity=0.267  Sum_probs=63.5

Q ss_pred             CccccccCCeEEEEEEeCCCCCCceEEEEeee-EEEEEEEcC-----CCC----------eeeeccccccccccCceEEE
Q 017264          175 RHEFYQKPEEVVVTVFAKGIPAKNVTVDFGEQ-ILSVSIDVP-----GEE----------AYHFQPRLFGKIIPAKCRYE  238 (374)
Q Consensus       175 r~~W~Qt~~~V~i~i~~k~~~~~~v~v~~~~~-~l~v~~~~~-----~~~----------~y~~~~~L~~~I~p~~s~~~  238 (374)
                      +.+|+++++.++|.+.++|+.++++.|+++.+ .|.+.....     .+.          .|.-.+.|...|+++..+.+
T Consensus        44 ~~dv~e~~~~~~i~~~lPG~~~edi~v~v~~~~~l~i~~~~~~~~~~~~~~~~~~e~~~~~f~r~~~LP~~vd~~~i~A~  123 (150)
T d1gmea_          44 RMDWKETPEAHVFKADLPGVKKEEVKVEVEDGNVLVVSGERTKEKEDKNDKWHRVERSSGKFVRRFRLLEDAKVEEVKAG  123 (150)
T ss_dssp             CEEEEECSSEEEEEEECTTCCGGGEEEEEETTTEEEEEECCCCCCCCTTCEEEECCCCCCCEEEEEECSSCCCGGGCEEE
T ss_pred             ceeEEECCCEEEEEEEeCCCccCCEEEEEEEccceeEEEEEecccccccceeeeeeeccceEEEEEECCCCeeeceeEEE
Confidence            67999999999999999999999999999864 566665321     111          24445789999999998888


Q ss_pred             EcCcEEEEEEeecCC
Q 017264          239 VLSTKVEIRLAKAEP  253 (374)
Q Consensus       239 v~~~kiei~L~K~~~  253 (374)
                      .....++|+|.|.+.
T Consensus       124 ~~nGvL~I~lpK~~~  138 (150)
T d1gmea_         124 LENGVLTVTVPKAEV  138 (150)
T ss_dssp             EETTEEEEEEECCCC
T ss_pred             EECCEEEEEEEcCCc
Confidence            899999999999753

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.14  E-value=0.0017  Score=50.37  Aligned_cols=91  Identities=13%  Similarity=0.016  Sum_probs=71.4

Q ss_pred             ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----hcCHHHHH
Q 017264           15 DDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQNFTEAVADANRAIELEPSMSKAYWRKATACMK----LEEYETAK   90 (374)
Q Consensus        15 ~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~~~~~Al~~~~~al~l~p~~~~a~~~lg~~~~~----lg~~~eA~   90 (374)
                      .+|+++|+.+|.++.+..  ++.+++.++.  ....++++|+..+.++...  +++.+++.+|.+|..    ..++.+|+
T Consensus         6 ~kd~~~A~~~~~kaa~~g--~~~a~~~l~~--~~~~~~~~a~~~~~~aa~~--g~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           6 KKDLKKAIQYYVKACELN--EMFGCLSLVS--NSQINKQKLFQYLSKACEL--NSGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHHHTT--CTTHHHHHHT--CTTSCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCC--Chhhhhhhcc--ccccCHHHHHHHHhhhhcc--cchhhhhhHHHhhhhccccchhhHHHH
Confidence            468999999999999875  4455566654  3457899999999999876  588999999999986    67799999


Q ss_pred             HHHHHHHhcCCCChhHHHHHHHH
Q 017264           91 VALEKGASLAPGDSRFTNLIKEC  113 (374)
Q Consensus        91 ~~~~~a~~l~p~~~~~~~~~~~~  113 (374)
                      .+|+++.+..  ++.....+..+
T Consensus        80 ~~~~~aa~~g--~~~a~~~Lg~~  100 (133)
T d1klxa_          80 QYYSKACGLN--DQDGCLILGYK  100 (133)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHhhhhccC--cchHHHHHHHH
Confidence            9999998764  45555555544

>d2cfua2 d.157.1.13 (A:20-524) Alkylsulfatase SdsA1 {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a+b)
fold: Metallo-hydrolase/oxidoreductase
superfamily: Metallo-hydrolase/oxidoreductase
family: Alkylsulfatase-like
domain: Alkylsulfatase SdsA1
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=85.89  E-value=0.67  Score=43.58  Aligned_cols=48  Identities=13%  Similarity=0.187  Sum_probs=30.0

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcc
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEISPNSAELFADRAQASIKLQ   50 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~~p~~~~~~~~ra~~~~~l~   50 (374)
                      +.+..+|..++..|+|.-|+++.+.++..+|++..+...+|.+|.+++
T Consensus       431 ~~~~~~a~~~~~~g~~~wa~~l~~~~~~a~p~~~~ar~l~a~~~~~l~  478 (505)
T d2cfua2         431 ERLLEQARASYARGEYRWVVEVVNRLVFAEPDNRAARELQADALEQLG  478 (505)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHH
Confidence            345566666666666666666666666666666666666666665554

>d1wfda_ a.7.14.1 (A:) Hypothetical protein 1500032H18Rik {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: Spectrin repeat-like
superfamily: MIT domain
family: MIT domain
domain: Hypothetical protein 1500032H18Rik
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=83.15  E-value=0.89  Score=32.25  Aligned_cols=29  Identities=21%  Similarity=0.305  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHhccCHHHHHHHHHHHHHh
Q 017264            3 TDLEKKAKEAFIDDYFELAYDLYSQAIEI   31 (374)
Q Consensus         3 ~~l~~~g~~~~~~~~y~~Al~~y~~aL~~   31 (374)
                      -.+..+|..+-..|+|++|+.+|.++|+.
T Consensus        16 ~~l~~~Av~~D~~g~y~eA~~~Y~~aie~   44 (93)
T d1wfda_          16 VAVLKRAVELDAESRYQQALVCYQEGIDM   44 (93)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34566677777777777777777776554