Citrus Sinensis ID: 017269

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSDTATANYFSQFHVGGRRLY
Secondary Structure (PSIPRED)
cccccccEEEccccccEEccccccccccccccccccEEEcccccccccccccHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHcccccccccccccHHHHHccccEEEcccccccccccEEEccccccccccEEEccccccccccHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccEEEEEccEEEEEccccccccEccccccccEEEcccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccccccccccccccHEEEccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccHHHHHcccEEEEEHHHccccccccccHHHccccHHHcccccccccccccEcHHHHHccccccEccccccccccccccccccccccccEEEEEcccccEEEEEcccccccccccccEEEEEEccccccccccccEEEEccccccccccccHHHHHHHHHHHHcccccccccccccccccccccccEEEcccccccHcHcccccccccccc
Coil and Loop (DISEMBL)
MSSIGLSYWCYRCNRIIriqsrtedaivcpdchtgfiEQIEtiqrpsnerypaaemyledtqnpetfpttrfgrtrrnggdrspfnpvivlrgpqtpdsgggnegtamergnfelfyddatgaglrplpasmsdflmgsgfDRVLDQltqldfngvtrfvnppaskaaiesmpvVTIAeshvakeshcavckepfqlnsearempckhiyhgecilpwlsmrnscplcrrelpneandrgsnvgggpdetlgltiwrlpgggfavgrfngsrraaerelpvvftemdggfnapigaprriswvpsrrraregnGFARAFRGFTSLlgrirlptsrataefnrrspfldviygrssdtataNYFSqfhvggrrly
Flexible Loop (DISEMBL)
mssiglsyWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYledtqnpetfpttrfgrtrrnggdrspfnpvivlrgpqtpdsgggnEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPneandrgsnvgggPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTemdggfnapigaprriswvpsrrraregngfarafrgftsllgrirlptsrataefnrrspfLDVIYGRssdtatanyfsqfhvggrrly
Low Complexity Region (SEG)
MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPETFPttrfgrtrrnggdrSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSDTATANYFSQFHVGGRRLY
Disordered region (IsUnstruct)
***IGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETI********************************************************************NFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRR******************ETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSDTATANYFSQFHV******
Disordered Region (DISOPRED)
****GLS*WCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQ***********************NPETFPTTRFG**************************************N*******************MSDFLMGSGFDRVLDQLTQ*****************AIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL***************************************************************************************************************************************V******
Disordered Region (DISEMBL)
MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSDTATANYFSQFHVGGRRLY
Disordered Region (DISPRO)
*****LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIET*************************************************************EGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL****************ETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPS*******NGFARAFRGFTSLLG**************************SSDTATANYFSQFHVGGRRL*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSDTATANYFSQFHVGGRRLY
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
P0CH30	338	E3 ubiquitin-protein liga	N/A	no	0.574	0.636	0.313	2e-31
Q8LPN7	328	E3 ubiquitin-protein liga	no	no	0.590	0.673	0.292	2e-27
Q7T0Q3	312	RING finger protein 126-A	N/A	no	0.582	0.698	0.271	3e-18
Q6DIP3	311	RING finger protein 126 O	no	no	0.577	0.694	0.262	5e-18
Q6IRP0	312	RING finger protein 126-B	N/A	no	0.566	0.679	0.276	6e-18
Q9BV68	326	RING finger protein 126 O	yes	no	0.566	0.650	0.271	6e-18
Q7ZW78	156	E3 ubiquitin-protein liga	yes	no	0.235	0.564	0.465	6e-18
Q91YL2	313	RING finger protein 126 O	yes	no	0.582	0.696	0.272	8e-18
Q9Y4L5	304	E3 ubiquitin-protein liga	no	no	0.553	0.680	0.283	1e-17
Q0II22	313	RING finger protein 126 O	no	no	0.582	0.696	0.267	2e-17

>sp|P0CH30|RING1_GOSHI E3 ubiquitin-protein ligase RING1 OS=Gossypium hirsutum GN=RING1 PE=2 SV=1

 Score =  137 bits (344), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 84/268 (31%), Positives = 135/268 (50%), Gaps = 53/268 (19%)

Query: 8   YWCYRCNRIIRIQ-SRTEDAIVCPDCHTGFIEQIET--------IQRPSNERYPAAEMYL 58
           ++CY+CNR + +  S       CP C+ GF+E+ +            P+    P  +++L
Sbjct: 23  FFCYQCNRTVNVTISPPSSDPTCPICNEGFLEEYDNPNPNQGSGFLNPNPNSIPFHDLFL 82

Query: 59  E---------------------------DTQNPETFPTTRFGRTRRNGGDRSPFNPVIVL 91
                                       D  NP     TR GR     GD   F+P   +
Sbjct: 83  TLSDPFASLLPLLFPSSSSTTTSSSASIDPNNPSLSGPTRSGR-----GDPFAFDPFTFI 137

Query: 92  RGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQL 151
              Q   +   + G  +E     +  ++ +  G R LPA++ D+ +G G ++++ QL + 
Sbjct: 138 ---QNHLNDLRSSGAQIEF----VIQNNPSDQGFR-LPANIGDYFIGPGLEQLIQQLAEN 189

Query: 152 DFNGVTRFVNPPASKAAIESMPVVTIAESHVAKE-SHCAVCKEPFQLNSEAREMPCKHIY 210
           D N   R+  PPASK+AIE++P+V I +S++  E + CAVC + F+  +EA++MPCKH+Y
Sbjct: 190 DPN---RYGTPPASKSAIEALPLVNITKSNLNSEFNQCAVCMDDFEEGTEAKQMPCKHLY 246

Query: 211 HGECILPWLSMRNSCPLCRRELPNEAND 238
           H +C+LPWL + NSCP+CR ELP +  D
Sbjct: 247 HKDCLLPWLELHNSCPVCRHELPTDDPD 274

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.
Gossypium hirsutum (taxid: 3635)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q8LPN7|RNG1L_ARATH E3 ubiquitin-protein ligase RING1-like OS=Arabidopsis thaliana GN=At3g19950 PE=2 SV=1

 Score =  124 bits (310), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 75/256 (29%), Positives = 127/256 (49%), Gaps = 35/256 (13%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQ---------RPSNERYPAAEMYL 58
           ++CY+CN+ + I   +     CP C+ GF+E+ E              S+  +P A+ + 
Sbjct: 21  FFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPF- 79

Query: 59  EDTQNPETFPTTRFGRTRR--NGGD-RSPFNPVIVLRG---PQTPDSGGGNEGTAMER-- 110
                  T     FG +    +G D  S F P +  +     Q P S   +  T ++   
Sbjct: 80  ------STLLPLIFGSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHL 133

Query: 111 -------GNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPP 163
                   +FE   ++        +P +  D+  G G ++++ QL + D N   R+  PP
Sbjct: 134 QTLRSSGTHFEFVIENHPSDPGNRMPGNFGDYFFGPGLEQLIQQLAENDPN---RYGTPP 190

Query: 164 ASKAAIESMPVVTIAESHVAKE-SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR 222
           ASK+AI+++P V + +  +  E + CAVC + F+  S+ ++MPCKH++H +C+LPWL + 
Sbjct: 191 ASKSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELH 250

Query: 223 NSCPLCRRELPNEAND 238
           NSCP+CR ELP +  D
Sbjct: 251 NSCPVCRFELPTDDPD 266

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates. Promotes polyubiquitination of target proteins.

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q7T0Q3|R126A_XENLA RING finger protein 126-A OS=Xenopus laevis GN=rnf126-a PE=2 SV=1

 Score = 93.2 bits (230), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 73/269 (27%), Positives = 110/269 (40%), Gaps = 51/269 (18%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI-ETI---------------QRPSNERY 51
           Y+C+ C     I  R  +   CP C +GFIE++ ET                 RPS E  
Sbjct: 11  YFCHSC--TAEITPRLPE-YTCPRCDSGFIEELPETSRNSENNSSNNSRTDQNRPSFENL 67

Query: 52  PAAEMYLEDTQNPETF------------------PTTRFGRTRRNGGDRSPFNPVIVLRG 93
            +A+  L       TF                    TR G +RR    R  +        
Sbjct: 68  ESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEETRDGESRREHQSRQRYGARQPRAR 127

Query: 94  PQTPDSGGGNEGTAMERGNFELFYDD------ATGAGLRP---LPASMSDFLMGS-GFDR 143
             T  + G NEG     G  +   +        +  G+ P   L ++  D+  G+ G D 
Sbjct: 128 LSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLDT 187

Query: 144 VLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEARE 203
           ++ QL     N       PPA    I+++P + I E HV     C VCKE + +    R+
Sbjct: 188 IITQL----LNQFENTGPPPADNEKIQALPTIQITEEHVGSGLECPVCKEDYTVGECVRQ 243

Query: 204 MPCKHIYHGECILPWLSMRNSCPLCRREL 232
           +PC H++H +CI+PWL   ++CP+CR+ L
Sbjct: 244 LPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272

Xenopus laevis (taxid: 8355)

>sp|Q6DIP3|RN126_XENTR RING finger protein 126 OS=Xenopus tropicalis GN=rnf126 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 71/270 (26%), Positives = 109/270 (40%), Gaps = 54/270 (20%)

Query: 8   YWCYRCNR--IIRIQSRTEDAIVCPDCHTGFIEQIETIQ---------------RPSNER 50
           Y+C+ C    I R+   T     CP C +GFIE++   +               RPS E 
Sbjct: 11  YFCHSCTAEIIPRLPEYT-----CPRCDSGFIEELPETRNSENNSSNNSGTDQNRPSFEN 65

Query: 51  YPAAEMYLEDTQNPETF------------------PTTRFGRTRRNGGDRSPFNPVIVLR 92
             +A+  L       TF                     R G +RR    R  +       
Sbjct: 66  LESAQFTLPSGYGQVTFGIFNEGLDFPIFGTSGPVEEPRDGESRREHQSRQRYGARQPRA 125

Query: 93  GPQTPDSGGGNEGTAMERGNFELFYDD------ATGAGLRP---LPASMSDFLMGS-GFD 142
              T  + G NEG     G  +   +        +  G+ P   L ++  D+  G+ G D
Sbjct: 126 RLSTRRAAGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWGANGLD 185

Query: 143 RVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAR 202
            ++ QL     N       PPA    I+++P + I E HV     C VCKE + +    R
Sbjct: 186 TIITQL----LNQFENTGPPPADTEKIQALPTIQITEEHVGSGLECPVCKEDYTVGESVR 241

Query: 203 EMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           ++PC H++H +CI+PWL   ++CP+CR+ L
Sbjct: 242 QLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 271

Xenopus tropicalis (taxid: 8364)

>sp|Q6IRP0|R126B_XENLA RING finger protein 126-B OS=Xenopus laevis GN=rnf126-b PE=2 SV=1

 Score = 92.4 bits (228), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 76/275 (27%), Positives = 112/275 (40%), Gaps = 63/275 (22%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI-ETI---------------QRPSNERY 51
           Y+C+ C     I  R  +   CP C +GFIE++ ET                 RPS E  
Sbjct: 11  YFCHSC--TAEITPRLPE-YTCPRCDSGFIEELPETSRNSESNSSNNSGTDQNRPSFENI 67

Query: 52  PAAEMYLEDTQNPETF------------------PTTRFGRTRRNG------GDRSPFNP 87
            +A+  L       TF                    TR G +RR        G R P   
Sbjct: 68  ESAQFTLPSGYGQVTFGIFNEGLDFPMFGTSGPVEETRDGESRREHQSRQRYGARQPRAR 127

Query: 88  VIVLRGPQTPDSGGGNEGTAMERGNFELFYDD------ATGAGLRP---LPASMSDFLMG 138
           +   RG       G NEG     G  +   +        +  G+ P   L ++  D+  G
Sbjct: 128 MSTRRG------AGRNEGVPTLEGIIQQLVNGIIAPTAMSNLGVGPWGVLHSNPMDYAWG 181

Query: 139 S-GFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQL 197
           + G D ++ QL     N       PPA    I+++P + I E HV     C VCKE + +
Sbjct: 182 ANGLDTIITQL----LNQFENTGPPPADTDKIQALPTIQITEEHVGFGLECPVCKEDYTV 237

Query: 198 NSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
               R++PC H++H +CI+PWL   ++CP+CR+ L
Sbjct: 238 GESVRQLPCNHLFHNDCIIPWLEQHDTCPVCRKSL 272

Xenopus laevis (taxid: 8355)

>sp|Q9BV68|RN126_HUMAN RING finger protein 126 OS=Homo sapiens GN=RNF126 PE=1 SV=1

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 75/276 (27%), Positives = 113/276 (40%), Gaps = 64/276 (23%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQR-----------PSNERYPAAEM 56
           Y+C+ C+  + I  R  D I CP C +GFIE++    R           P+++  P  E 
Sbjct: 11  YFCHCCS--VEIVPRLPDYI-CPRCESGFIEELPEETRSTENGSAPSTAPTDQSRPPLEH 67

Query: 57  Y------------------LEDTQNPETFPT--------------TRFGRTRRNGGDRSP 84
                               +D+    TFP                R   +R   G R P
Sbjct: 68  VDQHLFTLPQGYGQFAFGIFDDSFEIPTFPPGAQADDGRDPESRRERDHPSRHRYGARQP 127

Query: 85  FNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYD----DATGAGLRP---LPASMSDFLM 137
              +   R      + G +EG     G  +   +     AT   L P   L ++  D+  
Sbjct: 128 RARLTTRR------ATGRHEGVPTLEGIIQQLVNGIITPATIPSLGPWGVLHSNPMDYAW 181

Query: 138 GS-GFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQ 196
           G+ G D ++ QL     N       PPA K  I+++P V + E HV     C VCK+ + 
Sbjct: 182 GANGLDAIITQL----LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYA 237

Query: 197 LNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           L    R++PC H++H  CI+PWL   +SCP+CR+ L
Sbjct: 238 LGERVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 273

Homo sapiens (taxid: 9606)

>sp|Q7ZW78|RN181_DANRE E3 ubiquitin-protein ligase RNF181 OS=Danio rerio GN=rnf181 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 41/88 (46%), Positives = 54/88 (61%)

Query: 151 LDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIY 210
            D +   + + PPA+KA ++S+PVV I+     K   C VC   F+     REMPCKH++
Sbjct: 42  FDLSDWDQRLPPPAAKAVVQSLPVVIISPEQADKGVKCPVCLLEFEEQESVREMPCKHLF 101

Query: 211 HGECILPWLSMRNSCPLCRRELPNEAND 238
           H  CILPWL+  NSCPLCR ELP +  D
Sbjct: 102 HTGCILPWLNKTNSCPLCRLELPTDNAD 129

E3 ubiquitin-protein ligase which accepts ubiquitin from an E2 ubiquitin-conjugating enzyme in the form of a thioester and then directly transfers the ubiquitin to targeted substrates.

Danio rerio (taxid: 7955)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q91YL2|RN126_MOUSE RING finger protein 126 OS=Mus musculus GN=Rnf126 PE=1 SV=1

 Score = 91.7 bits (226), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 74/272 (27%), Positives = 112/272 (41%), Gaps = 54/272 (19%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI-ETIQRPSNERYPA------------- 53
           Y+C+ C+  + I  R  D I CP C +GFIE++ E  +   N   P+             
Sbjct: 11  YFCHCCS--VEIVPRLPDYI-CPRCESGFIEELPEETRNTENGSAPSTAPTDQNRQPFEN 67

Query: 54  AEMYL---------------EDTQNPETFPT--------------TRFGRTRRNGGDRSP 84
            + +L               +D+    TFP                R  ++R   G R P
Sbjct: 68  VDQHLFTLPQGYSQFAFGIFDDSFEIPTFPPGAQADDGRDPESRREREHQSRHRYGARQP 127

Query: 85  FNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRP---LPASMSDFLMGS-G 140
              +   R     +     EG   +  N  +        GL P   L ++  D+  G+ G
Sbjct: 128 RARLTARRATGRHEGVPTLEGIIQQLVNGIISPAAVPSLGLGPWGVLHSNPMDYAWGANG 187

Query: 141 FDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSE 200
            D ++ QL     N       PPA K  I+++P V + E HV     C VCKE + L   
Sbjct: 188 LDTIITQL----LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKEDYALGES 243

Query: 201 AREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
            R++PC H++H  CI+PWL   +SCP+CR+ L
Sbjct: 244 VRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSL 275

Mus musculus (taxid: 10090)

>sp|Q9Y4L5|RN115_HUMAN E3 ubiquitin-protein ligase RNF115 OS=Homo sapiens GN=RNF115 PE=1 SV=2

 Score = 90.9 bits (224), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 72/254 (28%), Positives = 107/254 (42%), Gaps = 47/254 (18%)

Query: 28  VCPDCHTGFIEQIET-----------IQRPSNERYPAAEMYLEDTQNPETF-------PT 69
           +CP C +GFIE++             I   +   +     +L+ T   + F       P 
Sbjct: 37  ICPRCESGFIEEVTDDSSFLGGGGSRIDNTTTTHFAELWGHLDHTMFFQDFRPFLSSSPL 96

Query: 70  TRFGRTRRNGGD-----------RSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYD 118
            +  R    G             R P       RG   PD     EG  + +  F  F+ 
Sbjct: 97  DQDNRANERGHQTHTDFWGARPPRLPLGRRYRSRGSSRPDRSPAIEG--ILQHIFAGFFA 154

Query: 119 DATGAGLRPLPASMS--------DFLMG-SGFDRVLDQLT-QLDFNGVTRFVNPPASKAA 168
           ++   G  P P S S        D+  G +G D ++ QL  QL+  G      PPA K  
Sbjct: 155 NSAIPG-SPHPFSWSGMLHSNPGDYAWGQTGLDAIVTQLLGQLENTGP-----PPADKEK 208

Query: 169 IESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLC 228
           I S+P VT+ +  V     C VCKE + +  E R++PC H +H  CI+PWL + ++CP+C
Sbjct: 209 ITSLPTVTVTQEQVDMGLECPVCKEDYTVEEEVRQLPCNHFFHSSCIVPWLELHDTCPVC 268

Query: 229 RRELPNEANDRGSN 242
           R+ L  E + R S 
Sbjct: 269 RKSLNGEDSTRQSQ 282

Acts as an E2-dependent E3 ubiquitin-protein ligase. May be involved in endocytic trafficking.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q0II22|RN126_BOVIN RING finger protein 126 OS=Bos taurus GN=RNF126 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 73/273 (26%), Positives = 108/273 (39%), Gaps = 55/273 (20%)

Query: 8   YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI-ETIQRPSNERYPAAEMYLEDTQNP-- 64
           Y+C+ C+  + I  R  D I CP C +GFIE++ E  +   N   P+     +  Q P  
Sbjct: 11  YFCHCCS--VEIVPRLPDYI-CPRCESGFIEELPEETRSAENGSAPSTASADQSRQQPFE 67

Query: 65  ---------------------------ETFPT--------------TRFGRTRRNGGDRS 83
                                       TFP                R   +R   G R 
Sbjct: 68  NVDQPLFTLPQGYGHFAFGIFDDSFEIPTFPPGAQADDSRDPESRREREQHSRHRYGARQ 127

Query: 84  PFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLRP---LPASMSDFLMGS- 139
           P   +   R     +     EG   +  N  +        GL P   L ++  D+  G+ 
Sbjct: 128 PRARLTARRATGRHEGVPTLEGIIQQLVNGIITPATIPNLGLGPWGVLHSNPMDYAWGAN 187

Query: 140 GFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNS 199
           G D ++ QL     N       PPA K  I+++P V + E HV     C VCK+ + L  
Sbjct: 188 GLDAIITQL----LNQFENTGPPPADKEKIQALPTVPVTEEHVGSGLECPVCKDDYGLGE 243

Query: 200 EAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
             R++PC H++H  CI+PWL   +SCP+CR+ L
Sbjct: 244 HVRQLPCNHLFHDGCIVPWLEQHDSCPVCRKSL 276

Bos taurus (taxid: 9913)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
147861903	364	hypothetical protein VITISV_000345 [Viti	0.938	0.964	0.588	1e-108
225440416	365	PREDICTED: E3 ubiquitin-protein ligase R	0.938	0.961	0.588	1e-107
147806280	1218	hypothetical protein VITISV_022309 [Viti	0.850	0.261	0.568	7e-99
255581502	356	zinc finger protein, putative [Ricinus c	0.885	0.929	0.560	1e-97
225434879	388	PREDICTED: E3 ubiquitin-protein ligase R	0.850	0.819	0.568	1e-97
356537930	393	PREDICTED: E3 ubiquitin-protein ligase R	0.820	0.781	0.550	4e-96
224090757	311	predicted protein [Populus trichocarpa]	0.751	0.903	0.598	5e-96
14719329	386	putative RING-H2 finger protein [Oryza s	0.834	0.808	0.561	1e-91
357472841	369	RING finger protein [Medicago truncatula	0.834	0.845	0.555	2e-91
449450754	378	PREDICTED: E3 ubiquitin-protein ligase R	0.826	0.817	0.568	8e-91

>gi|147861903|emb|CAN82964.1| hypothetical protein VITISV_000345 [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 213/362 (58%), Positives = 265/362 (73%), Gaps = 11/362 (3%)

Query: 1   MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYP-AAEMYLE 59
           M++ G S+WCYRCNR IR+ +  +DAI+CPDC +GF+EQI  + R    R    + MYLE
Sbjct: 1   MAASGSSFWCYRCNRFIRVWA--QDAILCPDCGSGFVEQINNLSRSPRRRRLPGSAMYLE 58

Query: 60  DTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDD 119
           +    +  P  R  R RR+GGDRS FNPVIVLRG    +   G   T+ ERGNFEL+YDD
Sbjct: 59  NRNALDQDPVPRIRRARRSGGDRSLFNPVIVLRGSADVNGSEGGG-TSGERGNFELYYDD 117

Query: 120 ATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAE 179
            TG+GLRPLPAS+S+FLMGSGFDR+LDQL QL+ NG  R  +PPASKAA+ES+P + I  
Sbjct: 118 GTGSGLRPLPASVSEFLMGSGFDRLLDQLAQLEINGAGRCEHPPASKAAVESLPTIKIVA 177

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 239
           SHV  ESHCAVCKEPF+L+SEARE+PCKHIYH +CILPWLS+RNSCP+CR ELP ++++ 
Sbjct: 178 SHVLSESHCAVCKEPFELDSEARELPCKHIYHSDCILPWLSLRNSCPVCRHELPTDSHEG 237

Query: 240 GS-----NVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPI 294
           GS     + G   ++ +GLTIWRLPGGGFAVGRF G R+AAERELPVVFTEMDGGFN P 
Sbjct: 238 GSSGHLQSXGLTEEDNVGLTIWRLPGGGFAVGRFTGGRQAAERELPVVFTEMDGGFN-PS 296

Query: 295 GAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEF-NRRSPFLDVIYGR 353
           GA RR  WV S  R+REG GF R  R F S+ GR R+ +SR++ E  +R+    + ++ R
Sbjct: 297 GASRRNPWVASGIRSREGGGFGRVMRNFLSVFGRFRISSSRSSQETGSRQGSHPETVFER 356

Query: 354 SS 355
           SS
Sbjct: 357 SS 358

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440416|ref|XP_002269373.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like isoform 2 [Vitis vinifera]

 Score =  395 bits (1016), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 213/362 (58%), Positives = 265/362 (73%), Gaps = 11/362 (3%)

Query: 1   MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYP-AAEMYLE 59
           M++ G S+WCYRCNR IR+ +  +DAI+CPDC +GF+EQI  + R    R    + MYLE
Sbjct: 2   MAASGSSFWCYRCNRFIRVWA--QDAILCPDCGSGFVEQINNLSRSPRRRRLPGSAMYLE 59

Query: 60  DTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDD 119
           +    +  P  R  R RR+GGDRS FNPVIVLRG    +   G   T+ ERGNFEL+YDD
Sbjct: 60  NRNALDQDPVPRIRRARRSGGDRSLFNPVIVLRGSADVNGSEGGG-TSGERGNFELYYDD 118

Query: 120 ATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAE 179
            TG+GLRPLPAS+S+FLMGSGFDR+LDQL QL+ NG  R  +PPASKAA+ES+P + I  
Sbjct: 119 GTGSGLRPLPASVSEFLMGSGFDRLLDQLAQLEINGAGRCEHPPASKAAVESLPTIKIVA 178

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR 239
           SHV  ESHCAVCKEPF+L+SEARE+PCKHIYH +CILPWLS+RNSCP+CR ELP ++++ 
Sbjct: 179 SHVLSESHCAVCKEPFELDSEARELPCKHIYHSDCILPWLSLRNSCPVCRHELPTDSHEG 238

Query: 240 GS-----NVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPI 294
           GS     + G   ++ +GLTIWRLPGGGFAVGRF G R+AAERELPVVFTEMDGGFN P 
Sbjct: 239 GSSGHLQSPGLTEEDNVGLTIWRLPGGGFAVGRFTGGRQAAERELPVVFTEMDGGFN-PS 297

Query: 295 GAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRIRLPTSRATAEF-NRRSPFLDVIYGR 353
           GA RR  WV S  R+REG GF R  R F S+ GR R+ +SR++ E  +R+    + ++ R
Sbjct: 298 GASRRNPWVASGIRSREGGGFGRVMRNFLSVFGRFRISSSRSSQETGSRQGSHPETVFER 357

Query: 354 SS 355
           SS
Sbjct: 358 SS 359

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147806280|emb|CAN72193.1| hypothetical protein VITISV_022309 [Vitis vinifera]

 Score =  367 bits (941), Expect = 7e-99,   Method: Compositional matrix adjust.
 Identities = 191/336 (56%), Positives = 229/336 (68%), Gaps = 18/336 (5%)

Query: 7   SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNE--RYPAAEMYLEDTQNP 64
           SYWC+RC R +R+ +  +D+IVCP C +GF+E+IE   R  N   R+PA  MY+     P
Sbjct: 118 SYWCHRCTRFVRVWA--QDSIVCPYCESGFLEEIEATPRSENHHRRFPATAMYMLGNNRP 175

Query: 65  ETFPTTRFG--RTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATG 122
           ++  +   G  R+RRN GDRSPFNPVIVLRGP         EG  +ER +FEL+YDD  G
Sbjct: 176 DSEQSANLGLRRSRRNAGDRSPFNPVIVLRGPADGGG---GEGGVVERSSFELYYDDGAG 232

Query: 123 AGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHV 182
           +GLRPLPA+MS+FLMGSGFDR+L+QL+Q++ NG  R  +PPASKAA+ESMP + I  SH+
Sbjct: 233 SGLRPLPATMSEFLMGSGFDRLLEQLSQIEINGFGRGEHPPASKAAVESMPTIEIVSSHI 292

Query: 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA-NDRGS 241
             E HCAVCKE FQL SEAREMPCKHIYH +CILPWLS+RNSCP+CR ELP +    R S
Sbjct: 293 VTELHCAVCKEAFQLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTDVPGTRNS 352

Query: 242 NVGG--------GPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAP 293
            V G          +ET+GLTIWRLPGGGFAVGRF+G RRA ERELPVV+TEMDGGFN  
Sbjct: 353 PVSGTEALSPAPNEEETVGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFNNS 412

Query: 294 IGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRI 329
               R        R    G    RAFR   S LGR 
Sbjct: 413 GAPRRISWASRRSRSRESGGSLGRAFRNIFSFLGRF 448

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255581502|ref|XP_002531557.1| zinc finger protein, putative [Ricinus communis] gi|223528818|gb|EEF30823.1| zinc finger protein, putative [Ricinus communis]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 205/366 (56%), Positives = 241/366 (65%), Gaps = 35/366 (9%)

Query: 7   SYWCYRCNRIIRIQS-RTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPE 65
           S+WCYRCNR IR++    +D+I CPDC  GFIE+I T              +     +  
Sbjct: 9   SFWCYRCNRFIRVRVPSIQDSISCPDCGGGFIEEIGT------------PSHSPLHHHHR 56

Query: 66  TFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGL 125
            FP     R RR+  DRSPFNPVIVLRGP   +S            NFEL+YDD  G+GL
Sbjct: 57  RFPNNSDHRLRRSA-DRSPFNPVIVLRGPPAANSS-----------NFELYYDDGAGSGL 104

Query: 126 RPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKE 185
           RPLP+S+S+FLMGSGFDR+LDQLTQL+ NGV      PASK AIESMPV+ I   HV+ E
Sbjct: 105 RPLPSSISEFLMGSGFDRLLDQLTQLEINGVGGLEQSPASKTAIESMPVINIISDHVSME 164

Query: 186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVGG 245
           SHCAVCKE F++N+EAREMPCKHIYH +CILPWLS+RNSCP+CR ELP +  +   N   
Sbjct: 165 SHCAVCKEAFEINTEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTDVRNGSGNGMT 224

Query: 246 GPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPI--------GAP 297
            P+ + GLTIWRLPGGGFAVGRF+G RRAAERELPVVFTE+DGGFN           GAP
Sbjct: 225 SPEASEGLTIWRLPGGGFAVGRFSGGRRAAERELPVVFTEVDGGFNNSNSNNNNNAGGAP 284

Query: 298 RRISWVPSRRRAREGN-GFARAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSD 356
           RRISW PS RR+REG  GF RAFR F S  GRI    S  +  FNR     + I  RSS 
Sbjct: 285 RRISWAPSGRRSREGTGGFGRAFRSFFSFFGRIGRRVSDESG-FNRTRSRANSIVDRSSR 343

Query: 357 TATANY 362
             T+ +
Sbjct: 344 RDTSLW 349

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434879|ref|XP_002283212.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Vitis vinifera]

 Score =  362 bits (929), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 191/336 (56%), Positives = 229/336 (68%), Gaps = 18/336 (5%)

Query: 7   SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNE--RYPAAEMYLEDTQNP 64
           SYWC+RC R +R+ +  +D+IVCP C +GF+E+IE   R  N   R+PA  MY+     P
Sbjct: 8   SYWCHRCTRFVRVWA--QDSIVCPYCESGFLEEIEATPRSENHHRRFPATAMYMLGNNRP 65

Query: 65  ETFPTTRFG--RTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATG 122
           ++  +   G  R+RRN GDRSPFNPVIVLRGP         EG  +ER +FEL+YDD  G
Sbjct: 66  DSEQSANLGLRRSRRNAGDRSPFNPVIVLRGPADGGG---GEGGVVERSSFELYYDDGAG 122

Query: 123 AGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHV 182
           +GLRPLPA+MS+FLMGSGFDR+L+QL+Q++ NG  R  +PPASKAA+ESMP + I  SH+
Sbjct: 123 SGLRPLPATMSEFLMGSGFDRLLEQLSQIEINGFGRGEHPPASKAAVESMPTIEIVSSHI 182

Query: 183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA-NDRGS 241
             E HCAVCKE FQL SEAREMPCKHIYH +CILPWLS+RNSCP+CR ELP +    R S
Sbjct: 183 VTELHCAVCKEAFQLGSEAREMPCKHIYHSDCILPWLSLRNSCPVCRHELPTDVPGTRNS 242

Query: 242 NVGG--------GPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAP 293
            V G          +ET+GLTIWRLPGGGFAVGRF+G RRA ERELPVV+TEMDGGFN  
Sbjct: 243 PVSGNEALSPAPNEEETVGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFNNS 302

Query: 294 IGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRI 329
               R        R    G    RAFR   S LGR 
Sbjct: 303 GAPRRISWASRRSRSRESGGSLGRAFRNIFSFLGRF 338

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537930|ref|XP_003537459.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Glycine max]

 Score =  357 bits (917), Expect = 4e-96,   Method: Compositional matrix adjust.
 Identities = 190/345 (55%), Positives = 232/345 (67%), Gaps = 38/345 (11%)

Query: 1   MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSN-------ERYPA 53
           MSS   SYWCYRC+R +R+       +VCPDC  GFIE+IE   R  +        R+PA
Sbjct: 3   MSSGTSSYWCYRCSRFVRVW--PHHTVVCPDCDGGFIEEIEHPPRSVHLDPRRHRHRFPA 60

Query: 54  AEMYLEDTQ-NPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGN 112
           A MY+   + + +  P +   RTRRNGGDRSPFNPVIVLRG           G   E   
Sbjct: 61  AAMYMIGQRPSSDPRPASSLRRTRRNGGDRSPFNPVIVLRG-----------GAEDESRG 109

Query: 113 FELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESM 172
           FELFYDD TG+GLRPLP SMS+FL+GSGFDR+L+QL+Q++ NG+ R+ +PPASKAAI+S+
Sbjct: 110 FELFYDDGTGSGLRPLPPSMSEFLLGSGFDRLLEQLSQIEINGIGRYEHPPASKAAIDSL 169

Query: 173 PVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           P + I ++H+A ESHCAVCKE F+ ++  REMPCKHIYH ECILPWL++ NSCP+CR EL
Sbjct: 170 PTIEIDDTHLAMESHCAVCKEAFETSTAVREMPCKHIYHPECILPWLALHNSCPVCRHEL 229

Query: 233 PNEA--------------NDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERE 278
           P +                +   NVG   +E +GLTIWRLPGGGFAVGRF+G RR A+RE
Sbjct: 230 PADTPNPNPNPNSNSNSNQNPSQNVGLNEEENVGLTIWRLPGGGFAVGRFSGGRRGADRE 289

Query: 279 LPVVFTEMDGGFNAPIGAPRRISWVPSR-RRAREGNGFARAFRGF 322
           LPVV+TEMDGGFN   G PRRISW  SR  R RE  G  R FR  
Sbjct: 290 LPVVYTEMDGGFNNGGGEPRRISW--SRGNRGRESGGLNRFFRNL 332

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224090757|ref|XP_002309072.1| predicted protein [Populus trichocarpa] gi|222855048|gb|EEE92595.1| predicted protein [Populus trichocarpa]

 Score =  357 bits (916), Expect = 5e-96,   Method: Compositional matrix adjust.
 Identities = 189/316 (59%), Positives = 221/316 (69%), Gaps = 35/316 (11%)

Query: 2   SSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDT 61
           SSI  S+WCYRCNR IR+   T+D+I+CPDC  GFIE+I  I RP + R  AA       
Sbjct: 3   SSIESSFWCYRCNRSIRLP--TQDSILCPDCGGGFIEEI-GITRP-HHRLTAAH------ 52

Query: 62  QNPETFPTTRFGRTR-RNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDA 120
                       RTR R GGD SPFNPVI+LRG  T           +  GNFEL+YDD 
Sbjct: 53  ------------RTRLRTGGDHSPFNPVIILRGATTD----------LASGNFELYYDDG 90

Query: 121 TGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAES 180
             +GLRPLPAS+S+ LM SGF+R+LDQLTQ++ NGV RF +P ASKAAIESMPV+ I  S
Sbjct: 91  AASGLRPLPASISELLMDSGFERLLDQLTQMEINGVGRFDHPQASKAAIESMPVIKILNS 150

Query: 181 HVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE-ANDR 239
           HV+ ES CAVCKE F++N+EAREMPC HIYH +CILPWLS+RNSCP+CR ELP E  +  
Sbjct: 151 HVSMESQCAVCKEAFEINTEAREMPCNHIYHSDCILPWLSIRNSCPVCRHELPTETGSGS 210

Query: 240 GSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRR 299
           G N     +ET+GL IWRLPG GFAVGRF+G RRAAERELP+VFTEMDGGFN   G PR 
Sbjct: 211 GRNSPESDEETVGLMIWRLPGRGFAVGRFSGGRRAAERELPLVFTEMDGGFNNA-GLPRS 269

Query: 300 ISWVPSRRRAREGNGF 315
           ISW P  RR+RE  G 
Sbjct: 270 ISWAPDGRRSRESGGV 285

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|14719329|gb|AAK73147.1|AC079022_20 putative RING-H2 finger protein [Oryza sativa]

 Score =  342 bits (878), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 182/324 (56%), Positives = 221/324 (68%), Gaps = 12/324 (3%)

Query: 8   YWCYRCNRIIRIQSRTED-AIVCPDCHTGFIEQIETIQ-RPSNERYPAAEMYLEDTQNPE 65
           YWCY C+R +R  +  +D A+ CPDC  GF+E++     R +  R P A        N  
Sbjct: 21  YWCYSCDRFVRAPAPHDDSAVACPDCGGGFLEEMSAPPPRAAYLRRPRAHH-----ANDL 75

Query: 66  TFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGL 125
               TR        GDRSPFNPVIVLR  ++P + G ++  A    +FELFYDD  G+GL
Sbjct: 76  RLRRTRRAAAAAAAGDRSPFNPVIVLR--RSPAAAGDDDSLAAAT-SFELFYDDGAGSGL 132

Query: 126 RPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRF-VNPPASKAAIESMPVVTIAESHVAK 184
           RPLP +MSDFLMGSGF+R+LDQLTQ++  G+ R   NPPASKA++ESMP VTIA SHV  
Sbjct: 133 RPLPETMSDFLMGSGFERLLDQLTQIEAGGLARARENPPASKASVESMPTVTIAASHVGA 192

Query: 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVG 244
           +SHCAVCKEPF+L  EAREMPC HIYH +CILPWL++RNSCP+CR E+P +A     +  
Sbjct: 193 DSHCAVCKEPFELGDEAREMPCSHIYHQDCILPWLALRNSCPVCRHEMPTDAARPRPSNA 252

Query: 245 GGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVP 304
           G  +ET+GLTIWRLPGGGFAVGRF G RR  ERELPVV+TEMDGGFN   GAPRRISW  
Sbjct: 253 GTEEETVGLTIWRLPGGGFAVGRFAGGRRPEERELPVVYTEMDGGFNNG-GAPRRISWGS 311

Query: 305 SRRRAREGNGFARAFRGFTSLLGR 328
            + R+ E +   R FR   S  GR
Sbjct: 312 RQSRSTERSAIRRIFRNVFSCFGR 335

Source: Oryza sativa

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357472841|ref|XP_003606705.1| RING finger protein [Medicago truncatula] gi|355507760|gb|AES88902.1| RING finger protein [Medicago truncatula]

 Score =  342 bits (877), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 181/326 (55%), Positives = 218/326 (66%), Gaps = 14/326 (4%)

Query: 7   SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLEDTQNPET 66
           SYWCY C R I +   T   IVCP C  GF+E+I   + P +   P    +  DT +   
Sbjct: 11  SYWCYSCTRFINLSDHT--LIVCPHCDNGFVEEIAAGESPHHRLSP----FPADTVSSRR 64

Query: 67  FPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELFYDDATGAGLR 126
               R    RR+ G RSPFNPVIVLRG    D G G +G       FELFYDD  G+GLR
Sbjct: 65  QGFRR---RRRDAGSRSPFNPVIVLRG--AGDDGVGEDGAGAGGSAFELFYDDGDGSGLR 119

Query: 127 PLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKES 186
           PLP ++S+FL+GSGFDR+L+Q +Q++ NG  R  NPPASKAAIESMP V I E HV+ E 
Sbjct: 120 PLPPTVSEFLLGSGFDRLLEQFSQIEMNGFGRPENPPASKAAIESMPTVEICEEHVSCEL 179

Query: 187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND-RGSNVGG 245
           HCAVCKE F+L++EARE+PCKH+YH +CILPWL++RNSCP+CR ELP++ N+   + V G
Sbjct: 180 HCAVCKEEFELHAEARELPCKHLYHSDCILPWLTVRNSCPVCRHELPSDLNNPLETRVSG 239

Query: 246 GPD-ETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIG-APRRISWV 303
             D E +GLTIWRLPGGGFAVGRF+G R A E   PVV+TEMDGG NA  G APRRIS  
Sbjct: 240 QIDEEAIGLTIWRLPGGGFAVGRFSGGRSAGESHFPVVYTEMDGGLNAAQGSAPRRISRT 299

Query: 304 PSRRRAREGNGFARAFRGFTSLLGRI 329
               R RE +G  R FR F S  GRI
Sbjct: 300 VRAHRVRESHGIGRVFRNFFSFFGRI 325

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449450754|ref|XP_004143127.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus] gi|449527992|ref|XP_004170991.1| PREDICTED: E3 ubiquitin-protein ligase RING1-like [Cucumis sativus]

 Score =  340 bits (871), Expect = 8e-91,   Method: Compositional matrix adjust.
 Identities = 187/329 (56%), Positives = 227/329 (68%), Gaps = 20/329 (6%)

Query: 1   MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQR--PSN--ERYPAAEM 56
           MS+   SYWCYRCNR +R  +  +D+I CP C  GF+E IET     PSN   R   + +
Sbjct: 1   MSTGTASYWCYRCNRFVR--AWAQDSITCPYCDGGFVEAIETASSLPPSNLHRRLSPSAI 58

Query: 57  YLEDTQNPETFPTTRFGRTRRNGGDRSPFNPVIVLRGPQTPDSGGGNEGTAMERGNFELF 116
           +  D Q+    P     R+RR  GDRS FNPV+VLRG     +  G+     ER +F+++
Sbjct: 59  HTLD-QDSFQSPRLSTRRSRRRLGDRSTFNPVVVLRG----SADAGDVVGGGERNSFDIY 113

Query: 117 YDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVT 176
           YDD  G+GLRP+PA+MS+FLMG+GFDR+L+QL QL+ NG  R  NPPASKAA+ESMP + 
Sbjct: 114 YDDGAGSGLRPVPATMSEFLMGTGFDRLLEQLAQLEINGFGRSENPPASKAAVESMPTIE 173

Query: 177 IAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236
           I ESHV  +SHCAVCKE F++ +EAREMPCKHIYH ECI+PWLSMRNSCP+CR ELP+E 
Sbjct: 174 ILESHVDSDSHCAVCKEAFEIGTEAREMPCKHIYHSECIIPWLSMRNSCPVCRHELPSE- 232

Query: 237 NDRGSNVGGGPD-----ETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFN 291
             R S  GG  D     ET+GLTIWRLPGGGFAVGRF+G R A ER+ P V+TEMDGGFN
Sbjct: 233 --RVSPAGGVSDRVVDEETVGLTIWRLPGGGFAVGRFSGGRLAGERDPPAVYTEMDGGFN 290

Query: 292 APIGAPRRISWVPSRRRAREGNGFARAFR 320
              G PRR+SW   R R RE  G  R FR
Sbjct: 291 GN-GVPRRVSWASRRSRGRESRGIGRTFR 318

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2075175	395	RDUF1 "RING and Domain of Unkn	0.879	0.832	0.466	5.7e-75
TAIR|locus:2148318	407	RDUF2 "RING and Domain of Unkn	0.901	0.828	0.453	1.9e-74
TAIR|locus:2063912	401	RHC2A "RING-H2 finger C2A" [Ar	0.844	0.788	0.419	4.2e-63
TAIR|locus:2195573	327	AT1G60360 [Arabidopsis thalian	0.272	0.311	0.449	2.4e-33
TAIR|locus:2102569	320	RZF1 "AT3G56580" [Arabidopsis	0.596	0.696	0.317	3.7e-32
TAIR|locus:2058465	328	RHC1A "RING-H2 finger C1A" [Ar	0.620	0.707	0.305	6.2e-30
TAIR|locus:2092895	315	AT3G13430 [Arabidopsis thalian	0.272	0.323	0.416	4.7e-29
TAIR|locus:1006230278	199	AT3G10815 [Arabidopsis thalian	0.216	0.407	0.530	4.1e-28
TAIR|locus:2092231	328	AT3G19950 [Arabidopsis thalian	0.596	0.679	0.303	6.4e-28
TAIR|locus:2193874	351	AT1G55530 [Arabidopsis thalian	0.358	0.381	0.354	1.1e-26

TAIR|locus:2075175 RDUF1 "RING and Domain of Unknown Function 1117 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 756 (271.2 bits), Expect = 5.7e-75, P = 5.7e-75
 Identities = 167/358 (46%), Positives = 219/358 (61%)

Query:     2 SSIGLSYWCYRCNRIIRI-QSRTEDA-IVCPDCHTGFIEQIETIQRPSNERYPAAEMYLE 59
             +++  SYWCY C R I + + +  +A ++CP C+ GFIE+IE     +    PA+   + 
Sbjct:    25 TTLTTSYWCYSCTRFISVWEDQDANAGVLCPYCNGGFIEEIEDSSNSTVAAIPASTPEVR 84

Query:    60 DTQNPETFPXXXXXXXXXXXXXXSPFNPVIVLRGPQTPDSGGG--NE---GTAMERGNFE 114
               +  ET                + FNPVIVL G     +G    NE   G   ER  +E
Sbjct:    85 SVE--ETH---RSIIRRRRSNRRTSFNPVIVLHGGGGGGAGERVENEEGDGATRERRAYE 139

Query:   115 LFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDF--NGVTRFVNPPASKAAIESM 172
              +YDD +G+GLRPLP S+S+ LMGSGF+R+L+QL+Q++   NG+ R  NPPASK+AIES+
Sbjct:   140 FYYDDGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASGNGIGRSGNPPASKSAIESL 199

Query:   173 PVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
             P V I++ H   E++CAVC E F+   E REMPCKHI+HG+CI+PWLS+RNSCP+CR EL
Sbjct:   200 PRVEISDCHTKAEANCAVCTEVFEAGIEGREMPCKHIFHGDCIVPWLSIRNSCPVCRFEL 259

Query:   233 PNEANDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNA 292
             P++   R +      +  +G+TIWRLPGGGFAVGRFN   R  ER LPVV TEMDGG   
Sbjct:   260 PSDPIQRSNE----EEHAVGMTIWRLPGGGFAVGRFNAGVREGERILPVVLTEMDGGGLG 315

Query:   293 PIGAPRRISWV-----P--SRRRAREGNG--FARAFRGFTSLLGRIRLPTSRATAEFN 341
                 PRRISWV     P  SR   R GNG    RA RG  S + R+R P SR ++  N
Sbjct:   316 SNEGPRRISWVRAHETPEMSRNGGRSGNGGRLRRAVRGMVSFMRRVR-P-SRGSSNSN 371

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0005634 "nucleus" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009611 "response to wounding" evidence=RCA

GO:0009612 "response to mechanical stimulus" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2148318 RDUF2 "RING and Domain of Unknown Function 1117 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 751 (269.4 bits), Expect = 1.9e-74, P = 1.9e-74
 Identities = 167/368 (45%), Positives = 219/368 (59%)

Query:     4 IGLSYWCYRCNRIIRIQS----RTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLE 59
             I  SYWCY C R + + +     T  ++ CP C  GFIEQI      + E    A   + 
Sbjct:    14 ITASYWCYSCTRFVSVWADQGTTTVGSVACPHCDGGFIEQINDSSSAATELTIPASTEVR 73

Query:    60 DTQNPETFPXXXXXXXXXXXXXXSPFNPVIVLRGPQTPDSGGGNEG-TAMERGNFELFYD 118
                N                     FNPVIVL+G    +   G EG  A +R  FE +YD
Sbjct:    74 SINNNRR-----SVIRRRRSGRRPSFNPVIVLQGG-AGEREEGEEGDAARDRRAFEFYYD 127

Query:   119 DATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFN--GVTRFVNPPASKAAIESMPVVT 176
             D +G+GLRPLP S+S+ LMGSGF+R+L+QL+Q++ +  G+ R  NPPASK+AIES+P V 
Sbjct:   128 DGSGSGLRPLPDSVSEILMGSGFERLLEQLSQIEASATGIGRSGNPPASKSAIESLPRVE 187

Query:   177 IAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA 236
             I++ H+  E++CAVC E F+  +EAREMPCKH++H +CI+PWLS+RNSCP+CR ELP+E 
Sbjct:   188 ISDCHIGSEANCAVCTEIFETETEAREMPCKHLFHDDCIVPWLSIRNSCPVCRFELPSEP 247

Query:   237 NDRGSNVGGGPDETLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGF--NAPI 294
             N R +N     D  +G+TIWRLPGGGFAVGRFN + R  ER LPVV TEMDGG   N+  
Sbjct:   248 NRRSNN--NEEDNAVGMTIWRLPGGGFAVGRFNAAMRDGERVLPVVLTEMDGGGIGNSQD 305

Query:   295 GAPRRISWVPSRRRAR-EGNG----------FARAFRGFTSLLGRIR--LPTSRATAEFN 341
             G PRRISWV S      + NG            R  RG  SL+ R+R    +S ++A  +
Sbjct:   306 G-PRRISWVRSHGTLESDSNGTGSGSGSGGRLRRMVRGMVSLMRRVRPNRSSSSSSAAIS 364

Query:   342 RRSPFLDV 349
               S  LD+
Sbjct:   365 TSSDNLDL 372

GO:0005634 "nucleus" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=IEP;RCA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IMP

GO:0009737 "response to abscisic acid stimulus" evidence=IMP

GO:0051865 "protein autoubiquitination" evidence=IDA

GO:0002679 "respiratory burst involved in defense response" evidence=RCA

GO:0009693 "ethylene biosynthetic process" evidence=RCA

GO:0009873 "ethylene mediated signaling pathway" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

TAIR|locus:2063912 RHC2A "RING-H2 finger C2A" [Arabidopsis thaliana (taxid:3702)]

 Score = 644 (231.8 bits), Expect = 4.2e-63, P = 4.2e-63
 Identities = 148/353 (41%), Positives = 199/353 (56%)

Query:     7 SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQ------------IETIQRPSNERYP-- 52
             SYWCY C+R + + S +     C       I++              T Q  S  R+P  
Sbjct:     5 SYWCYSCSRFVWV-SDSISCPDCDGGFLELIQEPLDFTPSDSFTTTTTTQHRSPTRFPPP 63

Query:    53 -AAEMYLEDTQNPETFPXXXXXXXXXXXXXXSPFNPVIVLRGPQT-PDSGGGNEGTAMER 110
              ++      + + +  P              SP NPVIVLRG    P S   +EG  ++R
Sbjct:    64 SSSSSTPSASMHADNSPTPTIVTRTRSNR--SP-NPVIVLRGSAAAPSSDVVSEG--LDR 118

Query:   111 GNFELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFN---GVTRFVNPPASKA 167
               F+++YDD T +GLRPLP SM++FL+GSGFDR+LDQ++Q++ N    +    +PPASK+
Sbjct:   119 SAFQMYYDDGTDSGLRPLPPSMTEFLLGSGFDRLLDQISQIELNTNRNLRSCEHPPASKS 178

Query:   168 AIESMPVVTIAESHVAKES--HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSC 225
             AIE++P++ I  +H+  +S  HCAVCKE F L S AREMPC HIYH +CILPWL++RNSC
Sbjct:   179 AIEALPLIEIDPTHLLSDSQSHCAVCKENFVLKSSAREMPCNHIYHPDCILPWLAIRNSC 238

Query:   226 PLCRRELPNEANDRGSNVG---------GGPDETLGLTIWRLPGGGFAVGRFNGSRRAAE 276
             P+CR ELP E    G+               D   GLTIWRLPGGGFAVGR  G  R  +
Sbjct:   239 PVCRHELPAEDLTDGTGAALTAVTATAEEEEDSAAGLTIWRLPGGGFAVGRIPGGWRGGD 298

Query:   277 RELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREGNGFARAFRGFTSLLGRI 329
             R +PVV+TE+DGG       PRR++W  SRR  R+G G      GF   + R+
Sbjct:   299 RMMPVVYTEVDGGRLGDERLPRRVAW-GSRRGGRDGGGSRERGGGFAGRIMRL 350

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2195573 AT1G60360 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 49/109 (44%), Positives = 68/109 (62%)

Query:   127 PLPASMSDFLMG-SGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKE 185
             P   +  D+  G S  +++++QLTQ D  G      PPAS+  I S+P V I   H+  +
Sbjct:   166 PRHVNSHDYFTGASSLEQLIEQLTQDDRPGP-----PPASEPTINSLPSVKITPQHLTND 220

Query:   186 -SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233
              S C VC E F +  +A E+PCKHIYH +CI+PWL + NSCP+CRR+LP
Sbjct:   221 MSQCTVCMEEFIVGGDATELPCKHIYHKDCIVPWLRLNNSCPICRRDLP 269

GO:0008270 "zinc ion binding" evidence=IEA;ISS

TAIR|locus:2102569 RZF1 "AT3G56580" [Arabidopsis thaliana (taxid:3702)]

 Score = 352 (129.0 bits), Expect = 3.7e-32, P = 3.7e-32
 Identities = 79/249 (31%), Positives = 134/249 (53%)

Query:     1 MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIET--------IQR-PSNERY 51
             MSSI  ++WC+RC R + +++R  DA VC  C  GF+E+I+         ++R P+ +  
Sbjct:     1 MSSIRNTHWCHRCQRAVWLRAR--DA-VCSYCGGGFVEEIDIGPSRAHRDVERDPTFDLM 57

Query:    52 PAAEMYLEDTQNPETFPXXXXXXXXXXXXXX-SPFNPVIVLRGPQTPDSGGGNEGTAMER 110
              A   ++       ++                S   P+++  G Q P    G + +++E 
Sbjct:    58 EAFSAFMRSRLAERSYDREISGRLGSAGSESFSNLAPLLIFGG-QAPFRLAGGDNSSVEA 116

Query:   111 GNFELFYDDAT-GAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAI 169
                  F + A  G G+     +  D+  G G + +++QL+    +G      PPA K++I
Sbjct:   117 -----FVNGAAPGIGIAR-GTNAGDYFFGPGLEELIEQLS----SGTHHRGPPPAPKSSI 166

Query:   170 ESMPVVTIAESHV-AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLC 228
             +++P + I + H+ + +SHC VCK+ F+L SEA++MPC HIYH +CI+PWL   NSCP+C
Sbjct:   167 DALPTIKITQKHLKSSDSHCPVCKDEFELKSEAKQMPCHHIYHSDCIVPWLVQHNSCPVC 226

Query:   229 RRELPNEAN 237
             R+ELP+  +
Sbjct:   227 RKELPSRGS 235

GO:0005575 "cellular_component" evidence=ND

GO:0008270 "zinc ion binding" evidence=ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0009414 "response to water deprivation" evidence=IEP

GO:1902006 "negative regulation of proline biosynthetic process" evidence=IMP

TAIR|locus:2058465 RHC1A "RING-H2 finger C1A" [Arabidopsis thaliana (taxid:3702)]

 Score = 331 (121.6 bits), Expect = 6.2e-30, P = 6.2e-30
 Identities = 77/252 (30%), Positives = 124/252 (49%)

Query:     1 MSSIGLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQRPSNERYPAAEMYLED 60
             MSS   ++WC+RC R +R+  +     VC  C  GF+E+++  Q    + + +    +E 
Sbjct:     1 MSSSRNTHWCHRCQRAVRLHGQEP---VCFYCGGGFVEELDMAQASPFDMFRSHRGVVER 57

Query:    61 TQNPETFPXXXXXXXXXXXXXXSP--FNPVIVLRGPQT-PDSG-----GGNEGTAMERGN 112
              Q  +                          +  GP+  P        GG     +   N
Sbjct:    58 DQTFDLMDAFSVFMRNRLAERSHDREIRGRTISSGPENFPGLAPLLIFGGQVPYRLTGDN 117

Query:   113 F--ELFYDDATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIE 170
                 LF   + G G+     +  D+  G G + + +QL+     G TR   PPA ++AI+
Sbjct:   118 AVEALFNGGSPGIGITR--GNTGDYFFGPGLEELFEQLSA----GTTRRGPPPAPRSAID 171

Query:   171 SMPVVTIAESHV-AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR 229
             ++P + IA+ H+ + +S+C VCK+ F+L SEA++MPC HIYH +CI+PWL   NSCP+CR
Sbjct:   172 ALPTIKIAQRHLRSSDSNCPVCKDEFELGSEAKQMPCNHIYHSDCIVPWLVQHNSCPVCR 231

Query:   230 RELPNEANDRGS 241
             +ELP+ +    S
Sbjct:   232 QELPSASGPSSS 243

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0005618 "cell wall" evidence=IDA

TAIR|locus:2092895 AT3G13430 [Arabidopsis thaliana (taxid:3702)]

 Score = 257 (95.5 bits), Expect = 4.7e-29, Sum P(2) = 4.7e-29
 Identities = 45/108 (41%), Positives = 72/108 (66%)

Query:   131 SMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAV 190
             S+ D+ +G GF+ +L +L + D N   R+  PPA+K A+E++ +V I +S +     C+V
Sbjct:   174 SLGDYFIGPGFETLLQRLAENDLNN--RYGTPPATKEAVEALAMVKIEDSLL----QCSV 227

Query:   191 CKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 238
             C + F++  EA+EMPCKH +H +C+LPWL + +SCP+CR  LP   +D
Sbjct:   228 CLDDFEIGMEAKEMPCKHKFHSDCLLPWLELHSSCPVCRYLLPTGDDD 275

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

TAIR|locus:1006230278 AT3G10815 [Arabidopsis thaliana (taxid:3702)]

 Score = 268 (99.4 bits), Expect = 4.1e-28, Sum P(2) = 4.1e-28
 Identities = 43/81 (53%), Positives = 60/81 (74%)

Query:   162 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM 221
             PPAS AAI S+  + I + H+  + +C VC++ F++ S+AR+MPCKHIYH ECILPWL  
Sbjct:    95 PPASLAAINSLQKIKIRQKHLGLDPYCPVCQDQFEIGSDARKMPCKHIYHSECILPWLVQ 154

Query:   222 RNSCPLCRRELPNEANDRGSN 242
             RN+CP+CR+ELP + N+   N
Sbjct:   155 RNTCPVCRKELPQDRNNSRKN 175

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

TAIR|locus:2092231 AT3G19950 [Arabidopsis thaliana (taxid:3702)]

 Score = 312 (114.9 bits), Expect = 6.4e-28, P = 6.4e-28
 Identities = 77/254 (30%), Positives = 128/254 (50%)

Query:     8 YWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIETIQ-------RP--SNERYPAAEMYL 58
             ++CY+CN+ + I   +     CP C+ GF+E+ E           P  S+  +P A+ + 
Sbjct:    21 FFCYQCNQTVTISISSSADPFCPICNQGFLEEYEDPNPNQSLNFNPNSSDSFFPMADPF- 79

Query:    59 EDTQNPETFPXXXXXXXXXXXXXXSPFNPVIVLRG---PQTPDSGGGNEGTAMER----- 110
               T  P  F               S F P +  +     Q P S   +  T ++      
Sbjct:    80 -STLLPLIF--GSSAAAPSGMDFMSLFGPSMQPQARSTQQNPQSDAFDPFTFLQNHLQTL 136

Query:   111 ---G-NFELFYDD-ATGAGLRPLPASMSDFLMGSGFDRVLDQLTQLDFNGVTRFVNPPAS 165
                G +FE   ++  +  G R +P +  D+  G G ++++ QL + D N   R+  PPAS
Sbjct:   137 RSSGTHFEFVIENHPSDPGNR-MPGNFGDYFFGPGLEQLIQQLAENDPN---RYGTPPAS 192

Query:   166 KAAIESMPVVTIAESHVAKE-SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS 224
             K+AI+++P V + +  +  E + CAVC + F+  S+ ++MPCKH++H +C+LPWL + NS
Sbjct:   193 KSAIDALPTVKVTKDMLKSEMNQCAVCMDEFEDGSDVKQMPCKHVFHQDCLLPWLELHNS 252

Query:   225 CPLCRRELPNEAND 238
             CP+CR ELP +  D
Sbjct:   253 CPVCRFELPTDDPD 266

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0010200 "response to chitin" evidence=RCA

TAIR|locus:2193874 AT1G55530 [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 1.1e-26, Sum P(2) = 1.1e-26
 Identities = 51/144 (35%), Positives = 83/144 (57%)

Query:    95 QTPDSGGGNEGTAMERGNFELFYDDATGAGLRPLPA-SMSDFLMGSGFDRVLDQLTQLDF 153
             ++  +GG N G  +              A +  +PA S+ D+ +G GF+ +L +L + D 
Sbjct:   137 ESTGNGGNNPGRVILINTSNQTITVQNSADMDSVPAGSLGDYFIGPGFEMLLQRLAENDP 196

Query:   154 NGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGE 213
             N   R+  PPA K A+E++  V I E+       C+VC + F++ +EA+ MPC H +H +
Sbjct:   197 N---RYGTPPAKKEAVEALATVKIEET-----LQCSVCLDDFEIGTEAKLMPCTHKFHSD 248

Query:   214 CILPWLSMRNSCPLCRRELP-NEA 236
             C+LPWL + +SCP+CR +LP +EA
Sbjct:   249 CLLPWLELHSSCPVCRYQLPADEA 272

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	6.3.2	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00021348001 SubName- Full=Chromosome chr8 scaffold_23, whole genome shotgun sequence; (361 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
pfam06547	115	pfam06547, DUF1117, Protein of unknown function (D	5e-30
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	6e-16
pfam14369	34	pfam14369, zf-RING_3, zinc-finger	2e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	3e-11
pfam12678	73	pfam12678, zf-rbx1, RING-H2 zinc finger	2e-09
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	2e-09
smart00184	40	smart00184, RING, Ring finger	1e-08
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	2e-07
COG5194	88	COG5194, APC11, Component of SCF ubiquitin ligase	6e-07
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	2e-06
pfam12861	85	pfam12861, zf-Apc11, Anaphase-promoting complex su	3e-06
COG5243	491	COG5243, HRD1, HRD ubiquitin ligase complex, ER me	4e-06
COG5219	1525	COG5219, COG5219, Uncharacterized conserved protei	4e-06
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	5e-05

>gnl|CDD|219082 pfam06547, DUF1117, Protein of unknown function (DUF1117)

 Score =  111 bits (278), Expect = 5e-30
 Identities = 60/108 (55%), Positives = 68/108 (62%), Gaps = 2/108 (1%)

Query: 250 TLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRA 309
           T+GLTIWRLPGGGFAVGRF G RRA ERELPVV+TEMDGGFN   GAPRRISW     R+
Sbjct: 1   TVGLTIWRLPGGGFAVGRFAGGRRAGERELPVVYTEMDGGFNGN-GAPRRISWGSRGNRS 59

Query: 310 REGNGFA-RAFRGFTSLLGRIRLPTSRATAEFNRRSPFLDVIYGRSSD 356
           RE  G   R FR   S  GR+    S +++  +R          RSS 
Sbjct: 60  RERGGIIRRIFRNMFSCFGRVHSSRSSSSSSSSRSGSRDRSSSSRSSV 107

This family represents the C-terminus of a number of hypothetical plant proteins. Length = 115

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 70.5 bits (173), Expect = 6e-16
 Identities = 18/44 (40%), Positives = 26/44 (59%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRE 231
           C +C + F+   E   +PC H++H EC+  WL   N+CPLCR  
Sbjct: 3   CPICLDEFEPGEEVVVLPCGHVFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|222714 pfam14369, zf-RING_3, zinc-finger

 Score = 57.6 bits (140), Expect = 2e-11
 Identities = 17/34 (50%), Positives = 25/34 (73%), Gaps = 1/34 (2%)

Query: 7  SYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI 40
           YWCY+C+R +RI + + D+ VCP C  GF+E+I
Sbjct: 2  RYWCYQCDRFVRI-APSGDSDVCPRCGGGFVEEI 34

Length = 34

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 57.8 bits (140), Expect = 3e-11
 Identities = 18/46 (39%), Positives = 26/46 (56%), Gaps = 3/46 (6%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
           C +C E F+       +PC H++   CI  WL S +N+CPLCR  +
Sbjct: 2   CPICLEEFR--EPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|221705 pfam12678, zf-rbx1, RING-H2 zinc finger

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 20/52 (38%), Positives = 26/52 (50%), Gaps = 10/52 (19%)

Query: 188 CAVCKEPF-----QLNSEAREMP-----CKHIYHGECILPWLSMRNSCPLCR 229
           CA+C+  F     +  S   + P     C H +H  CI  WL  RN+CPLCR
Sbjct: 22  CAICRNHFDGTCPECKSPGDDCPVVWGECGHAFHLHCISRWLKTRNTCPLCR 73

There are 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding. The protein, of which this domain is the conserved region, participates in diverse functions relevant to chromosome metabolism and cell cycle control. Length = 73

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 52.1 bits (125), Expect = 2e-09
 Identities = 15/47 (31%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRR 230
           +E  C +C +  +        PC H++  ECIL +L  ++ CP+CR 
Sbjct: 1   EELECPICLDLLR--DPVVLTPCGHVFCRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 50.2 bits (120), Expect = 1e-08
 Identities = 14/42 (33%), Positives = 21/42 (50%), Gaps = 3/42 (7%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLC 228
           C +C E +    +   +PC H +   CI  WL   N +CP+C
Sbjct: 1   CPICLEEYL--KDPVILPCGHTFCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 52.3 bits (125), Expect = 2e-07
 Identities = 19/47 (40%), Positives = 25/47 (53%), Gaps = 1/47 (2%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRRELP 233
           CA+C   F  N   R +PC H +H  C+  WL    N CP+CR  +P
Sbjct: 326 CAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIP 372

Length = 374

>gnl|CDD|227521 COG5194, APC11, Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

 Score = 46.8 bits (111), Expect = 6e-07
 Identities = 17/64 (26%), Positives = 24/64 (37%), Gaps = 14/64 (21%)

Query: 181 HVAKESHCAVCKEPF-------QLNSE-AREMP-----CKHIYHGECILPWLSMRNSCPL 227
            +  +  CA+C+          Q       E P     C H +H  CI  WL  +  CPL
Sbjct: 17  DIPIDV-CAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPL 75

Query: 228 CRRE 231
            R+ 
Sbjct: 76  DRQT 79

Length = 88

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 43.6 bits (103), Expect = 2e-06
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 3/42 (7%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLC 228
           C +C E  +       +PC H++  +CIL WL S   +CPLC
Sbjct: 1   CPICLEEPK--DPVTILPCGHLFCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|193335 pfam12861, zf-Apc11, Anaphase-promoting complex subunit 11 RING-H2 finger

 Score = 44.8 bits (106), Expect = 3e-06
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 13/64 (20%)

Query: 181 HVAKESHCAVCKEPF-----QLNSEAREMP-----CKHIYHGECILPWLSMRNS---CPL 227
               +  C +C+  F     Q      + P     CKH +H  CIL WL+   S   CP+
Sbjct: 17  DTPSDDVCGICRVSFDGTCPQCKFPGDDCPLVWGKCKHNFHMHCILKWLATETSKGLCPM 76

Query: 228 CRRE 231
           CR+ 
Sbjct: 77  CRQT 80

Apc11 is one of the subunits of the anaphase-promoting complex or cyclosome. The APC subunits are cullin family proteins with ubiquitin ligase activity. Polyubiquitination marks proteins for degradation by the 26S proteasome and is carried out by a cascade of enzymes that includes ubiquitin-activating enzymes (E1s), ubiquitin-conjugating enzymes (E2s), and ubiquitin ligases (E3s). Apc11 acts as an E3 enzyme and is responsible for recruiting E2s to the APC and for mediating the subsequent transfer of ubiquitin to APC substrates in vivo. In Saccharomyces cerevisiae this RING-H2 finger protein defines the minimal ubiquitin ligase activity of the APC, and the integrity of the RING-H2 finger is essential for budding yeast cell viability. Length = 85

>gnl|CDD|227568 COG5243, HRD1, HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

 Score = 48.4 bits (115), Expect = 4e-06
 Identities = 19/74 (25%), Positives = 32/74 (43%), Gaps = 10/74 (13%)

Query: 169 IESMPVVTIAESHVAKESHCAVCKE----------PFQLNSEAREMPCKHIYHGECILPW 218
           + +M      E     +  C +C +          P  L+   + +PC HI H  C+  W
Sbjct: 271 LNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNW 330

Query: 219 LSMRNSCPLCRREL 232
           L  + +CP+CRR +
Sbjct: 331 LERQQTCPICRRPV 344

Length = 491

>gnl|CDD|227544 COG5219, COG5219, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 48.5 bits (115), Expect = 4e-06
 Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 10/61 (16%)

Query: 181  HVAKESHCAVCKEPFQLNSEAREMP------CKHIYHGECILPWL--SMRNSCPLCRREL 232
              +    CA+C     L+   R +P      CK+ +H  C+  W   S R++CPLCR E+
Sbjct: 1465 KFSGHEECAICY--SVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEI 1522

Query: 233  P 233
             
Sbjct: 1523 T 1523

Length = 1525

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 44.0 bits (104), Expect = 5e-05
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 7/54 (12%)

Query: 184 KESHCAVCKEPFQLNSEAREM------PCKHIYHGECILPWLSMRNSCPLCRRE 231
           K+  CA+C E    + E + M       C H++  ECI  W   +N+CP+CR  
Sbjct: 173 KDKECAICMEKV-YDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTP 225

Length = 238

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PF06547	117	DUF1117: Protein of unknown function (DUF1117); In	99.97
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	99.6
PF14369	35	zf-RING_3: zinc-finger	99.57
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	99.46
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	99.24
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	99.18
PHA02929	238	N1R/p28-like protein; Provisional	99.16
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	99.16
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.94
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.92
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.84
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.82
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	98.8
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	98.77
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	98.75
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.73
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.57
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.56
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.54
PHA02926	242	zinc finger-like protein; Provisional	98.53
PF14634	44	zf-RING_5: zinc-RING finger domain	98.53
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.5
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.49
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	98.46
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.41
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	98.29
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.19
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	98.16
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	98.14
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	98.07
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	98.05
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.02
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.98
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.96
COG5219	1525	Uncharacterized conserved protein, contains RING Z	97.89
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.85
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.82
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.77
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.75
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	97.75
KOG4445	368	consensus Uncharacterized conserved protein, conta	97.72
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	97.64
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	97.52
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	97.44
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.3
KOG0825	1134	consensus PHD Zn-finger protein [General function	97.28
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.24
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	97.19
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	97.11
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	97.06
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	96.95
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.91
KOG0801	205	consensus Predicted E3 ubiquitin ligase [Posttrans	96.88
KOG1941	518	consensus Acetylcholine receptor-associated protei	96.55
KOG0297	391	consensus TNF receptor-associated factor [Signal t	96.51
PF12906	47	RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.	96.33
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	96.29
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	96.28
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	96.17
KOG2660	331	consensus Locus-specific chromosome binding protei	95.88
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	95.86
PHA02862	156	5L protein; Provisional	95.7
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	95.66
COG5152	259	Uncharacterized conserved protein, contains RING a	95.53
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	95.4
KOG3970	299	consensus Predicted E3 ubiquitin ligase [Posttrans	95.23
PHA02825	162	LAP/PHD finger-like protein; Provisional	95.15
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	94.99
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.96
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	94.58
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.5
PF08746	43	zf-RING-like: RING-like domain; InterPro: IPR01485	94.08
COG5236	493	Uncharacterized conserved protein, contains RING Z	94.06
PHA03096	284	p28-like protein; Provisional	93.99
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	93.88
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	93.74
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	93.68
KOG1952	950	consensus Transcription factor NF-X1, contains NFX	93.56
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	93.39
KOG3039	303	consensus Uncharacterized conserved protein [Funct	93.35
COG5222	427	Uncharacterized conserved protein, contains RING Z	93.15
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.97
KOG4739	233	consensus Uncharacterized protein involved in syna	92.51
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	92.47
PF04641	260	Rtf2: Rtf2 RING-finger	92.43
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.37
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.1
COG0375	115	HybF Zn finger protein HypA/HybF (possibly regulat	92.01
PF14446	54	Prok-RING_1: Prokaryotic RING finger family 1	91.6
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.44
KOG3053	293	consensus Uncharacterized conserved protein [Funct	90.71
COG5175	480	MOT2 Transcriptional repressor [Transcription]	90.48
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	89.48
KOG1940	276	consensus Zn-finger protein [General function pred	89.35
COG2093	64	DNA-directed RNA polymerase, subunit E'' [Transcri	89.25
KOG2034	911	consensus Vacuolar sorting protein PEP3/VPS18 [Int	89.13
KOG3268	234	consensus Predicted E3 ubiquitin ligase [Posttrans	88.87
COG5270	202	PUA domain (predicted RNA-binding domain) [Transla	87.63
KOG0298	1394	consensus DEAD box-containing helicase-like transc	87.58
KOG1001	674	consensus Helicase-like transcription factor HLTF/	86.9
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	86.4
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	85.97
KOG1609	323	consensus Protein involved in mRNA turnover and st	85.72
PRK03681	114	hypA hydrogenase nickel incorporation protein; Val	85.64
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	84.63
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	84.56
COG5183	1175	SSM4 Protein involved in mRNA turnover and stabili	84.32
TIGR00100	115	hypA hydrogenase nickel insertion protein HypA. In	84.02
PRK00564	117	hypA hydrogenase nickel incorporation protein; Pro	83.79
PRK00398	46	rpoP DNA-directed RNA polymerase subunit P; Provis	83.37
PF13240	23	zinc_ribbon_2: zinc-ribbon domain	81.61
PF10571	26	UPF0547: Uncharacterised protein family UPF0547; I	80.84
KOG3800	300	consensus Predicted E3 ubiquitin ligase containing	80.35
PRK03824	135	hypA hydrogenase nickel incorporation protein; Pro	80.16

>PF06547 DUF1117: Protein of unknown function (DUF1117); InterPro: IPR010543 This entry represents the C terminus of a number of hypothetical plant proteins

Probab=99.97  E-value=4.8e-31  Score=218.01  Aligned_cols=96  Identities=60%  Similarity=1.048  Sum_probs=85.8

Q ss_pred             CCCcccccCCCCcccceeecCCcchhhccCCceeecCCCCCCCCCCCCceeeeccCCccccCC-CC-hhhhhhhhhhhhc
Q 017269          250 TLGLTIWRLPGGGFAVGRFNGSRRAAERELPVVFTEMDGGFNAPIGAPRRISWVPSRRRAREG-NG-FARAFRGFTSLLG  327 (374)
Q Consensus       250 ~~~~~~~~~pggg~av~r~~g~rr~~e~~~P~~~~~~d~~fn~~~~~pr~~s~~~~~~~~~~~-~~-~~r~~~~~~~~~~  327 (374)
                      +++||||++|+||||||||+|++|++|+|||++||||||+||.+.++||||||+.++.+++++ || |+|+|||||+||+
T Consensus         1 avGLTIWRLPGGGFAVGRF~GgrR~gErelPvVyTEmDGgfn~~~g~PRRisW~~r~~r~~~~~gg~~~R~frn~fs~f~   80 (117)
T PF06547_consen    1 AVGLTIWRLPGGGFAVGRFSGGRRAGERELPVVYTEMDGGFNNGGGAPRRISWSSRGGRSRERRGGGFRRVFRNLFSCFG   80 (117)
T ss_pred             CcceEEEEcCCCceEEeeecCCCcCCcccCCEEEEEecCCccCCCCCceeeeecccCCcccccccchHHHHHHHHHHHhc
Confidence            478999999999999999999999999999999999999999656999999999999999996 55 9999999999999


Q ss_pred             CcCCCCCcccccccCCCC
Q 017269          328 RIRLPTSRATAEFNRRSP  345 (374)
Q Consensus       328 ~~~~~~~~~~~~~~~~~~  345 (374)
                      ++++++|++++.+++..+
T Consensus        81 ~~~~~~s~ss~~~s~~~s   98 (117)
T PF06547_consen   81 RIGSSSSSSSSSSSRSGS   98 (117)
T ss_pred             CCCCCccccccccccccc
Confidence            999988877644444433

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.60  E-value=7.8e-16  Score=152.32  Aligned_cols=79  Identities=28%  Similarity=0.721  Sum_probs=67.9

Q ss_pred             cCCCCCHHHHhcCCceeeecccccCC-CcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCCCC
Q 017269          160 VNPPASKAAIESMPVVTIAESHVAKE-SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNEAN  237 (374)
Q Consensus       160 ~~ppas~~~i~~lp~~~~~~~~~~~~-~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~~~  237 (374)
                      ....+.|..+.++|..+++....... ..|+||+|+|+.|+++++|||+|.||..||++||.++. .||+||..+.....
T Consensus       203 ~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~~  282 (348)
T KOG4628|consen  203 RRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDSG  282 (348)
T ss_pred             hhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCCC
Confidence            35678899999999999987654433 49999999999999999999999999999999998775 59999998877754


Q ss_pred             C
Q 017269          238 D  238 (374)
Q Consensus       238 ~  238 (374)
                      .
T Consensus       283 ~  283 (348)
T KOG4628|consen  283 S  283 (348)
T ss_pred             C
Confidence            4

>PF14369 zf-RING_3: zinc-finger

Probab=99.57  E-value=1.2e-15  Score=103.82  Aligned_cols=35  Identities=46%  Similarity=1.248  Sum_probs=30.7

Q ss_pred             CceeecccCcceeeccCCCCCccCCCCCCCceEEe
Q 017269            6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI   40 (374)
Q Consensus         6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi   40 (374)
                      ++||||+|+|+|++....+++++||+|++||||||
T Consensus         1 ~~ywCh~C~~~V~~~~~~~~~~~CP~C~~gFvEei   35 (35)
T PF14369_consen    1 QRYWCHQCNRFVRIAPSPDSDVACPRCHGGFVEEI   35 (35)
T ss_pred             CCEeCccCCCEeEeCcCCCCCcCCcCCCCcEeEeC
Confidence            48999999999999765566667999999999997

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=99.46  E-value=2e-14  Score=101.90  Aligned_cols=44  Identities=41%  Similarity=1.114  Sum_probs=40.5

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR  229 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR  229 (374)
                      ++|+||+++|..++.+..++|+|.||.+||..||+.+.+||+||
T Consensus         1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred             CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence            36999999999999999999999999999999999999999997

...

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=99.24  E-value=1.2e-11  Score=122.31  Aligned_cols=73  Identities=27%  Similarity=0.696  Sum_probs=55.9

Q ss_pred             CCCHHHHhcCCceeeecccccCCCcccccCCc-cccC---------CCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269          163 PASKAAIESMPVVTIAESHVAKESHCAVCKEP-FQLN---------SEAREMPCKHIYHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       163 pas~~~i~~lp~~~~~~~~~~~~~~C~ICle~-f~~~---------~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      .+.|+.-+-+|++...+- ..+|..|.||+|+ |..+         .+.+.|||+|+||.+|++.|++++++||+||.++
T Consensus       266 r~~kdl~~~~~t~t~eql-~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHilHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         266 RATKDLNAMYPTATEEQL-TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHILHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             HHhhHHHhhcchhhhhhh-cCCCCeEEEecccccCCCCccCcccccCCcccccccceeeHHHHHHHHHhccCCCcccCcc
Confidence            345566666666553332 4557899999999 4433         2569999999999999999999999999999997


Q ss_pred             CCCC
Q 017269          233 PNEA  236 (374)
Q Consensus       233 ~~~~  236 (374)
                      .-+.
T Consensus       345 ifd~  348 (491)
T COG5243         345 IFDQ  348 (491)
T ss_pred             cccc
Confidence            5553

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=99.18  E-value=1.6e-11  Score=96.72  Aligned_cols=45  Identities=44%  Similarity=1.081  Sum_probs=36.1

Q ss_pred             CCcccccCCcccc----------CCCeEEccccCccchhhHHHHHhcCCCCCccC
Q 017269          185 ESHCAVCKEPFQL----------NSEAREMPCKHIYHGECILPWLSMRNSCPLCR  229 (374)
Q Consensus       185 ~~~C~ICle~f~~----------~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR  229 (374)
                      ++.|+||++.|..          .-.+...+|+|.||..||.+||+.+++||+||
T Consensus        19 ~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   19 DDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             CSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred             CCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence            4569999999932          12345567999999999999999999999997

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>PHA02929 N1R/p28-like protein; Provisional

Probab=99.16  E-value=1.8e-11  Score=116.41  Aligned_cols=72  Identities=26%  Similarity=0.557  Sum_probs=55.3

Q ss_pred             CCCHHHHhcCCceeeeccc---ccCCCcccccCCccccCCC-----eEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          163 PASKAAIESMPVVTIAESH---VAKESHCAVCKEPFQLNSE-----AREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       163 pas~~~i~~lp~~~~~~~~---~~~~~~C~ICle~f~~~~~-----~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      ..++..++.+|.+...-+.   ...+.+|+||++.+.....     ...++|+|.||..||..|++.+.+||+||..+..
T Consensus       149 ~~~~~~i~~lp~vl~~~e~~~~~~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~~  228 (238)
T PHA02929        149 KNYKKFLKTIPSVLSEYEKLYNRSKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFIS  228 (238)
T ss_pred             chhHHHHHhcchhhhhhhhhhcCCCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEeeE
Confidence            3478888899988644332   2346899999998765431     2345699999999999999999999999998754

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=1.5e-11  Score=118.87  Aligned_cols=50  Identities=38%  Similarity=0.955  Sum_probs=46.6

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~  234 (374)
                      .-+|+|||+.|..+++.+.|||+|.||..||.+|+. .++.||+||.++|+
T Consensus       323 GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP  373 (374)
T COG5540         323 GVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP  373 (374)
T ss_pred             CceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence            478999999999999999999999999999999997 66799999999985

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.94  E-value=8.1e-10  Score=101.74  Aligned_cols=54  Identities=19%  Similarity=0.607  Sum_probs=43.2

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc----------------CCCCCccCccCCCCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM----------------RNSCPLCRRELPNEANDR  239 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~----------------~~sCPvCR~~l~~~~~~~  239 (374)
                      .++.+|+||++.++   +.++++|+|.||+.||..|+..                ...||+||.++.......
T Consensus        16 ~~~~~CpICld~~~---dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvP   85 (193)
T PLN03208         16 GGDFDCNICLDQVR---DPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVP   85 (193)
T ss_pred             CCccCCccCCCcCC---CcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEE
Confidence            34688999999875   5677899999999999999852                247999999997764443

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.92  E-value=7.5e-10  Score=103.87  Aligned_cols=59  Identities=20%  Similarity=0.550  Sum_probs=46.0

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc---CCCCCccCccCCCCCCCCCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM---RNSCPLCRRELPNEANDRGSNVG  244 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~---~~sCPvCR~~l~~~~~~~~~~~~  244 (374)
                      ....+|.||||.-+   +.+++.|+|.||+.||.+||..   .+.|||||.+|..++..+-...+
T Consensus        45 ~~~FdCNICLd~ak---dPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG  106 (230)
T KOG0823|consen   45 GGFFDCNICLDLAK---DPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRG  106 (230)
T ss_pred             CCceeeeeeccccC---CCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeeccC
Confidence            34589999988643   6667779999999999999963   44799999999887665544433

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.84  E-value=2.5e-09  Score=73.69  Aligned_cols=44  Identities=39%  Similarity=1.061  Sum_probs=36.5

Q ss_pred             cccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccC
Q 017269          187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRREL  232 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l  232 (374)
                      .|+||++.+  .+....++|+|.||..|+..|++. +..||+|+..+
T Consensus         1 ~C~iC~~~~--~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEF--REPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhh--hCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999987  235555569999999999999987 67899999764

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.82  E-value=2.2e-09  Score=103.48  Aligned_cols=50  Identities=34%  Similarity=0.852  Sum_probs=43.5

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ....|.+|||...   ....+||+|+||+.||..|+..+..||+||.++.+.+
T Consensus       238 a~~kC~LCLe~~~---~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  238 ATRKCSLCLENRS---NPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCceEEEecCCC---CCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence            3478999988754   6778999999999999999999999999999886653

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=98.80  E-value=3e-09  Score=77.35  Aligned_cols=46  Identities=28%  Similarity=0.831  Sum_probs=39.5

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      +..|.||++...   .+..+||+|. |+..|+..|++....||+||.++.
T Consensus         2 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~   48 (50)
T PF13920_consen    2 DEECPICFENPR---DVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE   48 (50)
T ss_dssp             HSB-TTTSSSBS---SEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred             cCCCccCCccCC---ceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence            467999988754   6889999999 999999999999999999999874

...

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=98.77  E-value=3.6e-09  Score=85.46  Aligned_cols=53  Identities=34%  Similarity=0.852  Sum_probs=40.3

Q ss_pred             cCCCcccccCCcccc--------CCC--eEEccccCccchhhHHHHHhc---CCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQL--------NSE--AREMPCKHIYHGECILPWLSM---RNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~--------~~~--~~~lpC~H~FH~~CI~~WL~~---~~sCPvCR~~l~~~  235 (374)
                      ..++.|.||...|+.        |++  +..-.|+|.||.+||.+||..   +..||+||+++..+
T Consensus        19 ~~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~k   84 (85)
T PF12861_consen   19 ANDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWKFK   84 (85)
T ss_pred             CCCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeeeeC
Confidence            347889999998863        222  233349999999999999974   46899999987544

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.75  E-value=2.6e-09  Score=112.74  Aligned_cols=51  Identities=29%  Similarity=0.922  Sum_probs=45.2

Q ss_pred             CCCcccccCCccccCCC--eEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSE--AREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~--~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      .+..|+||+|++..+..  ++.|||+|+||..|+..|+++.++||+||..+..
T Consensus       290 ~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~CL~~W~er~qtCP~CR~~~~~  342 (543)
T KOG0802|consen  290 SDELCIICLEELHSGHNITPKRLPCGHIFHDSCLRSWFERQQTCPTCRTVLYD  342 (543)
T ss_pred             cCCeeeeechhhccccccccceeecccchHHHHHHHHHHHhCcCCcchhhhhc
Confidence            46899999999987654  8999999999999999999999999999995533

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.73  E-value=6.4e-09  Score=71.90  Aligned_cols=39  Identities=31%  Similarity=0.858  Sum_probs=33.0

Q ss_pred             ccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvC  228 (374)
                      |+||++.+..  .++.++|+|.|+..||..|++.+..||+|
T Consensus         1 C~iC~~~~~~--~~~~~~CGH~fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRD--PVVVTPCGHSFCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SS--EEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccC--cCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence            8999998763  44788999999999999999988899998

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.57  E-value=4.4e-08  Score=69.19  Aligned_cols=38  Identities=29%  Similarity=0.839  Sum_probs=29.9

Q ss_pred             ccccCCccccCCCeEEccccCccchhhHHHHHhcC----CCCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR----NSCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~----~sCPvC  228 (374)
                      |+||++.|+   +.+.|+|+|.|+..||..|.+..    ..||+|
T Consensus         1 CpiC~~~~~---~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFK---DPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-S---SEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhC---CccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence            899999987   78999999999999999999643    369998

>smart00504 Ubox Modified RING finger domain

Probab=98.56  E-value=5.6e-08  Score=73.06  Aligned_cols=47  Identities=21%  Similarity=0.440  Sum_probs=41.2

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..|+||++.++   +.+.++|+|.|+..||..|++.+.+||+|+.++..+
T Consensus         2 ~~Cpi~~~~~~---~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~~   48 (63)
T smart00504        2 FLCPISLEVMK---DPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTHE   48 (63)
T ss_pred             cCCcCCCCcCC---CCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCChh
Confidence            46999999876   457889999999999999998888999999988544

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>smart00184 RING Ring finger

Probab=98.54  E-value=6.2e-08  Score=64.33  Aligned_cols=38  Identities=37%  Similarity=1.045  Sum_probs=33.1

Q ss_pred             ccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvC  228 (374)
                      |+||++.   ......++|+|.||..||..|++ .+..||+|
T Consensus         1 C~iC~~~---~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEE---LKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccC---CCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence            7899887   34778899999999999999998 66689998

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>PHA02926 zinc finger-like protein; Provisional

Probab=98.53  E-value=4.8e-08  Score=91.54  Aligned_cols=53  Identities=32%  Similarity=0.737  Sum_probs=39.1

Q ss_pred             cCCCcccccCCccccC-----CCeEEc-cccCccchhhHHHHHhcC------CCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLN-----SEAREM-PCKHIYHGECILPWLSMR------NSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~-----~~~~~l-pC~H~FH~~CI~~WL~~~------~sCPvCR~~l~~~  235 (374)
                      ..+.+|+||+|..-..     ....+| +|+|.||..||..|.+.+      .+||+||..+...
T Consensus       168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I  232 (242)
T PHA02926        168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFRNI  232 (242)
T ss_pred             cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceeeee
Confidence            3468999999975322     122345 599999999999999743      3699999987544

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.53  E-value=6.2e-08  Score=68.79  Aligned_cols=44  Identities=30%  Similarity=0.818  Sum_probs=38.6

Q ss_pred             cccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCc
Q 017269          187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRR  230 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~  230 (374)
                      +|+||++.|........++|+|+|+..||..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence            49999999966667889999999999999999866678999984

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.50  E-value=8.6e-08  Score=66.46  Aligned_cols=39  Identities=38%  Similarity=1.057  Sum_probs=32.9

Q ss_pred             ccccCCccccCCCeEEccccCccchhhHHHHHh--cCCCCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLS--MRNSCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~--~~~sCPvC  228 (374)
                      |+||++.++.  ....++|+|.|+..||..|++  ....||+|
T Consensus         1 C~iC~~~~~~--~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFED--PVILLPCGHSFCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSS--EEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccC--CCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence            8999998763  335899999999999999998  45579998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.49  E-value=5.8e-08  Score=88.06  Aligned_cols=51  Identities=24%  Similarity=0.673  Sum_probs=42.7

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ...|+|||+.++.... ....|+|+||+.||+.-|+....||+|+.+|..++
T Consensus       131 ~~~CPiCl~~~sek~~-vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k~  181 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVP-VSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHKQ  181 (187)
T ss_pred             ccCCCceecchhhccc-cccccchhHHHHHHHHHHHhCCCCCCcccccchhh
Confidence            3789999999875322 34669999999999999999999999999887664

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=98.46  E-value=1.1e-07  Score=75.72  Aligned_cols=50  Identities=30%  Similarity=0.743  Sum_probs=37.3

Q ss_pred             CcccccCCcc-----------ccCCCeEEcc--ccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          186 SHCAVCKEPF-----------QLNSEAREMP--CKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f-----------~~~~~~~~lp--C~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +.|+||...|           ..+++....-  |+|.||.+||.+||..+..||++|+++...
T Consensus        21 d~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~~   83 (88)
T COG5194          21 DVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVLA   83 (88)
T ss_pred             chhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEEe
Confidence            4566665544           3444433332  999999999999999999999999987544

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.41  E-value=1.7e-07  Score=95.28  Aligned_cols=51  Identities=31%  Similarity=0.671  Sum_probs=43.7

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +.....|+||++.|.   ..++++|+|.||..||..|+.....||+|+..+...
T Consensus        23 Le~~l~C~IC~d~~~---~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~~   73 (397)
T TIGR00599        23 LDTSLRCHICKDFFD---VPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQES   73 (397)
T ss_pred             cccccCCCcCchhhh---CccCCCCCCchhHHHHHHHHhCCCCCCCCCCccccc
Confidence            445688999999886   456789999999999999998888999999987654

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=2.2e-07  Score=73.37  Aligned_cols=50  Identities=32%  Similarity=0.927  Sum_probs=37.0

Q ss_pred             CCcccccCCcccc--------CCCe-EEcc-ccCccchhhHHHHHh---cCCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQL--------NSEA-REMP-CKHIYHGECILPWLS---MRNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~--------~~~~-~~lp-C~H~FH~~CI~~WL~---~~~sCPvCR~~l~~  234 (374)
                      ++.|-||...|..        |++. .++- |.|.||.+||.+||.   .+..||+||+++..
T Consensus        20 ~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~   82 (84)
T KOG1493|consen   20 DETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQF   82 (84)
T ss_pred             CCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeEe
Confidence            4689999888863        3322 2222 999999999999995   33479999998754

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.19  E-value=6.5e-07  Score=85.72  Aligned_cols=49  Identities=29%  Similarity=0.756  Sum_probs=41.4

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHH-HHhcCCC-CCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILP-WLSMRNS-CPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~-WL~~~~s-CPvCR~~l~~~  235 (374)
                      .+..|+||++..+   ....++|+|+||..||.. |-+++.. ||+||+.+..+
T Consensus       214 ~d~kC~lC~e~~~---~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk  264 (271)
T COG5574         214 ADYKCFLCLEEPE---VPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPK  264 (271)
T ss_pred             cccceeeeecccC---CcccccccchhhHHHHHHHHHhhccccCchhhhhccch
Confidence            4688999988754   778899999999999999 9876665 99999987655

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=98.16  E-value=1.4e-06  Score=63.58  Aligned_cols=42  Identities=24%  Similarity=0.816  Sum_probs=33.7

Q ss_pred             cccccCCccccCCCeEEcccc-----CccchhhHHHHHhc--CCCCCccC
Q 017269          187 HCAVCKEPFQLNSEAREMPCK-----HIYHGECILPWLSM--RNSCPLCR  229 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~WL~~--~~sCPvCR  229 (374)
                      .|.||++ ...++...++||.     |.+|..|+.+|+..  +.+||+|+
T Consensus         1 ~CrIC~~-~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHD-EGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCC-CCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence            4899998 4445566789975     88999999999954  45899995

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.14  E-value=7.5e-07  Score=91.31  Aligned_cols=50  Identities=38%  Similarity=1.014  Sum_probs=39.5

Q ss_pred             CCcccccCCccccC---CC-----------eEEccccCccchhhHHHHHhcC-CCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLN---SE-----------AREMPCKHIYHGECILPWLSMR-NSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~---~~-----------~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~  234 (374)
                      ...|+||+.+++.-   .+           -..+||.|+||..|+..|.... -.||+||.+||.
T Consensus       571 t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  571 TNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             cccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence            46899999887531   12           2345899999999999999854 499999999875

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.07  E-value=1e-06  Score=84.62  Aligned_cols=52  Identities=27%  Similarity=0.834  Sum_probs=41.6

Q ss_pred             CCCcccccCCccccCC-------CeEEccccCccchhhHHHHH--hcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNS-------EAREMPCKHIYHGECILPWL--SMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~-------~~~~lpC~H~FH~~CI~~WL--~~~~sCPvCR~~l~~~  235 (374)
                      ++..|+||-..+....       +.-+|.|+|.||..||.-|-  -.+++||.|+.++..+
T Consensus       223 ~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl~  283 (328)
T KOG1734|consen  223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDLK  283 (328)
T ss_pred             CcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence            3678999987765433       56778899999999999997  4677999999887544

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.05  E-value=2e-06  Score=71.62  Aligned_cols=50  Identities=34%  Similarity=0.750  Sum_probs=37.0

Q ss_pred             CCcccccCCccc------------cCCCeEEc--cccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQ------------LNSEAREM--PCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~------------~~~~~~~l--pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      -+.|+||...+.            ..++....  -|+|.||.+||.+||+.++.||+|..++..
T Consensus        46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~~  109 (114)
T KOG2930|consen   46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWVF  109 (114)
T ss_pred             echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCcceeE
Confidence            367999866432            11222222  299999999999999999999999887754

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.02  E-value=2.6e-06  Score=88.03  Aligned_cols=48  Identities=33%  Similarity=0.845  Sum_probs=38.9

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-----CCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-----RNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-----~~sCPvCR~~l~~~  235 (374)
                      +..|+|||+...   .+..+.|+|+||..||..++..     ...||+|+..+..+
T Consensus       186 ~~~CPICL~~~~---~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k  238 (513)
T KOG2164|consen  186 DMQCPICLEPPS---VPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLK  238 (513)
T ss_pred             CCcCCcccCCCC---cccccccCceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence            678999988754   5566669999999999998843     35899999988664

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.98  E-value=4.4e-06  Score=59.47  Aligned_cols=38  Identities=29%  Similarity=0.891  Sum_probs=22.9

Q ss_pred             ccccCCcccc-CCCeEEccccCccchhhHHHHHhcCC----CCC
Q 017269          188 CAVCKEPFQL-NSEAREMPCKHIYHGECILPWLSMRN----SCP  226 (374)
Q Consensus       188 C~ICle~f~~-~~~~~~lpC~H~FH~~CI~~WL~~~~----sCP  226 (374)
                      |+||+| |.. .+..+.|+|+|.|+.+||.+|++...    .||
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP   43 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP   43 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred             CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence            899999 754 45678999999999999999997432    576

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.96  E-value=5.9e-06  Score=64.86  Aligned_cols=49  Identities=24%  Similarity=0.497  Sum_probs=38.8

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~  236 (374)
                      +..|+||.+.|.   +.+++||+|.|...||..||+. +.+||+|+..+...+
T Consensus         4 ~f~CpIt~~lM~---dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~~~   53 (73)
T PF04564_consen    4 EFLCPITGELMR---DPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSESD   53 (73)
T ss_dssp             GGB-TTTSSB-S---SEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SGGG
T ss_pred             ccCCcCcCcHhh---CceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCccc
Confidence            478999988876   7889999999999999999988 789999998887653

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.89  E-value=2.8e-06  Score=92.48  Aligned_cols=51  Identities=29%  Similarity=0.911  Sum_probs=37.6

Q ss_pred             cCCCcccccCCccccCC---CeEEcc-ccCccchhhHHHHHh--cCCCCCccCccCC
Q 017269          183 AKESHCAVCKEPFQLNS---EAREMP-CKHIYHGECILPWLS--MRNSCPLCRRELP  233 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~---~~~~lp-C~H~FH~~CI~~WL~--~~~sCPvCR~~l~  233 (374)
                      ..-.+|+||...+..-+   .-+..+ |+|.||..||.+|++  .+++||+||.+++
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence            34588999976654211   223334 999999999999996  5568999998875

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.85  E-value=4.8e-06  Score=82.24  Aligned_cols=49  Identities=29%  Similarity=0.664  Sum_probs=43.5

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      ..|-||.|-|.   .+.++||+|.||.-||..+|..+..||.|+.++.+...
T Consensus        24 LRC~IC~eyf~---ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~L   72 (442)
T KOG0287|consen   24 LRCGICFEYFN---IPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESDL   72 (442)
T ss_pred             HHHhHHHHHhc---CceeccccchHHHHHHHHHhccCCCCCceecccchhhh
Confidence            67999988876   67899999999999999999999999999998866543

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.82  E-value=1.3e-05  Score=78.93  Aligned_cols=52  Identities=23%  Similarity=0.436  Sum_probs=38.7

Q ss_pred             CCcccccCCccccCCC--eEEccccCccchhhHHHHH-hcCCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSE--AREMPCKHIYHGECILPWL-SMRNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~--~~~lpC~H~FH~~CI~~WL-~~~~sCPvCR~~l~~~~  236 (374)
                      +..|+||+.+--....  ..+.+|+|.||..||...+ .....||+|+..+....
T Consensus         3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~   57 (309)
T TIGR00570         3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN   57 (309)
T ss_pred             CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence            4689999996333333  2333799999999999966 45568999999886654

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.77  E-value=1.2e-05  Score=78.14  Aligned_cols=48  Identities=25%  Similarity=0.588  Sum_probs=41.8

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      -..|-||.+-|.   ...+++|+|.||.-||...|..+..||+||.+-.+.
T Consensus        25 ~lrC~IC~~~i~---ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~es   72 (391)
T COG5432          25 MLRCRICDCRIS---IPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCES   72 (391)
T ss_pred             HHHhhhhhheee---cceecccccchhHHHHHHHhcCCCCCccccccHHhh
Confidence            367999999876   566888999999999999999999999999976544

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.75  E-value=9.4e-06  Score=75.34  Aligned_cols=44  Identities=32%  Similarity=0.712  Sum_probs=38.3

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR  229 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR  229 (374)
                      ..+..|+||++.|...   +++||+|.||..||..++...-.||.||
T Consensus        11 ~~~~~C~iC~~~~~~p---~~l~C~H~~c~~C~~~~~~~~~~Cp~cr   54 (386)
T KOG2177|consen   11 QEELTCPICLEYFREP---VLLPCGHNFCRACLTRSWEGPLSCPVCR   54 (386)
T ss_pred             cccccChhhHHHhhcC---ccccccchHhHHHHHHhcCCCcCCcccC
Confidence            3457899999999854   8999999999999999998555899999

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=97.75  E-value=1.2e-05  Score=82.03  Aligned_cols=47  Identities=30%  Similarity=0.802  Sum_probs=38.4

Q ss_pred             CCcccccCCccccCC-CeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLNS-EAREMPCKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~~-~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      -.+|+||||-+.... .+....|.|.||..|+..|  ...+|||||.-..
T Consensus       175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~  222 (493)
T KOG0804|consen  175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS  222 (493)
T ss_pred             CCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence            368999999986543 3455669999999999999  5678999999665

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=97.72  E-value=1.3e-05  Score=78.22  Aligned_cols=94  Identities=21%  Similarity=0.454  Sum_probs=64.8

Q ss_pred             cchhHHHHHHhhhcccCCccccCCCCCHHHHhcCCceeeecccccCCCcccccCCccccCCCeEEccccCccchhhHHHH
Q 017269          139 SGFDRVLDQLTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPW  218 (374)
Q Consensus       139 ~~ld~LleqL~q~e~n~~~r~~~ppas~~~i~~lp~~~~~~~~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~W  218 (374)
                      +.|.+|..++..+-..+.+    -|+--+.|+....+.....+  ....|.|||.-|..++...+++|-|.||..|+..+
T Consensus        75 ~~~~~i~~~~~~iikq~~g----~pii~~lie~~~e~LT~nn~--p~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRy  148 (368)
T KOG4445|consen   75 PEFREIQRQIQEIIKQNSG----MPIICQLIEHCSEFLTENNH--PNGQCVICLYGFASSPAFTVTACDHYMHFACLARY  148 (368)
T ss_pred             HHHHHHHHHHHHHHHhcCC----CchhHHHHHHHHHHcccCCC--CCCceEEEEEeecCCCceeeehhHHHHHHHHHHHH
Confidence            4567777777665544444    34445556554433322222  24679999999999999999999999999999877


Q ss_pred             Hh-----------------------cCCCCCccCccCCCCCCC
Q 017269          219 LS-----------------------MRNSCPLCRRELPNEAND  238 (374)
Q Consensus       219 L~-----------------------~~~sCPvCR~~l~~~~~~  238 (374)
                      |.                       ....|||||..|..+.+.
T Consensus       149 l~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~s  191 (368)
T KOG4445|consen  149 LTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEENS  191 (368)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhccccccc
Confidence            61                       122699999998776443

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=97.64  E-value=2e-05  Score=61.68  Aligned_cols=51  Identities=22%  Similarity=0.523  Sum_probs=23.3

Q ss_pred             CCcccccCCccc-cCCC-eEEc---cccCccchhhHHHHHhc----C-------CCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQ-LNSE-AREM---PCKHIYHGECILPWLSM----R-------NSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~-~~~~-~~~l---pC~H~FH~~CI~~WL~~----~-------~sCPvCR~~l~~~  235 (374)
                      +..|.||+..+. .+.. ....   .|++.||..||..||..    +       ..||.|+.+|..+
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~~~   68 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPISWS   68 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEEGG
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeeeEe
Confidence            357999998765 2222 2222   39999999999999941    1       1499999987543

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=1e-05  Score=80.40  Aligned_cols=59  Identities=22%  Similarity=0.514  Sum_probs=44.7

Q ss_pred             eeeecccccCCCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          175 VTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       175 ~~~~~~~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      +.+....+..+..|+|||+-++.  ...+.-|.|.||.+||..-++ .+++||.||+.+...
T Consensus        33 i~~~l~~~~~~v~c~icl~llk~--tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Sk   92 (381)
T KOG0311|consen   33 IMVDLAMFDIQVICPICLSLLKK--TMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSK   92 (381)
T ss_pred             heecHHHhhhhhccHHHHHHHHh--hcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhcccc
Confidence            34444455667899999997762  233334999999999999996 677999999988665

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.52  E-value=5.5e-05  Score=75.42  Aligned_cols=48  Identities=23%  Similarity=0.698  Sum_probs=40.8

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..+|.|||.+-.   +..+|||.|. .|..|.+..--+++.||+||+.+..-
T Consensus       290 gkeCVIClse~r---dt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~l  338 (349)
T KOG4265|consen  290 GKECVICLSESR---DTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEEL  338 (349)
T ss_pred             CCeeEEEecCCc---ceEEecchhhehhHhHHHHHHHhhcCCCccccchHhh
Confidence            478999988754   7789999997 89999988767889999999987543

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.44  E-value=5.7e-05  Score=75.92  Aligned_cols=50  Identities=26%  Similarity=0.789  Sum_probs=37.7

Q ss_pred             CcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC---CCCCccCccCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR---NSCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~---~sCPvCR~~l~~~  235 (374)
                      ..|.||.+-+....++.-+. |+|+||..|+..|++.-   ..||+|+-.++..
T Consensus         5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~~~r   58 (465)
T KOG0827|consen    5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKLQER   58 (465)
T ss_pred             ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecccce
Confidence            57999966555444555555 99999999999999743   4799999666554

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.30  E-value=0.0001  Score=73.98  Aligned_cols=50  Identities=30%  Similarity=0.777  Sum_probs=38.0

Q ss_pred             CCCcccccCCccccCC----CeEEcc-ccCccchhhHHHHH--hc-----CCCCCccCccCC
Q 017269          184 KESHCAVCKEPFQLNS----EAREMP-CKHIYHGECILPWL--SM-----RNSCPLCRRELP  233 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~----~~~~lp-C~H~FH~~CI~~WL--~~-----~~sCPvCR~~l~  233 (374)
                      .+.+|.||++......    ...+|| |.|.||..||..|-  ++     .+.||.||....
T Consensus       160 ~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~  221 (344)
T KOG1039|consen  160 SEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPSS  221 (344)
T ss_pred             ccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCccc
Confidence            4689999999764322    123456 99999999999998  44     578999998653

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=97.28  E-value=4.7e-05  Score=81.95  Aligned_cols=50  Identities=26%  Similarity=0.573  Sum_probs=43.1

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      ...|++|+..+..+......+|.|.||..||..|-+.-++||+||.++..
T Consensus       123 ~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~~  172 (1134)
T KOG0825|consen  123 ENQCPNCLKSCNDQLEESEKHTAHYFCEECVGSWSRCAQTCPVDRGEFGE  172 (1134)
T ss_pred             hhhhhHHHHHHHHHhhccccccccccHHHHhhhhhhhcccCchhhhhhhe
Confidence            46899999988766666667799999999999999999999999998643

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.24  E-value=0.00013  Score=71.25  Aligned_cols=48  Identities=19%  Similarity=0.482  Sum_probs=39.5

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~  235 (374)
                      ..+|+||+.+   +...+.|+|+|.||.-||+--.+.. .+|++||.+++..
T Consensus         7 ~~eC~IC~nt---~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    7 KKECLICYNT---GNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             CCcceeeecc---CCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence            4679999776   4466899999999999999877654 4799999999765

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=97.19  E-value=0.00013  Score=56.15  Aligned_cols=46  Identities=22%  Similarity=0.607  Sum_probs=22.7

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..|++|.+.++  +.+....|.|+|+..||..-+.  ..||+|+.+.-..
T Consensus         8 LrCs~C~~~l~--~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q   53 (65)
T PF14835_consen    8 LRCSICFDILK--EPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ   53 (65)
T ss_dssp             TS-SSS-S--S--S-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred             cCCcHHHHHhc--CCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence            56999988765  2334455999999999988654  3599999876544

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=97.11  E-value=0.00019  Score=72.56  Aligned_cols=48  Identities=27%  Similarity=0.825  Sum_probs=40.0

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHh--cCCCCCccCccCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS--MRNSCPLCRRELPNEA  236 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~--~~~sCPvCR~~l~~~~  236 (374)
                      ..|.||-|   .+.++++-||+|..|..|+..|-.  ..++||.||.++.-.+
T Consensus       370 eLCKICae---ndKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte  419 (563)
T KOG1785|consen  370 ELCKICAE---NDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTE  419 (563)
T ss_pred             HHHHHhhc---cCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEecccc
Confidence            57999955   455889999999999999999984  3579999999986543

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.06  E-value=0.00012  Score=54.60  Aligned_cols=46  Identities=24%  Similarity=0.646  Sum_probs=35.1

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHh-cCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLS-MRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~-~~~sCPvCR~~l~  233 (374)
                      +++|.||+|.   .-+.+...|+|+ .+.+|-..-++ .+..||+||+++.
T Consensus         7 ~dECTICye~---pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~   54 (62)
T KOG4172|consen    7 SDECTICYEH---PVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK   54 (62)
T ss_pred             ccceeeeccC---cchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence            3789999664   224445669998 78899877665 7889999999864

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.95  E-value=0.00051  Score=69.63  Aligned_cols=48  Identities=25%  Similarity=0.850  Sum_probs=37.2

Q ss_pred             CCcccccCCcccc-CC-CeEEccccCccchhhHHHHHh--cCCCCCccCccC
Q 017269          185 ESHCAVCKEPFQL-NS-EAREMPCKHIYHGECILPWLS--MRNSCPLCRREL  232 (374)
Q Consensus       185 ~~~C~ICle~f~~-~~-~~~~lpC~H~FH~~CI~~WL~--~~~sCPvCR~~l  232 (374)
                      ...|+||++.++. ++ ....+.|+|.|..+||..||.  ....||.|..+-
T Consensus         4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka   55 (463)
T KOG1645|consen    4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA   55 (463)
T ss_pred             cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence            4689999999874 33 344555999999999999995  223799997764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.91  E-value=0.00046  Score=70.59  Aligned_cols=50  Identities=34%  Similarity=0.685  Sum_probs=43.3

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..+..|.||+..+.   ..+.+||+|.||..||.+-+.+...||.||.+++.-
T Consensus        82 ~sef~c~vc~~~l~---~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e~  131 (398)
T KOG4159|consen   82 RSEFECCVCSRALY---PPVVTPCGHSFCLECLDRSLDQETECPLCRDELVEL  131 (398)
T ss_pred             cchhhhhhhHhhcC---CCccccccccccHHHHHHHhccCCCCcccccccccc
Confidence            45789999977765   667789999999999999888888999999999863

>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.00032  Score=63.14  Aligned_cols=40  Identities=23%  Similarity=0.646  Sum_probs=32.6

Q ss_pred             CceeeecccccC-CCcccccCCccccCCCeEEccccCccch
Q 017269          173 PVVTIAESHVAK-ESHCAVCKEPFQLNSEAREMPCKHIYHG  212 (374)
Q Consensus       173 p~~~~~~~~~~~-~~~C~ICle~f~~~~~~~~lpC~H~FH~  212 (374)
                      |.+.+.++.+.. ..+|.||||+++.++.+..|||-.+||+
T Consensus       164 PrlsYNdDVL~ddkGECvICLEdL~~GdtIARLPCLCIYHK  204 (205)
T KOG0801|consen  164 PRLSYNDDVLKDDKGECVICLEDLEAGDTIARLPCLCIYHK  204 (205)
T ss_pred             cccccccchhcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence            445555554443 4789999999999999999999999997

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=96.55  E-value=0.0011  Score=66.93  Aligned_cols=47  Identities=36%  Similarity=0.849  Sum_probs=38.7

Q ss_pred             CCcccccCCccccC-CCeEEccccCccchhhHHHHHhcCC--CCCccCcc
Q 017269          185 ESHCAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRN--SCPLCRRE  231 (374)
Q Consensus       185 ~~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~WL~~~~--sCPvCR~~  231 (374)
                      +..|..|-+.+-.. +....|||.|+||..|+...|.++.  +||-||.-
T Consensus       365 ~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crkl  414 (518)
T KOG1941|consen  365 ELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKL  414 (518)
T ss_pred             hhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            57799998887654 3567899999999999999997554  89999943

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=96.51  E-value=0.0014  Score=67.09  Aligned_cols=54  Identities=26%  Similarity=0.669  Sum_probs=43.6

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      ++.+..|+||...+..  .+....|+|.||..||..|+..+..||.|+..+...+.
T Consensus        18 ~~~~l~C~~C~~vl~~--p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRD--PVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccC--CCCCCCCCCcccccccchhhccCcCCcccccccchhhc
Confidence            4556889999888763  22225799999999999999999999999988766543

>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A

Probab=96.33  E-value=0.0024  Score=46.20  Aligned_cols=40  Identities=28%  Similarity=0.758  Sum_probs=27.2

Q ss_pred             ccccCCccccCCCeEEccc--cC---ccchhhHHHHHh--cCCCCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPC--KH---IYHGECILPWLS--MRNSCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC--~H---~FH~~CI~~WL~--~~~sCPvC  228 (374)
                      |-||++.-+..+ ..+.||  +-   ..|..||..|+.  .+.+|++|
T Consensus         1 CrIC~~~~~~~~-~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C   47 (47)
T PF12906_consen    1 CRICLEGEEEDE-PLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC   47 (47)
T ss_dssp             ETTTTEE-SSSS--EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred             CeEeCCcCCCCC-ceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence            789988765544 567785  44   789999999996  45679988

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=96.29  E-value=0.0024  Score=72.85  Aligned_cols=69  Identities=25%  Similarity=0.557  Sum_probs=48.4

Q ss_pred             HHHHhcCCceeeecc--cccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC----------CCCccCccCC
Q 017269          166 KAAIESMPVVTIAES--HVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN----------SCPLCRRELP  233 (374)
Q Consensus       166 ~~~i~~lp~~~~~~~--~~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~----------sCPvCR~~l~  233 (374)
                      +..-+-||-...+..  ..+.++.|-||..+--....+..|.|+|+||..|...-|+++-          +||+|+.++.
T Consensus      3465 kNEE~CLPCl~Cdks~tkQD~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3465 KNEEHCLPCLHCDKSATKQDADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred             cchhhcccccccChhhhhcccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence            444455665543332  2345789999977654456778899999999999987665321          7999999874


Q ss_pred             C
Q 017269          234 N  234 (374)
Q Consensus       234 ~  234 (374)
                      .
T Consensus      3545 H 3545 (3738)
T KOG1428|consen 3545 H 3545 (3738)
T ss_pred             h
Confidence            3

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=96.28  E-value=0.0022  Score=48.26  Aligned_cols=41  Identities=24%  Similarity=0.722  Sum_probs=28.2

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc--CCCCCc
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM--RNSCPL  227 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~--~~sCPv  227 (374)
                      ...|+|.+..|+  +.++...|+|.|-+..|..||+.  ...||+
T Consensus        11 ~~~CPiT~~~~~--~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   11 SLKCPITLQPFE--DPVKSKKCGHTFEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             -SB-TTTSSB-S--SEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred             ccCCCCcCChhh--CCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence            478999999987  45666679999999999999943  347998

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=96.17  E-value=0.0016  Score=70.46  Aligned_cols=47  Identities=23%  Similarity=0.690  Sum_probs=37.6

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      ..|++|-+-++   ++++..|+|.||..||.+-+. ++..||.|-..+...
T Consensus       644 LkCs~Cn~R~K---d~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan  691 (698)
T KOG0978|consen  644 LKCSVCNTRWK---DAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN  691 (698)
T ss_pred             eeCCCccCchh---hHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence            67999976554   555666999999999999996 666899998776544

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=95.88  E-value=0.0022  Score=63.60  Aligned_cols=50  Identities=20%  Similarity=0.538  Sum_probs=38.4

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .-..|.+|.--|-  +.-.+.-|-|.||+.||...|...++||.|...+-..
T Consensus        14 ~~itC~LC~GYli--DATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   14 PHITCRLCGGYLI--DATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             cceehhhccceee--cchhHHHHHHHHHHHHHHHHHHHhccCCccceeccCc
Confidence            3478999976554  2222334999999999999999999999998877443

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=95.86  E-value=0.0031  Score=55.35  Aligned_cols=38  Identities=16%  Similarity=0.424  Sum_probs=31.1

Q ss_pred             CCcccccCCccccCCCeEEcccc------CccchhhHHHHHhcC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCK------HIYHGECILPWLSMR  222 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~------H~FH~~CI~~WL~~~  222 (374)
                      ..+|.||++.+...+.++.++|+      |+||.+|+.+|-+.+
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~   69 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRER   69 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhc
Confidence            36799999998876678888876      999999999994333

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>PHA02862 5L protein; Provisional

Probab=95.70  E-value=0.0067  Score=53.85  Aligned_cols=47  Identities=19%  Similarity=0.650  Sum_probs=35.1

Q ss_pred             CCcccccCCccccCCCeEEcccc-----CccchhhHHHHHh--cCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCK-----HIYHGECILPWLS--MRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~WL~--~~~sCPvCR~~l~~~  235 (374)
                      +..|-||+++-+  +.  .-||.     ..-|.+|+..|++  ++.+|++|+.+...+
T Consensus         2 ~diCWIC~~~~~--e~--~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik   55 (156)
T PHA02862          2 SDICWICNDVCD--ER--NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIK   55 (156)
T ss_pred             CCEEEEecCcCC--CC--cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEE
Confidence            367999988743  22  35654     5789999999996  455899999987544

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.66  E-value=0.0081  Score=60.22  Aligned_cols=49  Identities=22%  Similarity=0.502  Sum_probs=41.8

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ++..|+||   |...-.++..||+|.=|+.||.+.|...+.|=.|++.+...
T Consensus       421 Ed~lCpIC---yA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~~  469 (489)
T KOG4692|consen  421 EDNLCPIC---YAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVIDV  469 (489)
T ss_pred             ccccCcce---ecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeeeh
Confidence            46889999   44445677889999999999999999999999999987653

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=95.53  E-value=0.0054  Score=57.07  Aligned_cols=44  Identities=18%  Similarity=0.582  Sum_probs=38.5

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      ..|.||.++|+   ..+...|+|.||..|...-++....|-+|-...
T Consensus       197 F~C~iCKkdy~---spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t  240 (259)
T COG5152         197 FLCGICKKDYE---SPVVTECGHSFCSLCAIRKYQKGDECGVCGKAT  240 (259)
T ss_pred             eeehhchhhcc---chhhhhcchhHHHHHHHHHhccCCcceecchhh
Confidence            68999999998   567788999999999999888888999996643

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=95.40  E-value=0.0064  Score=49.88  Aligned_cols=33  Identities=33%  Similarity=0.753  Sum_probs=27.8

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHH
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECIL  216 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~  216 (374)
                      ..+..|+||...+.. ......||+|.||..|+.
T Consensus        76 ~~~~~C~vC~k~l~~-~~f~~~p~~~v~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGN-SVFVVFPCGHVVHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCC-ceEEEeCCCeEEeccccc
Confidence            346789999998865 578899999999999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.23  E-value=0.017  Score=54.75  Aligned_cols=50  Identities=22%  Similarity=0.669  Sum_probs=40.3

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc--------CCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM--------RNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~--------~~sCPvCR~~l~~~  235 (374)
                      ...|..|...+..++.+ .|-|-|.||++|+..|-..        ...||.|-.+|-..
T Consensus        50 ~pNC~LC~t~La~gdt~-RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp  107 (299)
T KOG3970|consen   50 NPNCRLCNTPLASGDTT-RLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPP  107 (299)
T ss_pred             CCCCceeCCccccCcce-eehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCC
Confidence            46799999998888665 6779999999999999742        23799999988554

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=95.15  E-value=0.017  Score=52.15  Aligned_cols=48  Identities=27%  Similarity=0.731  Sum_probs=35.4

Q ss_pred             CCCcccccCCccccCCCeEEcc--ccC---ccchhhHHHHHh--cCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMP--CKH---IYHGECILPWLS--MRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp--C~H---~FH~~CI~~WL~--~~~sCPvCR~~l~~~  235 (374)
                      .+..|-||.++-.  +.  .-|  |+.   ..|.+|+..|+.  +..+|++|+++....
T Consensus         7 ~~~~CRIC~~~~~--~~--~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~   61 (162)
T PHA02825          7 MDKCCWICKDEYD--VV--TNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIK   61 (162)
T ss_pred             CCCeeEecCCCCC--Cc--cCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEE
Confidence            4578999988743  22  346  544   569999999995  445899999987555

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.99  E-value=0.027  Score=54.81  Aligned_cols=52  Identities=29%  Similarity=0.514  Sum_probs=38.8

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHh--cCCCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS--MRNSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~--~~~sCPvCR~~l~~~  235 (374)
                      ...+.+|++|-+.=.  ......+|+|+||..||..-+.  ..-+||.|-.++...
T Consensus       236 ~t~~~~C~~Cg~~Pt--iP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~~l  289 (298)
T KOG2879|consen  236 GTSDTECPVCGEPPT--IPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVEPL  289 (298)
T ss_pred             ccCCceeeccCCCCC--CCeeeccccceeehhhhhhhhcchhhcccCccCCCCcch
Confidence            345689999977532  2445666999999999999775  335899998877654

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.96  E-value=0.011  Score=62.00  Aligned_cols=49  Identities=27%  Similarity=0.712  Sum_probs=39.1

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHh-----cCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-----MRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-----~~~sCPvCR~~l~~~  235 (374)
                      .+.+|.+|.+.-+   +.....|.|.||..||..++.     .+-+||+|...|..+
T Consensus       535 ~~~~C~lc~d~ae---d~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~LsiD  588 (791)
T KOG1002|consen  535 GEVECGLCHDPAE---DYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSID  588 (791)
T ss_pred             CceeecccCChhh---hhHhhhhhHHHHHHHHHHHHHhhhcccCCCCcccccccccc
Confidence            4578999987643   566778999999999999883     345899998887665

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.58  E-value=0.02  Score=57.52  Aligned_cols=43  Identities=30%  Similarity=0.708  Sum_probs=32.1

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      ...|.||+++.+   ..+.+||+|+-+  |+.-- +...+||+||..+.
T Consensus       305 p~lcVVcl~e~~---~~~fvpcGh~cc--ct~cs-~~l~~CPvCR~rI~  347 (355)
T KOG1571|consen  305 PDLCVVCLDEPK---SAVFVPCGHVCC--CTLCS-KHLPQCPVCRQRIR  347 (355)
T ss_pred             CCceEEecCCcc---ceeeecCCcEEE--chHHH-hhCCCCchhHHHHH
Confidence            478999999866   488999999976  65442 33345999998763

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.50  E-value=0.026  Score=41.18  Aligned_cols=45  Identities=22%  Similarity=0.494  Sum_probs=22.2

Q ss_pred             ccccCCccccCC-CeEEccccCccchhhHHHHHh-cCCCCCccCccC
Q 017269          188 CAVCKEPFQLNS-EAREMPCKHIYHGECILPWLS-MRNSCPLCRREL  232 (374)
Q Consensus       188 C~ICle~f~~~~-~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l  232 (374)
                      |++|.+++...+ ...--+|++.++..|...-++ ....||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence            789999984332 333344889999999888775 567899999864

>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO)

Probab=94.08  E-value=0.018  Score=40.95  Aligned_cols=41  Identities=27%  Similarity=0.732  Sum_probs=23.3

Q ss_pred             ccccCCccccCCCeEEccccCccchhhHHHHHhcCC--CCCcc
Q 017269          188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN--SCPLC  228 (374)
Q Consensus       188 C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~--sCPvC  228 (374)
                      |.+|.+....|.....-.|.-.+|..|+..+++...  .||.|
T Consensus         1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C   43 (43)
T PF08746_consen    1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC   43 (43)
T ss_dssp             -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred             CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence            778888766554333334999999999999997655  79988

; PDB: 3NW0_A 2CT0_A.

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=94.06  E-value=0.037  Score=55.52  Aligned_cols=48  Identities=29%  Similarity=0.709  Sum_probs=39.0

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHH--HhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPW--LSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~W--L~~~~sCPvCR~~l~~  234 (374)
                      +...|.||-+.+.   ....+||+|..|..|....  |...+.||+||+++.+
T Consensus        60 en~~C~ICA~~~T---Ys~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e~  109 (493)
T COG5236          60 ENMNCQICAGSTT---YSARYPCGHQICHACAVRLRALYMQKGCPLCRTETEA  109 (493)
T ss_pred             ccceeEEecCCce---EEEeccCCchHHHHHHHHHHHHHhccCCCccccccce
Confidence            3478999977654   6789999999999998764  4578899999998744

>PHA03096 p28-like protein; Provisional

Probab=93.99  E-value=0.026  Score=55.57  Aligned_cols=47  Identities=17%  Similarity=0.342  Sum_probs=33.3

Q ss_pred             CcccccCCccccC----CCeEEcc-ccCccchhhHHHHHhcC---C---CCCccCccC
Q 017269          186 SHCAVCKEPFQLN----SEAREMP-CKHIYHGECILPWLSMR---N---SCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~----~~~~~lp-C~H~FH~~CI~~WL~~~---~---sCPvCR~~l  232 (374)
                      ..|.||+|.....    ..-.+|+ |.|.|+..||..|-...   .   .||.|+..+
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~~~~~~  236 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRRLNTVI  236 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccchhhHH
Confidence            6799999986542    2345676 99999999999998422   2   455555544

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.88  E-value=0.022  Score=58.16  Aligned_cols=47  Identities=19%  Similarity=0.525  Sum_probs=37.0

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC--------CCCCccCc
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR--------NSCPLCRR  230 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~--------~sCPvCR~  230 (374)
                      .-..|.||.++.......+.+||.|.||+.|+..++..+        -.||-|..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            357899999986654788899999999999999998421        15877654

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=93.74  E-value=0.051  Score=54.11  Aligned_cols=47  Identities=17%  Similarity=0.328  Sum_probs=35.5

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      ....|+||+..-...  .+..--+-+||..||...+..++.|||--.++
T Consensus       299 ~~~~CpvClk~r~Np--tvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~  345 (357)
T KOG0826|consen  299 DREVCPVCLKKRQNP--TVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA  345 (357)
T ss_pred             ccccChhHHhccCCC--ceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence            347899998875432  22222589999999999999999999865544

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=0.031  Score=54.93  Aligned_cols=45  Identities=20%  Similarity=0.521  Sum_probs=39.1

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      ..|-||.+.|.   ..++..|+|.||..|...-++....|.+|-..+-
T Consensus       242 f~c~icr~~f~---~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~  286 (313)
T KOG1813|consen  242 FKCFICRKYFY---RPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTH  286 (313)
T ss_pred             ccccccccccc---cchhhcCCceeehhhhccccccCCcceecccccc
Confidence            56999999997   5667889999999999998888899999977653

>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]

Probab=93.56  E-value=0.037  Score=60.89  Aligned_cols=49  Identities=24%  Similarity=0.699  Sum_probs=35.3

Q ss_pred             CCCcccccCCccccCCCeEE-ccccCccchhhHHHHHhcC-------CCCCccCccC
Q 017269          184 KESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMR-------NSCPLCRREL  232 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~-------~sCPvCR~~l  232 (374)
                      ...+|.||.+.+...+.+-. -.|-|+||..||..|-+..       -.||.|....
T Consensus       190 ~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~  246 (950)
T KOG1952|consen  190 RKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS  246 (950)
T ss_pred             CceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence            34789999998875443222 2388999999999998421       2699998543

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.39  E-value=0.018  Score=56.54  Aligned_cols=42  Identities=26%  Similarity=0.667  Sum_probs=32.6

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      +..|+||++.-   -+...|+|+|+ -|..|-+.    -+.||+||+.|.
T Consensus       300 ~~LC~ICmDaP---~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~  342 (350)
T KOG4275|consen  300 RRLCAICMDAP---RDCVFLECGHMVTCTKCGKR----MNECPICRQYIV  342 (350)
T ss_pred             HHHHHHHhcCC---cceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence            57899997753   47889999997 57777544    358999998764

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.35  E-value=0.069  Score=51.39  Aligned_cols=52  Identities=15%  Similarity=0.361  Sum_probs=44.2

Q ss_pred             CCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ...|+||.+.+.....+..| ||+|+|+.+|+.+.+.....||+|-.++...+
T Consensus       221 ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd  273 (303)
T KOG3039|consen  221 RYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD  273 (303)
T ss_pred             ceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence            47899999999876655555 59999999999999999999999988886663

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=93.15  E-value=0.07  Score=52.62  Aligned_cols=43  Identities=28%  Similarity=0.616  Sum_probs=32.5

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCc
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRR  230 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~  230 (374)
                      ..|+.|..-+.  +.+++-.|+|.||..||..-|. ....||.|..
T Consensus       275 LkCplc~~Llr--np~kT~cC~~~fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLR--NPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhh--CcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence            67999977654  3344423999999999998885 5568999955

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.97  E-value=0.0066  Score=61.45  Aligned_cols=51  Identities=33%  Similarity=0.755  Sum_probs=44.2

Q ss_pred             CcccccCCccccC-CCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          186 SHCAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       186 ~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ..|+||.+.++.. +++..+-|+|++|..||.+||.....||.|+.+|+...
T Consensus       197 ~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~~~  248 (465)
T KOG0827|consen  197 GSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPKNG  248 (465)
T ss_pred             hhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhhhh
Confidence            6799999888765 56777789999999999999988889999999997653

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=92.51  E-value=0.055  Score=51.75  Aligned_cols=48  Identities=21%  Similarity=0.537  Sum_probs=36.1

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNEAN  237 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~~~  237 (374)
                      .+|..|... ..++....+.|.|+||..|...   .+. .||+|+..+.....
T Consensus         4 VhCn~C~~~-~~~~~f~LTaC~HvfC~~C~k~---~~~~~C~lCkk~ir~i~l   52 (233)
T KOG4739|consen    4 VHCNKCFRF-PSQDPFFLTACRHVFCEPCLKA---SSPDVCPLCKKSIRIIQL   52 (233)
T ss_pred             EEecccccc-CCCCceeeeechhhhhhhhccc---CCccccccccceeeeeec
Confidence            368888663 3467777888999999999765   233 89999998766544

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=92.47  E-value=0.09  Score=39.40  Aligned_cols=46  Identities=24%  Similarity=0.683  Sum_probs=34.4

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ...|-.|..   .+.+-.++||+|+.+..|..-  ++-+.||+|-+++...
T Consensus         7 ~~~~~~~~~---~~~~~~~~pCgH~I~~~~f~~--~rYngCPfC~~~~~~~   52 (55)
T PF14447_consen    7 EQPCVFCGF---VGTKGTVLPCGHLICDNCFPG--ERYNGCPFCGTPFEFD   52 (55)
T ss_pred             ceeEEEccc---cccccccccccceeeccccCh--hhccCCCCCCCcccCC
Confidence            356777744   345677899999999999554  4777899998877554

>PF04641 Rtf2: Rtf2 RING-finger

Probab=92.43  E-value=0.24  Score=47.89  Aligned_cols=53  Identities=17%  Similarity=0.453  Sum_probs=40.2

Q ss_pred             cCCCcccccCCccccCCC-eEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      .....|+|+..+|..... +...||+|+|...+|..- .....||+|-.++...+
T Consensus       111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~-k~~~~Cp~c~~~f~~~D  164 (260)
T PF04641_consen  111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKEL-KKSKKCPVCGKPFTEED  164 (260)
T ss_pred             CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhh-cccccccccCCccccCC
Confidence            345899999999954444 445579999999999986 33557999988876553

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.37  E-value=0.092  Score=51.21  Aligned_cols=47  Identities=26%  Similarity=0.654  Sum_probs=38.7

Q ss_pred             CcccccCCccccCC---CeEEccccCccchhhHHHHHhcC-CCCCccCccC
Q 017269          186 SHCAVCKEPFQLNS---EAREMPCKHIYHGECILPWLSMR-NSCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~~---~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l  232 (374)
                      ..|-||-++|...+   ..+.|.|+|.|+..|+.+-+... ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence            56999999998763   45677799999999998877644 4799999985

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.10  E-value=0.07  Score=58.81  Aligned_cols=42  Identities=33%  Similarity=0.820  Sum_probs=33.0

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      ..|..|--.++.  ..+..-|+|.||.+|+.   .....||-|+.++
T Consensus       841 skCs~C~~~Ldl--P~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~  882 (933)
T KOG2114|consen  841 SKCSACEGTLDL--PFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL  882 (933)
T ss_pred             eeecccCCcccc--ceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence            589999766543  56677799999999987   4556899998854

>COG0375 HybF Zn finger protein HypA/HybF (possibly regulating hydrogenase expression) [General function prediction only]

Probab=92.01  E-value=0.11  Score=44.69  Aligned_cols=35  Identities=23%  Similarity=0.616  Sum_probs=28.2

Q ss_pred             CCceeecccCcceeeccCCCCCccCCCCCCCceEEecc
Q 017269            5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIET   42 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~~   42 (374)
                      ....||..|++.+...   .-+..||.|+|..+.-+..
T Consensus        68 p~~~~C~~C~~~~~~e---~~~~~CP~C~s~~~~i~~G  102 (115)
T COG0375          68 PAECWCLDCGQEVELE---ELDYRCPKCGSINLRIIGG  102 (115)
T ss_pred             ccEEEeccCCCeecch---hheeECCCCCCCceEEecC
Confidence            4578999999999874   4457799999999987754

>PF14446 Prok-RING_1: Prokaryotic RING finger family 1

Probab=91.60  E-value=0.19  Score=37.55  Aligned_cols=33  Identities=27%  Similarity=0.657  Sum_probs=29.2

Q ss_pred             CCcccccCCccccCCCeEEcc-ccCccchhhHHH
Q 017269          185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILP  217 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~  217 (374)
                      ...|.+|-+.|+.++++++.| |+-.||.+|...
T Consensus         5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~   38 (54)
T PF14446_consen    5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK   38 (54)
T ss_pred             CccChhhCCcccCCCCEEECCCCCCcccHHHHhh
Confidence            467999999999899999999 999999999543

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.44  E-value=0.079  Score=52.51  Aligned_cols=43  Identities=33%  Similarity=0.818  Sum_probs=30.6

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      -.|--|-..  +.-.-+.+||+|+||.+|...  ...+.||.|-..|
T Consensus        91 HfCd~Cd~P--I~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~V  133 (389)
T KOG2932|consen   91 HFCDRCDFP--IAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRV  133 (389)
T ss_pred             EeecccCCc--ceeeecccccchhhhhhhhhc--CccccCcCcccHH
Confidence            346666333  333557889999999999754  3466899997766

>KOG3053 consensus Uncharacterized conserved protein [Function unknown]

Probab=90.71  E-value=0.098  Score=50.58  Aligned_cols=53  Identities=28%  Similarity=0.597  Sum_probs=34.5

Q ss_pred             ccCCCcccccCCccccCC-CeEEcccc-----CccchhhHHHHHhcC--------CCCCccCccCCC
Q 017269          182 VAKESHCAVCKEPFQLNS-EAREMPCK-----HIYHGECILPWLSMR--------NSCPLCRRELPN  234 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~-~~~~lpC~-----H~FH~~CI~~WL~~~--------~sCPvCR~~l~~  234 (374)
                      .+.+..|-||...=++.- ..-+-||.     |..|..||..|+..+        -+||-|+++...
T Consensus        17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYii   83 (293)
T KOG3053|consen   17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYII   83 (293)
T ss_pred             cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhee
Confidence            344678999966533221 11234553     889999999999322        269999998633

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=90.48  E-value=0.17  Score=50.69  Aligned_cols=52  Identities=27%  Similarity=0.618  Sum_probs=36.0

Q ss_pred             CCCcccccCCccccCCC-eEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      +++.|+.|+|++...++ ..-.||+-..|.-|....-+ .+..||.||.....+
T Consensus        13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~de   66 (480)
T COG5175          13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYDDE   66 (480)
T ss_pred             ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcccc
Confidence            34669999999987653 44566887777777443222 456899999976544

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=89.48  E-value=0.31  Score=49.53  Aligned_cols=30  Identities=27%  Similarity=0.773  Sum_probs=23.3

Q ss_pred             ccCccchhhHHHHHh-------------cCCCCCccCccCCCC
Q 017269          206 CKHIYHGECILPWLS-------------MRNSCPLCRRELPNE  235 (374)
Q Consensus       206 C~H~FH~~CI~~WL~-------------~~~sCPvCR~~l~~~  235 (374)
                      |.-++|.+|+-+|+.             .+-.||.||++....
T Consensus       311 CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCil  353 (358)
T PF10272_consen  311 CRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCIL  353 (358)
T ss_pred             ccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceee
Confidence            777889999999983             233799999986543

They are purported to be transmembrane protein-precursors but their function is unknown.

>KOG1940 consensus Zn-finger protein [General function prediction only]

Probab=89.35  E-value=0.17  Score=49.58  Aligned_cols=45  Identities=29%  Similarity=0.769  Sum_probs=37.9

Q ss_pred             CcccccCCccccC-CCeEEccccCccchhhHHHHHhcCCCCCccCc
Q 017269          186 SHCAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRNSCPLCRR  230 (374)
Q Consensus       186 ~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~  230 (374)
                      ..|+||.+.+-.. ..+..++|+|.-|..|+......+-+||+|..
T Consensus       159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~  204 (276)
T KOG1940|consen  159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK  204 (276)
T ss_pred             CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence            4499999876554 46778999999999999998877799999977

>COG2093 DNA-directed RNA polymerase, subunit E'' [Transcription]

Probab=89.25  E-value=0.18  Score=38.68  Aligned_cols=28  Identities=32%  Similarity=0.731  Sum_probs=21.8

Q ss_pred             eecccCcceeeccCCCCCccCCCCCCC-ceEEec
Q 017269            9 WCYRCNRIIRIQSRTEDAIVCPDCHTG-FIEQIE   41 (374)
Q Consensus         9 WCh~C~r~V~~~~~~~~~~~CP~C~~g-FvEEi~   41 (374)
                      =|++|.+.+.     ++.-+||.|++. |.||-.
T Consensus         6 AC~~Ck~l~~-----~d~e~CP~Cgs~~~te~W~   34 (64)
T COG2093           6 ACKNCKRLTP-----EDTEICPVCGSTDLTEEWF   34 (64)
T ss_pred             HHhhccccCC-----CCCccCCCCCCcccchhhc
Confidence            3999998774     444689999998 888764

>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]

Probab=89.13  E-value=0.11  Score=57.64  Aligned_cols=37  Identities=22%  Similarity=0.740  Sum_probs=30.0

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHH
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL  219 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL  219 (374)
                      +...+.|.+|...+.. ....+.||+|.||.+||.+-.
T Consensus       814 ~ep~d~C~~C~~~ll~-~pF~vf~CgH~FH~~Cl~~~v  850 (911)
T KOG2034|consen  814 LEPQDSCDHCGRPLLI-KPFYVFPCGHCFHRDCLIRHV  850 (911)
T ss_pred             ecCccchHHhcchhhc-CcceeeeccchHHHHHHHHHH
Confidence            4456899999887654 467789999999999998764

>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=88.87  E-value=0.27  Score=45.30  Aligned_cols=49  Identities=27%  Similarity=0.821  Sum_probs=33.6

Q ss_pred             CcccccCCcccc-----CCCeEEccccCccchhhHHHHHhc----CC-------CCCccCccCCCC
Q 017269          186 SHCAVCKEPFQL-----NSEAREMPCKHIYHGECILPWLSM----RN-------SCPLCRRELPNE  235 (374)
Q Consensus       186 ~~C~ICle~f~~-----~~~~~~lpC~H~FH~~CI~~WL~~----~~-------sCPvCR~~l~~~  235 (374)
                      ..|.||.- |..     +...-...|+.-||.-|+..||+.    ++       .||.|-.++..+
T Consensus       166 ~~cgicya-yqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~PialK  230 (234)
T KOG3268|consen  166 GACGICYA-YQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIALK  230 (234)
T ss_pred             hcccceee-eecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCcceee
Confidence            46889954 222     223334559999999999999942    21       599998877544

>COG5270 PUA domain (predicted RNA-binding domain) [Translation, ribosomal structure and biogenesis]

Probab=87.63  E-value=0.48  Score=43.89  Aligned_cols=41  Identities=24%  Similarity=0.541  Sum_probs=27.6

Q ss_pred             CceeecccCcceeeccCCCCCccCCCCCCCceEEec-cCCCCCCCCCchh
Q 017269            6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE-TIQRPSNERYPAA   54 (374)
Q Consensus         6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~-~~~~~~~~~f~~~   54 (374)
                      .-|||..|+-.+..       -.|+-|+++| ||+. .++...+.-||..
T Consensus        13 ~iyWCe~cNlPl~~-------~~c~~cg~~~-~~l~LTpPaD~R~~fp~d   54 (202)
T COG5270          13 PIYWCEKCNLPLLG-------RRCSVCGSKV-EELRLTPPADVRPAFPYD   54 (202)
T ss_pred             ceeehhhCCCcccc-------ccccccCCcc-eEEEeCCCCCccccCchH
Confidence            46999999988754       4899999666 4554 4443344455543

>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]

Probab=87.58  E-value=0.41  Score=55.17  Aligned_cols=43  Identities=23%  Similarity=0.607  Sum_probs=36.6

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCc
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRR  230 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~  230 (374)
                      ..|.||++.+..  .-.+.-|+|.++..|+..|+..+..||.|+.
T Consensus      1154 ~~c~ic~dil~~--~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ks 1196 (1394)
T KOG0298|consen 1154 FVCEICLDILRN--QGGIAGCGHEPCCRCDELWLYASSRCPICKS 1196 (1394)
T ss_pred             cchHHHHHHHHh--cCCeeeechhHhhhHHHHHHHHhccCcchhh
Confidence            589999998763  2345559999999999999999999999974

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=86.90  E-value=0.26  Score=54.07  Aligned_cols=48  Identities=25%  Similarity=0.557  Sum_probs=39.1

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCC--CCCccCccCCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN--SCPLCRRELPNEAN  237 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~~  237 (374)
                      ..|.||++    -+.+...+|+|.||..|+..-+....  .||+||..+..+..
T Consensus       455 ~~c~ic~~----~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l  504 (674)
T KOG1001|consen  455 HWCHICCD----LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKL  504 (674)
T ss_pred             cccccccc----cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHH
Confidence            78999988    34777888999999999999886433  59999998866643

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=86.40  E-value=0.35  Score=45.58  Aligned_cols=39  Identities=31%  Similarity=0.775  Sum_probs=29.1

Q ss_pred             cccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccC
Q 017269          187 HCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRREL  232 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l  232 (374)
                      .|-+|.+   ....+..+||.|. +|..|=..    -.+||+|+...
T Consensus       160 ~Cr~C~~---~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~  199 (207)
T KOG1100|consen  160 SCRKCGE---REATVLLLPCRHLCLCGICDES----LRICPICRSPK  199 (207)
T ss_pred             cceecCc---CCceEEeecccceEeccccccc----CccCCCCcChh
Confidence            3888854   4557999999985 88888543    44699998754

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=85.97  E-value=0.28  Score=35.78  Aligned_cols=44  Identities=27%  Similarity=0.670  Sum_probs=25.5

Q ss_pred             cccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          187 HCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .|.-|+-+.+   .  ...|+ |..+..|+...|.....||+|..+||..
T Consensus         4 nCKsCWf~~k---~--Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPtk   48 (50)
T PF03854_consen    4 NCKSCWFANK---G--LIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPTK   48 (50)
T ss_dssp             ---SS-S--S---S--EEE-SS-EEEHHHHHHT-SSSSEETTTTEE----
T ss_pred             cChhhhhcCC---C--eeeecchhHHHHHHHHHhccccCCCcccCcCccc
Confidence            4666765432   2  33365 9999999999999999999999999875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=85.72  E-value=0.44  Score=46.25  Aligned_cols=51  Identities=24%  Similarity=0.565  Sum_probs=37.6

Q ss_pred             CCcccccCCccccCCC-eEEcccc-----CccchhhHHHHHh--cCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSE-AREMPCK-----HIYHGECILPWLS--MRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~-~~~lpC~-----H~FH~~CI~~WL~--~~~sCPvCR~~l~~~  235 (374)
                      +..|-||.++...... ..+.||.     +..|..|+..|+.  ...+|.+|.......
T Consensus        78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~  136 (323)
T KOG1609|consen   78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINV  136 (323)
T ss_pred             CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceec
Confidence            4679999997654322 5577754     5679999999996  556899998865443

>PRK03681 hypA hydrogenase nickel incorporation protein; Validated

Probab=85.64  E-value=0.66  Score=39.57  Aligned_cols=35  Identities=23%  Similarity=0.759  Sum_probs=25.4

Q ss_pred             CCceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269            5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE   41 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~   41 (374)
                      ....||..|...+...  ......||.|++.-++-+.
T Consensus        68 p~~~~C~~Cg~~~~~~--~~~~~~CP~Cgs~~~~i~~  102 (114)
T PRK03681         68 EAECWCETCQQYVTLL--TQRVRRCPQCHGDMLRIVA  102 (114)
T ss_pred             CcEEEcccCCCeeecC--CccCCcCcCcCCCCcEEcc
Confidence            4679999999887653  2222569999998776553

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=84.63  E-value=0.43  Score=50.96  Aligned_cols=49  Identities=31%  Similarity=0.790  Sum_probs=40.7

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDR  239 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~~  239 (374)
                      ....|.||++++    ..+..+|.   |..|+..|+..+.+||+|+..+..++...
T Consensus       478 ~~~~~~~~~~~~----~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~~~  526 (543)
T KOG0802|consen  478 PNDVCAICYQEM----SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDFLS  526 (543)
T ss_pred             ccCcchHHHHHH----Hhcccccc---chhHHHhhhhhccccCCCchhhhcccccC
Confidence            357899998886    56677788   99999999999999999999887775443

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=84.56  E-value=0.74  Score=40.54  Aligned_cols=50  Identities=22%  Similarity=0.511  Sum_probs=35.9

Q ss_pred             CCcccccCCccccCCCeEEcc---ccCccchhhHHHHH---hcCCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMP---CKHIYHGECILPWL---SMRNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~WL---~~~~sCPvCR~~l~~~~  236 (374)
                      -.+|.||.|.-.+  +...-|   |+-..|..|-....   ..+..||+|++......
T Consensus        80 lYeCnIC~etS~e--e~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKss~  135 (140)
T PF05290_consen   80 LYECNICKETSAE--ERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKSSS  135 (140)
T ss_pred             ceeccCcccccch--hhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccccc
Confidence            4789999997442  333334   89888888866544   36779999999887653

>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]

Probab=84.32  E-value=0.76  Score=50.85  Aligned_cols=57  Identities=21%  Similarity=0.574  Sum_probs=40.3

Q ss_pred             cCCCcccccCCccccCCCeEEcccc-----CccchhhHHHHHh--cCCCCCccCccCCCCCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCK-----HIYHGECILPWLS--MRNSCPLCRRELPNEANDRG  240 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~WL~--~~~sCPvCR~~l~~~~~~~~  240 (374)
                      +++..|.||..+=..++ ..-=||+     ...|.+|+..|+.  ....|-+|+.++.-++-..+
T Consensus        10 ~d~~~CRICr~e~~~d~-pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e   73 (1175)
T COG5183          10 EDKRSCRICRTEDIRDD-PLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKE   73 (1175)
T ss_pred             ccchhceeecCCCCCCC-cCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeeccc
Confidence            34578999988744443 3345666     3589999999996  44579999998866654433

>TIGR00100 hypA hydrogenase nickel insertion protein HypA

Probab=84.02  E-value=0.99  Score=38.53  Aligned_cols=34  Identities=21%  Similarity=0.472  Sum_probs=25.9

Q ss_pred             CCceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269            5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE   41 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~   41 (374)
                      ....||..|...+.+.   .....||.|++..++-+.
T Consensus        68 p~~~~C~~Cg~~~~~~---~~~~~CP~Cgs~~~~i~~  101 (115)
T TIGR00100        68 PVECECEDCSEEVSPE---IDLYRCPKCHGIMLQVRA  101 (115)
T ss_pred             CcEEEcccCCCEEecC---CcCccCcCCcCCCcEEec
Confidence            4678999999887663   234789999998876553

In Hpylori, hypA mutant abolished hydrogenase activity and decrease in urease activity. Nickel supplementation in media restored urease activity and partial hydrogenase activity. HypA probably involved in inserting Ni in enzymes.

>PRK00564 hypA hydrogenase nickel incorporation protein; Provisional

Probab=83.79  E-value=0.95  Score=38.78  Aligned_cols=35  Identities=20%  Similarity=0.465  Sum_probs=25.3

Q ss_pred             CCceeecccCcceeeccCCCCCccCCCCCCCceEEec
Q 017269            5 GLSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQIE   41 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi~   41 (374)
                      ....||..|.....+.  ......||.|++..++-+.
T Consensus        69 p~~~~C~~Cg~~~~~~--~~~~~~CP~Cgs~~~~i~~  103 (117)
T PRK00564         69 KVELECKDCSHVFKPN--ALDYGVCEKCHSKNVIITQ  103 (117)
T ss_pred             CCEEEhhhCCCccccC--CccCCcCcCCCCCceEEec
Confidence            4679999999776553  2233459999999887553

>PRK00398 rpoP DNA-directed RNA polymerase subunit P; Provisional

Probab=83.37  E-value=1.3  Score=31.44  Aligned_cols=34  Identities=24%  Similarity=0.586  Sum_probs=26.7

Q ss_pred             CceeecccCcceeeccCCCCCccCCCCCCCceEEe
Q 017269            6 LSYWCYRCNRIIRIQSRTEDAIVCPDCHTGFIEQI   40 (374)
Q Consensus         6 ~~YWCh~C~r~V~~~~~~~~~~~CP~C~~gFvEEi   40 (374)
                      ..|=|-+|...+.... ....+.||+|++.++-..
T Consensus         2 ~~y~C~~CG~~~~~~~-~~~~~~Cp~CG~~~~~~~   35 (46)
T PRK00398          2 AEYKCARCGREVELDE-YGTGVRCPYCGYRILFKE   35 (46)
T ss_pred             CEEECCCCCCEEEECC-CCCceECCCCCCeEEEcc
Confidence            4689999999988863 233799999999988643

>PF13240 zinc_ribbon_2: zinc-ribbon domain

Probab=81.61  E-value=0.74  Score=28.42  Aligned_cols=23  Identities=39%  Similarity=0.983  Sum_probs=17.7

Q ss_pred             eecccCcceeeccCCCCCccCCCCCCCc
Q 017269            9 WCYRCNRIIRIQSRTEDAIVCPDCHTGF   36 (374)
Q Consensus         9 WCh~C~r~V~~~~~~~~~~~CP~C~~gF   36 (374)
                      +|..|-..|.     ++..+||.|+..|
T Consensus         1 ~Cp~CG~~~~-----~~~~fC~~CG~~l   23 (23)
T PF13240_consen    1 YCPNCGAEIE-----DDAKFCPNCGTPL   23 (23)
T ss_pred             CCcccCCCCC-----CcCcchhhhCCcC
Confidence            5889998874     3468999999754

>PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines

Probab=80.84  E-value=0.9  Score=28.95  Aligned_cols=23  Identities=30%  Similarity=0.719  Sum_probs=18.7

Q ss_pred             ecccCcceeeccCCCCCccCCCCCCCce
Q 017269           10 CYRCNRIIRIQSRTEDAIVCPDCHTGFI   37 (374)
Q Consensus        10 Ch~C~r~V~~~~~~~~~~~CP~C~~gFv   37 (374)
                      |-.|...|...     ...||+|+--|.
T Consensus         3 CP~C~~~V~~~-----~~~Cp~CG~~F~   25 (26)
T PF10571_consen    3 CPECGAEVPES-----AKFCPHCGYDFE   25 (26)
T ss_pred             CCCCcCCchhh-----cCcCCCCCCCCc
Confidence            78899988654     579999998874

Several members are annotated as putative helicases.

>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]

Probab=80.35  E-value=1.3  Score=43.77  Aligned_cols=49  Identities=27%  Similarity=0.487  Sum_probs=35.5

Q ss_pred             cccccCCccccCC--CeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269          187 HCAVCKEPFQLNS--EAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE  235 (374)
Q Consensus       187 ~C~ICle~f~~~~--~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~  235 (374)
                      .|++|+.+.-...  ...+-+|.|..|..|+...+... ..||.|-..|-..
T Consensus         2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iLRk~   53 (300)
T KOG3800|consen    2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVILRKN   53 (300)
T ss_pred             CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchhhhc
Confidence            4999987643322  23333699999999999988655 4899998776544

>PRK03824 hypA hydrogenase nickel incorporation protein; Provisional

Probab=80.16  E-value=1.5  Score=38.42  Aligned_cols=36  Identities=17%  Similarity=0.405  Sum_probs=24.9

Q ss_pred             CCceeecccCcceeecc---------------CC---CCCccCCCCCCCceEEe
Q 017269            5 GLSYWCYRCNRIIRIQS---------------RT---EDAIVCPDCHTGFIEQI   40 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~---------------~~---~~~~~CP~C~~gFvEEi   40 (374)
                      ...|||..|........               .+   .....||.|++.-++-+
T Consensus        68 p~~~~C~~CG~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~CP~Cgs~~~~i~  121 (135)
T PRK03824         68 EAVLKCRNCGNEWSLKEVKESLDEEIREAIHFIPEVVHAFLKCPKCGSRDFEIV  121 (135)
T ss_pred             ceEEECCCCCCEEecccccccccccccccccccccccccCcCCcCCCCCCcEEe
Confidence            46899999997776530               00   23467999999876644

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
2ect_A	78	Solution Structure Of The Zinc Finger, C3hc4 Type (		4e-12
2l0b_A	91	Solution Nmr Structure Of Zinc Finger Domain Of E3		2e-11
2ep4_A	74	Solution Structure Of Ring Finger From Human Ring F		1e-07
1iym_A	55	Ring-H2 Finger Domain Of El5 Length = 55		5e-06
2kiz_A	69	Solution Structure Of Arkadia Ring-H2 Finger Domain		6e-06
1x4j_A	75	Solution Structure Of Ring Finger In Ring Finger Pr		2e-05

>pdb|2ECT|A Chain A, Solution Structure Of The Zinc Finger, C3hc4 Type (Ring Finger) Domain Of Ring Finger Protein 126 Length = 78

Iteration: 1
 Score = 68.9 bits (167), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%)
Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
           E HV     C VCKE + L    R++PC H++H  CI+PWL   +SCP+CR+ L  +
Sbjct: 9   EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQ 65

>pdb|2L0B|A Chain A, Solution Nmr Structure Of Zinc Finger Domain Of E3 Ubiquitin-Protein Ligase Praja-1 From Homo Sapiens, Northeast Structural Genomics Consortium (Nesg) Target Hr4710b Length = 91

Iteration: 1
 Score = 67.0 bits (162), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 42/75 (56%), Gaps = 2/75 (2%)
Query: 161 NPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPW 218
           NPPASK +I+++P + + E H  V +E  C +C   +     A E+PC H +H  C+  W
Sbjct: 14  NPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIW 73
Query: 219 LSMRNSCPLCRRELP 233
           L    +CP+CR   P
Sbjct: 74  LQKSGTCPVCRCMFP 88

>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger Protein 24 Length = 74

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 23/57 (40%), Positives = 31/57 (54%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEANDRGSNVG 244
           CAVC E F+   E    PCKH +H +C++ WL +R  CPLC   +   A   G + G
Sbjct: 18  CAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQLSGPSSG 74

>pdb|1IYM|A Chain A, Ring-H2 Finger Domain Of El5 Length = 55

Iteration: 1
 Score = 48.9 bits (115), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 20/43 (46%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Query: 188 CAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCR 229
           CAVC    +   EAR +P C H +H EC+  WL   ++CPLCR
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCR 50

>pdb|2KIZ|A Chain A, Solution Structure Of Arkadia Ring-H2 Finger Domain Length = 69

Iteration: 1
 Score = 48.5 bits (114), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCR----RELPNEA 236
           C +C    +   + R +PC H++H  C+  WL     CP+CR     +LP+E+
Sbjct: 17  CTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLPSES 69

>pdb|1X4J|A Chain A, Solution Structure Of Ring Finger In Ring Finger Protein 38 Length = 75

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 17/52 (32%), Positives = 30/52 (57%)
Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRE 231
           +H ++++ C VC   F+     R +PC H +H +C+  WL    +CP+CR +
Sbjct: 18  NHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRAD 69

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	3e-41
2ect_A	78	Ring finger protein 126; metal binding protein, st	5e-28
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	3e-24
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-21
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	7e-21
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	8e-19
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	3e-16
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	3e-14
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	5e-14
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	9e-14
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	6e-13
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	2e-11
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	2e-11
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	3e-11
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	2e-10
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	6e-10
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	2e-09
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	4e-09
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	5e-09
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	6e-09
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	2e-08
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	1e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	4e-07
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	8e-07
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	1e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-06
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	1e-06
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	2e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	2e-06
3nw0_A	238	Non-structural maintenance of chromosomes element	3e-06
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	4e-06
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	8e-06
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	9e-06
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	2e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	4e-05
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	5e-05
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	6e-05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	9e-05
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	9e-05
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	1e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-04
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	4e-04
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	5e-04

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score =  139 bits (351), Expect = 3e-41
 Identities = 28/88 (31%), Positives = 43/88 (48%), Gaps = 2/88 (2%)

Query: 148 LTQLDFNGVTRFVNPPASKAAIESMPVVTIAESHVAK--ESHCAVCKEPFQLNSEAREMP 205
           +     +      NPPASK +I+++P + + E H A   E  C +C   +     A E+P
Sbjct: 1   MGHHHHHHSHMVANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELP 60

Query: 206 CKHIYHGECILPWLSMRNSCPLCRRELP 233
           C H +H  C+  WL    +CP+CR   P
Sbjct: 61  CHHYFHKPCVSIWLQKSGTCPVCRCMFP 88

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score =  104 bits (260), Expect = 5e-28
 Identities = 29/70 (41%), Positives = 39/70 (55%), Gaps = 2/70 (2%)

Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP--NEA 236
           E HV     C VCKE + L    R++PC H++H  CI+PWL   +SCP+CR+ L   N A
Sbjct: 9   EEHVGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNTA 68

Query: 237 NDRGSNVGGG 246
            +     G G
Sbjct: 69  TNPPGLTGVG 78

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 93.9 bits (234), Expect = 3e-24
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 1/70 (1%)

Query: 164 ASKAAIESMPVVTIAESHVAKE-SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR 222
            S  +   +P      ++   E + C VC   F+     R +PC H +H +C+  WL   
Sbjct: 1   GSSGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKAN 60

Query: 223 NSCPLCRREL 232
            +CP+CR + 
Sbjct: 61  RTCPICRADS 70

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 86.4 bits (214), Expect = 2e-21
 Identities = 23/66 (34%), Positives = 32/66 (48%)

Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 238
              +     CAVC E F+   E    PCKH +H +C++ WL +R  CPLC   +   A  
Sbjct: 9   VKELNLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQL 68

Query: 239 RGSNVG 244
            G + G
Sbjct: 69  SGPSSG 74

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 84.3 bits (209), Expect = 7e-21
 Identities = 15/53 (28%), Positives = 26/53 (49%)

Query: 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237
           E  C +C    +   + R +PC H++H  C+  WL     CP+CR ++  +  
Sbjct: 14  EEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQLP 66

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 79.0 bits (195), Expect = 8e-19
 Identities = 15/66 (22%), Positives = 26/66 (39%), Gaps = 4/66 (6%)

Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAND 238
              +  E  C +C +          +PC H +  +CI  W     +CP+CR ++      
Sbjct: 9   VKQLTDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGANES 64

Query: 239 RGSNVG 244
            G + G
Sbjct: 65  SGPSSG 70

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 15/47 (31%), Positives = 19/47 (40%), Gaps = 1/47 (2%)

Query: 185 ESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMRNSCPLCRR 230
            S C +C E    +   A  +PC H+ H  C    L     CPLC  
Sbjct: 5   SSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSG 51

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 65.7 bits (161), Expect = 3e-14
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 188 CAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRREL 232
           CAVC    +   EAR +P C H +H EC+  WL   ++CPLCR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 65.5 bits (160), Expect = 5e-14
 Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 2/48 (4%)

Query: 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
              C +C E    ++ +  +PC H +   CI  W+    +CPLC+  +
Sbjct: 5   AERCPICLEDP--SNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPV 50

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 65.3 bits (159), Expect = 9e-14
 Identities = 13/53 (24%), Positives = 21/53 (39%), Gaps = 1/53 (1%)

Query: 181 HVAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRREL 232
            V     C  C+   +          C H +H  C+  W+   N CPLC+++ 
Sbjct: 22  RVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDW 74

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 62.2 bits (151), Expect = 6e-13
 Identities = 12/52 (23%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 188 CAVCKEPF----QLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
           C +C + +    Q         C H++  +C+   L   N+CP CR+++ ++
Sbjct: 18  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 69

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A Length = 106

 Score = 59.5 bits (143), Expect = 2e-11
 Identities = 18/94 (19%), Positives = 28/94 (29%), Gaps = 22/94 (23%)

Query: 160 VNPPASKAAIESMPVVTI-------AESHVAKESHCAVCKEPFQLNSEAREMP------- 205
           V+ P+   +        +         +      +CA+C+          +         
Sbjct: 5   VDTPSGTNSGAGKKRFEVKKWNAVALWAWDIVVDNCAICRNHIMDLCIECQANQASATSE 64

Query: 206 --------CKHIYHGECILPWLSMRNSCPLCRRE 231
                   C H +H  CI  WL  R  CPL  RE
Sbjct: 65  ECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNRE 98

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 58.3 bits (141), Expect = 2e-11
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 188 CAVC----KEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           C +C     E  Q         C H++  +C+   L   N+CP CR+++
Sbjct: 13  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 61

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 57.9 bits (140), Expect = 3e-11
 Identities = 13/49 (26%), Positives = 22/49 (44%), Gaps = 4/49 (8%)

Query: 188 CAVC----KEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           C +C     E  Q         C H++  +C+   L   N+CP CR+++
Sbjct: 6   CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 54

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus} Length = 117

 Score = 57.2 bits (137), Expect = 2e-10
 Identities = 16/67 (23%), Positives = 22/67 (32%), Gaps = 15/67 (22%)

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMP---------------CKHIYHGECILPWLSMRNS 224
           +      +CA+C+          +                 C H +H  CI  WL  R  
Sbjct: 43  AWDIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQV 102

Query: 225 CPLCRRE 231
           CPL  RE
Sbjct: 103 CPLDNRE 109

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 54.1 bits (130), Expect = 6e-10
 Identities = 14/48 (29%), Positives = 24/48 (50%), Gaps = 3/48 (6%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
           CA+C +          +PCKH++   C+     +   C LCR+E+P +
Sbjct: 18  CAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPED 62

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 53.4 bits (128), Expect = 2e-09
 Identities = 18/58 (31%), Positives = 26/58 (44%), Gaps = 5/58 (8%)

Query: 178 AESHVAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM-RNSCPLCRRELP 233
           +   +A+   C +C E  +   +AR  P C  +    CI  WL+  R  CP CR  L 
Sbjct: 15  SVESIAEVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQ 69

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 51.7 bits (124), Expect = 4e-09
 Identities = 12/53 (22%), Positives = 18/53 (33%), Gaps = 2/53 (3%)

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
           S +     C++CK             C H +   CI+      N CP C   +
Sbjct: 10  SELTPYILCSICKGYLI--DATTITECLHTFCKSCIVRHFYYSNRCPKCNIVV 60

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.8 bits (124), Expect = 5e-09
 Identities = 11/50 (22%), Positives = 18/50 (36%), Gaps = 3/50 (6%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237
           C +C++ FQ         C+H +   C L        C +C +      N
Sbjct: 18  CFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTGGIFN 64

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1 Length = 114

 Score = 52.5 bits (125), Expect = 6e-09
 Identities = 19/88 (21%), Positives = 26/88 (29%), Gaps = 20/88 (22%)

Query: 163 PASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREM---------------PCK 207
             S    E +      E  VA E  C +C E   + S   +M                C 
Sbjct: 3   SGSSGEPEQVIRKYTEELKVAPEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS 62

Query: 208 HIYHGECILPWLS-----MRNSCPLCRR 230
           H +H  C+L             CP C+ 
Sbjct: 63  HAFHLLCLLAMYCNGNKDGSLQCPSCKT 90

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 74

 Score = 50.3 bits (120), Expect = 2e-08
 Identities = 10/50 (20%), Positives = 14/50 (28%), Gaps = 4/50 (8%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS--CPLCRRELPNE 235
           C +C              C    H  C+  +        CP C    P+E
Sbjct: 18  CNICHSLLIQGQSCE--TCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 65

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 48.7 bits (116), Expect = 1e-07
 Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 2/59 (3%)

Query: 174 VVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRREL 232
              I  + +     C +C   F        + C H +   CI+ +L     CP+C  ++
Sbjct: 4   TTRIKITELNPHLMCVLCGGYFI--DATTIIECLHSFCKTCIVRYLETSKYCPICDVQV 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 48.1 bits (114), Expect = 4e-07
 Identities = 16/50 (32%), Positives = 25/50 (50%), Gaps = 3/50 (6%)

Query: 184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233
            E  C +C E F    EA  + C H +   CI  W+  +  CP+CR+++ 
Sbjct: 63  NELQCIICSEYF---IEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 109

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 46.4 bits (110), Expect = 8e-07
 Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS-CPLCRREL 232
           +H  K   C +C+      ++  E  CKH++   CIL  L +  S CP CR   
Sbjct: 18  AHFVKSISCQICEHIL---ADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 49.4 bits (117), Expect = 1e-06
 Identities = 14/60 (23%), Positives = 23/60 (38%), Gaps = 4/60 (6%)

Query: 177 IAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRRELPNE 235
           +     +    C +C E  +   + +  PC H+    C+  W  S    CP CR E+   
Sbjct: 324 LYCEMGSTFQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT 380

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 46.7 bits (110), Expect = 1e-06
 Identities = 11/52 (21%), Positives = 25/52 (48%), Gaps = 4/52 (7%)

Query: 188 CAVCKEPFQLNSEARE----MPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
           C +C + +    +         C H++  +C+   L   N+CP CR+++ ++
Sbjct: 10  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus} Length = 133

 Score = 46.3 bits (109), Expect = 1e-06
 Identities = 11/49 (22%), Positives = 23/49 (46%), Gaps = 4/49 (8%)

Query: 188 CAVCKEPFQLNSEARE----MPCKHIYHGECILPWLSMRNSCPLCRREL 232
           C +C + +    +         C H++  +C+   L   N+CP CR+++
Sbjct: 75  CPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKI 123

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 44.3 bits (104), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 20/54 (37%), Gaps = 2/54 (3%)

Query: 184 KESHCAVCKEPFQLNSEA-REMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE 235
               C +C EP +++        C +     C     +  N  CP CR+  P +
Sbjct: 10  DPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 45.2 bits (107), Expect = 2e-06
 Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 4/58 (6%)

Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRRELPNE 235
           +  +  +  C +C        EA + PC H +   CI+  +    + CP+    L   
Sbjct: 12  DPPLESKYECPICLMAL---REAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens} Length = 238

 Score = 47.0 bits (111), Expect = 3e-06
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS--CPLCRRELPNE 235
            C +C              C    H  C+  +        CP C    P+E
Sbjct: 182 ICNICHSLLIQGQSCET--CGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 45.8 bits (108), Expect = 4e-06
 Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 4/58 (6%)

Query: 179 ESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE 235
           +  +  +  C +C    +   EA + PC H +   CI+  +    + CP+    L   
Sbjct: 12  DPPLESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN 66

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 43.2 bits (102), Expect = 8e-06
 Identities = 18/72 (25%), Positives = 26/72 (36%), Gaps = 8/72 (11%)

Query: 162 PPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS 220
             A       + V+      +     C +C E F     A  +P C H Y   CI  +LS
Sbjct: 3   SLAESRWPPGLAVM----KTIDDLLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLS 55

Query: 221 MRNSCPLCRREL 232
            +  CP C   +
Sbjct: 56  YKTQCPTCCVTV 67

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens} Length = 141

 Score = 44.3 bits (104), Expect = 9e-06
 Identities = 17/77 (22%), Positives = 28/77 (36%), Gaps = 4/77 (5%)

Query: 160 VNPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL 219
           V PP S   ++     T+  + +  +  C+ C+   +      +  C H Y   C+   L
Sbjct: 6   VTPPGSLELLQPGFSKTLLGTKLEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASIL 62

Query: 220 SMRNS-CPLCRRELPNE 235
           S     C  C  E   E
Sbjct: 63  SSGPQNCAACVHEGIYE 79

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 41.3 bits (97), Expect = 2e-05
 Identities = 9/46 (19%), Positives = 15/46 (32%), Gaps = 4/46 (8%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCRREL 232
           C  C          ++  C H +   C+   L S    C  C+  +
Sbjct: 18  CEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESI 60

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 42.3 bits (99), Expect = 4e-05
 Identities = 13/74 (17%), Positives = 23/74 (31%), Gaps = 4/74 (5%)

Query: 161 NPPASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS 220
           N       +  +         + +   C  C+E      +     C H    +C+     
Sbjct: 54  NQKLWDEVLSHLVEGPNFLKKLEQSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFK 110

Query: 221 MRN-SCPLCRRELP 233
            +  SCP CR +L 
Sbjct: 111 AQVFSCPACRHDLG 124

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 39.7 bits (93), Expect = 5e-05
 Identities = 10/46 (21%), Positives = 18/46 (39%), Gaps = 6/46 (13%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233
           C  C+   +     + +PC H     C+    +    CP+C+   P
Sbjct: 9   CQQCQAEAK---CPKLLPCLHTLCSGCLE---ASGMQCPICQAPWP 48

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster} Length = 381

 Score = 43.7 bits (102), Expect = 6e-05
 Identities = 12/64 (18%), Positives = 17/64 (26%), Gaps = 16/64 (25%)

Query: 185 ESHCAVCKEPFQLNSEAREM-----PCKHIYHGECILPWL-----------SMRNSCPLC 228
           E  C +C        E   +      C    H  C+  W                 CP C
Sbjct: 308 ELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFC 367

Query: 229 RREL 232
           + +L
Sbjct: 368 KAKL 371

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens} Length = 74

 Score = 39.3 bits (92), Expect = 9e-05
 Identities = 16/55 (29%), Positives = 25/55 (45%), Gaps = 6/55 (10%)

Query: 182 VAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWL--SMRNSCPLCRRELP 233
           +  E  C +CK+      +A  +P C + Y  ECI   L  S  ++CP C +   
Sbjct: 12  IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 63

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 40.7 bits (95), Expect = 9e-05
 Identities = 15/64 (23%), Positives = 23/64 (35%), Gaps = 4/64 (6%)

Query: 171 SMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL-SMRNSCPLCR 229
           S     +  S V +   C  C+E            C+H    +C+     +   SCP CR
Sbjct: 38  SGSPFQLFLSKVEETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACR 94

Query: 230 RELP 233
            +L 
Sbjct: 95  YDLG 98

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 40.3 bits (94), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 20/53 (37%), Gaps = 4/53 (7%)

Query: 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNEA 236
           E  C +C E      E   +PC H     C    +   +  CP CRR + +  
Sbjct: 15  ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSSWT 64

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 14/72 (19%), Positives = 26/72 (36%), Gaps = 16/72 (22%)

Query: 163 PASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM 221
             S+AA++ +           K   C+ C    +   E   +  C+HI+   C+   +  
Sbjct: 10  AHSRAALDRL----------EKLLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG- 55

Query: 222 RNSCPLCRRELP 233
              CP+C     
Sbjct: 56  -TGCPVCYTPAW 66

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 65

 Score = 37.6 bits (87), Expect = 4e-04
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 185 ESHCAVCKEPFQLNSEAREM--PCKHIYHGECILPWLSMR-NSCPLCRREL 232
           +  C  CK     N   + M   C H     C+         +CP C   L
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus} Length = 101

 Score = 38.3 bits (88), Expect = 5e-04
 Identities = 12/43 (27%), Positives = 19/43 (44%), Gaps = 3/43 (6%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCR 229
           C  C  P ++    R +PCKH++  +C +         CP C 
Sbjct: 4   CDKCGLPIKVY--GRMIPCKHVFCYDCAILHEKKGDKMCPGCS 44

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.67
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.59
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.49
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.49
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.48
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.48
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	99.38
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	99.38
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.36
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	99.34
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.33
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.31
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	99.3
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.28
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.28
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.26
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.26
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.26
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.21
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.19
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	99.18
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.17
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.16
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	99.15
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.14
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.13
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	99.12
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.09
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	99.08
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	99.06
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	99.05
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	99.05
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	99.05
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	99.01
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.99
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.99
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.99
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.98
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.96
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.95
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.94
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.92
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.88
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.86
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.85
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.84
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.82
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.82
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.81
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.79
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.78
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	98.76
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.74
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.71
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	98.69
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	98.69
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.6
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.56
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.54
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	98.52
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	98.42
2ea5_A	68	Cell growth regulator with ring finger domain prot	98.41
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	98.39
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.39
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	98.25
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	98.23
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	98.23
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.13
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	98.01
3nw0_A	238	Non-structural maintenance of chromosomes element	97.81
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.71
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	94.97
2lri_C	66	Autoimmune regulator; Zn binding protein domain, a	93.43
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	91.43
1wil_A	89	KIAA1045 protein; ring finger domain, structural g	90.33
2kdx_A	119	HYPA, hydrogenase/urease nickel incorporation prot	88.43
2l5u_A	61	Chromodomain-helicase-DNA-binding protein 4; CHD4,	88.18
1we9_A	64	PHD finger family protein; structural genomics, PH	87.03
1mm2_A	61	MI2-beta; PHD, zinc finger, protein scaffold, DNA	84.09
3lqh_A	183	Histone-lysine N-methyltransferase MLL; PHD finger	84.07
2k16_A	75	Transcription initiation factor TFIID subunit 3; p	84.0
3m62_A	968	Ubiquitin conjugation factor E4; armadillo-like re	80.81
3o36_A	184	Transcription intermediary factor 1-alpha; TRIM24,	80.5
1fp0_A	88	KAP-1 corepressor; PHD domain, C3HC4 type zinc bin	80.19
1f62_A	51	Transcription factor WSTF; Zn-finger; NMR {Homo sa	80.16

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.67  E-value=6.9e-17  Score=130.04  Aligned_cols=76  Identities=37%  Similarity=0.892  Sum_probs=67.6

Q ss_pred             ccCCCCCHHHHhcCCceeeeccc--ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          159 FVNPPASKAAIESMPVVTIAESH--VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       159 ~~~ppas~~~i~~lp~~~~~~~~--~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      ....+++++.|+.||.+++....  ...+..|+||++.|..++.++.|||+|.||..||..||+.+.+||+||..++.
T Consensus        12 ~~~~~~s~~~i~~lp~~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           12 VANPPASKESIDALPEILVTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SCCCCCCHHHHHTSCEEECCTTCSSSSSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             cCCCCCCHHHHHhCCCeeecccccccCCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence            56789999999999999887654  33467899999999988889999999999999999999999999999998865

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.59  E-value=3.5e-16  Score=120.88  Aligned_cols=70  Identities=24%  Similarity=0.683  Sum_probs=59.3

Q ss_pred             HHHHhcCCceeeeccc-ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          166 KAAIESMPVVTIAESH-VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       166 ~~~i~~lp~~~~~~~~-~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+.++.||.+++.... ...+..|+||+++|..++.++.|||+|.||..||.+||+.+.+||+||+++...
T Consensus         3 ~~~i~~lp~~~~~~~~~~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~   73 (75)
T 1x4j_A            3 SGSSGQLPSYRFNPNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS   73 (75)
T ss_dssp             CCCCSSCCCEEBCSSSCSSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred             HhhHhhCCcEEecCccccCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence            3456778888876543 334688999999999888889999999999999999999999999999988654

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=110.12  Aligned_cols=55  Identities=38%  Similarity=0.870  Sum_probs=49.2

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      ..+..|+||++.|.....+..|+|+|.||..||..|++.+.+||+||.++.....
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (74)
T 2ep4_A           13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQLAQ   67 (74)
T ss_dssp             CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSCCS
T ss_pred             CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccccc
Confidence            3467899999999988888999999999999999999999999999999876533

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.49  E-value=3.2e-14  Score=110.32  Aligned_cols=56  Identities=41%  Similarity=1.112  Sum_probs=50.0

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      ...+..|+||++.|.....++.|+|+|.||..||..|++.+.+||+||.++.....
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~   67 (78)
T 2ect_A           12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT   67 (78)
T ss_dssp             SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred             CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence            34568899999999988888999999999999999999999999999999877644

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.48  E-value=2e-14  Score=104.17  Aligned_cols=51  Identities=39%  Similarity=0.882  Sum_probs=46.6

Q ss_pred             cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      +.+..|+||++.|+.++.+..++ |+|.||..||.+|++.+.+||+||.+++
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence            34578999999999888899998 9999999999999999999999999875

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.48  E-value=3.3e-14  Score=107.76  Aligned_cols=54  Identities=28%  Similarity=0.876  Sum_probs=48.8

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ..+..|+||++.|..++.++.++|+|.||..||..|++.+.+||+||..+....
T Consensus        12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            345789999999988888999999999999999999999999999999987763

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=99.38  E-value=2.9e-13  Score=112.20  Aligned_cols=53  Identities=26%  Similarity=0.610  Sum_probs=43.4

Q ss_pred             CCCcccccCCccccCC---------------CeEEccccCccchhhHHHHH-----hcCCCCCccCccCCCCC
Q 017269          184 KESHCAVCKEPFQLNS---------------EAREMPCKHIYHGECILPWL-----SMRNSCPLCRRELPNEA  236 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~---------------~~~~lpC~H~FH~~CI~~WL-----~~~~sCPvCR~~l~~~~  236 (374)
                      .+..|+||++.|....               .++.++|+|.||..||..||     +.+.+||+||..+....
T Consensus        24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~~   96 (114)
T 1v87_A           24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKT   96 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCS
T ss_pred             CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCCC
Confidence            3568999999996543               34578899999999999999     45679999999887653

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=2.2e-13  Score=107.38  Aligned_cols=51  Identities=25%  Similarity=0.682  Sum_probs=42.4

Q ss_pred             CCcccccCCcccc-----------CCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQL-----------NSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~-----------~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||+++|+.           ++.++.++ |+|.||.+||.+||+.+++||+||+++...
T Consensus        15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~~   77 (81)
T 2ecl_A           15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVVQ   77 (81)
T ss_dssp             CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCEE
T ss_pred             CCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcchh
Confidence            4678888888753           44566776 999999999999999999999999988654

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.36  E-value=3.7e-13  Score=97.23  Aligned_cols=50  Identities=30%  Similarity=0.659  Sum_probs=43.7

Q ss_pred             CCCcccccCCccccC-CCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          184 KESHCAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       184 ~~~~C~ICle~f~~~-~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      .+..|+||++.|..+ +.++.++|+|.||..||..|++.+.+||+||.++.
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~   54 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS   54 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence            357899999998654 45788999999999999999998899999999875

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=99.34  E-value=6.1e-13  Score=110.66  Aligned_cols=51  Identities=31%  Similarity=0.619  Sum_probs=43.7

Q ss_pred             CCCcccccCCccccC---------------CCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLN---------------SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~---------------~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      .++.|+||++.|+..               ..+..++|+|.||..||.+||+.+.+||+||+++..
T Consensus        36 ~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~~  101 (106)
T 3dpl_R           36 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  101 (106)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCccee
Confidence            468899999998753               136778899999999999999999999999998643

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.33  E-value=7.9e-13  Score=99.36  Aligned_cols=52  Identities=21%  Similarity=0.634  Sum_probs=44.6

Q ss_pred             cCCCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          183 AKESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      ..+..|+||++.|...    ..++.++|+|.||..||..|++.+.+||+||.++..
T Consensus        13 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           13 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             TCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence            3467899999998753    345889999999999999999999999999998754

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.31  E-value=9.1e-13  Score=99.86  Aligned_cols=54  Identities=20%  Similarity=0.634  Sum_probs=46.2

Q ss_pred             cCCCcccccCCcccc----CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQL----NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~----~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ..+..|+||++.|..    +..++.++|+|.||..||.+|++.+.+||+||.++...+
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   65 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCCS
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChhh
Confidence            345789999999865    245588999999999999999999999999999987653

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.30  E-value=1.8e-12  Score=102.61  Aligned_cols=55  Identities=25%  Similarity=0.610  Sum_probs=45.8

Q ss_pred             CCCcccccCCccccCCCeEEcccc-----CccchhhHHHHHhcC--CCCCccCccCCCCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCK-----HIYHGECILPWLSMR--NSCPLCRRELPNEANDR  239 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~-----H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~~~~  239 (374)
                      .+..|.||+++|+.++.+ ++||+     |.||.+||.+||+.+  .+||+||+++..+....
T Consensus        14 ~~~~C~IC~~~~~~~~~l-~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~~~   75 (80)
T 2d8s_A           14 SQDICRICHCEGDDESPL-ITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIMETKLS   75 (80)
T ss_dssp             TSCCCSSSCCCCCSSSCE-ECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCCCCSC
T ss_pred             CCCCCeEcCccccCCCee-EeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecCcccC
Confidence            457899999999877665 69997     999999999999765  48999999998765443

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.28  E-value=9.7e-13  Score=100.50  Aligned_cols=51  Identities=27%  Similarity=0.687  Sum_probs=44.5

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      .+..|+||++.+.   +.+.++|+|.||..||..|++.+.+||+||..+.....
T Consensus        14 ~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~   64 (71)
T 2d8t_A           14 TVPECAICLQTCV---HPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPEDFL   64 (71)
T ss_dssp             SCCBCSSSSSBCS---SEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCHHHH
T ss_pred             CCCCCccCCcccC---CCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCHhhc
Confidence            4578999999875   56788999999999999999999999999999876543

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.28  E-value=1.5e-12  Score=96.34  Aligned_cols=51  Identities=22%  Similarity=0.642  Sum_probs=44.6

Q ss_pred             CCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.+...    ..+..++|+|.||..||..|++.+.+||+||.++...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   57 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK   57 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence            57899999998742    4557889999999999999999999999999998765

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.26  E-value=4.3e-12  Score=95.59  Aligned_cols=50  Identities=26%  Similarity=0.722  Sum_probs=43.7

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+..|+||++.+.  +.++.++|+|.||..||..|++.+.+||+||..+...
T Consensus         4 ~~~~C~IC~~~~~--~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~   53 (68)
T 1chc_A            4 VAERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCCeeCCcccc--CCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHhh
Confidence            3578999999976  3468899999999999999999999999999998654

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=4.7e-12  Score=96.90  Aligned_cols=53  Identities=23%  Similarity=0.489  Sum_probs=44.5

Q ss_pred             cCCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNEAND  238 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~~  238 (374)
                      ..+..|+||++.|..   .+.+ +|+|.||..||..|++.+..||+||..+...+..
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~~~   66 (72)
T 2djb_A           13 TPYILCSICKGYLID---ATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQPL   66 (72)
T ss_dssp             CGGGSCTTTSSCCSS---CEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSCSC
T ss_pred             CCCCCCCCCChHHHC---cCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccccc
Confidence            345789999998863   4555 8999999999999999999999999998776443

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.26  E-value=1.7e-12  Score=98.43  Aligned_cols=50  Identities=26%  Similarity=0.755  Sum_probs=44.0

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ..+..|+||++.+..    +.++|+|.||..||..|++.+.+||+||.++...+
T Consensus        13 ~~~~~C~IC~~~~~~----~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (70)
T 2ecn_A           13 TDEEECCICMDGRAD----LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGAN   62 (70)
T ss_dssp             CCCCCCSSSCCSCCS----EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCCC
T ss_pred             CCCCCCeeCCcCccC----cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCCC
Confidence            345789999999864    78999999999999999999999999999987653

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.21  E-value=1.2e-11  Score=97.35  Aligned_cols=54  Identities=20%  Similarity=0.527  Sum_probs=45.9

Q ss_pred             ccCCCcccccCCccccCCC-eEEccccCccchhhHHHHHhcC---CCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSMR---NSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~WL~~~---~sCPvCR~~l~~~  235 (374)
                      +..+..|+||++.|...+. .+.++|+|.||..||..|++.+   ..||+||..+...
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   69 (88)
T 2ct2_A           12 LREVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT   69 (88)
T ss_dssp             CCSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred             ccCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence            4456889999999986554 7889999999999999999875   6899999987654

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.19  E-value=1.7e-11  Score=94.53  Aligned_cols=51  Identities=29%  Similarity=0.656  Sum_probs=42.7

Q ss_pred             cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC--CCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR--NSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~  236 (374)
                      ..+..|+||++.|.   +.+.++ |+|.||..||..|++.+  .+||+||.++...+
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~~~   66 (74)
T 2yur_A           13 PDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVSPD   66 (74)
T ss_dssp             CGGGSCSSSCCCCT---TCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCCTT
T ss_pred             CCCCCCcCCChHHh---CCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCCcc
Confidence            34578999999886   567799 99999999999999865  68999999765543

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.18  E-value=1.6e-11  Score=95.99  Aligned_cols=54  Identities=19%  Similarity=0.480  Sum_probs=44.0

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC--CCCCccCccCCCCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR--NSCPLCRRELPNEANDR  239 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~--~sCPvCR~~l~~~~~~~  239 (374)
                      ....|+||++.+..++..  ..|+|.||.+||.+||+.+  .+||+||.+++.+..+.
T Consensus        14 ~i~~C~IC~~~i~~g~~C--~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~~~~~~   69 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSC--ETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPKS   69 (74)
T ss_dssp             SSCBCSSSCCBCSSSEEC--SSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCSCCCCC
T ss_pred             CCCcCcchhhHcccCCcc--CCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCCCCCCC
Confidence            347899999999865422  3699999999999999877  79999999998765443

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.17  E-value=2e-11  Score=93.04  Aligned_cols=50  Identities=24%  Similarity=0.561  Sum_probs=42.7

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHh---cCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS---MRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|.   +.+.++|+|.||..||..|++   .+..||+||.++..+
T Consensus        18 ~~~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~   70 (73)
T 2ysl_A           18 QEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN   70 (73)
T ss_dssp             CCCCBCTTTCSBCS---SEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred             ccCCEeccCCcccC---CeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence            44678999999886   577889999999999999997   455899999998765

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.16  E-value=1.9e-11  Score=95.49  Aligned_cols=48  Identities=21%  Similarity=0.597  Sum_probs=42.6

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      .....|+||++.|.   ..++++|+|.||..||..|++....||+||..+.
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~   60 (81)
T 2csy_A           13 EIPFRCFICRQAFQ---NPVVTKCRHYFCESCALEHFRATPRCYICDQPTG   60 (81)
T ss_dssp             CCCSBCSSSCSBCC---SEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred             CCCCCCcCCCchhc---CeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence            34578999999985   4678999999999999999999999999999986

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=99.15  E-value=3.6e-12  Score=107.91  Aligned_cols=51  Identities=31%  Similarity=0.619  Sum_probs=1.0

Q ss_pred             CCCcccccCCccccC-------------C--CeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLN-------------S--EAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~-------------~--~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      .++.|+||+++|+..             +  .+..++|+|.||.+||.+||+.+.+||+||.++..
T Consensus        47 ~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~~  112 (117)
T 4a0k_B           47 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF  112 (117)
T ss_dssp             CC----------------------------------------------------------------
T ss_pred             CCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeeee
Confidence            457899999999752             2  23335799999999999999999999999998654

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.14  E-value=2.1e-11  Score=91.56  Aligned_cols=50  Identities=18%  Similarity=0.554  Sum_probs=41.8

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.+.   +...++|+|.||..||..|++ .+..||+||.++..+
T Consensus        13 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   63 (66)
T 2ecy_A           13 EDKYKCEKCHLVLC---SPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD   63 (66)
T ss_dssp             CCCEECTTTCCEES---SCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred             CcCCCCCCCChHhc---CeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence            34578999999986   344589999999999999994 567899999998765

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.13  E-value=1.9e-11  Score=105.25  Aligned_cols=48  Identities=33%  Similarity=0.913  Sum_probs=43.0

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.|.   .++.+||+|.||..||..|+..+.+||+||.++...
T Consensus        53 ~~~C~iC~~~~~---~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFI---EAVTLNCAHSFCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCS---SEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccC---CceECCCCCCccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            467999999886   578899999999999999999999999999988654

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=99.12  E-value=4.7e-11  Score=92.29  Aligned_cols=51  Identities=18%  Similarity=0.428  Sum_probs=44.0

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~  235 (374)
                      +..+..|+||++.|.   +.+.++|+|.||..||..|++. +.+||+||.++...
T Consensus         5 ~~~~~~C~IC~~~~~---~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~~   56 (78)
T 1t1h_A            5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHA   56 (78)
T ss_dssp             CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSC
T ss_pred             CcccCCCCCcccccc---CCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCChh
Confidence            345688999999886   5678899999999999999986 77999999988655

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.09  E-value=9.8e-11  Score=90.98  Aligned_cols=50  Identities=28%  Similarity=0.678  Sum_probs=42.9

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc------CCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM------RNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|.   ..+.++|+|.||..||..|++.      ...||+||..+..+
T Consensus        17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~   72 (85)
T 2ecw_A           17 KEEVTCPICLELLK---EPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPFG   72 (85)
T ss_dssp             CTTTSCTTTCSCCS---SCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCTT
T ss_pred             ccCCCCcCCChhhC---cceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCHH
Confidence            44678999999886   4568999999999999999976      66899999998765

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.1e-10  Score=90.67  Aligned_cols=51  Identities=25%  Similarity=0.636  Sum_probs=43.3

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc------CCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM------RNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~------~~sCPvCR~~l~~~~  236 (374)
                      ..+..|+||++.|.   ..+.++|+|.||..||..|++.      ...||+||..+...+
T Consensus        17 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~~~   73 (85)
T 2ecv_A           17 KEEVTCPICLELLT---QPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQPEN   73 (85)
T ss_dssp             CCCCCCTTTCSCCS---SCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCSSS
T ss_pred             cCCCCCCCCCcccC---CceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCHHh
Confidence            34578999999886   4567899999999999999976      779999999987653

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=99.08  E-value=1.4e-11  Score=100.45  Aligned_cols=49  Identities=31%  Similarity=0.699  Sum_probs=42.6

Q ss_pred             CCCcccccCCccccCCCeEE-ccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMR-NSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~  235 (374)
                      .+..|+||++.|.   ..+. ++|+|.||..||..|++.+ .+||+||..+...
T Consensus        21 ~~~~C~IC~~~~~---~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   71 (100)
T 3lrq_A           21 EVFRCFICMEKLR---DARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQLR   71 (100)
T ss_dssp             HHTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCGG
T ss_pred             CCCCCccCCcccc---CccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCHH
Confidence            4578999999986   4666 8999999999999999877 6999999998654

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=99.06  E-value=4.1e-11  Score=92.49  Aligned_cols=51  Identities=29%  Similarity=0.593  Sum_probs=43.0

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc-------CCCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-------RNSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-------~~sCPvCR~~l~~~  235 (374)
                      +..+..|+||++.|.   +.+.++|+|.||..||..|++.       ...||+||..+...
T Consensus         9 ~~~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~~   66 (79)
T 2egp_A            9 VQEEVTCPICLELLT---EPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSFE   66 (79)
T ss_dssp             CCCCCEETTTTEECS---SCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCSS
T ss_pred             cccCCCCcCCCcccC---CeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCHh
Confidence            344688999999886   4566899999999999999976       56899999998764

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=99.05  E-value=7.3e-11  Score=97.08  Aligned_cols=52  Identities=23%  Similarity=0.662  Sum_probs=44.3

Q ss_pred             cccCCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          181 HVAKESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       181 ~~~~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+..+..|+||++.|.   +.+.+ +|+|.||..||..|++.+.+||+||..+...
T Consensus        11 ~~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (108)
T 2ckl_A           11 ELNPHLMCVLCGGYFI---DATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHKT   63 (108)
T ss_dssp             HHGGGTBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCSS
T ss_pred             ccCCcCCCccCChHHh---CcCEeCCCCChhhHHHHHHHHHhCCcCcCCCcccccc
Confidence            3445688999999986   45565 9999999999999999999999999988764

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.05  E-value=1.2e-10  Score=86.43  Aligned_cols=44  Identities=27%  Similarity=0.611  Sum_probs=37.5

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHh---cCCCCCcc
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS---MRNSCPLC  228 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~---~~~sCPvC  228 (374)
                      +..+..|+||++.|.   +.+.++|+|.||..||..|++   ....||+|
T Consensus        17 ~~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           17 LQEEVICPICLDILQ---KPVTIDCGHNFCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCBCTTTCSBCS---SCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred             CccCCCCCcCCchhC---CeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence            345688999999887   567889999999999999997   45589998

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=99.05  E-value=7.4e-11  Score=98.86  Aligned_cols=53  Identities=21%  Similarity=0.619  Sum_probs=45.8

Q ss_pred             CCCcccccCCccccC----CCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          184 KESHCAVCKEPFQLN----SEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       184 ~~~~C~ICle~f~~~----~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ++..|+||++.|...    ..++.++|+|.||..||..||+.+.+||+||..+....
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   62 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHKR   62 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTTC
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCcccc
Confidence            457899999998743    45588999999999999999999999999999987654

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=99.01  E-value=8e-11  Score=95.27  Aligned_cols=48  Identities=31%  Similarity=0.672  Sum_probs=41.9

Q ss_pred             CCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.|.   +.+.+ +|+|.||..||..|+..+.+||+||..+...
T Consensus        22 ~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~   70 (99)
T 2y43_A           22 LLRCGICFEYFN---IAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTEP   70 (99)
T ss_dssp             HTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGG
T ss_pred             CCCcccCChhhC---CcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCChh
Confidence            478999999986   45566 8999999999999999889999999988653

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.99  E-value=1.6e-10  Score=96.87  Aligned_cols=52  Identities=21%  Similarity=0.655  Sum_probs=45.1

Q ss_pred             CCCcccccCCcccc----CCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQL----NSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~----~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ....|+||++.|..    +...+.++|+|.||..||.+||+.+++||+||..+..+
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~  126 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK  126 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence            45789999999874    23457889999999999999999999999999998765

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.99  E-value=1.6e-10  Score=83.89  Aligned_cols=43  Identities=30%  Similarity=0.758  Sum_probs=36.0

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHH---hcCCCCCcc
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWL---SMRNSCPLC  228 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL---~~~~sCPvC  228 (374)
                      ..+..|+||++.+..   .+.++|+|.||..||..|+   +.+.+||+|
T Consensus        13 ~~~~~C~IC~~~~~~---p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           13 QVEASCSVCLEYLKE---PVIIECGHNFCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             CCCCBCSSSCCBCSS---CCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred             ccCCCCccCCcccCc---cEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence            345789999999863   4668999999999999995   456789998

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.99  E-value=2.2e-10  Score=91.21  Aligned_cols=49  Identities=31%  Similarity=0.703  Sum_probs=41.6

Q ss_pred             ccCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC--CCCCccCccCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR--NSCPLCRRELP  233 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~--~sCPvCR~~l~  233 (374)
                      +..+..|+||++.|.   +.+.++ |+|.||..||..|+..+  ..||+||..+.
T Consensus        10 ~~~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A           10 IPDELLCLICKDIMT---DAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCTTTEETTTTEECS---SCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             CCcCCCCCCCChhhc---CceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            345688999999886   567899 99999999999999644  58999999874

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.98  E-value=3.9e-10  Score=94.95  Aligned_cols=48  Identities=25%  Similarity=0.553  Sum_probs=41.9

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~  234 (374)
                      .+..|+||++.|.   ..+.++|+|.||..||..|+..+. +||+||..+..
T Consensus        51 ~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVF---RPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHc---CcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            3578999999887   677889999999999999998554 89999999866

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.96  E-value=4.2e-10  Score=84.16  Aligned_cols=51  Identities=22%  Similarity=0.460  Sum_probs=40.9

Q ss_pred             CCcccccCC-ccccCCC-eEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269          185 ESHCAVCKE-PFQLNSE-AREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle-~f~~~~~-~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~  235 (374)
                      +..|+||++ .|..... ...++|+|.||..||..|+.. ...||+||..+...
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   56 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence            568999999 6664432 356899999999999999764 46899999998665

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.95  E-value=2.2e-10  Score=101.03  Aligned_cols=49  Identities=27%  Similarity=0.733  Sum_probs=41.2

Q ss_pred             CCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSM-RNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~  235 (374)
                      .+..|+||++.|.   ..+.+ +|+|.||..||..|++. +..||+||..+...
T Consensus        53 ~~~~C~IC~~~~~---~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  103 (165)
T 2ckl_B           53 SELMCPICLDMLK---NTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVSK  103 (165)
T ss_dssp             HHHBCTTTSSBCS---SEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCSG
T ss_pred             CCCCCcccChHhh---CcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCCc
Confidence            4578999999987   34555 99999999999999986 77899999998643

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.94  E-value=1.7e-10  Score=101.05  Aligned_cols=49  Identities=24%  Similarity=0.573  Sum_probs=42.7

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~  235 (374)
                      .+..|+||++.|.   ..++++|+|.||..||..|+.... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVY---QPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCS---SEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhc---CCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            3578999999886   567899999999999999998665 899999998766

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.92  E-value=5.6e-10  Score=91.61  Aligned_cols=49  Identities=29%  Similarity=0.783  Sum_probs=41.3

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC---CCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN---SCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~---sCPvCR~~l~~~~  236 (374)
                      ...|+||++.|.   ..+.++|+|.||..||..|+..+.   .||+||..+....
T Consensus        21 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (112)
T 1jm7_A           21 ILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (112)
T ss_dssp             HTSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             CCCCcccChhhc---CeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCHhh
Confidence            367999999886   455689999999999999998654   8999999887653

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.88  E-value=6.7e-10  Score=92.88  Aligned_cols=50  Identities=24%  Similarity=0.590  Sum_probs=42.8

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|.   ..+.++|+|.||..||..|++... +||+||..+...
T Consensus        16 ~~~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (118)
T 3hct_A           16 ESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (118)
T ss_dssp             CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCcCChhhc---CeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCHH
Confidence            34578999999886   567889999999999999998665 999999988664

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.86  E-value=2.7e-10  Score=94.53  Aligned_cols=47  Identities=30%  Similarity=0.776  Sum_probs=41.2

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~  234 (374)
                      +..|+||++.|.   +.+.++|+|.||..||..|+.. +..||+||..+..
T Consensus        15 ~~~C~iC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           15 ECQCGICMEILV---EPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHBCTTTCSBCS---SCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCccCCcccC---ceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            478999999886   5778899999999999999976 6689999999864

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.85  E-value=1.5e-09  Score=108.70  Aligned_cols=48  Identities=27%  Similarity=0.765  Sum_probs=42.6

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      ...|+||++.+.   .++.+||+|.||..||..|+. .+.+||+||.++...
T Consensus       332 ~~~C~ICle~~~---~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~~  380 (389)
T 2y1n_A          332 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGT  380 (389)
T ss_dssp             SSBCTTTSSSBC---CEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCEE
T ss_pred             CCCCCccCcCCC---CeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCCc
Confidence            468999999875   678899999999999999998 788999999988665

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.84  E-value=1.8e-09  Score=85.79  Aligned_cols=50  Identities=16%  Similarity=0.216  Sum_probs=44.7

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|+   +.++++|+|.|+..||..||..+.+||+|+..+...
T Consensus        12 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   61 (85)
T 2kr4_A           12 PDEFRDPLMDTLMT---DPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTES   61 (85)
T ss_dssp             CTTTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             chheECcccCchhc---CCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCChH
Confidence            34688999999887   788999999999999999999889999999988655

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.82  E-value=2.1e-09  Score=89.32  Aligned_cols=49  Identities=29%  Similarity=0.670  Sum_probs=42.6

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~  236 (374)
                      +..|+||++.|.   +.+.++|+|.||..||..|++. ..+||+||..+...+
T Consensus        23 ~~~C~IC~~~~~---~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~~   72 (116)
T 1rmd_A           23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTD   72 (116)
T ss_dssp             HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             CCCCCCCCcHhc---CcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCHhh
Confidence            478999999886   5677999999999999999986 679999999987654

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.82  E-value=3e-09  Score=86.91  Aligned_cols=50  Identities=14%  Similarity=0.121  Sum_probs=44.7

Q ss_pred             cCCCcccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|+   +.++++|+ |.|+..||..||..+.+||+|+.++...
T Consensus        20 p~~~~CpI~~~~m~---dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~~   70 (98)
T 1wgm_A           20 CDEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMD   70 (98)
T ss_dssp             CTTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTT
T ss_pred             cHhcCCcCcccccc---CCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCChh
Confidence            34688999999887   78899999 9999999999999888999999998765

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.81  E-value=2.7e-09  Score=87.50  Aligned_cols=50  Identities=18%  Similarity=0.235  Sum_probs=44.7

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ..+..|+||++.|+   +.++++|+|.|+..||..||..+.+||+|+.++...
T Consensus        27 p~~~~CpI~~~~m~---dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~~   76 (100)
T 2kre_A           27 PDEFRDPLMDTLMT---DPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTES   76 (100)
T ss_dssp             STTTBCTTTCSBCS---SEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCTT
T ss_pred             cHhhCCcCccCccc---CCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCChh
Confidence            34688999999887   788999999999999999999888999999988764

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.79  E-value=1.5e-09  Score=79.47  Aligned_cols=46  Identities=22%  Similarity=0.585  Sum_probs=39.0

Q ss_pred             CCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+..|+||++.|.   +.+.|+|+|.||..||..|   ...||+||..+...
T Consensus         5 ~~~~C~IC~~~~~---~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~   50 (56)
T 1bor_A            5 QFLRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLG   50 (56)
T ss_dssp             CCSSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCC
T ss_pred             cCCCceEeCCccC---CeEEcCCCCcccHHHHccC---CCCCCcCCcEeecC
Confidence            4578999999987   4578999999999999884   66899999988665

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.78  E-value=1.1e-09  Score=95.14  Aligned_cols=51  Identities=24%  Similarity=0.514  Sum_probs=42.9

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcCC-CCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~-sCPvCR~~l~~~  235 (374)
                      +..+..|+||++.|.   +.+.++|+|.||..||..|++... +||+||.++...
T Consensus        28 l~~~~~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~~   79 (141)
T 3knv_A           28 LEAKYLCSACRNVLR---RPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIYE   79 (141)
T ss_dssp             CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCCC
T ss_pred             CCcCcCCCCCChhhc---CcEECCCCCccCHHHHHHHHhcCCCCCCCCCCccccc
Confidence            445688999999886   557789999999999999998665 899999987544

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=98.76  E-value=4.1e-09  Score=79.35  Aligned_cols=47  Identities=17%  Similarity=0.437  Sum_probs=39.7

Q ss_pred             CCCcccccCCccccCCCeEEc--cccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269          184 KESHCAVCKEPFQLNSEAREM--PCKHI-YHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      .+..|.||++.+.   +...+  ||+|. |+..|+..|++.+..||+||.++.
T Consensus         7 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   56 (64)
T 2vje_A            7 AIEPCVICQGRPK---NGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ   56 (64)
T ss_dssp             GGSCCTTTSSSCS---CEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred             CcCCCCcCCCCCC---CEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence            3578999998765   44555  99999 899999999998899999999874

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.74  E-value=1.1e-08  Score=80.30  Aligned_cols=55  Identities=22%  Similarity=0.573  Sum_probs=42.5

Q ss_pred             ccCCCcccccCCccccCCCeEEcc--ccCccchhhHHHHHh-cCCCCCccCccCCCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMP--CKHIYHGECILPWLS-MRNSCPLCRRELPNEAN  237 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lp--C~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~~~  237 (374)
                      +.++..|+||++.+...+ .+.+|  |+|.||..||..|++ ....||+||..+.....
T Consensus         8 ~~~~~~CpICle~~~~~d-~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~~~   65 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDD-INFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPEDPA   65 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTT-TTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSCSS
T ss_pred             cccCCcCCccCccCcccc-ccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCCch
Confidence            345678999999886433 33444  999999999999985 45689999999876643

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.71  E-value=4.4e-09  Score=87.75  Aligned_cols=46  Identities=22%  Similarity=0.617  Sum_probs=39.8

Q ss_pred             CCcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.|.   ..+.+ +|+|.||..||..|+.  ..||+||..+...
T Consensus        22 ~~~C~IC~~~~~---~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (117)
T 1jm7_B           22 LLRCSRCTNILR---EPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (117)
T ss_dssp             TTSCSSSCSCCS---SCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             CCCCCCCChHhh---CccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCccc
Confidence            578999999886   45677 8999999999999998  7899999988543

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=98.69  E-value=8.2e-09  Score=77.42  Aligned_cols=47  Identities=19%  Similarity=0.504  Sum_probs=39.3

Q ss_pred             CCCcccccCCccccCCCeEEc--cccCc-cchhhHHHHHhcCCCCCccCccCC
Q 017269          184 KESHCAVCKEPFQLNSEAREM--PCKHI-YHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~l--pC~H~-FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      .+..|.||++...   +...+  ||+|. |+..|+..|.+....||+||.++.
T Consensus         6 ~~~~C~IC~~~~~---~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~   55 (63)
T 2vje_B            6 LLKPCSLCEKRPR---DGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ   55 (63)
T ss_dssp             GGSBCTTTSSSBS---CEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred             cCCCCcccCCcCC---CeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence            3578999998754   34445  99998 999999999988889999999874

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=98.69  E-value=1.9e-09  Score=83.25  Aligned_cols=44  Identities=23%  Similarity=0.610  Sum_probs=38.1

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.+.   .++.+||+|. ||..|+..|    ..||+||..+...
T Consensus        24 ~~~C~iC~~~~~---~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   68 (74)
T 4ic3_A           24 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFK   68 (74)
T ss_dssp             HTBCTTTSSSBC---CEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEE
T ss_pred             CCCCCCCCCCCC---CEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCc
Confidence            468999998765   6788999999 999999998    8899999987543

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.60  E-value=1.9e-08  Score=94.09  Aligned_cols=50  Identities=20%  Similarity=0.151  Sum_probs=42.9

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE  235 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~  235 (374)
                      .....|+||++.|.   +++++||+|.||..||..||..+ .+||+||.++...
T Consensus       206 ~~~~~c~i~~~~~~---dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~~  256 (281)
T 2c2l_A          206 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQE  256 (281)
T ss_dssp             CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGG
T ss_pred             CcccCCcCcCCHhc---CCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCchh
Confidence            34688999999887   78899999999999999999764 4699999998654

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.56  E-value=2.5e-08  Score=80.41  Aligned_cols=49  Identities=22%  Similarity=0.575  Sum_probs=40.8

Q ss_pred             CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC------CCCCc--cCcc-CCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR------NSCPL--CRRE-LPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~------~sCPv--CR~~-l~~~  235 (374)
                      .+..|+||++.|+   +.++++ |+|.|+..||..||..+      .+||+  |+.. +...
T Consensus         6 ~~~~CPI~~~~~~---dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~~~   64 (94)
T 2yu4_A            6 SGFTCPITKEEMK---KPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIRKS   64 (94)
T ss_dssp             SCCBCTTTCSBCS---SEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBCGG
T ss_pred             cEeECcCcCchhc---CCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccCHh
Confidence            4578999999887   678886 99999999999999754      48999  9876 5544

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.54  E-value=2.7e-08  Score=87.87  Aligned_cols=51  Identities=24%  Similarity=0.595  Sum_probs=42.9

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNE  235 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~  235 (374)
                      +..+..|+||++.|.   ..+.++|+|.||..||..|++.. .+||+||..+...
T Consensus        15 ~~~~~~C~IC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~   66 (170)
T 3hcs_A           15 LESKYECPICLMALR---EAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLEN   66 (170)
T ss_dssp             CCGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred             CCCCCCCCCCChhhc---CcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcchh
Confidence            344678999999886   56778999999999999999754 4999999988664

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=98.52  E-value=5.4e-08  Score=72.72  Aligned_cols=48  Identities=23%  Similarity=0.606  Sum_probs=37.4

Q ss_pred             CCCcccccCCccccCCCeEEcccc--C---ccchhhHHHHHh--cCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCK--H---IYHGECILPWLS--MRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~--H---~FH~~CI~~WL~--~~~sCPvCR~~l~~  234 (374)
                      ....|.||+++.  ++.. ++||.  +   .||..||.+||.  .+.+||+|++++..
T Consensus         5 ~~~~CrIC~~~~--~~~l-~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~   59 (60)
T 1vyx_A            5 DVPVCWICNEEL--GNER-FRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEEC--SCCC-CCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCEeEEeecCC--CCce-ecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence            457899999873  3333 68954  5   999999999996  36789999998753

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=98.42  E-value=4.9e-08  Score=96.13  Aligned_cols=52  Identities=23%  Similarity=0.601  Sum_probs=39.8

Q ss_pred             CCCcccccCCccccCCCe-----EEccccCccchhhHHHHHhcC-----------CCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEA-----REMPCKHIYHGECILPWLSMR-----------NSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~-----~~lpC~H~FH~~CI~~WL~~~-----------~sCPvCR~~l~~~  235 (374)
                      ...+|+||++.+..+..+     ...+|+|.||..||.+||+..           .+||.||++|...
T Consensus       307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~s  374 (381)
T 3k1l_B          307 EELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLSTS  374 (381)
T ss_dssp             SCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEGG
T ss_pred             CCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCcc
Confidence            347899999998763222     123599999999999999642           4699999988754

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.41  E-value=2.1e-07  Score=70.83  Aligned_cols=45  Identities=24%  Similarity=0.675  Sum_probs=37.8

Q ss_pred             CCCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+..|.||++...   .++.+||+|. |+..|+..    ...||+||..+...
T Consensus        14 ~~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~~   59 (68)
T 2ea5_A           14 NSKDCVVCQNGTV---NWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQES   59 (68)
T ss_dssp             CSSCCSSSSSSCC---CCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCCE
T ss_pred             CCCCCCCcCcCCC---CEEEECCCChhhhHHHHhc----CCCCCCCCcchhce
Confidence            3578999988754   6889999999 99999984    57999999988654

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.39  E-value=1.1e-07  Score=73.26  Aligned_cols=44  Identities=23%  Similarity=0.614  Sum_probs=36.3

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.+.   .++.+||+|. ||..|+..    ...||+||.++...
T Consensus        25 ~~~C~IC~~~~~---~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~~   69 (75)
T 2ecg_A           25 EKLCKICMDRNI---AIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITFK   69 (75)
T ss_dssp             HHSCSSSCSSCC---CBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCCC
T ss_pred             CCCCCcCCCCCC---CEEEecCCCHHHHHHHhhC----CCCCccCCceecCc
Confidence            357999998865   5678999999 99999964    47899999988653

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.39  E-value=1.5e-07  Score=85.08  Aligned_cols=51  Identities=18%  Similarity=0.132  Sum_probs=43.3

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~~  236 (374)
                      .....|+||++.|.   +++++||+|.|+..||..||..+ .+||+|+.++....
T Consensus       104 p~~f~CPI~~elm~---DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~~~  155 (179)
T 2f42_A          104 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQDQ  155 (179)
T ss_dssp             CGGGBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGG
T ss_pred             cHhhcccCccccCC---CCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCChhh
Confidence            34588999999887   68899999999999999999764 47999999886653

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=98.25  E-value=2.5e-07  Score=72.44  Aligned_cols=44  Identities=30%  Similarity=0.639  Sum_probs=37.3

Q ss_pred             CCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      +..|.||++.+.   .++.+||+|. |+..|+..|    ..||+||..+...
T Consensus        18 ~~~C~IC~~~~~---~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~   62 (79)
T 2yho_A           18 AMLCMVCCEEEI---NSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEHV   62 (79)
T ss_dssp             HTBCTTTSSSBC---CEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCEE
T ss_pred             CCEeEEeCcccC---cEEEECCCCHHHHHHHHHhc----CcCCCCCchhhCe
Confidence            367999988765   6788999999 999999887    4999999988654

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.23  E-value=3.9e-07  Score=72.94  Aligned_cols=47  Identities=21%  Similarity=0.639  Sum_probs=37.3

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc--------CCCCCc--cCcc
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM--------RNSCPL--CRRE  231 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~--------~~sCPv--CR~~  231 (374)
                      ...|+||++++...+.....+|+|.||..||..+++.        .-.||.  |+..
T Consensus         5 ~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            4679999999875444444579999999999999953        137999  9987

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=98.23  E-value=4.4e-07  Score=67.82  Aligned_cols=49  Identities=12%  Similarity=0.182  Sum_probs=43.0

Q ss_pred             CcccccCCccccCCCeEEc-cccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      ..|+||++.|+   +.+.+ +|+|.|...||.+||+.+.+||+++.+|..++.
T Consensus         4 ~~CpIs~~~m~---dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~~L   53 (61)
T 2bay_A            4 MLCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   53 (61)
T ss_dssp             CCCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             EEecCCCCCCC---CCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChhhc
Confidence            57999999887   56777 899999999999999988899999999877644

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.13  E-value=5.9e-07  Score=88.74  Aligned_cols=44  Identities=30%  Similarity=0.720  Sum_probs=38.5

Q ss_pred             CCCcccccCCccccCCCeEEccccCc-cchhhHHHHHhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCKHI-YHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~H~-FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      .+..|+||++.+.   .++.+||+|. ||..||..|    ..||+||..+..
T Consensus       294 ~~~~C~IC~~~~~---~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~  338 (345)
T 3t6p_A          294 EERTCKVCMDKEV---SVVFIPCGHLVVCQECAPSL----RKCPICRGIIKG  338 (345)
T ss_dssp             TTCBCTTTSSSBC---CEEEETTCCEEECTTTGGGC----SBCTTTCCBCCE
T ss_pred             CCCCCCccCCcCC---ceEEcCCCChhHhHHHHhcC----CcCCCCCCCccC
Confidence            4678999999875   6788999999 999999988    789999998754

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=98.01  E-value=2.1e-06  Score=81.69  Aligned_cols=50  Identities=20%  Similarity=0.533  Sum_probs=40.9

Q ss_pred             CCCcccccCCccccCCCeEE-ccccCccchhhHHHHHhcC--CCCCc--cCccCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEARE-MPCKHIYHGECILPWLSMR--NSCPL--CRRELPNEA  236 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~-lpC~H~FH~~CI~~WL~~~--~sCPv--CR~~l~~~~  236 (374)
                      .+..|+||++.|.   ++++ +.|+|.|+..||..|++.+  .+||+  |+..+...+
T Consensus       180 ~el~CPIcl~~f~---DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~~d  234 (267)
T 3htk_C          180 IELTCPITCKPYE---APLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSMRD  234 (267)
T ss_dssp             CCSBCTTTSSBCS---SEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECGGG
T ss_pred             eeeECcCccCccc---CCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCchhh
Confidence            4578999999986   4555 5899999999999999764  47999  999876553

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=97.81  E-value=8.5e-06  Score=76.50  Aligned_cols=51  Identities=20%  Similarity=0.525  Sum_probs=41.5

Q ss_pred             CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCC--CCCccCccCCCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRN--SCPLCRRELPNEAND  238 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~--sCPvCR~~l~~~~~~  238 (374)
                      -..|.||.+....+   ...+ |+|.||..|+..|++.+.  .||.|+..|+...+.
T Consensus       180 i~~C~iC~~iv~~g---~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~~~~  233 (238)
T 3nw0_A          180 VKICNICHSLLIQG---QSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPHEIPK  233 (238)
T ss_dssp             CCBCTTTCSBCSSC---EECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCSCCCC
T ss_pred             CCcCcchhhHHhCC---cccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCCCCCC
Confidence            47899999987754   3343 999999999999997654  899999999887543

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.71  E-value=1.8e-05  Score=64.79  Aligned_cols=47  Identities=26%  Similarity=0.644  Sum_probs=38.5

Q ss_pred             cccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCC
Q 017269          187 HCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNE  235 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~  235 (374)
                      .|.+|--.+.  ...+.+||+|.||.+|+..|.+ ..++||.|+.++...
T Consensus         3 fC~~C~~Pi~--iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~rV   50 (101)
T 3vk6_A            3 FCDKCGLPIK--VYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQRI   50 (101)
T ss_dssp             BCTTTCSBCS--EEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSEE
T ss_pred             ecCccCCCeE--EEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeeee
Confidence            4788865554  4778999999999999999985 567999999988654

>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}

Probab=93.43  E-value=0.068  Score=40.25  Aligned_cols=44  Identities=23%  Similarity=0.598  Sum_probs=32.0

Q ss_pred             CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC----CCCCccCcc
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR----NSCPLCRRE  231 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~----~sCPvCR~~  231 (374)
                      .+..|.||.+.   + ++..-. |...||..|+.+.|...    -.||.|...
T Consensus        11 ~~~~C~vC~~~---~-~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~   59 (66)
T 2lri_C           11 PGARCGVCGDG---T-DVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGD   59 (66)
T ss_dssp             TTCCCTTTSCC---T-TCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTC
T ss_pred             CCCCcCCCCCC---C-eEEECCCCCCceecccCCCccCcCCCCCEECccccCC
Confidence            34679999753   3 333333 99999999999988543    379999764

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=91.43  E-value=0.1  Score=41.41  Aligned_cols=33  Identities=18%  Similarity=0.488  Sum_probs=24.9

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHH
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILP  217 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~  217 (374)
                      +..|.||++.+.......-+.|+|.|+..||..
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~   35 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKA   35 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChHHhHHHCHH
Confidence            467999998653322233388999999999998

>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3

Probab=90.33  E-value=0.19  Score=39.83  Aligned_cols=32  Identities=22%  Similarity=0.763  Sum_probs=23.5

Q ss_pred             cCCCcccccCCccccCCCeEEcc---ccCccchhhHHHH
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP---CKHIYHGECILPW  218 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp---C~H~FH~~CI~~W  218 (374)
                      ..|..|.||.- |..+   ..+|   |+-.||..|+.+-
T Consensus        13 ~~D~~C~VC~~-~t~~---~l~pCRvC~RvfH~~CL~r~   47 (89)
T 1wil_A           13 VNDEMCDVCEV-WTAE---SLFPCRVCTRVFHDGCLRRM   47 (89)
T ss_dssp             CCSCCCTTTCC-CCSS---CCSSCSSSSSCCCHHHHHHH
T ss_pred             CCCcccCcccc-cccc---ceeccccccccccHhhcccc
Confidence            35788999943 4432   2455   8999999999996

>2kdx_A HYPA, hydrogenase/urease nickel incorporation protein HYPA; metallochaperone, metal-binding, metal- binding protein; NMR {Helicobacter pylori}

Probab=88.43  E-value=0.31  Score=40.35  Aligned_cols=34  Identities=18%  Similarity=0.471  Sum_probs=26.7

Q ss_pred             CCceeecccCcceeeccCCCCCc-cCCCCCCCceEEec
Q 017269            5 GLSYWCYRCNRIIRIQSRTEDAI-VCPDCHTGFIEQIE   41 (374)
Q Consensus         5 ~~~YWCh~C~r~V~~~~~~~~~~-~CP~C~~gFvEEi~   41 (374)
                      ...|||..|...+...   .... .||.|++..++-+.
T Consensus        71 p~~~~C~~CG~~~e~~---~~~~~~CP~Cgs~~~~i~~  105 (119)
T 2kdx_A           71 KVELECKDCSHVFKPN---ALDYGVCEKCHSKNVIITQ  105 (119)
T ss_dssp             CCEEECSSSSCEECSC---CSTTCCCSSSSSCCCEEEE
T ss_pred             cceEEcCCCCCEEeCC---CCCCCcCccccCCCcEEec
Confidence            4589999999988763   3346 89999999877554

>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}

Probab=88.18  E-value=0.27  Score=36.10  Aligned_cols=44  Identities=30%  Similarity=0.675  Sum_probs=31.2

Q ss_pred             cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh----cCCCCCccCc
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS----MRNSCPLCRR  230 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~----~~~sCPvCR~  230 (374)
                      ..+..|.||.+.    .++.... |...||..|+.+-|.    ..-.||.|..
T Consensus         9 ~~~~~C~vC~~~----g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~   57 (61)
T 2l5u_A            9 DHQDYCEVCQQG----GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEK   57 (61)
T ss_dssp             CCCSSCTTTSCC----SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGG
T ss_pred             CCCCCCccCCCC----CcEEECCCCChhhhhhccCCCCCCCCCCceECccccc
Confidence            346789999763    2343333 899999999998663    2337999965

>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2

Probab=87.03  E-value=0.17  Score=37.21  Aligned_cols=48  Identities=21%  Similarity=0.572  Sum_probs=33.4

Q ss_pred             CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCcc
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRRE  231 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~~  231 (374)
                      ++..|+||...+..+...+..- |...||..|+.--..     ..-.||.|+.+
T Consensus         5 e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k   58 (64)
T 1we9_A            5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK   58 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred             CCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence            3567999998875444444444 999999999865432     23479999653

>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A

Probab=84.09  E-value=0.37  Score=35.38  Aligned_cols=45  Identities=31%  Similarity=0.589  Sum_probs=30.8

Q ss_pred             CCCcccccCCccccCCCeEEc-cccCccchhhHHHHHhc----CCCCCccCccC
Q 017269          184 KESHCAVCKEPFQLNSEAREM-PCKHIYHGECILPWLSM----RNSCPLCRREL  232 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~l-pC~H~FH~~CI~~WL~~----~~sCPvCR~~l  232 (374)
                      .+..|.||.+.   + .+... .|...||..|+.+-|..    .-.||.|....
T Consensus         8 ~~~~C~vC~~~---g-~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~   57 (61)
T 1mm2_A            8 HMEFCRVCKDG---G-ELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA   57 (61)
T ss_dssp             SCSSCTTTCCC---S-SCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred             CCCcCCCCCCC---C-CEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence            45789999753   2 22222 28999999999976643    23699997653

>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A

Probab=84.07  E-value=0.59  Score=41.92  Aligned_cols=47  Identities=19%  Similarity=0.462  Sum_probs=34.0

Q ss_pred             CcccccCCccccCCC---eEEcc-ccCccchhhHHHH------Hh-----cCCCCCccCccC
Q 017269          186 SHCAVCKEPFQLNSE---AREMP-CKHIYHGECILPW------LS-----MRNSCPLCRREL  232 (374)
Q Consensus       186 ~~C~ICle~f~~~~~---~~~lp-C~H~FH~~CI~~W------L~-----~~~sCPvCR~~l  232 (374)
                      ..|+||...|..++.   .+... |...||..|+.--      +.     ..-.||.|+..-
T Consensus         3 ~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~   64 (183)
T 3lqh_A            3 NFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH   64 (183)
T ss_dssp             CBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred             CcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence            569999999887653   44544 9999999998531      11     156899998753

>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*

Probab=84.00  E-value=0.4  Score=36.30  Aligned_cols=49  Identities=24%  Similarity=0.495  Sum_probs=33.7

Q ss_pred             CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh----cCCCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS----MRNSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~----~~~sCPvCR~~l~~  234 (374)
                      ...|.||..... ++..+..- |...||..|+..-+.    ..-.||.|+..+..
T Consensus        18 ~~~C~~C~~~~~-~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~k   71 (75)
T 2k16_A           18 IWICPGCNKPDD-GSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIKK   71 (75)
T ss_dssp             EECBTTTTBCCS-SCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHCS
T ss_pred             CcCCCCCCCCCC-CCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchhh
Confidence            466999977642 33343433 999999999986653    23479999876644

>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A

Probab=80.81  E-value=1  Score=49.81  Aligned_cols=50  Identities=16%  Similarity=0.096  Sum_probs=43.4

Q ss_pred             CCCcccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ++..|+|-++.|.   +++++|.+ +.|-..+|..||..+.+||+=|.+|...+
T Consensus       890 ~~F~cPIs~~lM~---DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~~~  940 (968)
T 3m62_A          890 DEFLDPLMYTIMK---DPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKLED  940 (968)
T ss_dssp             GGGBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCGGG
T ss_pred             HHhCCcchhhHHh---CCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCccc
Confidence            4578999988776   88899987 68999999999998999999999987653

>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A

Probab=80.50  E-value=0.67  Score=40.94  Aligned_cols=45  Identities=29%  Similarity=0.638  Sum_probs=32.2

Q ss_pred             CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccC
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRREL  232 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l  232 (374)
                      .+..|.||.+.   |+ +.... |...||..|+.+-|..    .-.||.|+...
T Consensus         3 ~~~~C~~C~~~---g~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~   52 (184)
T 3o36_A            3 NEDWCAVCQNG---GE-LLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS   52 (184)
T ss_dssp             SCSSCTTTCCC---SS-CEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred             CCCccccCCCC---Ce-eeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence            35779999753   33 33333 9999999999887753    34799998754

>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=80.19  E-value=1.2  Score=35.30  Aligned_cols=46  Identities=30%  Similarity=0.657  Sum_probs=32.5

Q ss_pred             cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCccC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRREL  232 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~~l  232 (374)
                      ..+..|.||.+.   + ++.... |.-.||..|+.+=|..    .-.||.|...-
T Consensus        23 ~n~~~C~vC~~~---g-~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~~   73 (88)
T 1fp0_A           23 DSATICRVCQKP---G-DLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLP   73 (88)
T ss_dssp             SSSSCCSSSCSS---S-CCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCC
T ss_pred             CCCCcCcCcCCC---C-CEEECCCCCCceecccCCCCCCCCcCCCcCCccccCCC
Confidence            346789999764   3 333333 8899999999887743    33799997653

>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2

Probab=80.16  E-value=0.88  Score=31.75  Aligned_cols=43  Identities=26%  Similarity=0.576  Sum_probs=28.4

Q ss_pred             cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269          187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR  230 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~  230 (374)
                      .|.||.+.-.. +.+..-. |...||..|+.+=|..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~   49 (51)
T 1f62_A            2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCCCCCCCCCC-CCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence            58899765322 2333333 9999999999765532    236999964

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	1e-16
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	6e-14
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	4e-13
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	1e-11
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	2e-10
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	4e-10
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	9e-10
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	2e-08
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	3e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	5e-07
d1v87a_	114	g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mou	2e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-06
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	5e-06
d1wima_	94	g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA016	6e-04

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 71.1 bits (174), Expect = 1e-16
 Identities = 20/46 (43%), Positives = 27/46 (58%), Gaps = 1/46 (2%)

Query: 188 CAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRREL 232
           CAVC    +   EAR +P C H +H EC+  WL   ++CPLCR  +
Sbjct: 8   CAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 63.8 bits (155), Expect = 6e-14
 Identities = 13/46 (28%), Positives = 22/46 (47%), Gaps = 2/46 (4%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELP 233
           C +C E     + +  +PC H +   CI  W+    +CPLC+  + 
Sbjct: 8   CPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVE 51

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.5 bits (151), Expect = 4e-13
 Identities = 16/64 (25%), Positives = 20/64 (31%), Gaps = 15/64 (23%)

Query: 183 AKESHCAVCKEPF---------------QLNSEAREMPCKHIYHGECILPWLSMRNSCPL 227
               +CA+C+                            C H +H  CI  WL  R  CPL
Sbjct: 19  IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPL 78

Query: 228 CRRE 231
             RE
Sbjct: 79  DNRE 82

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (140), Expect = 1e-11
 Identities = 13/46 (28%), Positives = 20/46 (43%), Gaps = 4/46 (8%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRREL 232
           C +C E  +   + +  PC H+    C+  W       CP CR E+
Sbjct: 26  CKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEI 68

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.3 bits (128), Expect = 2e-10
 Identities = 11/50 (22%), Positives = 19/50 (38%), Gaps = 6/50 (12%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEAN 237
           C  C+   +     + +PC H     C+         CP+C+   P  A+
Sbjct: 9   CQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (127), Expect = 4e-10
 Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 3/51 (5%)

Query: 185 ESHCAVCKEPFQLNSEAREM--PCKHIYHGECILPWLSMR-NSCPLCRREL 232
           +  C  CK     N   + M   C H     C+         +CP C   L
Sbjct: 3   DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPL 53

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.6 bits (123), Expect = 9e-10
 Identities = 12/50 (24%), Positives = 20/50 (40%), Gaps = 2/50 (4%)

Query: 188 CAVCKEPFQLN-SEAREMPCKHIYHGECILPWLSMRN-SCPLCRRELPNE 235
           C +C EP +++        C +     C     +  N  CP CR+  P +
Sbjct: 3   CPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 52

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.3 bits (117), Expect = 2e-08
 Identities = 16/72 (22%), Positives = 30/72 (41%), Gaps = 11/72 (15%)

Query: 172 MPVVTIAE-----SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN--- 223
           +  + + E     + + K   C +C E  +   E     C HI+   C+L  L+ +    
Sbjct: 3   LSALRVEEVQNVINAMQKILECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPS 59

Query: 224 SCPLCRRELPNE 235
            CPLC+ ++   
Sbjct: 60  QCPLCKNDITKR 71

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 44.9 bits (105), Expect = 3e-07
 Identities = 9/51 (17%), Positives = 14/51 (27%), Gaps = 4/51 (7%)

Query: 185 ESHCAVCKEPFQLNSEAREMP--CKHIYHGECILPWLS--MRNSCPLCRRE 231
              C +C E                   H  C+  WL+     +C +C   
Sbjct: 6   VPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 44.9 bits (106), Expect = 5e-07
 Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)

Query: 180 SHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNS-CPLCRREL 232
           +H  K   C +C+       +  E  CKH++   CIL  L +  S CP CR   
Sbjct: 18  AHFVKSISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPC 68

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 114

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.9 bits (102), Expect = 2e-06
 Identities = 12/54 (22%), Positives = 16/54 (29%), Gaps = 5/54 (9%)

Query: 181 HVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN-----SCPLCR 229
            VA         +        R   C H +H  C+L      N      CP C+
Sbjct: 36  AVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCK 89

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 42.1 bits (98), Expect = 2e-06
 Identities = 6/48 (12%), Positives = 16/48 (33%), Gaps = 2/48 (4%)

Query: 188 CAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE 235
           CA+  +  +          + I+    +  ++    + P+    L  E
Sbjct: 3   CAISGKVPR--RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 48

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.5 bits (99), Expect = 5e-06
 Identities = 11/70 (15%), Positives = 19/70 (27%), Gaps = 7/70 (10%)

Query: 163 PASKAAIESMPVVTIAESHVAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR 222
           P  + A         A   + K   C+ C    +         C+HI+   C+   +   
Sbjct: 3   PDGRGAWAH---SRAALDRLEKLLRCSRCTNILREPV--CLGGCEHIFCSNCVSDCIGTG 57

Query: 223 NSCPLCRREL 232
                C    
Sbjct: 58  CPV--CYTPA 65

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (84), Expect = 6e-04
 Identities = 9/53 (16%), Positives = 18/53 (33%), Gaps = 8/53 (15%)

Query: 185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN--------SCPLCR 229
            S C +C   + +        C+ I+   C+  ++ +          SCP   
Sbjct: 5   SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAA 57

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.59
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.41
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	99.38
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	99.33
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	99.3
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.25
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	99.25
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	99.1
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	99.05
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	99.05
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	99.0
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.89
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.87
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.84
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.8
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.62
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	98.17
d1f62a_	51	Williams-Beuren syndrome transcription factor, WST	90.32
d1we9a_	64	PHD finger protein At5g26210 {Thale cress (Arabido	89.29
d1fp0a1	70	Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo	88.74
d1weva_	88	PHD finger protein 22 {Mouse (Mus musculus) [TaxId	86.08

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.59  E-value=2.5e-16  Score=114.65  Aligned_cols=51  Identities=39%  Similarity=0.882  Sum_probs=46.4

Q ss_pred             cCCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELP  233 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~  233 (374)
                      +++.+|+||+++|+.++.+..++ |+|.||..||.+||+.+++||+||++|.
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~Fh~~Ci~~Wl~~~~~CP~CR~~i~   54 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCcccHHHHHHHHHhCCcCCCCCCEeE
Confidence            34577999999999999998886 9999999999999999999999999874

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.41  E-value=8.3e-14  Score=104.86  Aligned_cols=49  Identities=27%  Similarity=0.748  Sum_probs=43.1

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      .+.|+||++.|.  +.++.+||+|.||..||.+||+.+.+||+||+++...
T Consensus         5 ~d~C~IC~~~~~--~~~~~~~C~H~Fc~~Ci~~w~~~~~~CP~CR~~i~~~   53 (68)
T d1chca_           5 AERCPICLEDPS--NYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVESV   53 (68)
T ss_dssp             CCCCSSCCSCCC--SCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCCE
T ss_pred             CCCCccCCcCcc--CCcEEeCCCCcCcHHHHHHHHHhCCcCCCCCcchHhh
Confidence            467999999985  3567899999999999999999999999999988653

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.38  E-value=2.8e-13  Score=111.02  Aligned_cols=54  Identities=24%  Similarity=0.571  Sum_probs=42.7

Q ss_pred             CCCcccccCCcccc---------------CCCeEEccccCccchhhHHHHHhcC-----CCCCccCccCCCCCC
Q 017269          184 KESHCAVCKEPFQL---------------NSEAREMPCKHIYHGECILPWLSMR-----NSCPLCRRELPNEAN  237 (374)
Q Consensus       184 ~~~~C~ICle~f~~---------------~~~~~~lpC~H~FH~~CI~~WL~~~-----~sCPvCR~~l~~~~~  237 (374)
                      .+..|+||+++|..               ...+..++|+|+||..||..||+..     .+||+||+.+..+..
T Consensus        24 ~~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~~~~   97 (114)
T d1v87a_          24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEKTG   97 (114)
T ss_dssp             CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSCSS
T ss_pred             ccccccchhheecccccccccccccccccccceEECCCCChhhHHHHHHHHHhcCcCCCCccccccchhccCcC
Confidence            35789999998753               2245678899999999999999743     479999998866643

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=3.1e-13  Score=106.58  Aligned_cols=51  Identities=31%  Similarity=0.619  Sum_probs=42.8

Q ss_pred             CCCcccccCCccccCC---------------CeEEccccCccchhhHHHHHhcCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNS---------------EAREMPCKHIYHGECILPWLSMRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~---------------~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~  234 (374)
                      .++.|+||++.+....               .+..++|+|.||..||.+||+.+++||+||+++..
T Consensus        20 ~~d~C~IC~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~   85 (88)
T d3dplr1          20 VVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWEF   85 (88)
T ss_dssp             CSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCCE
T ss_pred             CCCcCEEccchhhCccccccccccccccccCCeEEccccCcccHHHHHHHHHHCCcCCCCCCcccc
Confidence            3567999999875422               36778899999999999999999999999998754

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.30  E-value=2.8e-13  Score=96.95  Aligned_cols=49  Identities=22%  Similarity=0.558  Sum_probs=41.1

Q ss_pred             cccccCCccccCCC-eEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269          187 HCAVCKEPFQLNSE-AREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE  235 (374)
Q Consensus       187 ~C~ICle~f~~~~~-~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~  235 (374)
                      +|+||+++|+.++. ++.++|+|.||.+||.+|++. +.+||+||+++.++
T Consensus         2 eCpICl~~~~~~~~~~~~~~CgH~~c~~C~~~w~~~~~~~CP~CR~~~~~d   52 (52)
T d1ur6b_           2 ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED   52 (52)
T ss_dssp             EETTTTEECCGGGTTCCSSSSSCCCCHHHHHHHTTTSCCBCTTTCCBCSCC
T ss_pred             CCcCCChhhhCCCceEEecCCCCccchHHHHHHHhhcCCCCCccCCcCCCC
Confidence            69999999987654 456689999999999999985 45799999988653

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.2e-12  Score=99.80  Aligned_cols=49  Identities=27%  Similarity=0.749  Sum_probs=42.1

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHh-cCCCCCccCccCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLS-MRNSCPLCRRELPNEA  236 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~-~~~sCPvCR~~l~~~~  236 (374)
                      ...|+||++.+.   .++.+||+|.||..||..||+ ++++||+||..|...+
T Consensus        23 ~~~C~IC~~~~~---~~~~~~CgH~fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~   72 (79)
T d1fbva4          23 FQLCKICAENDK---DVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTE   72 (79)
T ss_dssp             TTBCTTTSSSBC---CEECSSSCCEECHHHHHHHHHTTCCSCTTTCCCCCCCC
T ss_pred             CCCCccCCCcCC---CeEEeCCCCeeeHHHHHHHHHHCcCcCCCCCcCccCCc
Confidence            357999998875   678999999999999999997 5578999999997653

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=1.9e-12  Score=96.48  Aligned_cols=51  Identities=22%  Similarity=0.440  Sum_probs=41.2

Q ss_pred             CCcccccCCccccCC--CeEEccccCccchhhHHHHHhc-CCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNS--EAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~--~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~  235 (374)
                      +..|+||++.+....  ...+++|+|.||..||..||+. +.+||+||..|...
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~~CP~CR~~i~~~   56 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS   56 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred             CCCCCcCCceeecCCceEEEeCccChHhhHHHHHHHhCcCcCCCCCCCcCcccc
Confidence            578999999864432  3466789999999999999954 56899999988654

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=99.10  E-value=1.1e-11  Score=89.80  Aligned_cols=48  Identities=15%  Similarity=0.252  Sum_probs=41.7

Q ss_pred             cccccCCccccCCCeEEcc-ccCccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      .|+||++.|+   +.+.++ |+|.||..||.+||+.+++||+||.++..++.
T Consensus         2 ~C~Ic~~~~~---~Pv~~~~cGh~fc~~cI~~~l~~~~~CP~c~~~l~~~dL   50 (56)
T d2baya1           2 LCAISGKVPR---RPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEI   50 (56)
T ss_dssp             CCTTTCSCCS---SEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGGGC
T ss_pred             CCccCCchHH---hcCccCCCCCcccHHHHHHHHhhccCCCccCCcCCHHhc
Confidence            5999999886   566665 99999999999999999999999999877643

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.05  E-value=2.2e-11  Score=95.82  Aligned_cols=50  Identities=28%  Similarity=0.637  Sum_probs=42.4

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNEAN  237 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~~  237 (374)
                      +..|+||++.|+   ++++++|+|.||..||..|++. +..||+||.++...+.
T Consensus        23 ~l~C~IC~~~~~---~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~p~~~~~l   73 (86)
T d1rmda2          23 SISCQICEHILA---DPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFPTDL   73 (86)
T ss_dssp             HTBCTTTCSBCS---SEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCGGGC
T ss_pred             CcCCccCCcchh---cceecCCCChhhHHHHHHHHhhCCCcCcccCCCCChhhc
Confidence            367999999886   6789999999999999999974 4589999998866543

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.05  E-value=2.2e-11  Score=88.40  Aligned_cols=45  Identities=24%  Similarity=0.634  Sum_probs=38.9

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNEA  236 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~~  236 (374)
                      ..|+||++.|.   +.+++||+|.||..||..|   +.+||+||.+++...
T Consensus         7 l~C~IC~~~~~---~p~~lpCgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~   51 (56)
T d1bora_           7 LRCQQCQAEAK---CPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGA   51 (56)
T ss_dssp             SSCSSSCSSCB---CCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCS
T ss_pred             CCCcccCcccC---CCEEecCCCHHhHHHHHcC---CCcCcCCCCcccCCC
Confidence            58999999986   4678999999999999876   668999999997663

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=8e-11  Score=94.75  Aligned_cols=48  Identities=29%  Similarity=0.818  Sum_probs=40.6

Q ss_pred             CcccccCCccccCCCeEEccccCccchhhHHHHHhcCC---CCCccCccCCCCC
Q 017269          186 SHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRN---SCPLCRRELPNEA  236 (374)
Q Consensus       186 ~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~---sCPvCR~~l~~~~  236 (374)
                      ..|+||++.|+   ++++++|+|.||..||..|++..+   .||+||.++...+
T Consensus        22 l~CpIC~~~~~---~pv~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~~   72 (103)
T d1jm7a_          22 LECPICLELIK---EPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRS   72 (103)
T ss_dssp             TSCSSSCCCCS---SCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCTTT
T ss_pred             cCCCccCchhC---CeEEcCCCCchhhHHHHHHHHHCCCCCcCcCCCCcCChhh
Confidence            57999999886   566789999999999999997553   7999999886543

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.89  E-value=3e-10  Score=82.80  Aligned_cols=48  Identities=21%  Similarity=0.492  Sum_probs=36.9

Q ss_pred             CCCcccccCCccccCCCeEEcc-----ccCccchhhHHHHHh--cCCCCCccCccCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-----CKHIYHGECILPWLS--MRNSCPLCRRELPN  234 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-----C~H~FH~~CI~~WL~--~~~sCPvCR~~l~~  234 (374)
                      +...|.||++++...   ...|     |.|.||..||..|+.  .+.+||+||+++..
T Consensus         5 d~~~C~IC~~~~~~~---~~~~c~c~~c~h~~H~~Cl~~W~~~~~~~~CP~Cr~~~~~   59 (60)
T d1vyxa_           5 DVPVCWICNEELGNE---RFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT   59 (60)
T ss_dssp             SCCEETTTTEECSCC---CCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred             CCCCCccCCccCCCc---eeEecccCCCCCEEcHHHHHHHHhhCCCCCCcccCCeeec
Confidence            457899999987532   2334     459999999999994  45689999998753

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.87  E-value=7.4e-10  Score=85.07  Aligned_cols=51  Identities=20%  Similarity=0.153  Sum_probs=43.2

Q ss_pred             cCCCcccccCCccccCCCeEEccccCccchhhHHHHHhc-CCCCCccCccCCCCC
Q 017269          183 AKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-RNSCPLCRRELPNEA  236 (374)
Q Consensus       183 ~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-~~sCPvCR~~l~~~~  236 (374)
                      .++..|+||++.|.   +.++++|+|.|+..||..||.. +.+||+|+.++...+
T Consensus         5 P~~l~CpIc~~l~~---dPv~~~cGhtfc~~ci~~~l~~~~~~cP~c~~~l~~~~   56 (80)
T d2c2la2           5 PDYLCGKISFELMR---EPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQEQ   56 (80)
T ss_dssp             CSTTBCTTTCSBCS---SEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCGGG
T ss_pred             CccccCcCcCchhh---hhcccCCcCeecHHHHHHHHhcCCccCCCccccccccc
Confidence            35688999999886   6778999999999999999964 568999999886553

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.84  E-value=1.2e-09  Score=83.45  Aligned_cols=52  Identities=17%  Similarity=0.413  Sum_probs=44.0

Q ss_pred             ccCCCcccccCCccccCCCeEEccccCccchhhHHHHHhcC-CCCCccCccCCCCC
Q 017269          182 VAKESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMR-NSCPLCRRELPNEA  236 (374)
Q Consensus       182 ~~~~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~-~sCPvCR~~l~~~~  236 (374)
                      +.++..|+||++.|.   +.++++|+|.|+..||..|++.+ ..||+|+.++...+
T Consensus         5 iP~~l~CpIc~~~m~---dPV~~~cgh~fc~~ci~~~~~~~~~~cP~~~~~l~~~~   57 (78)
T d1t1ha_           5 FPEYFRCPISLELMK---DPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLHAG   57 (78)
T ss_dssp             CSSSSSCTTTSCCCS---SEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSSCC
T ss_pred             CCccCCCcCcCchhh---CceEccCCCcchHHHHHHHHHHCCCCCCcccccCCccc
Confidence            345688999999886   67789999999999999999764 57999999887653

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.80  E-value=8.4e-10  Score=87.69  Aligned_cols=47  Identities=19%  Similarity=0.509  Sum_probs=37.5

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhcCCCCCccCccCCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSMRNSCPLCRRELPNE  235 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~~~sCPvCR~~l~~~  235 (374)
                      ...|+||++.|..  .+...+|+|.||..||..|+.  +.||+||..+...
T Consensus        22 ~l~C~IC~~~~~~--pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~~~   68 (97)
T d1jm7b_          22 LLRCSRCTNILRE--PVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAWIQ   68 (97)
T ss_dssp             TTSCSSSCSCCSS--CBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCSCS
T ss_pred             cCCCccCCchhhc--CceeCCCCCchhHHHHHHHHh--ccccccCCcCchh
Confidence            4679999999862  333457999999999999984  4599999887554

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.1e-08  Score=81.57  Aligned_cols=51  Identities=14%  Similarity=0.096  Sum_probs=43.9

Q ss_pred             CCCcccccCCccccCCCeEEcccc-CccchhhHHHHHhcCCCCCccCccCCCCCC
Q 017269          184 KESHCAVCKEPFQLNSEAREMPCK-HIYHGECILPWLSMRNSCPLCRRELPNEAN  237 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lpC~-H~FH~~CI~~WL~~~~sCPvCR~~l~~~~~  237 (374)
                      .+..|+||++.|.   ++++++|+ |.|+..||..||+.+.+||+|+.+|..++.
T Consensus        21 ~~f~CPI~~~lm~---dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~~~L   72 (98)
T d1wgma_          21 DEFLDPIMSTLMC---DPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTMDQI   72 (98)
T ss_dssp             TTTBCTTTCSBCS---SEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCTTTS
T ss_pred             HHhCCcCchhHHH---HHHhcccccchhhHHHHHHHHHhcCCcccccccccchhh
Confidence            4689999999887   78899966 589999999999999999999998876543

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=2.7e-07  Score=72.00  Aligned_cols=46  Identities=20%  Similarity=0.543  Sum_probs=36.4

Q ss_pred             CCcccccCCccccCCCeEEccccCccchhhHHHHHhc-----CC---CCCccCc
Q 017269          185 ESHCAVCKEPFQLNSEAREMPCKHIYHGECILPWLSM-----RN---SCPLCRR  230 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lpC~H~FH~~CI~~WL~~-----~~---sCPvCR~  230 (374)
                      ...|+||++++...+....++|+|.||.+||..|++.     ..   .||.|.-
T Consensus         5 ~~~C~IC~~~~~~~~~~~~~~C~H~fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C   58 (94)
T d1wima_           5 SSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAAC   58 (94)
T ss_dssp             BCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTC
T ss_pred             CCcCccCCCcccCCceEEECCCCCEeCCcCHHHHHHHHHhcCCccccCCcCCCC
Confidence            4689999999976666666789999999999999942     11   5998643

>d1f62a_ g.50.1.2 (A:) Williams-Beuren syndrome transcription factor, WSTF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Williams-Beuren syndrome transcription factor, WSTF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.32  E-value=0.06  Score=36.26  Aligned_cols=43  Identities=26%  Similarity=0.576  Sum_probs=29.7

Q ss_pred             cccccCCccccCCCeEEcc-ccCccchhhHHHHHhc----CCCCCccCc
Q 017269          187 HCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSM----RNSCPLCRR  230 (374)
Q Consensus       187 ~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~----~~sCPvCR~  230 (374)
                      .|.||...-.. +..+.-. |...||..|+.+-+..    .-.||.|+.
T Consensus         2 ~C~vC~~~~~~-~~~i~Cd~C~~~~H~~C~~p~~~~~p~~~W~C~~C~~   49 (51)
T d1f62a_           2 RCKVCRKKGED-DKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP   49 (51)
T ss_dssp             CCTTTCCSSCC-SCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred             CCcCcCCCCCC-CCEEEcCCCCCCCCCCCCCCCCCcCCCCCEECcCCcC
Confidence            58899765432 2333333 9999999999987743    226999974

>d1we9a_ g.50.1.2 (A:) PHD finger protein At5g26210 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein At5g26210
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=89.29  E-value=0.035  Score=39.26  Aligned_cols=47  Identities=21%  Similarity=0.576  Sum_probs=33.4

Q ss_pred             CCCcccccCCccccCCCeEEcc-ccCccchhhHHHHHh-----cCCCCCccCc
Q 017269          184 KESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLS-----MRNSCPLCRR  230 (374)
Q Consensus       184 ~~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~-----~~~sCPvCR~  230 (374)
                      ....|.||.+....++..+.-. |+..||..|+..-..     .+-.||.|+.
T Consensus         5 ~~~~C~~C~~~~~~~~~~I~Cd~C~~w~H~~C~~~~~~~~~~~~~w~C~~C~~   57 (64)
T d1we9a_           5 SSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSN   57 (64)
T ss_dssp             SCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHT
T ss_pred             CCCcCcCcCCCCCCCCCEEEcCCCCccCCcccCCcChHHCCCCCeEECcCCcC
Confidence            3468999998776655555444 999999999964221     2347999965

>d1fp0a1 g.50.1.2 (A:19-88) Nuclear corepressor KAP-1 (TIF-1beta) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: Nuclear corepressor KAP-1 (TIF-1beta)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.74  E-value=0.14  Score=36.79  Aligned_cols=46  Identities=30%  Similarity=0.598  Sum_probs=31.0

Q ss_pred             CCcccccCCccccCCCeEEcc-ccCccchhhHHHHHhcC----CCCCccCccCCC
Q 017269          185 ESHCAVCKEPFQLNSEAREMP-CKHIYHGECILPWLSMR----NSCPLCRRELPN  234 (374)
Q Consensus       185 ~~~C~ICle~f~~~~~~~~lp-C~H~FH~~CI~~WL~~~----~sCPvCR~~l~~  234 (374)
                      ...|.||.+.   ++ +..-. |...||..|+.+.|...    -.||.|+.....
T Consensus         7 c~~C~~C~~~---~~-ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~~~   57 (70)
T d1fp0a1           7 ATICRVCQKP---GD-LVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVLPDL   57 (70)
T ss_dssp             SSCCSSSCSS---SC-CEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCCCSS
T ss_pred             CCCCCCCCCc---CE-EEECCCCChhhccccCCCCcCcCCCCCEECcCCcCcCcc
Confidence            4567777542   33 33333 99999999999988533    369999765433

>d1weva_ g.50.1.2 (A:) PHD finger protein 22 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: FYVE/PHD zinc finger
superfamily: FYVE/PHD zinc finger
family: PHD domain
domain: PHD finger protein 22
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=86.08  E-value=0.1  Score=38.96  Aligned_cols=49  Identities=24%  Similarity=0.643  Sum_probs=32.1

Q ss_pred             CCcccccCCccccC-CCeEEcc-ccCccchhhHHHHHh--------cCCCCCccCccCC
Q 017269          185 ESHCAVCKEPFQLN-SEAREMP-CKHIYHGECILPWLS--------MRNSCPLCRRELP  233 (374)
Q Consensus       185 ~~~C~ICle~f~~~-~~~~~lp-C~H~FH~~CI~~WL~--------~~~sCPvCR~~l~  233 (374)
                      ...|.||....... ..++... |...||..|+.+.+.        ..-.||.|.....
T Consensus        16 ~~~C~iC~~~~~~~~~~~v~Cd~C~~~~H~~C~~p~~~~~~~~~~~~~W~C~~C~~~~~   74 (88)
T d1weva_          16 GLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK   74 (88)
T ss_dssp             CCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred             cCCccCCCCccCCCCCeEEEcCCCCCccccccCCCcccccccccCCCeEECcccCchHh
Confidence            36799998654332 2333333 999999999876542        1347999976543