Citrus Sinensis ID: 017279

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHPAH
Secondary Structure (PSIPRED)
cccccccccccccHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEcccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHccccccEEEccccccccHHHHHHHHHcccccccccccccccccccccccEEcccccccccHHHHHHHHHHcccccccccccEEEEcccccccHHHHHHHHHHcccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccHHHHHHHcccccccccccccccccccccccHHcccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHccccccEEEcHHHHHHccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHccccccEEEccccccccccccccEEEccccccccHHHHHHHHHHccccHHcccccEEEccccHHHHHHHHHHHHHHHHHHHccccccc
Coil and Loop (DISEMBL)
mvgeatnlssedLNLCFEKMMMAgagadraggvkmdgvvitewkDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTlvlrqdkpqledNAVEAIANschdlqdldlsksfklsdrSLYALAhgcpnltrlnisgctsfsDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNqlqslnlgwcedvgdvgvmnlaygcpdlrsldlcgcvcitdDSVIALangcphlrslGLYYCRNITDRAIYSLAQsgvknkpgiwesmkgrydeeglqslnisqctaltppavqalcdtfpalhtcsgrhslvmsgclnltsvhcvcagqshrtassiphpah
Flexible Loop (DISEMBL)
mvgeatnlsseDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLaqsgvknkpgIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQshrtassiphpah
Low Complexity Region (SEG)
MVGEATNLSSEDLNLCFEKmmmagagadraggVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHPAH
Disordered region (IsUnstruct)
************LNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG**************
Disordered Region (DISOPRED)
*************************************VVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPH***
Disordered Region (DISEMBL)
********SSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQ*************
Disordered Region (DISPRO)
**********************************M*GVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSI*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHPAH
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q9LPL4	360	F-box protein SKP2A OS=Ar	yes	no	0.954	0.991	0.749	1e-163
O49286	360	F-box protein SKP2B OS=Ar	no	no	0.959	0.997	0.738	1e-160
A6H779	423	F-box/LRR-repeat protein	yes	no	0.668	0.591	0.303	1e-24
Q96IG2	436	F-box/LRR-repeat protein	no	no	0.703	0.603	0.288	3e-23
Q58DG6	436	F-box/LRR-repeat protein	no	no	0.703	0.603	0.288	3e-23
Q9QZH7	276	F-box/LRR-repeat protein	no	no	0.668	0.905	0.286	7e-23
Q9UKC9	423	F-box/LRR-repeat protein	no	no	0.711	0.628	0.294	7e-23
Q5R3Z8	423	F-box/LRR-repeat protein	yes	no	0.711	0.628	0.294	9e-23
Q9CZV8	436	F-box/LRR-repeat protein	yes	no	0.703	0.603	0.285	1e-22
Q8BH16	423	F-box/LRR-repeat protein	no	no	0.679	0.600	0.292	1e-22

>sp|Q9LPL4|SKP2A_ARATH F-box protein SKP2A OS=Arabidopsis thaliana GN=SKP2A PE=1 SV=1

 Score =  575 bits (1482), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 281/375 (74%), Positives = 321/375 (85%), Gaps = 18/375 (4%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GEA    S +L+ CF+KM             KM+G+ I EWKDIP+ELL+RILSLVD+
Sbjct: 3   MGGEA----SMELDQCFQKM-------------KMEGISIKEWKDIPVELLMRILSLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
             VIVASGVC+GWRDAI  GLT L LSWC NNMN+LVLSL PK  KLQTL LRQDKPQLE
Sbjct: 46  RNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQ+LDLSKS K++DRSLYALAHGCP+LT+LN+SGCTSFSD A+AYL 
Sbjct: 106 DNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCRKLK+LNLCGCVKA TD AL+AIG NCNQ+QSLNLGWCE++ D GVM+LAYGCPDLR
Sbjct: 166 RFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLR 225

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM- 299
           +LDLCGCV ITD+SV+ALA+ C HLRSLGLYYCRNITDRA+YSLAQSGVKNKPG W+S+ 
Sbjct: 226 TLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVK 285

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
           KG+YDEEGL+SLNISQCTALTP AVQA+CD+FPALHTCSGRHSLVMSGCLNLT+VHC C 
Sbjct: 286 KGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACI 345

Query: 360 GQSHRTASSIPHPAH 374
            Q+HR  +++PHPAH
Sbjct: 346 LQAHRAHNAVPHPAH 360

Component of SCF(SKP2A) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of target proteins (including cell cycle repressors). Acts as an auxin receptor. Regulates the stability of the transcription factors E2FC and DPB, repressors of cell proliferation. Confers increase tolerance to osmotic stress by promoting cell division, especially in meristems. Promotes the formation of lateral root primordia.
Arabidopsis thaliana (taxid: 3702)

>sp|O49286|SKP2B_ARATH F-box protein SKP2B OS=Arabidopsis thaliana GN=SKP2B PE=1 SV=1

 Score =  564 bits (1453), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 277/375 (73%), Positives = 317/375 (84%), Gaps = 16/375 (4%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MV E    + ++LNLCFE M             KM+GV+I+EWKDIP+ELL++IL+LVD+
Sbjct: 1   MVSEGA--TRKELNLCFENM-------------KMEGVLISEWKDIPVELLMKILNLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLE
Sbjct: 46  RTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQDLDLSKS K++D SLY+LA GC NLT+LN+SGCTSFSD ALA+L 
Sbjct: 106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCRKLKILNLCGCV+A +D  LQAIG NCNQLQSLNLGWCE++ D GVM+LAYGCPDLR
Sbjct: 166 RFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLR 225

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM- 299
           +LDLC CV ITD+SV+ALAN C HLRSLGLYYCRNITDRA+YSLAQSGVKNK  +W ++ 
Sbjct: 226 TLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVK 285

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
           KG++DEEGL+SLNISQCT LTP AVQA+CDTFPALHTCSGRHSLVMSGCLNL SVHC C 
Sbjct: 286 KGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACI 345

Query: 360 GQSHRTASSIPHPAH 374
            Q+HRT +  PHPAH
Sbjct: 346 LQAHRTHTVYPHPAH 360

Component of SCF(SKP2B) E3 ubiquitin ligase complexes, which mediate the ubiquitination and subsequent proteasomal degradation of the cyclin-dependent kinase inhibitor KRP1. Does not interact with auxin.

Arabidopsis thaliana (taxid: 3702)

>sp|A6H779|FBXL2_BOVIN F-box/LRR-repeat protein 2 OS=Bos taurus GN=FBXL2 PE=2 SV=1

 Score =  114 bits (284), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 89/293 (30%), Positives = 128/293 (43%), Gaps = 43/293 (14%)

Query: 44  KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK 103
           K +P ELLLRI S +D  T+   + +   W                          LA  
Sbjct: 13  KKLPKELLLRIFSFLDIVTLCRCAQISKAWN------------------------ILALD 48

Query: 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            +  Q + L   +  +E   VE I+  C   L+ L L     + D SL   A  C N+  
Sbjct: 49  GSNWQRIDLFNFQTDVEGRVVENISKRCGGFLRKLSLRGCIGVGDSSLKTFAQNCRNIEH 108

Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222
           LN++GCT  +D     L  FC KLK L+L  CV + T+ +L+ I   C  L+ LNL WC+
Sbjct: 109 LNLNGCTKITDSTCYSLSRFCSKLKHLDLTSCV-SITNSSLKGISEGCRHLEYLNLSWCD 167

Query: 223 DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY 282
            +   GV  L  GC  LR+L L GC  + D+++  + N C  L SL L  C  +TD  + 
Sbjct: 168 QITKDGVEALVRGCRGLRALLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRVTDDGVV 227

Query: 283 SLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALH 335
            L +   +                 LQ+L +S C +LT  ++ AL    P L 
Sbjct: 228 QLCRGCPR-----------------LQALCLSGCGSLTDASLTALALNCPRLQ 263

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Bos taurus (taxid: 9913)

>sp|Q96IG2|FXL20_HUMAN F-box/LRR-repeat protein 20 OS=Homo sapiens GN=FBXL20 PE=1 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 134/312 (42%), Gaps = 49/312 (15%)

Query: 44  KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK 103
           K +P ELLLRI S +D  T+   + V   W                          LA  
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWN------------------------VLALD 61

Query: 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            +  Q + L   +  +E   VE I+  C   L+ L L     + D +L   A  C N+  
Sbjct: 62  GSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEV 121

Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222
           LN++GCT  +D     L  FC KL+ L+L  C  + T+ +L+A+   C  L+ LN+ WC+
Sbjct: 122 LNLNGCTKTTDATCTSLSKFCSKLRHLDLASCT-SITNMSLKALSEGCPLLEQLNISWCD 180

Query: 223 DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY 282
            V   G+  L  GC  L++L L GC  + D+++  +   CP L +L L  C  ITD  + 
Sbjct: 181 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI 240

Query: 283 SLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 342
           ++ +   K                 LQSL  S C+ +T   + AL    P L        
Sbjct: 241 TICRGCHK-----------------LQSLCASGCSNITDAILNALGQNCPRLRI------ 277

Query: 343 LVMSGCLNLTSV 354
           L ++ C  LT V
Sbjct: 278 LEVARCSQLTDV 289

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Homo sapiens (taxid: 9606)

>sp|Q58DG6|FXL20_BOVIN F-box/LRR-repeat protein 20 OS=Bos taurus GN=FBXL20 PE=2 SV=2

 Score =  109 bits (273), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/312 (28%), Positives = 134/312 (42%), Gaps = 49/312 (15%)

Query: 44  KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK 103
           K +P ELLLRI S +D  T+   + V   W                          LA  
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWN------------------------VLALD 61

Query: 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            +  Q + L   +  +E   VE I+  C   L+ L L     + D +L   A  C N+  
Sbjct: 62  GSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEV 121

Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222
           LN++GCT  +D     L  FC KL+ L+L  C  + T+ +L+A+   C  L+ LN+ WC+
Sbjct: 122 LNLNGCTKTTDATCTSLSKFCSKLRHLDLASCT-SITNMSLKALSEGCPLLEQLNISWCD 180

Query: 223 DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY 282
            V   G+  L  GC  L++L L GC  + D+++  +   CP L +L L  C  ITD  + 
Sbjct: 181 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI 240

Query: 283 SLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 342
           ++ +   K                 LQSL  S C+ +T   + AL    P L        
Sbjct: 241 TICRGCHK-----------------LQSLCASGCSNITDAILNALGQNCPRLRI------ 277

Query: 343 LVMSGCLNLTSV 354
           L ++ C  LT V
Sbjct: 278 LEVARCSQLTDV 289

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Bos taurus (taxid: 9913)

>sp|Q9QZH7|FXL20_RAT F-box/LRR-repeat protein 20 OS=Rattus norvegicus GN=Fbxl20 PE=1 SV=1

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 84/293 (28%), Positives = 127/293 (43%), Gaps = 43/293 (14%)

Query: 44  KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK 103
           K +P ELLLRI S +D  T+   + V   W                          LA  
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWN------------------------VLALD 61

Query: 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            +  Q + L   +  +E   VE I+  C   L+ L L     + D +L   A  C N+  
Sbjct: 62  GSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEV 121

Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222
           L+++GCT  +D     L  FC KL+ L+L  C  + T+ +L+A+   C  L+ LN+ WC+
Sbjct: 122 LSLNGCTKTTDATCTSLSKFCSKLRHLDLASCT-SITNMSLKALSEGCPLLEQLNISWCD 180

Query: 223 DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY 282
            V   G+  L  GC  L++L L GC  + D+++  +   CP L +L L  C  ITD  + 
Sbjct: 181 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI 240

Query: 283 SLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALH 335
           ++ +   K                 LQSL  S C+ +T   + AL    P L 
Sbjct: 241 TICRGCHK-----------------LQSLCASGCSNITDAILNALGQNCPRLR 276

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Role in neural transmission.

Rattus norvegicus (taxid: 10116)

>sp|Q9UKC9|FBXL2_HUMAN F-box/LRR-repeat protein 2 OS=Homo sapiens GN=FBXL2 PE=1 SV=3

 Score =  108 bits (270), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 29/295 (9%)

Query: 77  ICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
            C  L HL L+ C +  N+ +  ++     L+ L L     Q+  + +EA+   C  L+ 
Sbjct: 128 FCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSW-CDQITKDGIEALVRGCRGLKA 186

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
           L L    +L D +L  + + C  L  LN+  C+  +D  +  +C  C +L+ L L GC  
Sbjct: 187 LLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGC-S 245

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
             TD +L A+G NC +LQ L    C  + D G   LA  C +L  +DL  C+ ITD ++I
Sbjct: 246 NLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLI 305

Query: 257 ALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 316
            L+  CP L++L L +C  ITD  I  L+ S   +              E L+ L +  C
Sbjct: 306 QLSIHCPKLQALSLSHCELITDDGILHLSNSTCGH--------------ERLRVLELDNC 351

Query: 317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPH 371
             +T  A++        L  C G   L +  C  +T      AG   R  + +PH
Sbjct: 352 LLITDVALE-------HLENCRGLERLELYDCQQVTR-----AGIK-RMRAQLPH 393

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation. Binds to hepatitis C virus non-structural protein 5A (NS5A) in a reaction crucial for hepatitis C virus RNA replication.

Homo sapiens (taxid: 9606)

>sp|Q5R3Z8|FBXL2_PONAB F-box/LRR-repeat protein 2 OS=Pongo abelii GN=FBXL2 PE=2 SV=1

 Score =  108 bits (269), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/295 (29%), Positives = 134/295 (45%), Gaps = 29/295 (9%)

Query: 77  ICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
            C  L HL L+ C +  N+ +  ++     L+ L L     Q+  + +EA+   C  L+ 
Sbjct: 128 FCSKLKHLDLTSCVSITNSSLKGISEGCRNLEYLNLSW-CDQITKDGIEALVRGCRGLKA 186

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
           L L    +L D +L  + + C  L  LN+  C+  +D  +  +C  C +L+ L L GC  
Sbjct: 187 LLLRGCTQLEDEALKHIQNYCHELVSLNLQSCSRITDEGVVQICRGCHRLQALCLSGC-S 245

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
             TD +L A+G NC +LQ L    C  + D G   LA  C +L  +DL  C+ ITD ++I
Sbjct: 246 NLTDASLTALGLNCPRLQILEAARCSHLTDAGFTLLARNCHELEKMDLEECILITDSTLI 305

Query: 257 ALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC 316
            L+  CP L++L L +C  ITD  I  L+ S   +              E L+ L +  C
Sbjct: 306 QLSIHCPKLQALSLSHCELITDDGILHLSNSTCGH--------------ERLRVLELDNC 351

Query: 317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPH 371
             +T  A++        L  C G   L +  C  +T      AG   R  + +PH
Sbjct: 352 LLITDVALE-------HLENCRGLERLELYDCQQVTR-----AGIK-RMRAQLPH 393

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Pongo abelii (taxid: 9601)

>sp|Q9CZV8|FXL20_MOUSE F-box/LRR-repeat protein 20 OS=Mus musculus GN=Fbxl20 PE=1 SV=3

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 89/312 (28%), Positives = 134/312 (42%), Gaps = 49/312 (15%)

Query: 44  KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK 103
           K +P ELLLRI S +D  T+   + V   W                          LA  
Sbjct: 26  KKLPKELLLRIFSFLDVVTLCRCAQVSRAWN------------------------VLALD 61

Query: 104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            +  Q + L   +  +E   VE I+  C   L+ L L     + D +L   A  C N+  
Sbjct: 62  GSNWQRIDLFDFQRDIEGRVVENISKRCGGFLRKLSLRGCLGVGDNALRTFAQNCRNIEV 121

Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE 222
           L+++GCT  +D     L  FC KL+ L+L  C  + T+ +L+A+   C  L+ LN+ WC+
Sbjct: 122 LSLNGCTKTTDATCTSLSKFCSKLRHLDLASCT-SITNMSLKALSEGCPLLEQLNISWCD 180

Query: 223 DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIY 282
            V   G+  L  GC  L++L L GC  + D+++  +   CP L +L L  C  ITD  + 
Sbjct: 181 QVTKDGIQALVRGCGGLKALFLKGCTQLEDEALKYIGAHCPELVTLNLQTCLQITDEGLI 240

Query: 283 SLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS 342
           ++ +   K                 LQSL  S C+ +T   + AL    P L        
Sbjct: 241 TICRGCHK-----------------LQSLCASGCSNITDAILNALGQNCPRLRI------ 277

Query: 343 LVMSGCLNLTSV 354
           L ++ C  LT V
Sbjct: 278 LEVARCSQLTDV 289

Substrate-recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Isoform 3 regulates neural transmission by binding and ubiquitinating RIMS1, a modulator of presynaptic plasticity.

Mus musculus (taxid: 10090)

>sp|Q8BH16|FBXL2_MOUSE F-box/LRR-repeat protein 2 OS=Mus musculus GN=Fbxl2 PE=1 SV=1

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 78/267 (29%), Positives = 125/267 (46%), Gaps = 13/267 (4%)

Query: 77  ICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
            C  L HL L+ C +  N+ +  ++     L+ L L     Q+    +EA+   C  L+ 
Sbjct: 128 FCSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSW-CDQITKEGIEALVRGCRGLKA 186

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
           L L    +L D +L  + + C  L  LN+  C+  +D  +  +C  C +L+ L L GC  
Sbjct: 187 LLLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGC-S 245

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
             TD +L A+G NC +LQ L    C  + D G   LA  C +L  +DL  CV ITD +++
Sbjct: 246 NLTDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLITDSTLV 305

Query: 257 ALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV-KNKPGIWE----------SMKGRYDE 305
            L+  CP L++L L +C  ITD  I  L+ S     +  + E          S++   + 
Sbjct: 306 QLSIHCPKLQALSLSHCELITDEGILHLSSSTCGHERLRVLELDNCLLVTDASLEHLENC 365

Query: 306 EGLQSLNISQCTALTPPAVQALCDTFP 332
            GL+ L +  C  +T   ++ +    P
Sbjct: 366 RGLERLELYDCQQVTRAGIKRMRAQLP 392

Probably recognizes and binds to some phosphorylated proteins and promotes their ubiquitination and degradation.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
255558466	373	F-box/LRR-repeat protein, putative [Rici	0.997	1.0	0.839	1e-179
224082382	363	predicted protein [Populus trichocarpa]	0.970	1.0	0.818	1e-174
224066761	358	predicted protein [Populus trichocarpa]	0.914	0.955	0.850	1e-170
302142727	428	unnamed protein product [Vitis vinifera]	0.983	0.859	0.775	1e-163
359492292	370	PREDICTED: F-box protein SKP2B-like [Vit	0.983	0.994	0.775	1e-163
449453019	376	PREDICTED: F-box protein SKP2A-like [Cuc	0.997	0.992	0.766	1e-163
18394987	360	F-box protein SKP2A [Arabidopsis thalian	0.954	0.991	0.749	1e-161
21554029	360	F-box protein AtFBL5 [Arabidopsis thalia	0.954	0.991	0.749	1e-161
312282179	367	unnamed protein product [Thellungiella h	0.973	0.991	0.750	1e-160
217073061	368	unknown [Medicago truncatula]	0.983	1.0	0.740	1e-159

>gi|255558466|ref|XP_002520258.1| F-box/LRR-repeat protein, putative [Ricinus communis] gi|223540477|gb|EEF42044.1| F-box/LRR-repeat protein, putative [Ricinus communis]

 Score =  632 bits (1630), Expect = e-179,   Method: Compositional matrix adjust.
 Identities = 314/374 (83%), Positives = 336/374 (89%), Gaps = 1/374 (0%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG    L SEDLN CFEK+MMAGA  +  G VKM+GVVITEWKDIPMELLLRI+SLVD+
Sbjct: 1   MVG-GGKLRSEDLNRCFEKLMMAGAAGNTEGRVKMEGVVITEWKDIPMELLLRIVSLVDD 59

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            T+I+ASGVCSGWRDAICLGLTHL LSWCKN+MNNLVL LAPK TKL+TLVLRQDKPQLE
Sbjct: 60  RTIIMASGVCSGWRDAICLGLTHLCLSWCKNHMNNLVLWLAPKFTKLETLVLRQDKPQLE 119

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIA  CHDL+DLDLSKSFKL+D SLYALAHGCPNLT+LNISGCTSFSD  L YL 
Sbjct: 120 DNAVEAIARYCHDLEDLDLSKSFKLTDCSLYALAHGCPNLTKLNISGCTSFSDGGLEYLT 179

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
           GFCRKLKILNLCGCVKAATD ALQAIGRNC+QLQSLNLGWCE+VGDVGVM+LAYGCPDLR
Sbjct: 180 GFCRKLKILNLCGCVKAATDRALQAIGRNCSQLQSLNLGWCENVGDVGVMSLAYGCPDLR 239

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
           +LDLCGCV ITDDSVIALA  C HLRSLGLYYCRNITDRA+YSL  S VKNKP +WES+K
Sbjct: 240 TLDLCGCVNITDDSVIALAYRCLHLRSLGLYYCRNITDRAMYSLVHSRVKNKPAMWESVK 299

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
           GR DEEGL+SLNISQCTALTPPAVQALCD FPALHTCSGRHSLVMSGCLNLTSVHC CA 
Sbjct: 300 GRCDEEGLRSLNISQCTALTPPAVQALCDCFPALHTCSGRHSLVMSGCLNLTSVHCACAV 359

Query: 361 QSHRTASSIPHPAH 374
           Q+HRT   IP+PAH
Sbjct: 360 QAHRTFRFIPNPAH 373

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224082382|ref|XP_002306672.1| predicted protein [Populus trichocarpa] gi|222856121|gb|EEE93668.1| predicted protein [Populus trichocarpa]

 Score =  618 bits (1593), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 306/374 (81%), Positives = 328/374 (87%), Gaps = 11/374 (2%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GE     SEDLNLCFEK+MM   G          G VITEWKDIP+ELLLRI+SLVD+
Sbjct: 1   MAGEG-KARSEDLNLCFEKLMMLAFG----------GAVITEWKDIPVELLLRIVSLVDD 49

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAIC+GLTHL LSWCKNNMNNLVLSLAPK TKLQTLVLRQDKPQLE
Sbjct: 50  RTVIMASGVCSGWRDAICMGLTHLCLSWCKNNMNNLVLSLAPKFTKLQTLVLRQDKPQLE 109

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D+AVE IA+ CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD  L YL 
Sbjct: 110 DHAVETIASYCHDLQDLDLSKSFKLSDLSLYALAHGCPNLTKLNISGCTAFSDDGLEYLT 169

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FC+KLK LNLCGCVK ATD ALQ IGRNC+QLQ+LNLGWCE+VGDVGVM+LAYGCPDLR
Sbjct: 170 EFCQKLKFLNLCGCVKGATDRALQGIGRNCSQLQTLNLGWCENVGDVGVMSLAYGCPDLR 229

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
           +LDLCGCVCITDDSVIALAN CPHLRSLGLYYCRNITDRA+YSL  + VKNK  +WESMK
Sbjct: 230 TLDLCGCVCITDDSVIALANRCPHLRSLGLYYCRNITDRAMYSLVHNRVKNKLSMWESMK 289

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
           GR DEEGL  LNISQCTALTPPAVQALCD+FPALHTCSGRHSLVMSGCLNLTSVHCVCA 
Sbjct: 290 GRCDEEGLSRLNISQCTALTPPAVQALCDSFPALHTCSGRHSLVMSGCLNLTSVHCVCAV 349

Query: 361 QSHRTASSIPHPAH 374
           Q+HR+ASS PHPAH
Sbjct: 350 QAHRSASSFPHPAH 363

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066761|ref|XP_002302202.1| predicted protein [Populus trichocarpa] gi|222843928|gb|EEE81475.1| predicted protein [Populus trichocarpa]

 Score =  602 bits (1552), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 291/342 (85%), Positives = 316/342 (92%)

Query: 33  VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNN 92
           V+++G+VITEWKDIPM+LLLRI+SLVD+ T+I+ASGVCSGWRDAIC GLTHL LSWCKNN
Sbjct: 17  VEIEGLVITEWKDIPMKLLLRIVSLVDDRTLIMASGVCSGWRDAICSGLTHLCLSWCKNN 76

Query: 93  MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152
           MNNLVLSLAPK TKLQTLVLRQDKPQLEDNAVE IA+ CHDLQDLDLSKSFKLSD SLYA
Sbjct: 77  MNNLVLSLAPKFTKLQTLVLRQDKPQLEDNAVETIASYCHDLQDLDLSKSFKLSDLSLYA 136

Query: 153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 212
           LAHG PNLT+LNISGCT+FSD +L YL  FCRKLKILNLCGCV  ATD ALQAIGRNC+Q
Sbjct: 137 LAHGFPNLTKLNISGCTAFSDVSLEYLTEFCRKLKILNLCGCVNGATDRALQAIGRNCSQ 196

Query: 213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 272
           LQSLNLGWCE+V DVGVM+LAYGCPD+R+LDLCGCVCITDDSVIALAN CPHLRSL LYY
Sbjct: 197 LQSLNLGWCENVSDVGVMSLAYGCPDIRTLDLCGCVCITDDSVIALANRCPHLRSLCLYY 256

Query: 273 CRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP 332
           CRNITDRA+YSL  + VKNKP +WESMKGRYDEEGL+SLNISQCTA+TPPAVQALCD+FP
Sbjct: 257 CRNITDRAMYSLVHNRVKNKPAMWESMKGRYDEEGLKSLNISQCTAITPPAVQALCDSFP 316

Query: 333 ALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHPAH 374
           ALHTCSGRHSLVMSGC NLTSVHC CA Q+H TASSIPHPAH
Sbjct: 317 ALHTCSGRHSLVMSGCWNLTSVHCACAVQAHHTASSIPHPAH 358

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302142727|emb|CBI19930.3| unnamed protein product [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/374 (77%), Positives = 324/374 (86%), Gaps = 6/374 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+      E+L  CFE+++M G G     G  +   VITEWKD+PMELLLRI++LVD+
Sbjct: 61  MVGQG----GEELEFCFERLVMGGDGRGGMDGGGV--GVITEWKDVPMELLLRIVALVDD 114

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK TKLQ L LRQDKPQLE
Sbjct: 115 RTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLE 174

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D AVE IAN CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD ALA+L 
Sbjct: 175 DKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 234

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCR+LKILNLCGC KAA++ ALQAIGRNC+QLQSLNLGWCEDV D GVM+LAYGCPDLR
Sbjct: 235 SFCRRLKILNLCGCGKAASNRALQAIGRNCSQLQSLNLGWCEDVSDAGVMSLAYGCPDLR 294

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
           +LDLCGCV ITD+SVIALAN C HLRSLGLY+C+NITD+A+YSLAQS VKNK  +WESMK
Sbjct: 295 ALDLCGCVHITDESVIALANRCLHLRSLGLYFCQNITDKAMYSLAQSRVKNKHEMWESMK 354

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
            RY EEGL +LNISQCTALTPPAVQA+CD+FPALHTC GRHSL++SGCL+LTSVHC C  
Sbjct: 355 SRYSEEGLMNLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACGV 414

Query: 361 QSHRTASSIPHPAH 374
           Q+HRTAS + HPAH
Sbjct: 415 QAHRTASQLSHPAH 428

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359492292|ref|XP_002268441.2| PREDICTED: F-box protein SKP2B-like [Vitis vinifera]

 Score =  581 bits (1497), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 290/374 (77%), Positives = 324/374 (86%), Gaps = 6/374 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+      E+L  CFE+++M G G     G  +   VITEWKD+PMELLLRI++LVD+
Sbjct: 3   MVGQG----GEELEFCFERLVMGGDGRGGMDGGGV--GVITEWKDVPMELLLRIVALVDD 56

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPK TKLQ L LRQDKPQLE
Sbjct: 57  RTVIMASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKFTKLQALTLRQDKPQLE 116

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           D AVE IAN CHDLQDLDLSKSFKLSD SLYALAHGCPNLT+LNISGCT+FSD ALA+L 
Sbjct: 117 DKAVEIIANYCHDLQDLDLSKSFKLSDSSLYALAHGCPNLTKLNISGCTAFSDAALAHLT 176

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCR+LKILNLCGC KAA++ ALQAIGRNC+QLQSLNLGWCEDV D GVM+LAYGCPDLR
Sbjct: 177 SFCRRLKILNLCGCGKAASNRALQAIGRNCSQLQSLNLGWCEDVSDAGVMSLAYGCPDLR 236

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
           +LDLCGCV ITD+SVIALAN C HLRSLGLY+C+NITD+A+YSLAQS VKNK  +WESMK
Sbjct: 237 ALDLCGCVHITDESVIALANRCLHLRSLGLYFCQNITDKAMYSLAQSRVKNKHEMWESMK 296

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
            RY EEGL +LNISQCTALTPPAVQA+CD+FPALHTC GRHSL++SGCL+LTSVHC C  
Sbjct: 297 SRYSEEGLMNLNISQCTALTPPAVQAVCDSFPALHTCPGRHSLIISGCLSLTSVHCACGV 356

Query: 361 QSHRTASSIPHPAH 374
           Q+HRTAS + HPAH
Sbjct: 357 QAHRTASQLSHPAH 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453019|ref|XP_004144256.1| PREDICTED: F-box protein SKP2A-like [Cucumis sativus] gi|449517068|ref|XP_004165568.1| PREDICTED: F-box protein SKP2A-like [Cucumis sativus]

 Score =  580 bits (1494), Expect = e-163,   Method: Compositional matrix adjust.
 Identities = 289/377 (76%), Positives = 324/377 (85%), Gaps = 4/377 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMM--AGAGADR-AGGVKMDGVVITEWKDIPMELLLRILSL 57
           MVG+  NL +EDLNLCFEK MM  AG G D  A GV+MDG V+  WKDIPMELLL+ILSL
Sbjct: 1   MVGK-ENLRTEDLNLCFEKPMMLVAGDGMDVGAKGVQMDGGVLAGWKDIPMELLLQILSL 59

Query: 58  VDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKP 117
           VD+ TVIVASGVC GWRDAIC GL HLSLSWC+ NMNNLVLSLAPK  +LQ L+LRQDKP
Sbjct: 60  VDDRTVIVASGVCRGWRDAICFGLAHLSLSWCQKNMNNLVLSLAPKFARLQNLILRQDKP 119

Query: 118 QLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALA 177
           QL D+AVE IA+ CHDLQ LDLSKSFKLSD SLYALAHGC +L RLNISGCT+FSD ALA
Sbjct: 120 QLGDDAVETIASYCHDLQVLDLSKSFKLSDLSLYALAHGCRDLKRLNISGCTAFSDTALA 179

Query: 178 YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP 237
           YL  +CRKLK+LNLCGCVKAA+D ALQAIG+ CN LQS+NLGWCE+V DVGVM+LAYGCP
Sbjct: 180 YLASYCRKLKVLNLCGCVKAASDTALQAIGQYCNHLQSVNLGWCENVTDVGVMSLAYGCP 239

Query: 238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWE 297
           DLR LDLCGCV ITDDSVIALAN CPHLRSLGLYYC+NITDRA+YSLA S +KNKP  W 
Sbjct: 240 DLRILDLCGCVLITDDSVIALANMCPHLRSLGLYYCQNITDRAMYSLAHSCIKNKPTKWG 299

Query: 298 SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV 357
           + KG+ D++GL++LNISQCTALTPPAVQA+CD+FPALHTCSGRHSL+MSGCLNL SVHC 
Sbjct: 300 TGKGKNDDDGLRTLNISQCTALTPPAVQAVCDSFPALHTCSGRHSLIMSGCLNLISVHCA 359

Query: 358 CAGQSHRTASSIPHPAH 374
           CA Q+HR A++  H AH
Sbjct: 360 CAVQAHRAATAFLHSAH 376

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|18394987|ref|NP_564139.1| F-box protein SKP2A [Arabidopsis thaliana] gi|75177240|sp|Q9LPL4.1|SKP2A_ARATH RecName: Full=F-box protein SKP2A; AltName: Full=FBL5-like protein; Short=AtFBL5; AltName: Full=SKP2-like protein 1; Short=AtSKP2;1 gi|9454572|gb|AAF87895.1|AC015447_5 Unknown protein [Arabidopsis thaliana] gi|16604366|gb|AAL24189.1| At1g21410/F24J8_17 [Arabidopsis thaliana] gi|19699206|gb|AAL90969.1| At1g21410/F24J8_17 [Arabidopsis thaliana] gi|332191979|gb|AEE30100.1| F-box protein SKP2A [Arabidopsis thaliana]

 Score =  575 bits (1482), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/375 (74%), Positives = 321/375 (85%), Gaps = 18/375 (4%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GEA    S +L+ CF+KM             KM+G+ I EWKDIP+ELL+RILSLVD+
Sbjct: 3   MGGEA----SMELDQCFQKM-------------KMEGISIKEWKDIPVELLMRILSLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
             VIVASGVC+GWRDAI  GLT L LSWC NNMN+LVLSL PK  KLQTL LRQDKPQLE
Sbjct: 46  RNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQ+LDLSKS K++DRSLYALAHGCP+LT+LN+SGCTSFSD A+AYL 
Sbjct: 106 DNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCRKLK+LNLCGCVKA TD AL+AIG NCNQ+QSLNLGWCE++ D GVM+LAYGCPDLR
Sbjct: 166 RFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLR 225

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM- 299
           +LDLCGCV ITD+SV+ALA+ C HLRSLGLYYCRNITDRA+YSLAQSGVKNKPG W+S+ 
Sbjct: 226 TLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKPGSWKSVK 285

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
           KG+YDEEGL+SLNISQCTALTP AVQA+CD+FPALHTCSGRHSLVMSGCLNLT+VHC C 
Sbjct: 286 KGKYDEEGLRSLNISQCTALTPSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACI 345

Query: 360 GQSHRTASSIPHPAH 374
            Q+HR  +++PHPAH
Sbjct: 346 LQAHRAHNAVPHPAH 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21554029|gb|AAM63110.1| F-box protein AtFBL5 [Arabidopsis thaliana]

 Score =  573 bits (1478), Expect = e-161,   Method: Compositional matrix adjust.
 Identities = 281/375 (74%), Positives = 320/375 (85%), Gaps = 18/375 (4%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           M GEA    S +L+ CF+KM             KM+G+ I EWKDIP+ELL+RILSLVD+
Sbjct: 3   MGGEA----SMELDQCFQKM-------------KMEGISIKEWKDIPVELLMRILSLVDD 45

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
             VIVASGVC+GWRDAI  GLT L LSWC NNMN+LVLSL PK  KLQTL LRQDKPQLE
Sbjct: 46  RNVIVASGVCTGWRDAISFGLTRLRLSWCNNNMNSLVLSLVPKFVKLQTLNLRQDKPQLE 105

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN CH+LQ+LDLSKS K++DRSLYALAHGCP+LT+LN+SGCTSFSD A+AYL 
Sbjct: 106 DNAVEAIANHCHELQELDLSKSLKITDRSLYALAHGCPDLTKLNLSGCTSFSDTAIAYLT 165

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCRKLK+LNLCGCVKA TD AL+AIG NCNQ+QSLNLGWCE++ D GVM+LAYGCPDLR
Sbjct: 166 RFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQMQSLNLGWCENISDDGVMSLAYGCPDLR 225

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM- 299
           +LDLCGCV ITD+SV+ALA+ C HLRSLGLYYCRNITDRAIYSLAQSGVKNKPG W+S+ 
Sbjct: 226 TLDLCGCVLITDESVVALADWCVHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGSWKSVK 285

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
           KG+YDEEGL+SLNISQCTALT  AVQA+CD+FPALHTCSGRHSLVMSGCLNLT+VHC C 
Sbjct: 286 KGKYDEEGLRSLNISQCTALTSSAVQAVCDSFPALHTCSGRHSLVMSGCLNLTTVHCACI 345

Query: 360 GQSHRTASSIPHPAH 374
            Q+HR  +++PHPAH
Sbjct: 346 LQAHRAHNAVPHPAH 360

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|312282179|dbj|BAJ33955.1| unnamed protein product [Thellungiella halophila]

 Score =  570 bits (1468), Expect = e-160,   Method: Compositional matrix adjust.
 Identities = 283/377 (75%), Positives = 318/377 (84%), Gaps = 13/377 (3%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MV       + +L+ CFEKM            +KM+G++ITEWKDIP+ELL+RIL+LVD+
Sbjct: 1   MVMSEGGAGTRELSRCFEKM----------KEMKMEGIMITEWKDIPLELLMRILNLVDD 50

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI+ASGVCSGWRDAI  GLT LSLSWCK NMN LVLSLAPK  KLQTLVLRQDKPQLE
Sbjct: 51  RTVIIASGVCSGWRDAISFGLTRLSLSWCKKNMNGLVLSLAPKFVKLQTLVLRQDKPQLE 110

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DNAVEAIAN C +LQDLDLSKS KL+D SLY+LA GC NLT+LN+SGCTSFSD ALAYL 
Sbjct: 111 DNAVEAIANHCPELQDLDLSKSLKLTDCSLYSLARGCTNLTKLNLSGCTSFSDTALAYLT 170

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
            FCRKLKILNLCGCV+A +D ALQAIG NCNQ+QSLNLGWCE++ D GVMNLAYGCPDLR
Sbjct: 171 RFCRKLKILNLCGCVEAVSDNALQAIGENCNQMQSLNLGWCENISDDGVMNLAYGCPDLR 230

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM- 299
           SLDLCGCV ITD+SV+ALAN C HLRSLGLYYCRNITDRA+YSLAQSGVKNK  +W S+ 
Sbjct: 231 SLDLCGCVLITDESVVALANRCVHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRSVK 290

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
           KG++DE+GL+SLNISQCT LTP AVQA+CDTFPALHTCSGRHSLVMSGCLNLTSVHC C 
Sbjct: 291 KGKFDEQGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLTSVHCACI 350

Query: 360 GQSHR--TASSIPHPAH 374
            Q+HR  T ++ PHPAH
Sbjct: 351 LQAHRAHTHTAFPHPAH 367

Source: Thellungiella halophila

Species: Eutrema halophilum

Genus: Eutrema

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217073061|gb|ACJ84890.1| unknown [Medicago truncatula]

 Score =  568 bits (1463), Expect = e-159,   Method: Compositional matrix adjust.
 Identities = 277/374 (74%), Positives = 321/374 (85%), Gaps = 6/374 (1%)

Query: 1   MVGEATNLSSEDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIPMELLLRILSLVDE 60
           MVG+  NL +EDLNL FE +MM  AG ++ G +K+   VITEWKDIP+ELL++ILSLVD+
Sbjct: 1   MVGK-DNLKTEDLNLFFENLMMV-AGGEKGGNMKVG--VITEWKDIPVELLMQILSLVDD 56

Query: 61  PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
            TVI  SGVC GWRD+I  GL  LSLSWC  NMNNLVLSL PK  KLQTL+LRQDKPQL+
Sbjct: 57  QTVIRVSGVCRGWRDSIYFGLARLSLSWCNKNMNNLVLSLVPKFAKLQTLILRQDKPQLD 116

Query: 121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
           DN V  IAN CHDLQ LDLSKSFKL+DRSLYA+AHGC +LT+LNISGC++FSD+ALAYL 
Sbjct: 117 DNVVGTIANFCHDLQILDLSKSFKLTDRSLYAIAHGCRDLTKLNISGCSAFSDNALAYLA 176

Query: 181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
           GFCRKLK+LNLCGCV+AA+D ALQAIG  CNQLQSLNLGWC+ VGDVGVM+LAYGCPDLR
Sbjct: 177 GFCRKLKVLNLCGCVRAASDTALQAIGHYCNQLQSLNLGWCDKVGDVGVMSLAYGCPDLR 236

Query: 241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
           ++DLCGCV ITDDSVIALANGCPHLRSLGLY+C+NITD A+YSLAQS VKN+  +W S+K
Sbjct: 237 TVDLCGCVYITDDSVIALANGCPHLRSLGLYFCKNITDNAMYSLAQSKVKNR--MWGSVK 294

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
           G  DE+GL++LNISQCT+LTP AVQA+CD+ PALHTCSGRHSL+MSGCLNLT VHC CAG
Sbjct: 295 GGNDEDGLRTLNISQCTSLTPSAVQAVCDSSPALHTCSGRHSLIMSGCLNLTEVHCACAG 354

Query: 361 QSHRTASSIPHPAH 374
            +HR  ++ PHPAH
Sbjct: 355 HAHRAMNAFPHPAH 368

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2027082	360	SKP2A [Arabidopsis thaliana (t	0.914	0.95	0.790	2e-152
TAIR|locus:2025222	360	SKP2B "AT1G77000" [Arabidopsis	0.959	0.997	0.736	1e-148
UNIPROTKB|A6H779	423	FBXL2 "F-box/LRR-repeat protei	0.548	0.484	0.371	5e-28
UNIPROTKB|F1PWK1	422	FBXL2 "Uncharacterized protein	0.548	0.485	0.352	1.3e-27
UNIPROTKB|Q9UKC9	423	FBXL2 "F-box/LRR-repeat protei	0.548	0.484	0.352	1.7e-27
UNIPROTKB|Q5R3Z8	423	FBXL2 "F-box/LRR-repeat protei	0.548	0.484	0.352	1.7e-27
RGD|1562243	422	Fbxl2 "F-box and leucine-rich	0.556	0.492	0.342	2.8e-27
UNIPROTKB|F1NHD2	423	FBXL2 "Uncharacterized protein	0.556	0.491	0.342	9.4e-27
MGI|MGI:1919429	423	Fbxl2 "F-box and leucine-rich	0.556	0.491	0.333	9.4e-27
TAIR|locus:2166978	405	AT5G23340 [Arabidopsis thalian	0.716	0.661	0.303	1.5e-26

TAIR|locus:2027082 SKP2A [Arabidopsis thaliana (taxid:3702)]

 Score = 1487 (528.5 bits), Expect = 2.0e-152, P = 2.0e-152
 Identities = 271/343 (79%), Positives = 309/343 (90%)

Query:    33 VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNN 92
             +KM+G+ I EWKDIP+ELL+RILSLVD+  VIVASGVC+GWRDAI  GLT L LSWC NN
Sbjct:    18 MKMEGISIKEWKDIPVELLMRILSLVDDRNVIVASGVCTGWRDAISFGLTRLRLSWCNNN 77

Query:    93 MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152
             MN+LVLSL PK  KLQTL LRQDKPQLEDNAVEAIAN CH+LQ+LDLSKS K++DRSLYA
Sbjct:    78 MNSLVLSLVPKFVKLQTLNLRQDKPQLEDNAVEAIANHCHELQELDLSKSLKITDRSLYA 137

Query:   153 LAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ 212
             LAHGCP+LT+LN+SGCTSFSD A+AYL  FCRKLK+LNLCGCVKA TD AL+AIG NCNQ
Sbjct:   138 LAHGCPDLTKLNLSGCTSFSDTAIAYLTRFCRKLKVLNLCGCVKAVTDNALEAIGNNCNQ 197

Query:   213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYY 272
             +QSLNLGWCE++ D GVM+LAYGCPDLR+LDLCGCV ITD+SV+ALA+ C HLRSLGLYY
Sbjct:   198 MQSLNLGWCENISDDGVMSLAYGCPDLRTLDLCGCVLITDESVVALADWCVHLRSLGLYY 257

Query:   273 CRNITDRAIYSLAQSGVKNKPGIWESMK-GRYDEEGLQSLNISQCTALTPPAVQALCDTF 331
             CRNITDRA+YSLAQSGVKNKPG W+S+K G+YDEEGL+SLNISQCTALTP AVQA+CD+F
Sbjct:   258 CRNITDRAMYSLAQSGVKNKPGSWKSVKKGKYDEEGLRSLNISQCTALTPSAVQAVCDSF 317

Query:   332 PALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHPAH 374
             PALHTCSGRHSLVMSGCLNLT+VHC C  Q+HR  +++PHPAH
Sbjct:   318 PALHTCSGRHSLVMSGCLNLTTVHCACILQAHRAHNAVPHPAH 360

GO:0005737 "cytoplasm" evidence=ISM

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IDA;IPI

GO:0031146 "SCF-dependent proteasomal ubiquitin-dependent protein catabolic process" evidence=IDA;IPI

GO:0005634 "nucleus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0051781 "positive regulation of cell division" evidence=IMP

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0016567 "protein ubiquitination" evidence=IDA

GO:0071365 "cellular response to auxin stimulus" evidence=IDA

GO:0045892 "negative regulation of transcription, DNA-dependent" evidence=RCA

TAIR|locus:2025222 SKP2B "AT1G77000" [Arabidopsis thaliana (taxid:3702)]

 Score = 1452 (516.2 bits), Expect = 1.0e-148, P = 1.0e-148
 Identities = 276/375 (73%), Positives = 317/375 (84%)

Query:     1 MVGEATNLSSEDLNLCFEKXXXXXXXXXXXXXVKMDGVVITEWKDIPMELLLRILSLVDE 60
             MV E    + ++LNLCFE              +KM+GV+I+EWKDIP+ELL++IL+LVD+
Sbjct:     1 MVSEGA--TRKELNLCFEN-------------MKMEGVLISEWKDIPVELLMKILNLVDD 45

Query:    61 PTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLE 120
              TVI+AS +CSGWRDA+ LGLT LSLSWCK NMN+LVLSLAPK  KLQTLVLRQDKPQLE
Sbjct:    46 RTVIIASCICSGWRDAVSLGLTRLSLSWCKKNMNSLVLSLAPKFVKLQTLVLRQDKPQLE 105

Query:   121 DNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC 180
             DNAVEAIAN CH+LQDLDLSKS K++D SLY+LA GC NLT+LN+SGCTSFSD ALA+L 
Sbjct:   106 DNAVEAIANHCHELQDLDLSKSSKITDHSLYSLARGCTNLTKLNLSGCTSFSDTALAHLT 165

Query:   181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
              FCRKLKILNLCGCV+A +D  LQAIG NCNQLQSLNLGWCE++ D GVM+LAYGCPDLR
Sbjct:   166 RFCRKLKILNLCGCVEAVSDNTLQAIGENCNQLQSLNLGWCENISDDGVMSLAYGCPDLR 225

Query:   241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK 300
             +LDLC CV ITD+SV+ALAN C HLRSLGLYYCRNITDRA+YSLAQSGVKNK  +W ++K
Sbjct:   226 TLDLCSCVLITDESVVALANRCIHLRSLGLYYCRNITDRAMYSLAQSGVKNKHEMWRAVK 285

Query:   301 -GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCA 359
              G++DEEGL+SLNISQCT LTP AVQA+CDTFPALHTCSGRHSLVMSGCLNL SVHC C 
Sbjct:   286 KGKFDEEGLRSLNISQCTYLTPSAVQAVCDTFPALHTCSGRHSLVMSGCLNLQSVHCACI 345

Query:   360 GQSHRTASSIPHPAH 374
              Q+HRT +  PHPAH
Sbjct:   346 LQAHRTHTVYPHPAH 360

GO:0004842 "ubiquitin-protein ligase activity" evidence=ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=TAS

GO:0010286 "heat acclimation" evidence=IEP;RCA

GO:0051603 "proteolysis involved in cellular protein catabolic process" evidence=IMP

GO:1901332 "negative regulation of lateral root development" evidence=IMP

UNIPROTKB|A6H779 FBXL2 "F-box/LRR-repeat protein 2" [Bos taurus (taxid:9913)]

 Score = 313 (115.2 bits), Expect = 5.0e-28, P = 5.0e-28
 Identities = 78/210 (37%), Positives = 111/210 (52%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + V +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRHLEYLNLSWCDQITKDGVEALVRGCRGLRALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
             +L    +++D  +  L  GCP L  L +SGC S +D +L  L   C +L+IL    C   
Sbjct:   214 NLQSCSRVTDDGVVQLCRGCPRLQALCLSGCGSLTDASLTALALNCPRLQILEAARC-SH 272

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD     + RNC+ L+ ++L  C  + D  +  L+  CP L++L L  C  ITDD ++ 
Sbjct:   273 LTDAGFTLLARNCHDLEKMDLEECILITDRTLTQLSIHCPKLQALSLSHCELITDDGILH 332

Query:   258 LANG-CPH--LRSLGLYYCRNITDRAIYSL 284
             L+N  C H  LR L L  C  ITD A+  L
Sbjct:   333 LSNSPCGHERLRVLELDNCLLITDVALEHL 362

GO:0016020 "membrane" evidence=ISS

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0005516 "calmodulin binding" evidence=IEA

UNIPROTKB|F1PWK1 FBXL2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 309 (113.8 bits), Expect = 1.3e-27, P = 1.3e-27
 Identities = 74/210 (35%), Positives = 112/210 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   154 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 212

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C   
Sbjct:   213 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALALNCPRLQILEAARC-SH 271

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD     + RNC+ L+ ++L  C  + D  ++ L+  CP L++L L  C  ITDD ++ 
Sbjct:   272 LTDAGFTLLARNCHDLEKMDLEECILITDSTLIQLSVHCPKLQALSLSHCELITDDGILH 331

Query:   258 LANG-CPH--LRSLGLYYCRNITDRAIYSL 284
             L+N  C H  LR L L  C  ITD A+  L
Sbjct:   332 LSNSTCGHERLRVLELDNCLLITDVALEHL 361

GO:0016020 "membrane" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

UNIPROTKB|Q9UKC9 FBXL2 "F-box/LRR-repeat protein 2" [Homo sapiens (taxid:9606)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 74/210 (35%), Positives = 113/210 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C   
Sbjct:   214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC-SH 272

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD     + RNC++L+ ++L  C  + D  ++ L+  CP L++L L  C  ITDD ++ 
Sbjct:   273 LTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILH 332

Query:   258 LANG-CPH--LRSLGLYYCRNITDRAIYSL 284
             L+N  C H  LR L L  C  ITD A+  L
Sbjct:   333 LSNSTCGHERLRVLELDNCLLITDVALEHL 362

GO:0005516 "calmodulin binding" evidence=IEA

GO:0019048 "virus-host interaction" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0016020 "membrane" evidence=IDA

GO:0005737 "cytoplasm" evidence=TAS

GO:0006464 "cellular protein modification process" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

UNIPROTKB|Q5R3Z8 FBXL2 "F-box/LRR-repeat protein 2" [Pongo abelii (taxid:9601)]

 Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
 Identities = 74/210 (35%), Positives = 113/210 (53%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L +L+LSWC     + + +L      L+ L+LR    QLED A++ I N CH+L  L
Sbjct:   155 CRNLEYLNLSWCDQITKDGIEALVRGCRGLKALLLR-GCTQLEDEALKHIQNYCHELVSL 213

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
             +L    +++D  +  +  GC  L  L +SGC++ +D +L  L   C +L+IL    C   
Sbjct:   214 NLQSCSRITDEGVVQICRGCHRLQALCLSGCSNLTDASLTALGLNCPRLQILEAARC-SH 272

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD     + RNC++L+ ++L  C  + D  ++ L+  CP L++L L  C  ITDD ++ 
Sbjct:   273 LTDAGFTLLARNCHELEKMDLEECILITDSTLIQLSIHCPKLQALSLSHCELITDDGILH 332

Query:   258 LANG-CPH--LRSLGLYYCRNITDRAIYSL 284
             L+N  C H  LR L L  C  ITD A+  L
Sbjct:   333 LSNSTCGHERLRVLELDNCLLITDVALEHL 362

GO:0016020 "membrane" evidence=ISS

RGD|1562243 Fbxl2 "F-box and leucine-rich repeat protein 2" [Rattus norvegicus (taxid:10116)]

 Score = 306 (112.8 bits), Expect = 2.8e-27, P = 2.8e-27
 Identities = 72/210 (34%), Positives = 106/210 (50%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L HL L+ C +  N+ +  ++     L+ L L     Q+    +EA+   C  L+ L
Sbjct:   128 CSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCD-QITKEGIEALVRGCRGLKAL 186

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
              L    +L D +L  + + C  L  LN+  C+  +D  +  +C  C +L+ L L GC   
Sbjct:   187 LLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNL 246

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD +L A+G NC +LQ L    C  + D G   LA  C DL  +DL  CV ITD ++I 
Sbjct:   247 -TDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHDLEKMDLEECVLITDSTLIQ 305

Query:   258 LANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
             L+  CP L++L L +C  ITD  I  L+ S
Sbjct:   306 LSIHCPKLQALSLSHCELITDEGILHLSSS 335

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA;ISO

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA;ISO

GO:0006513 "protein monoubiquitination" evidence=IEA;ISO

GO:0016020 "membrane" evidence=IEA;ISO

UNIPROTKB|F1NHD2 FBXL2 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 72/210 (34%), Positives = 106/210 (50%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L HL L+ C    N+ +  L+     L+ L L     Q+  + +EA+   C  L+ L
Sbjct:   129 CSKLKHLDLTSCVAITNSSLKGLSEGCRNLEHLNLSWCD-QITKDGIEALVKGCSGLKAL 187

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
              L    +L D +L  + + C  L  LN+  CT  SD  +  +C  C +L+ L + GC   
Sbjct:   188 FLRGCTQLEDEALKHIQNHCHELAILNLQSCTQISDEGIVKICRGCHRLQSLCVSGCCNL 247

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD +L A+G NC +L+ L    C  + D G   LA  C +L  +DL  CV ITD ++I 
Sbjct:   248 -TDASLTALGLNCPRLKILEAARCSQLTDAGFTLLARNCHELEKMDLEECVLITDSTLIQ 306

Query:   258 LANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
             L+  CP L++L L +C  ITD  I  L+ S
Sbjct:   307 LSIHCPKLQALSLSHCELITDDGILHLSNS 336

GO:0004842 "ubiquitin-protein ligase activity" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IEA

GO:0006513 "protein monoubiquitination" evidence=IEA

GO:0016020 "membrane" evidence=IEA

MGI|MGI:1919429 Fbxl2 "F-box and leucine-rich repeat protein 2" [Mus musculus (taxid:10090)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 70/210 (33%), Positives = 106/210 (50%)

Query:    78 CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
             C  L HL L+ C +  N+ +  ++     L+ L L     Q+    +EA+   C  L+ L
Sbjct:   129 CSKLKHLDLTSCVSVTNSSLKGISEGCRNLEYLNLSWCD-QITKEGIEALVRGCRGLKAL 187

Query:   138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
              L    +L D +L  + + C  L  LN+  C+  +D  +  +C  C +L+ L L GC   
Sbjct:   188 LLRGCTQLEDEALKHIQNHCHELVSLNLQSCSRITDDGVVQICRGCHRLQALCLSGCSNL 247

Query:   198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIA 257
              TD +L A+G NC +LQ L    C  + D G   LA  C +L  +DL  CV ITD +++ 
Sbjct:   248 -TDASLTALGLNCPRLQVLEAARCSHLTDAGFTLLARNCHELEKMDLEECVLITDSTLVQ 306

Query:   258 LANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
             L+  CP L++L L +C  ITD  I  L+ S
Sbjct:   307 LSIHCPKLQALSLSHCELITDEGILHLSSS 336

GO:0004842 "ubiquitin-protein ligase activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005516 "calmodulin binding" evidence=IEA

GO:0006511 "ubiquitin-dependent protein catabolic process" evidence=IMP

GO:0006513 "protein monoubiquitination" evidence=IGI;IMP

GO:0016020 "membrane" evidence=ISO

TAIR|locus:2166978 AT5G23340 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 88/290 (30%), Positives = 147/290 (50%)

Query:    84 LSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSF 143
             L+L  CK   +  + S+   L+ LQ L +   + +L D  + A+A  CHDL+ L L+   
Sbjct:   103 LNLHNCKGITDTGLASIGRCLSLLQFLDVSYCR-KLSDKGLSAVAEGCHDLRALHLAGCR 161

Query:   144 KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYAL 203
              ++D SL +L+  C +L  L + GCT+ +D  LA L   CRK+K L++  C     D  +
Sbjct:   162 FITDESLKSLSERCRDLEALGLQGCTNITDSGLADLVKGCRKIKSLDINKCSNVG-DAGV 220

Query:   204 QAIGRNC-NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC 262
              ++ + C + L++L L  C  VG+  + +LA  C +L +L + GC  I+D+S++ LA+ C
Sbjct:   221 SSVAKACASSLKTLKLLDCYKVGNESISSLAQFCKNLETLIIGGCRDISDESIMLLADSC 280

Query:   263 PH-LRSLGLYYCRNITDRAIYSLAQSGVKNKP----GIWESMK-------GRYDEEGLQS 310
                L++L + +C NI+D ++  + +   KN      G  E +        G  D  GL+ 
Sbjct:   281 KDSLKNLRMDWCLNISDSSLSCILKQ-CKNLEALDIGCCEEVTDTAFRDLGSDDVLGLKV 339

Query:   311 LNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAG 360
             L +S CT +T   +  L D       CS    + +    ++T V C  AG
Sbjct:   340 LKVSNCTKITVTGIGKLLDK------CSSLEYIDVRSLPHVTEVRCSEAG 383

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LPL4	SKP2A_ARATH	No assigned EC number	0.7493	0.9545	0.9916	yes	no
O49286	SKP2B_ARATH	No assigned EC number	0.7386	0.9598	0.9972	no	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: estExt_fgenesh4_pg.C_LG_V1038 hypothetical protein (364 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	7e-24
cd09293	226	cd09293, AMN1, Antagonist of mitotic exit network	2e-11
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	2e-05
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	2e-04
pfam12937	47	pfam12937, F-box-like, F-box-like	0.001
smart00367	26	smart00367, LRR_CC, Leucine-rich repeat - CC (cyst	0.002

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 98.2 bits (245), Expect = 7e-24
 Identities = 58/155 (37%), Positives = 79/155 (50%), Gaps = 6/155 (3%)

Query: 130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKIL 189
           +C+ L+ L L  S  + D  L ALA  CPNL  L++  C + +D  +  L   C KL+ +
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 190 NLCGCVK--AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC-PDLRSLDLCG 246
           NL         TD +L A+G+NC  LQ++    C DV D GV  LA GC   L  L L  
Sbjct: 110 NLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGC-DVTDKGVWELASGCSKSLERLSLNN 168

Query: 247 CVCITDDSVIAL--ANGCPHLRSLGLYYCRNITDR 279
           C  +TD S+ A+  +N  P+L  L    C  ITD 
Sbjct: 169 CRNLTDQSIPAILASNYFPNLSVLEFRGCPLITDF 203

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|187754 cd09293, AMN1, Antagonist of mitotic exit network protein 1

 Score = 62.7 bits (153), Expect = 2e-11
 Identities = 44/143 (30%), Positives = 72/143 (50%), Gaps = 18/143 (12%)

Query: 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSL 268
           NCN+L+ L L   + + D G++ LA  CP+L+ LDL  C  ITD  ++ALA  CP L+++
Sbjct: 50  NCNKLKKLILPGSKLIDDEGLIALAQSCPNLQVLDLRACENITDSGIVALATNCPKLQTI 109

Query: 269 GL---YYCRNITDRAIYSLAQSGVKNKP-----------GIWESMKGRYDEEGLQSLNIS 314
            L        ITD ++ +L ++    +            G+WE   G      L+ L+++
Sbjct: 110 NLGRHRNGHLITDVSLSALGKNCTFLQTVGFAGCDVTDKGVWELASGCSKS--LERLSLN 167

Query: 315 QCTALTPPAVQAL--CDTFPALH 335
            C  LT  ++ A+   + FP L 
Sbjct: 168 NCRNLTDQSIPAILASNYFPNLS 190

Amn1 has been functionally characterized in Saccharomyces cerevisiae as a component of the Antagonist of MEN pathway (AMEN). The AMEN network is activated by MEN (mitotic exit network) via an active Cdc14, and in turn switches off MEN. Amn1 constitutes one of the alternative mechanisms by which MEN may be disrupted. Specifically, Amn1 binds Tem1 (Termination of M-phase, a GTPase that belongs to the RAS superfamily), and disrupts its association with Cdc15, the primary downstream target. Amn1 is a leucine-rich repeat (LRR) protein, with 12 repeats in the S. cerevisiae ortholog. As a negative regulator of the signal transduction pathway MEN, overexpression of AMN1 slows the growth of wild type cells. The function of the vertebrate members of this family has not been determined experimentally, they have fewer LRRs that determine the extent of this model. Length = 226

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 13/26 (50%), Positives = 17/26 (65%)

Query: 262 CPHLRSLGLYYCRNITDRAIYSLAQS 287
           CP+LR L L  C NITD  + +LA+ 
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALAKG 26

Length = 26

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 37.8 bits (89), Expect = 2e-04
 Identities = 16/26 (61%), Positives = 19/26 (73%)

Query: 236 CPDLRSLDLCGCVCITDDSVIALANG 261
           CP+LR LDL GC  ITD+ + ALA G
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALAKG 26

Length = 26

>gnl|CDD|221867 pfam12937, F-box-like, F-box-like

 Score = 35.9 bits (84), Expect = 0.001
 Identities = 12/36 (33%), Positives = 20/36 (55%)

Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
            D+P E+LL+I S +D   ++  + VC  WR+   
Sbjct: 1  LSDLPDEILLQIFSYLDPRDLLRLALVCRRWRELAS 36

This is an F-box-like family. Length = 47

>gnl|CDD|197685 smart00367, LRR_CC, Leucine-rich repeat - CC (cysteine-containing) subfamily

 Score = 35.1 bits (82), Expect = 0.002
 Identities = 12/24 (50%), Positives = 16/24 (66%)

Query: 157 CPNLTRLNISGCTSFSDHALAYLC 180
           CPNL  L++SGCT+ +D  L  L 
Sbjct: 1   CPNLRELDLSGCTNITDEGLQALA 24

Length = 26

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
KOG4341	483	consensus F-box protein containing LRR [General fu	99.96
KOG4341	483	consensus F-box protein containing LRR [General fu	99.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.95
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	99.86
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.57
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.52
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.51
KOG1947	482	consensus Leucine rich repeat proteins, some prote	99.5
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.26
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.23
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.22
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	99.15
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.15
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.08
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.88
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	98.88
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	98.87
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.75
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	98.74
PLN03210	1153	Resistant to P. syringae 6; Provisional	98.69
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.53
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.52
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.47
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	98.46
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	98.28
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.25
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.23
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	98.23
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	98.15
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.05
KOG3864	221	consensus Uncharacterized conserved protein [Funct	98.02
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	97.94
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.92
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	97.89
KOG4237	498	consensus Extracellular matrix protein slit, conta	97.66
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	97.64
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.5
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.3
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	97.25
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	97.24
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	97.09
PF12937	47	F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B	96.97
KOG4237	498	consensus Extracellular matrix protein slit, conta	96.92
KOG0472	565	consensus Leucine-rich repeat protein [Function un	96.9
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	96.9
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.89
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	96.69
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	96.64
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.51
smart00367	26	LRR_CC Leucine-rich repeat - CC (cysteine-containi	96.47
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	96.36
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	96.24
KOG4308	478	consensus LRR-containing protein [Function unknown	95.89
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.75
KOG2123	388	consensus Uncharacterized conserved protein [Funct	95.74
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	95.67
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	95.58
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	95.57
KOG0617	264	consensus Ras suppressor protein (contains leucine	95.45
PLN03150	623	hypothetical protein; Provisional	95.3
PF00646	48	F-box: F-box domain; InterPro: IPR001810 The F-box	95.22
KOG4308	478	consensus LRR-containing protein [Function unknown	95.13
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	95.1
smart00256	41	FBOX A Receptor for Ubiquitination Targets.	94.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	94.91
PLN03150	623	hypothetical protein; Provisional	94.89
KOG0472	565	consensus Leucine-rich repeat protein [Function un	94.68
PLN03215	373	ascorbic acid mannose pathway regulator 1; Provisi	94.41
KOG2997	366	consensus F-box protein FBX9 [General function pre	94.23
KOG0617	264	consensus Ras suppressor protein (contains leucine	93.9
PRK15386	426	type III secretion protein GogB; Provisional	93.79
PRK15386	426	type III secretion protein GogB; Provisional	93.62
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	93.39
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	93.37
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	93.1
KOG0281	499	consensus Beta-TrCP (transducin repeats containing	92.99
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	92.67
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	91.1
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	89.31
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	89.0
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	86.02
smart00368	28	LRR_RI Leucine rich repeat, ribonuclease inhibitor	85.41
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	84.53
KOG3763	585	consensus mRNA export factor TAP/MEX67 [RNA proces	83.76

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.96  E-value=1.3e-30  Score=225.03  Aligned_cols=286  Identities=28%  Similarity=0.497  Sum_probs=219.2

Q ss_pred             CCCCHHHHHHHhcCCCccchhhhcccchhHHHhh------------------------------hccCceeecccccccc
Q 017279           44 KDIPMELLLRILSLVDEPTVIVASGVCSGWRDAI------------------------------CLGLTHLSLSWCKNNM   93 (374)
Q Consensus        44 ~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~------------------------------~~~l~~L~l~~~~~~~   93 (374)
                      ..||.|++.+||++|+.+.+++++++|+.|...+                              +..++.+.+.++....
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~rDv~g~VV~~~~~Rcgg~lk~LSlrG~r~v~  152 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQRDVDGGVVENMISRCGGFLKELSLRGCRAVG  152 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchhcCCCcceehHhhhhccccccccccccccCC
Confidence            3455555555555555555555555555555433                              2347888888888888


Q ss_pred             hHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH
Q 017279           94 NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD  173 (374)
Q Consensus        94 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  173 (374)
                      ...+..+...||++++|++. .+..+++..+..+.++|++|++|++-.|..+++..++.++..|++|++|++++|+.++.
T Consensus       153 ~sslrt~~~~CpnIehL~l~-gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~  231 (483)
T KOG4341|consen  153 DSSLRTFASNCPNIEHLALY-GCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISG  231 (483)
T ss_pred             cchhhHHhhhCCchhhhhhh-cceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhc
Confidence            88888888999999999998 88899999999999999999999999988999999999999999999999999998888


Q ss_pred             HHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279          174 HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD  253 (374)
Q Consensus       174 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~  253 (374)
                      .++..+...+..++.+.+.+|.. ...+.+..+...++.+-++++..|..++|+++..+..+|..|+.|..++|..+++.
T Consensus       232 ~gv~~~~rG~~~l~~~~~kGC~e-~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~  310 (483)
T KOG4341|consen  232 NGVQALQRGCKELEKLSLKGCLE-LELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDE  310 (483)
T ss_pred             CcchHHhccchhhhhhhhccccc-ccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCCCchH
Confidence            88888887888888888888875 67777777887888888888888888888888888888888888988888888888


Q ss_pred             HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279          254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA  333 (374)
Q Consensus       254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  333 (374)
                      .+..+.+++++|+.|-++.|.++++.++..++..+                 +.|+.+++-+|..+++..+..+.     
T Consensus       311 ~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~-----------------~~Le~l~~e~~~~~~d~tL~sls-----  368 (483)
T KOG4341|consen  311 VLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNC-----------------PHLERLDLEECGLITDGTLASLS-----  368 (483)
T ss_pred             HHHHHhcCCCceEEEeccccchhhhhhhhhhhcCC-----------------hhhhhhcccccceehhhhHhhhc-----
Confidence            88888888888999999888888888888888776                 44555555444444444333333     


Q ss_pred             ccCCCCCceEEecCCcccccc
Q 017279          334 LHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       334 l~~~~~L~~L~ls~C~~l~~~  354 (374)
                       .+||.||+|.++.|..+|.+
T Consensus       369 -~~C~~lr~lslshce~itD~  388 (483)
T KOG4341|consen  369 -RNCPRLRVLSLSHCELITDE  388 (483)
T ss_pred             -cCCchhccCChhhhhhhhhh
Confidence             34444455555555555444

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=99.95  E-value=1.1e-28  Score=213.31  Aligned_cols=332  Identities=29%  Similarity=0.457  Sum_probs=238.3

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCCCHHHHHHHhcCCCccchhhhcccchh-----------
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSG-----------   72 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~-----------   72 (374)
                      .+||+|+...+||+||..++.++|++|  |+.-+.+...|+....--...   +++-.-...+..-|..           
T Consensus        73 ~~LPpEl~lkvFS~LDtksl~r~a~~c~~~n~~AlD~~~~q~idL~t~~r---Dv~g~VV~~~~~Rcgg~lk~LSlrG~r  149 (483)
T KOG4341|consen   73 RSLPPELLLKVFSMLDTKSLCRAAQCCTMWNKLALDGSCWQHIDLFTFQR---DVDGGVVENMISRCGGFLKELSLRGCR  149 (483)
T ss_pred             ccCCHHHHHHHHHHHhHHHHHHHHHHHHHhhhhhhccccceeeehhcchh---cCCCcceehHhhhhccccccccccccc
Confidence            499999999999999999999999999  666666666776543211110   0111111111111111           


Q ss_pred             --------HHHhhhccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCC
Q 017279           73 --------WRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFK  144 (374)
Q Consensus        73 --------w~~~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  144 (374)
                              -....++++.+|.+.++...++.....+.+.|++|+++++. .|..+++..+..+...|++|++|+++.|..
T Consensus       150 ~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~-~c~~iT~~~Lk~la~gC~kL~~lNlSwc~q  228 (483)
T KOG4341|consen  150 AVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLH-SCSSITDVSLKYLAEGCRKLKYLNLSWCPQ  228 (483)
T ss_pred             cCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhc-ccchhHHHHHHHHHHhhhhHHHhhhccCch
Confidence                    11123566888888888888887788888888888888888 677888888888888888888888888877


Q ss_pred             CCHHHHHHHHhcCCCCcEEeec--------------------------CCCCCCHHHHHHHHhcCCCCcEEEcCCCccCc
Q 017279          145 LSDRSLYALAHGCPNLTRLNIS--------------------------GCTSFSDHALAYLCGFCRKLKILNLCGCVKAA  198 (374)
Q Consensus       145 ~~~~~~~~l~~~~~~L~~L~L~--------------------------~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~  198 (374)
                      +++.+++.+..++.+++.+.+.                          .|..+++.++..+...+..|+.|+.++|.. +
T Consensus       229 i~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~-~  307 (483)
T KOG4341|consen  229 ISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHALQVLCYSSCTD-I  307 (483)
T ss_pred             hhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhHhhhhcccCCCC-C
Confidence            7665555555555544444444                          444455555555555566677777777665 6


Q ss_pred             cHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCH
Q 017279          199 TDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITD  278 (374)
Q Consensus       199 ~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~  278 (374)
                      ++..+..+..++++|+.|-+.+|..+++.++..+..+++.|+.+++.+|..+++..+..+..+||.|+.|.+++|..+++
T Consensus       308 ~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD  387 (483)
T KOG4341|consen  308 TDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITD  387 (483)
T ss_pred             chHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhh
Confidence            77777777777888888888877777787777777778888888888877777777777777888888888888888888


Q ss_pred             HHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccccee
Q 017279          279 RAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVC  358 (374)
Q Consensus       279 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~  358 (374)
                      +++..+....              .....|+.+.+++|+.+++..++.+       ..|++|+.+++-+|..++.+...-
T Consensus       388 ~gi~~l~~~~--------------c~~~~l~~lEL~n~p~i~d~~Le~l-------~~c~~Leri~l~~~q~vtk~~i~~  446 (483)
T KOG4341|consen  388 EGIRHLSSSS--------------CSLEGLEVLELDNCPLITDATLEHL-------SICRNLERIELIDCQDVTKEAISR  446 (483)
T ss_pred             hhhhhhhhcc--------------ccccccceeeecCCCCchHHHHHHH-------hhCcccceeeeechhhhhhhhhHH
Confidence            8777776532              1457899999999999999888876       689999999999999988776655


Q ss_pred             cCccc
Q 017279          359 AGQSH  363 (374)
Q Consensus       359 ~~~~~  363 (374)
                      ..+++
T Consensus       447 ~~~~l  451 (483)
T KOG4341|consen  447 FATHL  451 (483)
T ss_pred             HHhhC
Confidence            44433

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.95  E-value=5.5e-28  Score=200.32  Aligned_cols=267  Identities=25%  Similarity=0.424  Sum_probs=215.0

Q ss_pred             CccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc--cCceeecccccccchH-----------------------
Q 017279           41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL--GLTHLSLSWCKNNMNN-----------------------   95 (374)
Q Consensus        41 ~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~--~l~~L~l~~~~~~~~~-----------------------   95 (374)
                      ..|.+||+||+..||+.|..+++..++.||+|||.....  .|..+|+..-......                       
T Consensus        96 v~~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV~v~Rlar~~~~~pr  175 (419)
T KOG2120|consen   96 VSWDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGVIVFRLARSFMDQPR  175 (419)
T ss_pred             CCcccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCeEEEEcchhhhcCch
Confidence            349999999999999999999999999999999987643  3666666532211111                       


Q ss_pred             HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHH
Q 017279           96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA  175 (374)
Q Consensus        96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  175 (374)
                      +..-....-.++++|+++  ...++...+..+.+.|.+|+.|.+.+. .+.+.....++++ .+|+.|+++.|.+++..+
T Consensus       176 lae~~~~frsRlq~lDLS--~s~it~stl~~iLs~C~kLk~lSlEg~-~LdD~I~~~iAkN-~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  176 LAEHFSPFRSRLQHLDLS--NSVITVSTLHGILSQCSKLKNLSLEGL-RLDDPIVNTIAKN-SNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hhhhhhhhhhhhHHhhcc--hhheeHHHHHHHHHHHHhhhhcccccc-ccCcHHHHHHhcc-ccceeeccccccccchhH
Confidence            111111122469999999  778899999999999999999999995 7888888888874 899999999999999999


Q ss_pred             HHHHHhcCCCCcEEEcCCCccCccHHHHHH-HHhcCCCCCEEeccCCC-CCCHHHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279          176 LAYLCGFCRKLKILNLCGCVKAATDYALQA-IGRNCNQLQSLNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITDD  253 (374)
Q Consensus       176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~-~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~  253 (374)
                      +..+...|..|.+|++++|..  ..+.... +..--++|+.|+++++. ++....+..+.+.||+|.+||++.|..++++
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l--~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~  329 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFL--FTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKND  329 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhc--cchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCch
Confidence            999999999999999999874  3333444 33345789999998863 4566678888899999999999999999998


Q ss_pred             HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279          254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA  333 (374)
Q Consensus       254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  333 (374)
                      .+..+.+ ++.|++|.++.|..|.++.+.++...                  |+|.+|++.||  +++..++-+...+|.
T Consensus       330 ~~~~~~k-f~~L~~lSlsRCY~i~p~~~~~l~s~------------------psl~yLdv~g~--vsdt~mel~~e~~~~  388 (419)
T KOG2120|consen  330 CFQEFFK-FNYLQHLSLSRCYDIIPETLLELNSK------------------PSLVYLDVFGC--VSDTTMELLKEMLSH  388 (419)
T ss_pred             HHHHHHh-cchheeeehhhhcCCChHHeeeeccC------------------cceEEEEeccc--cCchHHHHHHHhCcc
Confidence            8777775 99999999999999998888877766                  89999999996  566677777655555


Q ss_pred             c
Q 017279          334 L  334 (374)
Q Consensus       334 l  334 (374)
                      +
T Consensus       389 l  389 (419)
T KOG2120|consen  389 L  389 (419)
T ss_pred             c
Confidence            4

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=99.86  E-value=6.6e-22  Score=164.42  Aligned_cols=274  Identities=22%  Similarity=0.252  Sum_probs=214.2

Q ss_pred             CCCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCC-------CHHHHHHHhcCCCccchhhhcccc---hh
Q 017279            5 ATNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDI-------PMELLLRILSLVDEPTVIVASGVC---SG   72 (374)
Q Consensus         5 ~~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L-------p~eil~~If~~L~~~~l~~~~~vc---~~   72 (374)
                      |.-||||++..||++|..-++..++.||  |.+-+.+.+.|..+       .++.+.++.+.=-  -..++++..   .+
T Consensus        98 ~~slpDEill~IFs~L~kk~LL~~~~VC~Rfyr~~~de~lW~~lDl~~r~i~p~~l~~l~~rgV--~v~Rlar~~~~~pr  175 (419)
T KOG2120|consen   98 WDSLPDEILLGIFSCLCKKELLKVSGVCKRFYRLASDESLWQTLDLTGRNIHPDVLGRLLSRGV--IVFRLARSFMDQPR  175 (419)
T ss_pred             cccCCHHHHHHHHHhccHHHHHHHHHHHHHHhhccccccceeeeccCCCccChhHHHHHHhCCe--EEEEcchhhhcCch
Confidence            5579999999999999999999999999  44556667777755       3456666655310  011222111   11


Q ss_pred             HHH---hhhccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH
Q 017279           73 WRD---AICLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS  149 (374)
Q Consensus        73 w~~---~~~~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~  149 (374)
                      +.+   .+...++++|++.... +...+..+...|.+|+.|.+.  ...+++.....+++ ..+|+.|+++++..++..+
T Consensus       176 lae~~~~frsRlq~lDLS~s~i-t~stl~~iLs~C~kLk~lSlE--g~~LdD~I~~~iAk-N~~L~~lnlsm~sG~t~n~  251 (419)
T KOG2120|consen  176 LAEHFSPFRSRLQHLDLSNSVI-TVSTLHGILSQCSKLKNLSLE--GLRLDDPIVNTIAK-NSNLVRLNLSMCSGFTENA  251 (419)
T ss_pred             hhhhhhhhhhhhHHhhcchhhe-eHHHHHHHHHHHHhhhhcccc--ccccCcHHHHHHhc-cccceeeccccccccchhH
Confidence            221   2234588999987643 445677888899999999999  77888888888877 6899999999999999999


Q ss_pred             HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHH
Q 017279          150 LYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGV  229 (374)
Q Consensus       150 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~  229 (374)
                      +..+...|..|..|++++|..+++.....+.+--++|..|+++||...+.+..+..+.+.||+|.+|+++++..+++..+
T Consensus       252 ~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~  331 (419)
T KOG2120|consen  252 LQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCF  331 (419)
T ss_pred             HHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHH
Confidence            99999999999999999987777664444455578999999999877677778888899999999999999888888555


Q ss_pred             HHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC
Q 017279          230 MNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG  288 (374)
Q Consensus       230 ~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~  288 (374)
                      ..+. .++.|++|.++.|..+.++.+..+.. .|.|.+|++.+|  +++..++.+...+
T Consensus       332 ~~~~-kf~~L~~lSlsRCY~i~p~~~~~l~s-~psl~yLdv~g~--vsdt~mel~~e~~  386 (419)
T KOG2120|consen  332 QEFF-KFNYLQHLSLSRCYDIIPETLLELNS-KPSLVYLDVFGC--VSDTTMELLKEML  386 (419)
T ss_pred             HHHH-hcchheeeehhhhcCCChHHeeeecc-CcceEEEEeccc--cCchHHHHHHHhC
Confidence            5554 68999999999999998888766654 899999999998  6777777776654

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.57  E-value=1.3e-12  Score=117.68  Aligned_cols=250  Identities=22%  Similarity=0.185  Sum_probs=158.8

Q ss_pred             cCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCCCCCC--hHHHH---HHHHhCCCCCEEecCCCCCC--CHHHH
Q 017279           80 GLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDKPQLE--DNAVE---AIANSCHDLQDLDLSKSFKL--SDRSL  150 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~~---~l~~~~~~L~~L~l~~~~~~--~~~~~  150 (374)
                      .++.+++..+......  .+.......+++++++++  ...+.  ...+.   .....+++|+.|+++++...  ....+
T Consensus        24 ~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~--~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~  101 (319)
T cd00116          24 CLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLS--LNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVL  101 (319)
T ss_pred             hccEEeecCCCCcHHHHHHHHHHHhhCCCceEEecc--ccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHHH
Confidence            3788888876653322  234445567788888887  33444  22222   22233678999999887432  22233


Q ss_pred             HHHHhcCCCCcEEeecCCCCCCHHHHHHH---HhcC-CCCcEEEcCCCccCccHHH---HHHHHhcCCCCCEEeccCCCC
Q 017279          151 YALAHGCPNLTRLNISGCTSFSDHALAYL---CGFC-RKLKILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWCED  223 (374)
Q Consensus       151 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~l---~~~~-~~L~~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~  223 (374)
                      ..+... ++|++|++++| .+.+.+...+   ...+ ++|++|+++++.  ++...   +......+++|++|+++++. 
T Consensus       102 ~~l~~~-~~L~~L~ls~~-~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~~~~~~~~~~~L~~L~l~~n~-  176 (319)
T cd00116         102 ESLLRS-SSLQELKLNNN-GLGDRGLRLLAKGLKDLPPALEKLVLGRNR--LEGASCEALAKALRANRDLKELNLANNG-  176 (319)
T ss_pred             HHHhcc-CcccEEEeeCC-ccchHHHHHHHHHHHhCCCCceEEEcCCCc--CCchHHHHHHHHHHhCCCcCEEECcCCC-
Confidence            344444 56999999885 4555444432   2345 788999999876  44333   23334456789999998854 


Q ss_pred             CCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCcccc
Q 017279          224 VGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWE  297 (374)
Q Consensus       224 ~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~  297 (374)
                      +++..+..+..   .+++|++|++++| .+++.....+   ...+++|++|++++|. +++.++..+......       
T Consensus       177 l~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~~~~~l~~~~~~~~~L~~L~ls~n~-l~~~~~~~l~~~~~~-------  247 (319)
T cd00116         177 IGDAGIRALAEGLKANCNLEVLDLNNN-GLTDEGASALAETLASLKSLEVLNLGDNN-LTDAGAAALASALLS-------  247 (319)
T ss_pred             CchHHHHHHHHHHHhCCCCCEEeccCC-ccChHHHHHHHHHhcccCCCCEEecCCCc-CchHHHHHHHHHHhc-------
Confidence            66655554433   3468999999985 5665554333   3357889999999885 777677666544210       


Q ss_pred             ccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279          298 SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC  356 (374)
Q Consensus       298 ~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~  356 (374)
                            ..+.|++|++++| .+++.+...+.+.++.   +++|+.|+++++. ++.+++
T Consensus       248 ------~~~~L~~L~l~~n-~i~~~~~~~l~~~~~~---~~~L~~l~l~~N~-l~~~~~  295 (319)
T cd00116         248 ------PNISLLTLSLSCN-DITDDGAKDLAEVLAE---KESLLELDLRGNK-FGEEGA  295 (319)
T ss_pred             ------cCCCceEEEccCC-CCCcHHHHHHHHHHhc---CCCccEEECCCCC-CcHHHH
Confidence                  1268999999885 6776666666655443   3788999999884 665543

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.52  E-value=2.5e-12  Score=115.78  Aligned_cols=233  Identities=25%  Similarity=0.240  Sum_probs=158.1

Q ss_pred             HHHhhcCCCCcEEEeeCCCCCCChHHHHH---HHHhCCCCCEEecCCCCCCC--HHHHHHH---HhcCCCCcEEeecCCC
Q 017279           98 LSLAPKLTKLQTLVLRQDKPQLEDNAVEA---IANSCHDLQDLDLSKSFKLS--DRSLYAL---AHGCPNLTRLNISGCT  169 (374)
Q Consensus        98 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~~~--~~~~~~l---~~~~~~L~~L~L~~~~  169 (374)
                      ...+....+++.++++  ...+++.....   .....+++++++++++ .+.  ...+..+   ...+++|++|+++++.
T Consensus        16 ~~~~~~l~~L~~l~l~--~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~-~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~   92 (319)
T cd00116          16 TELLPKLLCLQVLRLE--GNTLGEEAAKALASALRPQPSLKELCLSLN-ETGRIPRGLQSLLQGLTKGCGLQELDLSDNA   92 (319)
T ss_pred             HHHHHHHhhccEEeec--CCCCcHHHHHHHHHHHhhCCCceEEecccc-ccCCcchHHHHHHHHHHhcCceeEEEccCCC
Confidence            3455566779999999  55665544333   3345677999999886 344  2333322   2337899999999864


Q ss_pred             CC--CHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHH---HhcC-CCCCEEeccCCCCCCHHH---HHHHHhcCCCCC
Q 017279          170 SF--SDHALAYLCGFCRKLKILNLCGCVKAATDYALQAI---GRNC-NQLQSLNLGWCEDVGDVG---VMNLAYGCPDLR  240 (374)
Q Consensus       170 ~~--~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~-~~L~~L~l~~~~~~~~~~---~~~l~~~~~~L~  240 (374)
                      ..  ....+..+... ++|++|+++++.  +.+.....+   ...+ ++|+.|+++++. ++...   +......+++|+
T Consensus        93 ~~~~~~~~~~~l~~~-~~L~~L~ls~~~--~~~~~~~~l~~~l~~~~~~L~~L~L~~n~-l~~~~~~~~~~~~~~~~~L~  168 (319)
T cd00116          93 LGPDGCGVLESLLRS-SSLQELKLNNNG--LGDRGLRLLAKGLKDLPPALEKLVLGRNR-LEGASCEALAKALRANRDLK  168 (319)
T ss_pred             CChhHHHHHHHHhcc-CcccEEEeeCCc--cchHHHHHHHHHHHhCCCCceEEEcCCCc-CCchHHHHHHHHHHhCCCcC
Confidence            32  22233334444 669999999876  554444332   2345 899999999875 55333   333445678999


Q ss_pred             eeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          241 SLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       241 ~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      .|++++| .+++..+..+...   .++|+.|++++|. +++.++..+....              ..+++|++|++++| 
T Consensus       169 ~L~l~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~l~~~~--------------~~~~~L~~L~ls~n-  231 (319)
T cd00116         169 ELNLANN-GIGDAGIRALAEGLKANCNLEVLDLNNNG-LTDEGASALAETL--------------ASLKSLEVLNLGDN-  231 (319)
T ss_pred             EEECcCC-CCchHHHHHHHHHHHhCCCCCEEeccCCc-cChHHHHHHHHHh--------------cccCCCCEEecCCC-
Confidence            9999995 6776666555433   5699999999995 8877776665432              24589999999994 


Q ss_pred             CCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccce
Q 017279          318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV  357 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~  357 (374)
                      .+++..+..++..++.  ..++|+.|++++| .+++.+..
T Consensus       232 ~l~~~~~~~l~~~~~~--~~~~L~~L~l~~n-~i~~~~~~  268 (319)
T cd00116         232 NLTDAGAAALASALLS--PNISLLTLSLSCN-DITDDGAK  268 (319)
T ss_pred             cCchHHHHHHHHHHhc--cCCCceEEEccCC-CCCcHHHH
Confidence            7888888877765543  4688999999999 47654443

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.51  E-value=1.8e-13  Score=130.35  Aligned_cols=145  Identities=32%  Similarity=0.574  Sum_probs=76.6

Q ss_pred             HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC-CCCCC--HHHHHHHHhcCCCCcEEeecCCCCCCHHH
Q 017279           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK-SFKLS--DRSLYALAHGCPNLTRLNISGCTSFSDHA  175 (374)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~-~~~~~--~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  175 (374)
                      .+...+++++.+.+. .+..+.+.....+...++.|++|++.+ +....  ......+...|++|+.|+++++..+++.+
T Consensus       182 ~l~~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~  260 (482)
T KOG1947|consen  182 RLLSSCPLLKRLSLS-GCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIG  260 (482)
T ss_pred             HHHhhCchhhHhhhc-ccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchh
Confidence            333345556666555 444555544445555556666666654 11111  11122244445566666666554455555


Q ss_pred             HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecC
Q 017279          176 LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLC  245 (374)
Q Consensus       176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~  245 (374)
                      +..+...|++|++|.+.+|.. +++.++..++..|++|++|++++|..+++.++..+...|++|+.|.+.
T Consensus       261 l~~l~~~c~~L~~L~l~~c~~-lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~  329 (482)
T KOG1947|consen  261 LSALASRCPNLETLSLSNCSN-LTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLL  329 (482)
T ss_pred             HHHHHhhCCCcceEccCCCCc-cchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhh
Confidence            555555566666666555543 455556666656666666666655555555555555555555554433

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=99.50  E-value=2e-13  Score=130.04  Aligned_cols=256  Identities=30%  Similarity=0.402  Sum_probs=180.6

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCC-CCCC--ChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHh
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQD-KPQL--EDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAH  155 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~~~--~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  155 (374)
                      ..++.+.+..+....+.....+...+++|+.|.++ . +...  .......+...+++|+.|+++.+..+++.++..++.
T Consensus       188 ~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~-~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  188 PLLKRLSLSGCSKITDDSLDALALKCPNLEELDLS-GCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             chhhHhhhcccccCChhhHHHHHhhCchhheeccc-CcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            44677777777666665567788899999999998 3 2222  233334466778999999999987799999999999


Q ss_pred             cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCC---CCCHHHHHHH
Q 017279          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCE---DVGDVGVMNL  232 (374)
Q Consensus       156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~---~~~~~~~~~l  232 (374)
                      .|++|++|.+.+|..+++.++..+...|++|++|++++|.. +++..+..+...|++|+.|.+....   .+++..+...
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~-~~d~~l~~~~~~c~~l~~l~~~~~~~c~~l~~~~l~~~  345 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG-LTDSGLEALLKNCPNLRELKLLSLNGCPSLTDLSLSGL  345 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc-chHHHHHHHHHhCcchhhhhhhhcCCCccHHHHHHHHh
Confidence            99999999999888899999999999999999999999986 5778888888889998888765443   2444443333


Q ss_pred             HhcCC-CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279          233 AYGCP-DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL  311 (374)
Q Consensus       233 ~~~~~-~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  311 (374)
                      ....+ .+..+.+.+|+.+++..+.... .......+.+.+|+.++ ..+......                 +..++.|
T Consensus       346 ~~~~~d~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~~~l~gc~~l~-~~l~~~~~~-----------------~~~l~~L  406 (482)
T KOG1947|consen  346 LTLTSDDLAELILRSCPKLTDLSLSYCG-ISDLGLELSLRGCPNLT-ESLELRLCR-----------------SDSLRVL  406 (482)
T ss_pred             hccCchhHhHHHHhcCCCcchhhhhhhh-ccCcchHHHhcCCcccc-hHHHHHhcc-----------------CCccceE
Confidence            33222 4444444444444444443333 11111134445555554 444433333                 2349999


Q ss_pred             ecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCc
Q 017279          312 NISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQ  361 (374)
Q Consensus       312 ~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~  361 (374)
                      +++.|..+++..+......      |.+++.+++++|+.++........+
T Consensus       407 ~l~~~~~~t~~~l~~~~~~------~~~~~~l~~~~~~~~~~~~~~~~~~  450 (482)
T KOG1947|consen  407 NLSDCRLVTDKGLRCLADS------CSNLKDLDLSGCRVITLKSLEGFAS  450 (482)
T ss_pred             ecccCccccccchHHHhhh------hhccccCCccCcccccchhhhhhhc
Confidence            9999999998888776522      7888999999999998877654433

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.26  E-value=1.5e-10  Score=99.28  Aligned_cols=257  Identities=23%  Similarity=0.262  Sum_probs=165.1

Q ss_pred             ccCceeecccccccch--HHHHHHhhcCCCCcEEEeeCCCC--CCChHH------HHHHHHhCCCCCEEecCCCCCCC--
Q 017279           79 LGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKP--QLEDNA------VEAIANSCHDLQDLDLSKSFKLS--  146 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~--~~~~~~------~~~l~~~~~~L~~L~l~~~~~~~--  146 (374)
                      ..++.++|++...-..  ..+.......++|+..+++ ...  ...+..      +......+|.|++|+|+.+..-.  
T Consensus        30 ~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~s-d~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~g  108 (382)
T KOG1909|consen   30 DSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLS-DMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPKG  108 (382)
T ss_pred             CceEEEeccCCchhHHHHHHHHHHHhhcccceeeehH-hhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCccc
Confidence            3478888887654332  2344455566788888887 111  111221      22222347899999999973332  


Q ss_pred             HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHH------------HhcCCCCcEEEcCCCccC-ccHHHHHHHHhcCCCC
Q 017279          147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYL------------CGFCRKLKILNLCGCVKA-ATDYALQAIGRNCNQL  213 (374)
Q Consensus       147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l------------~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~L  213 (374)
                      ...+..+.+.|..|++|.|.+| ++.+.+-..+            ...-+.|+.+..+..... .....+...++.++.|
T Consensus       109 ~~~l~~ll~s~~~L~eL~L~N~-Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~l  187 (382)
T KOG1909|consen  109 IRGLEELLSSCTDLEELYLNNC-GLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHPTL  187 (382)
T ss_pred             hHHHHHHHHhccCHHHHhhhcC-CCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcccc
Confidence            2356667777999999999986 6655443321            234578999988764421 1223445567788999


Q ss_pred             CEEeccCCCCCCHHHHHH---HHhcCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279          214 QSLNLGWCEDVGDVGVMN---LAYGCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQS  287 (374)
Q Consensus       214 ~~L~l~~~~~~~~~~~~~---l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~  287 (374)
                      +.+++..+. +..++...   -+.+||+|+.|++.. +.++.++-..+   ...+|+|+.|++++|- +.+.+..++...
T Consensus       188 eevr~~qN~-I~~eG~~al~eal~~~~~LevLdl~D-Ntft~egs~~LakaL~s~~~L~El~l~dcl-l~~~Ga~a~~~a  264 (382)
T KOG1909|consen  188 EEVRLSQNG-IRPEGVTALAEALEHCPHLEVLDLRD-NTFTLEGSVALAKALSSWPHLRELNLGDCL-LENEGAIAFVDA  264 (382)
T ss_pred             ceEEEeccc-ccCchhHHHHHHHHhCCcceeeeccc-chhhhHHHHHHHHHhcccchheeecccccc-cccccHHHHHHH
Confidence            999997643 44444433   345799999999999 45665544333   3347889999999995 777777666544


Q ss_pred             CCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccc--cccccee
Q 017279          288 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNL--TSVHCVC  358 (374)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l--~~~~~~~  358 (374)
                      -.+             ..|+|+.|.+.+ +.++-.+...++....   ..|.|++|++++|. +  .++++..
T Consensus       265 l~~-------------~~p~L~vl~l~g-NeIt~da~~~la~~~~---ek~dL~kLnLngN~-l~e~de~i~e  319 (382)
T KOG1909|consen  265 LKE-------------SAPSLEVLELAG-NEITRDAALALAACMA---EKPDLEKLNLNGNR-LGEKDEGIDE  319 (382)
T ss_pred             Hhc-------------cCCCCceeccCc-chhHHHHHHHHHHHHh---cchhhHHhcCCccc-ccccchhHHH
Confidence            221             348999999999 5777666655554433   36889999999996 5  4444433

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.23  E-value=1.7e-11  Score=126.63  Aligned_cols=254  Identities=19%  Similarity=0.160  Sum_probs=142.3

Q ss_pred             chhHHHhhhc---cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC
Q 017279           70 CSGWRDAICL---GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS  146 (374)
Q Consensus        70 c~~w~~~~~~---~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  146 (374)
                      |..|..+.|.   .++.|++.......  .....+..+++|+.|+++  .+.+.......+...+++|++|+++++. +.
T Consensus        57 ~c~w~gv~c~~~~~v~~L~L~~~~i~~--~~~~~~~~l~~L~~L~Ls--~n~~~~~ip~~~~~~l~~L~~L~Ls~n~-l~  131 (968)
T PLN00113         57 VCLWQGITCNNSSRVVSIDLSGKNISG--KISSAIFRLPYIQTINLS--NNQLSGPIPDDIFTTSSSLRYLNLSNNN-FT  131 (968)
T ss_pred             CCcCcceecCCCCcEEEEEecCCCccc--cCChHHhCCCCCCEEECC--CCccCCcCChHHhccCCCCCEEECcCCc-cc
Confidence            4567766653   47788887643221  123345578999999998  4455444444444457899999998863 32


Q ss_pred             HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCH
Q 017279          147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD  226 (374)
Q Consensus       147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  226 (374)
                      .....   ..+++|++|+++++ .+... ++.....+++|++|+++++.  +... +......+++|++|+++++. +..
T Consensus       132 ~~~p~---~~l~~L~~L~Ls~n-~~~~~-~p~~~~~l~~L~~L~L~~n~--l~~~-~p~~~~~l~~L~~L~L~~n~-l~~  202 (968)
T PLN00113        132 GSIPR---GSIPNLETLDLSNN-MLSGE-IPNDIGSFSSLKVLDLGGNV--LVGK-IPNSLTNLTSLEFLTLASNQ-LVG  202 (968)
T ss_pred             cccCc---cccCCCCEEECcCC-ccccc-CChHHhcCCCCCEEECccCc--cccc-CChhhhhCcCCCeeeccCCC-CcC
Confidence            21111   23678888888874 33321 22233457888888888754  2221 22223457888888887754 322


Q ss_pred             HHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccc-----ccc
Q 017279          227 VGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWE-----SMK  300 (374)
Q Consensus       227 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~-----~~~  300 (374)
                      . +......+++|+.|++++| .++......+. .+++|++|++++|. ++......+.... ++......+     .+.
T Consensus       203 ~-~p~~l~~l~~L~~L~L~~n-~l~~~~p~~l~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~  278 (968)
T PLN00113        203 Q-IPRELGQMKSLKWIYLGYN-NLSGEIPYEIG-GLTSLNHLDLVYNN-LTGPIPSSLGNLKNLQYLFLYQNKLSGPIPP  278 (968)
T ss_pred             c-CChHHcCcCCccEEECcCC-ccCCcCChhHh-cCCCCCEEECcCce-eccccChhHhCCCCCCEEECcCCeeeccCch
Confidence            1 1222345678888888874 34322222333 47788888887774 3322222222211 000001111     112


Q ss_pred             cccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      .+..+++|++|++++| .++.....       .+..+++|+.|++++|.
T Consensus       279 ~l~~l~~L~~L~Ls~n-~l~~~~p~-------~~~~l~~L~~L~l~~n~  319 (968)
T PLN00113        279 SIFSLQKLISLDLSDN-SLSGEIPE-------LVIQLQNLEILHLFSNN  319 (968)
T ss_pred             hHhhccCcCEEECcCC-eeccCCCh-------hHcCCCCCcEEECCCCc
Confidence            2556788888888874 34321111       23567889999998885

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.22  E-value=4.4e-10  Score=96.54  Aligned_cols=233  Identities=25%  Similarity=0.322  Sum_probs=159.8

Q ss_pred             HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCCC--CCCHHHHH------HHHhcCCCCcEEe
Q 017279           96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSF--KLSDRSLY------ALAHGCPNLTRLN  164 (374)
Q Consensus        96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~--~~~~~~~~------~l~~~~~~L~~L~  164 (374)
                      .+.........++.++++  .+.+.......+.   ..-++|+..+++...  ...++.+.      .-...||+|++|+
T Consensus        21 ~v~~~~~~~~s~~~l~ls--gnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ld   98 (382)
T KOG1909|consen   21 DVEEELEPMDSLTKLDLS--GNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLD   98 (382)
T ss_pred             hHHHHhcccCceEEEecc--CCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEee
Confidence            455566677889999999  5566655444444   345678888887641  22222222      2223579999999


Q ss_pred             ecCCCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHH------------HhcCCCCCEEeccCCCCCCH---
Q 017279          165 ISGCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAI------------GRNCNQLQSLNLGWCEDVGD---  226 (374)
Q Consensus       165 L~~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~~~~~~~---  226 (374)
                      |+. +-+.+.   ++..+...+.+|++|.|.+|.  +....-..+            ..+-+.|+.+...++. +.+   
T Consensus        99 LSD-NA~G~~g~~~l~~ll~s~~~L~eL~L~N~G--lg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNr-len~ga  174 (382)
T KOG1909|consen   99 LSD-NAFGPKGIRGLEELLSSCTDLEELYLNNCG--LGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNR-LENGGA  174 (382)
T ss_pred             ccc-cccCccchHHHHHHHHhccCHHHHhhhcCC--CChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccc-cccccH
Confidence            997 455444   455566779999999999976  443332222            2245889999997743 333   


Q ss_pred             HHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCcccccccccc
Q 017279          227 VGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRY  303 (374)
Q Consensus       227 ~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~  303 (374)
                      ..+...++.+|.|+.+.+.. +.|..+++..+   +.+||+|+.|++.++. ++..+-..++..              ++
T Consensus       175 ~~~A~~~~~~~~leevr~~q-N~I~~eG~~al~eal~~~~~LevLdl~DNt-ft~egs~~Laka--------------L~  238 (382)
T KOG1909|consen  175 TALAEAFQSHPTLEEVRLSQ-NGIRPEGVTALAEALEHCPHLEVLDLRDNT-FTLEGSVALAKA--------------LS  238 (382)
T ss_pred             HHHHHHHHhccccceEEEec-ccccCchhHHHHHHHHhCCcceeeecccch-hhhHHHHHHHHH--------------hc
Confidence            33455566789999999998 46665555333   3469999999999986 777676666654              23


Q ss_pred             CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      .+++|++|+++.| .+.+.+..++++.+...  .|+|+.|.+.||. +|-.
T Consensus       239 s~~~L~El~l~dc-ll~~~Ga~a~~~al~~~--~p~L~vl~l~gNe-It~d  285 (382)
T KOG1909|consen  239 SWPHLRELNLGDC-LLENEGAIAFVDALKES--APSLEVLELAGNE-ITRD  285 (382)
T ss_pred             ccchheeeccccc-ccccccHHHHHHHHhcc--CCCCceeccCcch-hHHH
Confidence            5689999999997 57777777777665543  8999999999995 6543

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=99.15  E-value=1e-10  Score=120.93  Aligned_cols=177  Identities=19%  Similarity=0.122  Sum_probs=83.9

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++++.....  .+  ....++|+.|+++  .+.+.......+ ..+++|++|+++++. +.......+. .++
T Consensus       118 ~~L~~L~Ls~n~l~~~--~p--~~~l~~L~~L~Ls--~n~~~~~~p~~~-~~l~~L~~L~L~~n~-l~~~~p~~~~-~l~  188 (968)
T PLN00113        118 SSLRYLNLSNNNFTGS--IP--RGSIPNLETLDLS--NNMLSGEIPNDI-GSFSSLKVLDLGGNV-LVGKIPNSLT-NLT  188 (968)
T ss_pred             CCCCEEECcCCccccc--cC--ccccCCCCEEECc--CCcccccCChHH-hcCCCCCEEECccCc-ccccCChhhh-hCc
Confidence            4578888876543211  10  1245677777777  344433222233 336777777777752 2222222222 356


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++. +... ++.....+++|++|+++++.  +... +......+++|++|+++++. +... +......+++
T Consensus       189 ~L~~L~L~~n~-l~~~-~p~~l~~l~~L~~L~L~~n~--l~~~-~p~~l~~l~~L~~L~L~~n~-l~~~-~p~~l~~l~~  261 (968)
T PLN00113        189 SLEFLTLASNQ-LVGQ-IPRELGQMKSLKWIYLGYNN--LSGE-IPYEIGGLTSLNHLDLVYNN-LTGP-IPSSLGNLKN  261 (968)
T ss_pred             CCCeeeccCCC-CcCc-CChHHcCcCCccEEECcCCc--cCCc-CChhHhcCCCCCEEECcCce-eccc-cChhHhCCCC
Confidence            77777776642 2211 12223346667777666543  2211 11222345666666666543 2211 1112234556


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC  273 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~  273 (374)
                      |+.|++++|. ++......+. .+++|+.|++++|
T Consensus       262 L~~L~L~~n~-l~~~~p~~l~-~l~~L~~L~Ls~n  294 (968)
T PLN00113        262 LQYLFLYQNK-LSGPIPPSIF-SLQKLISLDLSDN  294 (968)
T ss_pred             CCEEECcCCe-eeccCchhHh-hccCcCEEECcCC
Confidence            6666666532 2211111222 2555666666555

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.15  E-value=1.4e-11  Score=108.44  Aligned_cols=222  Identities=23%  Similarity=0.180  Sum_probs=142.8

Q ss_pred             HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (374)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~  178 (374)
                      .-...+.+|+.+.++  +..+.........+.|++++.|+++.+-......+..+++.+|+|+.|+|+.+ .+....-..
T Consensus       115 akQsn~kkL~~IsLd--n~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~N-rl~~~~~s~  191 (505)
T KOG3207|consen  115 AKQSNLKKLREISLD--NYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSN-RLSNFISSN  191 (505)
T ss_pred             HHhhhHHhhhheeec--CccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccc-cccCCcccc
Confidence            334466778888888  55555444435556799999999999866677778888889999999999863 221111011


Q ss_pred             HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCHHHHHH
Q 017279          179 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITDDSVIA  257 (374)
Q Consensus       179 l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~  257 (374)
                      ....++.|+.|.++.|.  ++...+..+...+|+|+.|.+..+..+... .-..   -+..|++|+|++++.++...+..
T Consensus       192 ~~~~l~~lK~L~l~~CG--ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~---i~~~L~~LdLs~N~li~~~~~~~  266 (505)
T KOG3207|consen  192 TTLLLSHLKQLVLNSCG--LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTK---ILQTLQELDLSNNNLIDFDQGYK  266 (505)
T ss_pred             chhhhhhhheEEeccCC--CCHHHHHHHHHhCCcHHHhhhhcccccceecchhh---hhhHHhhccccCCcccccccccc
Confidence            11246889999999987  667777777778999999999875322211 1112   23578999999977766554444


Q ss_pred             HHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC
Q 017279          258 LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC  337 (374)
Q Consensus       258 l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~  337 (374)
                      +. .+|+|+.|+++.|. +++-.....            +.......+++|+.|++..++-.+...+..       ++..
T Consensus       267 ~~-~l~~L~~Lnls~tg-i~si~~~d~------------~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~-------l~~l  325 (505)
T KOG3207|consen  267 VG-TLPGLNQLNLSSTG-IASIAEPDV------------ESLDKTHTFPKLEYLNISENNIRDWRSLNH-------LRTL  325 (505)
T ss_pred             cc-cccchhhhhccccC-cchhcCCCc------------cchhhhcccccceeeecccCccccccccch-------hhcc
Confidence            44 48899999888774 443211111            011112256899999998844333334433       3556


Q ss_pred             CCCceEEecCCc
Q 017279          338 SGRHSLVMSGCL  349 (374)
Q Consensus       338 ~~L~~L~ls~C~  349 (374)
                      ++|+.|.+.+.+
T Consensus       326 ~nlk~l~~~~n~  337 (505)
T KOG3207|consen  326 ENLKHLRITLNY  337 (505)
T ss_pred             chhhhhhccccc
Confidence            777777765443

>PLN03210 Resistant to P

Probab=99.08  E-value=3.5e-10  Score=117.79  Aligned_cols=47  Identities=17%  Similarity=0.232  Sum_probs=35.2

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC  356 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~  356 (374)
                      +..+++|+.|++++|+++.....        .+..+++|+.+++++|.+++...+
T Consensus       865 i~~l~~L~~L~L~~C~~L~~l~~--------~~~~L~~L~~L~l~~C~~L~~~~l  911 (1153)
T PLN03210        865 IEKFSNLSFLDMNGCNNLQRVSL--------NISKLKHLETVDFSDCGALTEASW  911 (1153)
T ss_pred             HhcCCCCCEEECCCCCCcCccCc--------ccccccCCCeeecCCCcccccccC
Confidence            56788999999999888764211        235678889999999998876544

syringae 6; Provisional

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.88  E-value=1.4e-08  Score=98.91  Aligned_cols=60  Identities=23%  Similarity=0.282  Sum_probs=24.5

Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGW  220 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  220 (374)
                      +|++|++++...+...-...+...+|+|++|.+.+..  +..+.+..+..++|+|..|++++
T Consensus       123 nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~--~~~~dF~~lc~sFpNL~sLDIS~  182 (699)
T KOG3665|consen  123 NLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQ--FDNDDFSQLCASFPNLRSLDISG  182 (699)
T ss_pred             hhhhcCccccchhhccHHHHHhhhCcccceEEecCce--ecchhHHHHhhccCccceeecCC
Confidence            4444444443333222233333334444444444422  23333444444444444444444

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=98.88  E-value=1.1e-08  Score=99.52  Aligned_cols=149  Identities=26%  Similarity=0.293  Sum_probs=95.0

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      .+|++|+++|...+...-...+...+|.|++|.+.+ ..+....+..+...+|+|..||++++.  +++  +..+ .+++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~-~~~~~~dF~~lc~sFpNL~sLDIS~Tn--I~n--l~GI-S~Lk  195 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISG-RQFDNDDFSQLCASFPNLRSLDISGTN--ISN--LSGI-SRLK  195 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecC-ceecchhHHHHhhccCccceeecCCCC--ccC--cHHH-hccc
Confidence            568888888766666666667777788888888877 455555577777778888888888754  322  2222 2577


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH-HHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD-SVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS  287 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~-~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~  287 (374)
                      +|+.|.+.+..-.+...+..++ .+.+|+.||++........ .+....+   .+|+|+.|+.++.+ ++++.++.+...
T Consensus       196 nLq~L~mrnLe~e~~~~l~~LF-~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTd-i~~~~le~ll~s  273 (699)
T KOG3665|consen  196 NLQVLSMRNLEFESYQDLIDLF-NLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTD-INEEILEELLNS  273 (699)
T ss_pred             cHHHHhccCCCCCchhhHHHHh-cccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcc-hhHHHHHHHHHh
Confidence            7888887765433335555665 4678888888874433322 1222222   36777777777664 777777766665


Q ss_pred             C
Q 017279          288 G  288 (374)
Q Consensus       288 ~  288 (374)
                      .
T Consensus       274 H  274 (699)
T KOG3665|consen  274 H  274 (699)
T ss_pred             C
Confidence            3

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=98.87  E-value=8.6e-10  Score=97.43  Aligned_cols=193  Identities=19%  Similarity=0.142  Sum_probs=109.7

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      ..+|+.+.+.++ .+...+.....+.|++++.|+|+.+-.-.-..+..++..+|+|+.|+++........+..  .....
T Consensus       120 ~kkL~~IsLdn~-~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~--~~~~l  196 (505)
T KOG3207|consen  120 LKKLREISLDNY-RVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN--TTLLL  196 (505)
T ss_pred             HHhhhheeecCc-cccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc--chhhh
Confidence            456667777664 333333334445577777777776322223345566667777777777653321111111  11245


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      ++|+.|.++.|. ++...+..++..||+|+.|.+.++..+.-.....  .....|+.|+|+++..++.+......     
T Consensus       197 ~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~--~i~~~L~~LdLs~N~li~~~~~~~~~-----  268 (505)
T KOG3207|consen  197 SHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATST--KILQTLQELDLSNNNLIDFDQGYKVG-----  268 (505)
T ss_pred             hhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchh--hhhhHHhhccccCCcccccccccccc-----
Confidence            677777777764 6666777777777777777777753332111110  11345777777777666654444333     


Q ss_pred             CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                                   .+|+|+.|+++.| .+.+...-.. .+.-....+|+|+.|+++..+
T Consensus       269 -------------~l~~L~~Lnls~t-gi~si~~~d~-~s~~kt~~f~kL~~L~i~~N~  312 (505)
T KOG3207|consen  269 -------------TLPGLNQLNLSST-GIASIAEPDV-ESLDKTHTFPKLEYLNISENN  312 (505)
T ss_pred             -------------cccchhhhhcccc-CcchhcCCCc-cchhhhcccccceeeecccCc
Confidence                         4589999999874 4543221111 011123568999999998764

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.75  E-value=1.7e-09  Score=98.94  Aligned_cols=157  Identities=17%  Similarity=0.153  Sum_probs=75.6

Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCC---CHHHHHHH
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI---TDDSVIAL  258 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l---~~~~l~~l  258 (374)
                      .+.++++|+|....  +.... ....-.+..|+.|+++.+. +.......+ ..+++|++|+++++ .+   .+..+.. 
T Consensus       267 ~l~kme~l~L~~N~--l~~vn-~g~lfgLt~L~~L~lS~Na-I~rih~d~W-sftqkL~~LdLs~N-~i~~l~~~sf~~-  339 (873)
T KOG4194|consen  267 GLEKMEHLNLETNR--LQAVN-EGWLFGLTSLEQLDLSYNA-IQRIHIDSW-SFTQKLKELDLSSN-RITRLDEGSFRV-  339 (873)
T ss_pred             eecccceeecccch--hhhhh-cccccccchhhhhccchhh-hheeecchh-hhcccceeEecccc-ccccCChhHHHH-
Confidence            35567777776532  21111 1112235667777776532 222222222 13577777777763 33   2333332 


Q ss_pred             HhcCCCCceEecCCCCCCC---H---HHHHHHHhcCCCCCCccccccc---cccCCCCCcEEecCCCCCCCHHHHHHHHh
Q 017279          259 ANGCPHLRSLGLYYCRNIT---D---RAIYSLAQSGVKNKPGIWESMK---GRYDEEGLQSLNISQCTALTPPAVQALCD  329 (374)
Q Consensus       259 ~~~~~~L~~L~l~~~~~i~---~---~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~L~~L~l~~~~~l~~~~l~~l~~  329 (374)
                         +..|+.|+++++. ++   +   .++..+....+..-+..|..=.   .+.++++|+.|.+.| +++....-+++  
T Consensus       340 ---L~~Le~LnLs~Ns-i~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAf--  412 (873)
T KOG4194|consen  340 ---LSQLEELNLSHNS-IDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAF--  412 (873)
T ss_pred             ---HHHhhhhcccccc-hHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhh--
Confidence               3346666666553 22   2   2222232222222222222111   145567788888877 55654333332  


Q ss_pred             hCCCccCCCCCceEEecCCccccccccee
Q 017279          330 TFPALHTCSGRHSLVMSGCLNLTSVHCVC  358 (374)
Q Consensus       330 ~~~~l~~~~~L~~L~ls~C~~l~~~~~~~  358 (374)
                           ..++.|++|++.+.. +.+++.+.
T Consensus       413 -----sgl~~LE~LdL~~Na-iaSIq~nA  435 (873)
T KOG4194|consen  413 -----SGLEALEHLDLGDNA-IASIQPNA  435 (873)
T ss_pred             -----ccCcccceecCCCCc-ceeecccc
Confidence                 456677888877764 44444443

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=98.74  E-value=6.9e-09  Score=64.22  Aligned_cols=37  Identities=32%  Similarity=0.527  Sum_probs=32.5

Q ss_pred             cCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        43 ~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      |..||+|++.+||++++.+|+.++++|||+|++++..
T Consensus         1 i~~LP~Eil~~If~~L~~~dl~~~~~vcr~w~~~~~~   37 (47)
T PF12937_consen    1 ISSLPDEILLEIFSYLDPRDLLRLSLVCRRWRRIAND   37 (47)
T ss_dssp             CCCS-HHHHHHHHTTS-HHHHHHHTTSSHHHHHHHTC
T ss_pred             ChHhHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHCC
Confidence            6789999999999999999999999999999998743

>PLN03210 Resistant to P

Probab=98.69  E-value=6.6e-08  Score=101.03  Aligned_cols=43  Identities=28%  Similarity=0.434  Sum_probs=31.1

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~  353 (374)
                      +..+++|+.|+|++|..+..         +|....+++|+.|++++|.++..
T Consensus       798 i~~L~~L~~L~Ls~C~~L~~---------LP~~~~L~sL~~L~Ls~c~~L~~  840 (1153)
T PLN03210        798 IQNLHKLEHLEIENCINLET---------LPTGINLESLESLDLSGCSRLRT  840 (1153)
T ss_pred             hhCCCCCCEEECCCCCCcCe---------eCCCCCccccCEEECCCCCcccc
Confidence            56778899999988876652         34333577888888888877654

syringae 6; Provisional

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.53  E-value=8.7e-08  Score=80.98  Aligned_cols=146  Identities=18%  Similarity=0.142  Sum_probs=99.5

Q ss_pred             HHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHH
Q 017279          122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDY  201 (374)
Q Consensus       122 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~  201 (374)
                      ..+..+...++.++.+++.++..-.++.+..+.+++|.|+.|+++.+ .+.. .+..+.....+|+.|-|.+..  ....
T Consensus        61 gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N-~L~s-~I~~lp~p~~nl~~lVLNgT~--L~w~  136 (418)
T KOG2982|consen   61 GDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCN-SLSS-DIKSLPLPLKNLRVLVLNGTG--LSWT  136 (418)
T ss_pred             hhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCC-cCCC-ccccCcccccceEEEEEcCCC--CChh
Confidence            44556667788899999998755566677888888999999999863 3322 122222235689999998854  6667


Q ss_pred             HHHHHHhcCCCCCEEeccCCC----CCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          202 ALQAIGRNCNQLQSLNLGWCE----DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       202 ~~~~l~~~~~~L~~L~l~~~~----~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ....+....|.++.|+++.+.    .+++.....   .-|.+++|.+.+|...-+..+..+.+.+|++..+-+..|+
T Consensus       137 ~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~e~---~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~P  210 (418)
T KOG2982|consen  137 QSTSSLDDLPKVTELHMSDNSLRQLNLDDNCIED---WSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGP  210 (418)
T ss_pred             hhhhhhhcchhhhhhhhccchhhhhccccccccc---cchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCc
Confidence            777777788888988887642    122222222   2256777777777655555666677778888888888776

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.52  E-value=2.3e-06  Score=71.65  Aligned_cols=36  Identities=22%  Similarity=0.166  Sum_probs=15.3

Q ss_pred             CCCCeeecCCCCCCCHHHHHHHH----hcCCCCceEecCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALA----NGCPHLRSLGLYYC  273 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~----~~~~~L~~L~l~~~  273 (374)
                      .+|+.+.+.. +.|.++++..+.    ..+.+|+.|++.++
T Consensus       185 ~~lk~vki~q-NgIrpegv~~L~~~gl~y~~~LevLDlqDN  224 (388)
T COG5238         185 ENLKEVKIQQ-NGIRPEGVTMLAFLGLFYSHSLEVLDLQDN  224 (388)
T ss_pred             cCceeEEeee-cCcCcchhHHHHHHHHHHhCcceeeecccc
Confidence            3455555554 344444332222    12444555555444

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.47  E-value=5.9e-09  Score=96.39  Aligned_cols=127  Identities=20%  Similarity=0.177  Sum_probs=63.5

Q ss_pred             cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHH----HHHHH
Q 017279          209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDR----AIYSL  284 (374)
Q Consensus       209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~----~~~~l  284 (374)
                      ..++|+.|+++++. ++.-.+  -...+.+|++|+++.+ .++  .+..-.-.+++|+.|.+.++. ++.+    ++-.+
T Consensus       243 ~l~~LrrLNLS~N~-iteL~~--~~~~W~~lEtLNlSrN-QLt--~LP~avcKL~kL~kLy~n~Nk-L~FeGiPSGIGKL  315 (1255)
T KOG0444|consen  243 KLRNLRRLNLSGNK-ITELNM--TEGEWENLETLNLSRN-QLT--VLPDAVCKLTKLTKLYANNNK-LTFEGIPSGIGKL  315 (1255)
T ss_pred             hhhhhheeccCcCc-eeeeec--cHHHHhhhhhhccccc-hhc--cchHHHhhhHHHHHHHhccCc-ccccCCccchhhh
Confidence            35666666666632 333111  1122456666666663 332  121111125666666655543 3322    22222


Q ss_pred             HhcC-CCCCCccccc-cccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCcccc
Q 017279          285 AQSG-VKNKPGIWES-MKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLT  352 (374)
Q Consensus       285 ~~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~  352 (374)
                      .... +....-..+. +.+++.|..|+.|.++.+.-++          +| .++.+|.|+.||+...+++.
T Consensus       316 ~~Levf~aanN~LElVPEglcRC~kL~kL~L~~NrLiT----------LPeaIHlL~~l~vLDlreNpnLV  376 (1255)
T KOG0444|consen  316 IQLEVFHAANNKLELVPEGLCRCVKLQKLKLDHNRLIT----------LPEAIHLLPDLKVLDLRENPNLV  376 (1255)
T ss_pred             hhhHHHHhhccccccCchhhhhhHHHHHhcccccceee----------chhhhhhcCCcceeeccCCcCcc
Confidence            2211 0000111122 2347788888888887754343          22 23567888999999998873

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=98.46  E-value=4e-08  Score=90.25  Aligned_cols=240  Identities=22%  Similarity=0.210  Sum_probs=122.6

Q ss_pred             ceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279           82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT  161 (374)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  161 (374)
                      +.|++++.....  .-...+...++|+.+.+.  .+.++.  +..+......|+.|+|..+ .++...-+.+.. .|.|+
T Consensus        81 ~~LdlsnNkl~~--id~~~f~nl~nLq~v~l~--~N~Lt~--IP~f~~~sghl~~L~L~~N-~I~sv~se~L~~-l~alr  152 (873)
T KOG4194|consen   81 QTLDLSNNKLSH--IDFEFFYNLPNLQEVNLN--KNELTR--IPRFGHESGHLEKLDLRHN-LISSVTSEELSA-LPALR  152 (873)
T ss_pred             eeeecccccccc--CcHHHHhcCCcceeeeec--cchhhh--cccccccccceeEEeeecc-ccccccHHHHHh-Hhhhh
Confidence            456666543321  222344567777777776  333322  1111122345777777765 333322333322 57777


Q ss_pred             EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCe
Q 017279          162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS  241 (374)
Q Consensus       162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  241 (374)
                      +|+|+. +.+.....+.+. .-+++++|+|++..  +++-....+. .+.+|..|.++.+. ++.-. ...++.+|+|+.
T Consensus       153 slDLSr-N~is~i~~~sfp-~~~ni~~L~La~N~--It~l~~~~F~-~lnsL~tlkLsrNr-ittLp-~r~Fk~L~~L~~  225 (873)
T KOG4194|consen  153 SLDLSR-NLISEIPKPSFP-AKVNIKKLNLASNR--ITTLETGHFD-SLNSLLTLKLSRNR-ITTLP-QRSFKRLPKLES  225 (873)
T ss_pred             hhhhhh-chhhcccCCCCC-CCCCceEEeecccc--cccccccccc-ccchheeeecccCc-ccccC-HHHhhhcchhhh
Confidence            777775 233332222111 23567888887633  4443333333 34577777777643 44322 223445778888


Q ss_pred             eecCCCCCCCHHHHHHHHhcCCCCceEecCCCC--CCCHHHHHHHHhcCCCCCCcccccc-----ccccCCCCCcEEecC
Q 017279          242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCR--NITDRAIYSLAQSGVKNKPGIWESM-----KGRYDEEGLQSLNIS  314 (374)
Q Consensus       242 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~--~i~~~~~~~l~~~~~~~~~~~~~~~-----~~~~~~~~L~~L~l~  314 (374)
                      |++..+ .+.-..... +++++.|+.|.+..+.  .++|..+..+.+.  +......+.+     ..+.+++.|+.|+++
T Consensus       226 LdLnrN-~irive~lt-FqgL~Sl~nlklqrN~I~kL~DG~Fy~l~km--e~l~L~~N~l~~vn~g~lfgLt~L~~L~lS  301 (873)
T KOG4194|consen  226 LDLNRN-RIRIVEGLT-FQGLPSLQNLKLQRNDISKLDDGAFYGLEKM--EHLNLETNRLQAVNEGWLFGLTSLEQLDLS  301 (873)
T ss_pred             hhcccc-ceeeehhhh-hcCchhhhhhhhhhcCcccccCcceeeeccc--ceeecccchhhhhhcccccccchhhhhccc
Confidence            888773 443221222 2357777777776553  1223222222221  1111222222     227788888988888


Q ss_pred             CCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279          315 QCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC  348 (374)
Q Consensus       315 ~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C  348 (374)
                      . +.+....+       .....|++|+.|+++..
T Consensus       302 ~-NaI~rih~-------d~WsftqkL~~LdLs~N  327 (873)
T KOG4194|consen  302 Y-NAIQRIHI-------DSWSFTQKLKELDLSSN  327 (873)
T ss_pred             h-hhhheeec-------chhhhcccceeEecccc
Confidence            7 34432111       12357999999999976

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=98.28  E-value=7.7e-08  Score=89.22  Aligned_cols=105  Identities=22%  Similarity=0.212  Sum_probs=54.0

Q ss_pred             cCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCC--HHHHHHHHhc---CC-CCCCccccccccccCCCCC
Q 017279          235 GCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT--DRAIYSLAQS---GV-KNKPGIWESMKGRYDEEGL  308 (374)
Q Consensus       235 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~--~~~~~~l~~~---~~-~~~~~~~~~~~~~~~~~~L  308 (374)
                      .+++|+.|++++ +.++.-..  -.....+|++|+++.+. ++  ++.+-.+.+.   -. .+...+-..+.||+++.+|
T Consensus       243 ~l~~LrrLNLS~-N~iteL~~--~~~~W~~lEtLNlSrNQ-Lt~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~L  318 (1255)
T KOG0444|consen  243 KLRNLRRLNLSG-NKITELNM--TEGEWENLETLNLSRNQ-LTVLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQL  318 (1255)
T ss_pred             hhhhhheeccCc-Cceeeeec--cHHHHhhhhhhccccch-hccchHHHhhhHHHHHHHhccCcccccCCccchhhhhhh
Confidence            346666666666 34442211  11124566666666653 22  2222222221   11 1222333344557777777


Q ss_pred             cEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCccccc
Q 017279          309 QSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       309 ~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~  353 (374)
                      +++..++ +.+.         ..| .+..|++|+.|.++...-+|-
T Consensus       319 evf~aan-N~LE---------lVPEglcRC~kL~kL~L~~NrLiTL  354 (1255)
T KOG0444|consen  319 EVFHAAN-NKLE---------LVPEGLCRCVKLQKLKLDHNRLITL  354 (1255)
T ss_pred             HHHHhhc-cccc---------cCchhhhhhHHHHHhcccccceeec
Confidence            7777766 3332         122 235799999999988776653

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.25  E-value=7.9e-05  Score=62.71  Aligned_cols=20  Identities=20%  Similarity=0.286  Sum_probs=9.1

Q ss_pred             CCceEEecCCcccccccceec
Q 017279          339 GRHSLVMSGCLNLTSVHCVCA  359 (374)
Q Consensus       339 ~L~~L~ls~C~~l~~~~~~~~  359 (374)
                      .|+.|.+.+|- +.+.+..++
T Consensus       243 ~lrEL~lnDCl-ls~~G~~~v  262 (388)
T COG5238         243 LLRELRLNDCL-LSNEGVKSV  262 (388)
T ss_pred             hhhhccccchh-hccccHHHH
Confidence            34555555552 444444443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.23  E-value=4.9e-07  Score=76.56  Aligned_cols=179  Identities=20%  Similarity=0.145  Sum_probs=86.4

Q ss_pred             cccccccchHHHHHHhhcCCCCcEEEeeCCCCCCCh-HHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 017279           86 LSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLED-NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLN  164 (374)
Q Consensus        86 l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  164 (374)
                      +.++.......+..+...+++++.+++.  .+.+++ ..+..+.+.+|.|+.|+++.+..-++  +..+.....+|+.|.
T Consensus        52 ln~~~id~~gd~~~~~~~~~~v~elDL~--~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~--I~~lp~p~~nl~~lV  127 (418)
T KOG2982|consen   52 LNGSIIDNEGDVMLFGSSVTDVKELDLT--GNLISDWSEIGAILEQLPALTTLNLSCNSLSSD--IKSLPLPLKNLRVLV  127 (418)
T ss_pred             ecCCCCCcchhHHHHHHHhhhhhhhhcc--cchhccHHHHHHHHhcCccceEeeccCCcCCCc--cccCcccccceEEEE
Confidence            3333333334444555566666677766  444443 33455556667777777766532222  112211245677777


Q ss_pred             ecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc---CccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCe
Q 017279          165 ISGCTSFSDHALAYLCGFCRKLKILNLCGCVK---AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS  241 (374)
Q Consensus       165 L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~---~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  241 (374)
                      |.+ +.++-.....+...+|.+++|.++....   .+.++..   ....+.+.+|++..|..........+.+.+|++..
T Consensus       128 LNg-T~L~w~~~~s~l~~lP~vtelHmS~N~~rq~n~Dd~c~---e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~s  203 (418)
T KOG2982|consen  128 LNG-TGLSWTQSTSSLDDLPKVTELHMSDNSLRQLNLDDNCI---EDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNS  203 (418)
T ss_pred             EcC-CCCChhhhhhhhhcchhhhhhhhccchhhhhccccccc---cccchhhhhhhcCCcHHHHHHHHHhHHhhcccchh
Confidence            766 4555555555556666666666654210   0111111   11234555666655432222233344445666666


Q ss_pred             eecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279          242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYC  273 (374)
Q Consensus       242 L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~  273 (374)
                      +-+..|+ +.+..-..-.+..|.+..|+++..
T Consensus       204 v~v~e~P-lK~~s~ek~se~~p~~~~LnL~~~  234 (418)
T KOG2982|consen  204 VFVCEGP-LKTESSEKGSEPFPSLSCLNLGAN  234 (418)
T ss_pred             eeeecCc-ccchhhcccCCCCCcchhhhhccc
Confidence            6666543 322222222233455555555544

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=98.23  E-value=3.1e-07  Score=57.15  Aligned_cols=37  Identities=32%  Similarity=0.503  Sum_probs=31.5

Q ss_pred             ccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279           42 EWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        42 ~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~   78 (374)
                      +|.+||+|++.+||++++..++.++++||++|++++.
T Consensus         2 ~~~~LP~~il~~Il~~l~~~~~~~l~~vsk~~~~~~~   38 (48)
T PF00646_consen    2 PLSDLPDEILQEILSYLDPKDLLRLSLVSKRWRSLVD   38 (48)
T ss_dssp             HHHHS-HHHHHHHHHTS-HHHHHHHCTT-HHHHHHHT
T ss_pred             CHHHCCHHHHHHHHHHCcHHHHHHHHHHhhHHHHHHc
Confidence            5778999999999999999999999999999998764

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=98.15  E-value=1.6e-06  Score=83.93  Aligned_cols=124  Identities=19%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             CCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCC--CCCCHHHHHHHHhcCCCCceEecCCCCCCCH--HHHHHHHhcC
Q 017279          213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC--VCITDDSVIALANGCPHLRSLGLYYCRNITD--RAIYSLAQSG  288 (374)
Q Consensus       213 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~--~~~~~l~~~~  288 (374)
                      |+.|.+.+ ..+++..+..+. ++++||.|+++++  ..+.+..+    +.++.|+.|+++++. ++.  +.+..+....
T Consensus       361 Lq~Lylan-N~Ltd~c~p~l~-~~~hLKVLhLsyNrL~~fpas~~----~kle~LeeL~LSGNk-L~~Lp~tva~~~~L~  433 (1081)
T KOG0618|consen  361 LQELYLAN-NHLTDSCFPVLV-NFKHLKVLHLSYNRLNSFPASKL----RKLEELEELNLSGNK-LTTLPDTVANLGRLH  433 (1081)
T ss_pred             HHHHHHhc-Ccccccchhhhc-cccceeeeeecccccccCCHHHH----hchHHhHHHhcccch-hhhhhHHHHhhhhhH
Confidence            33344443 234554444443 4667777777774  12222222    235567777777664 321  1111111110


Q ss_pred             -CCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccc
Q 017279          289 -VKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNL  351 (374)
Q Consensus       289 -~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l  351 (374)
                       ..-..-....+.++..++.|+.+|++. ++++...+....   |    -|+|+.||++|...+
T Consensus       434 tL~ahsN~l~~fPe~~~l~qL~~lDlS~-N~L~~~~l~~~~---p----~p~LkyLdlSGN~~l  489 (1081)
T KOG0618|consen  434 TLRAHSNQLLSFPELAQLPQLKVLDLSC-NNLSEVTLPEAL---P----SPNLKYLDLSGNTRL  489 (1081)
T ss_pred             HHhhcCCceeechhhhhcCcceEEeccc-chhhhhhhhhhC---C----CcccceeeccCCccc
Confidence             001111122334566789999999986 788876665442   2    289999999999853

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.05  E-value=6.1e-06  Score=66.20  Aligned_cols=89  Identities=26%  Similarity=0.395  Sum_probs=71.5

Q ss_pred             CcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCC
Q 017279          186 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHL  265 (374)
Q Consensus       186 L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L  265 (374)
                      ++.++-+++.  +...++..+. .++.++.|.+.+|..+.|..+..+....|+|+.|++++|+.||+.++..+.. +++|
T Consensus       103 IeaVDAsds~--I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~-lknL  178 (221)
T KOG3864|consen  103 IEAVDASDSS--IMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLK-LKNL  178 (221)
T ss_pred             EEEEecCCch--HHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHH-hhhh
Confidence            5666666644  6667777765 5888899999988888898888888778899999999999999998888875 8899


Q ss_pred             ceEecCCCCCCCH
Q 017279          266 RSLGLYYCRNITD  278 (374)
Q Consensus       266 ~~L~l~~~~~i~~  278 (374)
                      +.|.+.+-+.+.+
T Consensus       179 r~L~l~~l~~v~~  191 (221)
T KOG3864|consen  179 RRLHLYDLPYVAN  191 (221)
T ss_pred             HHHHhcCchhhhc
Confidence            9998887765554

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.02  E-value=5.2e-06  Score=66.59  Aligned_cols=89  Identities=21%  Similarity=0.326  Sum_probs=75.8

Q ss_pred             CCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCC
Q 017279          213 LQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNK  292 (374)
Q Consensus       213 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~  292 (374)
                      ++.++-+++ .+..+++..+. .++.++.|.+.+|..+.+.++..+....|+|+.|++++|+.|++.++..+.+.     
T Consensus       103 IeaVDAsds-~I~~eGle~L~-~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~l-----  175 (221)
T KOG3864|consen  103 IEAVDASDS-SIMYEGLEHLR-DLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKL-----  175 (221)
T ss_pred             EEEEecCCc-hHHHHHHHHHh-ccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHh-----
Confidence            555666663 46777777764 68999999999999999999999998899999999999999999999999877     


Q ss_pred             CccccccccccCCCCCcEEecCCCCCCCH
Q 017279          293 PGIWESMKGRYDEEGLQSLNISQCTALTP  321 (374)
Q Consensus       293 ~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  321 (374)
                                   ++|+.|.+.+-..+.+
T Consensus       176 -------------knLr~L~l~~l~~v~~  191 (221)
T KOG3864|consen  176 -------------KNLRRLHLYDLPYVAN  191 (221)
T ss_pred             -------------hhhHHHHhcCchhhhc
Confidence                         8999999988665554

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=97.94  E-value=4e-06  Score=50.02  Aligned_cols=33  Identities=30%  Similarity=0.454  Sum_probs=30.9

Q ss_pred             CCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279           46 IPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        46 Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~   78 (374)
                      ||+|++..||++++..++.++++||++|+.++.
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~~~~~~~   33 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRRWRSLID   33 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhc
Confidence            799999999999999999999999999998764

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.92  E-value=1.1e-06  Score=70.58  Aligned_cols=59  Identities=27%  Similarity=0.347  Sum_probs=15.7

Q ss_pred             cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279          209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC  273 (374)
Q Consensus       209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~  273 (374)
                      .+.+|+.|+++++. +..  +.. ...+++|++|++++ +.++... ..+...+|+|+.|+++++
T Consensus        40 ~l~~L~~L~Ls~N~-I~~--l~~-l~~L~~L~~L~L~~-N~I~~i~-~~l~~~lp~L~~L~L~~N   98 (175)
T PF14580_consen   40 TLDKLEVLDLSNNQ-ITK--LEG-LPGLPRLKTLDLSN-NRISSIS-EGLDKNLPNLQELYLSNN   98 (175)
T ss_dssp             T-TT--EEE-TTS---S----TT-----TT--EEE--S-S---S-C-HHHHHH-TT--EEE-TTS
T ss_pred             hhcCCCEEECCCCC-Ccc--ccC-ccChhhhhhcccCC-CCCCccc-cchHHhCCcCCEEECcCC
Confidence            34555555555533 222  111 12345566666665 3343211 112223566666666554

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=97.89  E-value=3.6e-06  Score=67.64  Aligned_cols=131  Identities=21%  Similarity=0.237  Sum_probs=46.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      +..+++|++.++ .++.  ++.+...+.+|+.|+++++ .+...  .. ...++.|+.|++++..  +..-. ..+...+
T Consensus        18 ~~~~~~L~L~~n-~I~~--Ie~L~~~l~~L~~L~Ls~N-~I~~l--~~-l~~L~~L~~L~L~~N~--I~~i~-~~l~~~l   87 (175)
T PF14580_consen   18 PVKLRELNLRGN-QIST--IENLGATLDKLEVLDLSNN-QITKL--EG-LPGLPRLKTLDLSNNR--ISSIS-EGLDKNL   87 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS---S----TT-----TT--EEE--SS-----S-C-HHHHHH-
T ss_pred             cccccccccccc-cccc--ccchhhhhcCCCEEECCCC-CCccc--cC-ccChhhhhhcccCCCC--CCccc-cchHHhC
Confidence            345778888875 3332  3344434678888888874 44331  11 1237888999888743  33211 2233458


Q ss_pred             CCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCHH--HHHHHHhcCCCCceEecCCCC
Q 017279          211 NQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITDD--SVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      |+|++|.++++. +.+. .+.. ...+|+|+.|++.+++ ++..  --..+...+|+|+.|+-....
T Consensus        88 p~L~~L~L~~N~-I~~l~~l~~-L~~l~~L~~L~L~~NP-v~~~~~YR~~vi~~lP~Lk~LD~~~V~  151 (175)
T PF14580_consen   88 PNLQELYLSNNK-ISDLNELEP-LSSLPKLRVLSLEGNP-VCEKKNYRLFVIYKLPSLKVLDGQDVT  151 (175)
T ss_dssp             TT--EEE-TTS----SCCCCGG-GGG-TT--EEE-TT-G-GGGSTTHHHHHHHH-TT-SEETTEETT
T ss_pred             CcCCEEECcCCc-CCChHHhHH-HHcCCCcceeeccCCc-ccchhhHHHHHHHHcChhheeCCEEcc
Confidence            889999988753 3331 1222 3468999999999854 4321  223455568999999876543

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=97.66  E-value=1e-05  Score=71.39  Aligned_cols=63  Identities=19%  Similarity=0.154  Sum_probs=38.9

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCccccccCCCCCC
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTASSIPHP  372 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~~~~~~~~  372 (374)
                      +.++.+|+.|++++ ++++-....+       ......|..|.+-+.+---+=++.+...=+|..+.+-+|
T Consensus       318 f~~ls~L~tL~L~~-N~it~~~~~a-------F~~~~~l~~l~l~~Np~~CnC~l~wl~~Wlr~~~~~~~~  380 (498)
T KOG4237|consen  318 FQGLSGLKTLSLYD-NQITTVAPGA-------FQTLFSLSTLNLLSNPFNCNCRLAWLGEWLRKKSVVGNP  380 (498)
T ss_pred             hhccccceeeeecC-CeeEEEeccc-------ccccceeeeeehccCcccCccchHHHHHHHhhCCCCCCC
Confidence            45668888899988 5665322211       134456778888777766665666665555555555454

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=97.64  E-value=2.6e-05  Score=66.44  Aligned_cols=40  Identities=13%  Similarity=0.177  Sum_probs=22.8

Q ss_pred             cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      .++-+|..|++++ +++..  ++++    ..++++|-|+.+.+.+.+
T Consensus       371 ~KLYSLvnLDl~~-N~Ie~--ldeV----~~IG~LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  371 RKLYSLVNLDLSS-NQIEE--LDEV----NHIGNLPCLETLRLTGNP  410 (490)
T ss_pred             Hhhhhheeccccc-cchhh--HHHh----cccccccHHHHHhhcCCC
Confidence            3446777777777 34432  1221    234566777777776665

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.50  E-value=0.00023  Score=71.76  Aligned_cols=213  Identities=19%  Similarity=0.115  Sum_probs=108.3

Q ss_pred             CCCCCEEecCCCCC-CCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          131 CHDLQDLDLSKSFK-LSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       131 ~~~L~~L~l~~~~~-~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      ++.|++|-+..+.. +.. ........+|.|+.|++++|....  .++...+.+-+|++|+++++.  +  ..++.-..+
T Consensus       544 ~~~L~tLll~~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~--~LP~~I~~Li~LryL~L~~t~--I--~~LP~~l~~  616 (889)
T KOG4658|consen  544 NPKLRTLLLQRNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLS--KLPSSIGELVHLRYLDLSDTG--I--SHLPSGLGN  616 (889)
T ss_pred             CCccceEEEeecchhhhh-cCHHHHhhCcceEEEECCCCCccC--cCChHHhhhhhhhcccccCCC--c--cccchHHHH
Confidence            56677777776532 111 111223347888888888654322  244444556778888888743  2  244444445


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC-CCCHHHHHHHHhcCCCCceEecCCCCC---CCHHHHHHHH
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCRN---ITDRAIYSLA  285 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~~---i~~~~~~~l~  285 (374)
                      +..|.+|++........  +..+...+++|++|.+.... ..+...+..+ ..+.+|+.+.+.....   ..-..+..+.
T Consensus       617 Lk~L~~Lnl~~~~~l~~--~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el-~~Le~L~~ls~~~~s~~~~e~l~~~~~L~  693 (889)
T KOG4658|consen  617 LKKLIYLNLEVTGRLES--IPGILLELQSLRVLRLPRSALSNDKLLLKEL-ENLEHLENLSITISSVLLLEDLLGMTRLR  693 (889)
T ss_pred             HHhhheecccccccccc--ccchhhhcccccEEEeeccccccchhhHHhh-hcccchhhheeecchhHhHhhhhhhHHHH
Confidence            66788888876443222  13344456788888887743 2222222333 2355555555533321   0001111222


Q ss_pred             hcCCCCC--Ccc-ccccccccCCCCCcEEecCCCCCCCHHH--------------HHHH-H------hhCCCccCCCCCc
Q 017279          286 QSGVKNK--PGI-WESMKGRYDEEGLQSLNISQCTALTPPA--------------VQAL-C------DTFPALHTCSGRH  341 (374)
Q Consensus       286 ~~~~~~~--~~~-~~~~~~~~~~~~L~~L~l~~~~~l~~~~--------------l~~l-~------~~~~~l~~~~~L~  341 (374)
                      .......  ... ......+..+.+|+.|.+.+|...+...              +..+ .      +...+....|+|+
T Consensus       694 ~~~~~l~~~~~~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~  773 (889)
T KOG4658|consen  694 SLLQSLSIEGCSKRTLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLT  773 (889)
T ss_pred             HHhHhhhhcccccceeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccccccccchhhccCccc
Confidence            1111111  011 1111226678999999998876532111              1111 1      1111224678899


Q ss_pred             eEEecCCccccc
Q 017279          342 SLVMSGCLNLTS  353 (374)
Q Consensus       342 ~L~ls~C~~l~~  353 (374)
                      .|.+.+|..+++
T Consensus       774 ~l~l~~~~~~e~  785 (889)
T KOG4658|consen  774 SLSLVSCRLLED  785 (889)
T ss_pred             EEEEeccccccc
Confidence            999999987754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.30  E-value=0.00019  Score=70.98  Aligned_cols=111  Identities=23%  Similarity=0.189  Sum_probs=53.6

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .-..|+++.....  .....+   .++++.|.+.  .+.++.     +....++|++|+++++ .++.  +.   ...++
T Consensus       202 ~~~~LdLs~~~Lt--sLP~~l---~~~L~~L~L~--~N~Lt~-----LP~lp~~Lk~LdLs~N-~Lts--LP---~lp~s  263 (788)
T PRK15387        202 GNAVLNVGESGLT--TLPDCL---PAHITTLVIP--DNNLTS-----LPALPPELRTLEVSGN-QLTS--LP---VLPPG  263 (788)
T ss_pred             CCcEEEcCCCCCC--cCCcch---hcCCCEEEcc--CCcCCC-----CCCCCCCCcEEEecCC-ccCc--cc---Ccccc
Confidence            3456776665332  111111   1367777777  344432     1123567888888775 3332  11   12356


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC  221 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  221 (374)
                      |++|+++++ .+..  ++.   ..++|+.|+++++.  +..  +   ....++|+.|+++++
T Consensus       264 L~~L~Ls~N-~L~~--Lp~---lp~~L~~L~Ls~N~--Lt~--L---P~~p~~L~~LdLS~N  312 (788)
T PRK15387        264 LLELSIFSN-PLTH--LPA---LPSGLCKLWIFGNQ--LTS--L---PVLPPGLQELSVSDN  312 (788)
T ss_pred             cceeeccCC-chhh--hhh---chhhcCEEECcCCc--ccc--c---cccccccceeECCCC
Confidence            777777653 2321  221   13456666666533  221  1   112356666666654

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=97.25  E-value=0.0004  Score=68.77  Aligned_cols=35  Identities=43%  Similarity=0.545  Sum_probs=20.7

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~  353 (374)
                      .+|+.|++++ +.++         .+|.+  .++|+.|+++++. ++.
T Consensus       382 ~~L~~LdLs~-N~Lt---------~LP~l--~s~L~~LdLS~N~-Lss  416 (788)
T PRK15387        382 SGLKELIVSG-NRLT---------SLPVL--PSELKELMVSGNR-LTS  416 (788)
T ss_pred             cccceEEecC-Cccc---------CCCCc--ccCCCEEEccCCc-CCC
Confidence            4677888877 3444         12222  3567788888774 543

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=97.24  E-value=0.0012  Score=66.65  Aligned_cols=109  Identities=28%  Similarity=0.214  Sum_probs=60.8

Q ss_pred             cCCCCcEEEeeCCCCC-CChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279          103 KLTKLQTLVLRQDKPQ-LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (374)
Q Consensus       103 ~~~~L~~L~l~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~  181 (374)
                      .++++++|-+. .+.. +.. ....+...++.|+.||+++|..+.. ....+ ..+-+||+|++++ +.+.  .++.-..
T Consensus       543 ~~~~L~tLll~-~n~~~l~~-is~~ff~~m~~LrVLDLs~~~~l~~-LP~~I-~~Li~LryL~L~~-t~I~--~LP~~l~  615 (889)
T KOG4658|consen  543 ENPKLRTLLLQ-RNSDWLLE-ISGEFFRSLPLLRVLDLSGNSSLSK-LPSSI-GELVHLRYLDLSD-TGIS--HLPSGLG  615 (889)
T ss_pred             CCCccceEEEe-ecchhhhh-cCHHHHhhCcceEEEECCCCCccCc-CChHH-hhhhhhhcccccC-CCcc--ccchHHH
Confidence            45567777766 2221 111 1112234578899999987643322 22233 3367888888887 4554  2333344


Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC  221 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  221 (374)
                      .+..|.+|++......   ..+..+...+++|++|.+...
T Consensus       616 ~Lk~L~~Lnl~~~~~l---~~~~~i~~~L~~Lr~L~l~~s  652 (889)
T KOG4658|consen  616 NLKKLIYLNLEVTGRL---ESIPGILLELQSLRVLRLPRS  652 (889)
T ss_pred             HHHhhheecccccccc---ccccchhhhcccccEEEeecc
Confidence            5667888888764421   122344445777888877653

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=97.09  E-value=0.00012  Score=71.63  Aligned_cols=125  Identities=27%  Similarity=0.302  Sum_probs=71.1

Q ss_pred             CCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCC--CCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      |+.|.+.++ .+++..+..+.. +++||.|+|+++  ..|++..+.    +++.|++|+|+|..  ..  .+..-...++
T Consensus       361 Lq~LylanN-~Ltd~c~p~l~~-~~hLKVLhLsyNrL~~fpas~~~----kle~LeeL~LSGNk--L~--~Lp~tva~~~  430 (1081)
T KOG0618|consen  361 LQELYLANN-HLTDSCFPVLVN-FKHLKVLHLSYNRLNSFPASKLR----KLEELEELNLSGNK--LT--TLPDTVANLG  430 (1081)
T ss_pred             HHHHHHhcC-cccccchhhhcc-ccceeeeeecccccccCCHHHHh----chHHhHHHhcccch--hh--hhhHHHHhhh
Confidence            444455553 566666665544 789999999874  235555444    56889999998844  22  2222222466


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .|++|...++.-..   +..+. ..+.|+.+|++. +.++...+..... .|+|++|+++++.
T Consensus       431 ~L~tL~ahsN~l~~---fPe~~-~l~qL~~lDlS~-N~L~~~~l~~~~p-~p~LkyLdlSGN~  487 (1081)
T KOG0618|consen  431 RLHTLRAHSNQLLS---FPELA-QLPQLKVLDLSC-NNLSEVTLPEALP-SPNLKYLDLSGNT  487 (1081)
T ss_pred             hhHHHhhcCCceee---chhhh-hcCcceEEeccc-chhhhhhhhhhCC-CcccceeeccCCc
Confidence            66666665432111   12222 356677777775 4565544443332 3677777777665

>PF12937 F-box-like: F-box-like; PDB: 1P22_A 2OVP_B 2OVR_B 2OVQ_B 1FS1_A 1FS2_C 1FQV_I 1LDK_E 2AST_B 2ASS_B

Probab=96.97  E-value=0.00019  Score=44.13  Aligned_cols=29  Identities=14%  Similarity=-0.112  Sum_probs=24.7

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGGVK   34 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~   34 (374)
                      ..||+|++.+||+||+..|..+++.||..
T Consensus         2 ~~LP~Eil~~If~~L~~~dl~~~~~vcr~   30 (47)
T PF12937_consen    2 SSLPDEILLEIFSYLDPRDLLRLSLVCRR   30 (47)
T ss_dssp             CCS-HHHHHHHHTTS-HHHHHHHTTSSHH
T ss_pred             hHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999943

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=96.92  E-value=0.00031  Score=62.27  Aligned_cols=71  Identities=23%  Similarity=0.230  Sum_probs=43.4

Q ss_pred             HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCC
Q 017279          259 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS  338 (374)
Q Consensus       259 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~  338 (374)
                      +..+|+|+.|+++++. ++...-..+...                  ..+++|.+.. +++.... ..++      ....
T Consensus       270 f~~L~~L~~lnlsnN~-i~~i~~~aFe~~------------------a~l~eL~L~~-N~l~~v~-~~~f------~~ls  322 (498)
T KOG4237|consen  270 FKKLPNLRKLNLSNNK-ITRIEDGAFEGA------------------AELQELYLTR-NKLEFVS-SGMF------QGLS  322 (498)
T ss_pred             HhhcccceEeccCCCc-cchhhhhhhcch------------------hhhhhhhcCc-chHHHHH-HHhh------hccc
Confidence            4457888888888774 554333333332                  5778888876 4443221 1222      4567


Q ss_pred             CCceEEecCCcccccccce
Q 017279          339 GRHSLVMSGCLNLTSVHCV  357 (374)
Q Consensus       339 ~L~~L~ls~C~~l~~~~~~  357 (374)
                      .|+.|++.+. .||.+.+.
T Consensus       323 ~L~tL~L~~N-~it~~~~~  340 (498)
T KOG4237|consen  323 GLKTLSLYDN-QITTVAPG  340 (498)
T ss_pred             cceeeeecCC-eeEEEecc
Confidence            8899999998 47665543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=96.90  E-value=0.0012  Score=58.96  Aligned_cols=41  Identities=20%  Similarity=0.245  Sum_probs=31.7

Q ss_pred             cccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279          301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~  350 (374)
                      ++..+.+|+.|++.++ .+.     .   --|.+++|++|++|+++|.+.
T Consensus       500 ~l~nm~nL~tLDL~nN-dlq-----~---IPp~LgnmtnL~hLeL~gNpf  540 (565)
T KOG0472|consen  500 GLKNMRNLTTLDLQNN-DLQ-----Q---IPPILGNMTNLRHLELDGNPF  540 (565)
T ss_pred             HhhhhhhcceeccCCC-chh-----h---CChhhccccceeEEEecCCcc
Confidence            5778899999999873 332     1   224679999999999999874

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=96.90  E-value=9.8e-05  Score=70.35  Aligned_cols=33  Identities=33%  Similarity=0.314  Sum_probs=17.2

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG  246 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  246 (374)
                      ++.|+.|+++++. +++.  . ....|++|++|||++
T Consensus       186 l~ale~LnLshNk-~~~v--~-~Lr~l~~LkhLDlsy  218 (1096)
T KOG1859|consen  186 LPALESLNLSHNK-FTKV--D-NLRRLPKLKHLDLSY  218 (1096)
T ss_pred             HHHhhhhccchhh-hhhh--H-HHHhccccccccccc
Confidence            4566666666533 3332  1 223456666666665

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.89  E-value=0.0015  Score=34.30  Aligned_cols=24  Identities=54%  Similarity=0.933  Sum_probs=15.2

Q ss_pred             CCCCceEecCCCCCCCHHHHHHHH
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLA  285 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~  285 (374)
                      ||+|++|++++|.+++|.++..++
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            456666666666666666666554

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=96.69  E-value=0.0033  Score=62.63  Aligned_cols=11  Identities=9%  Similarity=0.214  Sum_probs=6.5

Q ss_pred             CCCCEEecCCC
Q 017279          132 HDLQDLDLSKS  142 (374)
Q Consensus       132 ~~L~~L~l~~~  142 (374)
                      ++|++|+++++
T Consensus       220 ~nL~~L~Ls~N  230 (754)
T PRK15370        220 GNIKTLYANSN  230 (754)
T ss_pred             cCCCEEECCCC
Confidence            35666666654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=96.64  E-value=0.0011  Score=56.82  Aligned_cols=127  Identities=22%  Similarity=0.221  Sum_probs=78.9

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      ..|++++++++ .++.  +..-.+-.|.++.|+++. +++...+-   ...+++|++|+|++..    -..+..+-..+-
T Consensus       284 q~LtelDLS~N-~I~~--iDESvKL~Pkir~L~lS~-N~i~~v~n---La~L~~L~~LDLS~N~----Ls~~~Gwh~KLG  352 (490)
T KOG1259|consen  284 QELTELDLSGN-LITQ--IDESVKLAPKLRRLILSQ-NRIRTVQN---LAELPQLQLLDLSGNL----LAECVGWHLKLG  352 (490)
T ss_pred             hhhhhcccccc-chhh--hhhhhhhccceeEEeccc-cceeeehh---hhhcccceEeecccch----hHhhhhhHhhhc
Confidence            45778888875 3321  223334468999999987 34443221   2347899999998832    233444444567


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++++|.+..+. +  +.+..+. .+-+|..|++++++.-.-+.+..+.. +|-|+++.+.+++
T Consensus       353 NIKtL~La~N~-i--E~LSGL~-KLYSLvnLDl~~N~Ie~ldeV~~IG~-LPCLE~l~L~~NP  410 (490)
T KOG1259|consen  353 NIKTLKLAQNK-I--ETLSGLR-KLYSLVNLDLSSNQIEELDEVNHIGN-LPCLETLRLTGNP  410 (490)
T ss_pred             CEeeeehhhhh-H--hhhhhhH-hhhhheeccccccchhhHHHhccccc-ccHHHHHhhcCCC
Confidence            88889888743 2  1222222 34578899999854323445555553 8889999988876

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.51  E-value=0.00077  Score=57.15  Aligned_cols=38  Identities=24%  Similarity=0.283  Sum_probs=16.7

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV  248 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  248 (374)
                      |.+|++|.|..+. +.+.+-....+++|+|+.|-|..++
T Consensus        62 CtrLkElYLRkN~-I~sldEL~YLknlpsLr~LWL~ENP   99 (388)
T KOG2123|consen   62 CTRLKELYLRKNC-IESLDELEYLKNLPSLRTLWLDENP   99 (388)
T ss_pred             HHHHHHHHHHhcc-cccHHHHHHHhcCchhhhHhhccCC
Confidence            5555555554322 3332222333445555555555433

>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily

Probab=96.47  E-value=0.0045  Score=32.46  Aligned_cols=24  Identities=63%  Similarity=1.142  Sum_probs=17.1

Q ss_pred             CCCCCeeecCCCCCCCHHHHHHHH
Q 017279          236 CPDLRSLDLCGCVCITDDSVIALA  259 (374)
Q Consensus       236 ~~~L~~L~l~~~~~l~~~~l~~l~  259 (374)
                      ||+|++|++++|..+++.++..+.
T Consensus         1 c~~L~~L~l~~C~~itD~gl~~l~   24 (26)
T smart00367        1 CPNLRELDLSGCTNITDEGLQALA   24 (26)
T ss_pred             CCCCCEeCCCCCCCcCHHHHHHHh
Confidence            467777777777777777776654

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=96.36  E-value=0.00018  Score=47.10  Aligned_cols=38  Identities=21%  Similarity=0.217  Sum_probs=22.9

Q ss_pred             CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      .+++|++|++++ +.++.....       .+..+++|+.|++++|.
T Consensus        23 ~l~~L~~L~l~~-N~l~~i~~~-------~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen   23 NLPNLETLDLSN-NNLTSIPPD-------AFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TGTTESEEEETS-SSESEEETT-------TTTTSTTESEEEETSSS
T ss_pred             CCCCCCEeEccC-CccCccCHH-------HHcCCCCCCEEeCcCCc
Confidence            347777777776 445421111       23567788888888774

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=96.24  E-value=0.0044  Score=37.30  Aligned_cols=37  Identities=22%  Similarity=0.410  Sum_probs=27.5

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCC-ccCCCCCceEEecCCccccc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFPA-LHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~-l~~~~~L~~L~ls~C~~l~~  353 (374)
                      ++|++|++++ +++++         +|. +.+|++|+.|++++|. +++
T Consensus         1 ~~L~~L~l~~-N~i~~---------l~~~l~~l~~L~~L~l~~N~-i~~   38 (44)
T PF12799_consen    1 KNLEELDLSN-NQITD---------LPPELSNLPNLETLNLSNNP-ISD   38 (44)
T ss_dssp             TT-SEEEETS-SS-SS---------HGGHGTTCTTSSEEEETSSC-CSB
T ss_pred             CcceEEEccC-CCCcc---------cCchHhCCCCCCEEEecCCC-CCC
Confidence            5899999999 57774         222 5789999999999995 665

...

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.89  E-value=0.0015  Score=61.56  Aligned_cols=198  Identities=28%  Similarity=0.325  Sum_probs=106.8

Q ss_pred             CcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCCCCCCHHHHHHHHhcCC----CCcEEeecCCCCCCHHH---H
Q 017279          107 LQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAHGCP----NLTRLNISGCTSFSDHA---L  176 (374)
Q Consensus       107 L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~----~L~~L~L~~~~~~~~~~---~  176 (374)
                      +..+.+.  .+.+.+.....+.   ...+.|+.|+++++ .+++.+...+.+..+    .|++|++..| .++..+   +
T Consensus        89 l~~L~L~--~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n-~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l  164 (478)
T KOG4308|consen   89 LLHLSLA--NNRLGDRGAEELAQALKTLPTLGQLDLSGN-NLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPL  164 (478)
T ss_pred             HHHhhhh--hCccccchHHHHHHHhcccccHhHhhcccC-CCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHH
Confidence            5556666  3344443333333   33566777888875 555776666655443    3455566554 333333   2


Q ss_pred             HHHHhcCCCCcEEEcCCCccCccHHHHHHHH---h----cCCCCCEEeccCCCCCCHHHHHHH---HhcCCC-CCeeecC
Q 017279          177 AYLCGFCRKLKILNLCGCVKAATDYALQAIG---R----NCNQLQSLNLGWCEDVGDVGVMNL---AYGCPD-LRSLDLC  245 (374)
Q Consensus       177 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~----~~~~L~~L~l~~~~~~~~~~~~~l---~~~~~~-L~~L~l~  245 (374)
                      .......+.++.+++..+.  +.......+.   +    ...++++|++.+|. +++.....+   ....+. +..|++.
T Consensus       165 ~~~L~~~~~l~~l~l~~n~--l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~-~t~~~c~~l~~~l~~~~~~~~el~l~  241 (478)
T KOG4308|consen  165 AAVLEKNEHLTELDLSLNG--LIELGLLVLSQALESAASPLSSLETLKLSRCG-VTSSSCALLDEVLASGESLLRELDLA  241 (478)
T ss_pred             HHHHhcccchhHHHHHhcc--cchhhhHHHhhhhhhhhcccccHHHHhhhhcC-cChHHHHHHHHHHhccchhhHHHHHH
Confidence            2223335667777776543  2222222211   1    34567777777654 444433333   223344 5557777


Q ss_pred             CCCCCCHHHHHHHHhcC----CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCH
Q 017279          246 GCVCITDDSVIALANGC----PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTP  321 (374)
Q Consensus       246 ~~~~l~~~~l~~l~~~~----~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~  321 (374)
                      . +.+.+.++..+.+.+    +.++++++..|. +++.+...+.....              .++.++++.++. +.+++
T Consensus       242 ~-n~l~d~g~~~L~~~l~~~~~~l~~l~l~~ns-i~~~~~~~L~~~l~--------------~~~~l~~l~l~~-n~l~~  304 (478)
T KOG4308|consen  242 S-NKLGDVGVEKLLPCLSVLSETLRVLDLSRNS-ITEKGVRDLAEVLV--------------SCRQLEELSLSN-NPLTD  304 (478)
T ss_pred             h-cCcchHHHHHHHHHhcccchhhhhhhhhcCC-ccccchHHHHHHHh--------------hhHHHHHhhccc-Ccccc
Confidence            6 466666665555543    345777777775 66666666655421              346788888877 55666


Q ss_pred             HHHHHHH
Q 017279          322 PAVQALC  328 (374)
Q Consensus       322 ~~l~~l~  328 (374)
                      ...+.+.
T Consensus       305 ~~~~~~~  311 (478)
T KOG4308|consen  305 YGVELLL  311 (478)
T ss_pred             HHHHHHH
Confidence            5554444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.75  E-value=0.0035  Score=52.73  Aligned_cols=89  Identities=25%  Similarity=0.275  Sum_probs=48.7

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCC-HHHHHHHHhc
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT-DDSVIALANG  261 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~-~~~l~~l~~~  261 (374)
                      +|+|++|.++.... -....+..++..+|+|++|+++++. +.+..-..-.+.+++|..|++.+|.... +.--..++.-
T Consensus        64 Lp~LkkL~lsdn~~-~~~~~l~vl~e~~P~l~~l~ls~Nk-i~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l  141 (260)
T KOG2739|consen   64 LPKLKKLELSDNYR-RVSGGLEVLAEKAPNLKVLNLSGNK-IKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL  141 (260)
T ss_pred             cchhhhhcccCCcc-cccccceehhhhCCceeEEeecCCc-cccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence            56777777765422 1223455566667777777777643 3332112223345677788887764221 1111233444


Q ss_pred             CCCCceEecCCC
Q 017279          262 CPHLRSLGLYYC  273 (374)
Q Consensus       262 ~~~L~~L~l~~~  273 (374)
                      +|+|+.|+-..+
T Consensus       142 l~~L~~LD~~dv  153 (260)
T KOG2739|consen  142 LPSLKYLDGCDV  153 (260)
T ss_pred             hhhhcccccccc
Confidence            677777765544

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.74  E-value=0.0052  Score=52.28  Aligned_cols=56  Identities=27%  Similarity=0.344  Sum_probs=28.5

Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .+.++|+.++|. ++|.   .++..+|.|+.|.++- +.|+  .+..+. .|.+|+.|.|..+.
T Consensus        19 ~~vkKLNcwg~~-L~DI---sic~kMp~lEVLsLSv-NkIs--sL~pl~-rCtrLkElYLRkN~   74 (388)
T KOG2123|consen   19 ENVKKLNCWGCG-LDDI---SICEKMPLLEVLSLSV-NKIS--SLAPLQ-RCTRLKELYLRKNC   74 (388)
T ss_pred             HHhhhhcccCCC-ccHH---HHHHhcccceeEEeec-cccc--cchhHH-HHHHHHHHHHHhcc
Confidence            345556666643 4442   2344556666666665 3343  122333 36666666665543

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=95.67  E-value=0.0012  Score=63.37  Aligned_cols=103  Identities=25%  Similarity=0.217  Sum_probs=55.2

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh-cCCCCCEEeccCCCCCCHHHHHHHHhc
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCEDVGDVGVMNLAYG  235 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~~~~~~~~~l~~~  235 (374)
                      ++.|+.|+|+. +.+++..   ....|+.|++|||++..  +..  +..+.. .| +|+.|.++++. ++.  +..+ ..
T Consensus       186 l~ale~LnLsh-Nk~~~v~---~Lr~l~~LkhLDlsyN~--L~~--vp~l~~~gc-~L~~L~lrnN~-l~t--L~gi-e~  252 (1096)
T KOG1859|consen  186 LPALESLNLSH-NKFTKVD---NLRRLPKLKHLDLSYNC--LRH--VPQLSMVGC-KLQLLNLRNNA-LTT--LRGI-EN  252 (1096)
T ss_pred             HHHhhhhccch-hhhhhhH---HHHhcccccccccccch--hcc--ccccchhhh-hheeeeecccH-HHh--hhhH-Hh
Confidence            46778888876 4555543   23457888888887733  211  111111 13 37777777643 221  2222 24


Q ss_pred             CCCCCeeecCCCCCCCHHH-HHHHHhcCCCCceEecCCCC
Q 017279          236 CPDLRSLDLCGCVCITDDS-VIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       236 ~~~L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +.+|+.||+++ +.+.+.. +.-+. .+..|+.|++.+++
T Consensus       253 LksL~~LDlsy-Nll~~hseL~pLw-sLs~L~~L~LeGNP  290 (1096)
T KOG1859|consen  253 LKSLYGLDLSY-NLLSEHSELEPLW-SLSSLIVLWLEGNP  290 (1096)
T ss_pred             hhhhhccchhH-hhhhcchhhhHHH-HHHHHHHHhhcCCc
Confidence            56788888887 3343221 11111 24457777777765

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=95.58  E-value=0.0059  Score=51.40  Aligned_cols=63  Identities=33%  Similarity=0.464  Sum_probs=27.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHH-HHHHHHhcCCCCcEEEcCCCc
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH-ALAYLCGFCRKLKILNLCGCV  195 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~l~~~~~~L~~L~L~~~~  195 (374)
                      +++|++|.++.+..-...++..++..+|+|++|++++ +.+.+. .+.. ...+++|..|++.+|.
T Consensus        64 Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~-Nki~~lstl~p-l~~l~nL~~Ldl~n~~  127 (260)
T KOG2739|consen   64 LPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSG-NKIKDLSTLRP-LKELENLKSLDLFNCS  127 (260)
T ss_pred             cchhhhhcccCCcccccccceehhhhCCceeEEeecC-Cccccccccch-hhhhcchhhhhcccCC
Confidence            4455555555542222223444444445555555554 233321 1111 1234455555555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=95.57  E-value=0.055  Score=54.12  Aligned_cols=54  Identities=20%  Similarity=0.158  Sum_probs=30.4

Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++. ++.  +...  -+++|+.|++++| .++.  +..-  ..++|+.|++++|.
T Consensus       325 ~sL~~L~Ls~N~-Lt~--LP~~--l~~sL~~L~Ls~N-~L~~--LP~~--lp~~L~~LdLs~N~  378 (754)
T PRK15370        325 PGLKTLEAGENA-LTS--LPAS--LPPELQVLDVSKN-QITV--LPET--LPPTITTLDVSRNA  378 (754)
T ss_pred             ccceeccccCCc-ccc--CChh--hcCcccEEECCCC-CCCc--CChh--hcCCcCEEECCCCc
Confidence            467777776643 322  1111  1367888888885 3442  1111  13678888888875

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=95.45  E-value=0.00031  Score=55.14  Aligned_cols=131  Identities=20%  Similarity=0.173  Sum_probs=59.2

Q ss_pred             cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (374)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  182 (374)
                      ...++++|.++  .+.++.- ...++. ..+|+.|++.++ .+.+ ...++ +.+|+|+.|+++-. .+.  .++.-++.
T Consensus        31 ~~s~ITrLtLS--HNKl~~v-ppnia~-l~nlevln~~nn-qie~-lp~~i-ssl~klr~lnvgmn-rl~--~lprgfgs  100 (264)
T KOG0617|consen   31 NMSNITRLTLS--HNKLTVV-PPNIAE-LKNLEVLNLSNN-QIEE-LPTSI-SSLPKLRILNVGMN-RLN--ILPRGFGS  100 (264)
T ss_pred             chhhhhhhhcc--cCceeec-CCcHHH-hhhhhhhhcccc-hhhh-cChhh-hhchhhhheecchh-hhh--cCccccCC
Confidence            34556666666  3332211 112222 456777777664 2221 11222 33677777776531 111  01222345


Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV  248 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  248 (374)
                      +|.|+.|++.+..  .+...+..-+-.+..|+.|.++.++ +  +.+..-...+.+|+.|.+..+.
T Consensus       101 ~p~levldltynn--l~e~~lpgnff~m~tlralyl~dnd-f--e~lp~dvg~lt~lqil~lrdnd  161 (264)
T KOG0617|consen  101 FPALEVLDLTYNN--LNENSLPGNFFYMTTLRALYLGDND-F--EILPPDVGKLTNLQILSLRDND  161 (264)
T ss_pred             Cchhhhhhccccc--cccccCCcchhHHHHHHHHHhcCCC-c--ccCChhhhhhcceeEEeeccCc
Confidence            6777777777632  3444333322234455555555432 1  1111112234566666666643

>PLN03150 hypothetical protein; Provisional

Probab=95.30  E-value=0.028  Score=55.37  Aligned_cols=12  Identities=33%  Similarity=0.401  Sum_probs=6.1

Q ss_pred             CCCCceEecCCC
Q 017279          262 CPHLRSLGLYYC  273 (374)
Q Consensus       262 ~~~L~~L~l~~~  273 (374)
                      +++|+.|+++++
T Consensus       465 l~~L~~LdLs~N  476 (623)
T PLN03150        465 ITSLEVLDLSYN  476 (623)
T ss_pred             CCCCCEEECCCC
Confidence            455555555544

>PF00646 F-box: F-box domain; InterPro: IPR001810 The F-box domain was first described as a sequence motif found in cyclin-F that interacts with the protein SKP1 [, ]

Probab=95.22  E-value=0.0055  Score=37.65  Aligned_cols=28  Identities=11%  Similarity=-0.099  Sum_probs=23.1

Q ss_pred             CcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279            7 NLSSEDLNLCFEKMMMAGAGADRAGGVK   34 (374)
Q Consensus         7 ~lp~e~~~~i~~~l~~~~~~~~~~~~~~   34 (374)
                      .||+|++.+||++|+..++.+++.||..
T Consensus         5 ~LP~~il~~Il~~l~~~~~~~l~~vsk~   32 (48)
T PF00646_consen    5 DLPDEILQEILSYLDPKDLLRLSLVSKR   32 (48)
T ss_dssp             HS-HHHHHHHHHTS-HHHHHHHCTT-HH
T ss_pred             HCCHHHHHHHHHHCcHHHHHHHHHHhhH
Confidence            6999999999999999999999999943

This relatively conserved structural motif is present in numerous proteins and serves as a link between a target protein and a ubiquitin-conjugating enzyme. The SCF complex (e.g., Skp1-Cullin-F-box) plays a similar role as an E3 ligase in the ubiquitin protein degradation pathway [, ]. Different F-box proteins as a part of SCF complex recruit particular substrates for ubiquitination through specific protein-protein interaction domains. Many mammalian F-box domains contain leucine-rich or WD-40 repeats (IPR001680 from INTERPRO). However, several F-box proteins either have other previously described domains such as Sec7 domain found in FBS protein or do not contain defined protein-protein interaction domains or motifs.; GO: 0005515 protein binding; PDB: 2E32_A 2E31_A 3V7D_B 1NEX_B 3MKS_D 3L2O_B.

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=95.13  E-value=0.021  Score=53.87  Aligned_cols=181  Identities=27%  Similarity=0.309  Sum_probs=93.2

Q ss_pred             HHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhC----CCCCEEecCCCCCCCHHHHHHHHh---cCCCCcEEeecCCC
Q 017279           97 VLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC----HDLQDLDLSKSFKLSDRSLYALAH---GCPNLTRLNISGCT  169 (374)
Q Consensus        97 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~  169 (374)
                      +.......+.|+.|+++  .+.+.+.....+....    ..+++|++..| .++.++...++.   ....++.++++.+ 
T Consensus       107 l~~~l~t~~~L~~L~l~--~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c-~l~~~g~~~l~~~L~~~~~l~~l~l~~n-  182 (478)
T KOG4308|consen  107 LAQALKTLPTLGQLDLS--GNNLGDEGARLLCEGLRLPQCLLQTLELVSC-SLTSEGAAPLAAVLEKNEHLTELDLSLN-  182 (478)
T ss_pred             HHHHhcccccHhHhhcc--cCCCccHhHHHHHhhcccchHHHHHHHhhcc-cccccchHHHHHHHhcccchhHHHHHhc-
Confidence            44445556677777777  4455555554444332    23455666664 444444333332   2456666666653 


Q ss_pred             CCCHHHHHHHHh-------cCCCCcEEEcCCCccCccHHHHHHHH---hcCCC-CCEEeccCCCCCCHHHHHHHHhcC--
Q 017279          170 SFSDHALAYLCG-------FCRKLKILNLCGCVKAATDYALQAIG---RNCNQ-LQSLNLGWCEDVGDVGVMNLAYGC--  236 (374)
Q Consensus       170 ~~~~~~~~~l~~-------~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~--  236 (374)
                      .+...+...+..       ...++++|.+.+|.  ++...+..+.   ...++ +..|++..+ .+.+.++..+.+.+  
T Consensus       183 ~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~--~t~~~c~~l~~~l~~~~~~~~el~l~~n-~l~d~g~~~L~~~l~~  259 (478)
T KOG4308|consen  183 GLIELGLLVLSQALESAASPLSSLETLKLSRCG--VTSSSCALLDEVLASGESLLRELDLASN-KLGDVGVEKLLPCLSV  259 (478)
T ss_pred             ccchhhhHHHhhhhhhhhcccccHHHHhhhhcC--cChHHHHHHHHHHhccchhhHHHHHHhc-CcchHHHHHHHHHhcc
Confidence            332333222211       23467777777765  3444433332   23333 555666653 35555555554433  


Q ss_pred             --CCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHHHHh
Q 017279          237 --PDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYSLAQ  286 (374)
Q Consensus       237 --~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~l~~  286 (374)
                        +.++.+++..| .+++.+...+   ...+++++.+.++.++ +.+.+...+..
T Consensus       260 ~~~~l~~l~l~~n-si~~~~~~~L~~~l~~~~~l~~l~l~~n~-l~~~~~~~~~~  312 (478)
T KOG4308|consen  260 LSETLRVLDLSRN-SITEKGVRDLAEVLVSCRQLEELSLSNNP-LTDYGVELLLE  312 (478)
T ss_pred             cchhhhhhhhhcC-CccccchHHHHHHHhhhHHHHHhhcccCc-cccHHHHHHHH
Confidence              34577777774 4554444333   3346677777777665 66555554443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=95.10  E-value=0.0072  Score=48.95  Aligned_cols=108  Identities=20%  Similarity=0.260  Sum_probs=58.3

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCH-HHHHHHHhc
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD-DSVIALANG  261 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~-~~l~~l~~~  261 (374)
                      ..+...++|++..  +   .-...+...+.|.+|.+.++. ++..+ ..+..-+|+|+.|.+.++ .+.. ..+..+. .
T Consensus        41 ~d~~d~iDLtdNd--l---~~l~~lp~l~rL~tLll~nNr-It~I~-p~L~~~~p~l~~L~LtnN-si~~l~dl~pLa-~  111 (233)
T KOG1644|consen   41 LDQFDAIDLTDND--L---RKLDNLPHLPRLHTLLLNNNR-ITRID-PDLDTFLPNLKTLILTNN-SIQELGDLDPLA-S  111 (233)
T ss_pred             ccccceecccccc--h---hhcccCCCccccceEEecCCc-ceeec-cchhhhccccceEEecCc-chhhhhhcchhc-c
Confidence            3456667776522  1   111123356778888887643 43321 122334588888888884 3432 2233444 3


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ  315 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  315 (374)
                      ||+|++|.+-+++ ++...-.....               +..+|+|+.|++.+
T Consensus       112 ~p~L~~Ltll~Np-v~~k~~YR~yv---------------l~klp~l~~LDF~k  149 (233)
T KOG1644|consen  112 CPKLEYLTLLGNP-VEHKKNYRLYV---------------LYKLPSLRTLDFQK  149 (233)
T ss_pred             CCccceeeecCCc-hhcccCceeEE---------------EEecCcceEeehhh
Confidence            8888888887765 33211111110               33568888888865

>smart00256 FBOX A Receptor for Ubiquitination Targets

Probab=94.95  E-value=0.0022  Score=37.86  Aligned_cols=27  Identities=19%  Similarity=0.011  Sum_probs=24.6

Q ss_pred             cCHHHHHHHHHHHHHhccccCCCCccc
Q 017279            8 LSSEDLNLCFEKMMMAGAGADRAGGVK   34 (374)
Q Consensus         8 lp~e~~~~i~~~l~~~~~~~~~~~~~~   34 (374)
                      ||+|++.+||++++..+..+++.||..
T Consensus         1 lP~~ll~~I~~~l~~~d~~~~~~vc~~   27 (41)
T smart00256        1 LPDEILEEILSKLPPKDLLRLRKVSRR   27 (41)
T ss_pred             CCHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            799999999999999999999988843

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=94.91  E-value=0.00072  Score=44.18  Aligned_cols=10  Identities=30%  Similarity=0.514  Sum_probs=5.2

Q ss_pred             CCCcEEecCC
Q 017279          306 EGLQSLNISQ  315 (374)
Q Consensus       306 ~~L~~L~l~~  315 (374)
                      ++|++|++++
T Consensus        49 ~~L~~L~l~~   58 (61)
T PF13855_consen   49 PNLRYLDLSN   58 (61)
T ss_dssp             TTESEEEETS
T ss_pred             CCCCEEeCcC
Confidence            4555555554

...

>PLN03150 hypothetical protein; Provisional

Probab=94.89  E-value=0.046  Score=53.86  Aligned_cols=108  Identities=17%  Similarity=0.103  Sum_probs=64.5

Q ss_pred             CCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCC
Q 017279          134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL  213 (374)
Q Consensus       134 L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L  213 (374)
                      ++.|+|+++ .+.......+. .+++|+.|+|+++ .+.. .++.....+++|+.|+|+++.  +.... ......+++|
T Consensus       420 v~~L~L~~n-~L~g~ip~~i~-~L~~L~~L~Ls~N-~l~g-~iP~~~~~l~~L~~LdLs~N~--lsg~i-P~~l~~L~~L  492 (623)
T PLN03150        420 IDGLGLDNQ-GLRGFIPNDIS-KLRHLQSINLSGN-SIRG-NIPPSLGSITSLEVLDLSYNS--FNGSI-PESLGQLTSL  492 (623)
T ss_pred             EEEEECCCC-CccccCCHHHh-CCCCCCEEECCCC-cccC-cCChHHhCCCCCCEEECCCCC--CCCCC-chHHhcCCCC
Confidence            677888875 44433333343 4789999999874 3332 133334568899999998854  33322 2333468899


Q ss_pred             CEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCC
Q 017279          214 QSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVC  249 (374)
Q Consensus       214 ~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~  249 (374)
                      +.|+++++. +.......+.....++..+++.++..
T Consensus       493 ~~L~Ls~N~-l~g~iP~~l~~~~~~~~~l~~~~N~~  527 (623)
T PLN03150        493 RILNLNGNS-LSGRVPAALGGRLLHRASFNFTDNAG  527 (623)
T ss_pred             CEEECcCCc-ccccCChHHhhccccCceEEecCCcc
Confidence            999998754 43322222322234667788887543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=94.68  E-value=0.1  Score=47.07  Aligned_cols=107  Identities=22%  Similarity=0.143  Sum_probs=54.4

Q ss_pred             hCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       130 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      .+++|..|+++++ .+.+- ...+. ....|+.|+++.. .|..  .+........|+.+-.+...  +...... =...
T Consensus       433 ~l~kLt~L~L~NN-~Ln~L-P~e~~-~lv~Lq~LnlS~N-rFr~--lP~~~y~lq~lEtllas~nq--i~~vd~~-~l~n  503 (565)
T KOG0472|consen  433 QLQKLTFLDLSNN-LLNDL-PEEMG-SLVRLQTLNLSFN-RFRM--LPECLYELQTLETLLASNNQ--IGSVDPS-GLKN  503 (565)
T ss_pred             hhhcceeeecccc-hhhhc-chhhh-hhhhhheeccccc-cccc--chHHHhhHHHHHHHHhcccc--ccccChH-Hhhh
Confidence            3677888888875 23221 11111 2456888888763 3332  22222222333333333211  1111111 1234


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV  248 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  248 (374)
                      +.+|..|++.+++ +  ..+..+.+.|.+|++|.++|++
T Consensus       504 m~nL~tLDL~nNd-l--q~IPp~LgnmtnL~hLeL~gNp  539 (565)
T KOG0472|consen  504 MRNLTTLDLQNND-L--QQIPPILGNMTNLRHLELDGNP  539 (565)
T ss_pred             hhhcceeccCCCc-h--hhCChhhccccceeEEEecCCc
Confidence            6788888887643 2  2234455678888888888854

>PLN03215 ascorbic acid mannose pathway regulator 1; Provisional

Probab=94.41  E-value=0.022  Score=51.35  Aligned_cols=38  Identities=24%  Similarity=0.618  Sum_probs=34.1

Q ss_pred             CccCCCCHHHHHHHhcCC-CccchhhhcccchhHHHhhh
Q 017279           41 TEWKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        41 ~~~~~Lp~eil~~If~~L-~~~~l~~~~~vc~~w~~~~~   78 (374)
                      ..|..||.|++..|..+| ..-|+++.+.||+.||.++.
T Consensus         2 ~~Ws~Lp~dll~~i~~~l~~~~d~~~~~~vC~sWr~a~~   40 (373)
T PLN03215          2 ADWSTLPEELLHMIAGRLFSNVELKRFRSICRSWRSSVS   40 (373)
T ss_pred             CChhhCCHHHHHHHHhhCCcHHHHHHHHhhhhhHHHhcc
Confidence            479999999999999999 66689999999999998754

>KOG2997 consensus F-box protein FBX9 [General function prediction only]

Probab=94.23  E-value=0.016  Score=50.03  Aligned_cols=40  Identities=28%  Similarity=0.389  Sum_probs=33.3

Q ss_pred             cCCccCCCCHHHHHHHhcCC-----CccchhhhcccchhHHHhhh
Q 017279           39 VITEWKDIPMELLLRILSLV-----DEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L-----~~~~l~~~~~vc~~w~~~~~   78 (374)
                      +...|..||+|++..||..+     +.+.+-++|.|||.|+..+.
T Consensus       103 ~~~~~~~LPdEvLm~I~~~vv~~~~d~rsL~~~s~vCr~F~~~~R  147 (366)
T KOG2997|consen  103 ELISISVLPDEVLMRIFRWVVSSLLDLRSLEQLSLVCRGFYKCAR  147 (366)
T ss_pred             hhhhhhhCCHHHHHHHHHHHHhhhcchhhHHHhHhhHHHHHHHHc
Confidence            34457899999999999964     67889999999999997653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=93.90  E-value=0.00026  Score=55.55  Aligned_cols=149  Identities=23%  Similarity=0.193  Sum_probs=75.9

Q ss_pred             CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      +.+|.+++....   .++.-.....+|+.|++.  ++.+.+-. ..+ ..++.|+.|++..+ .+..  +..-...+|.|
T Consensus        35 ITrLtLSHNKl~---~vppnia~l~nlevln~~--nnqie~lp-~~i-ssl~klr~lnvgmn-rl~~--lprgfgs~p~l  104 (264)
T KOG0617|consen   35 ITRLTLSHNKLT---VVPPNIAELKNLEVLNLS--NNQIEELP-TSI-SSLPKLRILNVGMN-RLNI--LPRGFGSFPAL  104 (264)
T ss_pred             hhhhhcccCcee---ecCCcHHHhhhhhhhhcc--cchhhhcC-hhh-hhchhhhheecchh-hhhc--CccccCCCchh
Confidence            445555544322   122223356678888887  55543321 222 33677888777654 1110  11111236888


Q ss_pred             cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR  240 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  240 (374)
                      +.|++.+ +++....++.-+-.+..|+.|.++..+.    +.+..-...+.+|+.|.+..++-++   +..-...+..|+
T Consensus       105 evldlty-nnl~e~~lpgnff~m~tlralyl~dndf----e~lp~dvg~lt~lqil~lrdndll~---lpkeig~lt~lr  176 (264)
T KOG0617|consen  105 EVLDLTY-NNLNENSLPGNFFYMTTLRALYLGDNDF----EILPPDVGKLTNLQILSLRDNDLLS---LPKEIGDLTRLR  176 (264)
T ss_pred             hhhhccc-cccccccCCcchhHHHHHHHHHhcCCCc----ccCChhhhhhcceeEEeeccCchhh---CcHHHHHHHHHH
Confidence            8888876 3444333322222245567777766332    2333333356777888777644222   222223346688


Q ss_pred             eeecCCC
Q 017279          241 SLDLCGC  247 (374)
Q Consensus       241 ~L~l~~~  247 (374)
                      +|.+.|+
T Consensus       177 elhiqgn  183 (264)
T KOG0617|consen  177 ELHIQGN  183 (264)
T ss_pred             HHhcccc
Confidence            8888884

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.79  E-value=0.071  Score=48.87  Aligned_cols=72  Identities=21%  Similarity=0.261  Sum_probs=46.1

Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      .|++++.|++++|.  +.  .++   .-.++|+.|.+++|..++.  +....  .++|+.|++++|..+.     .   -
T Consensus        50 ~~~~l~~L~Is~c~--L~--sLP---~LP~sLtsL~Lsnc~nLts--LP~~L--P~nLe~L~Ls~Cs~L~-----s---L  110 (426)
T PRK15386         50 EARASGRLYIKDCD--IE--SLP---VLPNELTEITIENCNNLTT--LPGSI--PEGLEKLTVCHCPEIS-----G---L  110 (426)
T ss_pred             HhcCCCEEEeCCCC--Cc--ccC---CCCCCCcEEEccCCCCccc--CCchh--hhhhhheEccCccccc-----c---c
Confidence            47899999999874  22  122   2234699999988766432  11111  2589999999986553     1   1


Q ss_pred             CCCCceEecCC
Q 017279          262 CPHLRSLGLYY  272 (374)
Q Consensus       262 ~~~L~~L~l~~  272 (374)
                      .+.|+.|.+..
T Consensus       111 P~sLe~L~L~~  121 (426)
T PRK15386        111 PESVRSLEIKG  121 (426)
T ss_pred             ccccceEEeCC
Confidence            34688888764

>PRK15386 type III secretion protein GogB; Provisional

Probab=93.62  E-value=0.17  Score=46.41  Aligned_cols=126  Identities=20%  Similarity=0.243  Sum_probs=71.5

Q ss_pred             HHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHH
Q 017279          123 AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA  202 (374)
Q Consensus       123 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~  202 (374)
                      ....+. .+.+++.|++++| .+..  +.   .--++|++|.+++|..++..  +...  .++|++|.+.+|.. +.   
T Consensus        44 a~~r~~-~~~~l~~L~Is~c-~L~s--LP---~LP~sLtsL~Lsnc~nLtsL--P~~L--P~nLe~L~Ls~Cs~-L~---  108 (426)
T PRK15386         44 ITPQIE-EARASGRLYIKDC-DIES--LP---VLPNELTEITIENCNNLTTL--PGSI--PEGLEKLTVCHCPE-IS---  108 (426)
T ss_pred             HHHHHH-HhcCCCEEEeCCC-CCcc--cC---CCCCCCcEEEccCCCCcccC--Cchh--hhhhhheEccCccc-cc---
Confidence            334433 3788999999987 3332  11   11246999999887665321  1111  25899999998753 21   


Q ss_pred             HHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCC
Q 017279          203 LQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNI  276 (374)
Q Consensus       203 ~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i  276 (374)
                           .-.++|+.|++.+.. ...  +..   -.++|+.|.+.++.......+...  -.++|+.|.+.+|..+
T Consensus       109 -----sLP~sLe~L~L~~n~-~~~--L~~---LPssLk~L~I~~~n~~~~~~lp~~--LPsSLk~L~Is~c~~i  169 (426)
T PRK15386        109 -----GLPESVRSLEIKGSA-TDS--IKN---VPNGLTSLSINSYNPENQARIDNL--ISPSLKTLSLTGCSNI  169 (426)
T ss_pred             -----ccccccceEEeCCCC-Ccc--ccc---CcchHhheeccccccccccccccc--cCCcccEEEecCCCcc
Confidence                 123578888886532 221  222   225788888865332211111111  1357999999988743

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=93.39  E-value=0.078  Score=26.96  Aligned_cols=22  Identities=41%  Similarity=0.548  Sum_probs=11.1

Q ss_pred             CCCceEecCCCCCCCHHHHHHHH
Q 017279          263 PHLRSLGLYYCRNITDRAIYSLA  285 (374)
Q Consensus       263 ~~L~~L~l~~~~~i~~~~~~~l~  285 (374)
                      ++|+.|+|++|. ++++++..++
T Consensus         2 ~~L~~L~l~~n~-i~~~g~~~l~   23 (24)
T PF13516_consen    2 PNLETLDLSNNQ-ITDEGASALA   23 (24)
T ss_dssp             TT-SEEE-TSSB-EHHHHHHHHH
T ss_pred             CCCCEEEccCCc-CCHHHHHHhC
Confidence            455566665554 5555555543

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=93.37  E-value=0.12  Score=30.98  Aligned_cols=11  Identities=36%  Similarity=0.754  Sum_probs=4.7

Q ss_pred             CCCCCeeecCC
Q 017279          236 CPDLRSLDLCG  246 (374)
Q Consensus       236 ~~~L~~L~l~~  246 (374)
                      +++|+.|++++
T Consensus        23 l~~L~~L~l~~   33 (44)
T PF12799_consen   23 LPNLETLNLSN   33 (44)
T ss_dssp             CTTSSEEEETS
T ss_pred             CCCCCEEEecC
Confidence            44444444444

...

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=93.10  E-value=0.08  Score=24.47  Aligned_cols=15  Identities=33%  Similarity=0.266  Sum_probs=8.9

Q ss_pred             CCCceEEecCCccccc
Q 017279          338 SGRHSLVMSGCLNLTS  353 (374)
Q Consensus       338 ~~L~~L~ls~C~~l~~  353 (374)
                      ++|+.|++++|. +++
T Consensus         1 ~~L~~L~l~~n~-L~~   15 (17)
T PF13504_consen    1 PNLRTLDLSNNR-LTS   15 (17)
T ss_dssp             TT-SEEEETSS---SS
T ss_pred             CccCEEECCCCC-CCC
Confidence            467888888886 554

...

>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]

Probab=92.99  E-value=0.03  Score=48.84  Aligned_cols=67  Identities=15%  Similarity=0.173  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHhccccCCCCccccCCccCCccCCCC----HHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           11 EDLNLCFEKMMMAGAGADRAGGVKMDGVVITEWKDIP----MELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        11 e~~~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~Lp----~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      |+..++.+.|..-+......  .-......+.+..||    +++...||+||+..+++.+..|||+|+.+...
T Consensus        45 dfv~~ll~~m~hyq~g~v~n--~~rpmLqrDFi~~lP~~gl~hi~e~ilsyld~~sLc~celv~k~W~r~l~d  115 (499)
T KOG0281|consen   45 DFVEHLISRMCHYQHGHINN--YLKPMLQRDFITALPEQGLDHIAENILSYLDALSLCACELVCKEWKRVLSD  115 (499)
T ss_pred             hHHHHHHHHHhhhhhhHHHH--HHHHHHHHHHHHhcccccHHHHHHHHHHhcchhhhhHHHHHHHHHHHHhcc
Confidence            55666666665554433210  111233567889999    99999999999999999999999999988643

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=92.67  E-value=0.24  Score=45.97  Aligned_cols=39  Identities=18%  Similarity=0.220  Sum_probs=25.2

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~  350 (374)
                      +..+++|+.|++++ +.+++.         +.+....+|+.|++++-..
T Consensus       251 ~~~l~~l~~L~~s~-n~i~~i---------~~~~~~~~l~~L~~s~n~~  289 (394)
T COG4886         251 IGNLSNLETLDLSN-NQISSI---------SSLGSLTNLRELDLSGNSL  289 (394)
T ss_pred             hccccccceecccc-cccccc---------ccccccCccCEEeccCccc
Confidence            33457788888888 455532         2235567888888887543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=91.10  E-value=0.18  Score=41.12  Aligned_cols=127  Identities=19%  Similarity=0.135  Sum_probs=75.1

Q ss_pred             cEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCc
Q 017279          187 KILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLR  266 (374)
Q Consensus       187 ~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~  266 (374)
                      +++++.+...    .....+.....+...+++.+++...    ...+.++++|.+|.+.+ +.|+... ..+....|+|+
T Consensus        22 ~e~~LR~lki----p~ienlg~~~d~~d~iDLtdNdl~~----l~~lp~l~rL~tLll~n-NrIt~I~-p~L~~~~p~l~   91 (233)
T KOG1644|consen   22 RELDLRGLKI----PVIENLGATLDQFDAIDLTDNDLRK----LDNLPHLPRLHTLLLNN-NRITRID-PDLDTFLPNLK   91 (233)
T ss_pred             cccccccccc----cchhhccccccccceecccccchhh----cccCCCccccceEEecC-Ccceeec-cchhhhccccc
Confidence            4556655321    2222344445677778887644221    22234678899999998 4565322 23444578999


Q ss_pred             eEecCCCCCCCH-HHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCH--HHHHHHHhhCCCccCCCCCceE
Q 017279          267 SLGLYYCRNITD-RAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTP--PAVQALCDTFPALHTCSGRHSL  343 (374)
Q Consensus       267 ~L~l~~~~~i~~-~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~--~~l~~l~~~~~~l~~~~~L~~L  343 (374)
                      .|.+.++. +.. ..+..++                  .+|+|++|.+-++ .++.  .+..-      -+...|+|+.|
T Consensus        92 ~L~LtnNs-i~~l~dl~pLa------------------~~p~L~~Ltll~N-pv~~k~~YR~y------vl~klp~l~~L  145 (233)
T KOG1644|consen   92 TLILTNNS-IQELGDLDPLA------------------SCPKLEYLTLLGN-PVEHKKNYRLY------VLYKLPSLRTL  145 (233)
T ss_pred             eEEecCcc-hhhhhhcchhc------------------cCCccceeeecCC-chhcccCceeE------EEEecCcceEe
Confidence            99998875 332 2233333                  4589999999884 3432  11111      13578999999


Q ss_pred             EecCCc
Q 017279          344 VMSGCL  349 (374)
Q Consensus       344 ~ls~C~  349 (374)
                      |+.+-.
T Consensus       146 DF~kVt  151 (233)
T KOG1644|consen  146 DFQKVT  151 (233)
T ss_pred             ehhhhh
Confidence            997543

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=89.31  E-value=0.32  Score=45.12  Aligned_cols=170  Identities=24%  Similarity=0.266  Sum_probs=77.9

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhC-CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSC-HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~-~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  183 (374)
                      +.++.+.+.  ...+++..  ...... ++|+.|+++.+ .+.... .. ...+++|+.|+++++ .+.+  ++......
T Consensus       116 ~~l~~L~l~--~n~i~~i~--~~~~~~~~nL~~L~l~~N-~i~~l~-~~-~~~l~~L~~L~l~~N-~l~~--l~~~~~~~  185 (394)
T COG4886         116 TNLTSLDLD--NNNITDIP--PLIGLLKSNLKELDLSDN-KIESLP-SP-LRNLPNLKNLDLSFN-DLSD--LPKLLSNL  185 (394)
T ss_pred             cceeEEecC--CcccccCc--cccccchhhccccccccc-chhhhh-hh-hhccccccccccCCc-hhhh--hhhhhhhh
Confidence            456666665  33333211  111223 26777777664 222210 11 233677777777663 3332  22222245


Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      +.|+.|++++..  +  ..+.........|++|.+++...+..   ........++..|.+.++ .+.+  +......++
T Consensus       186 ~~L~~L~ls~N~--i--~~l~~~~~~~~~L~~l~~~~N~~~~~---~~~~~~~~~l~~l~l~~n-~~~~--~~~~~~~l~  255 (394)
T COG4886         186 SNLNNLDLSGNK--I--SDLPPEIELLSALEELDLSNNSIIEL---LSSLSNLKNLSGLELSNN-KLED--LPESIGNLS  255 (394)
T ss_pred             hhhhheeccCCc--c--ccCchhhhhhhhhhhhhhcCCcceec---chhhhhcccccccccCCc-eeee--ccchhcccc
Confidence            677777776632  1  22222222234466666665421111   111223445555555542 2221  012222356


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ  315 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  315 (374)
                      .++.|+++.+. +++...  +.                  ...+|+.|++++
T Consensus       256 ~l~~L~~s~n~-i~~i~~--~~------------------~~~~l~~L~~s~  286 (394)
T COG4886         256 NLETLDLSNNQ-ISSISS--LG------------------SLTNLRELDLSG  286 (394)
T ss_pred             ccceecccccc-cccccc--cc------------------ccCccCEEeccC
Confidence            67777776664 332111  22                  347888888877

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=89.00  E-value=0.13  Score=48.15  Aligned_cols=102  Identities=25%  Similarity=0.328  Sum_probs=44.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      +.+|+.|++.++ .+..  +......+++|+.|++++ +.+.. .++.    .++.|+.|++.++.  +.  .+..+. .
T Consensus        94 ~~~l~~l~l~~n-~i~~--i~~~l~~~~~L~~L~ls~-N~I~~i~~l~----~l~~L~~L~l~~N~--i~--~~~~~~-~  160 (414)
T KOG0531|consen   94 LKSLEALDLYDN-KIEK--IENLLSSLVNLQVLDLSF-NKITKLEGLS----TLTLLKELNLSGNL--IS--DISGLE-S  160 (414)
T ss_pred             ccceeeeecccc-chhh--cccchhhhhcchheeccc-cccccccchh----hccchhhheeccCc--ch--hccCCc-c
Confidence            456666666664 2211  112122356666666665 23322 1122    23446666666532  21  111111 1


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGC  247 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  247 (374)
                      ++.|+.++++++. +....-.. ...+.+++.+.+.++
T Consensus       161 l~~L~~l~l~~n~-i~~ie~~~-~~~~~~l~~l~l~~n  196 (414)
T KOG0531|consen  161 LKSLKLLDLSYNR-IVDIENDE-LSELISLEELDLGGN  196 (414)
T ss_pred             chhhhcccCCcch-hhhhhhhh-hhhccchHHHhccCC
Confidence            4555556665532 22211100 234556666666663

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=86.02  E-value=1.4  Score=41.63  Aligned_cols=43  Identities=26%  Similarity=0.244  Sum_probs=20.8

Q ss_pred             HHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279          204 QAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG  246 (374)
Q Consensus       204 ~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  246 (374)
                      ..+..+.|.+..++++++.-..-..+..+....|+|+.|+|++
T Consensus       211 ~~~~~n~p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~  253 (585)
T KOG3763|consen  211 KHIEENFPEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSH  253 (585)
T ss_pred             HHhhcCCcceeeeecccchhhchhhhhHHHHhcchhheeeccc
Confidence            3344455555555555443222233444444555555555555

>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type

Probab=85.41  E-value=1.5  Score=23.21  Aligned_cols=25  Identities=24%  Similarity=0.449  Sum_probs=20.5

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhC
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTF  331 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~  331 (374)
                      ++|++|+|++ +.+.+.+...+++.+
T Consensus         2 ~~L~~LdL~~-N~i~~~G~~~L~~~L   26 (28)
T smart00368        2 PSLRELDLSN-NKLGDEGARALAEAL   26 (28)
T ss_pred             CccCEEECCC-CCCCHHHHHHHHHHh
Confidence            6899999998 689998888877543

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=84.53  E-value=0.56  Score=23.19  Aligned_cols=14  Identities=50%  Similarity=0.479  Sum_probs=11.3

Q ss_pred             CCceEEecCCccccc
Q 017279          339 GRHSLVMSGCLNLTS  353 (374)
Q Consensus       339 ~L~~L~ls~C~~l~~  353 (374)
                      +|+.|++++| +++.
T Consensus         1 ~L~~Ldls~n-~l~~   14 (22)
T PF00560_consen    1 NLEYLDLSGN-NLTS   14 (22)
T ss_dssp             TESEEEETSS-EESE
T ss_pred             CccEEECCCC-cCEe
Confidence            5789999999 6774

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]

Probab=83.76  E-value=2.5  Score=39.99  Aligned_cols=91  Identities=21%  Similarity=0.139  Sum_probs=60.3

Q ss_pred             HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC--CCCCHHHHHHHHhcCCCCCeeecCCCCCCC--
Q 017279          176 LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCIT--  251 (374)
Q Consensus       176 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~--~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~--  251 (374)
                      +..+....|.+..+.|++... ..-+.+..++...|+|..|+|+++  ....+..+..+  +...|++|-+.|++-.+  
T Consensus       210 L~~~~~n~p~i~sl~lsnNrL-~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~el~K~--k~l~Leel~l~GNPlc~tf  286 (585)
T KOG3763|consen  210 LKHIEENFPEILSLSLSNNRL-YHLDALSSLSQIAPKLKTLDLSHNHSKISSESELDKL--KGLPLEELVLEGNPLCTTF  286 (585)
T ss_pred             HHHhhcCCcceeeeecccchh-hchhhhhHHHHhcchhheeecccchhhhcchhhhhhh--cCCCHHHeeecCCccccch
Confidence            344556788899999887442 344667778888999999999986  21122222222  34678999999954222  


Q ss_pred             ---HHHHHHHHhcCCCCceEe
Q 017279          252 ---DDSVIALANGCPHLRSLG  269 (374)
Q Consensus       252 ---~~~l~~l~~~~~~L~~L~  269 (374)
                         .+-+..+.+.+|+|..|+
T Consensus       287 ~~~s~yv~~i~~~FPKL~~LD  307 (585)
T KOG3763|consen  287 SDRSEYVSAIRELFPKLLRLD  307 (585)
T ss_pred             hhhHHHHHHHHHhcchheeec
Confidence               233566777799998886

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	374
1fs2_A	272	Insights Into Scf Ubiquitin Ligases From The Struct		2e-14
1fqv_A	336	Insights Into Scf Ubiquitin Ligases From The Struct		1e-13
2p1m_B	594	Tir1-ask1 Complex Structure Length = 594		2e-08
3ogk_B	592	Structure Of Coi1-Ask1 In Complex With Coronatine A		1e-07

>pdb|1FS2|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 272

Iteration: 1
 Score = 76.3 bits (186), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 68/245 (27%), Positives = 103/245 (42%), Gaps = 22/245 (8%)
Query: 43  WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAP 102
           W  +P ELLL I S +  P ++  SGVC  W                         SL  
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDE------------------SLWQ 50
Query: 103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR 162
            L + +   +      +E + +  I + C  LQ+L L +  +LSD  +  LA    NL R
Sbjct: 51  TLDEFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EGLRLSDPIVNTLAKN-SNLVR 108
Query: 163 LNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL-GWC 221
           LN+SGC+ FS+ AL  L   C +L  LNL  C      +   A+      +  LNL G+ 
Sbjct: 109 LNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYR 168
Query: 222 EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAI 281
           +++    +  L   CP+L  LDL   V + +D          +L+ L L  C +I    +
Sbjct: 169 KNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETL 227
Query: 282 YSLAQ 286
             L +
Sbjct: 228 LELGE 232

>pdb|1FQV|A Chain A, Insights Into Scf Ubiquitin Ligases From The Structure Of The Skp1-Skp2 Complex Length = 336

Iteration: 1
 Score = 74.3 bits (181), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/265 (26%), Positives = 108/265 (40%), Gaps = 24/265 (9%)
Query: 43  WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLS--- 99
           W  +P ELLL I S +  P ++  SGVC  W           +L     N++  V     
Sbjct: 9   WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGRLL 68
Query: 100 -----------------LAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS 142
                            LA   +  +   +      +E + +  I + C  LQ+L L + 
Sbjct: 69  SQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSL-EG 127
Query: 143 FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYA 202
            +LSD  +  LA    NL RLN+SGC+ FS+ AL  L   C +L  LNL  C      + 
Sbjct: 128 LRLSDPIVNTLAKNS-NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHV 186
Query: 203 LQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG 261
             A+      +  LNL G+ +++    +  L   CP+L  LDL   V + +D        
Sbjct: 187 QVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ- 245
Query: 262 CPHLRSLGLYYCRNITDRAIYSLAQ 286
             +L+ L L  C +I    +  L +
Sbjct: 246 LNYLQHLSLSRCYDIIPETLLELGE 270

>pdb|2P1M|B Chain B, Tir1-ask1 Complex Structure Length = 594

Iteration: 1
 Score = 57.0 bits (136), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/211 (27%), Positives = 89/211 (42%), Gaps = 49/211 (23%)
Query: 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTS----------- 170
           +A+E +   C +L+ L L+++  L    L  L    P L  L   G T+           
Sbjct: 201 SALERLVTRCPNLKSLKLNRAVPLE--KLATLLQRAPQLEELGTGGYTAEVRPDVYSGLS 258
Query: 171 --------------FSDHALAYLCGF---CRKLKILNLCGCVKAATDYALQAIGRNCNQL 213
                         F D   AYL      C +L  LNL         Y L  +   C +L
Sbjct: 259 VALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLS--YATVQSYDLVKLLCQCPKL 316
Query: 214 QSLNLGWCED-VGDVGVMNLAYGCPDLRSLDLCGC--------VCITDDSVIALANGCPH 264
           Q L   W  D + D G+  LA  C DLR L +           V +T+  +++++ GCP 
Sbjct: 317 QRL---WVLDYIEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPK 373
Query: 265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGI 295
           L S+ LY+CR +T+ A+ ++A    +N+P +
Sbjct: 374 LESV-LYFCRQMTNAALITIA----RNRPNM 399

>pdb|3OGK|B Chain B, Structure Of Coi1-Ask1 In Complex With Coronatine And An Incomplete Jaz1 Degron Length = 592

Iteration: 1
 Score = 53.9 bits (128), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 99/249 (39%), Gaps = 63/249 (25%)
Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTL----------VLRQDKPQLE---------D 121
           L  L LS+   N   ++   A ++ KL  L           L Q  P LE         D
Sbjct: 272 LCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGD 331
Query: 122 NAVEAIANSCHDLQDLDLSKSFK----------LSDRSLYALAHGCPNLTRL--NISGCT 169
             +E +A  C  L+ L + +             +S R L ALA GC  L  +   +S  T
Sbjct: 332 RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDIT 391
Query: 170 SFSDHALA-YLCGFC--------RKLKILNL----------CGCVK-----------AAT 199
           + S  ++  YL   C        R+ +I +L           GC K             T
Sbjct: 392 NESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLT 451
Query: 200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 259
           D  L  IG+    ++ + LG+  +  D G+M  + GCP+L+ L++ GC C ++ ++ A  
Sbjct: 452 DLGLSYIGQYSPNVRWMLLGYVGE-SDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAV 509
Query: 260 NGCPHLRSL 268
              P LR L
Sbjct: 510 TKLPSLRYL 518

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	8e-57
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	3e-40
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-49
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	2e-41
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	9e-22
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-44
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	1e-40
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-32
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	4e-27
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	2e-18
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	3e-05
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	6e-16
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	1e-15
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	3e-10
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	4e-08
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	9e-16
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	3e-15
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	7e-14
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-13
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	5e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	3e-14
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	6e-13
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	4e-13
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	8e-12
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	2e-08
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-12
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	1e-10
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	6e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	6e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-07
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	7e-07
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	2e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-06
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	1e-04
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	8e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	9e-06
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	5e-04
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	1e-05
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	2e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	7e-05
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	5e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	8e-05
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-04
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	8e-05
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-04
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-04
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	2e-04
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-04
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-04
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	9e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-04
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	5e-04
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-04
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	6e-04
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	7e-04

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  187 bits (477), Expect = 8e-57
 Identities = 77/335 (22%), Positives = 124/335 (37%), Gaps = 54/335 (16%)

Query: 41  TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMN------ 94
             W  +P ELLL I S +  P ++  SGVC  W           +L     N++      
Sbjct: 7   VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHPDVTGR 66

Query: 95  --------------NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
                          +   LA   +  +   +      +E + +  I + C  LQ+L L 
Sbjct: 67  LLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLE 126

Query: 141 KSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD 200
              +LSD  +  LA    NL RLN+SGC+ FS+ AL  L   C +L  LNL  C      
Sbjct: 127 -GLRLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEK 184

Query: 201 YALQAIGRNCNQLQSLNL-GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALA 259
           +   A+      +  LNL G+ +++    +  L   CP+L  LDL   V + +D      
Sbjct: 185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFF 244

Query: 260 NGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL 319
               +L+ L L  C +I    +  L +                     L++L +     +
Sbjct: 245 Q-LNYLQHLSLSRCYDIIPETLLELGEI------------------PTLKTLQVFGI--V 283

Query: 320 TPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV 354
               +Q L +  P L             C + T++
Sbjct: 284 PDGTLQLLKEALPHLQIN----------CSHFTTI 308

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A Length = 336

 Score =  144 bits (364), Expect = 3e-40
 Identities = 53/212 (25%), Positives = 95/212 (44%), Gaps = 14/212 (6%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  L +LSL   +  +++ +++   K + L  L L        + A++ + +SC  L +L
Sbjct: 117 CSKLQNLSLEGLR--LSDPIVNTLAKNSNLVRLNLSGCS-GFSEFALQTLLSSCSRLDEL 173

Query: 138 DLSKSFKLSDRSL-YALAHGCPNLTRLNISGCTSF-SDHALAYLCGFCRKLKILNLCGCV 195
           +LS  F  +++ +  A+AH    +T+LN+SG         L+ L   C  L  L+L   V
Sbjct: 174 NLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV 233

Query: 196 KAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV 255
               +   Q   +  N LQ L+L  C D+    ++ L    P L++L + G   + D ++
Sbjct: 234 ML-KNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLLELGE-IPTLKTLQVFGI--VPDGTL 288

Query: 256 IALANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
             L    PHL+      C + T  A  ++   
Sbjct: 289 QLLKEALPHLQ----INCSHFTTIARPTIGNK 316

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  172 bits (437), Expect = 9e-49
 Identities = 70/339 (20%), Positives = 118/339 (34%), Gaps = 34/339 (10%)

Query: 47  PMELLLRILSLVDEPT-VIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLAPKLT 105
           P E+L  + S +         S VC  W +        + +  C       V+   PK+ 
Sbjct: 10  PEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVR 69

Query: 106 KLQ---------TLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHG 156
            ++           ++           +EA+++S   L+++ L +   ++D  L  +A  
Sbjct: 70  SVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRM-VVTDDCLELIAKS 128

Query: 157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC-VKAATDYALQAIGRNCNQLQS 215
             N   L +S C  FS   LA +   CR LK L+L    V   + + L         L S
Sbjct: 129 FKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVS 188

Query: 216 LNLGWCE-DVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274
           LN+     +V    +  L   CP+L+SL L   V    + +  L    P L  LG     
Sbjct: 189 LNISCLASEVSFSALERLVTRCPNLKSLKLNRAV--PLEKLATLLQRAPQLEELGTGGYT 246

Query: 275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDE------------EGLQSLNISQCTALTPP 322
                 +YS     +     +   + G +D               L +LN+S  T  +  
Sbjct: 247 AEVRPDVYSGLSVALSGCKEL-RCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYD 305

Query: 323 AVQAL--CDTFPALHTCSGRH----SLVMSGCLNLTSVH 355
            V+ L  C     L            ++ S C +L  + 
Sbjct: 306 LVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELR 344

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score =  152 bits (385), Expect = 2e-41
 Identities = 62/274 (22%), Positives = 110/274 (40%), Gaps = 43/274 (15%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           C  LT L+LS+      +LV  L  +  KLQ L +      +ED  +E +A++C DL++L
Sbjct: 288 CSRLTTLNLSYATVQSYDLV-KLLCQCPKLQRLWVLD---YIEDAGLEVLASTCKDLREL 343

Query: 138 DLSKS--------FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKIL 189
            +  S          L+++ L +++ GCP L  + +  C   ++ AL  +      +   
Sbjct: 344 RVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESV-LYFCRQMTNAALITIARNRPNMTRF 402

Query: 190 NLCGCVKAA--------TDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS 241
            LC     A         D    AI  +C  L+ L+L     + D     +      +  
Sbjct: 403 RLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEM 460

Query: 242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKG 301
           L +      +D  +  + +GC  LR L +  C    D+A+ + A                
Sbjct: 461 LSVAFA-GDSDLGMHHVLSGCDSLRKLEIRDCP-FGDKALLANASK-------------- 504

Query: 302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALH 335
               E ++SL +S C+ ++  A + L    P L+
Sbjct: 505 ---LETMRSLWMSSCS-VSFGACKLLGQKMPKLN 534

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 95.7 bits (238), Expect = 9e-22
 Identities = 38/203 (18%), Positives = 69/203 (33%), Gaps = 16/203 (7%)

Query: 76  AICLGLTHLS--LSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKP--------QLEDNAVE 125
           ++ +G   L   L +C+   N  ++++A     +    L   +P        +  D    
Sbjct: 366 SVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFG 425

Query: 126 AIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK 185
           AI   C DL+ L LS    L+D+    +      +  L+++     SD  + ++   C  
Sbjct: 426 AIVEHCKDLRRLSLSGL--LTDKVFEYIGTYAKKMEMLSVAFA-GDSDLGMHHVLSGCDS 482

Query: 186 LKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLC 245
           L+ L +  C     D AL A       ++SL +  C  V       L    P L    + 
Sbjct: 483 LRKLEIRDCPF--GDKALLANASKLETMRSLWMSSC-SVSFGACKLLGQKMPKLNVEVID 539

Query: 246 GCVCITDDSVIALANGCPHLRSL 268
                               R++
Sbjct: 540 ERGAPDSRPESCPVERVFIYRTV 562

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  160 bits (407), Expect = 2e-44
 Identities = 49/339 (14%), Positives = 108/339 (31%), Gaps = 29/339 (8%)

Query: 43  WKDIPMELLLRILSLVDEP-TVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSLA 101
                 +++ ++++ + +P     AS VC  W         H++++ C     + +    
Sbjct: 13  CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRF 72

Query: 102 PKLTKLQ---------TLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA 152
           P L  L+           ++ ++        V  I+N+   L+ +   +   +SD  L  
Sbjct: 73  PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRM-IVSDLDLDR 131

Query: 153 LAHG-CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC-VKAATDYALQAIGRNC 210
           LA     +L  L +  C+ F+   L  +   CRK+K L +            L  + ++ 
Sbjct: 132 LAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHN 191

Query: 211 NQLQSLNLGW--CEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSL 268
             L+ LN        +    +  +A  C  L S+ +     +        A         
Sbjct: 192 TSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGG 251

Query: 269 GLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE-----EGLQSLNISQCTALTPPA 323
            L     + ++ + +L       + G+                 ++ L++      T   
Sbjct: 252 SLNEDIGMPEKYM-NLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDH 310

Query: 324 VQALCDTFPALHTCSGRHSL-------VMSGCLNLTSVH 355
              +    P L     R+ +       +   C  L  + 
Sbjct: 311 CTLIQK-CPNLEVLETRNVIGDRGLEVLAQYCKQLKRLR 348

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  150 bits (380), Expect = 1e-40
 Identities = 47/276 (17%), Positives = 100/276 (36%), Gaps = 39/276 (14%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLR---------QDKPQLEDNAVEAIA 128
           C  L  L       +    +  LA    +L+ L +           ++  +    + A+A
Sbjct: 317 CPNLEVLETRNVIGD--RGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALA 374

Query: 129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS-------DHALAYLCG 181
             C +L+ + +  S  +++ SL ++     NL    +              D+ +  L  
Sbjct: 375 QGCQELEYMAVYVS-DITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLI 433

Query: 182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRS 241
            C+KL+           TD  L  IG+    ++ + LG+     D G+M  + GCP+L+ 
Sbjct: 434 GCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYV-GESDEGLMEFSRGCPNLQK 492

Query: 242 LDLCGCVCITDDSVIALANGCPHLRSLGLYYCR-NITDRAIYSLAQSGVKNKPGIWESMK 300
           L++ GC C ++ ++ A     P LR L +   R ++T + +  +A+              
Sbjct: 493 LEMRGC-CFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWN---------- 541

Query: 301 GRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHT 336
                  ++ +   +   +         +    +  
Sbjct: 542 -------IELIPSRRVPEVNQQGEIREMEHPAHILA 570

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  126 bits (319), Expect = 2e-32
 Identities = 42/310 (13%), Positives = 99/310 (31%), Gaps = 57/310 (18%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQ-DKPQLEDNAVEAIANSCHDLQD 136
              L  L L  C     + +LS+     K++TL++ +    + +   +  +A     L+ 
Sbjct: 137 ADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEV 196

Query: 137 LDLSKS--FKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC 194
           L+   +   K+S + L  +A  C +L  + +                   +    +L   
Sbjct: 197 LNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNED 256

Query: 195 VKAA--------------------TDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY 234
           +                           +  +     Q++ L+L +     +     L  
Sbjct: 257 IGMPEKYMNLVFPRKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCT-LIQ 315

Query: 235 GCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRN----------ITDRAIYSL 284
            CP+L  L+      I D  +  LA  C  L+ L +    +          ++ R + +L
Sbjct: 316 KCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIAL 373

Query: 285 AQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV 344
           AQ   +                 L+ + +   + +T  +++++      L        ++
Sbjct: 374 AQGCQE-----------------LEYMAVY-VSDITNESLESIGTYLKNLCDF---RLVL 412

Query: 345 MSGCLNLTSV 354
           +     +T +
Sbjct: 413 LDREERITDL 422

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score =  111 bits (279), Expect = 4e-27
 Identities = 37/176 (21%), Positives = 61/176 (34%), Gaps = 12/176 (6%)

Query: 78  CLGLTHLSLSWCKN-------NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS 130
              L    L             ++N V SL     KL+       +  L D  +  I   
Sbjct: 402 LKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQY 461

Query: 131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILN 190
             +++ + L      SD  L   + GCPNL +L + GC  FS+ A+A        L+ L 
Sbjct: 462 SPNVRWMLLGYV-GESDEGLMEFSRGCPNLQKLEMRGC-CFSERAIAAAVTKLPSLRYLW 519

Query: 191 LCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL---RSLD 243
           + G   + T   L  + R    ++ +      +V   G +        +    SL 
Sbjct: 520 VQGYRASMTGQDLMQMARPYWNIELIPSRRVPEVNQQGEIREMEHPAHILAYYSLA 575

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 85.2 bits (211), Expect = 2e-18
 Identities = 45/275 (16%), Positives = 81/275 (29%), Gaps = 56/275 (20%)

Query: 84  LSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA----NSCHDLQDLDL 139
           L   +      N   S    L+ L+ L L     ++       +A    +  H L +++L
Sbjct: 52  LDHLFFHYEFQNQRFSAE-VLSSLRQLNLAGV--RMTPVKCTVVAAVLGSGRHALDEVNL 108

Query: 140 SKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAAT 199
           +   +L    L  L        +L +    S    A   L                    
Sbjct: 109 AS-CQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDLR------------------- 147

Query: 200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITDDSVI 256
                 +  +  Q+ +L L     +   GV  L  G      +  L L     + D+ + 
Sbjct: 148 ----DLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHT-GLGDEGLE 201

Query: 257 ALANG---CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI 313
            LA        L+ L + Y     D A  +LA++  ++                L+ L++
Sbjct: 202 LLAAQLDRNRQLQELNVAYN-GAGDTAALALARAAREHP--------------SLELLHL 246

Query: 314 SQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348
                L+    Q L D   A    +     +  G 
Sbjct: 247 YFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGT 280

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} Length = 372

 Score = 44.7 bits (106), Expect = 3e-05
 Identities = 40/223 (17%), Positives = 64/223 (28%), Gaps = 47/223 (21%)

Query: 81  LTHLSLSWCKNNMNNL----VLSLAPKL---TKLQTLVLRQDKPQLEDNAVEAIA----N 129
           +T L LS      N L    V  L   L   T +  L L      L D  +E +A     
Sbjct: 157 ITTLRLSN-----NPLTAAGVAVLMEGLAGNTSVTHLSLLHT--GLGDEGLELLAAQLDR 209

Query: 130 SCHDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLCGF---- 182
           +   LQ+L+++ +    D +  ALA      P+L  L++      S      L       
Sbjct: 210 NRQ-LQELNVAYN-GAGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAA 266

Query: 183 --CRKLKILNLCGC-VKAATDYALQAIGRNCN-----------QLQSLNLGWCEDVGDVG 228
               ++ +    G  V       L  + RN N           +L   +L        + 
Sbjct: 267 EGGARVVVSLTEGTAVSEYWSVILSEVQRNLNSWDRARVQRHLELLLRDLEDSR-GATLN 325

Query: 229 VMNLAYGC---PDLRSLDLCGCVCITDDSVIALANGCPHLRSL 268
               A       ++R+L           S              
Sbjct: 326 PWRKAQLLRVEGEVRALLEQLG-SSGSPSGSWSHPQFEKGAGH 367

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 74.1 bits (182), Expect = 6e-16
 Identities = 23/155 (14%), Positives = 46/155 (29%), Gaps = 29/155 (18%)

Query: 114 QDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD 173
           Q + Q + N +       + +Q +D + S  +     +    G   + ++ +  C    D
Sbjct: 43  QQRWQKDYNHLPTGPLDKYKIQAIDATDS-CIMSIG-FDHMEGLQYVEKIRLCKCHYIED 100

Query: 174 HALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA 233
             L  L                                 +  + +  C +V D G++ L 
Sbjct: 101 GCLERLSQLE------------------------NLQKSMLEMEIISCGNVTDKGIIALH 136

Query: 234 YGCPDLRSLDLCGCVCITDD--SVIALANGCPHLR 266
               +L+ L L     + +    V A     P L 
Sbjct: 137 -HFRNLKYLFLSDLPGVKEKEKIVQAFKTSLPSLE 170

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 15/106 (14%), Positives = 37/106 (34%), Gaps = 7/106 (6%)

Query: 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP---DL 239
             K++ ++                      ++ + L  C  + D  +  L+        +
Sbjct: 60  KYKIQAIDATDS---CIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSM 116

Query: 240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLA 285
             +++  C  +TD  +IAL +   +L+ L L     + ++     A
Sbjct: 117 LEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKEKEKIVQA 161

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 57.5 bits (139), Expect = 3e-10
 Identities = 18/122 (14%), Positives = 35/122 (28%), Gaps = 23/122 (18%)

Query: 231 NLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK 290
                   ++++D     CI          G  ++  + L  C  I D  +  L+Q    
Sbjct: 55  TGPLDKYKIQAIDATDS-CIMSIG-FDHMEGLQYVEKIRLCKCHYIEDGCLERLSQ---- 108

Query: 291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN 350
                         ++ +  + I  C  +T   +        ALH       L +S    
Sbjct: 109 ----------LENLQKSMLEMEIISCGNVTDKGII-------ALHHFRNLKYLFLSDLPG 151

Query: 351 LT 352
           + 
Sbjct: 152 VK 153

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A Length = 176

 Score = 51.8 bits (124), Expect = 4e-08
 Identities = 13/105 (12%), Positives = 31/105 (29%), Gaps = 31/105 (29%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH---DL 134
              +  + L  C                             +ED  +E ++   +    +
Sbjct: 84  LQYVEKIRLCKCHY---------------------------IEDGCLERLSQLENLQKSM 116

Query: 135 QDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL 179
            ++++     ++D+ + AL H   NL  L +S      +      
Sbjct: 117 LEMEIISCGNVTDKGIIALHH-FRNLKYLFLSDLPGVKEKEKIVQ 160

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 77.3 bits (191), Expect = 9e-16
 Identities = 57/291 (19%), Positives = 93/291 (31%), Gaps = 48/291 (16%)

Query: 81  LTHLSLSWCKNN---MNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDL 134
              L++S    N   +  L   L     +L+ L L      +  +    +     S   L
Sbjct: 172 FKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLE--SCGVTSDNCRDLCGIVASKASL 229

Query: 135 QDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKI 188
           ++L L  + KL D  +  L     H    L  L I  C  T+     L  +      LK 
Sbjct: 230 RELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKE 288

Query: 189 LNLCGCVKAATDYALQAIGR----NCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRS 241
           L+L G      D   + +         QL+SL +  C         + +        L  
Sbjct: 289 LSLAGN--ELGDEGARLLCETLLEPGCQLESLWVKSCS-FTAACCSHFSSVLAQNRFLLE 345

Query: 242 LDLCGCVCITDDSVIALANG----CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWE 297
           L +     + D  V  L  G       LR L L  C +++D +  SLA + + N      
Sbjct: 346 LQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLAATLLANH----- 398

Query: 298 SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348
                     L+ L++S    L    +  L ++            LV+   
Sbjct: 399 ---------SLRELDLSNNC-LGDAGILQLVESVR--QPGCLLEQLVLYDI 437

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 75.8 bits (187), Expect = 3e-15
 Identities = 52/277 (18%), Positives = 90/277 (32%), Gaps = 42/277 (15%)

Query: 81  LTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDL 134
           L  L LS        +  L   L     +L+ L L      L   + E +A+   +  D 
Sbjct: 115 LQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYC--SLSAASCEPLASVLRAKPDF 172

Query: 135 QDLDLSKSFKLSDRSLYALAHG----CPNLTRLNISGC--TSFSDHALAYLCGFCRKLKI 188
           ++L +S +  +++  +  L  G       L  L +  C  TS +   L  +      L+ 
Sbjct: 173 KELTVSNN-DINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRE 231

Query: 189 LNLCGC-VKAATDYALQAIGRNCN-QLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLD 243
           L L    +       L     + + +L++L +  C  +   G  +L         L+ L 
Sbjct: 232 LALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELS 290

Query: 244 LCGCVCITDDSVIALANG----CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM 299
           L G   + D+    L          L SL +  C + T       +    +N+       
Sbjct: 291 LAGN-ELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHFSSVLAQNR------- 341

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHT 336
                   L  L IS    L    V+ LC       +
Sbjct: 342 -------FLLELQISNN-RLEDAGVRELCQGLGQPGS 370

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 71.5 bits (176), Expect = 7e-14
 Identities = 45/220 (20%), Positives = 78/220 (35%), Gaps = 34/220 (15%)

Query: 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQS 215
           ++  L+I      SD   A L    ++ +++ L  C    T+   + I    R    L  
Sbjct: 4   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAE 60

Query: 216 LNLGWCEDVGDVGVMNLAYG----CPDLRSLDLCGCVCITDDSVIALANG---CPHLRSL 268
           LNL    ++GDVGV  +  G       ++ L L  C C+T      L++     P L+ L
Sbjct: 61  LNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQEL 118

Query: 269 GLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALC 328
            L     + D  +  L +  +  +               L+ L +  C +L+  + + L 
Sbjct: 119 HLSDN-LLGDAGLQLLCEGLLDPQC-------------RLEKLQLEYC-SLSAASCEPLA 163

Query: 329 DTFPALHTCSGRHSLVMSGC-LNLTSVHCVCAGQSHRTAS 367
                L        L +S   +N   V  +C G       
Sbjct: 164 S---VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQ 200

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 42/229 (18%), Positives = 71/229 (31%), Gaps = 36/229 (15%)

Query: 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILN 190
           D+Q LD+    +LSD     L         + +  C  T      ++        L  LN
Sbjct: 4   DIQSLDIQCE-ELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 191 LCGCVKAATDYALQAIGR----NCNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLD 243
           L        D  +  + +       ++Q L+L  C  +   G   L+      P L+ L 
Sbjct: 63  LRSN--ELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELH 119

Query: 244 LCGCVCITDDSVIALANG----CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESM 299
           L     + D  +  L  G       L  L L YC +++  +   LA              
Sbjct: 120 LSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKP------- 170

Query: 300 KGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC 348
                    + L +S    +    V+ LC       +     +L +  C
Sbjct: 171 -------DFKELTVS-NNDINEAGVRVLCQGLK--DSPCQLEALKLESC 209

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 70.4 bits (173), Expect = 2e-13
 Identities = 49/233 (21%), Positives = 79/233 (33%), Gaps = 34/233 (14%)

Query: 79  LGLTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA----NSC 131
             L  L L  C    +N  +L   +A     L+ L L  +  +L D  +  +     +  
Sbjct: 199 CQLEALKLESCGVTSDNCRDLCGIVA-SKASLRELALGSN--KLGDVGMAELCPGLLHPS 255

Query: 132 HDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLCGF----CR 184
             L+ L + +   ++ +    L        +L  L+++G     D     LC        
Sbjct: 256 SRLRTLWIWEC-GITAKGCGDLCRVLRAKESLKELSLAGN-ELGDEGARLLCETLLEPGC 313

Query: 185 KLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVGDVGVMNLAYG----CP 237
           +L+ L +  C  + T                L  L +     + D GV  L  G      
Sbjct: 314 QLESLWVKSC--SFTAACCSHFSSVLAQNRFLLELQISNN-RLEDAGVRELCQGLGQPGS 370

Query: 238 DLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQS 287
            LR L L  C  ++D S  +LA        LR L L     + D  I  L +S
Sbjct: 371 VLRVLWLADC-DVSDSSCSSLAATLLANHSLRELDLSNN-CLGDAGILQLVES 421

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.4 bits (129), Expect = 5e-08
 Identities = 35/205 (17%), Positives = 64/205 (31%), Gaps = 47/205 (22%)

Query: 81  LTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDL 134
           L  LSL+  +        L  +L     +L++L ++              ++       L
Sbjct: 286 LKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKS--CSFTAACCSHFSSVLAQNRFL 343

Query: 135 QDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILN 190
            +L +S + +L D  +  L          L  L ++ C   SD + + L           
Sbjct: 344 LELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADC-DVSDSSCSSLA---------- 391

Query: 191 LCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG----CPDLRSLDLCG 246
                       L       + L+ L+L     +GD G++ L          L  L L  
Sbjct: 392 ----------ATLL----ANHSLRELDLSNN-CLGDAGILQLVESVRQPGCLLEQLVLYD 436

Query: 247 CVCITDDSVIALANG---CPHLRSL 268
               +++    L       P LR +
Sbjct: 437 I-YWSEEMEDRLQALEKDKPSLRVI 460

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 72.4 bits (178), Expect = 3e-14
 Identities = 45/227 (19%), Positives = 74/227 (32%), Gaps = 43/227 (18%)

Query: 78  CLGLTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---- 130
           C  L  + LS           L+  L+ K T L+ L L  +   L   A   IA +    
Sbjct: 93  CPKLHTVRLSDNAFGPTAQEPLIDFLS-KHTPLEHLYLHNN--GLGPQAGAKIARALQEL 149

Query: 131 --------CHDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSD----HA 175
                      L+ +   ++ +L + S+   A        L  + +            H 
Sbjct: 150 AVNKKAKNAPPLRSIICGRN-RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIRPEGIEHL 207

Query: 176 LAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVGDVGVMNL 232
           L     +C++LK+L+L       T     A+    ++   L+ L L  C  +   G   +
Sbjct: 208 LLEGLAYCQELKVLDLQDN--TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAAV 264

Query: 233 A-----YGCPDLRSLDLCGCVCITDDSVIALANG----CPHLRSLGL 270
                      L++L L     I  D+V  L        P L  L L
Sbjct: 265 VDAFSKLENIGLQTLRLQYN-EIELDAVRTLKTVIDEKMPDLLFLEL 310

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 68.6 bits (168), Expect = 6e-13
 Identities = 45/291 (15%), Positives = 86/291 (29%), Gaps = 64/291 (21%)

Query: 78  CLGLTHLSLSWCKNNMNNL----VLSLAPKL---TKLQTLVLRQ----DKPQLEDNAVEA 126
              +  + LS      N +       L+  +     L+                  A+  
Sbjct: 31  DDSVKEIVLSG-----NTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRL 85

Query: 127 IANS---CHDLQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLC 180
           +  +   C  L  + LS +      +   L         L  L +         A A + 
Sbjct: 86  LLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIA 143

Query: 181 ------------GFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVG 225
                            L+ +          + +++      ++   L ++ +     + 
Sbjct: 144 RALQELAVNKKAKNAPPLRSIICGRN--RLENGSMKEWAKTFQSHRLLHTVKMVQN-GIR 200

Query: 226 DVGVMN-LAYG---CPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITD 278
             G+ + L  G   C +L+ LDL      T     ALA      P+LR LGL  C  ++ 
Sbjct: 201 PEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSA 258

Query: 279 RAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCD 329
           R   ++  +  K +              GLQ+L +     +   AV+ L  
Sbjct: 259 RGAAAVVDAFSKLEN------------IGLQTLRLQYN-EIELDAVRTLKT 296

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 67.8 bits (166), Expect = 1e-12
 Identities = 34/243 (13%), Positives = 69/243 (28%), Gaps = 50/243 (20%)

Query: 134 LQDLDLSKSFKLSDRSLYALAHG---CPNLTRLNISGCTSFSDHALAYLCGF---CRKLK 187
           ++   L     ++     ++        ++  + +SG T     A  +L       + L+
Sbjct: 6   IEGKSLKLD-AITTEDEKSVFAVLLEDDSVKEIVLSGNT-IGTEAARWLSENIASKKDLE 63

Query: 188 ILNL----CGCVKAATDYALQAIG---RNCNQLQSLNLGWCEDVGDVGVMNLAYG---CP 237
           I        G VK     AL+ +      C +L ++ L      G      L        
Sbjct: 64  IAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPTAQEPLIDFLSKHT 122

Query: 238 DLRSLDLCGCVCITDDSVIALAN------------GCPHLRSLGLYYCRNITDRAIYSLA 285
            L  L L     +   +   +A               P LRS+     R + + ++   A
Sbjct: 123 PLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEWA 180

Query: 286 QSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVM 345
           ++   ++               L ++ + Q           L +    L  C     L +
Sbjct: 181 KTFQSHR--------------LLHTVKMVQNGIRPEGIEHLLLE---GLAYCQELKVLDL 223

Query: 346 SGC 348
              
Sbjct: 224 QDN 226

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 69.0 bits (169), Expect = 4e-13
 Identities = 45/255 (17%), Positives = 80/255 (31%), Gaps = 45/255 (17%)

Query: 105 TKLQTLVLRQDKPQLEDNAVEAIA-----NSCHDLQDLDLSKSFKLSDRSLYALA----H 155
             + +L L  +   L   +   +           +  L+LS +  L  ++   L      
Sbjct: 22  HGVTSLDLSLN--NLYSISTVELIQAFANTPAS-VTSLNLSGN-SLGFKNSDELVQILAA 77

Query: 156 GCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCV--KAATDYALQAIGRN 209
              N+T LN+SG    S  +   L          + +L+L        ++    QA    
Sbjct: 78  IPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNL 136

Query: 210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPD----LRSLDLCGCVCITDDSVIALA----NG 261
              + SLNL    D+G      L          + SL+L G   +   +   LA    + 
Sbjct: 137 PASITSLNLRGN-DLGIKSSDELIQILAAIPANVNSLNLRGN-NLASKNCAELAKFLASI 194

Query: 262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTP 321
              + SL L     +  ++   LA                      + SLN+     L  
Sbjct: 195 PASVTSLDLSANL-LGLKSYAELAYIFSSIPN-------------HVVSLNLCLN-CLHG 239

Query: 322 PAVQALCDTFPALHT 336
           P+++ L     +L  
Sbjct: 240 PSLENLKLLKDSLKH 254

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 64.7 bits (158), Expect = 8e-12
 Identities = 33/218 (15%), Positives = 70/218 (32%), Gaps = 30/218 (13%)

Query: 81  LTHLSLSWCK---NNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA----NSCHD 133
           +T L L W      + +    + +     + +L LR     L   + + +         +
Sbjct: 111 ITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLR--GNDLGIKSSDELIQILAAIPAN 168

Query: 134 LQDLDLSKSFKLSDRSLYALA----HGCPNLTRLNISGCTSFSDHALAYLC----GFCRK 185
           +  L+L  +  L+ ++   LA        ++T L++S        + A L          
Sbjct: 169 VNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNH 226

Query: 186 LKILNLCGC-VKAATDYALQAIGRNCNQLQSLNLGWCE--DVGDVGVMNLAYG---CPDL 239
           +  LNLC   +   +   L+ +  +   LQ++ L +    ++       L         +
Sbjct: 227 VVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKI 286

Query: 240 RSLDLCGCVCITDDSVIALANG----CPHLRSLGLYYC 273
             +D  G   I     I ++N             L   
Sbjct: 287 ILVDKNGK-EIHPSHSIPISNLIRELSGKADVPSLLNQ 323

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 54.7 bits (132), Expect = 2e-08
 Identities = 30/204 (14%), Positives = 54/204 (26%), Gaps = 34/204 (16%)

Query: 148 RSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRK----LKILNLCGC---VKAATD 200
             +         +T L++S   +    +   L          +  LNL G     K + +
Sbjct: 12  NPVEEFTSIPHGVTSLDLSLN-NLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDE 70

Query: 201 YALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG----CPDLRSLDLCGCVCITDDSVI 256
              Q +      + SLNL     +       L          +  LDL      +  S  
Sbjct: 71  LV-QILAAIPANVTSLNLSGN-FLSYKSSDELVKTLAAIPFTITVLDLGWN-DFSSKSSS 127

Query: 257 ALANG----CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLN 312
                       + SL L    ++  ++   L Q  +   P              + SLN
Sbjct: 128 EFKQAFSNLPASITSLNLRGN-DLGIKSSDELIQ-ILAAIPA------------NVNSLN 173

Query: 313 ISQCTALTPPAVQALCDTFPALHT 336
           +     L       L     ++  
Sbjct: 174 LRGN-NLASKNCAELAKFLASIPA 196

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 64.6 bits (156), Expect = 9e-12
 Identities = 35/236 (14%), Positives = 69/236 (29%), Gaps = 18/236 (7%)

Query: 65  VASGVCSGWRDAICLGLTHLSLSWCKNNMNNLV--LSLAPKLTKLQTLVLRQDKPQLEDN 122
           +           I +G        C +  + +V           L    +  ++ ++   
Sbjct: 100 ILKDKKLPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWI 159

Query: 123 AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF 182
               ++     +  L+  K    ++ S+       PNL  L I             L   
Sbjct: 160 EQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPR--PNLKSLEIISGGLPDSVVEDILGSD 217

Query: 183 CRKLKILNLC------GCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG- 235
              L+ L L       G       +           L+ L +   E   +V V       
Sbjct: 218 LPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESD 276

Query: 236 -CPDLRSLDLCGCVCITDDSVIALANGCP---HLRSLGLYYCRNITDRAIYSLAQS 287
             P L ++D+     +TD+    L +      HL+ + + Y   ++D     L +S
Sbjct: 277 ILPQLETMDISAG-VLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKS 330

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 61.5 bits (148), Expect = 1e-10
 Identities = 26/202 (12%), Positives = 61/202 (30%), Gaps = 23/202 (11%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
            +      +SW        +  +   +  L  L ++        N +        +L+ L
Sbjct: 148 DIDFEEQEISWI---EQVDLSPVLDAMPLLNNLKIKGT------NNLSIGKKPRPNLKSL 198

Query: 138 DLSKSFKLSDRSLYALAHG-CPNLTRL-------NISGCTSFSDHALAYLCGFCRKLKIL 189
           ++  S  L D  +  +     PNL +L       +       +     +       LK L
Sbjct: 199 EII-SGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWL 257

Query: 190 NLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD---LRSLDLCG 246
            +    +      +        QL+++++     + D G   L         L+ +++  
Sbjct: 258 GIVDAEEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDHVDKIKHLKFINMKY 316

Query: 247 CVCITDDSVIALANGCPHLRSL 268
              ++D+    L    P    +
Sbjct: 317 N-YLSDEMKKELQKSLPMKIDV 337

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 50.0 bits (118), Expect = 6e-07
 Identities = 27/197 (13%), Positives = 55/197 (27%), Gaps = 33/197 (16%)

Query: 150 LYALAHGCPNLTRLNISGCTS----FSDHALAYLCGFCRKLKILNLCGCVKAATDYALQA 205
           +        +   L            S      L      + +LN            L  
Sbjct: 131 IVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTN---NLSI 187

Query: 206 IGRNCNQLQSLNLGWCEDVGDVGVMNLAYG-CPDLRSLDLC-------GCVCITDDSVIA 257
             +    L+SL +     + D  V ++     P+L  L L            +     + 
Sbjct: 188 GKKPRPNLKSLEIISG-GLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLF 246

Query: 258 LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT 317
             +  P+L+ LG+       +  +    +S +  +               L++++IS   
Sbjct: 247 SKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQ---------------LETMDISAGV 290

Query: 318 ALTPPAVQALCDTFPAL 334
            LT    + L D    +
Sbjct: 291 -LTDEGARLLLDHVDKI 306

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.5 bits (124), Expect = 6e-08
 Identities = 26/142 (18%), Positives = 52/142 (36%), Gaps = 23/142 (16%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLD 138
           +  L+++      N    +  P   L+ L+ L +      +  + +  ++     L  LD
Sbjct: 68  IKDLTIN------NIHATNYNPISGLSNLERLRIMGK--DVTSDKIPNLSG-LTSLTLLD 118

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKA 197
           +S S    D  L  +    P +  +++S   + +D   L  L     +LK LN+      
Sbjct: 119 ISHS-AHDDSILTKINT-LPKVNSIDLSYNGAITDIMPLKTL----PELKSLNIQFD--G 170

Query: 198 ATDYALQAIGRNCNQLQSLNLG 219
             D   + I  +  +L  L   
Sbjct: 171 VHD--YRGIE-DFPKLNQLYAF 189

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 50.0 bits (120), Expect = 2e-07
 Identities = 29/179 (16%), Positives = 63/179 (35%), Gaps = 27/179 (15%)

Query: 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161
                    +L   +    +     + +    L  + L+ +  ++D  L  + +   N+ 
Sbjct: 20  STFKAYLNGLLG--QSSTANITEAQMNS----LTYITLA-NINVTD--LTGIEY-AHNIK 69

Query: 162 RLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLG 219
            L I+    T+++   ++ L      L+ L + G     T   +  +      L  L++ 
Sbjct: 70  DLTINNIHATNYN--PISGL----SNLERLRIMGK--DVTSDKIPNLS-GLTSLTLLDIS 120

Query: 220 WCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITD 278
                 D  +  +    P + S+DL     ITD   +      P L+SL + +   + D
Sbjct: 121 HSA-HDDSILTKIN-TLPKVNSIDLSYNGAITDIMPLK---TLPELKSLNIQFDG-VHD 173

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 Length = 185

 Score = 48.1 bits (115), Expect = 7e-07
 Identities = 29/173 (16%), Positives = 58/173 (33%), Gaps = 20/173 (11%)

Query: 103 KLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAHGCPN 159
            + K        D+     +  E +    N+  DL++++L+    +   +L A A     
Sbjct: 4   SVIKPTKYKPVPDEEPNSTDVEETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKT 63

Query: 160 ---LTRLNISGCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNC 210
              + + +I G T  +D    ALA +      LK LN+       +   + A+    ++ 
Sbjct: 64  NTYVKKFSIVG-TRSNDPVAFALAEMLKVNNTLKSLNVESN--FISGSGILALVEALQSN 120

Query: 211 NQLQSLNLGW-CEDVGDVGVMNLAYGCPD---LRSLDLCGCVCITDDSVIALA 259
             L  L +    + +G+   M +A        L                 + A
Sbjct: 121 TSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT-QQGPRLRASNA 172

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 50.2 bits (120), Expect = 7e-07
 Identities = 39/204 (19%), Positives = 68/204 (33%), Gaps = 40/204 (19%)

Query: 79  LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC----HDL 134
             + HL LS     + +L   +   L  L+ L        L  N +  IA+       +L
Sbjct: 266 SSVRHLDLSH--GFVFSLNSRVFETLKDLKVL-------NLAYNKINKIADEAFYGLDNL 316

Query: 135 QDLDLS--KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILN 190
           Q L+LS     +L   + Y L    P +  +++         D    +L     KL+ L+
Sbjct: 317 QVLNLSYNLLGELYSSNFYGL----PKVAYIDLQKNHIAIIQDQTFKFL----EKLQTLD 368

Query: 191 LCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCI 250
           L          AL  I      +  + L   +      ++ L         + L     +
Sbjct: 369 LRDN-------ALTTI-HFIPSIPDIFLSGNK------LVTLPKINLTANLIHLSEN-RL 413

Query: 251 TDDSVIALANGCPHLRSLGLYYCR 274
            +  ++      PHL+ L L   R
Sbjct: 414 ENLDILYFLLRVPHLQILILNQNR 437

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score = 42.5 bits (100), Expect = 2e-04
 Identities = 29/160 (18%), Positives = 51/160 (31%), Gaps = 34/160 (21%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP------KLTKLQTLVLRQDKPQLEDNAVEAIANSC--- 131
           L  L L        + + S+        KL  L  + L  +   L +N +E +       
Sbjct: 364 LQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLL 423

Query: 132 --HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC-------TSFSDHALAYLCGF 182
               LQ L L+++ + S  S        P+L +L +          T         L   
Sbjct: 424 RVPHLQILILNQN-RFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGL--- 479

Query: 183 CRKLKILNLCGCVKAATDYALQAIG----RNCNQLQSLNL 218
              L++L L           L ++      +   L+ L+L
Sbjct: 480 -SHLQVLYLNHN-------YLNSLPPGVFSHLTALRGLSL 511

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 48.8 bits (117), Expect = 2e-06
 Identities = 46/261 (17%), Positives = 82/261 (31%), Gaps = 45/261 (17%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           LT L LS   NN+N +       L +L+   L  +   ++     ++     +++ L+L 
Sbjct: 250 LTMLDLS--YNNLNVVGNDSFAWLPQLEYFFLEYN--NIQHLFSHSLHG-LFNVRYLNLK 304

Query: 141 KSFKLSDRSLYALA-------HGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           +SF     SL +L             L  LN+          +    L      LK L+L
Sbjct: 305 RSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL----INLKYLSL 360

Query: 192 CG-CVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCV 248
                   T      +    + L  LNL       +       L      L  LDL    
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWL----GHLEVLDLGLN- 415

Query: 249 CITDDSVIALANGCPHLRSLGLYYCR--NITDRAIYSLAQ-----------SGVKNKPGI 295
            I  +       G  ++  + L Y +   +T  +   +               V + P  
Sbjct: 416 EIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSP 475

Query: 296 WESMKGRYDEEGLQSLNISQC 316
           ++ ++       L  L++S  
Sbjct: 476 FQPLR------NLTILDLSNN 490

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 43.1 bits (102), Expect = 1e-04
 Identities = 41/236 (17%), Positives = 66/236 (27%), Gaps = 47/236 (19%)

Query: 81  LTHLSLSWCK---------NNMNNL-VLSLA------------PKLTKLQTLVLRQDKPQ 118
           LT L + +             +  L VL+L                T L  L L  +   
Sbjct: 51  LTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSN--S 108

Query: 119 LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHAL 176
           ++            +L  LDLS +  LS   L        NL  L +S     +     L
Sbjct: 109 IQKIKNNPFVK-QKNLITLDLSHN-GLSSTKLGTQV-QLENLQELLLSNNKIQALKSEEL 165

Query: 177 AYLCGFCRKLKILNLCGCVKAATDYALQAIG----RNCNQLQSLNLGWCEDVGDV-GVMN 231
                    LK L L           ++           +L  L L   +    +   + 
Sbjct: 166 DIFA--NSSLKKLELSSN-------QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLC 216

Query: 232 LAYGCPDLRSLDLCGCVCITDDSVIALAN-GCPHLRSLGLYYCR--NITDRAIYSL 284
           L      +R+L L     ++  S          +L  L L Y     + + +   L
Sbjct: 217 LELANTSIRNLSLSNSQ-LSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWL 271

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 39/199 (19%), Positives = 60/199 (30%), Gaps = 43/199 (21%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP----KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQD 136
           L  L L      +N +   L       L  +  + L     +       + A     LQ 
Sbjct: 407 LEVLDLG-----LNEIGQELTGQEWRGLENIFEIYL--SYNKYLQLTRNSFAL-VPSLQR 458

Query: 137 LDLSK-SFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCG 193
           L L + + K  D S         NLT L++S     + +D  L  L     KL+IL+L  
Sbjct: 459 LMLRRVALKNVDSSPSPF-QPLRNLTILDLSNNNIANINDDMLEGL----EKLEILDLQH 513

Query: 194 CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD 253
                            N L  L     +     G +    G   L  L+L       + 
Sbjct: 514 -----------------NNLARLW----KHANPGGPIYFLKGLSHLHILNLESN-GFDEI 551

Query: 254 SVIALANGCPHLRSLGLYY 272
            V    +    L+ + L  
Sbjct: 552 PVEVFKD-LFELKIIDLGL 569

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 44.3 bits (105), Expect = 8e-06
 Identities = 40/141 (28%), Positives = 58/141 (41%), Gaps = 19/141 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLD 138
           +  L L   ++N   L   L  +  +L+ L          +  + +IAN    + L+ L+
Sbjct: 19  VKELVLDNSRSNEGKL-EGLTDEFEELEFL-------STINVGLTSIANLPKLNKLKKLE 70

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGC-V 195
           LS + ++S   L  LA  CPNLT LN+SG      S   +  L      LK L+L  C V
Sbjct: 71  LSDN-RVS-GGLEVLAEKCPNLTHLNLSGNKIKDLST--IEPLKK-LENLKSLDLFNCEV 125

Query: 196 KAATDYALQAIGRNCNQLQSL 216
               DY          QL  L
Sbjct: 126 TNLNDYRENVFKL-LPQLTYL 145

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 43.1 bits (102), Expect = 2e-05
 Identities = 33/152 (21%), Positives = 52/152 (34%), Gaps = 24/152 (15%)

Query: 125 EAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF-- 182
           E    +  D+++L L  S + ++  L  L      L  L+           L  +     
Sbjct: 10  ELRNRTPSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV------GLTSIANLPK 62

Query: 183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLR 240
             KLK L L           L+ +   C  L  LNL     +D+  +  +       +L+
Sbjct: 63  LNKLKKLELSDN---RVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLK---KLENLK 116

Query: 241 SLDLCGCVCITDD----SVIALANGCPHLRSL 268
           SLDL  C     +    +V  L    P L  L
Sbjct: 117 SLDLFNCEVTNLNDYRENVFKL---LPQLTYL 145

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 46.0 bits (110), Expect = 9e-06
 Identities = 40/203 (19%), Positives = 70/203 (34%), Gaps = 38/203 (18%)

Query: 80  GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDL 139
           G   L+         N +   A  L +    VL+  K  + D  V         +  L +
Sbjct: 1   GAATLATL---PAPINQIFPDA-DLAEGIRAVLQ--KASVTD--VVTQEE-LESITKLVV 51

Query: 140 SKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKA 197
           +   K++      + +   NL  LN++G   T  S   L+ L     KL  L +      
Sbjct: 52  AGE-KVASIQ--GIEY-LTNLEYLNLNGNQITDIS--PLSNL----VKLTNLYIGTN--K 99

Query: 198 ATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV 255
            TD  + A+  N   L+ L L      D+  +           + SL+L     ++D S 
Sbjct: 100 ITD--ISALQ-NLTNLRELYLNEDNISDISPLA------NLTKMYSLNLGANHNLSDLSP 150

Query: 256 IALANGCPHLRSLGLYYCRNITD 278
           ++       L  L +   + + D
Sbjct: 151 LS---NMTGLNYLTVTESK-VKD 169

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score = 40.6 bits (96), Expect = 5e-04
 Identities = 49/198 (24%), Positives = 79/198 (39%), Gaps = 36/198 (18%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLD 138
           L  LSL+       N +  ++P   LT L          Q+ D  +  +AN    L  L 
Sbjct: 179 LYSLSLN------YNQIEDISPLASLTSLHYFTA--YVNQITD--ITPVAN-MTRLNSLK 227

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVK 196
           +  + K++D  L  LA     LT L I     +  +  A+  L     KLK+LN+     
Sbjct: 228 IGNN-KITD--LSPLA-NLSQLTWLEIGTNQISDIN--AVKDL----TKLKMLNVGSN-- 275

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
             +D  +  +  N +QL SL L   + +G+  +  +  G  +L +L L     ITD  + 
Sbjct: 276 QISD--ISVLN-NLSQLNSLFLNNNQ-LGNEDMEVIG-GLTNLTTLFLSQN-HITD--IR 327

Query: 257 ALANGCPHLRSLGLYYCR 274
            LA+    + S       
Sbjct: 328 PLAS-LSKMDSADFANQV 344

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score = 46.0 bits (109), Expect = 1e-05
 Identities = 27/151 (17%), Positives = 57/151 (37%), Gaps = 17/151 (11%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDK-PQLEDNAVEAIANS---CHD 133
            +  + ++LS   N +      L    + + T++L  +    + +N+++    +    + 
Sbjct: 672 GINASTVTLS--YNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729

Query: 134 LQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
           L  +DL  + KL+  S    A   P L+ +++S    +SF             +LK   +
Sbjct: 730 LTTIDLRFN-KLTSLSDDFRATTLPYLSNMDVSYNCFSSFPTQP-----LNSSQLKAFGI 783

Query: 192 CGCVKAATDYALQAIGR---NCNQLQSLNLG 219
                A  +  L+        C  L  L +G
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIG 814

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score = 45.4 bits (108), Expect = 2e-05
 Identities = 36/204 (17%), Positives = 57/204 (27%), Gaps = 37/204 (18%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDL 137
           L  L LS    +            T L+ L        L  N V  ++++      L+ L
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYL-------DLSFNGVITMSSNFLGLEQLEHL 401

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCV 195
           D   S  L   S +++     NL  L+IS        +     L      L++L + G  
Sbjct: 402 DFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGNS 456

Query: 196 KAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY-------GCPDLRSLDLCGCV 248
               +  L  I      L  L+L  C          L             L+ L++    
Sbjct: 457 F--QENFLPDIFTELRNLTFLDLSQC---------QLEQLSPTAFNSLSSLQVLNMSHN- 504

Query: 249 CITDDSVIALANGCPHLRSLGLYY 272
                           L+ L    
Sbjct: 505 NFFSLDTFPYKC-LNSLQVLDYSL 527

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 43.5 bits (103), Expect = 2e-05
 Identities = 24/147 (16%), Positives = 48/147 (32%), Gaps = 25/147 (17%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQ 135
            +    L L         ++ +L   L +   +          DN +  +        L+
Sbjct: 18  AVRDRELDLR---GYKIPVIENLGATLDQFDAIDF-------SDNEIRKLDGFPLLRRLK 67

Query: 136 DLDLS--KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNL 191
            L ++  +  ++ +     L    P+LT L ++        D  L  L    + L  L +
Sbjct: 68  TLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGD--LDPLAS-LKSLTYLCI 120

Query: 192 CGC-VKAATDYALQAIGRNCNQLQSLN 217
               V     Y L  I +   Q++ L+
Sbjct: 121 LRNPVTNKKHYRLYVIYK-VPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.7 bits (101), Expect = 4e-05
 Identities = 30/163 (18%), Positives = 50/163 (30%), Gaps = 34/163 (20%)

Query: 119 LEDNAVEAIAN--SCHDLQDLDLS--KSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH 174
           L    +E  A   +    ++LDL   K   + +     L         ++ S        
Sbjct: 4   LTAELIEQAAQYTNAVRDRELDLRGYKIPVIEN-----LGATLDQFDAIDFSDN------ 52

Query: 175 ALAYLCGF--CRKLKILNLCG-CVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGV 229
            +  L GF   R+LK L +    +    +     + +    L  L L      ++GD+  
Sbjct: 53  EIRKLDGFPLLRRLKTLLVNNNRICRIGE----GLDQALPDLTELILTNNSLVELGDLD- 107

Query: 230 MNLAYGCPDLRSLDLCGCVCITDDS----VIALANGCPHLRSL 268
             LA     L  L +              VI      P +R L
Sbjct: 108 -PLA-SLKSLTYLCILRNPVTNKKHYRLYVIYK---VPQVRVL 145

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 37/224 (16%), Positives = 64/224 (28%), Gaps = 40/224 (17%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH-DLQD 136
                 L+    +N +          +  L            ED +       C   ++ 
Sbjct: 201 SAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDM--DDEDISPAVFEGLCEMSVES 258

Query: 137 LDLSKS--FKLSDRSLYALAH-------------------GCPNLTRLNISGC--TSFSD 173
           ++L K   F +S  + +  +                    G   L +L +S     +   
Sbjct: 259 INLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQ 318

Query: 174 HALAYLCGFCRKLKILNLCGCVKAAT--DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN 231
            + +        L  L++ G  K        L+    N   L+ L+L    D+      N
Sbjct: 319 ISASNF----PSLTHLSIKGNTKRLELGTGCLE----NLENLRELDLSHD-DIETSDCCN 369

Query: 232 LA-YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR 274
           L       L+SL+L            A    CP L  L L + R
Sbjct: 370 LQLRNLSHLQSLNLSYN-EPLSLKTEAFKE-CPQLELLDLAFTR 411

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 33/144 (22%), Positives = 55/144 (38%), Gaps = 20/144 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           L  L+LS+  N   +L      +  +L+ L L     +L+    ++   + H L+ L+LS
Sbjct: 378 LQSLNLSY--NEPLSLKTEAFKECPQLELLDLAFT--RLKVKDAQSPFQNLHLLKVLNLS 433

Query: 141 KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAA 198
            S  L   S      G P L  LN+ G      +      L     +L+IL L  C    
Sbjct: 434 HS-LLDISSEQLF-DGLPALQHLNLQGNHFPKGNIQKTNSLQT-LGRLEILVLSFC---- 486

Query: 199 TDYALQAIG----RNCNQLQSLNL 218
               L +I      +   +  ++L
Sbjct: 487 ---DLSSIDQHAFTSLKMMNHVDL 507

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 43.5 bits (103), Expect = 8e-05
 Identities = 34/212 (16%), Positives = 63/212 (29%), Gaps = 21/212 (9%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           L  L LS     +  +       L  L  L+L      ++  +  + +     L++L   
Sbjct: 58  LQWLDLSR--CEIETIEDKAWHGLHHLSNLILTG--NPIQSFSPGSFSG-LTSLENLVAV 112

Query: 141 KSF--KLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV-KA 197
           ++    L    +         L +LN++         L         L  ++L     + 
Sbjct: 113 ETKLASLESFPI----GQLITLKKLNVAHN-FIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167

Query: 198 ATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV 255
            T   LQ +  N     SL++     + + D      A+    L  L L G    ++   
Sbjct: 168 ITVNDLQFLRENPQVNLSLDMSLNPIDFIQD-----QAFQGIKLHELTLRGNFNSSNIMK 222

Query: 256 IALANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
             L      L    L       +R +     S
Sbjct: 223 TCL-QNLAGLHVHRLILGEFKDERNLEIFEPS 253

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 27/211 (12%), Positives = 59/211 (27%), Gaps = 29/211 (13%)

Query: 79  LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANS--CHDLQD 136
           + +    L+    N  +  +     L  +  +        L   +++ + +       Q 
Sbjct: 261 VTIDEFRLT--YTNDFSDDIVKFHCLANVSAM-------SLAGVSIKYLEDVPKHFKWQS 311

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCG-CV 195
           L + +  +L            P L  L ++                   L  L+L    +
Sbjct: 312 LSIIRC-QLKQFP----TLDLPFLKSLTLTMNKGSISFKKV----ALPSLSYLDLSRNAL 362

Query: 196 KAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV 255
             +   +        N L+ L+L +    G + +     G  +L+ LD      +   + 
Sbjct: 363 SFSGCCSYS--DLGTNSLRHLDLSFN---GAIIMSANFMGLEELQHLDFQHS-TLKRVTE 416

Query: 256 IALANGCPHLRSLGLYYCR--NITDRAIYSL 284
            +       L  L + Y       D     L
Sbjct: 417 FSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 29/143 (20%), Positives = 45/143 (31%), Gaps = 19/143 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP---KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
           L++L LS    N  +     +        L+ L L  +   +             +LQ L
Sbjct: 352 LSYLDLS---RNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMSANFM----GLEELQHL 404

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCV 195
           D   S  L   + ++       L  L+IS        D     L      L  L + G  
Sbjct: 405 DFQHS-TLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL----TSLNTLKMAGN- 458

Query: 196 KAATDYALQAIGRNCNQLQSLNL 218
            +  D  L  +  N   L  L+L
Sbjct: 459 -SFKDNTLSNVFANTTNLTFLDL 480

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 43.0 bits (101), Expect = 8e-05
 Identities = 30/115 (26%), Positives = 42/115 (36%), Gaps = 5/115 (4%)

Query: 79  LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDL 137
            GL  LS++  + +  N           L TL L  +    E   + A+       LQ L
Sbjct: 149 PGLKVLSIA--QAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVL 206

Query: 138 DLSK-SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNL 191
            L     +       ALA     L  L++S   S  D A A  C +  +L  LNL
Sbjct: 207 ALRNAGMETPSGVCSALAAARVQLQGLDLSHN-SLRDAAGAPSCDWPSQLNSLNL 260

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 42.3 bits (100), Expect = 2e-04
 Identities = 48/204 (23%), Positives = 74/204 (36%), Gaps = 44/204 (21%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLD 138
           LT L+L       NN +  + P   LT L  L L  +   + D  + A++     LQ L 
Sbjct: 114 LTGLTLF------NNQITDIDPLKNLTNLNRLELSSN--TISD--ISALSG-LTSLQQLS 162

Query: 139 LSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVK 196
                      L  LA+    L RL+IS    +  S   LA L      L+ L       
Sbjct: 163 FGNQV----TDLKPLAN-LTTLERLDISSNKVSDIS--VLAKL----TNLESLIATNN-- 209

Query: 197 AATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS 254
             +D  +  +G     L  L+L     +D+G +          +L  LDL     I++  
Sbjct: 210 QISD--ITPLG-ILTNLDELSLNGNQLKDIGTLA------SLTNLTDLDLANN-QISN-- 257

Query: 255 VIALANGCPHLRSLGLYYCRNITD 278
           +  L+     L  L L     I++
Sbjct: 258 LAPLSG-LTKLTELKLGAN-QISN 279

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score = 41.1 bits (97), Expect = 4e-04
 Identities = 41/206 (19%), Positives = 68/206 (33%), Gaps = 47/206 (22%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQD 136
           L  LSL+       N +  +     LT L  L        L +N +  +A       L +
Sbjct: 223 LDELSLN------GNQLKDIGTLASLTNLTDL-------DLANNQISNLAPLSGLTKLTE 269

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGC 194
           L L  + ++S+  +  LA     LT L ++       S           + L  L L   
Sbjct: 270 LKLGAN-QISN--ISPLAG-LTALTNLELNENQLEDISP------ISNLKNLTYLTLYFN 319

Query: 195 VKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGCVCITD 252
               +D  +  +  +  +LQ L        DV  +          ++  L       I+D
Sbjct: 320 --NISD--ISPVS-SLTKLQRLFFYNNKVSDVSSLA------NLTNINWLSAGHN-QISD 367

Query: 253 DSVIALANGCPHLRSLGLYYCRNITD 278
             +  LAN    +  LGL      T+
Sbjct: 368 --LTPLAN-LTRITQLGLNDQ-AWTN 389

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens} Length = 312

 Score = 42.0 bits (98), Expect = 2e-04
 Identities = 20/131 (15%), Positives = 38/131 (29%), Gaps = 11/131 (8%)

Query: 41  TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGLTHLSLSWCKNNMNNLVLSL 100
           +    +P+++ L ILS +    +         W +          + W        +L  
Sbjct: 3   STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNE-----TVRDPILW-----RYFLLRD 52

Query: 101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL 160
            P  + +    L   +   +    E    +  D   +       L  ++    A   P L
Sbjct: 53  LPSWSSVDWKSLPDLEILKKPI-SEVTDGAFFDYMAVYRMCCPYLIIQNEPRFAMFGPGL 111

Query: 161 TRLNISGCTSF 171
             LN S   S 
Sbjct: 112 EELNTSLVLSL 122

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 42.2 bits (100), Expect = 2e-04
 Identities = 39/202 (19%), Positives = 69/202 (34%), Gaps = 29/202 (14%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP---KLTKLQTLVLRQDK-----PQLEDNAVEAIANSCH 132
           +T + LS     +N    +++     LT L++L L                         
Sbjct: 52  VTSIDLS--SKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGF---------KCSA 100

Query: 133 DLQDLDLSK-SFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNL 191
            L  LDLS+ S      +L +L   C  L  LN+S   +               L++L+L
Sbjct: 101 SLTSLDLSRNSLSGPVTTLTSLGS-CSGLKFLNVSSN-TLDFPGKVSGGLKLNSLEVLDL 158

Query: 192 CGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT 251
                +  +     +   C +L+ L +   +  GDV V        +L  LD+      +
Sbjct: 159 SANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRC----VNLEFLDVSSNN-FS 213

Query: 252 DDSVIALANGCPHLRSLGLYYC 273
              +  L + C  L+ L +   
Sbjct: 214 -TGIPFLGD-CSALQHLDISGN 233

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score = 41.8 bits (99), Expect = 3e-04
 Identities = 30/144 (20%), Positives = 53/144 (36%), Gaps = 12/144 (8%)

Query: 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLC 192
           DL    L+  F     SL +L      L  L +S     +  +++        L  L+L 
Sbjct: 56  DLSSKPLNVGFSAVSSSLLSL----TGLESLFLSNS-HIN-GSVSGF-KCSASLTSLDLS 108

Query: 193 GCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD 252
               +     L ++G +C+ L+ LN+         G ++       L  LDL     I+ 
Sbjct: 109 RNSLSGPVTTLTSLG-SCSGLKFLNVSSNTLDF-PGKVSGGLKLNSLEVLDLSANS-ISG 165

Query: 253 D--SVIALANGCPHLRSLGLYYCR 274
                  L++GC  L+ L +   +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNK 189

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score = 42.0 bits (99), Expect = 3e-04
 Identities = 26/159 (16%), Positives = 50/159 (31%), Gaps = 31/159 (19%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAI-----ANSCH 132
            + L  L+L+   N +  +  +      +++ L           N ++ I     A S  
Sbjct: 352 EIKLASLNLA--YNQITEIPANFCGFTEQVENL-------SFAHNKLKYIPNIFDAKSVS 402

Query: 133 DLQDLDLS-----KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRK 185
            +  +D S          +   L        N++ +N+S    + F       L      
Sbjct: 403 VMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKE----LFSTGSP 458

Query: 186 LKILNLCGC-----VKAATDYALQAIGRNCNQLQSLNLG 219
           L  +NL G       K +     +    N   L S++L 
Sbjct: 459 LSSINLMGNMLTEIPKNSLKDENENFK-NTYLLTSIDLR 496

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 49/242 (20%), Positives = 83/242 (34%), Gaps = 65/242 (26%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQD 136
           +T L L+       N +  + P   L  L  L        L++N V+ +++      L+ 
Sbjct: 70  VTKLFLN------GNKLTDIKPLANLKNLGWL-------FLDENKVKDLSSLKDLKKLKS 116

Query: 137 LDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK 196
           L L  +  +SD  +  L H  P L  L +          L+ L     KL  L+L     
Sbjct: 117 LSLEHN-GISD--INGLVH-LPQLESLYLGNNKITDITVLSRL----TKLDTLSL----- 163

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
                         NQ+  +               LA G   L++L L     I+D   +
Sbjct: 164 ------------EDNQISDIV-------------PLA-GLTKLQNLYLSKN-HISDLRAL 196

Query: 257 ALANGCPHLRSLGLYYCRNITDRAIYSLAQ----SGVKNKPGIWESMKGRYDEEGLQSLN 312
           A   G  +L  L L+      ++ I   +     + VKN  G   + +   D+   +  N
Sbjct: 197 A---GLKNLDVLELFSQ-ECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPN 252

Query: 313 IS 314
           + 
Sbjct: 253 VK 254

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 39.7 bits (93), Expect = 9e-04
 Identities = 35/181 (19%), Positives = 68/181 (37%), Gaps = 35/181 (19%)

Query: 102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT 161
               +     L+  K  + D          + +  +  + S  +    +  + +  PN+T
Sbjct: 21  DAFAETIKDNLK--KKSVTD--AVTQNE-LNSIDQIIANNS-DIKS--VQGIQY-LPNVT 71

Query: 162 RLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG--RNCNQLQSLN 217
           +L ++G   T      LA L    + L  L L           ++ +   ++  +L+SL+
Sbjct: 72  KLFLNGNKLTDIKP--LANL----KNLGWLFLDEN-------KVKDLSSLKDLKKLKSLS 118

Query: 218 LGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT 277
           L     + D+  +      P L SL L     ITD +V++       L +L L   + I+
Sbjct: 119 LEHNG-ISDINGLV---HLPQLESLYLGNN-KITDITVLS---RLTKLDTLSLEDNQ-IS 169

Query: 278 D 278
           D
Sbjct: 170 D 170

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 3e-04
 Identities = 34/144 (23%), Positives = 49/144 (34%), Gaps = 24/144 (16%)

Query: 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF--CRKLKILN 190
            +++L L    K +D  +  L     NL  L++          L  +       KLK L 
Sbjct: 25  AVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV------GLISVSNLPKLPKLKKLE 77

Query: 191 LCGCVKAATDYALQAIGRNCNQLQSLNLGWC--EDVGDVGVMNLAYGCPDLRSLDLCGC- 247
           L           L  +      L  LNL     +D+  +  +        L+SLDL  C 
Sbjct: 78  LSEN---RIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLK---KLECLKSLDLFNCE 131

Query: 248 VCITDD---SVIALANGCPHLRSL 268
           V   +D   SV  L    P L  L
Sbjct: 132 VTNLNDYRESVFKL---LPQLTYL 152

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 40.9 bits (95), Expect = 5e-04
 Identities = 29/92 (31%), Positives = 41/92 (44%), Gaps = 13/92 (14%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQ 135
            L +THL LS   N +  L  +LA  L  L+ L       Q  DNA+E +    +   LQ
Sbjct: 462 LLLVTHLDLS--HNRLRALPPALA-ALRCLEVL-------QASDNALENVDGVANLPRLQ 511

Query: 136 DLDLSKSFKLSDRSLYALAHGCPNLTRLNISG 167
           +L L  + +L   +       CP L  LN+ G
Sbjct: 512 ELLLCNN-RLQQSAAIQPLVSCPRLVLLNLQG 542

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 40.9 bits (96), Expect = 5e-04
 Identities = 27/149 (18%), Positives = 44/149 (29%), Gaps = 42/149 (28%)

Query: 133 DLQDLDLSKSF--KLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKI 188
            ++ LDLS +    +    L      C NL  L +      +    A   L      L+ 
Sbjct: 27  AMKSLDLSFNKITYIGHGDL----RACANLQVLILKSSRINTIEGDAFYSL----GSLEH 78

Query: 189 LNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV 248
           L+L                   N L SL+  W                  L+ L+L G  
Sbjct: 79  LDLSD-----------------NHLSSLSSSWFG------------PLSSLKYLNLMGN- 108

Query: 249 CITDDSVIALANGCPHLRSLGLYYCRNIT 277
                 V +L     +L++L +      +
Sbjct: 109 PYQTLGVTSLFPNLTNLQTLRIGNVETFS 137

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 29/143 (20%), Positives = 46/143 (32%), Gaps = 13/143 (9%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLS 140
           L  L LS    +            T L+ L L  +        + +       L+ LD  
Sbjct: 349 LEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI----TMSSNFLGLEQLEHLDFQ 404

Query: 141 KSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAA 198
            S  L   S +++     NL  L+IS        +     L      L++L + G   + 
Sbjct: 405 HS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGN--SF 457

Query: 199 TDYALQAIGRNCNQLQSLNLGWC 221
            +  L  I      L  L+L  C
Sbjct: 458 QENFLPDIFTELRNLTFLDLSQC 480

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E Length = 53

 Score = 36.4 bits (85), Expect = 6e-04
 Identities = 14/38 (36%), Positives = 18/38 (47%)

Query: 41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
            W  +P ELLL I S +  P ++  SGVC  W     
Sbjct: 7  VSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 44

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 40.0 bits (94), Expect = 7e-04
 Identities = 33/146 (22%), Positives = 50/146 (34%), Gaps = 19/146 (13%)

Query: 81  LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIAN---SCHDLQDL 137
           LT LSLS    +            T L+ L        L  N V  +++       L+ L
Sbjct: 54  LTKLSLSSNGLSFKGCCSQSDFGTTSLKYL-------DLSFNGVITMSSNFLGLEQLEHL 106

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCV 195
           D   S  L   S +++     NL  L+IS        +     L      L++L + G  
Sbjct: 107 DFQHS-NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL----SSLEVLKMAGN- 160

Query: 196 KAATDYALQAIGRNCNQLQSLNLGWC 221
            +  +  L  I      L  L+L  C
Sbjct: 161 -SFQENFLPDIFTELRNLTFLDLSQC 185

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	374
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.97
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.95
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.94
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.91
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.91
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.73
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.72
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.7
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.6
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.55
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.45
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.44
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.42
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	99.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.39
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	99.35
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.25
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.23
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	99.22
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.19
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.17
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.16
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.15
1o6v_A	466	Internalin A; bacterial infection, extracellular r	99.14
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.13
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.12
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.12
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	99.12
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.11
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.1
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	99.08
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.08
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.08
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.08
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.07
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	99.06
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.05
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	99.05
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.04
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	99.04
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	99.04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.02
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	99.02
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.01
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	99.01
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	99.0
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	99.0
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	99.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	98.99
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.99
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	98.98
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.97
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	98.96
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	98.95
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.95
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	98.94
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.94
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	98.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	98.94
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.93
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.93
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.92
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	98.92
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	98.91
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	98.91
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	98.9
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	98.88
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.88
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.87
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	98.86
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.85
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.85
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	98.85
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.84
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.82
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	98.8
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	98.78
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.78
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	98.77
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	98.76
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.76
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	98.75
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	98.73
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.72
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	98.71
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.7
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.69
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.69
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	98.69
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	98.68
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	98.65
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.62
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	98.6
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.56
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	98.55
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	98.55
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.52
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.46
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	98.45
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.34
3m19_A	251	Variable lymphocyte receptor A diversity region; a	98.32
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	98.26
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	98.25
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.19
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.18
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	98.17
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	98.15
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	98.1
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	98.07
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	98.05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	98.03
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	98.02
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.94
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	97.94
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	97.93
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.92
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.9
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.86
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.82
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	97.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	97.81
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	97.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	97.77
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	97.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	97.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.61
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	97.54
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.49
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.45
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	97.44
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.41
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.37
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	97.34
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	97.31
1fs1_A	53	SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, L	97.29
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.18
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	97.15
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	97.09
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	97.07
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	97.02
2ovr_B	445	FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40	96.83
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	96.79
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.78
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	96.63
1p22_A	435	F-BOX/WD-repeat protein 1A; ubiquitination, degrad	96.61
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	96.61
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	96.52
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	95.11
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	95.01
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	94.68
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	93.95
2e31_A	297	FBS1, F-box only protein 2; ubiquitin, SCF, ubiqui	91.78
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	90.91
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	90.84
3l2o_B	312	F-box only protein 4; small G protein fold, UBL co	90.77
3v7d_B	464	Cell division control protein 4; WD 40 domain, pho	84.74

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.97  E-value=4.4e-30  Score=231.67  Aligned_cols=281  Identities=25%  Similarity=0.371  Sum_probs=189.9

Q ss_pred             cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh--ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCC
Q 017279           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC--LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDK  116 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~--~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  116 (374)
                      ....|.+||+|++.+||+|++..++.+++.|||+|+.++.  ..++.++++...... ..+..+.  .++++.++++  .
T Consensus         5 ~~~~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l~~~~~~~-~~~~~~~--~~~l~~L~l~--~   79 (336)
T 2ast_B            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDLTGKNLHP-DVTGRLL--SQGVIAFRCP--R   79 (336)
T ss_dssp             --CCSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEECTTCBCCH-HHHHHHH--HTTCSEEECT--T
T ss_pred             ccCChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeeccccccCCH-HHHHhhh--hccceEEEcC--C
Confidence            3568999999999999999999999999999999999875  338899998765442 2222211  1577777777  3


Q ss_pred             CCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc
Q 017279          117 PQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK  196 (374)
Q Consensus       117 ~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~  196 (374)
                      +.+...... + ..+++|++|+++++ .+++..+..+...+++|++|++++| .+++.....+. .+++|++|+++++..
T Consensus        80 n~l~~~~~~-~-~~~~~L~~L~L~~~-~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~L~~~~~  154 (336)
T 2ast_B           80 SFMDQPLAE-H-FSPFRVQHMDLSNS-VIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSG  154 (336)
T ss_dssp             CEECSCCCS-C-CCCBCCCEEECTTC-EECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBS
T ss_pred             ccccccchh-h-ccCCCCCEEEccCC-CcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHh-cCCCCCEEECCCCCC
Confidence            322221111 1 13677888888876 4666656666666788888888775 56655554443 478888888887633


Q ss_pred             CccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC-CCCeeecCCCC-CCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP-DLRSLDLCGCV-CITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       197 ~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                       +++..+..+...+++|++|+++++..+++..+......++ +|++|++++|. .+++..+......+++|+.|++++|.
T Consensus       155 -l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~  233 (336)
T 2ast_B          155 -FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSV  233 (336)
T ss_dssp             -CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCT
T ss_pred             -CCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCC
Confidence             5666666666677888888887764577766666666777 88888888765 57766666666667888888888776


Q ss_pred             CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      .+++..+..+..                  +++|++|++++|..+++..+..       +..+++|+.|++++|  +++.
T Consensus       234 ~l~~~~~~~l~~------------------l~~L~~L~l~~~~~~~~~~~~~-------l~~~~~L~~L~l~~~--i~~~  286 (336)
T 2ast_B          234 MLKNDCFQEFFQ------------------LNYLQHLSLSRCYDIIPETLLE-------LGEIPTLKTLQVFGI--VPDG  286 (336)
T ss_dssp             TCCGGGGGGGGG------------------CTTCCEEECTTCTTCCGGGGGG-------GGGCTTCCEEECTTS--SCTT
T ss_pred             cCCHHHHHHHhC------------------CCCCCEeeCCCCCCCCHHHHHH-------HhcCCCCCEEeccCc--cCHH
Confidence            566555554433                  3677777777766666544322       245677777777777  5554


Q ss_pred             cce
Q 017279          355 HCV  357 (374)
Q Consensus       355 ~~~  357 (374)
                      .+.
T Consensus       287 ~~~  289 (336)
T 2ast_B          287 TLQ  289 (336)
T ss_dssp             CHH
T ss_pred             HHH
Confidence            443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.95  E-value=5.1e-27  Score=227.75  Aligned_cols=179  Identities=22%  Similarity=0.276  Sum_probs=99.9

Q ss_pred             CCccCCCCHHHHHHHhcCCC-ccchhhhcccchhHHHhhhcc-----------------------Cceeecccccccc--
Q 017279           40 ITEWKDIPMELLLRILSLVD-EPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKNNM--   93 (374)
Q Consensus        40 ~~~~~~Lp~eil~~If~~L~-~~~l~~~~~vc~~w~~~~~~~-----------------------l~~L~l~~~~~~~--   93 (374)
                      .+.|+.||+|++.+||+||+ .+++.+++.|||+|+.+....                       ++.+++.++....  
T Consensus         3 ~d~~~~LPdevL~~If~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~   82 (594)
T 2p1m_B            3 KRIALSFPEEVLEHVFSFIQLDKDRNSVSLVCKSWYEIERWCRRKVFIGNCYAVSPATVIRRFPKVRSVELKGKPHFADF   82 (594)
T ss_dssp             -------CHHHHHHHHHTCCCHHHHHHHHTSCHHHHHHHHHHCCEEEESSTTSSCHHHHHHHCTTCCEEEEECSCGGGGG
T ss_pred             ccchhhCCHHHHHHHHhhcCCchhHHHHHHHHHHHHHhhhhhceEEeeccccccCHHHHHhhCCCceEEeccCCCchhhc
Confidence            46899999999999999998 899999999999999874333                       3444444432111  


Q ss_pred             -----------hHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcE
Q 017279           94 -----------NNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTR  162 (374)
Q Consensus        94 -----------~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~  162 (374)
                                 ...+..+...+++|+.|+++  ...+++..+..+...+++|++|++.+|..+++..+..+...+++|++
T Consensus        83 ~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~--~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~  160 (594)
T 2p1m_B           83 NLVPDGWGGYVYPWIEAMSSSYTWLEEIRLK--RMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKE  160 (594)
T ss_dssp             TCSCTTSCCBCHHHHHHHHHHCTTCCEEEEE--SCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCE
T ss_pred             ccccccccchhhHHHHHHHHhCCCCCeEEee--CcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCE
Confidence                       11233444566677777777  34466666666655567777777776655666666666655666666


Q ss_pred             EeecCCCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCC
Q 017279          163 LNISGCTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWC  221 (374)
Q Consensus       163 L~L~~~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  221 (374)
                      |++++|. +++.   .+..+...+++|++|+++++...++...+..+...+++|++|+++++
T Consensus       161 L~L~~~~-i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~  221 (594)
T 2p1m_B          161 LDLRESD-VDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRA  221 (594)
T ss_dssp             EECTTCE-EECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTT
T ss_pred             EeCcCCc-cCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCC
Confidence            6666542 1111   11112223344444444443312334444444444555555555543

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.94  E-value=8e-26  Score=203.78  Aligned_cols=300  Identities=22%  Similarity=0.295  Sum_probs=222.1

Q ss_pred             cCCCcCHHHHHHHHHHHHHhccccCCCCcc--ccCCccCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhccC
Q 017279            4 EATNLSSEDLNLCFEKMMMAGAGADRAGGV--KMDGVVITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLGL   81 (374)
Q Consensus         4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~~--~~~~~~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~~l   81 (374)
                      .+..||+|++.+||+||+..++.+++.||.  ......+..|..+..       +   ..     ......+.......+
T Consensus         8 ~~~~LP~eil~~If~~L~~~d~~~~~~vc~~W~~~~~~~~~~~~l~l-------~---~~-----~~~~~~~~~~~~~~l   72 (336)
T 2ast_B            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTLDL-------T---GK-----NLHPDVTGRLLSQGV   72 (336)
T ss_dssp             CSSSSCHHHHHHHHTTSCHHHHHHTTSSCHHHHHHHTCSTTSSEEEC-------T---TC-----BCCHHHHHHHHHTTC
T ss_pred             ChhhCCHHHHHHHHHhCCHHHHHHHHHHHHHHHHHhcCchhheeecc-------c---cc-----cCCHHHHHhhhhccc
Confidence            467899999999999999999999999994  333223334543321       0   00     001122333334568


Q ss_pred             ceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279           82 THLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT  161 (374)
Q Consensus        82 ~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  161 (374)
                      +.+++..+.....  ... ...+++|+.|+++  .+.+++..+..+...+++|++|+++++ .+++.....+.. +++|+
T Consensus        73 ~~L~l~~n~l~~~--~~~-~~~~~~L~~L~L~--~~~l~~~~~~~~~~~~~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~  145 (336)
T 2ast_B           73 IAFRCPRSFMDQP--LAE-HFSPFRVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLV  145 (336)
T ss_dssp             SEEECTTCEECSC--CCS-CCCCBCCCEEECT--TCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCS
T ss_pred             eEEEcCCcccccc--chh-hccCCCCCEEEcc--CCCcCHHHHHHHHhhCCCCCEEeCcCc-ccCHHHHHHHhc-CCCCC
Confidence            8888876543221  111 3367999999999  556777766667778999999999997 677777777765 89999


Q ss_pred             EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC-CCCEEeccCCC-CCCHHHHHHHHhcCCCC
Q 017279          162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCE-DVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~-~~~~~~~~~l~~~~~~L  239 (374)
                      +|++++|..+++.++..+...+++|++|+++++.. +++..+......++ +|++|+++++. .+++..+......+++|
T Consensus       146 ~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~-l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L  224 (336)
T 2ast_B          146 RLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  224 (336)
T ss_dssp             EEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             EEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCC-cChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCC
Confidence            99999977889888888888899999999999732 77777777778899 99999999975 57878888888889999


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL  319 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  319 (374)
                      ++|++++|..+++..+..+. .+++|++|++++|..+++.++..+..                  +++|+.|++++|  +
T Consensus       225 ~~L~l~~~~~l~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~l~~------------------~~~L~~L~l~~~--i  283 (336)
T 2ast_B          225 VHLDLSDSVMLKNDCFQEFF-QLNYLQHLSLSRCYDIIPETLLELGE------------------IPTLKTLQVFGI--V  283 (336)
T ss_dssp             SEEECTTCTTCCGGGGGGGG-GCTTCCEEECTTCTTCCGGGGGGGGG------------------CTTCCEEECTTS--S
T ss_pred             CEEeCCCCCcCCHHHHHHHh-CCCCCCEeeCCCCCCCCHHHHHHHhc------------------CCCCCEEeccCc--c
Confidence            99999998668777776665 48999999999997777776655543                  489999999997  8


Q ss_pred             CHHHHHHHHhhCCCccCCCCCceEEecCCcccccccce
Q 017279          320 TPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV  357 (374)
Q Consensus       320 ~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~  357 (374)
                      ++..+..+...+         +.|+++ |..+++..-.
T Consensus       284 ~~~~~~~l~~~l---------~~L~l~-~n~l~~~~~~  311 (336)
T 2ast_B          284 PDGTLQLLKEAL---------PHLQIN-CSHFTTIARP  311 (336)
T ss_dssp             CTTCHHHHHHHS---------TTSEES-CCCSCCTTCS
T ss_pred             CHHHHHHHHhhC---------cceEEe-cccCccccCC
Confidence            877777765333         333454 4456654433

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.93  E-value=1.5e-25  Score=217.43  Aligned_cols=175  Identities=22%  Similarity=0.323  Sum_probs=94.1

Q ss_pred             cCCCCHHHHHHHhcCC-CccchhhhcccchhHHHhhhcc-----------------------Cceeecccccc-------
Q 017279           43 WKDIPMELLLRILSLV-DEPTVIVASGVCSGWRDAICLG-----------------------LTHLSLSWCKN-------   91 (374)
Q Consensus        43 ~~~Lp~eil~~If~~L-~~~~l~~~~~vc~~w~~~~~~~-----------------------l~~L~l~~~~~-------   91 (374)
                      ...||+|++.+||+|| +.+++.+++.|||+|+.+....                       +++|+++++..       
T Consensus        13 ~~~LPdeil~~I~~~L~~~~d~~~~s~vck~W~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~   92 (592)
T 3ogk_B           13 CVATVDDVIEQVMTYITDPKDRDSASLVCRRWFKIDSETREHVTMALCYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLI   92 (592)
T ss_dssp             CCCCGGGTHHHHHTTCCCHHHHHHHTTSCHHHHHHHHHHCCEEEESCGGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCS
T ss_pred             cCCCCHHHHHHHHHhcCCHHHHHHHHHHhHHHHHhhhccccEEEEeeccccChHHHHHhCCCCeEEEecCCcchhhcccc
Confidence            3479999999999999 8999999999999999875333                       34444433211       


Q ss_pred             ------cchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCC-CCEEecCCCCCCCHHHHHHHHhcCCCCcEEe
Q 017279           92 ------NMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHD-LQDLDLSKSFKLSDRSLYALAHGCPNLTRLN  164 (374)
Q Consensus        92 ------~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~  164 (374)
                            .....+..+...+++|+.|+++  ...+++..+..+...+++ |++|++++|..++...+..+...|++|++|+
T Consensus        93 ~~~~~~~~~~~l~~l~~~~~~L~~L~L~--~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~  170 (592)
T 3ogk_B           93 PENWGGYVTPWVTEISNNLRQLKSVHFR--RMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLL  170 (592)
T ss_dssp             CTTSCCBCHHHHHHHHHHCTTCCEEEEE--SCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEE
T ss_pred             cccccccchHHHHHHHhhCCCCCeEEee--ccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEE
Confidence                  0111233334455666666665  334555555544443444 6666665554444555555554556666666


Q ss_pred             ecCCCCCCH---HHHHHHHhcCCCCcEEEcCCCccC-ccHHHHHHHHhcCCCCCEEeccC
Q 017279          165 ISGCTSFSD---HALAYLCGFCRKLKILNLCGCVKA-ATDYALQAIGRNCNQLQSLNLGW  220 (374)
Q Consensus       165 L~~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~-~~~~~~~~l~~~~~~L~~L~l~~  220 (374)
                      +++|. +.+   ..+..+...+++|++|+++++... +....+..+...+++|+.|++++
T Consensus       171 L~~~~-~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~  229 (592)
T 3ogk_B          171 MEESS-FSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGD  229 (592)
T ss_dssp             CTTCE-EECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSS
T ss_pred             Ccccc-ccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccC
Confidence            55542 111   112233333444444444433211 12334444444455555555544

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.91  E-value=1.6e-23  Score=203.15  Aligned_cols=30  Identities=13%  Similarity=-0.020  Sum_probs=23.3

Q ss_pred             CcCCCcCHHHHHHHHHHHH-HhccccCCCCc
Q 017279            3 GEATNLSSEDLNLCFEKMM-MAGAGADRAGG   32 (374)
Q Consensus         3 ~~~~~lp~e~~~~i~~~l~-~~~~~~~~~~~   32 (374)
                      +.+..||+|++.+||+||+ ..+..+++.||
T Consensus         4 d~~~~LPdevL~~If~~L~~~~d~~~~s~vc   34 (594)
T 2p1m_B            4 RIALSFPEEVLEHVFSFIQLDKDRNSVSLVC   34 (594)
T ss_dssp             ------CHHHHHHHHHTCCCHHHHHHHHTSC
T ss_pred             cchhhCCHHHHHHHHhhcCCchhHHHHHHHH
Confidence            5677899999999999999 99999999999

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.91  E-value=7.5e-24  Score=205.39  Aligned_cols=27  Identities=0%  Similarity=-0.125  Sum_probs=25.2

Q ss_pred             CCcCHHHHHHHHHHH-HHhccccCCCCc
Q 017279            6 TNLSSEDLNLCFEKM-MMAGAGADRAGG   32 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l-~~~~~~~~~~~~   32 (374)
                      ..||+|++.+||+|| +..+..+++.||
T Consensus        14 ~~LPdeil~~I~~~L~~~~d~~~~s~vc   41 (592)
T 3ogk_B           14 VATVDDVIEQVMTYITDPKDRDSASLVC   41 (592)
T ss_dssp             CCCGGGTHHHHHTTCCCHHHHHHHTTSC
T ss_pred             CCCCHHHHHHHHHhcCCHHHHHHHHHHh
Confidence            369999999999999 899999999999

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.73  E-value=1e-15  Score=140.23  Aligned_cols=253  Identities=17%  Similarity=0.209  Sum_probs=173.2

Q ss_pred             ccCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCC--CCCCh---HHHHHH---HHhCCCCCEEecCCCCCCCHH
Q 017279           79 LGLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDK--PQLED---NAVEAI---ANSCHDLQDLDLSKSFKLSDR  148 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~--~~~~~---~~~~~l---~~~~~~L~~L~l~~~~~~~~~  148 (374)
                      ..++.|+++++......  .+...+..+++|+.|+++ .+  ..+++   ..+..+   ...+++|++|+++++ .++..
T Consensus        32 ~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls-~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~  109 (386)
T 2ca6_A           32 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT  109 (386)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred             CCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCc-ccccCccccchhHHHHHHHHHHhhCCcccEEECCCC-cCCHH
Confidence            45899999987554332  233445678999999998 33  23322   223222   245799999999997 55553


Q ss_pred             H---HHHHHhcCCCCcEEeecCCCCCCHHHHHHHH---hcC---------CCCcEEEcCCCccCccHHHHH---HHHhcC
Q 017279          149 S---LYALAHGCPNLTRLNISGCTSFSDHALAYLC---GFC---------RKLKILNLCGCVKAATDYALQ---AIGRNC  210 (374)
Q Consensus       149 ~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~---------~~L~~L~L~~~~~~~~~~~~~---~l~~~~  210 (374)
                      +   +......+++|++|++++| .+++.+...+.   ..+         ++|++|+++++.  +.+..+.   .....+
T Consensus       110 ~~~~l~~~l~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~  186 (386)
T 2ca6_A          110 AQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKTFQSH  186 (386)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHHHHHC
T ss_pred             HHHHHHHHHHhCCCCCEEECcCC-CCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC--CCcHHHHHHHHHHHhC
Confidence            2   3333355899999999985 56655443332   333         899999999865  5544444   344578


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHh----cCCCCCeeecCCCCCCCHHHHHHH---HhcCCCCceEecCCCCCCCHHHHHH
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDSVIAL---ANGCPHLRSLGLYYCRNITDRAIYS  283 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l---~~~~~~L~~L~l~~~~~i~~~~~~~  283 (374)
                      ++|++|+++++ .+++.++..+..    .+++|+.|++++| .+++.+...+   ...+++|+.|++++|. +++.+...
T Consensus       187 ~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n-~l~~~g~~~l~~~l~~~~~L~~L~L~~n~-i~~~~~~~  263 (386)
T 2ca6_A          187 RLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA  263 (386)
T ss_dssp             TTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred             CCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCC-CCCcHHHHHHHHHHccCCCcCEEECCCCC-CchhhHHH
Confidence            99999999986 478776555443    6899999999995 5776544333   3468999999999996 88887776


Q ss_pred             HHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          284 LAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       284 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                      +.....            ...+++|++|++++ +.+++.++..+...+.  ..+++|+.|++++|+ ++...
T Consensus       264 l~~~l~------------~~~~~~L~~L~L~~-n~i~~~g~~~l~~~l~--~~l~~L~~L~l~~N~-l~~~~  319 (386)
T 2ca6_A          264 VVDAFS------------KLENIGLQTLRLQY-NEIELDAVRTLKTVID--EKMPDLLFLELNGNR-FSEED  319 (386)
T ss_dssp             HHHHHH------------TCSSCCCCEEECCS-SCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB-SCTTS
T ss_pred             HHHHHh------------hccCCCeEEEECcC-CcCCHHHHHHHHHHHH--hcCCCceEEEccCCc-CCcch
Confidence            654310            00248999999999 5788865555543210  347899999999996 66544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=5.2e-16  Score=145.59  Aligned_cols=252  Identities=22%  Similarity=0.288  Sum_probs=166.2

Q ss_pred             hccCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCC----CCCEEecCCCCCCCHHH--
Q 017279           78 CLGLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCH----DLQDLDLSKSFKLSDRS--  149 (374)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~----~L~~L~l~~~~~~~~~~--  149 (374)
                      .+.++.|+++++......  .+......+++|+.|+++  .+.+++.....+...++    +|++|+++++ .+++.+  
T Consensus        27 ~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~~L~~L~L~~n-~i~~~~~~  103 (461)
T 1z7x_W           27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR--SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-CLTGAGCG  103 (461)
T ss_dssp             HTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT--TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-CCBGGGHH
T ss_pred             cCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCC--CCcCChHHHHHHHHHHhhCCCceeEEEccCC-CCCHHHHH
Confidence            355888888877644321  334555567888888888  55676666666666555    6888888886 455433  


Q ss_pred             -HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc----CCCCcEEEcCCCccCccHHH---HHHHHhcCCCCCEEeccCC
Q 017279          150 -LYALAHGCPNLTRLNISGCTSFSDHALAYLCGF----CRKLKILNLCGCVKAATDYA---LQAIGRNCNQLQSLNLGWC  221 (374)
Q Consensus       150 -~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~----~~~L~~L~L~~~~~~~~~~~---~~~l~~~~~~L~~L~l~~~  221 (374)
                       +......+++|++|+++++ .+.+.++..+...    .++|++|+++++.  +++..   +......+++|++|+++++
T Consensus       104 ~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~~~~L~~L~L~~n  180 (461)
T 1z7x_W          104 VLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCS--LSAASCEPLASVLRAKPDFKELTVSNN  180 (461)
T ss_dssp             HHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC--CBGGGHHHHHHHHHHCTTCCEEECCSS
T ss_pred             HHHHHHccCCceeEEECCCC-cCchHHHHHHHHHHhcCCCcceEEECCCCC--CCHHHHHHHHHHHhhCCCCCEEECcCC
Confidence             3333345778888888874 4666655544332    4568888888765  44433   3334456788888888875


Q ss_pred             CCCCHHHHHHHHh----cCCCCCeeecCCCCCCCHHH---HHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCc
Q 017279          222 EDVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDS---VIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPG  294 (374)
Q Consensus       222 ~~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~---l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~  294 (374)
                      . +++.+...+..    ..++|++|++++| .+++.+   +......+++|++|++++|. +++.++..+.....     
T Consensus       181 ~-i~~~~~~~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~-l~~~~~~~l~~~~~-----  252 (461)
T 1z7x_W          181 D-INEAGVRVLCQGLKDSPCQLEALKLESC-GVTSDNCRDLCGIVASKASLRELALGSNK-LGDVGMAELCPGLL-----  252 (461)
T ss_dssp             B-CHHHHHHHHHHHHHHSCCCCCEEECTTS-CCBTTHHHHHHHHHHHCTTCCEEECCSSB-CHHHHHHHHHHHHT-----
T ss_pred             C-cchHHHHHHHHHHhcCCCCceEEEccCC-CCcHHHHHHHHHHHHhCCCccEEeccCCc-CChHHHHHHHHHHh-----
Confidence            4 66655555543    3458888888885 465543   23333357888888888884 77777776654311     


Q ss_pred             cccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279          295 IWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC  356 (374)
Q Consensus       295 ~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~  356 (374)
                              ..+++|++|++++| .+++.+...+...   +..+++|+.|++++| .+++.+.
T Consensus       253 --------~~~~~L~~L~L~~n-~l~~~~~~~l~~~---l~~~~~L~~L~Ls~n-~i~~~~~  301 (461)
T 1z7x_W          253 --------HPSSRLRTLWIWEC-GITAKGCGDLCRV---LRAKESLKELSLAGN-ELGDEGA  301 (461)
T ss_dssp             --------STTCCCCEEECTTS-CCCHHHHHHHHHH---HHHCTTCCEEECTTC-CCHHHHH
T ss_pred             --------cCCCCceEEECcCC-CCCHHHHHHHHHH---HhhCCCcceEECCCC-CCchHHH
Confidence                    13489999999995 8998876666543   355789999999999 4766544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.72  E-value=1.1e-15  Score=143.26  Aligned_cols=249  Identities=24%  Similarity=0.301  Sum_probs=180.6

Q ss_pred             ccCceeecccccccchHHHHHHhhcCC----CCcEEEeeCCCCCCChH---HHHHHHHhCCCCCEEecCCCCCCCHHHHH
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLT----KLQTLVLRQDKPQLEDN---AVEAIANSCHDLQDLDLSKSFKLSDRSLY  151 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~~~~~~~---~~~~l~~~~~~L~~L~l~~~~~~~~~~~~  151 (374)
                      ..+++|+++++... +.....+...++    +|++|+++  .+.+++.   .+......+++|++|+++++ .+++.++.
T Consensus        56 ~~L~~L~Ls~n~l~-~~~~~~l~~~l~~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n-~i~~~~~~  131 (461)
T 1z7x_W           56 PALAELNLRSNELG-DVGVHCVLQGLQTPSCKIQKLSLQ--NCCLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQ  131 (461)
T ss_dssp             TTCCEEECTTCCCH-HHHHHHHHHTTCSTTCCCCEEECT--TSCCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHH
T ss_pred             CCcCEEeCCCCcCC-hHHHHHHHHHHhhCCCceeEEEcc--CCCCCHHHHHHHHHHHccCCceeEEECCCC-cCchHHHH
Confidence            56999999986543 233444444555    79999999  5567753   33333456889999999997 57777776


Q ss_pred             HHHhc----CCCCcEEeecCCCCCCHHH---HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh----cCCCCCEEeccC
Q 017279          152 ALAHG----CPNLTRLNISGCTSFSDHA---LAYLCGFCRKLKILNLCGCVKAATDYALQAIGR----NCNQLQSLNLGW  220 (374)
Q Consensus       152 ~l~~~----~~~L~~L~L~~~~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~----~~~~L~~L~l~~  220 (374)
                      .+...    .++|++|++++| .+++.+   +......+++|++|+++++.  +.+.....+..    ..++|++|++++
T Consensus       132 ~l~~~l~~~~~~L~~L~L~~n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--i~~~~~~~l~~~l~~~~~~L~~L~L~~  208 (461)
T 1z7x_W          132 LLCEGLLDPQCRLEKLQLEYC-SLSAASCEPLASVLRAKPDFKELTVSNND--INEAGVRVLCQGLKDSPCQLEALKLES  208 (461)
T ss_dssp             HHHHHHTSTTCCCCEEECTTS-CCBGGGHHHHHHHHHHCTTCCEEECCSSB--CHHHHHHHHHHHHHHSCCCCCEEECTT
T ss_pred             HHHHHHhcCCCcceEEECCCC-CCCHHHHHHHHHHHhhCCCCCEEECcCCC--cchHHHHHHHHHHhcCCCCceEEEccC
Confidence            66543    457999999986 565533   44455668999999999865  66666555543    466999999998


Q ss_pred             CCCCCHHH---HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh----cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCC
Q 017279          221 CEDVGDVG---VMNLAYGCPDLRSLDLCGCVCITDDSVIALAN----GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKP  293 (374)
Q Consensus       221 ~~~~~~~~---~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~  293 (374)
                      +. +++.+   +......+++|++|++++| .+++.++..+..    .+++|++|++++|. +++.++..+...      
T Consensus       209 n~-l~~~~~~~l~~~l~~~~~L~~L~Ls~n-~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~------  279 (461)
T 1z7x_W          209 CG-VTSDNCRDLCGIVASKASLRELALGSN-KLGDVGMAELCPGLLHPSSRLRTLWIWECG-ITAKGCGDLCRV------  279 (461)
T ss_dssp             SC-CBTTHHHHHHHHHHHCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSC-CCHHHHHHHHHH------
T ss_pred             CC-CcHHHHHHHHHHHHhCCCccEEeccCC-cCChHHHHHHHHHHhcCCCCceEEECcCCC-CCHHHHHHHHHH------
Confidence            75 66544   3344456899999999995 688777766554    47899999999994 998876666542      


Q ss_pred             ccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          294 GIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       294 ~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                              +..+++|++|++++ +.+++.....+...+.  ...++|+.|++++|. ++..+
T Consensus       280 --------l~~~~~L~~L~Ls~-n~i~~~~~~~l~~~l~--~~~~~L~~L~L~~n~-l~~~~  329 (461)
T 1z7x_W          280 --------LRAKESLKELSLAG-NELGDEGARLLCETLL--EPGCQLESLWVKSCS-FTAAC  329 (461)
T ss_dssp             --------HHHCTTCCEEECTT-CCCHHHHHHHHHHHHT--STTCCCCEEECTTSC-CBGGG
T ss_pred             --------HhhCCCcceEECCC-CCCchHHHHHHHHHhc--cCCccceeeEcCCCC-CchHH
Confidence                    11248999999999 5788887777765443  235799999999996 77654

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.70  E-value=3.2e-15  Score=137.00  Aligned_cols=231  Identities=18%  Similarity=0.173  Sum_probs=165.3

Q ss_pred             HHhhcCCCCcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCC--CCCCH---HHHHHH---HhcCCCCcEEeecC
Q 017279           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKS--FKLSD---RSLYAL---AHGCPNLTRLNISG  167 (374)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~--~~~~~---~~~~~l---~~~~~~L~~L~L~~  167 (374)
                      .....+++|+.|+++  .+.+++.....+.   ..+++|++|+++++  ..++.   ..+..+   ...+++|++|++++
T Consensus        26 ~~l~~~~~L~~L~L~--~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~  103 (386)
T 2ca6_A           26 AVLLEDDSVKEIVLS--GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSD  103 (386)
T ss_dssp             HHHHHCSCCCEEECT--TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCS
T ss_pred             HHHhcCCCccEEECC--CCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCC
Confidence            345578999999999  6677776665544   35889999999986  22222   233333   24589999999998


Q ss_pred             CCCCCHH---HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHH---hcC---------CCCCEEeccCCCCCCHHHHH--
Q 017279          168 CTSFSDH---ALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNC---------NQLQSLNLGWCEDVGDVGVM--  230 (374)
Q Consensus       168 ~~~~~~~---~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~---~~~---------~~L~~L~l~~~~~~~~~~~~--  230 (374)
                      + .+.+.   .+......+++|++|+++++.  ++......+.   ..+         ++|++|+++++. +++..+.  
T Consensus       104 n-~l~~~~~~~l~~~l~~~~~L~~L~L~~n~--l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~-l~~~~~~~l  179 (386)
T 2ca6_A          104 N-AFGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR-LENGSMKEW  179 (386)
T ss_dssp             C-CCCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC-CTGGGHHHH
T ss_pred             C-cCCHHHHHHHHHHHHhCCCCCEEECcCCC--CCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC-CCcHHHHHH
Confidence            5 55553   344455679999999999976  5544433333   233         899999999865 6654444  


Q ss_pred             -HHHhcCCCCCeeecCCCCCCCHHHHHHHHh----cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC
Q 017279          231 -NLAYGCPDLRSLDLCGCVCITDDSVIALAN----GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE  305 (374)
Q Consensus       231 -~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~----~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  305 (374)
                       .....+++|++|++++| .+++.++..+..    .+++|+.|++++|. +++.+...+...              +..+
T Consensus       180 ~~~l~~~~~L~~L~L~~n-~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~-l~~~g~~~l~~~--------------l~~~  243 (386)
T 2ca6_A          180 AKTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIA--------------LKSW  243 (386)
T ss_dssp             HHHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHH--------------GGGC
T ss_pred             HHHHHhCCCcCEEECcCC-CCCHhHHHHHHHHHhhcCCCccEEECcCCC-CCcHHHHHHHHH--------------HccC
Confidence             34457899999999995 788877655554    68999999999996 887777666543              1245


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      ++|++|++++ +.+++.+...+...+.. ..+++|+.|++++|. ++..
T Consensus       244 ~~L~~L~L~~-n~i~~~~~~~l~~~l~~-~~~~~L~~L~L~~n~-i~~~  289 (386)
T 2ca6_A          244 PNLRELGLND-CLLSARGAAAVVDAFSK-LENIGLQTLRLQYNE-IELD  289 (386)
T ss_dssp             TTCCEEECTT-CCCCHHHHHHHHHHHHT-CSSCCCCEEECCSSC-CBHH
T ss_pred             CCcCEEECCC-CCCchhhHHHHHHHHhh-ccCCCeEEEECcCCc-CCHH
Confidence            8999999999 46998876666543211 237899999999995 7664

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.60  E-value=3.3e-14  Score=129.00  Aligned_cols=248  Identities=19%  Similarity=0.127  Sum_probs=159.3

Q ss_pred             cCceeecccccccch--HHHHHHhhcCC-CCcEEEeeCCCCCCChHH---HHHHHHh-CCCCCEEecCCCCCCCHH---H
Q 017279           80 GLTHLSLSWCKNNMN--NLVLSLAPKLT-KLQTLVLRQDKPQLEDNA---VEAIANS-CHDLQDLDLSKSFKLSDR---S  149 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~--~~~~~~~~~~~-~L~~L~l~~~~~~~~~~~---~~~l~~~-~~~L~~L~l~~~~~~~~~---~  149 (374)
                      .+++|+++++.....  ..+...+..++ +|+.|+++  .+.+++..   +..+... +++|++|+++++ .+++.   .
T Consensus        23 ~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls--~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n-~l~~~~~~~   99 (362)
T 3goz_A           23 GVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLS--GNSLGFKNSDELVQILAAIPANVTSLNLSGN-FLSYKSSDE   99 (362)
T ss_dssp             TCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECC--SSCGGGSCHHHHHHHHHTSCTTCCEEECCSS-CGGGSCHHH
T ss_pred             CceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECc--CCCCCHHHHHHHHHHHhccCCCccEEECcCC-cCChHHHHH
Confidence            388999988764322  22334455677 89999999  45555433   3333233 389999999997 44433   3


Q ss_pred             HHHHHhcC-CCCcEEeecCCCCCCHHH---HHHHHhc-CCCCcEEEcCCCccCccHH---HHHHHHhcCC-CCCEEeccC
Q 017279          150 LYALAHGC-PNLTRLNISGCTSFSDHA---LAYLCGF-CRKLKILNLCGCVKAATDY---ALQAIGRNCN-QLQSLNLGW  220 (374)
Q Consensus       150 ~~~l~~~~-~~L~~L~L~~~~~~~~~~---~~~l~~~-~~~L~~L~L~~~~~~~~~~---~~~~l~~~~~-~L~~L~l~~  220 (374)
                      +......+ ++|++|+++++ .+++.+   +...... .++|++|+++++.  +.+.   .+.......+ +|++|++++
T Consensus       100 l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~  176 (362)
T 3goz_A          100 LVKTLAAIPFTITVLDLGWN-DFSSKSSSEFKQAFSNLPASITSLNLRGND--LGIKSSDELIQILAAIPANVNSLNLRG  176 (362)
T ss_dssp             HHHHHHTSCTTCCEEECCSS-CGGGSCHHHHHHHHTTSCTTCCEEECTTSC--GGGSCHHHHHHHHHTSCTTCCEEECTT
T ss_pred             HHHHHHhCCCCccEEECcCC-cCCcHHHHHHHHHHHhCCCceeEEEccCCc--CCHHHHHHHHHHHhcCCccccEeeecC
Confidence            33333344 79999999985 454433   3333334 3689999999865  5543   3333333454 899999988


Q ss_pred             CCCCCHH---HHHHHHhcC-CCCCeeecCCCCCCCHHHHH----HHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCC
Q 017279          221 CEDVGDV---GVMNLAYGC-PDLRSLDLCGCVCITDDSVI----ALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNK  292 (374)
Q Consensus       221 ~~~~~~~---~~~~l~~~~-~~L~~L~l~~~~~l~~~~l~----~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~  292 (374)
                      +. +++.   .+......+ ++|++|++++| .+++.+..    .+....++|+.|++++|. +++.+...+....    
T Consensus       177 n~-l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~~----  249 (362)
T 3goz_A          177 NN-LASKNCAELAKFLASIPASVTSLDLSAN-LLGLKSYAELAYIFSSIPNHVVSLNLCLNC-LHGPSLENLKLLK----  249 (362)
T ss_dssp             SC-GGGSCHHHHHHHHHTSCTTCCEEECTTS-CGGGSCHHHHHHHHHHSCTTCCEEECCSSC-CCCCCHHHHHHTT----
T ss_pred             CC-CchhhHHHHHHHHHhCCCCCCEEECCCC-CCChhHHHHHHHHHhcCCCCceEEECcCCC-CCcHHHHHHHHHH----
Confidence            64 4433   334444456 49999999995 56553332    222224689999999985 7776665555431    


Q ss_pred             CccccccccccCCCCCcEEecCCCC--CCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          293 PGIWESMKGRYDEEGLQSLNISQCT--ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       293 ~~~~~~~~~~~~~~~L~~L~l~~~~--~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                                ..+++|++|++++|.  .+++..+..+...++   .+++|+.|++++++ +...
T Consensus       250 ----------~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~---~l~~L~~LdL~~N~-l~~~  299 (362)
T 3goz_A          250 ----------DSLKHLQTVYLDYDIVKNMSKEQCKALGAAFP---NIQKIILVDKNGKE-IHPS  299 (362)
T ss_dssp             ----------TTTTTCSEEEEEHHHHTTCCHHHHHHHHTTST---TCCEEEEECTTSCB-CCGG
T ss_pred             ----------hcCCCccEEEeccCCccccCHHHHHHHHHHhc---cCCceEEEecCCCc-CCCc
Confidence                      145889999998853  477777777776554   45789999999886 5554

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.55  E-value=3.6e-13  Score=122.18  Aligned_cols=228  Identities=18%  Similarity=0.139  Sum_probs=150.9

Q ss_pred             HHHHHhhcCCCCcEEEeeCCCCCCChHHH---HHHHHhCC-CCCEEecCCCCCCCHHH---HHHHHhc-CCCCcEEeecC
Q 017279           96 LVLSLAPKLTKLQTLVLRQDKPQLEDNAV---EAIANSCH-DLQDLDLSKSFKLSDRS---LYALAHG-CPNLTRLNISG  167 (374)
Q Consensus        96 ~~~~~~~~~~~L~~L~l~~~~~~~~~~~~---~~l~~~~~-~L~~L~l~~~~~~~~~~---~~~l~~~-~~~L~~L~L~~  167 (374)
                      .++.+....++|+.|+++  .+.+++...   ......++ +|++|+++++ .+++..   +..+... +++|++|++++
T Consensus        13 ~~~~~~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~   89 (362)
T 3goz_A           13 PVEEFTSIPHGVTSLDLS--LNNLYSISTVELIQAFANTPASVTSLNLSGN-SLGFKNSDELVQILAAIPANVTSLNLSG   89 (362)
T ss_dssp             HHHHHHTSCTTCCEEECT--TSCGGGSCHHHHHHHHHTCCTTCCEEECCSS-CGGGSCHHHHHHHHHTSCTTCCEEECCS
T ss_pred             HHHHHHhCCCCceEEEcc--CCCCChHHHHHHHHHHHhCCCceeEEECcCC-CCCHHHHHHHHHHHhccCCCccEEECcC
Confidence            345566666779999999  455554333   23334577 8999999997 555433   3333333 38999999998


Q ss_pred             CCCCC---HHHHHHHHhcC-CCCcEEEcCCCccCccHHHHHHH---Hhc-CCCCCEEeccCCCCCCHHHH---HHHHhcC
Q 017279          168 CTSFS---DHALAYLCGFC-RKLKILNLCGCVKAATDYALQAI---GRN-CNQLQSLNLGWCEDVGDVGV---MNLAYGC  236 (374)
Q Consensus       168 ~~~~~---~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~~~~~l---~~~-~~~L~~L~l~~~~~~~~~~~---~~l~~~~  236 (374)
                      + .++   ...+......+ ++|++|+++++.  +++.....+   ... +++|++|+++++. +++.+.   .......
T Consensus        90 n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~--l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-l~~~~~~~l~~~l~~~  165 (362)
T 3goz_A           90 N-FLSYKSSDELVKTLAAIPFTITVLDLGWND--FSSKSSSEFKQAFSNLPASITSLNLRGND-LGIKSSDELIQILAAI  165 (362)
T ss_dssp             S-CGGGSCHHHHHHHHHTSCTTCCEEECCSSC--GGGSCHHHHHHHHTTSCTTCCEEECTTSC-GGGSCHHHHHHHHHTS
T ss_pred             C-cCChHHHHHHHHHHHhCCCCccEEECcCCc--CCcHHHHHHHHHHHhCCCceeEEEccCCc-CCHHHHHHHHHHHhcC
Confidence            5 444   33444444555 899999999866  554444333   333 4699999999864 554333   3333445


Q ss_pred             C-CCCeeecCCCCCCCH---HHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279          237 P-DLRSLDLCGCVCITD---DSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL  311 (374)
Q Consensus       237 ~-~L~~L~l~~~~~l~~---~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  311 (374)
                      + +|++|++++| .+++   ..+......+ ++|+.|++++|. +++.+...+......             ..++|++|
T Consensus       166 ~~~L~~L~Ls~n-~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~-i~~~~~~~l~~~l~~-------------~~~~L~~L  230 (362)
T 3goz_A          166 PANVNSLNLRGN-NLASKNCAELAKFLASIPASVTSLDLSANL-LGLKSYAELAYIFSS-------------IPNHVVSL  230 (362)
T ss_dssp             CTTCCEEECTTS-CGGGSCHHHHHHHHHTSCTTCCEEECTTSC-GGGSCHHHHHHHHHH-------------SCTTCCEE
T ss_pred             CccccEeeecCC-CCchhhHHHHHHHHHhCCCCCCEEECCCCC-CChhHHHHHHHHHhc-------------CCCCceEE
Confidence            5 9999999996 4543   3344444446 499999999996 777555544432100             02699999


Q ss_pred             ecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          312 NISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       312 ~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ++++ +.+++.+.+.+...+   ..+++|+.|++++|.
T Consensus       231 ~Ls~-N~l~~~~~~~l~~~~---~~l~~L~~L~L~~n~  264 (362)
T 3goz_A          231 NLCL-NCLHGPSLENLKLLK---DSLKHLQTVYLDYDI  264 (362)
T ss_dssp             ECCS-SCCCCCCHHHHHHTT---TTTTTCSEEEEEHHH
T ss_pred             ECcC-CCCCcHHHHHHHHHH---hcCCCccEEEeccCC
Confidence            9999 578876665554332   556889999999996

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.45  E-value=6.4e-12  Score=113.92  Aligned_cols=175  Identities=21%  Similarity=0.225  Sum_probs=104.2

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHh----CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHH
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANS----CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYL  179 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~----~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l  179 (374)
                      .++++.|+++  .+.+++.....+...    +++|++|+++++ .+++.++..+...+++|++|+|++| .+++.+...+
T Consensus        71 ~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L  146 (372)
T 3un9_A           71 LSSLRQLNLA--GVRMTPVKCTVVAAVLGSGRHALDEVNLASC-QLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL  146 (372)
T ss_dssp             HTTCCEEECT--TSCCCHHHHHHHHHHHSSCSSCEEEEECTTC-CCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred             HhhCCEEEec--CCCCCHHHHHHHHHHHhhCCCCceEEEecCC-CCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence            3567777777  455666554444432    246777777775 5666666666655667777777763 6666655544


Q ss_pred             Hh----cCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCCCCHHHHHHHH---hcCCCCCeeecCCCCC
Q 017279          180 CG----FCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCEDVGDVGVMNLA---YGCPDLRSLDLCGCVC  249 (374)
Q Consensus       180 ~~----~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~  249 (374)
                      ..    ..++|++|+|+++.  +++.....+   ...+++|++|+++++. +++.+...+.   ..+++|+.|++++| .
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n~--l~~~~~~~l~~~L~~~~~L~~L~Ls~N~-l~~~g~~~L~~~L~~~~~L~~L~Ls~N-~  222 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNNP--LTAAGVAVLMEGLAGNTSVTHLSLLHTG-LGDEGLELLAAQLDRNRQLQELNVAYN-G  222 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSSC--CHHHHHHHHHHHHHTCSSCCEEECTTSS-CHHHHHHHHHHHGGGCSCCCEEECCSS-C
T ss_pred             HHHHHhcCCccceeeCCCCC--CChHHHHHHHHHHhcCCCcCEEeCCCCC-CCcHHHHHHHHHHhcCCCcCeEECCCC-C
Confidence            32    34667777777654  555444333   2456667777776643 5555544332   34566777777763 5


Q ss_pred             CCHHHHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279          250 ITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS  287 (374)
Q Consensus       250 l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~  287 (374)
                      +++.+...+..   ..++|++|++++|. +++.++..+...
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N~-i~~~g~~~L~~~  262 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFNE-LSSEGRQVLRDL  262 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTSS-CCHHHHHHHHHC
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCCC-CCHHHHHHHHHH
Confidence            66655444433   35667777777664 677666666654

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.44  E-value=7.3e-13  Score=119.36  Aligned_cols=203  Identities=16%  Similarity=0.113  Sum_probs=93.8

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      +++|++|+++++......  .. ...+++|++|+++++. +.....   ...+++|++|+++++.  +....  . ...+
T Consensus       131 l~~L~~L~l~~n~~~~~~--~~-~~~l~~L~~L~l~~~~-~~~~~~---~~~l~~L~~L~l~~n~--l~~~~--~-~~~l  198 (347)
T 4fmz_A          131 LTKMYSLNLGANHNLSDL--SP-LSNMTGLNYLTVTESK-VKDVTP---IANLTDLYSLSLNYNQ--IEDIS--P-LASL  198 (347)
T ss_dssp             CTTCCEEECTTCTTCCCC--GG-GTTCTTCCEEECCSSC-CCCCGG---GGGCTTCSEEECTTSC--CCCCG--G-GGGC
T ss_pred             CCceeEEECCCCCCcccc--cc-hhhCCCCcEEEecCCC-cCCchh---hccCCCCCEEEccCCc--ccccc--c-ccCC
Confidence            455555555554222211  11 1234555555555432 211110   2345566666665543  11111  0 2345


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-C
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-V  289 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~  289 (374)
                      ++|+.|+++++. +.+...   ...+++|+.|++++|. ++....   ...+++|+.|++++|. ++..  ..+.... .
T Consensus       199 ~~L~~L~l~~n~-l~~~~~---~~~~~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n~-l~~~--~~~~~l~~L  267 (347)
T 4fmz_A          199 TSLHYFTAYVNQ-ITDITP---VANMTRLNSLKIGNNK-ITDLSP---LANLSQLTWLEIGTNQ-ISDI--NAVKDLTKL  267 (347)
T ss_dssp             TTCCEEECCSSC-CCCCGG---GGGCTTCCEEECCSSC-CCCCGG---GTTCTTCCEEECCSSC-CCCC--GGGTTCTTC
T ss_pred             CccceeecccCC-CCCCch---hhcCCcCCEEEccCCc-cCCCcc---hhcCCCCCEEECCCCc-cCCC--hhHhcCCCc
Confidence            555555555432 222111   3345666666666642 322111   2345666666666653 3321  1111100 0


Q ss_pred             C---CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCccccc
Q 017279          290 K---NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRT  365 (374)
Q Consensus       290 ~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~  365 (374)
                      +   ...........+..+++|++|++++| .+++.....+       ..+++|+.|++++|+ +++..-...+.+++.
T Consensus       268 ~~L~l~~n~l~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~l-------~~l~~L~~L~L~~n~-l~~~~~~~~l~~L~~  337 (347)
T 4fmz_A          268 KMLNVGSNQISDISVLNNLSQLNSLFLNNN-QLGNEDMEVI-------GGLTNLTTLFLSQNH-ITDIRPLASLSKMDS  337 (347)
T ss_dssp             CEEECCSSCCCCCGGGGGCTTCSEEECCSS-CCCGGGHHHH-------HTCTTCSEEECCSSS-CCCCGGGGGCTTCSE
T ss_pred             CEEEccCCccCCChhhcCCCCCCEEECcCC-cCCCcChhHh-------hccccCCEEEccCCc-cccccChhhhhccce
Confidence            0   00001111123556788888888884 5665544444       457888999999986 666544444444443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.42  E-value=1.6e-11  Score=111.23  Aligned_cols=194  Identities=19%  Similarity=0.169  Sum_probs=125.4

Q ss_pred             hhccCceeecccccccchH--HHHHHh-hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHH
Q 017279           77 ICLGLTHLSLSWCKNNMNN--LVLSLA-PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL  153 (374)
Q Consensus        77 ~~~~l~~L~l~~~~~~~~~--~~~~~~-~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l  153 (374)
                      +...++.++++.+......  .+.... ...++|+.|+++  .+.+++.....+...+++|++|+++++ .+++.+...+
T Consensus        70 ~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls--~n~l~~~~~~~l~~~L~~L~~L~Ls~n-~l~~~~~~~L  146 (372)
T 3un9_A           70 VLSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLA--SCQLDPAGLRTLLPVFLRARKLGLQLN-SLGPEACKDL  146 (372)
T ss_dssp             HHTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECT--TCCCCHHHHHHTHHHHHTEEEEECCSS-CCCHHHHHHH
T ss_pred             HHhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEec--CCCCCHHHHHHHHHHHHhccHhhcCCC-CCCHHHHHHH
Confidence            3455888888877644322  122222 234688888888  567777777777666778888888886 6777766655


Q ss_pred             Hh----cCCCCcEEeecCCCCCCHHHHHHH---HhcCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCC
Q 017279          154 AH----GCPNLTRLNISGCTSFSDHALAYL---CGFCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCED  223 (374)
Q Consensus       154 ~~----~~~~L~~L~L~~~~~~~~~~~~~l---~~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~  223 (374)
                      ..    ..++|++|+|++| .+++.+...+   ...+++|++|+|+++.  +.+.....+   ....++|+.|+++++. 
T Consensus       147 ~~~L~~~~~~L~~L~Ls~n-~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~--l~~~g~~~L~~~L~~~~~L~~L~Ls~N~-  222 (372)
T 3un9_A          147 RDLLLHDQCQITTLRLSNN-PLTAAGVAVLMEGLAGNTSVTHLSLLHTG--LGDEGLELLAAQLDRNRQLQELNVAYNG-  222 (372)
T ss_dssp             HHHHHSTTCCCCEEECCSS-CCHHHHHHHHHHHHHTCSSCCEEECTTSS--CHHHHHHHHHHHGGGCSCCCEEECCSSC-
T ss_pred             HHHHHhcCCccceeeCCCC-CCChHHHHHHHHHHhcCCCcCEEeCCCCC--CCcHHHHHHHHHHhcCCCcCeEECCCCC-
Confidence            43    3578888888885 6766554443   3457888888888855  666555443   3456788888888854 


Q ss_pred             CCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHHhcC-CC---CceEe--cCCCCCCCHH
Q 017279          224 VGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALANGC-PH---LRSLG--LYYCRNITDR  279 (374)
Q Consensus       224 ~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~---L~~L~--l~~~~~i~~~  279 (374)
                      +++.+...+..   .+++|++|++++| .+++.+...+.... +.   |+.+.  +..+. ++++
T Consensus       223 i~~~g~~~l~~~L~~~~~L~~L~Ls~N-~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~-~~~~  285 (372)
T 3un9_A          223 AGDTAALALARAAREHPSLELLHLYFN-ELSSEGRQVLRDLGGAAEGGARVVVSLTEGTA-VSEY  285 (372)
T ss_dssp             CCHHHHHHHHHHHHHCSSCCEEECTTS-SCCHHHHHHHHHCC------CEEECCCC-----CHHH
T ss_pred             CCHHHHHHHHHHHHhCCCCCEEeccCC-CCCHHHHHHHHHHhcCCCccchhhHhhhcCCc-cCHH
Confidence            77766555433   4688888888884 68888877776531 11   55665  44432 4444

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=99.39  E-value=1.8e-12  Score=116.84  Aligned_cols=215  Identities=20%  Similarity=0.161  Sum_probs=111.5

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++++.......    ...+++|+.|+++ .+.......  . ...+++|++|+++++.......    ...++
T Consensus       110 ~~L~~L~l~~n~i~~~~~----~~~l~~L~~L~l~-~n~~~~~~~--~-~~~l~~L~~L~l~~~~~~~~~~----~~~l~  177 (347)
T 4fmz_A          110 TNLRELYLNEDNISDISP----LANLTKMYSLNLG-ANHNLSDLS--P-LSNMTGLNYLTVTESKVKDVTP----IANLT  177 (347)
T ss_dssp             TTCSEEECTTSCCCCCGG----GTTCTTCCEEECT-TCTTCCCCG--G-GTTCTTCCEEECCSSCCCCCGG----GGGCT
T ss_pred             CcCCEEECcCCcccCchh----hccCCceeEEECC-CCCCccccc--c-hhhCCCCcEEEecCCCcCCchh----hccCC
Confidence            457888887765432211    4466777777776 332222111  1 2335566666666542211111    22355


Q ss_pred             CCcEEeecCCCCCCHHHH--------------------HHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEec
Q 017279          159 NLTRLNISGCTSFSDHAL--------------------AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNL  218 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~--------------------~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l  218 (374)
                      +|++|+++++ .+.....                    .. ...+++|++|+++++.  +.....   ...+++|++|++
T Consensus       178 ~L~~L~l~~n-~l~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~~L~~L~l~~n~--l~~~~~---~~~l~~L~~L~l  250 (347)
T 4fmz_A          178 DLYSLSLNYN-QIEDISPLASLTSLHYFTAYVNQITDITP-VANMTRLNSLKIGNNK--ITDLSP---LANLSQLTWLEI  250 (347)
T ss_dssp             TCSEEECTTS-CCCCCGGGGGCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSC--CCCCGG---GTTCTTCCEEEC
T ss_pred             CCCEEEccCC-cccccccccCCCccceeecccCCCCCCch-hhcCCcCCEEEccCCc--cCCCcc---hhcCCCCCEEEC
Confidence            5555555543 2221100                    00 2335556666665543  221111   334566666666


Q ss_pred             cCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccc
Q 017279          219 GWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWES  298 (374)
Q Consensus       219 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~  298 (374)
                      +++. +++.   .....+++|+.|++++| .++..  . ....+++|+.|++++|. +++.....+.             
T Consensus       251 ~~n~-l~~~---~~~~~l~~L~~L~l~~n-~l~~~--~-~~~~l~~L~~L~L~~n~-l~~~~~~~l~-------------  308 (347)
T 4fmz_A          251 GTNQ-ISDI---NAVKDLTKLKMLNVGSN-QISDI--S-VLNNLSQLNSLFLNNNQ-LGNEDMEVIG-------------  308 (347)
T ss_dssp             CSSC-CCCC---GGGTTCTTCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCGGGHHHHH-------------
T ss_pred             CCCc-cCCC---hhHhcCCCcCEEEccCC-ccCCC--h-hhcCCCCCCEEECcCCc-CCCcChhHhh-------------
Confidence            6543 3321   11234566666666664 33321  1 12346667777776664 5544444444             


Q ss_pred             cccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          299 MKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       299 ~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                           .+++|++|++++| .+++.         +.+..+++|+.|++++|+
T Consensus       309 -----~l~~L~~L~L~~n-~l~~~---------~~~~~l~~L~~L~l~~N~  344 (347)
T 4fmz_A          309 -----GLTNLTTLFLSQN-HITDI---------RPLASLSKMDSADFANQV  344 (347)
T ss_dssp             -----TCTTCSEEECCSS-SCCCC---------GGGGGCTTCSEESSSCC-
T ss_pred             -----ccccCCEEEccCC-ccccc---------cChhhhhccceeehhhhc
Confidence                 4489999999995 46531         224678999999999996

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.39  E-value=1.4e-13  Score=109.33  Aligned_cols=72  Identities=21%  Similarity=0.395  Sum_probs=35.5

Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHH
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLA  285 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~  285 (374)
                      +|+.|++++|. +++.++..+ .+|++|++|++++|..+++.++..+...   +++|++|++++|..|++.++..+.
T Consensus        62 ~L~~LDLs~~~-Itd~GL~~L-~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~  136 (176)
T 3e4g_A           62 KIQAIDATDSC-IMSIGFDHM-EGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALH  136 (176)
T ss_dssp             CEEEEEEESCC-CCGGGGGGG-TTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGG
T ss_pred             eEeEEeCcCCC-ccHHHHHHh-cCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHh
Confidence            35555555543 555444444 2455555555555555555555555431   234555555555555555555443

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=99.35  E-value=6.3e-13  Score=105.64  Aligned_cols=92  Identities=15%  Similarity=0.264  Sum_probs=66.2

Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc---CCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      +|++|++++|.  +++.++..+. .|++|++|++++|..++|.++..+...   +++|++|++++|..+|+.++..+.+ 
T Consensus        62 ~L~~LDLs~~~--Itd~GL~~L~-~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~-  137 (176)
T 3e4g_A           62 KIQAIDATDSC--IMSIGFDHME-GLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHH-  137 (176)
T ss_dssp             CEEEEEEESCC--CCGGGGGGGT-TCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGG-
T ss_pred             eEeEEeCcCCC--ccHHHHHHhc-CCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhc-
Confidence            57777777765  6676666663 577777777777777777777777652   4567777777777777777777653 


Q ss_pred             CCCCceEecCCCCCCCHHH
Q 017279          262 CPHLRSLGLYYCRNITDRA  280 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~  280 (374)
                      +++|++|++++|+.+++.+
T Consensus       138 ~~~L~~L~L~~c~~Itd~g  156 (176)
T 3e4g_A          138 FRNLKYLFLSDLPGVKEKE  156 (176)
T ss_dssp             CTTCCEEEEESCTTCCCHH
T ss_pred             CCCCCEEECCCCCCCCchH
Confidence            7777777777777777654

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.25  E-value=2.5e-13  Score=127.09  Aligned_cols=110  Identities=18%  Similarity=0.134  Sum_probs=49.5

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH-HHhcCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGCP  158 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~~  158 (374)
                      .+++|+++.+..... .....+..+++|++|+++  .+.+.......+ ..+++|++|+++++ .++...+.. ....++
T Consensus        55 ~L~~L~L~~n~~~~~-i~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~~~~~l~  129 (455)
T 3v47_A           55 DLQFLKVEQQTPGLV-IRNNTFRGLSSLIILKLD--YNQFLQLETGAF-NGLANLEVLTLTQC-NLDGAVLSGNFFKPLT  129 (455)
T ss_dssp             TCCEEECCCCSTTCE-ECTTTTTTCTTCCEEECT--TCTTCEECTTTT-TTCTTCCEEECTTS-CCBTHHHHSSTTTTCT
T ss_pred             cccEEECcCCcccce-ECcccccccccCCEEeCC--CCccCccChhhc-cCcccCCEEeCCCC-CCCccccCcccccCcc
Confidence            366666665432110 011223355666666666  333332211111 23566666666665 333322221 123356


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCc
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  195 (374)
                      +|++|+++++ .+.......+...+++|++|+++++.
T Consensus       130 ~L~~L~L~~n-~l~~~~~~~~~~~l~~L~~L~L~~n~  165 (455)
T 3v47_A          130 SLEMLVLRDN-NIKKIQPASFFLNMRRFHVLDLTFNK  165 (455)
T ss_dssp             TCCEEECCSS-BCCSCCCCGGGGGCTTCCEEECTTCC
T ss_pred             cCCEEECCCC-ccCccCcccccCCCCcccEEeCCCCc
Confidence            6666666653 23221111123346666666666543

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.23  E-value=1.5e-13  Score=122.89  Aligned_cols=59  Identities=24%  Similarity=0.337  Sum_probs=24.5

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +++|++|+++++. ++.  +......+++|++|++++| .++.  +..-...+++|+.|++++|.
T Consensus       182 l~~L~~L~L~~n~-l~~--lp~~l~~l~~L~~L~L~~N-~l~~--l~~~l~~l~~L~~L~Ls~n~  240 (328)
T 4fcg_A          182 LVNLQSLRLEWTG-IRS--LPASIANLQNLKSLKIRNS-PLSA--LGPAIHHLPKLEELDLRGCT  240 (328)
T ss_dssp             STTCCEEEEEEEC-CCC--CCGGGGGCTTCCEEEEESS-CCCC--CCGGGGGCTTCCEEECTTCT
T ss_pred             CCCCCEEECcCCC-cCc--chHhhcCCCCCCEEEccCC-CCCc--CchhhccCCCCCEEECcCCc
Confidence            4555555555432 221  1111234455555555553 2221  11112235555555555543

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=99.22  E-value=1.2e-12  Score=122.50  Aligned_cols=250  Identities=13%  Similarity=0.058  Sum_probs=121.4

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHH-HHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEA-IANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  157 (374)
                      ..+++|+++++....  .....+..+++|++|+++  .+.+++..... ....+++|++|+++++ .++......+...+
T Consensus        79 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~l  153 (455)
T 3v47_A           79 SSLIILKLDYNQFLQ--LETGAFNGLANLEVLTLT--QCNLDGAVLSGNFFKPLTSLEMLVLRDN-NIKKIQPASFFLNM  153 (455)
T ss_dssp             TTCCEEECTTCTTCE--ECTTTTTTCTTCCEEECT--TSCCBTHHHHSSTTTTCTTCCEEECCSS-BCCSCCCCGGGGGC
T ss_pred             ccCCEEeCCCCccCc--cChhhccCcccCCEEeCC--CCCCCccccCcccccCcccCCEEECCCC-ccCccCcccccCCC
Confidence            447777777654321  112234456777777777  44454432221 1233667777777765 23222111222346


Q ss_pred             CCCcEEeecCCCCCCH---HHHHHH------------------------------HhcCCCCcEEEcCCCccCccHHHHH
Q 017279          158 PNLTRLNISGCTSFSD---HALAYL------------------------------CGFCRKLKILNLCGCVKAATDYALQ  204 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~---~~~~~l------------------------------~~~~~~L~~L~L~~~~~~~~~~~~~  204 (374)
                      ++|++|+++++. +..   ..+..+                              ...+++|++|+++++.  +......
T Consensus       154 ~~L~~L~L~~n~-l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~  230 (455)
T 3v47_A          154 RRFHVLDLTFNK-VKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNG--FKESMAK  230 (455)
T ss_dssp             TTCCEEECTTCC-BSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSC--CCHHHHH
T ss_pred             CcccEEeCCCCc-ccccChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCc--ccccchh
Confidence            677777776532 211   111000                              1123567777777654  3433332


Q ss_pred             HHHh--------------------------------------cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCC
Q 017279          205 AIGR--------------------------------------NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCG  246 (374)
Q Consensus       205 ~l~~--------------------------------------~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~  246 (374)
                      .+..                                      ..++|+.|+++++. +.+. .......+++|++|++++
T Consensus       231 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~Ls~  308 (455)
T 3v47_A          231 RFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSK-IFAL-LKSVFSHFTDLEQLTLAQ  308 (455)
T ss_dssp             HHHHHTTTCCEEEEECTTCTTTSCCTTCCSSCCCCTTTTGGGTTSCCCEEECCSSC-CCEE-CTTTTTTCTTCCEEECTT
T ss_pred             hhhccccccceeeEeeccccccccccchhhhccCcccccccccccCceEEEecCcc-cccc-chhhcccCCCCCEEECCC
Confidence            2221                                      12467777776643 3321 112234567788888877


Q ss_pred             CCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCC-----ccccccccccCCCCCcEEecCCCCCCC
Q 017279          247 CVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKP-----GIWESMKGRYDEEGLQSLNISQCTALT  320 (374)
Q Consensus       247 ~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~-----~~~~~~~~~~~~~~L~~L~l~~~~~l~  320 (374)
                      | .++......+ ..+++|+.|++++|. ++......+.... ++...     ........+..+++|++|++++ +.++
T Consensus       309 n-~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~-N~l~  384 (455)
T 3v47_A          309 N-EINKIDDNAF-WGLTHLLKLNLSQNF-LGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDT-NQLK  384 (455)
T ss_dssp             S-CCCEECTTTT-TTCTTCCEEECCSSC-CCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS-SCCS
T ss_pred             C-cccccChhHh-cCcccCCEEECCCCc-cCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCC-Cccc
Confidence            4 3432211112 246777777777764 4321111111110 00000     0001112356678888888887 4555


Q ss_pred             HHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          321 PPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       321 ~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ....       ..+..+++|+.|++++++
T Consensus       385 ~~~~-------~~~~~l~~L~~L~l~~N~  406 (455)
T 3v47_A          385 SVPD-------GIFDRLTSLQKIWLHTNP  406 (455)
T ss_dssp             CCCT-------TTTTTCTTCCEEECCSSC
T ss_pred             cCCH-------hHhccCCcccEEEccCCC
Confidence            2110       023567888888888775

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.19  E-value=1.2e-12  Score=118.31  Aligned_cols=233  Identities=14%  Similarity=0.072  Sum_probs=113.0

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++++....  .....+..+++|+.|+++  .+.++..... ....+++|++|+++++ .++.-........+++
T Consensus        77 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~-~~~~l~~L~~L~L~~n-~l~~l~~~~~~~~l~~  150 (353)
T 2z80_A           77 NLQALVLTSNGINT--IEEDSFSSLGSLEHLDLS--YNYLSNLSSS-WFKPLSSLTFLNLLGN-PYKTLGETSLFSHLTK  150 (353)
T ss_dssp             TCCEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCSSCCHH-HHTTCTTCSEEECTTC-CCSSSCSSCSCTTCTT
T ss_pred             CCCEEECCCCccCc--cCHhhcCCCCCCCEEECC--CCcCCcCCHh-HhCCCccCCEEECCCC-CCcccCchhhhccCCC
Confidence            36666665543221  111223355666666666  3333321111 1233566666666664 2221000001223566


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++..+.... ......+++|++|+++++.  +.... ......+++|++|+++++. ++... ......+++|
T Consensus       151 L~~L~l~~n~~~~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~-~~~l~~l~~L~~L~l~~n~-l~~~~-~~~~~~~~~L  224 (353)
T 2z80_A          151 LQILRVGNMDTFTKIQ-RKDFAGLTFLEELEIDASD--LQSYE-PKSLKSIQNVSHLILHMKQ-HILLL-EIFVDVTSSV  224 (353)
T ss_dssp             CCEEEEEESSSCCEEC-TTTTTTCCEEEEEEEEETT--CCEEC-TTTTTTCSEEEEEEEECSC-STTHH-HHHHHHTTTE
T ss_pred             CcEEECCCCccccccC-HHHccCCCCCCEEECCCCC--cCccC-HHHHhccccCCeecCCCCc-cccch-hhhhhhcccc
Confidence            6666666542222110 0112235666666666543  22110 1112345666666666543 33221 2223345667


Q ss_pred             CeeecCCCCCCCHHHHHH--HHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIA--LANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~--l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +.|+++++ .++......  .....+.++.+++.++. +++..+..+...              +..+++|++|+++++ 
T Consensus       225 ~~L~L~~n-~l~~~~~~~l~~~~~~~~l~~l~L~~~~-l~~~~l~~l~~~--------------l~~l~~L~~L~Ls~N-  287 (353)
T 2z80_A          225 ECLELRDT-DLDTFHFSELSTGETNSLIKKFTFRNVK-ITDESLFQVMKL--------------LNQISGLLELEFSRN-  287 (353)
T ss_dssp             EEEEEESC-BCTTCCCC------CCCCCCEEEEESCB-CCHHHHHHHHHH--------------HHTCTTCCEEECCSS-
T ss_pred             cEEECCCC-ccccccccccccccccchhhcccccccc-ccCcchhhhHHH--------------HhcccCCCEEECCCC-
Confidence            77777664 333211110  11235566666666663 665555444321              234689999999984 


Q ss_pred             CCCHHHHHHHHhhCCC--ccCCCCCceEEecCCcc
Q 017279          318 ALTPPAVQALCDTFPA--LHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~--l~~~~~L~~L~ls~C~~  350 (374)
                      .++.         +|.  +..+++|+.|++++++-
T Consensus       288 ~l~~---------i~~~~~~~l~~L~~L~L~~N~~  313 (353)
T 2z80_A          288 QLKS---------VPDGIFDRLTSLQKIWLHTNPW  313 (353)
T ss_dssp             CCCC---------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             CCCc---------cCHHHHhcCCCCCEEEeeCCCc
Confidence            5652         231  36789999999999963

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.17  E-value=3.1e-13  Score=120.79  Aligned_cols=222  Identities=20%  Similarity=0.238  Sum_probs=141.9

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++.+...  . ++.....+++|++|+++  .+.+.. ....+ ..+++|++|+++++ .++  .+......++
T Consensus        81 ~~l~~L~L~~n~l~--~-lp~~l~~l~~L~~L~L~--~n~l~~-lp~~~-~~l~~L~~L~Ls~n-~l~--~lp~~l~~l~  150 (328)
T 4fcg_A           81 PGRVALELRSVPLP--Q-FPDQAFRLSHLQHMTID--AAGLME-LPDTM-QQFAGLETLTLARN-PLR--ALPASIASLN  150 (328)
T ss_dssp             TTCCEEEEESSCCS--S-CCSCGGGGTTCSEEEEE--SSCCCC-CCSCG-GGGTTCSEEEEESC-CCC--CCCGGGGGCT
T ss_pred             cceeEEEccCCCch--h-cChhhhhCCCCCEEECC--CCCccc-hhHHH-hccCCCCEEECCCC-ccc--cCcHHHhcCc
Confidence            45888999876543  1 22223458899999999  444441 11222 45789999999987 343  1222234589


Q ss_pred             CCcEEeecCCCCCCHHHHH-------HHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHH
Q 017279          159 NLTRLNISGCTSFSDHALA-------YLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN  231 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~-------~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~  231 (374)
                      +|++|++++|.........       .....+++|++|+++++.  +.  .+......+++|++|+++++. +..  +..
T Consensus       151 ~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~--l~--~lp~~l~~l~~L~~L~L~~N~-l~~--l~~  223 (328)
T 4fcg_A          151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTG--IR--SLPASIANLQNLKSLKIRNSP-LSA--LGP  223 (328)
T ss_dssp             TCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEEC--CC--CCCGGGGGCTTCCEEEEESSC-CCC--CCG
T ss_pred             CCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCC--cC--cchHhhcCCCCCCEEEccCCC-CCc--Cch
Confidence            9999999876433211000       001238999999999854  33  222335578999999999864 432  222


Q ss_pred             HHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEE
Q 017279          232 LAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSL  311 (374)
Q Consensus       232 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L  311 (374)
                      ....+++|+.|++++|.....  +......+++|+.|++++|.....                   .+..+..+++|++|
T Consensus       224 ~l~~l~~L~~L~Ls~n~~~~~--~p~~~~~l~~L~~L~L~~n~~~~~-------------------~p~~~~~l~~L~~L  282 (328)
T 4fcg_A          224 AIHHLPKLEELDLRGCTALRN--YPPIFGGRAPLKRLILKDCSNLLT-------------------LPLDIHRLTQLEKL  282 (328)
T ss_dssp             GGGGCTTCCEEECTTCTTCCB--CCCCTTCCCCCCEEECTTCTTCCB-------------------CCTTGGGCTTCCEE
T ss_pred             hhccCCCCCEEECcCCcchhh--hHHHhcCCCCCCEEECCCCCchhh-------------------cchhhhcCCCCCEE
Confidence            245789999999999754431  112223589999999999863321                   01123356999999


Q ss_pred             ecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecC
Q 017279          312 NISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSG  347 (374)
Q Consensus       312 ~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~  347 (374)
                      ++++|....         .+| .+..+++|+.+++..
T Consensus       283 ~L~~n~~~~---------~iP~~l~~L~~L~~l~l~~  310 (328)
T 4fcg_A          283 DLRGCVNLS---------RLPSLIAQLPANCIILVPP  310 (328)
T ss_dssp             ECTTCTTCC---------CCCGGGGGSCTTCEEECCG
T ss_pred             eCCCCCchh---------hccHHHhhccCceEEeCCH
Confidence            999976544         234 457788999998874

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.16  E-value=1.6e-10  Score=108.43  Aligned_cols=210  Identities=18%  Similarity=0.205  Sum_probs=98.9

Q ss_pred             hhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHH
Q 017279          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (374)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~  180 (374)
                      ...+++|+.|+++  .+.+....  . ...+++|++|+++++. +.....   ...+++|+.|+++++ .+...  . ..
T Consensus       173 ~~~l~~L~~L~l~--~n~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~l~~n-~l~~~--~-~l  239 (466)
T 1o6v_A          173 LANLTTLERLDIS--SNKVSDIS--V-LAKLTNLESLIATNNQ-ISDITP---LGILTNLDELSLNGN-QLKDI--G-TL  239 (466)
T ss_dssp             GTTCTTCCEEECC--SSCCCCCG--G-GGGCTTCSEEECCSSC-CCCCGG---GGGCTTCCEEECCSS-CCCCC--G-GG
T ss_pred             hccCCCCCEEECc--CCcCCCCh--h-hccCCCCCEEEecCCc-cccccc---ccccCCCCEEECCCC-Ccccc--h-hh
Confidence            3456677777776  23333211  1 2346667777776652 222111   223566666666653 23221  1 12


Q ss_pred             hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279          181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~  260 (374)
                      ..+++|++|+++++.  +....  . ...+++|+.|+++++. +.+..  . ...+++|+.|++++|. ++...  . ..
T Consensus       240 ~~l~~L~~L~l~~n~--l~~~~--~-~~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~--~-~~  306 (466)
T 1o6v_A          240 ASLTNLTDLDLANNQ--ISNLA--P-LSGLTKLTELKLGANQ-ISNIS--P-LAGLTALTNLELNENQ-LEDIS--P-IS  306 (466)
T ss_dssp             GGCTTCSEEECCSSC--CCCCG--G-GTTCTTCSEEECCSSC-CCCCG--G-GTTCTTCSEEECCSSC-CSCCG--G-GG
T ss_pred             hcCCCCCEEECCCCc--cccch--h-hhcCCCCCEEECCCCc-cCccc--c-ccCCCccCeEEcCCCc-ccCch--h-hc
Confidence            345666666666543  22111  1 3345666666666543 22211  1 2345666666666642 32111  1 22


Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHhcC-CC---CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccC
Q 017279          261 GCPHLRSLGLYYCRNITDRAIYSLAQSG-VK---NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHT  336 (374)
Q Consensus       261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~---~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~  336 (374)
                      .+++|+.|++++|. +++...  +.... .+   ...........+..+++|+.|++++| .+++..        | +..
T Consensus       307 ~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n-~l~~~~--------~-~~~  373 (466)
T 1o6v_A          307 NLKNLTYLTLYFNN-ISDISP--VSSLTKLQRLFFYNNKVSDVSSLANLTNINWLSAGHN-QISDLT--------P-LAN  373 (466)
T ss_dssp             GCTTCSEEECCSSC-CSCCGG--GGGCTTCCEEECCSSCCCCCGGGTTCTTCCEEECCSS-CCCBCG--------G-GTT
T ss_pred             CCCCCCEEECcCCc-CCCchh--hccCccCCEeECCCCccCCchhhccCCCCCEEeCCCC-ccCccc--------h-hhc
Confidence            35666666666553 332110  11000 00   00000011123456688888888874 454311        1 467


Q ss_pred             CCCCceEEecCCc
Q 017279          337 CSGRHSLVMSGCL  349 (374)
Q Consensus       337 ~~~L~~L~ls~C~  349 (374)
                      +++|+.|++++|+
T Consensus       374 l~~L~~L~l~~n~  386 (466)
T 1o6v_A          374 LTRITQLGLNDQA  386 (466)
T ss_dssp             CTTCCEEECCCEE
T ss_pred             CCCCCEEeccCCc
Confidence            7888888888884

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.16  E-value=5.6e-13  Score=116.73  Aligned_cols=207  Identities=18%  Similarity=0.125  Sum_probs=109.1

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  183 (374)
                      .++++.|+++  .+.++......+ ..+++|++|+++++ .++......+ ..+++|++|+++++..+.... ......+
T Consensus        31 ~~~l~~L~l~--~n~i~~~~~~~~-~~~~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~-~~~~~~l  104 (285)
T 1ozn_A           31 PAASQRIFLH--GNRISHVPAASF-RACRNLTILWLHSN-VLARIDAAAF-TGLALLEQLDLSDNAQLRSVD-PATFHGL  104 (285)
T ss_dssp             CTTCSEEECT--TSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSCTTCCCCC-TTTTTTC
T ss_pred             CCCceEEEee--CCcCCccCHHHc-ccCCCCCEEECCCC-ccceeCHhhc-CCccCCCEEeCCCCCCccccC-HHHhcCC
Confidence            3567777777  344433221112 33677777777765 3332111112 236777777777643232211 1122346


Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      ++|++|+++++.  +.... ......+++|++|+++++. ++... ......+++|+.|+++++ .++.... .....++
T Consensus       105 ~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~  177 (285)
T 1ozn_A          105 GRLHTLHLDRCG--LQELG-PGLFRGLAALQYLYLQDNA-LQALP-DDTFRDLGNLTHLFLHGN-RISSVPE-RAFRGLH  177 (285)
T ss_dssp             TTCCEEECTTSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCEECT-TTTTTCT
T ss_pred             cCCCEEECCCCc--CCEEC-HhHhhCCcCCCEEECCCCc-ccccC-HhHhccCCCccEEECCCC-cccccCH-HHhcCcc
Confidence            778888877754  22111 1223456778888887643 32211 111235677888888874 3432111 1122467


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceE
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSL  343 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L  343 (374)
                      +|+.|+++++. ++....                  ..+..+++|+.|+++++ .++......       +..+++|+.|
T Consensus       178 ~L~~L~l~~n~-l~~~~~------------------~~~~~l~~L~~L~l~~n-~l~~~~~~~-------~~~l~~L~~L  230 (285)
T 1ozn_A          178 SLDRLLLHQNR-VAHVHP------------------HAFRDLGRLMTLYLFAN-NLSALPTEA-------LAPLRALQYL  230 (285)
T ss_dssp             TCCEEECCSSC-CCEECT------------------TTTTTCTTCCEEECCSS-CCSCCCHHH-------HTTCTTCCEE
T ss_pred             ccCEEECCCCc-ccccCH------------------hHccCcccccEeeCCCC-cCCcCCHHH-------cccCcccCEE
Confidence            78888887774 432111                  11234578888888873 555422222       2456778888


Q ss_pred             EecCCcc
Q 017279          344 VMSGCLN  350 (374)
Q Consensus       344 ~ls~C~~  350 (374)
                      ++++++-
T Consensus       231 ~l~~N~~  237 (285)
T 1ozn_A          231 RLNDNPW  237 (285)
T ss_dssp             ECCSSCE
T ss_pred             eccCCCc
Confidence            8887753

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.15  E-value=3.5e-11  Score=106.44  Aligned_cols=168  Identities=17%  Similarity=0.225  Sum_probs=86.3

Q ss_pred             hCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       130 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      .+++|++|+++++ .+.+..  . ...+++|++|+++++ .+...  . ....+++|++|+++++.  +...  .. ...
T Consensus        61 ~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n-~l~~~--~-~~~~l~~L~~L~l~~n~--l~~~--~~-l~~  127 (308)
T 1h6u_A           61 YLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGN-PLKNV--S-AIAGLQSIKTLDLTSTQ--ITDV--TP-LAG  127 (308)
T ss_dssp             GCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSC-CCSCC--G-GGTTCTTCCEEECTTSC--CCCC--GG-GTT
T ss_pred             ccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCC-cCCCc--h-hhcCCCCCCEEECCCCC--CCCc--hh-hcC
Confidence            3566666666664 222211  1 233566666666653 23221  1 13346666777766644  2221  11 345


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV  289 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~  289 (374)
                      +++|+.|+++++. +++..  . ...+++|+.|++++| .+++..  . ...+++|+.|+++++. +++...  +     
T Consensus       128 l~~L~~L~l~~n~-l~~~~--~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~--l-----  191 (308)
T 1h6u_A          128 LSNLQVLYLDLNQ-ITNIS--P-LAGLTNLQYLSIGNA-QVSDLT--P-LANLSKLTTLKADDNK-ISDISP--L-----  191 (308)
T ss_dssp             CTTCCEEECCSSC-CCCCG--G-GGGCTTCCEEECCSS-CCCCCG--G-GTTCTTCCEEECCSSC-CCCCGG--G-----
T ss_pred             CCCCCEEECCCCc-cCcCc--c-ccCCCCccEEEccCC-cCCCCh--h-hcCCCCCCEEECCCCc-cCcChh--h-----
Confidence            6677777776643 32211  1 345667777777764 343211  1 2346777777777664 332110  1     


Q ss_pred             CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                                   ..+++|++|+++++ .+++.         +.+..+++|+.|++++|+
T Consensus       192 -------------~~l~~L~~L~L~~N-~l~~~---------~~l~~l~~L~~L~l~~N~  228 (308)
T 1h6u_A          192 -------------ASLPNLIEVHLKNN-QISDV---------SPLANTSNLFIVTLTNQT  228 (308)
T ss_dssp             -------------GGCTTCCEEECTTS-CCCBC---------GGGTTCTTCCEEEEEEEE
T ss_pred             -------------cCCCCCCEEEccCC-ccCcc---------ccccCCCCCCEEEccCCe
Confidence                         13467777777773 45421         123566777777777764

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=99.14  E-value=4.4e-10  Score=105.37  Aligned_cols=231  Identities=19%  Similarity=0.161  Sum_probs=143.9

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++.+......    ....+++|+.|.+.  +.......    ...+++|++|+++++. +...  .. ...++
T Consensus       134 ~~L~~L~l~~n~l~~~~----~~~~l~~L~~L~l~--~~~~~~~~----~~~l~~L~~L~l~~n~-l~~~--~~-l~~l~  199 (466)
T 1o6v_A          134 TNLNRLELSSNTISDIS----ALSGLTSLQQLSFG--NQVTDLKP----LANLTTLERLDISSNK-VSDI--SV-LAKLT  199 (466)
T ss_dssp             TTCSEEEEEEEEECCCG----GGTTCTTCSEEEEE--ESCCCCGG----GTTCTTCCEEECCSSC-CCCC--GG-GGGCT
T ss_pred             CCCCEEECCCCccCCCh----hhccCCcccEeecC--CcccCchh----hccCCCCCEEECcCCc-CCCC--hh-hccCC
Confidence            55899999887644321    25678999999998  22222111    3458999999999974 3332  22 34589


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++. +....  . ...+++|++|+++++.  +...  . ....+++|+.|+++++. +....  . ...+++
T Consensus       200 ~L~~L~l~~n~-l~~~~--~-~~~l~~L~~L~l~~n~--l~~~--~-~l~~l~~L~~L~l~~n~-l~~~~--~-~~~l~~  266 (466)
T 1o6v_A          200 NLESLIATNNQ-ISDIT--P-LGILTNLDELSLNGNQ--LKDI--G-TLASLTNLTDLDLANNQ-ISNLA--P-LSGLTK  266 (466)
T ss_dssp             TCSEEECCSSC-CCCCG--G-GGGCTTCCEEECCSSC--CCCC--G-GGGGCTTCSEEECCSSC-CCCCG--G-GTTCTT
T ss_pred             CCCEEEecCCc-ccccc--c-ccccCCCCEEECCCCC--cccc--h-hhhcCCCCCEEECCCCc-cccch--h-hhcCCC
Confidence            99999999853 33221  1 4568999999999865  3321  1 23468999999999865 33321  1 457899


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccccc---ccccCCCCCcEEecC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWESM---KGRYDEEGLQSLNIS  314 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~---~~~~~~~~L~~L~l~  314 (374)
                      |+.|++++| .++...  . ...+++|+.|++++|. +++...  +.... .+......+..   ..+..+++|+.|+++
T Consensus       267 L~~L~l~~n-~l~~~~--~-~~~l~~L~~L~L~~n~-l~~~~~--~~~l~~L~~L~L~~n~l~~~~~~~~l~~L~~L~l~  339 (466)
T 1o6v_A          267 LTELKLGAN-QISNIS--P-LAGLTALTNLELNENQ-LEDISP--ISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFY  339 (466)
T ss_dssp             CSEEECCSS-CCCCCG--G-GTTCTTCSEEECCSSC-CSCCGG--GGGCTTCSEEECCSSCCSCCGGGGGCTTCCEEECC
T ss_pred             CCEEECCCC-ccCccc--c-ccCCCccCeEEcCCCc-ccCchh--hcCCCCCCEEECcCCcCCCchhhccCccCCEeECC
Confidence            999999996 444321  1 3458999999999985 443111  11110 00001111111   125567777777777


Q ss_pred             CCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          315 QCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       315 ~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      +| .+++         .+.+..+++|+.|++++|. +++.
T Consensus       340 ~n-~l~~---------~~~l~~l~~L~~L~l~~n~-l~~~  368 (466)
T 1o6v_A          340 NN-KVSD---------VSSLANLTNINWLSAGHNQ-ISDL  368 (466)
T ss_dssp             SS-CCCC---------CGGGTTCTTCCEEECCSSC-CCBC
T ss_pred             CC-ccCC---------chhhccCCCCCEEeCCCCc-cCcc
Confidence            74 4543         1234667888888888874 4443

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.14  E-value=5.8e-14  Score=124.35  Aligned_cols=228  Identities=18%  Similarity=0.115  Sum_probs=136.2

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHH--HHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNA--VEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  157 (374)
                      .+++|+++.+...  ......+..+++|+.|+++  .+.+....  ...+ ..+++|++|+++++. +..  +......+
T Consensus        29 ~l~~L~L~~n~l~--~i~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~~~-~~~~~L~~L~Ls~n~-i~~--l~~~~~~l  100 (306)
T 2z66_A           29 SATRLELESNKLQ--SLPHGVFDKLTQLTKLSLS--SNGLSFKGCCSQSD-FGTTSLKYLDLSFNG-VIT--MSSNFLGL  100 (306)
T ss_dssp             TCCEEECCSSCCC--CCCTTTTTTCTTCSEEECC--SSCCCEEEEEEHHH-HSCSCCCEEECCSCS-EEE--EEEEEETC
T ss_pred             CCCEEECCCCccC--ccCHhHhhccccCCEEECC--CCccCcccCccccc-ccccccCEEECCCCc-ccc--ChhhcCCC
Confidence            3777888766433  2222334678899999998  44554211  1122 237899999999873 321  11112347


Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|++|+++++ .+...........+++|++|+++++.  +... .......+++|++|+++++. +.+.........++
T Consensus       101 ~~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~l~  175 (306)
T 2z66_A          101 EQLEHLDFQHS-NLKQMSEFSVFLSLRNLIYLDISHTH--TRVA-FNGIFNGLSSLEVLKMAGNS-FQENFLPDIFTELR  175 (306)
T ss_dssp             TTCCEEECTTS-EEESSTTTTTTTTCTTCCEEECTTSC--CEEC-STTTTTTCTTCCEEECTTCE-EGGGEECSCCTTCT
T ss_pred             CCCCEEECCCC-cccccccchhhhhccCCCEEECCCCc--CCcc-chhhcccCcCCCEEECCCCc-cccccchhHHhhCc
Confidence            89999999874 33221111223457899999998854  2221 12223457899999998753 33211222334678


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +|+.|++++| .++......+ ..+++|+.|+++++. ++.....                  .+..+++|++|+++++ 
T Consensus       176 ~L~~L~Ls~n-~l~~~~~~~~-~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N-  233 (306)
T 2z66_A          176 NLTFLDLSQC-QLEQLSPTAF-NSLSSLQVLNMSHNN-FFSLDTF------------------PYKCLNSLQVLDYSLN-  233 (306)
T ss_dssp             TCCEEECTTS-CCCEECTTTT-TTCTTCCEEECTTSC-CSBCCSG------------------GGTTCTTCCEEECTTS-
T ss_pred             CCCEEECCCC-CcCCcCHHHh-cCCCCCCEEECCCCc-cCccChh------------------hccCcccCCEeECCCC-
Confidence            9999999985 4543211222 357899999998885 4321111                  1234689999999984 


Q ss_pred             CCCHHHHHHHHhhCCCccCCC-CCceEEecCCc
Q 017279          318 ALTPPAVQALCDTFPALHTCS-GRHSLVMSGCL  349 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~l~~~~-~L~~L~ls~C~  349 (374)
                      .++....       ..+..+| +|+.|++++++
T Consensus       234 ~l~~~~~-------~~~~~~~~~L~~L~L~~N~  259 (306)
T 2z66_A          234 HIMTSKK-------QELQHFPSSLAFLNLTQND  259 (306)
T ss_dssp             CCCBCSS-------SSCCCCCTTCCEEECTTCC
T ss_pred             CCcccCH-------HHHHhhhccCCEEEccCCC
Confidence            5653111       1345564 89999999986

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.13  E-value=6e-12  Score=111.62  Aligned_cols=209  Identities=21%  Similarity=0.190  Sum_probs=118.2

Q ss_pred             cCCCCcEEEeeCCCCCCChHHHHHH-HHhCCCCCEEecCCCCCCCHH--HHHHHHh-cCCCCcEEeecCCCCCCHHHHHH
Q 017279          103 KLTKLQTLVLRQDKPQLEDNAVEAI-ANSCHDLQDLDLSKSFKLSDR--SLYALAH-GCPNLTRLNISGCTSFSDHALAY  178 (374)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~~~~l-~~~~~~L~~L~l~~~~~~~~~--~~~~l~~-~~~~L~~L~L~~~~~~~~~~~~~  178 (374)
                      .+++|++|+++  .+.+.......+ ...+++|++|+++++ .++..  .+..+.. ..++|++|+++++ .+..... .
T Consensus        93 ~l~~L~~L~L~--~n~l~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~-~  167 (312)
T 1wwl_A           93 GISGLQELTLE--NLEVTGTAPPPLLEATGPDLNILNLRNV-SWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSC-E  167 (312)
T ss_dssp             TTSCCCEEEEE--EEBCBSCCCCCSSSCCSCCCSEEEEESC-BCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCT-T
T ss_pred             CcCCccEEEcc--CCcccchhHHHHHHhcCCCccEEEccCC-CCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchH-H
Confidence            46788888887  333332111111 134678888888876 33322  2222221 1278888888874 3332111 1


Q ss_pred             HHhcCCCCcEEEcCCCccCccH-HHHHHHH--hcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279          179 LCGFCRKLKILNLCGCVKAATD-YALQAIG--RNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD  253 (374)
Q Consensus       179 l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~--~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~  253 (374)
                      ....+++|++|+++++.  +.. ..+..-.  ..+++|++|+++++. ++.  .....+...+++|+.|+++++ .++..
T Consensus       168 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~  243 (312)
T 1wwl_A          168 QVRVFPALSTLDLSDNP--ELGERGLISALCPLKFPTLQVLALRNAG-METPSGVCSALAAARVQLQGLDLSHN-SLRDA  243 (312)
T ss_dssp             TCCCCSSCCEEECCSCT--TCHHHHHHHHSCTTSCTTCCEEECTTSC-CCCHHHHHHHHHHTTCCCSEEECTTS-CCCSS
T ss_pred             HhccCCCCCEEECCCCC--cCcchHHHHHHHhccCCCCCEEECCCCc-CcchHHHHHHHHhcCCCCCEEECCCC-cCCcc
Confidence            22357888888888754  232 2222222  567888888888754 442  222344556788888888884 44432


Q ss_pred             HHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC
Q 017279          254 SVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA  333 (374)
Q Consensus       254 ~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  333 (374)
                      ........+++|+.|+++++. ++.     +..              .+  .++|++|++++ +.++.         .|.
T Consensus       244 ~~~~~~~~l~~L~~L~Ls~N~-l~~-----ip~--------------~~--~~~L~~L~Ls~-N~l~~---------~p~  291 (312)
T 1wwl_A          244 AGAPSCDWPSQLNSLNLSFTG-LKQ-----VPK--------------GL--PAKLSVLDLSY-NRLDR---------NPS  291 (312)
T ss_dssp             CCCSCCCCCTTCCEEECTTSC-CSS-----CCS--------------SC--CSEEEEEECCS-SCCCS---------CCC
T ss_pred             cchhhhhhcCCCCEEECCCCc-cCh-----hhh--------------hc--cCCceEEECCC-CCCCC---------Chh
Confidence            100111235788888888875 441     100              11  16888899988 46653         244


Q ss_pred             ccCCCCCceEEecCCccccc
Q 017279          334 LHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       334 l~~~~~L~~L~ls~C~~l~~  353 (374)
                      +..+++|+.|++++++ +++
T Consensus       292 ~~~l~~L~~L~L~~N~-l~~  310 (312)
T 1wwl_A          292 PDELPQVGNLSLKGNP-FLD  310 (312)
T ss_dssp             TTTSCEEEEEECTTCT-TTC
T ss_pred             HhhCCCCCEEeccCCC-CCC
Confidence            5677888999988874 443

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.12  E-value=2.9e-13  Score=126.12  Aligned_cols=225  Identities=17%  Similarity=0.147  Sum_probs=130.6

Q ss_pred             CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      ++.|+++.+.....  ....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++.... .....+++|
T Consensus        66 l~~L~L~~n~i~~~--~~~~~~~l~~L~~L~Ls--~n~i~~i~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~L  138 (440)
T 3zyj_A           66 TRLLNLHENQIQII--KVNSFKHLRHLEILQLS--RNHIRTIEIGAF-NGLANLNTLELFDN-RLTTIPN-GAFVYLSKL  138 (440)
T ss_dssp             CSEEECCSCCCCEE--CTTTTSSCSSCCEEECC--SSCCCEECGGGG-TTCSSCCEEECCSS-CCSSCCT-TTSCSCSSC
T ss_pred             CcEEEccCCcCCee--CHHHhhCCCCCCEEECC--CCcCCccChhhc-cCCccCCEEECCCC-cCCeeCH-hHhhccccC
Confidence            66777776543321  12334577888888888  444443222222 34788888888886 3332111 112346888


Q ss_pred             cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR  240 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  240 (374)
                      ++|+++++ .+.... ......+++|++|+++++.. +.. .....+..+++|+.|+++++. ++..  .. ...+++|+
T Consensus       139 ~~L~L~~N-~i~~~~-~~~~~~l~~L~~L~l~~~~~-l~~-i~~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L~  210 (440)
T 3zyj_A          139 KELWLRNN-PIESIP-SYAFNRIPSLRRLDLGELKR-LSY-ISEGAFEGLSNLRYLNLAMCN-LREI--PN-LTPLIKLD  210 (440)
T ss_dssp             CEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTT-CCE-ECTTTTTTCSSCCEEECTTSC-CSSC--CC-CTTCSSCC
T ss_pred             ceeeCCCC-cccccC-HHHhhhCcccCEeCCCCCCC-cce-eCcchhhcccccCeecCCCCc-Cccc--cc-cCCCcccC
Confidence            88888874 333211 11234578888888887442 111 011123457888888888754 3321  11 23567888


Q ss_pred             eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCC
Q 017279          241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALT  320 (374)
Q Consensus       241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  320 (374)
                      .|++++| .++..... ....+++|+.|+++++. ++...                  ...+..+++|++|++++ +.++
T Consensus       211 ~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~------------------~~~~~~l~~L~~L~L~~-N~l~  268 (440)
T 3zyj_A          211 ELDLSGN-HLSAIRPG-SFQGLMHLQKLWMIQSQ-IQVIE------------------RNAFDNLQSLVEINLAH-NNLT  268 (440)
T ss_dssp             EEECTTS-CCCEECTT-TTTTCTTCCEEECTTCC-CCEEC------------------TTSSTTCTTCCEEECTT-SCCC
T ss_pred             EEECCCC-ccCccChh-hhccCccCCEEECCCCc-eeEEC------------------hhhhcCCCCCCEEECCC-CCCC
Confidence            8888885 45432112 22357888888888774 43211                  11234568999999998 4565


Q ss_pred             HHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          321 PPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       321 ~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ....       ..+..+++|+.|++++++
T Consensus       269 ~~~~-------~~~~~l~~L~~L~L~~Np  290 (440)
T 3zyj_A          269 LLPH-------DLFTPLHHLERIHLHHNP  290 (440)
T ss_dssp             CCCT-------TTTSSCTTCCEEECCSSC
T ss_pred             ccCh-------hHhccccCCCEEEcCCCC
Confidence            2111       123567899999999886

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.12  E-value=3.1e-13  Score=126.32  Aligned_cols=226  Identities=18%  Similarity=0.126  Sum_probs=126.6

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++++....  .....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++... ......+++
T Consensus        76 ~l~~L~L~~n~i~~--~~~~~~~~l~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~  148 (452)
T 3zyi_A           76 NTRYLNLMENNIQM--IQADTFRHLHHLEVLQLG--RNSIRQIEVGAF-NGLASLNTLELFDN-WLTVIP-SGAFEYLSK  148 (452)
T ss_dssp             TCSEEECCSSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECTTTT-TTCTTCCEEECCSS-CCSBCC-TTTSSSCTT
T ss_pred             CccEEECcCCcCce--ECHHHcCCCCCCCEEECC--CCccCCcChhhc-cCcccCCEEECCCC-cCCccC-hhhhcccCC
Confidence            36777777654321  112334567788888887  444443222222 34678888888876 333211 111234678


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++ .+.... ......+++|++|+++++.. +.... ...+..+++|+.|+++++. +++.  .. ...+++|
T Consensus       149 L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~~~~-l~~i~-~~~~~~l~~L~~L~L~~n~-l~~~--~~-~~~l~~L  220 (452)
T 3zyi_A          149 LRELWLRNN-PIESIP-SYAFNRVPSLMRLDLGELKK-LEYIS-EGAFEGLFNLKYLNLGMCN-IKDM--PN-LTPLVGL  220 (452)
T ss_dssp             CCEEECCSC-CCCEEC-TTTTTTCTTCCEEECCCCTT-CCEEC-TTTTTTCTTCCEEECTTSC-CSSC--CC-CTTCTTC
T ss_pred             CCEEECCCC-CcceeC-HhHHhcCCcccEEeCCCCCC-ccccC-hhhccCCCCCCEEECCCCc-cccc--cc-ccccccc
Confidence            888888774 333211 11234577888888876432 11110 1123457788888887754 3321  11 2356788


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL  319 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  319 (374)
                      +.|++++| .++..... ....+++|+.|+++++. ++....                  ..+..+++|+.|+++++ .+
T Consensus       221 ~~L~Ls~N-~l~~~~~~-~~~~l~~L~~L~L~~n~-l~~~~~------------------~~~~~l~~L~~L~L~~N-~l  278 (452)
T 3zyi_A          221 EELEMSGN-HFPEIRPG-SFHGLSSLKKLWVMNSQ-VSLIER------------------NAFDGLASLVELNLAHN-NL  278 (452)
T ss_dssp             CEEECTTS-CCSEECGG-GGTTCTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECCSS-CC
T ss_pred             cEEECcCC-cCcccCcc-cccCccCCCEEEeCCCc-CceECH------------------HHhcCCCCCCEEECCCC-cC
Confidence            88888884 44322112 22347788888888774 432111                  12345689999999984 56


Q ss_pred             CHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          320 TPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       320 ~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      +....       ..+..+++|+.|++++++
T Consensus       279 ~~~~~-------~~~~~l~~L~~L~L~~Np  301 (452)
T 3zyi_A          279 SSLPH-------DLFTPLRYLVELHLHHNP  301 (452)
T ss_dssp             SCCCT-------TSSTTCTTCCEEECCSSC
T ss_pred             CccCh-------HHhccccCCCEEEccCCC
Confidence            52110       123568899999999886

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=99.12  E-value=1.6e-14  Score=128.38  Aligned_cols=234  Identities=17%  Similarity=0.095  Sum_probs=132.0

Q ss_pred             HHHhhh------ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC
Q 017279           73 WRDAIC------LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS  146 (374)
Q Consensus        73 w~~~~~------~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~  146 (374)
                      |..+.|      ..++.|+++++.......+...+..+++|+.|+++ .++.+.......+ ..+++|++|+++++ .++
T Consensus        38 w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~-~~n~l~~~~p~~l-~~l~~L~~L~Ls~n-~l~  114 (313)
T 1ogq_A           38 WLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAI-AKLTQLHYLYITHT-NVS  114 (313)
T ss_dssp             STTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE-EETTEESCCCGGG-GGCTTCSEEEEEEE-CCE
T ss_pred             CcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCCCCeeeCC-CCCcccccCChhH-hcCCCCCEEECcCC-eeC
Confidence            776655      35788888876543210122345678899999998 3133322222222 34789999999876 333


Q ss_pred             HHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC-CCCEEeccCCCCCC
Q 017279          147 DRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN-QLQSLNLGWCEDVG  225 (374)
Q Consensus       147 ~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~-~L~~L~l~~~~~~~  225 (374)
                      ......+ ..+++|++|+++++ .+... ++.....+++|++|+++++.  +.......+ ..++ +|+.|+++++. +.
T Consensus       115 ~~~p~~~-~~l~~L~~L~Ls~N-~l~~~-~p~~~~~l~~L~~L~L~~N~--l~~~~p~~l-~~l~~~L~~L~L~~N~-l~  187 (313)
T 1ogq_A          115 GAIPDFL-SQIKTLVTLDFSYN-ALSGT-LPPSISSLPNLVGITFDGNR--ISGAIPDSY-GSFSKLFTSMTISRNR-LT  187 (313)
T ss_dssp             EECCGGG-GGCTTCCEEECCSS-EEESC-CCGGGGGCTTCCEEECCSSC--CEEECCGGG-GCCCTTCCEEECCSSE-EE
T ss_pred             CcCCHHH-hCCCCCCEEeCCCC-ccCCc-CChHHhcCCCCCeEECcCCc--ccCcCCHHH-hhhhhcCcEEECcCCe-ee
Confidence            2111222 34789999999874 32211 11223458899999998854  332211222 3455 88999998753 32


Q ss_pred             HHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC
Q 017279          226 DVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE  305 (374)
Q Consensus       226 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~  305 (374)
                      ..... ....++ |+.|+++++ .++... ......+++|+.|+++++. ++..                   ...+..+
T Consensus       188 ~~~~~-~~~~l~-L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~-l~~~-------------------~~~~~~l  243 (313)
T 1ogq_A          188 GKIPP-TFANLN-LAFVDLSRN-MLEGDA-SVLFGSDKNTQKIHLAKNS-LAFD-------------------LGKVGLS  243 (313)
T ss_dssp             EECCG-GGGGCC-CSEEECCSS-EEEECC-GGGCCTTSCCSEEECCSSE-ECCB-------------------GGGCCCC
T ss_pred             ccCCh-HHhCCc-ccEEECcCC-cccCcC-CHHHhcCCCCCEEECCCCc-eeee-------------------cCccccc
Confidence            11111 122334 888888885 343211 1222347888888888875 3310                   0012245


Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~  349 (374)
                      ++|++|+++++ .++.        ..| .+..+++|+.|++++|.
T Consensus       244 ~~L~~L~Ls~N-~l~~--------~~p~~l~~l~~L~~L~Ls~N~  279 (313)
T 1ogq_A          244 KNLNGLDLRNN-RIYG--------TLPQGLTQLKFLHSLNVSFNN  279 (313)
T ss_dssp             TTCCEEECCSS-CCEE--------CCCGGGGGCTTCCEEECCSSE
T ss_pred             CCCCEEECcCC-cccC--------cCChHHhcCcCCCEEECcCCc
Confidence            78888888873 4442        122 24567778888888774

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.11  E-value=2.4e-12  Score=128.26  Aligned_cols=37  Identities=27%  Similarity=0.373  Sum_probs=23.1

Q ss_pred             CCCCCcEEecCCCCCCCHHHHHHHHhhCC-Cc-cCCCCCceEEecCCc
Q 017279          304 DEEGLQSLNISQCTALTPPAVQALCDTFP-AL-HTCSGRHSLVMSGCL  349 (374)
Q Consensus       304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l-~~~~~L~~L~ls~C~  349 (374)
                      .+++|++|+++++ .++.        ..| .+ ..|++|+.|++++|.
T Consensus       267 ~l~~L~~L~L~~n-~l~~--------~ip~~~~~~~~~L~~L~Ls~n~  305 (768)
T 3rgz_A          267 PLKSLQYLSLAEN-KFTG--------EIPDFLSGACDTLTGLDLSGNH  305 (768)
T ss_dssp             CCTTCCEEECCSS-EEEE--------SCCCCSCTTCTTCSEEECCSSE
T ss_pred             ccCCCCEEECcCC-ccCC--------ccCHHHHhhcCcCCEEECcCCc
Confidence            4577888888774 3321        122 22 235888999988885

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.10  E-value=3e-13  Score=131.27  Aligned_cols=14  Identities=7%  Similarity=-0.085  Sum_probs=7.3

Q ss_pred             cCCCCCceEEecCC
Q 017279          335 HTCSGRHSLVMSGC  348 (374)
Q Consensus       335 ~~~~~L~~L~ls~C  348 (374)
                      ..+++|+.|++++|
T Consensus       497 ~~l~~L~~L~Ls~N  510 (606)
T 3t6q_A          497 TSLKMMNHVDLSHN  510 (606)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             ccccCCCEEECCCC
Confidence            34455555555555

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=99.08  E-value=1.2e-12  Score=130.28  Aligned_cols=177  Identities=21%  Similarity=0.234  Sum_probs=78.4

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH--HHhcC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA--LAHGC  157 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~  157 (374)
                      .+++|+++++.....-........+++|++|+++  .+.+.......+...+++|++|+++++ .++......  ....+
T Consensus       101 ~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A          101 SLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVS--SNTLDFPGKVSGGLKLNSLEVLDLSAN-SISGANVVGWVLSDGC  177 (768)
T ss_dssp             TCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECC--SSEEECCSSCCSCCCCTTCSEEECCSS-CCEEETHHHHHHTTCC
T ss_pred             CCCEEECCCCcCCCcCCChHHHhCCCCCCEEECc--CCccCCcCCHHHhccCCCCCEEECCCC-ccCCcCChhhhhhccC
Confidence            4667777665443211111134466677777776  222211111111123566667776665 232221111  12345


Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|++|+++++. +...  .. ...+++|++|+++++..  ... ... ...+++|++|+++++. +++.. ......++
T Consensus       178 ~~L~~L~Ls~n~-l~~~--~~-~~~l~~L~~L~Ls~n~l--~~~-~~~-l~~l~~L~~L~Ls~n~-l~~~~-~~~l~~l~  247 (768)
T 3rgz_A          178 GELKHLAISGNK-ISGD--VD-VSRCVNLEFLDVSSNNF--STG-IPF-LGDCSALQHLDISGNK-LSGDF-SRAISTCT  247 (768)
T ss_dssp             TTCCEEECCSSE-EESC--CB-CTTCTTCCEEECCSSCC--CSC-CCB-CTTCCSCCEEECCSSC-CCSCH-HHHTTTCS
T ss_pred             CCCCEEECCCCc-cccc--CC-cccCCcCCEEECcCCcC--CCC-Ccc-cccCCCCCEEECcCCc-CCCcc-cHHHhcCC
Confidence            666666666532 1110  00 03456666666665432  110 111 3345666666666543 33221 22233566


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYC  273 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~  273 (374)
                      +|++|++++|. ++.. +...  .+++|++|++++|
T Consensus       248 ~L~~L~Ls~n~-l~~~-~~~~--~l~~L~~L~L~~n  279 (768)
T 3rgz_A          248 ELKLLNISSNQ-FVGP-IPPL--PLKSLQYLSLAEN  279 (768)
T ss_dssp             SCCEEECCSSC-CEES-CCCC--CCTTCCEEECCSS
T ss_pred             CCCEEECCCCc-ccCc-cCcc--ccCCCCEEECcCC
Confidence            66666666643 2110 0000  3555666666555

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.08  E-value=7.3e-12  Score=112.01  Aligned_cols=108  Identities=16%  Similarity=0.143  Sum_probs=44.0

Q ss_pred             hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (374)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~  181 (374)
                      ..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++.  +..  ...++|++|+++++ .+.... .....
T Consensus        73 ~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~--l~~--~~~~~L~~L~l~~n-~l~~~~-~~~~~  142 (330)
T 1xku_A           73 KNLKNLHTLILI--NNKISKISPGAF-APLVKLERLYLSKN-QLKE--LPE--KMPKTLQELRVHEN-EITKVR-KSVFN  142 (330)
T ss_dssp             TTCTTCCEEECC--SSCCCCBCTTTT-TTCTTCCEEECCSS-CCSB--CCS--SCCTTCCEEECCSS-CCCBBC-HHHHT
T ss_pred             ccCCCCCEEECC--CCcCCeeCHHHh-cCCCCCCEEECCCC-cCCc--cCh--hhcccccEEECCCC-cccccC-HhHhc
Confidence            345566666665  223322111111 23556666666554 2221  000  11245666666553 222111 11223


Q ss_pred             cCCCCcEEEcCCCccCccHH-HHHHHHhcCCCCCEEeccCC
Q 017279          182 FCRKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWC  221 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~  221 (374)
                      .+++|++|+++++.  +... ........+++|+.|+++++
T Consensus       143 ~l~~L~~L~l~~n~--l~~~~~~~~~~~~l~~L~~L~l~~n  181 (330)
T 1xku_A          143 GLNQMIVVELGTNP--LKSSGIENGAFQGMKKLSYIRIADT  181 (330)
T ss_dssp             TCTTCCEEECCSSC--CCGGGBCTTGGGGCTTCCEEECCSS
T ss_pred             CCccccEEECCCCc--CCccCcChhhccCCCCcCEEECCCC
Confidence            45566666665533  2111 11112234555666665543

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.08  E-value=5.7e-13  Score=116.64  Aligned_cols=204  Identities=19%  Similarity=0.132  Sum_probs=119.6

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++.+....  .....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++..++...... ...+++
T Consensus        33 ~l~~L~l~~n~i~~--~~~~~~~~~~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n~~l~~~~~~~-~~~l~~  106 (285)
T 1ozn_A           33 ASQRIFLHGNRISH--VPAASFRACRNLTILWLH--SNVLARIDAAAF-TGLALLEQLDLSDNAQLRSVDPAT-FHGLGR  106 (285)
T ss_dssp             TCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECTTTT-TTCTTCCEEECCSCTTCCCCCTTT-TTTCTT
T ss_pred             CceEEEeeCCcCCc--cCHHHcccCCCCCEEECC--CCccceeCHhhc-CCccCCCEEeCCCCCCccccCHHH-hcCCcC
Confidence            36777777654332  112234577889999998  444443222222 347889999998864233321112 234788


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++ .+.... ......+++|++|+++++.  +.... ......+++|+.|+++++. ++... ......+++|
T Consensus       107 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L  179 (285)
T 1ozn_A          107 LHTLHLDRC-GLQELG-PGLFRGLAALQYLYLQDNA--LQALP-DDTFRDLGNLTHLFLHGNR-ISSVP-ERAFRGLHSL  179 (285)
T ss_dssp             CCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTC
T ss_pred             CCEEECCCC-cCCEEC-HhHhhCCcCCCEEECCCCc--ccccC-HhHhccCCCccEEECCCCc-ccccC-HHHhcCcccc
Confidence            999999874 333211 1223457889999998754  32111 1123457889999998753 43311 1123457889


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +.|+++++ .++......+ ..+++|+.|+++++. ++......+.                  .+++|+.|++++++
T Consensus       180 ~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~l~~n~-l~~~~~~~~~------------------~l~~L~~L~l~~N~  236 (285)
T 1ozn_A          180 DRLLLHQN-RVAHVHPHAF-RDLGRLMTLYLFANN-LSALPTEALA------------------PLRALQYLRLNDNP  236 (285)
T ss_dssp             CEEECCSS-CCCEECTTTT-TTCTTCCEEECCSSC-CSCCCHHHHT------------------TCTTCCEEECCSSC
T ss_pred             CEEECCCC-cccccCHhHc-cCcccccEeeCCCCc-CCcCCHHHcc------------------cCcccCEEeccCCC
Confidence            99999985 4543222222 347889999998875 5543223333                  34889999998854

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.08  E-value=6.5e-12  Score=115.07  Aligned_cols=50  Identities=12%  Similarity=0.052  Sum_probs=28.3

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCcccccc
Q 017279          305 EEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHRTA  366 (374)
Q Consensus       305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~~~  366 (374)
                      +++|+.|+++++ .++.         ++ +..+++|+.|++++++ ++.......++.++..
T Consensus       317 l~~L~~L~L~~N-~i~~---------~~-~~~~~~L~~L~l~~N~-~~~~~~~~~~~~~~~~  366 (390)
T 3o6n_A          317 FDRLENLYLDHN-SIVT---------LK-LSTHHTLKNLTLSHND-WDCNSLRALFRNVARP  366 (390)
T ss_dssp             HTTCSEEECCSS-CCCC---------CC-CCTTCCCSEEECCSSC-EEHHHHHHHTTTCCTT
T ss_pred             cCcCCEEECCCC-ccce---------eC-chhhccCCEEEcCCCC-ccchhHHHHHHHHHhh
Confidence            466777777663 3432         11 3567777888888775 5544444444444443

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.07  E-value=5.1e-11  Score=105.52  Aligned_cols=204  Identities=18%  Similarity=0.142  Sum_probs=104.0

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHH-HhCCCCCEEecCCCCCCCHH----HHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIA-NSCHDLQDLDLSKSFKLSDR----SLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~-~~~~~L~~L~l~~~~~~~~~----~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~  178 (374)
                      .++|+.|+++  .+.+.......+. ..+++|++|+++++. ++..    ....+. .+++|++|+++++ .+.... ..
T Consensus        90 ~~~L~~L~l~--~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~-i~~~~~~~~~~~~~-~~~~L~~L~Ls~n-~l~~~~-~~  163 (310)
T 4glp_A           90 YSRLKELTLE--DLKITGTMPPLPLEATGLALSSLRLRNVS-WATGRSWLAELQQW-LKPGLKVLSIAQA-HSPAFS-CE  163 (310)
T ss_dssp             HSCCCEEEEE--SCCCBSCCCCCSSSCCCBCCSSCEEESCC-CSSTTSSHHHHHTT-BCSCCCEEEEECC-SSCCCC-TT
T ss_pred             cCceeEEEee--CCEeccchhhhhhhccCCCCCEEEeeccc-ccchhhhhHHHHhh-hccCCCEEEeeCC-Ccchhh-HH
Confidence            3557777777  3333221111111 336677777777753 3221    111222 4677777777764 332111 11


Q ss_pred             HHhcCCCCcEEEcCCCccCccH-HHHHH--HHhcCCCCCEEeccCCCCCCH--HHHHHHHhcCCCCCeeecCCCCCCCHH
Q 017279          179 LCGFCRKLKILNLCGCVKAATD-YALQA--IGRNCNQLQSLNLGWCEDVGD--VGVMNLAYGCPDLRSLDLCGCVCITDD  253 (374)
Q Consensus       179 l~~~~~~L~~L~L~~~~~~~~~-~~~~~--l~~~~~~L~~L~l~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~l~~~  253 (374)
                      ....+++|++|+++++.  +.. ..+..  ....+++|++|+++++. ++.  .....+...+++|++|++++| .++..
T Consensus       164 ~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~l~~~~~~l~~~l~~L~~L~Ls~N-~l~~~  239 (310)
T 4glp_A          164 QVRAFPALTSLDLSDNP--GLGERGLMAALCPHKFPAIQNLALRNTG-METPTGVCAALAAAGVQPHSLDLSHN-SLRAT  239 (310)
T ss_dssp             SCCCCTTCCEEECCSCT--TCHHHHHHTTSCTTSSCCCCSCBCCSSC-CCCHHHHHHHHHHHTCCCSSEECTTS-CCCCC
T ss_pred             HhccCCCCCEEECCCCC--CccchhhhHHHhhhcCCCCCEEECCCCC-CCchHHHHHHHHhcCCCCCEEECCCC-CCCcc
Confidence            22346777777777744  222 22211  12356777777777654 432  222223455677777777774 34322


Q ss_pred             HHHHHHh--cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhC
Q 017279          254 SVIALAN--GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTF  331 (374)
Q Consensus       254 ~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  331 (374)
                      ....+..  ..++|++|+++++. ++.     +..              .+  +++|++|++++ +.++.         +
T Consensus       240 ~p~~~~~~~~~~~L~~L~Ls~N~-l~~-----lp~--------------~~--~~~L~~L~Ls~-N~l~~---------~  287 (310)
T 4glp_A          240 VNPSAPRCMWSSALNSLNLSFAG-LEQ-----VPK--------------GL--PAKLRVLDLSS-NRLNR---------A  287 (310)
T ss_dssp             CCSCCSSCCCCTTCCCEECCSSC-CCS-----CCS--------------CC--CSCCSCEECCS-CCCCS---------C
T ss_pred             chhhHHhccCcCcCCEEECCCCC-CCc-----hhh--------------hh--cCCCCEEECCC-CcCCC---------C
Confidence            1111111  12577777777764 331     000              01  26788888877 45552         2


Q ss_pred             CCccCCCCCceEEecCCc
Q 017279          332 PALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       332 ~~l~~~~~L~~L~ls~C~  349 (374)
                      |....+++|+.|++++++
T Consensus       288 ~~~~~l~~L~~L~L~~N~  305 (310)
T 4glp_A          288 PQPDELPEVDNLTLDGNP  305 (310)
T ss_dssp             CCTTSCCCCSCEECSSTT
T ss_pred             chhhhCCCccEEECcCCC
Confidence            334567788888888774

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=99.06  E-value=1.2e-12  Score=126.98  Aligned_cols=108  Identities=20%  Similarity=0.137  Sum_probs=48.2

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++++....   ++.....+++|+.|+++  .+.+.......+ ..+++|++|+++++..... ........++
T Consensus       278 ~~L~~L~l~~n~l~~---lp~~l~~l~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n~~~~~-~~~~~~~~l~  350 (606)
T 3t6q_A          278 SGLQELDLTATHLSE---LPSGLVGLSTLKKLVLS--ANKFENLCQISA-SNFPSLTHLSIKGNTKRLE-LGTGCLENLE  350 (606)
T ss_dssp             TTCSEEECTTSCCSC---CCSSCCSCTTCCEEECT--TCCCSBGGGGCG-GGCTTCSEEECCSCSSCCB-CCSSTTTTCT
T ss_pred             cCCCEEeccCCccCC---CChhhcccccCCEEECc--cCCcCcCchhhh-hccCcCCEEECCCCCcccc-cchhhhhccC
Confidence            346777776654321   11223456677777776  334433221122 2356667776666521111 0001112356


Q ss_pred             CCcEEeecCCCCCCHHH-HHHHHhcCCCCcEEEcCCC
Q 017279          159 NLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGC  194 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~  194 (374)
                      +|++|+++++ .+.... .......+++|++|+++++
T Consensus       351 ~L~~L~l~~n-~l~~~~~~~~~~~~l~~L~~L~l~~n  386 (606)
T 3t6q_A          351 NLRELDLSHD-DIETSDCCNLQLRNLSHLQSLNLSYN  386 (606)
T ss_dssp             TCCEEECCSS-CCCEEEESTTTTTTCTTCCEEECCSC
T ss_pred             cCCEEECCCC-ccccccCcchhcccCCCCCEEECCCC
Confidence            6666666653 222110 0111223555666665553

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.05  E-value=3.7e-13  Score=119.12  Aligned_cols=210  Identities=15%  Similarity=0.110  Sum_probs=131.9

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH--HHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS--LYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~--~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~  181 (374)
                      .++++.|+++  .+.+.... ..+...+++|++|+++++ .++...  ...+. .+++|++|+++++ .+..  ++....
T Consensus        27 ~~~l~~L~L~--~n~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~~~~~~~~~~-~~~~L~~L~Ls~n-~i~~--l~~~~~   98 (306)
T 2z66_A           27 PSSATRLELE--SNKLQSLP-HGVFDKLTQLTKLSLSSN-GLSFKGCCSQSDF-GTTSLKYLDLSFN-GVIT--MSSNFL   98 (306)
T ss_dssp             CTTCCEEECC--SSCCCCCC-TTTTTTCTTCSEEECCSS-CCCEEEEEEHHHH-SCSCCCEEECCSC-SEEE--EEEEEE
T ss_pred             CCCCCEEECC--CCccCccC-HhHhhccccCCEEECCCC-ccCcccCcccccc-cccccCEEECCCC-cccc--ChhhcC
Confidence            3689999999  44444211 122245889999999987 443211  11222 3799999999985 3331  111234


Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      .+++|++|+++++.  +...........+++|++|+++++. +... .......+++|++|+++++ .++...+......
T Consensus        99 ~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~~  173 (306)
T 2z66_A           99 GLEQLEHLDFQHSN--LKQMSEFSVFLSLRNLIYLDISHTH-TRVA-FNGIFNGLSSLEVLKMAGN-SFQENFLPDIFTE  173 (306)
T ss_dssp             TCTTCCEEECTTSE--EESSTTTTTTTTCTTCCEEECTTSC-CEEC-STTTTTTCTTCCEEECTTC-EEGGGEECSCCTT
T ss_pred             CCCCCCEEECCCCc--ccccccchhhhhccCCCEEECCCCc-CCcc-chhhcccCcCCCEEECCCC-ccccccchhHHhh
Confidence            58999999999854  3322211234568999999998864 3221 1222346799999999995 4433222223345


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH  341 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~  341 (374)
                      +++|+.|+++++. ++....                  ..+..+++|++|+++++ .++.....       .+..+++|+
T Consensus       174 l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~L~~N-~l~~~~~~-------~~~~l~~L~  226 (306)
T 2z66_A          174 LRNLTFLDLSQCQ-LEQLSP------------------TAFNSLSSLQVLNMSHN-NFFSLDTF-------PYKCLNSLQ  226 (306)
T ss_dssp             CTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECTTS-CCSBCCSG-------GGTTCTTCC
T ss_pred             CcCCCEEECCCCC-cCCcCH------------------HHhcCCCCCCEEECCCC-ccCccChh-------hccCcccCC
Confidence            8999999999985 543111                  12335689999999994 55531110       246789999


Q ss_pred             eEEecCCcccccc
Q 017279          342 SLVMSGCLNLTSV  354 (374)
Q Consensus       342 ~L~ls~C~~l~~~  354 (374)
                      .|++++|. ++..
T Consensus       227 ~L~L~~N~-l~~~  238 (306)
T 2z66_A          227 VLDYSLNH-IMTS  238 (306)
T ss_dssp             EEECTTSC-CCBC
T ss_pred             EeECCCCC-Cccc
Confidence            99999995 5543

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.05  E-value=1.3e-12  Score=122.90  Aligned_cols=40  Identities=20%  Similarity=0.197  Sum_probs=24.6

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      +..+++|+.|+++++ .++....       ..+..+++|+.|++++++
T Consensus       292 ~~~l~~L~~L~L~~N-~l~~~~~-------~~~~~l~~L~~L~l~~N~  331 (477)
T 2id5_A          292 FRGLNYLRVLNVSGN-QLTTLEE-------SVFHSVGNLETLILDSNP  331 (477)
T ss_dssp             BTTCTTCCEEECCSS-CCSCCCG-------GGBSCGGGCCEEECCSSC
T ss_pred             hcCcccCCEEECCCC-cCceeCH-------hHcCCCcccCEEEccCCC
Confidence            556677777777773 4542110       013567788888888775

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=99.05  E-value=9.1e-09  Score=83.58  Aligned_cols=133  Identities=17%  Similarity=0.112  Sum_probs=80.6

Q ss_pred             HHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHHh---cCCCCceEecCCCC
Q 017279          201 YALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYCR  274 (374)
Q Consensus       201 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~  274 (374)
                      +.+..+...+++|++|+++++..+++.+...+..   ..++|++|++++| .+++++...+.+   ..+.|++|++++|.
T Consensus        26 ~~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n-~i~~~g~~~l~~~L~~n~~L~~L~L~~N~  104 (185)
T 1io0_A           26 ETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESNF  104 (185)
T ss_dssp             HHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCC-CCChHHHHHHHHHHHhCCCcCEEECcCCc
Confidence            3444455566677777776652466665554433   3566777777773 566666544443   24667777777774


Q ss_pred             CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEec--CCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279          275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI--SQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT  352 (374)
Q Consensus       275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l--~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~  352 (374)
                       +++.++..++...              ...++|++|++  ++ +.+++.+...++..+   ..+++|+.|++++|. +.
T Consensus       105 -i~~~g~~~l~~~L--------------~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L---~~n~~L~~L~L~~n~-i~  164 (185)
T 1io0_A          105 -ISGSGILALVEAL--------------QSNTSLIELRIDNQS-QPLGNNVEMEIANML---EKNTTLLKFGYHFTQ-QG  164 (185)
T ss_dssp             -CCHHHHHHHHHGG--------------GGCSSCCEEECCCCS-SCCCHHHHHHHHHHH---HHCSSCCEEECCCSS-HH
T ss_pred             -CCHHHHHHHHHHH--------------HhCCCceEEEecCCC-CCCCHHHHHHHHHHH---HhCCCcCEEeccCCC-CC
Confidence             7777777666542              12356777777  44 567777766665432   445677777777774 54


Q ss_pred             cc
Q 017279          353 SV  354 (374)
Q Consensus       353 ~~  354 (374)
                      ..
T Consensus       165 ~~  166 (185)
T 1io0_A          165 PR  166 (185)
T ss_dssp             HH
T ss_pred             hH
Confidence            44

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.04  E-value=9.1e-12  Score=110.47  Aligned_cols=207  Identities=19%  Similarity=0.112  Sum_probs=131.6

Q ss_pred             hccCceeecccccccchHHHHHH-hhcCCCCcEEEeeCCCCCCChH--HHHHHHHh-CCCCCEEecCCCCCCCHHHHHHH
Q 017279           78 CLGLTHLSLSWCKNNMNNLVLSL-APKLTKLQTLVLRQDKPQLEDN--AVEAIANS-CHDLQDLDLSKSFKLSDRSLYAL  153 (374)
Q Consensus        78 ~~~l~~L~l~~~~~~~~~~~~~~-~~~~~~L~~L~l~~~~~~~~~~--~~~~l~~~-~~~L~~L~l~~~~~~~~~~~~~l  153 (374)
                      ...+++|+++++...... ...+ ...+++|+.|+++  .+.++..  .+..+... .++|++|+++++ .++......+
T Consensus        94 l~~L~~L~L~~n~l~~~~-~~~~~~~~l~~L~~L~Ls--~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N-~l~~~~~~~~  169 (312)
T 1wwl_A           94 ISGLQELTLENLEVTGTA-PPPLLEATGPDLNILNLR--NVSWATRDAWLAELQQWLKPGLKVLSIAQA-HSLNFSCEQV  169 (312)
T ss_dssp             TSCCCEEEEEEEBCBSCC-CCCSSSCCSCCCSEEEEE--SCBCSSSSSHHHHHHTTCCTTCCEEEEESC-SCCCCCTTTC
T ss_pred             cCCccEEEccCCcccchh-HHHHHHhcCCCccEEEcc--CCCCcchhHHHHHHHHhhcCCCcEEEeeCC-CCccchHHHh
Confidence            456999999987654211 1111 2678999999999  4445443  33333221 389999999997 3333221222


Q ss_pred             HhcCCCCcEEeecCCCCCCH-HHHHHHH--hcCCCCcEEEcCCCccCccH--HHHHHHHhcCCCCCEEeccCCCCCCHHH
Q 017279          154 AHGCPNLTRLNISGCTSFSD-HALAYLC--GFCRKLKILNLCGCVKAATD--YALQAIGRNCNQLQSLNLGWCEDVGDVG  228 (374)
Q Consensus       154 ~~~~~~L~~L~L~~~~~~~~-~~~~~l~--~~~~~L~~L~L~~~~~~~~~--~~~~~l~~~~~~L~~L~l~~~~~~~~~~  228 (374)
                       ..+++|++|+++++ .+.. .++....  ..+++|++|+++++.  +..  .....+...+++|+.|+++++. +++..
T Consensus       170 -~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~  244 (312)
T 1wwl_A          170 -RVFPALSTLDLSDN-PELGERGLISALCPLKFPTLQVLALRNAG--METPSGVCSALAAARVQLQGLDLSHNS-LRDAA  244 (312)
T ss_dssp             -CCCSSCCEEECCSC-TTCHHHHHHHHSCTTSCTTCCEEECTTSC--CCCHHHHHHHHHHTTCCCSEEECTTSC-CCSSC
T ss_pred             -ccCCCCCEEECCCC-CcCcchHHHHHHHhccCCCCCEEECCCCc--CcchHHHHHHHHhcCCCCCEEECCCCc-CCccc
Confidence             34799999999985 4443 3333332  678999999999965  442  3344566678999999999864 44321


Q ss_pred             HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCC
Q 017279          229 VMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGL  308 (374)
Q Consensus       229 ~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L  308 (374)
                      .......+++|+.|++++| .++  .+..-  ..++|+.|+++++. ++..  ..                  +..+++|
T Consensus       245 ~~~~~~~l~~L~~L~Ls~N-~l~--~ip~~--~~~~L~~L~Ls~N~-l~~~--p~------------------~~~l~~L  298 (312)
T 1wwl_A          245 GAPSCDWPSQLNSLNLSFT-GLK--QVPKG--LPAKLSVLDLSYNR-LDRN--PS------------------PDELPQV  298 (312)
T ss_dssp             CCSCCCCCTTCCEEECTTS-CCS--SCCSS--CCSEEEEEECCSSC-CCSC--CC------------------TTTSCEE
T ss_pred             chhhhhhcCCCCEEECCCC-ccC--hhhhh--ccCCceEEECCCCC-CCCC--hh------------------HhhCCCC
Confidence            1112234689999999995 455  11111  12689999999985 5532  11                  2246899


Q ss_pred             cEEecCCCCCCC
Q 017279          309 QSLNISQCTALT  320 (374)
Q Consensus       309 ~~L~l~~~~~l~  320 (374)
                      ++|++++ +.++
T Consensus       299 ~~L~L~~-N~l~  309 (312)
T 1wwl_A          299 GNLSLKG-NPFL  309 (312)
T ss_dssp             EEEECTT-CTTT
T ss_pred             CEEeccC-CCCC
Confidence            9999998 4554

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.04  E-value=7.5e-12  Score=121.09  Aligned_cols=39  Identities=18%  Similarity=0.100  Sum_probs=20.6

Q ss_pred             hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ..+++|+.|++++| .++......+ ..+++|+.|+++++.
T Consensus       251 ~~l~~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~Ls~N~  289 (597)
T 3oja_B          251 LNYPGLVEVDLSYN-ELEKIMYHPF-VKMQRLERLYISNNR  289 (597)
T ss_dssp             GGCTTCSEEECCSS-CCCEEESGGG-TTCSSCCEEECTTSC
T ss_pred             ccCCCCCEEECCCC-ccCCCCHHHh-cCccCCCEEECCCCC
Confidence            35667777777764 3432211122 236666666666653

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=99.04  E-value=1.8e-10  Score=107.55  Aligned_cols=161  Identities=18%  Similarity=0.068  Sum_probs=94.2

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++.+.....   + .+..+++|++|+++  .+.++...    ...+++|++|+++++. ++...    ...++
T Consensus        42 ~~L~~L~Ls~n~l~~~---~-~l~~l~~L~~L~Ls--~n~l~~~~----~~~l~~L~~L~Ls~N~-l~~~~----~~~l~  106 (457)
T 3bz5_A           42 ATLTSLDCHNSSITDM---T-GIEKLTGLTKLICT--SNNITTLD----LSQNTNLTYLACDSNK-LTNLD----VTPLT  106 (457)
T ss_dssp             TTCCEEECCSSCCCCC---T-TGGGCTTCSEEECC--SSCCSCCC----CTTCTTCSEEECCSSC-CSCCC----CTTCT
T ss_pred             CCCCEEEccCCCcccC---h-hhcccCCCCEEEcc--CCcCCeEc----cccCCCCCEEECcCCC-Cceee----cCCCC
Confidence            4478888877654322   1 24567888888888  44444421    2346788888888763 33321    23477


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++ .+...  +  ...+++|++|+++++.  +....    ...+++|+.|+++++..++...    ...+++
T Consensus       107 ~L~~L~L~~N-~l~~l--~--~~~l~~L~~L~l~~N~--l~~l~----l~~l~~L~~L~l~~n~~~~~~~----~~~l~~  171 (457)
T 3bz5_A          107 KLTYLNCDTN-KLTKL--D--VSQNPLLTYLNCARNT--LTEID----VSHNTQLTELDCHLNKKITKLD----VTPQTQ  171 (457)
T ss_dssp             TCCEEECCSS-CCSCC--C--CTTCTTCCEEECTTSC--CSCCC----CTTCTTCCEEECTTCSCCCCCC----CTTCTT
T ss_pred             cCCEEECCCC-cCCee--c--CCCCCcCCEEECCCCc--cceec----cccCCcCCEEECCCCCcccccc----cccCCc
Confidence            8888888774 34332  1  3457788888887754  33211    3356777777777654333321    234677


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      |+.|+++++ .++..  .  ...+++|+.|+++++.
T Consensus       172 L~~L~ls~n-~l~~l--~--l~~l~~L~~L~l~~N~  202 (457)
T 3bz5_A          172 LTTLDCSFN-KITEL--D--VSQNKLLNRLNCDTNN  202 (457)
T ss_dssp             CCEEECCSS-CCCCC--C--CTTCTTCCEEECCSSC
T ss_pred             CCEEECCCC-cccee--c--cccCCCCCEEECcCCc
Confidence            777777774 34331  1  2246677777777664

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.02  E-value=7e-12  Score=111.45  Aligned_cols=56  Identities=25%  Similarity=0.221  Sum_probs=26.9

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKS  142 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~  142 (374)
                      .+++|+++++....  .....+..+++|+.|+++  .+.+.....   ...+++|++|+++++
T Consensus        35 ~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~---~~~l~~L~~L~Ls~n   90 (317)
T 3o53_A           35 NVKELDLSGNPLSQ--ISAADLAPFTKLELLNLS--SNVLYETLD---LESLSTLRTLDLNNN   90 (317)
T ss_dssp             GCSEEECTTSCCCC--CCHHHHTTCTTCCEEECT--TSCCEEEEE---ETTCTTCCEEECCSS
T ss_pred             CCCEEECcCCccCc--CCHHHhhCCCcCCEEECC--CCcCCcchh---hhhcCCCCEEECcCC
Confidence            36666666543321  122233456666666666  333322110   223556666666664

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=99.02  E-value=6.9e-11  Score=113.17  Aligned_cols=84  Identities=20%  Similarity=0.138  Sum_probs=44.0

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++++....  .....+..+++|++|+++  .+.+.......+ ..+++|++|+++++. ++..........++
T Consensus        50 ~~L~~L~Ls~n~i~~--~~~~~~~~l~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~~~~~~~~l~  123 (549)
T 2z81_A           50 ANLQVLILKSSRINT--IEGDAFYSLGSLEHLDLS--DNHLSSLSSSWF-GPLSSLKYLNLMGNP-YQTLGVTSLFPNLT  123 (549)
T ss_dssp             TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECT--TSCCCSCCHHHH-TTCTTCCEEECTTCC-CSSSCSSCSCTTCT
T ss_pred             CcccEEECCCCCcCc--cChhhccccccCCEEECC--CCccCccCHHHh-ccCCCCcEEECCCCc-ccccchhhhhhccC
Confidence            347777777654332  112234466777788777  444443332223 346777777777762 22111111123356


Q ss_pred             CCcEEeecCC
Q 017279          159 NLTRLNISGC  168 (374)
Q Consensus       159 ~L~~L~L~~~  168 (374)
                      +|++|+++++
T Consensus       124 ~L~~L~L~~n  133 (549)
T 2z81_A          124 NLQTLRIGNV  133 (549)
T ss_dssp             TCCEEEEEES
T ss_pred             CccEEECCCC
Confidence            6777777654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.01  E-value=2.1e-12  Score=121.54  Aligned_cols=232  Identities=18%  Similarity=0.142  Sum_probs=141.3

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++.+...  ......+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .+.......+ ..++
T Consensus        80 ~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~  152 (477)
T 2id5_A           80 FNLRTLGLRSNRLK--LIPLGVFTGLSNLTKLDIS--ENKIVILLDYMF-QDLYNLKSLEVGDN-DLVYISHRAF-SGLN  152 (477)
T ss_dssp             TTCCEEECCSSCCC--SCCTTSSTTCTTCCEEECT--TSCCCEECTTTT-TTCTTCCEEEECCT-TCCEECTTSS-TTCT
T ss_pred             ccCCEEECCCCcCC--ccCcccccCCCCCCEEECC--CCccccCChhHc-cccccCCEEECCCC-ccceeChhhc-cCCC
Confidence            45899999876543  1222334578999999998  444443221122 45789999999986 3332111112 3478


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++ .++... ......+++|+.|+++++.  +.... ...+..+++|+.|+++++....... .. .....+
T Consensus       153 ~L~~L~l~~n-~l~~~~-~~~l~~l~~L~~L~l~~n~--i~~~~-~~~~~~l~~L~~L~l~~~~~~~~~~-~~-~~~~~~  225 (477)
T 2id5_A          153 SLEQLTLEKC-NLTSIP-TEALSHLHGLIVLRLRHLN--INAIR-DYSFKRLYRLKVLEISHWPYLDTMT-PN-CLYGLN  225 (477)
T ss_dssp             TCCEEEEESC-CCSSCC-HHHHTTCTTCCEEEEESCC--CCEEC-TTCSCSCTTCCEEEEECCTTCCEEC-TT-TTTTCC
T ss_pred             CCCEEECCCC-cCcccC-hhHhcccCCCcEEeCCCCc--CcEeC-hhhcccCcccceeeCCCCccccccC-cc-cccCcc
Confidence            9999999885 443322 1234568999999998854  22211 1123467899999998765332211 11 112358


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA  318 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (374)
                      |+.|++++| .++.... .....+++|+.|+++++. ++....                  ..+..+++|++|+++++ .
T Consensus       226 L~~L~l~~n-~l~~~~~-~~~~~l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~L~~n-~  283 (477)
T 2id5_A          226 LTSLSITHC-NLTAVPY-LAVRHLVYLRFLNLSYNP-ISTIEG------------------SMLHELLRLQEIQLVGG-Q  283 (477)
T ss_dssp             CSEEEEESS-CCCSCCH-HHHTTCTTCCEEECCSSC-CCEECT------------------TSCTTCTTCCEEECCSS-C
T ss_pred             ccEEECcCC-cccccCH-HHhcCccccCeeECCCCc-CCccCh------------------hhccccccCCEEECCCC-c
Confidence            999999985 4543222 233458999999999875 442111                  11335689999999884 5


Q ss_pred             CCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      ++...       -..+..+++|+.|++++| .++..
T Consensus       284 l~~~~-------~~~~~~l~~L~~L~L~~N-~l~~~  311 (477)
T 2id5_A          284 LAVVE-------PYAFRGLNYLRVLNVSGN-QLTTL  311 (477)
T ss_dssp             CSEEC-------TTTBTTCTTCCEEECCSS-CCSCC
T ss_pred             cceEC-------HHHhcCcccCCEEECCCC-cCcee
Confidence            55311       113467889999999988 35543

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=99.01  E-value=8.3e-13  Score=128.12  Aligned_cols=39  Identities=10%  Similarity=-0.026  Sum_probs=20.7

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCC-CCceEEecCCcc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCS-GRHSLVMSGCLN  350 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~-~L~~L~ls~C~~  350 (374)
                      +..+++|++|+++++ .++.         +| .+..++ +|+.|++++++-
T Consensus       517 ~~~l~~L~~L~l~~N-~l~~---------~p~~~~~l~~~L~~l~l~~N~~  557 (606)
T 3vq2_A          517 YNQLYSLSTLDCSFN-RIET---------SKGILQHFPKSLAFFNLTNNSV  557 (606)
T ss_dssp             TTTCTTCCEEECTTS-CCCC---------EESCGGGSCTTCCEEECCSCCC
T ss_pred             ccCCCcCCEEECCCC-cCcc---------cCHhHhhhcccCcEEEccCCCc
Confidence            445566666666663 3441         11 123444 477777776653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=99.00  E-value=9.7e-12  Score=113.89  Aligned_cols=108  Identities=17%  Similarity=0.087  Sum_probs=50.5

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++++....  .....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++.- ...+...++
T Consensus        69 ~~L~~L~L~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~  141 (390)
T 3o6n_A           69 RQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMG--FNAIRYLPPHVF-QNVPLLTVLVLERN-DLSSL-PRGIFHNTP  141 (390)
T ss_dssp             CCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCCCCTTTT-TTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             ccCcEEECCCCcccc--cChhhccCCCCcCEEECC--CCCCCcCCHHHh-cCCCCCCEEECCCC-ccCcC-CHHHhcCCC
Confidence            346666666543321  111223456667777776  333332111111 23566777777665 22211 111123356


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCc
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  195 (374)
                      +|++|+++++ .+.... +.....+++|++|+++++.
T Consensus       142 ~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~  176 (390)
T 3o6n_A          142 KLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR  176 (390)
T ss_dssp             TCCEEECCSS-CCCBCC-TTTTSSCTTCCEEECCSSC
T ss_pred             CCcEEECCCC-ccCccC-hhhccCCCCCCEEECCCCc
Confidence            7777777663 232111 1112346677777776644

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.00  E-value=6.8e-12  Score=113.31  Aligned_cols=241  Identities=19%  Similarity=0.118  Sum_probs=147.7

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++++....  .....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++.... .....++
T Consensus        52 ~~L~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~  124 (353)
T 2z80_A           52 EAVKSLDLSNNRITY--ISNSDLQRCVNLQALVLT--SNGINTIEEDSF-SSLGSLEHLDLSYN-YLSNLSS-SWFKPLS  124 (353)
T ss_dssp             TTCCEEECTTSCCCE--ECTTTTTTCTTCCEEECT--TSCCCEECTTTT-TTCTTCCEEECCSS-CCSSCCH-HHHTTCT
T ss_pred             ccCcEEECCCCcCcc--cCHHHhccCCCCCEEECC--CCccCccCHhhc-CCCCCCCEEECCCC-cCCcCCH-hHhCCCc
Confidence            358899998765432  122234578999999998  445544222222 34789999999986 3433222 2234588


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++ .+...........+++|++|+++++.. +... .......+++|++|+++++. +.... ......+++
T Consensus       125 ~L~~L~L~~n-~l~~l~~~~~~~~l~~L~~L~l~~n~~-~~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~l~~l~~  199 (353)
T 2z80_A          125 SLTFLNLLGN-PYKTLGETSLFSHLTKLQILRVGNMDT-FTKI-QRKDFAGLTFLEELEIDASD-LQSYE-PKSLKSIQN  199 (353)
T ss_dssp             TCSEEECTTC-CCSSSCSSCSCTTCTTCCEEEEEESSS-CCEE-CTTTTTTCCEEEEEEEEETT-CCEEC-TTTTTTCSE
T ss_pred             cCCEEECCCC-CCcccCchhhhccCCCCcEEECCCCcc-cccc-CHHHccCCCCCCEEECCCCC-cCccC-HHHHhcccc
Confidence            9999999874 443211101234688999999987531 1111 11223457889999998754 33321 122345788


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA  318 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (374)
                      |++|+++++ .++... ..+...+++|+.|+++++. ++......+...               ...+.++.+++.+ ..
T Consensus       200 L~~L~l~~n-~l~~~~-~~~~~~~~~L~~L~L~~n~-l~~~~~~~l~~~---------------~~~~~l~~l~L~~-~~  260 (353)
T 2z80_A          200 VSHLILHMK-QHILLL-EIFVDVTSSVECLELRDTD-LDTFHFSELSTG---------------ETNSLIKKFTFRN-VK  260 (353)
T ss_dssp             EEEEEEECS-CSTTHH-HHHHHHTTTEEEEEEESCB-CTTCCCC---------------------CCCCCCEEEEES-CB
T ss_pred             CCeecCCCC-ccccch-hhhhhhcccccEEECCCCc-cccccccccccc---------------cccchhhcccccc-cc
Confidence            999999985 454322 3334458999999999875 443221111111               1247889999998 57


Q ss_pred             CCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                      +++..+..+...   +..+++|+.|++++|. ++..
T Consensus       261 l~~~~l~~l~~~---l~~l~~L~~L~Ls~N~-l~~i  292 (353)
T 2z80_A          261 ITDESLFQVMKL---LNQISGLLELEFSRNQ-LKSV  292 (353)
T ss_dssp             CCHHHHHHHHHH---HHTCTTCCEEECCSSC-CCCC
T ss_pred             ccCcchhhhHHH---HhcccCCCEEECCCCC-CCcc
Confidence            888777665432   3678999999999994 6643

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=99.00  E-value=1.1e-12  Score=126.29  Aligned_cols=40  Identities=13%  Similarity=0.052  Sum_probs=26.3

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      +..+++|++|++++| .++....       ..+..+++|+.|++++++
T Consensus       490 ~~~l~~L~~L~l~~n-~l~~~~~-------~~~~~l~~L~~L~l~~N~  529 (570)
T 2z63_A          490 FNSLSSLQVLNMASN-QLKSVPD-------GIFDRLTSLQKIWLHTNP  529 (570)
T ss_dssp             TTTCTTCCEEECCSS-CCSCCCT-------TTTTTCTTCCEEECCSSC
T ss_pred             hhcccCCCEEeCCCC-cCCCCCH-------HHhhcccCCcEEEecCCc
Confidence            345688888888884 4543110       124677888888888875

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=99.00  E-value=5.8e-10  Score=100.32  Aligned_cols=156  Identities=19%  Similarity=0.115  Sum_probs=83.2

Q ss_pred             HHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh-cCCCCCEEeccCCCC--CCH-
Q 017279          151 YALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR-NCNQLQSLNLGWCED--VGD-  226 (374)
Q Consensus       151 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~-~~~~L~~L~l~~~~~--~~~-  226 (374)
                      ..+...+|+|+.|.|+++.....   ..+  ..++|++|++..+.  ++.+.+..+.. .+|+|++|+|+...+  ..+ 
T Consensus       165 ~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~~--l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~  237 (362)
T 2ra8_A          165 SPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISGG--LPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDG  237 (362)
T ss_dssp             HHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECSB--CCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCS
T ss_pred             HHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecCC--CChHHHHHHHHccCCCCcEEEEeccccccccch
Confidence            34445566677776665422111   111  25667777776544  55555555543 467777776642110  001 


Q ss_pred             --HHHHHHH--hcCCCCCeeecCCCCCCCHHHHHHHHh--cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccc
Q 017279          227 --VGVMNLA--YGCPDLRSLDLCGCVCITDDSVIALAN--GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMK  300 (374)
Q Consensus       227 --~~~~~l~--~~~~~L~~L~l~~~~~l~~~~l~~l~~--~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~  300 (374)
                        ..+..+.  ..+|+|+.|++.+| .+++.....+.+  .+|+|++|+++.+. +++.+...+...             
T Consensus       238 ~~~~l~~~l~~~~~p~Lr~L~L~~~-~i~~~~~~~la~a~~~~~L~~LdLs~n~-L~d~G~~~L~~~-------------  302 (362)
T 2ra8_A          238 DMNVFRPLFSKDRFPNLKWLGIVDA-EEQNVVVEMFLESDILPQLETMDISAGV-LTDEGARLLLDH-------------  302 (362)
T ss_dssp             CGGGTGGGSCTTTCTTCCEEEEESC-TTHHHHHHHHHHCSSGGGCSEEECCSSC-CBHHHHHHHHTT-------------
T ss_pred             hHHHHHHHHhcCCCCCcCEEeCCCC-CCchHHHHHHHhCccCCCCCEEECCCCC-CChHHHHHHHhh-------------
Confidence              1111111  23677777777764 455444444443  35677777776653 777666665432             


Q ss_pred             cccCCCCCcEEecCCCCCCCHHHHHHHHhh
Q 017279          301 GRYDEEGLQSLNISQCTALTPPAVQALCDT  330 (374)
Q Consensus       301 ~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  330 (374)
                       +..+++|+.|++++| .+++..++.+.+.
T Consensus       303 -L~~l~~L~~L~L~~n-~i~d~~~~~l~~a  330 (362)
T 2ra8_A          303 -VDKIKHLKFINMKYN-YLSDEMKKELQKS  330 (362)
T ss_dssp             -HHHHTTCSEEECCSB-BCCHHHHHHHHHH
T ss_pred             -cccCCcceEEECCCC-cCCHHHHHHHHHH
Confidence             012467777777764 5777777766543

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=98.99  E-value=3.5e-10  Score=108.27  Aligned_cols=199  Identities=14%  Similarity=0.082  Sum_probs=102.4

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHH--HhcCCCCcEEeecCCCCCCHHH-HHHHH
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYAL--AHGCPNLTRLNISGCTSFSDHA-LAYLC  180 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~L~~~~~~~~~~-~~~l~  180 (374)
                      .++++.++++  .+.+.. ....+...+++|++|+++++ .+.+......  ...+++|++|+++++ .++... .....
T Consensus       309 ~~~L~~L~l~--~n~l~~-ip~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~  383 (549)
T 2z81_A          309 LEKVKRITVE--NSKVFL-VPCSFSQHLKSLEFLDLSEN-LMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEIL  383 (549)
T ss_dssp             STTCCEEEEE--SSCCCC-CCHHHHHHCTTCCEEECCSS-CCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHG
T ss_pred             cccceEEEec--cCcccc-CCHHHHhcCccccEEEccCC-ccccccccchhhhhccccCcEEEccCC-cccccccchhhh
Confidence            3455566665  222221 11122234666777777665 3444332221  223566777777664 333221 12234


Q ss_pred             hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279          181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~  260 (374)
                      ..+++|++|+++++.  +.  .+......+++|+.|+++++. ++..  ..  ...++|+.|++++| .++..     ..
T Consensus       384 ~~l~~L~~L~Ls~N~--l~--~lp~~~~~~~~L~~L~Ls~N~-l~~l--~~--~~~~~L~~L~Ls~N-~l~~~-----~~  448 (549)
T 2z81_A          384 LTLKNLTSLDISRNT--FH--PMPDSCQWPEKMRFLNLSSTG-IRVV--KT--CIPQTLEVLDVSNN-NLDSF-----SL  448 (549)
T ss_dssp             GGCTTCCEEECTTCC--CC--CCCSCCCCCTTCCEEECTTSC-CSCC--CT--TSCTTCSEEECCSS-CCSCC-----CC
T ss_pred             hcCCCCCEEECCCCC--Cc--cCChhhcccccccEEECCCCC-cccc--cc--hhcCCceEEECCCC-Chhhh-----cc
Confidence            456667777776643  22  111122345666777776643 2210  00  01246777777764 34321     13


Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCC
Q 017279          261 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR  340 (374)
Q Consensus       261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L  340 (374)
                      .+++|+.|+++++. ++.  +..                  ...+++|+.|++++ +.++....       ..+..+++|
T Consensus       449 ~l~~L~~L~Ls~N~-l~~--ip~------------------~~~l~~L~~L~Ls~-N~l~~~~~-------~~~~~l~~L  499 (549)
T 2z81_A          449 FLPRLQELYISRNK-LKT--LPD------------------ASLFPVLLVMKISR-NQLKSVPD-------GIFDRLTSL  499 (549)
T ss_dssp             CCTTCCEEECCSSC-CSS--CCC------------------GGGCTTCCEEECCS-SCCCCCCT-------TGGGGCTTC
T ss_pred             cCChhcEEECCCCc-cCc--CCC------------------cccCccCCEEecCC-CccCCcCH-------HHHhcCccc
Confidence            46777777777764 431  111                  11358899999998 45653111       124678899


Q ss_pred             ceEEecCCccc
Q 017279          341 HSLVMSGCLNL  351 (374)
Q Consensus       341 ~~L~ls~C~~l  351 (374)
                      +.|++++|+-.
T Consensus       500 ~~L~l~~N~~~  510 (549)
T 2z81_A          500 QKIWLHTNPWD  510 (549)
T ss_dssp             CEEECCSSCBC
T ss_pred             CEEEecCCCcc
Confidence            99999998743

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.99  E-value=1.5e-11  Score=115.87  Aligned_cols=213  Identities=20%  Similarity=0.167  Sum_probs=119.3

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++++....  ..+..+..+++|+.|+++  .+.++....   ...+++|++|+++++ .++.     + ...++
T Consensus        35 ~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~-----l-~~~~~  100 (487)
T 3oja_A           35 NVKELDLSGNPLSQ--ISAADLAPFTKLELLNLS--SNVLYETLD---LESLSTLRTLDLNNN-YVQE-----L-LVGPS  100 (487)
T ss_dssp             GCCEEECCSSCCCC--CCGGGGTTCTTCCEEECT--TSCCEEEEE---CTTCTTCCEEECCSS-EEEE-----E-EECTT
T ss_pred             CccEEEeeCCcCCC--CCHHHHhCCCCCCEEEee--CCCCCCCcc---cccCCCCCEEEecCC-cCCC-----C-CCCCC
Confidence            47888887765432  122334577888888888  444432111   234778888888876 3322     1 12477


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++ .+....    ...+++|+.|+++++.  +.... ......+++|+.|+++++. +++.....+...+++|
T Consensus       101 L~~L~L~~N-~l~~~~----~~~l~~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~~~l~~~l~~L  171 (487)
T 3oja_A          101 IETLHAANN-NISRVS----CSRGQGKKNIYLANNK--ITMLR-DLDEGCRSRVQYLDLKLNE-IDTVNFAELAASSDTL  171 (487)
T ss_dssp             CCEEECCSS-CCCCEE----ECCCSSCEEEECCSSC--CCSGG-GBCGGGGSSEEEEECTTSC-CCEEEGGGGGGGTTTC
T ss_pred             cCEEECcCC-cCCCCC----ccccCCCCEEECCCCC--CCCCC-chhhcCCCCCCEEECCCCC-CCCcChHHHhhhCCcc
Confidence            888888764 333211    1235778888887754  33211 1122346778888887753 4443333344456788


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL  319 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  319 (374)
                      +.|++++| .++..  .... .+++|+.|+++++. ++...                   ..+..+++|+.|++++ +.+
T Consensus       172 ~~L~Ls~N-~l~~~--~~~~-~l~~L~~L~Ls~N~-l~~~~-------------------~~~~~l~~L~~L~Ls~-N~l  226 (487)
T 3oja_A          172 EHLNLQYN-FIYDV--KGQV-VFAKLKTLDLSSNK-LAFMG-------------------PEFQSAAGVTWISLRN-NKL  226 (487)
T ss_dssp             CEEECTTS-CCCEE--ECCC-CCTTCCEEECCSSC-CCEEC-------------------GGGGGGTTCSEEECTT-SCC
T ss_pred             cEEecCCC-ccccc--cccc-cCCCCCEEECCCCC-CCCCC-------------------HhHcCCCCccEEEecC-CcC
Confidence            88888874 34321  1111 36778888887774 44210                   0122346777777777 345


Q ss_pred             CHHHHHHHHhhCC-CccCCCCCceEEecCCc
Q 017279          320 TPPAVQALCDTFP-ALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       320 ~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~  349 (374)
                      +.         +| .+..+++|+.|++++|+
T Consensus       227 ~~---------lp~~l~~l~~L~~L~l~~N~  248 (487)
T 3oja_A          227 VL---------IEKALRFSQNLEHFDLRGNG  248 (487)
T ss_dssp             CE---------ECTTCCCCTTCCEEECTTCC
T ss_pred             cc---------cchhhccCCCCCEEEcCCCC
Confidence            42         12 34556777777777765

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=98.98  E-value=7.9e-10  Score=97.68  Aligned_cols=172  Identities=17%  Similarity=0.167  Sum_probs=119.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      +++|++|+++++ .+..  +..+ ..+++|++|+++++ .+.+..  . ...+++|++|+++++.  +...  . ....+
T Consensus        40 l~~L~~L~l~~~-~i~~--l~~~-~~l~~L~~L~L~~n-~i~~~~--~-~~~l~~L~~L~L~~n~--l~~~--~-~~~~l  106 (308)
T 1h6u_A           40 LDGITTLSAFGT-GVTT--IEGV-QYLNNLIGLELKDN-QITDLA--P-LKNLTKITELELSGNP--LKNV--S-AIAGL  106 (308)
T ss_dssp             HHTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECCSS-CCCCCG--G-GTTCCSCCEEECCSCC--CSCC--G-GGTTC
T ss_pred             cCCcCEEEeeCC-CccC--chhh-hccCCCCEEEccCC-cCCCCh--h-HccCCCCCEEEccCCc--CCCc--h-hhcCC
Confidence            568899999886 3332  1222 44899999999985 444322  2 5678999999999865  3332  2 24468


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      ++|++|+++++. +++.  .. ...+++|+.|++++| .++...  . ...+++|+.|++++|. +++...         
T Consensus       107 ~~L~~L~l~~n~-l~~~--~~-l~~l~~L~~L~l~~n-~l~~~~--~-l~~l~~L~~L~l~~n~-l~~~~~---------  168 (308)
T 1h6u_A          107 QSIKTLDLTSTQ-ITDV--TP-LAGLSNLQVLYLDLN-QITNIS--P-LAGLTNLQYLSIGNAQ-VSDLTP---------  168 (308)
T ss_dssp             TTCCEEECTTSC-CCCC--GG-GTTCTTCCEEECCSS-CCCCCG--G-GGGCTTCCEEECCSSC-CCCCGG---------
T ss_pred             CCCCEEECCCCC-CCCc--hh-hcCCCCCCEEECCCC-ccCcCc--c-ccCCCCccEEEccCCc-CCCChh---------
Confidence            999999999865 4442  22 457899999999996 454322  1 3468999999999985 543111         


Q ss_pred             CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                                 +..+++|+.|+++++ .+++         ++.+..+++|+.|++++|. ++...
T Consensus       169 -----------l~~l~~L~~L~l~~n-~l~~---------~~~l~~l~~L~~L~L~~N~-l~~~~  211 (308)
T 1h6u_A          169 -----------LANLSKLTTLKADDN-KISD---------ISPLASLPNLIEVHLKNNQ-ISDVS  211 (308)
T ss_dssp             -----------GTTCTTCCEEECCSS-CCCC---------CGGGGGCTTCCEEECTTSC-CCBCG
T ss_pred             -----------hcCCCCCCEEECCCC-ccCc---------ChhhcCCCCCCEEEccCCc-cCccc
Confidence                       224589999999984 5653         2225678999999999995 65544

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.97  E-value=4.4e-10  Score=98.47  Aligned_cols=35  Identities=20%  Similarity=0.124  Sum_probs=19.0

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          305 EEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      +++|++|+++++ .+++         ++.+..+++|+.|++++++
T Consensus       177 l~~L~~L~L~~N-~i~~---------l~~l~~l~~L~~L~l~~n~  211 (291)
T 1h6t_A          177 LTKLQNLYLSKN-HISD---------LRALAGLKNLDVLELFSQE  211 (291)
T ss_dssp             CTTCCEEECCSS-CCCB---------CGGGTTCTTCSEEEEEEEE
T ss_pred             CCccCEEECCCC-cCCC---------ChhhccCCCCCEEECcCCc
Confidence            356666666663 4442         2233455666666666653

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=98.96  E-value=5.8e-13  Score=118.23  Aligned_cols=229  Identities=18%  Similarity=0.099  Sum_probs=144.0

Q ss_pred             ccCceeeccc-ccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcC
Q 017279           79 LGLTHLSLSW-CKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGC  157 (374)
Q Consensus        79 ~~l~~L~l~~-~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  157 (374)
                      ..+++|+++. .....  ..+..+..+++|++|+++  .+.+.......+ ..+++|++|+++++. +.......+ ..+
T Consensus        76 ~~L~~L~L~~~n~l~~--~~p~~l~~l~~L~~L~Ls--~n~l~~~~p~~~-~~l~~L~~L~Ls~N~-l~~~~p~~~-~~l  148 (313)
T 1ogq_A           76 PYLNFLYIGGINNLVG--PIPPAIAKLTQLHYLYIT--HTNVSGAIPDFL-SQIKTLVTLDFSYNA-LSGTLPPSI-SSL  148 (313)
T ss_dssp             TTCSEEEEEEETTEES--CCCGGGGGCTTCSEEEEE--EECCEEECCGGG-GGCTTCCEEECCSSE-EESCCCGGG-GGC
T ss_pred             CCCCeeeCCCCCcccc--cCChhHhcCCCCCEEECc--CCeeCCcCCHHH-hCCCCCCEEeCCCCc-cCCcCChHH-hcC
Confidence            4589999984 33221  122334688999999999  444442222222 348999999999973 322111222 348


Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCC-CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCR-KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~-~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      ++|++|+++++ .+... ++.....++ +|++|+++++.  +.... ......++ |+.|+++++. +... .......+
T Consensus       149 ~~L~~L~L~~N-~l~~~-~p~~l~~l~~~L~~L~L~~N~--l~~~~-~~~~~~l~-L~~L~Ls~N~-l~~~-~~~~~~~l  220 (313)
T 1ogq_A          149 PNLVGITFDGN-RISGA-IPDSYGSFSKLFTSMTISRNR--LTGKI-PPTFANLN-LAFVDLSRNM-LEGD-ASVLFGSD  220 (313)
T ss_dssp             TTCCEEECCSS-CCEEE-CCGGGGCCCTTCCEEECCSSE--EEEEC-CGGGGGCC-CSEEECCSSE-EEEC-CGGGCCTT
T ss_pred             CCCCeEECcCC-cccCc-CCHHHhhhhhcCcEEECcCCe--eeccC-ChHHhCCc-ccEEECcCCc-ccCc-CCHHHhcC
Confidence            99999999985 33311 112233465 99999999865  33211 11223344 9999998864 3321 12233468


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                      ++|+.|+++++ .++.. +.. ...+++|+.|+++++. ++.....                  .+..+++|++|+++++
T Consensus       221 ~~L~~L~L~~N-~l~~~-~~~-~~~l~~L~~L~Ls~N~-l~~~~p~------------------~l~~l~~L~~L~Ls~N  278 (313)
T 1ogq_A          221 KNTQKIHLAKN-SLAFD-LGK-VGLSKNLNGLDLRNNR-IYGTLPQ------------------GLTQLKFLHSLNVSFN  278 (313)
T ss_dssp             SCCSEEECCSS-EECCB-GGG-CCCCTTCCEEECCSSC-CEECCCG------------------GGGGCTTCCEEECCSS
T ss_pred             CCCCEEECCCC-ceeee-cCc-ccccCCCCEEECcCCc-ccCcCCh------------------HHhcCcCCCEEECcCC
Confidence            99999999995 44321 111 2357999999999985 4421111                  2335689999999994


Q ss_pred             CCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279          317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~  353 (374)
                       .++        ...|....+++|+.|++++++.+.+
T Consensus       279 -~l~--------~~ip~~~~l~~L~~l~l~~N~~lc~  306 (313)
T 1ogq_A          279 -NLC--------GEIPQGGNLQRFDVSAYANNKCLCG  306 (313)
T ss_dssp             -EEE--------EECCCSTTGGGSCGGGTCSSSEEES
T ss_pred             -ccc--------ccCCCCccccccChHHhcCCCCccC
Confidence             454        2456667789999999999986654

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=98.95  E-value=6.1e-12  Score=122.02  Aligned_cols=228  Identities=18%  Similarity=0.107  Sum_probs=145.4

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHH-HHHHHhcC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRS-LYALAHGC  157 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~  157 (374)
                      ..++.+++..+...  . ++.+  .+++|+.|+++ .+......   . ...+++|++|+++++ .++... .......+
T Consensus       307 ~~L~~L~l~~n~l~--~-lp~~--~l~~L~~L~l~-~n~~~~~~---~-~~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~  375 (606)
T 3vq2_A          307 FKWQSLSIIRCQLK--Q-FPTL--DLPFLKSLTLT-MNKGSISF---K-KVALPSLSYLDLSRN-ALSFSGCCSYSDLGT  375 (606)
T ss_dssp             CCCSEEEEESCCCS--S-CCCC--CCSSCCEEEEE-SCSSCEEC---C-CCCCTTCCEEECCSS-CEEEEEECCHHHHCC
T ss_pred             ccCCEEEcccccCc--c-cccC--CCCccceeecc-CCcCccch---h-hccCCCCCEEECcCC-ccCCCcchhhhhccC
Confidence            35889999887652  1 2222  78999999999 44333322   1 124789999999987 332211 01223458


Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|++|+++++. +..  ++.....+++|++|+++++.  +...........+++|+.|+++++. +... .......++
T Consensus       376 ~~L~~L~L~~n~-l~~--~~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~-~~~~~~~l~  448 (606)
T 3vq2_A          376 NSLRHLDLSFNG-AII--MSANFMGLEELQHLDFQHST--LKRVTEFSAFLSLEKLLYLDISYTN-TKID-FDGIFLGLT  448 (606)
T ss_dssp             SCCCEEECCSCS-EEE--ECCCCTTCTTCCEEECTTSE--EESTTTTTTTTTCTTCCEEECTTSC-CEEC-CTTTTTTCT
T ss_pred             CcccEeECCCCc-ccc--chhhccCCCCCCeeECCCCc--cCCccChhhhhccccCCEEECcCCC-CCcc-chhhhcCCC
Confidence            999999999853 322  11223458999999999865  3322211234568999999999865 3221 112234689


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +|++|++++| .++...+......+++|+.|++++|. ++....                  ..+..+++|++|+++++ 
T Consensus       449 ~L~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~Ls~n~-l~~~~~------------------~~~~~l~~L~~L~Ls~N-  507 (606)
T 3vq2_A          449 SLNTLKMAGN-SFKDNTLSNVFANTTNLTFLDLSKCQ-LEQISW------------------GVFDTLHRLQLLNMSHN-  507 (606)
T ss_dssp             TCCEEECTTC-EEGGGEECSCCTTCTTCCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECCSS-
T ss_pred             CCCEEECCCC-cCCCcchHHhhccCCCCCEEECCCCc-CCccCh------------------hhhcccccCCEEECCCC-
Confidence            9999999996 44432222233458999999999985 543111                  11335689999999995 


Q ss_pred             CCCHHHHHHHHhhCCCccCCCCCceEEecCCccccc
Q 017279          318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~  353 (374)
                      .++....       ..+..+++|+.|++++|. ++.
T Consensus       508 ~l~~~~~-------~~~~~l~~L~~L~l~~N~-l~~  535 (606)
T 3vq2_A          508 NLLFLDS-------SHYNQLYSLSTLDCSFNR-IET  535 (606)
T ss_dssp             CCSCEEG-------GGTTTCTTCCEEECTTSC-CCC
T ss_pred             cCCCcCH-------HHccCCCcCCEEECCCCc-Ccc
Confidence            5653211       124678999999999995 654

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.95  E-value=3.8e-11  Score=119.78  Aligned_cols=155  Identities=12%  Similarity=0.085  Sum_probs=81.3

Q ss_pred             ccCceeecccccccchH---------------HHHHHhh--cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC
Q 017279           79 LGLTHLSLSWCKNNMNN---------------LVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK  141 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~---------------~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  141 (374)
                      ..++.|+++.+......               .++....  .+++|+.|+++ .+ .+.......+ ..+++|+.|++++
T Consensus       448 ~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls-~N-~l~~~iP~~l-~~L~~L~~L~Ls~  524 (876)
T 4ecn_A          448 TKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELY-NC-PNMTQLPDFL-YDLPELQSLNIAC  524 (876)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE-SC-TTCCSCCGGG-GGCSSCCEEECTT
T ss_pred             CCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECc-CC-CCCccChHHH-hCCCCCCEEECcC
Confidence            44788888776544310               1222222  67888888888 33 2222222222 3477888888888


Q ss_pred             CCCCCH-HHHHHHH------hcCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCC
Q 017279          142 SFKLSD-RSLYALA------HGCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQ  212 (374)
Q Consensus       142 ~~~~~~-~~~~~l~------~~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~  212 (374)
                      +..++. .....+.      ..+++|+.|+++++ .+.  .++.  ....+++|+.|+++++.  +.  .++ ....+++
T Consensus       525 N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N-~L~--~ip~~~~l~~L~~L~~L~Ls~N~--l~--~lp-~~~~L~~  596 (876)
T 4ecn_A          525 NRGISAAQLKADWTRLADDEDTGPKIQIFYMGYN-NLE--EFPASASLQKMVKLGLLDCVHNK--VR--HLE-AFGTNVK  596 (876)
T ss_dssp             CTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSS-CCC--BCCCHHHHTTCTTCCEEECTTSC--CC--BCC-CCCTTSE
T ss_pred             CCCcccccchHHHHhhhhcccccCCccEEEeeCC-cCC--ccCChhhhhcCCCCCEEECCCCC--cc--cch-hhcCCCc
Confidence            643554 2222222      23458888888774 444  2333  34557778888877654  22  222 2334566


Q ss_pred             CCEEeccCCCCCCHHHHHHHHhcCCC-CCeeecCCC
Q 017279          213 LQSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGC  247 (374)
Q Consensus       213 L~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~  247 (374)
                      |+.|+++++. +..  +......+++ |+.|++++|
T Consensus       597 L~~L~Ls~N~-l~~--lp~~l~~l~~~L~~L~Ls~N  629 (876)
T 4ecn_A          597 LTDLKLDYNQ-IEE--IPEDFCAFTDQVEGLGFSHN  629 (876)
T ss_dssp             ESEEECCSSC-CSC--CCTTSCEECTTCCEEECCSS
T ss_pred             ceEEECcCCc-ccc--chHHHhhccccCCEEECcCC
Confidence            6666666543 221  1111223445 566666553

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=98.94  E-value=3.9e-12  Score=118.44  Aligned_cols=207  Identities=20%  Similarity=0.165  Sum_probs=132.8

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++ .++...... ...+++|++|+++++ .++... ...+..++
T Consensus        64 ~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~i~~~~-~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~  136 (440)
T 3zyj_A           64 TNTRLLNLH--ENQIQIIKVNSF-KHLRHLEILQLSRN-HIRTIEIGA-FNGLANLNTLELFDN-RLTTIP-NGAFVYLS  136 (440)
T ss_dssp             TTCSEEECC--SCCCCEECTTTT-SSCSSCCEEECCSS-CCCEECGGG-GTTCSSCCEEECCSS-CCSSCC-TTTSCSCS
T ss_pred             CCCcEEEcc--CCcCCeeCHHHh-hCCCCCCEEECCCC-cCCccChhh-ccCCccCCEEECCCC-cCCeeC-HhHhhccc
Confidence            679999999  455544322222 35889999999997 343322222 234899999999985 444211 11234689


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|+++++.  +.... ...+..+++|++|+++++..+.... ......+++|+.|++++| .++.  +..+ ..+++
T Consensus       137 ~L~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~  208 (440)
T 3zyj_A          137 KLKELWLRNNP--IESIP-SYAFNRIPSLRRLDLGELKRLSYIS-EGAFEGLSNLRYLNLAMC-NLRE--IPNL-TPLIK  208 (440)
T ss_dssp             SCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCSSCCEEECTTS-CCSS--CCCC-TTCSS
T ss_pred             cCceeeCCCCc--ccccC-HHHhhhCcccCEeCCCCCCCcceeC-cchhhcccccCeecCCCC-cCcc--cccc-CCCcc
Confidence            99999999854  33111 1234468999999998765443321 112346899999999996 4542  2222 34789


Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279          265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV  344 (374)
Q Consensus       265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~  344 (374)
                      |+.|+++++. ++....                  ..+..+++|+.|++++ +.++....       ..+..+++|+.|+
T Consensus       209 L~~L~Ls~N~-l~~~~~------------------~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~~L~~L~  261 (440)
T 3zyj_A          209 LDELDLSGNH-LSAIRP------------------GSFQGLMHLQKLWMIQ-SQIQVIER-------NAFDNLQSLVEIN  261 (440)
T ss_dssp             CCEEECTTSC-CCEECT------------------TTTTTCTTCCEEECTT-CCCCEECT-------TSSTTCTTCCEEE
T ss_pred             cCEEECCCCc-cCccCh------------------hhhccCccCCEEECCC-CceeEECh-------hhhcCCCCCCEEE
Confidence            9999999885 543111                  1234569999999998 45653211       1346789999999


Q ss_pred             ecCCcccccc
Q 017279          345 MSGCLNLTSV  354 (374)
Q Consensus       345 ls~C~~l~~~  354 (374)
                      +++| +++..
T Consensus       262 L~~N-~l~~~  270 (440)
T 3zyj_A          262 LAHN-NLTLL  270 (440)
T ss_dssp             CTTS-CCCCC
T ss_pred             CCCC-CCCcc
Confidence            9998 46543

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.94  E-value=3.5e-09  Score=95.20  Aligned_cols=177  Identities=21%  Similarity=0.220  Sum_probs=122.5

Q ss_pred             hhcCCCCcEEEeeCCCCC-------CChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCH
Q 017279          101 APKLTKLQTLVLRQDKPQ-------LEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSD  173 (374)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~-------~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~  173 (374)
                      ...+++|+.|.+. ....       ++...+..+...+|+|++|.+.++..+.-   ..+  ..++|++|++..| .+++
T Consensus       135 ~~~l~~L~~L~l~-~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l~l---~~~--~~~~L~~L~L~~~-~l~~  207 (362)
T 2ra8_A          135 KEKFAHFEGLFWG-DIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI---GKK--PRPNLKSLEIISG-GLPD  207 (362)
T ss_dssp             HHHHTTCSEEEEC-CCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTCBC---CSC--BCTTCSEEEEECS-BCCH
T ss_pred             hhhcchhhheeec-CcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCcee---ccc--cCCCCcEEEEecC-CCCh
Confidence            4467899999986 2211       11112445666789999999988632221   111  2689999999874 6888


Q ss_pred             HHHHHHHh-cCCCCcEEEcCCCccCc-cH---HHHHHHH--hcCCCCCEEeccCCCCCCHHHHHHHHh--cCCCCCeeec
Q 017279          174 HALAYLCG-FCRKLKILNLCGCVKAA-TD---YALQAIG--RNCNQLQSLNLGWCEDVGDVGVMNLAY--GCPDLRSLDL  244 (374)
Q Consensus       174 ~~~~~l~~-~~~~L~~L~L~~~~~~~-~~---~~~~~l~--~~~~~L~~L~l~~~~~~~~~~~~~l~~--~~~~L~~L~l  244 (374)
                      ..+..+.. .+|+|++|+|....+.. .+   ..+..+.  ..+|+|+.|++.++. +.+.....+..  .+|+|++|++
T Consensus       208 ~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~~-i~~~~~~~la~a~~~~~L~~LdL  286 (362)
T 2ra8_A          208 SVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAE-EQNVVVEMFLESDILPQLETMDI  286 (362)
T ss_dssp             HHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESCT-THHHHHHHHHHCSSGGGCSEEEC
T ss_pred             HHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCCC-CchHHHHHHHhCccCCCCCEEEC
Confidence            88777653 69999999986321100 11   1112222  358999999998854 66555555543  4789999999


Q ss_pred             CCCCCCCHHHHHHHHh---cCCCCceEecCCCCCCCHHHHHHHHhc
Q 017279          245 CGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRAIYSLAQS  287 (374)
Q Consensus       245 ~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~~~~l~~~  287 (374)
                      +. +.+++.+...+..   .+++|+.|++++|. +++.++..+...
T Consensus       287 s~-n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~-i~d~~~~~l~~a  330 (362)
T 2ra8_A          287 SA-GVLTDEGARLLLDHVDKIKHLKFINMKYNY-LSDEMKKELQKS  330 (362)
T ss_dssp             CS-SCCBHHHHHHHHTTHHHHTTCSEEECCSBB-CCHHHHHHHHHH
T ss_pred             CC-CCCChHHHHHHHhhcccCCcceEEECCCCc-CCHHHHHHHHHH
Confidence            88 5799887766654   47999999999885 999999999874

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.94  E-value=7.4e-12  Score=116.99  Aligned_cols=207  Identities=17%  Similarity=0.147  Sum_probs=132.5

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++ .++......+ ..+++|++|+|+++ .++... ......++
T Consensus        75 ~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~Ls~n-~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~  147 (452)
T 3zyi_A           75 SNTRYLNLM--ENNIQMIQADTF-RHLHHLEVLQLGRN-SIRQIEVGAF-NGLASLNTLELFDN-WLTVIP-SGAFEYLS  147 (452)
T ss_dssp             TTCSEEECC--SSCCCEECTTTT-TTCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCSBCC-TTTSSSCT
T ss_pred             CCccEEECc--CCcCceECHHHc-CCCCCCCEEECCCC-ccCCcChhhc-cCcccCCEEECCCC-cCCccC-hhhhcccC
Confidence            689999999  455544322222 35889999999987 4433221222 34799999999985 443211 11234589


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|+++++.  +.... ...+..+++|+.|+++++..+.... ......+++|+.|++++| .++.  +..+ ..+++
T Consensus       148 ~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~l~~~~~l~~i~-~~~~~~l~~L~~L~L~~n-~l~~--~~~~-~~l~~  219 (452)
T 3zyi_A          148 KLRELWLRNNP--IESIP-SYAFNRVPSLMRLDLGELKKLEYIS-EGAFEGLFNLKYLNLGMC-NIKD--MPNL-TPLVG  219 (452)
T ss_dssp             TCCEEECCSCC--CCEEC-TTTTTTCTTCCEEECCCCTTCCEEC-TTTTTTCTTCCEEECTTS-CCSS--CCCC-TTCTT
T ss_pred             CCCEEECCCCC--cceeC-HhHHhcCCcccEEeCCCCCCccccC-hhhccCCCCCCEEECCCC-cccc--cccc-ccccc
Confidence            99999999854  33111 1234568999999998765444321 112346799999999995 4542  1222 34789


Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279          265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV  344 (374)
Q Consensus       265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~  344 (374)
                      |+.|+++++. ++....                  ..+..+++|+.|++++ +.++....       ..+..+++|+.|+
T Consensus       220 L~~L~Ls~N~-l~~~~~------------------~~~~~l~~L~~L~L~~-n~l~~~~~-------~~~~~l~~L~~L~  272 (452)
T 3zyi_A          220 LEELEMSGNH-FPEIRP------------------GSFHGLSSLKKLWVMN-SQVSLIER-------NAFDGLASLVELN  272 (452)
T ss_dssp             CCEEECTTSC-CSEECG------------------GGGTTCTTCCEEECTT-SCCCEECT-------TTTTTCTTCCEEE
T ss_pred             ccEEECcCCc-CcccCc------------------ccccCccCCCEEEeCC-CcCceECH-------HHhcCCCCCCEEE
Confidence            9999999885 443111                  1234568999999998 45653211       1246789999999


Q ss_pred             ecCCcccccc
Q 017279          345 MSGCLNLTSV  354 (374)
Q Consensus       345 ls~C~~l~~~  354 (374)
                      +++| +++..
T Consensus       273 L~~N-~l~~~  281 (452)
T 3zyi_A          273 LAHN-NLSSL  281 (452)
T ss_dssp             CCSS-CCSCC
T ss_pred             CCCC-cCCcc
Confidence            9999 46544

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.94  E-value=2.9e-11  Score=116.96  Aligned_cols=244  Identities=14%  Similarity=0.055  Sum_probs=110.8

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++++....  .....+..+++|+.|+++  .+.+....... ...+++|++|+++++ .++.- ...+...++
T Consensus        75 ~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~-~~~l~~L~~L~L~~n-~l~~l-~~~~~~~l~  147 (597)
T 3oja_B           75 RQVELLNLNDLQIEE--IDTYAFAYAHTIQKLYMG--FNAIRYLPPHV-FQNVPLLTVLVLERN-DLSSL-PRGIFHNTP  147 (597)
T ss_dssp             CCCSEEECTTSCCCE--ECTTTTTTCTTCCEEECC--SSCCCCCCTTT-TTTCTTCCEEECCSS-CCCCC-CTTTTTTCT
T ss_pred             CCCcEEECCCCCCCC--CChHHhcCCCCCCEEECC--CCcCCCCCHHH-HcCCCCCCEEEeeCC-CCCCC-CHHHhccCC
Confidence            346667766554321  111233456677777776  33333221111 133667777777765 23211 111123366


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHH----------
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG----------  228 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~----------  228 (374)
                      +|++|+++++ .+.... +.....+++|++|+++++.  +....    ...+++|+.|+++++. ++...          
T Consensus       148 ~L~~L~Ls~N-~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~~~----~~~l~~L~~L~l~~n~-l~~l~~~~~L~~L~l  218 (597)
T 3oja_B          148 KLTTLSMSNN-NLERIE-DDTFQATTSLQNLQLSSNR--LTHVD----LSLIPSLFHANVSYNL-LSTLAIPIAVEELDA  218 (597)
T ss_dssp             TCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECTTSC--CSBCC----GGGCTTCSEEECCSSC-CSEEECCTTCSEEEC
T ss_pred             CCCEEEeeCC-cCCCCC-hhhhhcCCcCcEEECcCCC--CCCcC----hhhhhhhhhhhcccCc-cccccCCchhheeec
Confidence            7777777764 332211 1112346777777777644  22211    2235555555554432 11100          


Q ss_pred             ----HHHH-HhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccccc---
Q 017279          229 ----VMNL-AYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWESM---  299 (374)
Q Consensus       229 ----~~~l-~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~~~---  299 (374)
                          +..+ ....++|+.|++++| .+++.  . ....+++|+.|+++++. ++......+.... +.......+.+   
T Consensus       219 s~n~l~~~~~~~~~~L~~L~L~~n-~l~~~--~-~l~~l~~L~~L~Ls~N~-l~~~~~~~~~~l~~L~~L~Ls~N~l~~l  293 (597)
T 3oja_B          219 SHNSINVVRGPVNVELTILKLQHN-NLTDT--A-WLLNYPGLVEVDLSYNE-LEKIMYHPFVKMQRLERLYISNNRLVAL  293 (597)
T ss_dssp             CSSCCCEEECSCCSCCCEEECCSS-CCCCC--G-GGGGCTTCSEEECCSSC-CCEEESGGGTTCSSCCEEECTTSCCCEE
T ss_pred             cCCcccccccccCCCCCEEECCCC-CCCCC--h-hhccCCCCCEEECCCCc-cCCCCHHHhcCccCCCEEECCCCCCCCC
Confidence                0000 001245666666664 33321  1 22347888888888774 4432111111110 00000111111   


Q ss_pred             -ccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCcccccc
Q 017279          300 -KGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       300 -~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                       ..+..+++|+.|++++| .++.         +| .+..+++|+.|++++|. ++..
T Consensus       294 ~~~~~~l~~L~~L~Ls~N-~l~~---------i~~~~~~l~~L~~L~L~~N~-l~~~  339 (597)
T 3oja_B          294 NLYGQPIPTLKVLDLSHN-HLLH---------VERNQPQFDRLENLYLDHNS-IVTL  339 (597)
T ss_dssp             ECSSSCCTTCCEEECCSS-CCCC---------CGGGHHHHTTCSEEECCSSC-CCCC
T ss_pred             CcccccCCCCcEEECCCC-CCCc---------cCcccccCCCCCEEECCCCC-CCCc
Confidence             11345677777777763 4441         11 22456777777777775 4443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=98.94  E-value=1.3e-10  Score=103.23  Aligned_cols=220  Identities=15%  Similarity=0.057  Sum_probs=113.8

Q ss_pred             HHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHH
Q 017279           95 NLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDH  174 (374)
Q Consensus        95 ~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~  174 (374)
                      .....+...+++|+.|+++  .+.+.......+ ..+++|++|+++++. ++...  . ...+++|++|+++++ .++..
T Consensus        24 ~~~~~~~~~~~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~Ls~n~-l~~~~--~-~~~l~~L~~L~Ls~n-~l~~l   95 (317)
T 3o53_A           24 QALASLRQSAWNVKELDLS--GNPLSQISAADL-APFTKLELLNLSSNV-LYETL--D-LESLSTLRTLDLNNN-YVQEL   95 (317)
T ss_dssp             HHHHHHHTTGGGCSEEECT--TSCCCCCCHHHH-TTCTTCCEEECTTSC-CEEEE--E-ETTCTTCCEEECCSS-EEEEE
T ss_pred             hhHHHHhccCCCCCEEECc--CCccCcCCHHHh-hCCCcCCEEECCCCc-CCcch--h-hhhcCCCCEEECcCC-ccccc
Confidence            3455666677899999999  455554333333 458999999999973 33211  1 345789999999875 33321


Q ss_pred             HHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHH
Q 017279          175 ALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS  254 (374)
Q Consensus       175 ~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~  254 (374)
                            ...++|++|+++++.  +....    ...+++|+.|+++++. ++.... .....+++|+.|++++| .++...
T Consensus        96 ------~~~~~L~~L~l~~n~--l~~~~----~~~~~~L~~L~l~~N~-l~~~~~-~~~~~l~~L~~L~Ls~N-~l~~~~  160 (317)
T 3o53_A           96 ------LVGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANNK-ITMLRD-LDEGCRSRVQYLDLKLN-EIDTVN  160 (317)
T ss_dssp             ------EECTTCCEEECCSSC--CSEEE----ECCCSSCEEEECCSSC-CCSGGG-BCTGGGSSEEEEECTTS-CCCEEE
T ss_pred             ------cCCCCcCEEECCCCc--cCCcC----ccccCCCCEEECCCCC-CCCccc-hhhhccCCCCEEECCCC-CCCccc
Confidence                  124677777777643  22111    1135566666666543 332110 11123566666666663 343322


Q ss_pred             HHHHHhcCCCCceEecCCCCCCCHHHHHHHHhc-CCCCCCcccc----ccccccCCCCCcEEecCCCCCCCHHHHHHHHh
Q 017279          255 VIALANGCPHLRSLGLYYCRNITDRAIYSLAQS-GVKNKPGIWE----SMKGRYDEEGLQSLNISQCTALTPPAVQALCD  329 (374)
Q Consensus       255 l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~-~~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~  329 (374)
                      ...+...+++|+.|+++++. ++..  ...... ..+......+    ....+..+++|++|+++++ .++.     +  
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~-l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~~~~l~~L~~L~L~~N-~l~~-----l--  229 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNF-IYDV--KGQVVFAKLKTLDLSSNKLAFMGPEFQSAAGVTWISLRNN-KLVL-----I--  229 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSC-CCEE--ECCCCCTTCCEEECCSSCCCEECGGGGGGTTCSEEECTTS-CCCE-----E--
T ss_pred             HHHHhhccCcCCEEECCCCc-Cccc--ccccccccCCEEECCCCcCCcchhhhcccCcccEEECcCC-cccc-----h--
Confidence            22333345666666666654 3321  000000 0000000000    0111345577777777773 4542     0  


Q ss_pred             hCCCccCCCCCceEEecCCc
Q 017279          330 TFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       330 ~~~~l~~~~~L~~L~ls~C~  349 (374)
                       -+.+..+++|+.|++++++
T Consensus       230 -~~~~~~l~~L~~L~l~~N~  248 (317)
T 3o53_A          230 -EKALRFSQNLEHFDLRGNG  248 (317)
T ss_dssp             -CTTCCCCTTCCEEECTTCC
T ss_pred             -hhHhhcCCCCCEEEccCCC
Confidence             1124566777777777775

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.93  E-value=4.6e-10  Score=106.74  Aligned_cols=175  Identities=18%  Similarity=0.192  Sum_probs=103.5

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNC  210 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~  210 (374)
                      .+|+.|+++++. +....+   ...+++|++|+++++ .+..... .....+++|++|+++++.  +.. ..+......+
T Consensus       302 ~~L~~L~l~~n~-l~~~~~---~~~l~~L~~L~Ls~n-~l~~~~~-~~~~~l~~L~~L~L~~N~--l~~l~~~~~~~~~l  373 (520)
T 2z7x_B          302 MNIKNFTVSGTR-MVHMLC---PSKISPFLHLDFSNN-LLTDTVF-ENCGHLTELETLILQMNQ--LKELSKIAEMTTQM  373 (520)
T ss_dssp             CCCSEEEEESSC-CCCCCC---CSSCCCCCEEECCSS-CCCTTTT-TTCCCCSSCCEEECCSSC--CCBHHHHHHHHTTC
T ss_pred             CceeEEEcCCCc-cccccc---hhhCCcccEEEeECC-ccChhhh-hhhccCCCCCEEEccCCc--cCccccchHHHhhC
Confidence            467777777753 221110   134678888888774 3433111 122457788888888755  333 2344445567


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGV  289 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~  289 (374)
                      ++|+.|+++++. +.+.........+++|++|++++| .++....    ... ++|+.|++++|. ++.  +        
T Consensus       374 ~~L~~L~Ls~N~-l~~~l~~~~~~~l~~L~~L~Ls~N-~l~~~~~----~~l~~~L~~L~Ls~N~-l~~--i--------  436 (520)
T 2z7x_B          374 KSLQQLDISQNS-VSYDEKKGDCSWTKSLLSLNMSSN-ILTDTIF----RCLPPRIKVLDLHSNK-IKS--I--------  436 (520)
T ss_dssp             TTCCEEECCSSC-CBCCGGGCSCCCCTTCCEEECCSS-CCCGGGG----GSCCTTCCEEECCSSC-CCC--C--------
T ss_pred             CCCCEEECCCCc-CCcccccchhccCccCCEEECcCC-CCCcchh----hhhcccCCEEECCCCc-ccc--c--------
Confidence            888888887754 332111112234678888888884 4543221    122 578888888774 441  0        


Q ss_pred             CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC--CccCCCCCceEEecCCcc
Q 017279          290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP--ALHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~--~l~~~~~L~~L~ls~C~~  350 (374)
                               +..+..+++|++|+++++ .++.         +|  .+..+++|+.|++++++-
T Consensus       437 ---------p~~~~~l~~L~~L~L~~N-~l~~---------l~~~~~~~l~~L~~L~l~~N~~  480 (520)
T 2z7x_B          437 ---------PKQVVKLEALQELNVASN-QLKS---------VPDGIFDRLTSLQKIWLHTNPW  480 (520)
T ss_dssp             ---------CGGGGGCTTCCEEECCSS-CCCC---------CCTTTTTTCTTCCEEECCSSCB
T ss_pred             ---------chhhhcCCCCCEEECCCC-cCCc---------cCHHHhccCCcccEEECcCCCC
Confidence                     111234689999999984 5652         22  246789999999999873

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.93  E-value=3e-10  Score=93.46  Aligned_cols=149  Identities=21%  Similarity=0.231  Sum_probs=77.8

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|++|+++++ .+.+  ++ ....+++|++|+++++.  +...  . ....+++|++|+++++. +++..... ...++
T Consensus        44 ~~L~~L~l~~n-~i~~--l~-~l~~l~~L~~L~l~~n~--~~~~--~-~l~~l~~L~~L~l~~n~-l~~~~~~~-l~~l~  112 (197)
T 4ezg_A           44 NSLTYITLANI-NVTD--LT-GIEYAHNIKDLTINNIH--ATNY--N-PISGLSNLERLRIMGKD-VTSDKIPN-LSGLT  112 (197)
T ss_dssp             HTCCEEEEESS-CCSC--CT-TGGGCTTCSEEEEESCC--CSCC--G-GGTTCTTCCEEEEECTT-CBGGGSCC-CTTCT
T ss_pred             CCccEEeccCC-CccC--hH-HHhcCCCCCEEEccCCC--CCcc--h-hhhcCCCCCEEEeECCc-cCcccChh-hcCCC
Confidence            45555555542 2321  11 12345566666666542  2111  1 12346666666666543 33322221 23467


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +|+.|++++| .+++.....+. .+++|+.|++++|..+++.  ..                  +..+++|++|++++| 
T Consensus       113 ~L~~L~Ls~n-~i~~~~~~~l~-~l~~L~~L~L~~n~~i~~~--~~------------------l~~l~~L~~L~l~~n-  169 (197)
T 4ezg_A          113 SLTLLDISHS-AHDDSILTKIN-TLPKVNSIDLSYNGAITDI--MP------------------LKTLPELKSLNIQFD-  169 (197)
T ss_dssp             TCCEEECCSS-BCBGGGHHHHT-TCSSCCEEECCSCTBCCCC--GG------------------GGGCSSCCEEECTTB-
T ss_pred             CCCEEEecCC-ccCcHhHHHHh-hCCCCCEEEccCCCCcccc--Hh------------------hcCCCCCCEEECCCC-
Confidence            7777777774 45543343333 4777777777776533331  11                  223477888888774 


Q ss_pred             CCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      .+++         ++.+..+++|+.|++++++
T Consensus       170 ~i~~---------~~~l~~l~~L~~L~l~~N~  192 (197)
T 4ezg_A          170 GVHD---------YRGIEDFPKLNQLYAFSQT  192 (197)
T ss_dssp             CCCC---------CTTGGGCSSCCEEEECBC-
T ss_pred             CCcC---------hHHhccCCCCCEEEeeCcc
Confidence            4553         2334667788888887764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.92  E-value=1.1e-11  Score=120.76  Aligned_cols=180  Identities=10%  Similarity=0.048  Sum_probs=103.9

Q ss_pred             ccCceeecccccccch---------------HHHHHHhh--cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCC
Q 017279           79 LGLTHLSLSWCKNNMN---------------NLVLSLAP--KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSK  141 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~---------------~~~~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~  141 (374)
                      ..+++|+++++.....               ..++....  .+++|++|+++  .+.+.......+ ..+++|++|++++
T Consensus       206 ~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~--~n~l~~~~p~~l-~~l~~L~~L~Ls~  282 (636)
T 4eco_A          206 TKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVY--NCPNLTKLPTFL-KALPEMQLINVAC  282 (636)
T ss_dssp             TTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEE--CCTTCSSCCTTT-TTCSSCCEEECTT
T ss_pred             cCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEec--CCcCCccChHHH-hcCCCCCEEECcC
Confidence            4588899887764431               01233334  78899999999  333332222222 3478999999999


Q ss_pred             CCCCCH-HHHHHHHh-----cCCCCcEEeecCCCCCCHHHHHH--HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCC
Q 017279          142 SFKLSD-RSLYALAH-----GCPNLTRLNISGCTSFSDHALAY--LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQL  213 (374)
Q Consensus       142 ~~~~~~-~~~~~l~~-----~~~~L~~L~L~~~~~~~~~~~~~--l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L  213 (374)
                      +..++. .....+..     .+++|++|+++++ .+.  .++.  ....+++|++|+++++.  +.+. +. ....+++|
T Consensus       283 n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n-~l~--~ip~~~~l~~l~~L~~L~L~~N~--l~g~-ip-~~~~l~~L  355 (636)
T 4eco_A          283 NRGISGEQLKDDWQALADAPVGEKIQIIYIGYN-NLK--TFPVETSLQKMKKLGMLECLYNQ--LEGK-LP-AFGSEIKL  355 (636)
T ss_dssp             CTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSS-CCS--SCCCHHHHTTCTTCCEEECCSCC--CEEE-CC-CCEEEEEE
T ss_pred             CCCCccccchHHHHhhhccccCCCCCEEECCCC-cCC--ccCchhhhccCCCCCEEeCcCCc--Cccc-hh-hhCCCCCC
Confidence            753665 43333432     2489999999875 444  2333  45568899999998754  3311 11 23356777


Q ss_pred             CEEeccCCCCCCHHHHHHHHhcCCC-CCeeecCCCCCCCHHHHHHHHhc--CCCCceEecCCCC
Q 017279          214 QSLNLGWCEDVGDVGVMNLAYGCPD-LRSLDLCGCVCITDDSVIALANG--CPHLRSLGLYYCR  274 (374)
Q Consensus       214 ~~L~l~~~~~~~~~~~~~l~~~~~~-L~~L~l~~~~~l~~~~l~~l~~~--~~~L~~L~l~~~~  274 (374)
                      +.|+++++. +.  .+......+++ |+.|+++++ .++  .+......  +++|+.|+++++.
T Consensus       356 ~~L~L~~N~-l~--~lp~~l~~l~~~L~~L~Ls~N-~l~--~lp~~~~~~~l~~L~~L~Ls~N~  413 (636)
T 4eco_A          356 ASLNLAYNQ-IT--EIPANFCGFTEQVENLSFAHN-KLK--YIPNIFDAKSVSVMSAIDFSYNE  413 (636)
T ss_dssp             SEEECCSSE-EE--ECCTTSEEECTTCCEEECCSS-CCS--SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CEEECCCCc-cc--cccHhhhhhcccCcEEEccCC-cCc--ccchhhhhcccCccCEEECcCCc
Confidence            888877643 22  11111334566 777777774 343  11111111  2367777777664

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=98.92  E-value=3.7e-10  Score=107.40  Aligned_cols=102  Identities=19%  Similarity=0.095  Sum_probs=51.7

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++|+++++....  ..+..+..+++|++|+++  .+.+..-...    .+++|++|+++++. ++...+......++
T Consensus        45 ~~L~~L~Ls~n~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~lp~~----~l~~L~~L~L~~N~-l~~~~~p~~~~~l~  115 (520)
T 2z7x_B           45 SKLRILIISHNRIQY--LDISVFKFNQELEYLDLS--HNKLVKISCH----PTVNLKHLDLSFNA-FDALPICKEFGNMS  115 (520)
T ss_dssp             TTCCEEECCSSCCCE--EEGGGGTTCTTCCEEECC--SSCCCEEECC----CCCCCSEEECCSSC-CSSCCCCGGGGGCT
T ss_pred             ccccEEecCCCccCC--cChHHhhcccCCCEEecC--CCceeecCcc----ccCCccEEeccCCc-cccccchhhhccCC
Confidence            346777776654321  112234466777777777  3344321111    36677777777752 22211111123367


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCC--cEEEcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKL--KILNLCGC  194 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L--~~L~L~~~  194 (374)
                      +|++|+++++ .+....    ...+++|  ++|+++++
T Consensus       116 ~L~~L~L~~n-~l~~~~----~~~l~~L~L~~L~l~~n  148 (520)
T 2z7x_B          116 QLKFLGLSTT-HLEKSS----VLPIAHLNISKVLLVLG  148 (520)
T ss_dssp             TCCEEEEEES-SCCGGG----GGGGTTSCEEEEEEEEC
T ss_pred             cceEEEecCc-ccchhh----ccccccceeeEEEeecc
Confidence            7777777763 444322    2235556  77777654

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=98.91  E-value=2.3e-11  Score=108.78  Aligned_cols=221  Identities=17%  Similarity=0.139  Sum_probs=129.9

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  183 (374)
                      .++++.|+++  .+.++......+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .+...  +  ....
T Consensus        51 ~~~l~~L~L~--~n~i~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~Ls~n-~l~~l--~--~~~~  120 (330)
T 1xku_A           51 PPDTALLDLQ--NNKITEIKDGDF-KNLKNLHTLILINN-KISKISPGAF-APLVKLERLYLSKN-QLKEL--P--EKMP  120 (330)
T ss_dssp             CTTCCEEECC--SSCCCCBCTTTT-TTCTTCCEEECCSS-CCCCBCTTTT-TTCTTCCEEECCSS-CCSBC--C--SSCC
T ss_pred             CCCCeEEECC--CCcCCEeChhhh-ccCCCCCEEECCCC-cCCeeCHHHh-cCCCCCCEEECCCC-cCCcc--C--hhhc
Confidence            3689999998  444543222222 34899999999986 3432211222 34799999999984 44321  1  1124


Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHH-HHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVG-VMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~-~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      ++|++|+++++.  +.... ......+++|+.|+++++. +...+ .......+++|+.|+++++ .++.  +..  ...
T Consensus       121 ~~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~~~l~~L~~L~l~~n-~l~~--l~~--~~~  191 (330)
T 1xku_A          121 KTLQELRVHENE--ITKVR-KSVFNGLNQMIVVELGTNP-LKSSGIENGAFQGMKKLSYIRIADT-NITT--IPQ--GLP  191 (330)
T ss_dssp             TTCCEEECCSSC--CCBBC-HHHHTTCTTCCEEECCSSC-CCGGGBCTTGGGGCTTCCEEECCSS-CCCS--CCS--SCC
T ss_pred             ccccEEECCCCc--ccccC-HhHhcCCccccEEECCCCc-CCccCcChhhccCCCCcCEEECCCC-cccc--CCc--ccc
Confidence            799999999865  33222 2334568999999999864 33211 1223356789999999885 3431  100  013


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcccc-----ccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-Ccc
Q 017279          263 PHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGIWE-----SMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALH  335 (374)
Q Consensus       263 ~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~~~-----~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~  335 (374)
                      ++|+.|+++++. ++......+.... ++......+     ....+..+++|++|+++++ .++         .+| .+.
T Consensus       192 ~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N-~l~---------~lp~~l~  260 (330)
T 1xku_A          192 PSLTELHLDGNK-ITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNN-KLV---------KVPGGLA  260 (330)
T ss_dssp             TTCSEEECTTSC-CCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSS-CCS---------SCCTTTT
T ss_pred             ccCCEEECCCCc-CCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCC-cCc---------cCChhhc
Confidence            678888888774 4432111121110 000001111     1123567789999999884 555         233 356


Q ss_pred             CCCCCceEEecCCccccccc
Q 017279          336 TCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       336 ~~~~L~~L~ls~C~~l~~~~  355 (374)
                      .+++|+.|++++|. ++...
T Consensus       261 ~l~~L~~L~l~~N~-i~~~~  279 (330)
T 1xku_A          261 DHKYIQVVYLHNNN-ISAIG  279 (330)
T ss_dssp             TCSSCCEEECCSSC-CCCCC
T ss_pred             cCCCcCEEECCCCc-CCccC
Confidence            78999999999984 66554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=98.91  E-value=2.9e-10  Score=106.13  Aligned_cols=159  Identities=17%  Similarity=0.073  Sum_probs=80.8

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++++......     ...+++|+.|+++  .+.++...    ...+++|++|+++++ .++..   . ...+++
T Consensus        86 ~L~~L~Ls~N~l~~~~-----~~~l~~L~~L~L~--~N~l~~l~----~~~l~~L~~L~l~~N-~l~~l---~-l~~l~~  149 (457)
T 3bz5_A           86 NLTYLACDSNKLTNLD-----VTPLTKLTYLNCD--TNKLTKLD----VSQNPLLTYLNCARN-TLTEI---D-VSHNTQ  149 (457)
T ss_dssp             TCSEEECCSSCCSCCC-----CTTCTTCCEEECC--SSCCSCCC----CTTCTTCCEEECTTS-CCSCC---C-CTTCTT
T ss_pred             CCCEEECcCCCCceee-----cCCCCcCCEEECC--CCcCCeec----CCCCCcCCEEECCCC-cccee---c-cccCCc
Confidence            3556666554432211     3355666666666  23333211    133556666666654 22221   1 223566


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++..+....    ...+++|++|+++++.  +..-  .  ...+++|+.|+++++. ++...    ...+++|
T Consensus       150 L~~L~l~~n~~~~~~~----~~~l~~L~~L~ls~n~--l~~l--~--l~~l~~L~~L~l~~N~-l~~~~----l~~l~~L  214 (457)
T 3bz5_A          150 LTELDCHLNKKITKLD----VTPQTQLTTLDCSFNK--ITEL--D--VSQNKLLNRLNCDTNN-ITKLD----LNQNIQL  214 (457)
T ss_dssp             CCEEECTTCSCCCCCC----CTTCTTCCEEECCSSC--CCCC--C--CTTCTTCCEEECCSSC-CSCCC----CTTCTTC
T ss_pred             CCEEECCCCCcccccc----cccCCcCCEEECCCCc--ccee--c--cccCCCCCEEECcCCc-CCeec----cccCCCC
Confidence            6666666543332211    2245667777776643  2221  1  3356677777776643 33321    3356777


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +.|+++++ .++.  +.  ...+++|+.|+++++.
T Consensus       215 ~~L~Ls~N-~l~~--ip--~~~l~~L~~L~l~~N~  244 (457)
T 3bz5_A          215 TFLDCSSN-KLTE--ID--VTPLTQLTYFDCSVNP  244 (457)
T ss_dssp             SEEECCSS-CCSC--CC--CTTCTTCSEEECCSSC
T ss_pred             CEEECcCC-cccc--cC--ccccCCCCEEEeeCCc
Confidence            77777774 3443  22  2346777777777764

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=98.90  E-value=1.1e-11  Score=120.60  Aligned_cols=228  Identities=17%  Similarity=0.150  Sum_probs=132.1

Q ss_pred             HhhcCCCCcEEEeeCCCCCCChH-----------------HHHHHH-HhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCc
Q 017279          100 LAPKLTKLQTLVLRQDKPQLEDN-----------------AVEAIA-NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLT  161 (374)
Q Consensus       100 ~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~l~-~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  161 (374)
                      .+..+++|+.|+++  .+.++..                 ....+. ..+++|++|+++++.... .....+ ..+++|+
T Consensus       201 ~l~~l~~L~~L~Ls--~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~-~~p~~l-~~l~~L~  276 (636)
T 4eco_A          201 AVMRLTKLRQFYMG--NSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLT-KLPTFL-KALPEMQ  276 (636)
T ss_dssp             GGGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCS-SCCTTT-TTCSSCC
T ss_pred             HHhcccCCCEEECc--CCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCc-cChHHH-hcCCCCC
Confidence            35578899999999  4456552                 222221 157899999999874322 111222 3478999


Q ss_pred             EEeecCCCCCCHHHHHHHHhc------CCCCcEEEcCCCccCccHHHHHH--HHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279          162 RLNISGCTSFSDHALAYLCGF------CRKLKILNLCGCVKAATDYALQA--IGRNCNQLQSLNLGWCEDVGDVGVMNLA  233 (374)
Q Consensus       162 ~L~L~~~~~~~~~~~~~l~~~------~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~l~  233 (374)
                      +|+++++..++...++.....      +++|++|+++++.  +.  .+..  ....+++|+.|+++++. +.+. +. ..
T Consensus       277 ~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~--l~--~ip~~~~l~~l~~L~~L~L~~N~-l~g~-ip-~~  349 (636)
T 4eco_A          277 LINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNN--LK--TFPVETSLQKMKKLGMLECLYNQ-LEGK-LP-AF  349 (636)
T ss_dssp             EEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSC--CS--SCCCHHHHTTCTTCCEEECCSCC-CEEE-CC-CC
T ss_pred             EEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCc--CC--ccCchhhhccCCCCCEEeCcCCc-Cccc-hh-hh
Confidence            999998643665233333333      4899999999865  33  3333  45568899999998864 3311 11 23


Q ss_pred             hcCCCCCeeecCCCCCCCHHHHHHHHhcCCC-CceEecCCCCCCCHHHHHHHHhcC---CCCCCcccccc-----cccc-
Q 017279          234 YGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCRNITDRAIYSLAQSG---VKNKPGIWESM-----KGRY-  303 (374)
Q Consensus       234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~i~~~~~~~l~~~~---~~~~~~~~~~~-----~~~~-  303 (374)
                      ..+++|+.|++++| .++  .+..-...+++ |+.|+++++. ++. ....+....   .+......+..     ..+. 
T Consensus       350 ~~l~~L~~L~L~~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-l~~-lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~  424 (636)
T 4eco_A          350 GSEIKLASLNLAYN-QIT--EIPANFCGFTEQVENLSFAHNK-LKY-IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDP  424 (636)
T ss_dssp             EEEEEESEEECCSS-EEE--ECCTTSEEECTTCCEEECCSSC-CSS-CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCT
T ss_pred             CCCCCCCEEECCCC-ccc--cccHhhhhhcccCcEEEccCCc-Ccc-cchhhhhcccCccCEEECcCCcCCCcchhhhcc
Confidence            45688999999985 444  22112334777 9999999885 442 000000000   00000011111     1233 


Q ss_pred             ------CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279          304 ------DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT  352 (374)
Q Consensus       304 ------~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~  352 (374)
                            .+++|+.|+++++ .++.. ...+      ...+++|+.|++++|. ++
T Consensus       425 ~~~~~~~~~~L~~L~Ls~N-~l~~l-p~~~------~~~l~~L~~L~Ls~N~-l~  470 (636)
T 4eco_A          425 LDPTPFKGINVSSINLSNN-QISKF-PKEL------FSTGSPLSSINLMGNM-LT  470 (636)
T ss_dssp             TCSSCCCCCCEEEEECCSS-CCCSC-CTHH------HHTTCCCSEEECCSSC-CS
T ss_pred             cccccccCCCCCEEECcCC-ccCcC-CHHH------HccCCCCCEEECCCCC-CC
Confidence                  5668888888884 55521 1111      1357888999999885 54

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=98.88  E-value=3.7e-11  Score=119.86  Aligned_cols=163  Identities=18%  Similarity=0.125  Sum_probs=107.3

Q ss_pred             HHhhcCCCCcEEEeeCCCCCCChH-----------------HHHHH-HHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           99 SLAPKLTKLQTLVLRQDKPQLEDN-----------------AVEAI-ANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~-----------------~~~~l-~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      ..+..+++|+.|+++  .+.++..                 ....+ ...+++|++|+++++.... .....+ ..+++|
T Consensus       442 ~~l~~L~~L~~L~Ls--~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~-~iP~~l-~~L~~L  517 (876)
T 4ecn_A          442 KAIQRLTKLQIIYFA--NSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT-QLPDFL-YDLPEL  517 (876)
T ss_dssp             GGGGGCTTCCEEEEE--SCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC-SCCGGG-GGCSSC
T ss_pred             HHHhcCCCCCEEECc--CCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc-cChHHH-hCCCCC
Confidence            346688999999999  5556651                 22222 1258899999999874332 212223 458999


Q ss_pred             cEEeecCCCCCCHHHHHHHH-------hcCCCCcEEEcCCCccCccHHHHHH--HHhcCCCCCEEeccCCCCCCHHHHHH
Q 017279          161 TRLNISGCTSFSDHALAYLC-------GFCRKLKILNLCGCVKAATDYALQA--IGRNCNQLQSLNLGWCEDVGDVGVMN  231 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~-------~~~~~L~~L~L~~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~~~~~~~~~  231 (374)
                      +.|+++++..++...++.-.       ..+++|++|+++++.  +.  .++.  ....+++|+.|+++++. +..  +. 
T Consensus       518 ~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~--L~--~ip~~~~l~~L~~L~~L~Ls~N~-l~~--lp-  589 (876)
T 4ecn_A          518 QSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNN--LE--EFPASASLQKMVKLGLLDCVHNK-VRH--LE-  589 (876)
T ss_dssp             CEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSC--CC--BCCCHHHHTTCTTCCEEECTTSC-CCB--CC-
T ss_pred             CEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCc--CC--ccCChhhhhcCCCCCEEECCCCC-ccc--ch-
Confidence            99999986436652233222       245699999999865  33  3333  45578999999999864 442  22 


Q ss_pred             HHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC-CceEecCCCCCCC
Q 017279          232 LAYGCPDLRSLDLCGCVCITDDSVIALANGCPH-LRSLGLYYCRNIT  277 (374)
Q Consensus       232 l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~-L~~L~l~~~~~i~  277 (374)
                      ....+++|+.|++++| .++  .+..-...+++ |+.|+++++. ++
T Consensus       590 ~~~~L~~L~~L~Ls~N-~l~--~lp~~l~~l~~~L~~L~Ls~N~-L~  632 (876)
T 4ecn_A          590 AFGTNVKLTDLKLDYN-QIE--EIPEDFCAFTDQVEGLGFSHNK-LK  632 (876)
T ss_dssp             CCCTTSEESEEECCSS-CCS--CCCTTSCEECTTCCEEECCSSC-CC
T ss_pred             hhcCCCcceEEECcCC-ccc--cchHHHhhccccCCEEECcCCC-CC
Confidence            3456789999999995 454  22222334777 9999999885 44

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.88  E-value=1.6e-09  Score=104.24  Aligned_cols=145  Identities=23%  Similarity=0.225  Sum_probs=62.5

Q ss_pred             cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (374)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  182 (374)
                      .+++|+.|+++  .+.+...  ..+ ..+++|+.|+|+++. +....  . ...+++|+.|+|+++ .+..  ++ ....
T Consensus        41 ~L~~L~~L~l~--~n~i~~l--~~l-~~l~~L~~L~Ls~N~-l~~~~--~-l~~l~~L~~L~Ls~N-~l~~--l~-~l~~  107 (605)
T 1m9s_A           41 ELNSIDQIIAN--NSDIKSV--QGI-QYLPNVTKLFLNGNK-LTDIK--P-LTNLKNLGWLFLDEN-KIKD--LS-SLKD  107 (605)
T ss_dssp             HHTTCCCCBCT--TCCCCCC--TTG-GGCTTCCEEECTTSC-CCCCG--G-GGGCTTCCEEECCSS-CCCC--CT-TSTT
T ss_pred             cCCCCCEEECc--CCCCCCC--hHH-ccCCCCCEEEeeCCC-CCCCh--h-hccCCCCCEEECcCC-CCCC--Ch-hhcc
Confidence            34556666666  2223221  111 335666666666652 22211  1 233566666666653 2222  11 1233


Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      +++|++|+|+++.  +..  +.. ...+++|+.|+|+++. +.+.   .....+++|+.|++++| .++....   ...+
T Consensus       108 l~~L~~L~Ls~N~--l~~--l~~-l~~l~~L~~L~Ls~N~-l~~l---~~l~~l~~L~~L~Ls~N-~l~~~~~---l~~l  174 (605)
T 1m9s_A          108 LKKLKSLSLEHNG--ISD--ING-LVHLPQLESLYLGNNK-ITDI---TVLSRLTKLDTLSLEDN-QISDIVP---LAGL  174 (605)
T ss_dssp             CTTCCEEECTTSC--CCC--CGG-GGGCTTCSEEECCSSC-CCCC---GGGGSCTTCSEEECCSS-CCCCCGG---GTTC
T ss_pred             CCCCCEEEecCCC--CCC--Ccc-ccCCCccCEEECCCCc-cCCc---hhhcccCCCCEEECcCC-cCCCchh---hccC
Confidence            5556666665543  221  111 2245555555555532 2221   12234455555555553 2321111   2234


Q ss_pred             CCCceEecCCC
Q 017279          263 PHLRSLGLYYC  273 (374)
Q Consensus       263 ~~L~~L~l~~~  273 (374)
                      ++|+.|+|++|
T Consensus       175 ~~L~~L~Ls~N  185 (605)
T 1m9s_A          175 TKLQNLYLSKN  185 (605)
T ss_dssp             TTCCEEECCSS
T ss_pred             CCCCEEECcCC
Confidence            55555555554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.87  E-value=2.4e-11  Score=119.43  Aligned_cols=42  Identities=17%  Similarity=0.084  Sum_probs=27.4

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~  350 (374)
                      +..+++|+.|++++ +.++......+.      ..+++|+.|++++++-
T Consensus       580 ~~~l~~L~~L~L~~-N~l~~~~~~~~~------~~~~~L~~l~l~~N~~  621 (680)
T 1ziw_A          580 FNNQVSLKSLNLQK-NLITSVEKKVFG------PAFRNLTELDMRFNPF  621 (680)
T ss_dssp             TTTCTTCCEEECTT-SCCCBCCHHHHH------HHHTTCSEEECTTCCC
T ss_pred             hCCCCCCCEEECCC-CcCCccChhHhc------ccccccCEEEccCCCc
Confidence            34668899999988 456543222221      1357889999998764

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=98.86  E-value=1.3e-10  Score=114.34  Aligned_cols=40  Identities=10%  Similarity=-0.091  Sum_probs=22.5

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      +..+++|++|+++++ .++...       -..+..+++|+.|++++|.
T Consensus       268 ~~~l~~L~~L~L~~n-~l~~~~-------~~~~~~l~~L~~L~L~~~~  307 (680)
T 1ziw_A          268 FAWLPQLEYFFLEYN-NIQHLF-------SHSLHGLFNVRYLNLKRSF  307 (680)
T ss_dssp             TTTCTTCCEEECCSC-CBSEEC-------TTTTTTCTTCCEEECTTCB
T ss_pred             ccCcccccEeeCCCC-ccCccC-------hhhhcCCCCccEEeccchh
Confidence            556667777777663 333210       0124566777777777653

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.85  E-value=2.1e-11  Score=106.08  Aligned_cols=203  Identities=18%  Similarity=0.135  Sum_probs=99.1

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++ .++......+ ..+++|++|+++++ .+..... .....++
T Consensus        28 ~~l~~L~ls--~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~  100 (276)
T 2z62_A           28 FSTKNLDLS--FNPLRHLGSYSF-FSFPELQVLDLSRC-EIQTIEDGAY-QSLSHLSTLILTGN-PIQSLAL-GAFSGLS  100 (276)
T ss_dssp             TTCCEEECT--TCCCCEECTTTT-TTCTTCSEEECTTC-CCCEECTTTT-TTCTTCCEEECTTC-CCCEECT-TTTTTCT
T ss_pred             CCccEEECC--CCcccccCHhHh-ccccCCcEEECCCC-cCCccCHHHc-cCCcCCCEEECCCC-ccCccCh-hhhcCCc
Confidence            356677776  333332211111 23567777777765 2322111111 23567777777763 3322111 1123467


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCH---HHHHHHHhc
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITD---DSVIALANG  261 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~---~~l~~l~~~  261 (374)
                      +|++|+++++.  +.... ......+++|++|+++++. +....+......+++|++|++++| .++.   ..+..+. .
T Consensus       101 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~~l~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~-~  174 (276)
T 2z62_A          101 SLQKLVAVETN--LASLE-NFPIGHLKTLKELNVAHNL-IQSFKLPEYFSNLTNLEHLDLSSN-KIQSIYCTDLRVLH-Q  174 (276)
T ss_dssp             TCCEEECTTSC--CCCST-TCCCTTCTTCCEEECCSSC-CCCCCCCGGGGGCTTCCEEECCSS-CCCEECGGGGHHHH-T
T ss_pred             cccEEECCCCC--ccccC-chhcccCCCCCEEECcCCc-cceecCchhhccCCCCCEEECCCC-CCCcCCHHHhhhhh-h
Confidence            77777776643  21110 0013346777777777643 332111223345677777777774 3332   2233222 2


Q ss_pred             CCCCc-eEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCC
Q 017279          262 CPHLR-SLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR  340 (374)
Q Consensus       262 ~~~L~-~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L  340 (374)
                      ++.|. .|+++++. ++...                   .+.....+|++|+++++ .++....       ..+..+++|
T Consensus       175 L~~l~l~L~ls~n~-l~~~~-------------------~~~~~~~~L~~L~L~~n-~l~~~~~-------~~~~~l~~L  226 (276)
T 2z62_A          175 MPLLNLSLDLSLNP-MNFIQ-------------------PGAFKEIRLKELALDTN-QLKSVPD-------GIFDRLTSL  226 (276)
T ss_dssp             CTTCCEEEECCSSC-CCEEC-------------------TTSSCSCCEEEEECCSS-CCSCCCT-------TTTTTCCSC
T ss_pred             ccccceeeecCCCc-ccccC-------------------ccccCCCcccEEECCCC-ceeecCH-------hHhcccccc
Confidence            33333 67776664 33200                   01112347888888874 4552110       123567888


Q ss_pred             ceEEecCC
Q 017279          341 HSLVMSGC  348 (374)
Q Consensus       341 ~~L~ls~C  348 (374)
                      +.|+++++
T Consensus       227 ~~L~l~~N  234 (276)
T 2z62_A          227 QKIWLHTN  234 (276)
T ss_dssp             CEEECCSS
T ss_pred             cEEEccCC
Confidence            88888844

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.85  E-value=2.4e-07  Score=75.07  Aligned_cols=126  Identities=18%  Similarity=0.218  Sum_probs=72.5

Q ss_pred             HHHHHhcCCCCcEEeecCCCCCCHHHHHHHH---hcCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCCC
Q 017279          150 LYALAHGCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCED  223 (374)
Q Consensus       150 ~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~~  223 (374)
                      +..+...+++|++|+|+++..+.+.++..+.   ...++|++|+|+++.  +.+.....+   ....++|++|+++++ .
T Consensus        28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~--i~~~g~~~l~~~L~~n~~L~~L~L~~N-~  104 (185)
T 1io0_A           28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVESN-F  104 (185)
T ss_dssp             HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCSS-C
T ss_pred             HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCC--CChHHHHHHHHHHHhCCCcCEEECcCC-c
Confidence            4444444566666666653355555544332   234567777776644  555544333   234566777777764 3


Q ss_pred             CCHHHHHHHHh---cCCCCCeeec--CCCCCCCHHHHHHHHh---cCCCCceEecCCCCCCCHHH
Q 017279          224 VGDVGVMNLAY---GCPDLRSLDL--CGCVCITDDSVIALAN---GCPHLRSLGLYYCRNITDRA  280 (374)
Q Consensus       224 ~~~~~~~~l~~---~~~~L~~L~l--~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~i~~~~  280 (374)
                      +++.+...+..   ..++|++|++  ++ +.+++++...+.+   ..+.|++|+++++. +.+.+
T Consensus       105 i~~~g~~~l~~~L~~n~~L~~L~L~~~~-N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~-i~~~~  167 (185)
T 1io0_A          105 ISGSGILALVEALQSNTSLIELRIDNQS-QPLGNNVEMEIANMLEKNTTLLKFGYHFTQ-QGPRL  167 (185)
T ss_dssp             CCHHHHHHHHHGGGGCSSCCEEECCCCS-SCCCHHHHHHHHHHHHHCSSCCEEECCCSS-HHHHH
T ss_pred             CCHHHHHHHHHHHHhCCCceEEEecCCC-CCCCHHHHHHHHHHHHhCCCcCEEeccCCC-CChHH
Confidence            66666555543   3467777777  55 4677766544433   35678888877774 65554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=98.85  E-value=1.7e-10  Score=108.59  Aligned_cols=201  Identities=17%  Similarity=0.127  Sum_probs=133.4

Q ss_pred             HHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHH
Q 017279           99 SLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAY  178 (374)
Q Consensus        99 ~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~  178 (374)
                      .+...+++|+.|+++  .+.+.......+ ..+++|++|+++++. ++....   ...+++|++|+++++ .++..    
T Consensus        28 ~l~~~~~~L~~L~Ls--~n~l~~~~~~~~-~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~L~~L~Ls~N-~l~~l----   95 (487)
T 3oja_A           28 SLRQSAWNVKELDLS--GNPLSQISAADL-APFTKLELLNLSSNV-LYETLD---LESLSTLRTLDLNNN-YVQEL----   95 (487)
T ss_dssp             TTSTTGGGCCEEECC--SSCCCCCCGGGG-TTCTTCCEEECTTSC-CEEEEE---CTTCTTCCEEECCSS-EEEEE----
T ss_pred             HhcccCCCccEEEee--CCcCCCCCHHHH-hCCCCCCEEEeeCCC-CCCCcc---cccCCCCCEEEecCC-cCCCC----
Confidence            344455689999999  445544322222 458999999999973 332111   345899999999985 44321    


Q ss_pred             HHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH
Q 017279          179 LCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL  258 (374)
Q Consensus       179 l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l  258 (374)
                        ...++|++|+++++.  +....    ...+++|+.|+++++. ++... ......+++|+.|++++| .++......+
T Consensus        96 --~~~~~L~~L~L~~N~--l~~~~----~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~~l  164 (487)
T 3oja_A           96 --LVGPSIETLHAANNN--ISRVS----CSRGQGKKNIYLANNK-ITMLR-DLDEGCRSRVQYLDLKLN-EIDTVNFAEL  164 (487)
T ss_dssp             --EECTTCCEEECCSSC--CCCEE----ECCCSSCEEEECCSSC-CCSGG-GBCGGGGSSEEEEECTTS-CCCEEEGGGG
T ss_pred             --CCCCCcCEEECcCCc--CCCCC----ccccCCCCEEECCCCC-CCCCC-chhhcCCCCCCEEECCCC-CCCCcChHHH
Confidence              135899999999865  33221    1246899999999864 44321 112245799999999995 5654334445


Q ss_pred             HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCC
Q 017279          259 ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCS  338 (374)
Q Consensus       259 ~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~  338 (374)
                      ...+++|+.|++++|. ++..                    .+...+++|+.|++++ +.++.        .-+.+..++
T Consensus       165 ~~~l~~L~~L~Ls~N~-l~~~--------------------~~~~~l~~L~~L~Ls~-N~l~~--------~~~~~~~l~  214 (487)
T 3oja_A          165 AASSDTLEHLNLQYNF-IYDV--------------------KGQVVFAKLKTLDLSS-NKLAF--------MGPEFQSAA  214 (487)
T ss_dssp             GGGTTTCCEEECTTSC-CCEE--------------------ECCCCCTTCCEEECCS-SCCCE--------ECGGGGGGT
T ss_pred             hhhCCcccEEecCCCc-cccc--------------------cccccCCCCCEEECCC-CCCCC--------CCHhHcCCC
Confidence            4458999999999986 5431                    1112468999999999 46763        112356789


Q ss_pred             CCceEEecCCccccc
Q 017279          339 GRHSLVMSGCLNLTS  353 (374)
Q Consensus       339 ~L~~L~ls~C~~l~~  353 (374)
                      +|+.|++++|. ++.
T Consensus       215 ~L~~L~Ls~N~-l~~  228 (487)
T 3oja_A          215 GVTWISLRNNK-LVL  228 (487)
T ss_dssp             TCSEEECTTSC-CCE
T ss_pred             CccEEEecCCc-Ccc
Confidence            99999999985 553

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.84  E-value=6.7e-11  Score=105.80  Aligned_cols=45  Identities=13%  Similarity=0.056  Sum_probs=21.9

Q ss_pred             cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ..+++|++|++++ +.++......+.. .......++|+.|++++++
T Consensus       261 ~~l~~L~~L~l~~-N~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~N~  305 (332)
T 2ft3_A          261 PDLKLLQVVYLHT-NNITKVGVNDFCP-VGFGVKRAYYNGISLFNNP  305 (332)
T ss_dssp             GGCTTCCEEECCS-SCCCBCCTTSSSC-SSCCSSSCCBSEEECCSSS
T ss_pred             hcCccCCEEECCC-CCCCccChhHccc-cccccccccccceEeecCc
Confidence            3456777777776 3454322221110 0001124566777777765

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.82  E-value=9.2e-10  Score=95.47  Aligned_cols=194  Identities=18%  Similarity=0.156  Sum_probs=111.9

Q ss_pred             cCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279          103 KLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (374)
Q Consensus       103 ~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  182 (374)
                      .+++++.|.+.  ...+...  ..+ ..+++|++|+++++. +..  +..+ ..+++|++|+++++ .+.... ......
T Consensus        39 ~l~~L~~L~l~--~~~i~~~--~~l-~~l~~L~~L~l~~n~-l~~--~~~l-~~l~~L~~L~L~~n-~l~~~~-~~~~~~  107 (272)
T 3rfs_A           39 ELNSIDQIIAN--NSDIKSV--QGI-QYLPNVRYLALGGNK-LHD--ISAL-KELTNLTYLILTGN-QLQSLP-NGVFDK  107 (272)
T ss_dssp             HHTTCCEEECT--TSCCCCC--TTG-GGCTTCCEEECTTSC-CCC--CGGG-TTCTTCCEEECTTS-CCCCCC-TTTTTT
T ss_pred             cccceeeeeeC--CCCcccc--ccc-ccCCCCcEEECCCCC-CCC--chhh-cCCCCCCEEECCCC-ccCccC-hhHhcC
Confidence            45788888888  3333321  112 347888999988863 333  1222 34788888888874 343211 112345


Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      +++|++|+++++.  +... .......+++|++|+++++. ++... ......+++|+.|++++| .++... ......+
T Consensus       108 l~~L~~L~L~~n~--l~~~-~~~~~~~l~~L~~L~L~~n~-l~~~~-~~~~~~l~~L~~L~l~~n-~l~~~~-~~~~~~l  180 (272)
T 3rfs_A          108 LTNLKELVLVENQ--LQSL-PDGVFDKLTNLTYLNLAHNQ-LQSLP-KGVFDKLTNLTELDLSYN-QLQSLP-EGVFDKL  180 (272)
T ss_dssp             CTTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred             CcCCCEEECCCCc--CCcc-CHHHhccCCCCCEEECCCCc-cCccC-HHHhccCccCCEEECCCC-CcCccC-HHHhcCC
Confidence            7888888888754  3211 11223457888888888753 33211 122345788888888885 444211 1222347


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCce
Q 017279          263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS  342 (374)
Q Consensus       263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~  342 (374)
                      ++|+.|++++|. ++.....                  .+..+++|+.|+++++ .+.              ..||+|+.
T Consensus       181 ~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~l~~N-~~~--------------~~~~~l~~  226 (272)
T 3rfs_A          181 TQLKDLRLYQNQ-LKSVPDG------------------VFDRLTSLQYIWLHDN-PWD--------------CTCPGIRY  226 (272)
T ss_dssp             TTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEEECCSS-CBC--------------CCTTTTHH
T ss_pred             ccCCEEECCCCc-CCccCHH------------------HHhCCcCCCEEEccCC-Ccc--------------ccCcHHHH
Confidence            888888888774 4321110                  1234578888888874 232              45777777


Q ss_pred             EEecCC
Q 017279          343 LVMSGC  348 (374)
Q Consensus       343 L~ls~C  348 (374)
                      |+++++
T Consensus       227 l~~~~n  232 (272)
T 3rfs_A          227 LSEWIN  232 (272)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766654

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=98.80  E-value=1.2e-09  Score=89.91  Aligned_cols=142  Identities=18%  Similarity=0.153  Sum_probs=99.9

Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      .+++|++|+++++.  +..  +.. ...+++|++|+++++. +.+.  . ....+++|++|++++| .++......+. .
T Consensus        42 ~l~~L~~L~l~~n~--i~~--l~~-l~~l~~L~~L~l~~n~-~~~~--~-~l~~l~~L~~L~l~~n-~l~~~~~~~l~-~  110 (197)
T 4ezg_A           42 QMNSLTYITLANIN--VTD--LTG-IEYAHNIKDLTINNIH-ATNY--N-PISGLSNLERLRIMGK-DVTSDKIPNLS-G  110 (197)
T ss_dssp             HHHTCCEEEEESSC--CSC--CTT-GGGCTTCSEEEEESCC-CSCC--G-GGTTCTTCCEEEEECT-TCBGGGSCCCT-T
T ss_pred             hcCCccEEeccCCC--ccC--hHH-HhcCCCCCEEEccCCC-CCcc--h-hhhcCCCCCEEEeECC-ccCcccChhhc-C
Confidence            36789999999865  332  122 4568999999999873 4432  2 2446899999999995 56543343343 4


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH  341 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~  341 (374)
                      +++|+.|++++|. +++.....+..                  +++|++|++++|..+++         ++.+..+++|+
T Consensus       111 l~~L~~L~Ls~n~-i~~~~~~~l~~------------------l~~L~~L~L~~n~~i~~---------~~~l~~l~~L~  162 (197)
T 4ezg_A          111 LTSLTLLDISHSA-HDDSILTKINT------------------LPKVNSIDLSYNGAITD---------IMPLKTLPELK  162 (197)
T ss_dssp             CTTCCEEECCSSB-CBGGGHHHHTT------------------CSSCCEEECCSCTBCCC---------CGGGGGCSSCC
T ss_pred             CCCCCEEEecCCc-cCcHhHHHHhh------------------CCCCCEEEccCCCCccc---------cHhhcCCCCCC
Confidence            8999999999985 77655555554                  38999999999653653         34457889999


Q ss_pred             eEEecCCcccccccceecCccc
Q 017279          342 SLVMSGCLNLTSVHCVCAGQSH  363 (374)
Q Consensus       342 ~L~ls~C~~l~~~~~~~~~~~~  363 (374)
                      .|++++|. +++......+.++
T Consensus       163 ~L~l~~n~-i~~~~~l~~l~~L  183 (197)
T 4ezg_A          163 SLNIQFDG-VHDYRGIEDFPKL  183 (197)
T ss_dssp             EEECTTBC-CCCCTTGGGCSSC
T ss_pred             EEECCCCC-CcChHHhccCCCC
Confidence            99999995 6665433333333

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=98.78  E-value=1.4e-10  Score=100.66  Aligned_cols=14  Identities=0%  Similarity=-0.026  Sum_probs=6.9

Q ss_pred             cCCCCCceEEecCC
Q 017279          335 HTCSGRHSLVMSGC  348 (374)
Q Consensus       335 ~~~~~L~~L~ls~C  348 (374)
                      ..+++|+.|++++|
T Consensus       202 ~~l~~L~~L~l~~N  215 (272)
T 3rfs_A          202 DRLTSLQYIWLHDN  215 (272)
T ss_dssp             TTCTTCCEEECCSS
T ss_pred             hCCcCCCEEEccCC
Confidence            34455555555544

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.78  E-value=2.6e-11  Score=121.96  Aligned_cols=14  Identities=0%  Similarity=-0.240  Sum_probs=8.7

Q ss_pred             cCCCCCceEEecCC
Q 017279          335 HTCSGRHSLVMSGC  348 (374)
Q Consensus       335 ~~~~~L~~L~ls~C  348 (374)
                      ..+++|+.|++++|
T Consensus       335 ~~l~~L~~L~L~~N  348 (844)
T 3j0a_A          335 YGLPKVAYIDLQKN  348 (844)
T ss_dssp             SSCTTCCEEECCSC
T ss_pred             cCCCCCCEEECCCC
Confidence            45566666666665

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=98.77  E-value=5.2e-09  Score=65.80  Aligned_cols=41  Identities=34%  Similarity=0.595  Sum_probs=35.0

Q ss_pred             cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      ....|..||+|++.+||+||+..++.++++|||+|+.++..
T Consensus         5 ~~~~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~   45 (53)
T 1fs1_A            5 PGVSWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD   45 (53)
T ss_dssp             ----CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred             CCCCHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            35689999999999999999999999999999999988753

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=98.76  E-value=1.4e-11  Score=118.56  Aligned_cols=185  Identities=19%  Similarity=0.107  Sum_probs=91.8

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHH-HHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHA-LAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      +++|++|++.++........    ..+++|++|+++++ .+.... .......+++|++|+++++.  +..... . ...
T Consensus       324 l~~L~~L~l~~n~~~~~~~~----~~~~~L~~L~l~~n-~l~~~~~~~~~~~~~~~L~~L~l~~n~--l~~~~~-~-~~~  394 (570)
T 2z63_A          324 LKSLKRLTFTSNKGGNAFSE----VDLPSLEFLDLSRN-GLSFKGCCSQSDFGTTSLKYLDLSFNG--VITMSS-N-FLG  394 (570)
T ss_dssp             CSSCCEEEEESCBSCCBCCC----CBCTTCCEEECCSS-CCBEEEEEEHHHHTCSCCCEEECCSCS--EEEEEE-E-EET
T ss_pred             ccccCEEeCcCCcccccccc----ccCCCCCEEeCcCC-ccCccccccccccccCccCEEECCCCc--cccccc-c-ccc
Confidence            45566666655422111000    23566666666653 222110 01112245666666666543  111100 0 234


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV  289 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~  289 (374)
                      +++|++|+++++. +...........+++|+.|++++|. ++... ......+++|+.|++++|. +++.          
T Consensus       395 l~~L~~L~l~~n~-l~~~~~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~n~-l~~~----------  460 (570)
T 2z63_A          395 LEQLEHLDFQHSN-LKQMSEFSVFLSLRNLIYLDISHTH-TRVAF-NGIFNGLSSLEVLKMAGNS-FQEN----------  460 (570)
T ss_dssp             CTTCCEEECTTSE-EESCTTSCTTTTCTTCCEEECTTSC-CEECC-TTTTTTCTTCCEEECTTCE-EGGG----------
T ss_pred             cCCCCEEEccCCc-cccccchhhhhcCCCCCEEeCcCCc-ccccc-hhhhhcCCcCcEEECcCCc-Cccc----------
Confidence            5666666666542 2111011122345667777776643 22111 1122246667777776664 2210          


Q ss_pred             CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccc
Q 017279          290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~  354 (374)
                             ..+..+..+++|++|++++| .++...       -..+..+++|+.|++++| +++..
T Consensus       461 -------~~p~~~~~l~~L~~L~l~~n-~l~~~~-------~~~~~~l~~L~~L~l~~n-~l~~~  509 (570)
T 2z63_A          461 -------FLPDIFTELRNLTFLDLSQC-QLEQLS-------PTAFNSLSSLQVLNMASN-QLKSV  509 (570)
T ss_dssp             -------EECSCCTTCTTCCEEECTTS-CCCEEC-------TTTTTTCTTCCEEECCSS-CCSCC
T ss_pred             -------cchhhhhcccCCCEEECCCC-ccccCC-------hhhhhcccCCCEEeCCCC-cCCCC
Confidence                   01123556799999999985 555311       113567899999999999 46554

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.76  E-value=4.2e-10  Score=97.50  Aligned_cols=155  Identities=17%  Similarity=0.134  Sum_probs=67.1

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++ .++.. ...+...+++|++|+++++ .+..... .....++
T Consensus        37 ~~l~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~l~~n-~l~~i-~~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~  109 (270)
T 2o6q_A           37 ADTKKLDLQ--SNKLSSLPSKAF-HRLTKLRLLYLNDN-KLQTL-PAGIFKELKNLETLWVTDN-KLQALPI-GVFDQLV  109 (270)
T ss_dssp             TTCSEEECC--SSCCSCCCTTSS-SSCTTCCEEECCSS-CCSCC-CTTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCS
T ss_pred             CCCCEEECc--CCCCCeeCHHHh-cCCCCCCEEECCCC-ccCee-ChhhhcCCCCCCEEECCCC-cCCcCCH-hHccccc
Confidence            467777777  333332111111 23567777777665 22211 0111223566777776653 2221110 1123456


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|+++++.  +.... ...+..+++|++|+++++. ++... ......+++|+.|+++++ .++.... .....+++
T Consensus       110 ~L~~L~l~~n~--l~~~~-~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l~~L~~L~L~~n-~l~~~~~-~~~~~l~~  182 (270)
T 2o6q_A          110 NLAELRLDRNQ--LKSLP-PRVFDSLTKLTYLSLGYNE-LQSLP-KGVFDKLTSLKELRLYNN-QLKRVPE-GAFDKLTE  182 (270)
T ss_dssp             SCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTT
T ss_pred             CCCEEECCCCc--cCeeC-HHHhCcCcCCCEEECCCCc-CCccC-HhHccCCcccceeEecCC-cCcEeCh-hHhccCCC
Confidence            66666666533  21111 1112345666666665542 22111 111234556666666653 2321111 11123455


Q ss_pred             CceEecCCC
Q 017279          265 LRSLGLYYC  273 (374)
Q Consensus       265 L~~L~l~~~  273 (374)
                      |+.|+++++
T Consensus       183 L~~L~L~~N  191 (270)
T 2o6q_A          183 LKTLKLDNN  191 (270)
T ss_dssp             CCEEECCSS
T ss_pred             cCEEECCCC
Confidence            666666555

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=98.75  E-value=1.1e-08  Score=90.44  Aligned_cols=224  Identities=18%  Similarity=0.123  Sum_probs=136.3

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHH--hCCCCCEEecCCCCCCCHHHHHHHH-hcCCCCcEEeecCCCCCCH----HHH
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIAN--SCHDLQDLDLSKSFKLSDRSLYALA-HGCPNLTRLNISGCTSFSD----HAL  176 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~--~~~~L~~L~l~~~~~~~~~~~~~l~-~~~~~L~~L~L~~~~~~~~----~~~  176 (374)
                      ...++.+.+.  ...+++..+..+..  ..++|++|+++++. +.......+. ..+++|++|+++++ .+..    ...
T Consensus        63 ~~~l~~l~l~--~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~-l~~~~~~~~~~~~~~~L~~L~Ls~n-~i~~~~~~~~~  138 (310)
T 4glp_A           63 ALRVRRLTVG--AAQVPAQLLVGALRVLAYSRLKELTLEDLK-ITGTMPPLPLEATGLALSSLRLRNV-SWATGRSWLAE  138 (310)
T ss_dssp             SCCCCEEEEC--SCCCBHHHHHHHHHHHHHSCCCEEEEESCC-CBSCCCCCSSSCCCBCCSSCEEESC-CCSSTTSSHHH
T ss_pred             hcceeEEEEe--CCcCCHHHHHHHHHhcccCceeEEEeeCCE-eccchhhhhhhccCCCCCEEEeecc-cccchhhhhHH
Confidence            3457888888  55666655544332  24679999999873 3322222221 44789999999985 4432    111


Q ss_pred             HHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHH--HHhcCCCCCeeecCCCCCCC--H
Q 017279          177 AYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMN--LAYGCPDLRSLDLCGCVCIT--D  252 (374)
Q Consensus       177 ~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~--l~~~~~~L~~L~l~~~~~l~--~  252 (374)
                      .. ...+++|++|+++++.  +.... ......+++|++|+++++.-.....+..  ....+++|++|++++| .++  +
T Consensus       139 ~~-~~~~~~L~~L~Ls~n~--l~~~~-~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~l~  213 (310)
T 4glp_A          139 LQ-QWLKPGLKVLSIAQAH--SPAFS-CEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNT-GMETPT  213 (310)
T ss_dssp             HH-TTBCSCCCEEEEECCS--SCCCC-TTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSS-CCCCHH
T ss_pred             HH-hhhccCCCEEEeeCCC--cchhh-HHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCC-CCCchH
Confidence            22 2368999999999865  32211 1223468999999999865332222221  1246899999999996 565  2


Q ss_pred             HHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC
Q 017279          253 DSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP  332 (374)
Q Consensus       253 ~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  332 (374)
                      .....+...+++|++|+++++. +++.....+.               .+..+++|++|++++ +.++.         +|
T Consensus       214 ~~~~~l~~~l~~L~~L~Ls~N~-l~~~~p~~~~---------------~~~~~~~L~~L~Ls~-N~l~~---------lp  267 (310)
T 4glp_A          214 GVCAALAAAGVQPHSLDLSHNS-LRATVNPSAP---------------RCMWSSALNSLNLSF-AGLEQ---------VP  267 (310)
T ss_dssp             HHHHHHHHHTCCCSSEECTTSC-CCCCCCSCCS---------------SCCCCTTCCCEECCS-SCCCS---------CC
T ss_pred             HHHHHHHhcCCCCCEEECCCCC-CCccchhhHH---------------hccCcCcCCEEECCC-CCCCc---------hh
Confidence            3333445568999999999985 4431100000               011237999999998 46662         23


Q ss_pred             CccCCCCCceEEecCCcccccccceecCcccc
Q 017279          333 ALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHR  364 (374)
Q Consensus       333 ~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~  364 (374)
                      .- -+++|+.|++++|. ++.......+.+++
T Consensus       268 ~~-~~~~L~~L~Ls~N~-l~~~~~~~~l~~L~  297 (310)
T 4glp_A          268 KG-LPAKLRVLDLSSNR-LNRAPQPDELPEVD  297 (310)
T ss_dssp             SC-CCSCCSCEECCSCC-CCSCCCTTSCCCCS
T ss_pred             hh-hcCCCCEEECCCCc-CCCCchhhhCCCcc
Confidence            21 14899999999995 66543333333333

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=98.73  E-value=3.8e-11  Score=107.42  Aligned_cols=224  Identities=18%  Similarity=0.094  Sum_probs=111.1

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++++....  .....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++.  +..  ...++
T Consensus        55 ~l~~L~l~~n~i~~--~~~~~~~~l~~L~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~--l~~--~~~~~  124 (332)
T 2ft3_A           55 DTTLLDLQNNDISE--LRKDDFKGLQHLYALVLV--NNKISKIHEKAF-SPLRKLQKLYISKN-HLVE--IPP--NLPSS  124 (332)
T ss_dssp             TCCEEECCSSCCCE--ECTTTTTTCTTCCEEECC--SSCCCEECGGGS-TTCTTCCEEECCSS-CCCS--CCS--SCCTT
T ss_pred             CCeEEECCCCcCCc--cCHhHhhCCCCCcEEECC--CCccCccCHhHh-hCcCCCCEEECCCC-cCCc--cCc--ccccc
Confidence            36677776654321  112234567778888887  344443222222 33677888888775 2221  000  11257


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHH-HHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYAL-QAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~-~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      |++|+++++ .+.... ......+++|++|+++++.  +..... ......+ +|+.|+++++. ++.  +..  ...++
T Consensus       125 L~~L~l~~n-~i~~~~-~~~~~~l~~L~~L~l~~n~--l~~~~~~~~~~~~l-~L~~L~l~~n~-l~~--l~~--~~~~~  194 (332)
T 2ft3_A          125 LVELRIHDN-RIRKVP-KGVFSGLRNMNCIEMGGNP--LENSGFEPGAFDGL-KLNYLRISEAK-LTG--IPK--DLPET  194 (332)
T ss_dssp             CCEEECCSS-CCCCCC-SGGGSSCSSCCEEECCSCC--CBGGGSCTTSSCSC-CCSCCBCCSSB-CSS--CCS--SSCSS
T ss_pred             CCEEECCCC-ccCccC-HhHhCCCccCCEEECCCCc--cccCCCCcccccCC-ccCEEECcCCC-CCc--cCc--cccCC
Confidence            788887764 333211 1123457778888877644  322111 1111222 67777776643 222  000  11256


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA  318 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (374)
                      |++|+++++ .++......+ ..+++|+.|+++++. ++.....                  .+..+++|++|+++++ .
T Consensus       195 L~~L~l~~n-~i~~~~~~~l-~~l~~L~~L~L~~N~-l~~~~~~------------------~~~~l~~L~~L~L~~N-~  252 (332)
T 2ft3_A          195 LNELHLDHN-KIQAIELEDL-LRYSKLYRLGLGHNQ-IRMIENG------------------SLSFLPTLRELHLDNN-K  252 (332)
T ss_dssp             CSCCBCCSS-CCCCCCTTSS-TTCTTCSCCBCCSSC-CCCCCTT------------------GGGGCTTCCEEECCSS-C
T ss_pred             CCEEECCCC-cCCccCHHHh-cCCCCCCEEECCCCc-CCcCChh------------------HhhCCCCCCEEECCCC-c
Confidence            777777774 3332211112 236677777777664 3321111                  1223467777777763 4


Q ss_pred             CCHHHHHHHHhhCC-CccCCCCCceEEecCCccccccc
Q 017279          319 LTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       319 l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                      ++         .+| .+..+++|+.|+++++. ++...
T Consensus       253 l~---------~lp~~l~~l~~L~~L~l~~N~-l~~~~  280 (332)
T 2ft3_A          253 LS---------RVPAGLPDLKLLQVVYLHTNN-ITKVG  280 (332)
T ss_dssp             CC---------BCCTTGGGCTTCCEEECCSSC-CCBCC
T ss_pred             Ce---------ecChhhhcCccCCEEECCCCC-CCccC
Confidence            44         122 24566777777777763 55443

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.72  E-value=4.3e-09  Score=82.28  Aligned_cols=130  Identities=24%  Similarity=0.289  Sum_probs=73.1

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      ++|+.|+++++ .+++..+......+++|+.|+++++ .+...   .....+++|++|+++++.  +... +......++
T Consensus        17 ~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~n~--i~~~-~~~~~~~l~   88 (149)
T 2je0_A           17 SDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINV-GLTSI---ANLPKLNKLKKLELSDNR--VSGG-LEVLAEKCP   88 (149)
T ss_dssp             GGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTS-CCCCC---TTCCCCTTCCEEECCSSC--CCSC-THHHHHHCT
T ss_pred             ccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCC-CCCCc---hhhhcCCCCCEEECCCCc--ccch-HHHHhhhCC
Confidence            45666666665 2331111122234677777777764 33332   223456778888887754  3321 344445577


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHH--HHHHhcCCCCceEecC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSV--IALANGCPHLRSLGLY  271 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~L~~L~l~  271 (374)
                      +|++|+++++. +++.........+++|++|++++| .++....  ......+++|+.|+++
T Consensus        89 ~L~~L~ls~N~-i~~~~~~~~~~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           89 NLTHLNLSGNK-IKDLSTIEPLKKLENLKSLDLFNC-EVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             TCCEEECTTSC-CCSHHHHGGGGGCTTCCEEECTTC-GGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCEEECCCCc-CCChHHHHHHhhCCCCCEEeCcCC-cccchHHHHHHHHHHCCCcccccCC
Confidence            88888887754 555332233456788888888885 3432211  1334457888888765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=98.72  E-value=3.1e-09  Score=83.09  Aligned_cols=131  Identities=24%  Similarity=0.244  Sum_probs=89.9

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      .++|+.|+++++ .+.+..++.....+++|++|+++++.  +...   .....+++|+.|+++++. +++. +......+
T Consensus        16 ~~~l~~L~l~~n-~l~~~~~~~~~~~l~~L~~L~l~~n~--l~~~---~~~~~l~~L~~L~Ls~n~-i~~~-~~~~~~~l   87 (149)
T 2je0_A           16 PSDVKELVLDNS-RSNEGKLEGLTDEFEELEFLSTINVG--LTSI---ANLPKLNKLKKLELSDNR-VSGG-LEVLAEKC   87 (149)
T ss_dssp             GGGCSEEECTTC-BCBTTBCCSCCTTCTTCCEEECTTSC--CCCC---TTCCCCTTCCEEECCSSC-CCSC-THHHHHHC
T ss_pred             CccCeEEEccCC-cCChhHHHHHHhhcCCCcEEECcCCC--CCCc---hhhhcCCCCCEEECCCCc-ccch-HHHHhhhC
Confidence            478999999985 44422233344568999999999865  4332   334568999999999865 4432 34445568


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHH---HHHHhcCCCCCCccccccccccCCCCCcEEec
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAI---YSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI  313 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~---~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  313 (374)
                      ++|+.|++++| .++..........+++|+.|++++|. ++....   ..+..                  +++|+.|++
T Consensus        88 ~~L~~L~ls~N-~i~~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~------------------l~~L~~L~l  147 (149)
T 2je0_A           88 PNLTHLNLSGN-KIKDLSTIEPLKKLENLKSLDLFNCE-VTNLNDYRENVFKL------------------LPQLTYLDG  147 (149)
T ss_dssp             TTCCEEECTTS-CCCSHHHHGGGGGCTTCCEEECTTCG-GGGSTTHHHHHHHH------------------CTTCCEETT
T ss_pred             CCCCEEECCCC-cCCChHHHHHHhhCCCCCEEeCcCCc-ccchHHHHHHHHHH------------------CCCcccccC
Confidence            99999999995 56654332334469999999999985 554222   23333                  389999998


Q ss_pred             CC
Q 017279          314 SQ  315 (374)
Q Consensus       314 ~~  315 (374)
                      ++
T Consensus       148 ~d  149 (149)
T 2je0_A          148 YD  149 (149)
T ss_dssp             BC
T ss_pred             CC
Confidence            64

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=98.71  E-value=6e-11  Score=103.22  Aligned_cols=202  Identities=19%  Similarity=0.107  Sum_probs=120.9

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++.+.....  ....+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .++......+ ..+++
T Consensus        29 ~l~~L~ls~n~l~~~--~~~~~~~l~~L~~L~l~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~~~~-~~l~~  101 (276)
T 2z62_A           29 STKNLDLSFNPLRHL--GSYSFFSFPELQVLDLS--RCEIQTIEDGAY-QSLSHLSTLILTGN-PIQSLALGAF-SGLSS  101 (276)
T ss_dssp             TCCEEECTTCCCCEE--CTTTTTTCTTCSEEECT--TCCCCEECTTTT-TTCTTCCEEECTTC-CCCEECTTTT-TTCTT
T ss_pred             CccEEECCCCccccc--CHhHhccccCCcEEECC--CCcCCccCHHHc-cCCcCCCEEECCCC-ccCccChhhh-cCCcc
Confidence            378888887654321  12234578999999999  445543222122 34789999999987 3332221222 34799


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCH---HHHHHHHhcC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGD---VGVMNLAYGC  236 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~---~~~~~l~~~~  236 (374)
                      |++|+++++ .+...... ....+++|++|+++++.  +....+......+++|++|+++++. ++.   ..+..+ ..+
T Consensus       102 L~~L~l~~n-~l~~~~~~-~~~~l~~L~~L~l~~n~--l~~~~l~~~~~~l~~L~~L~Ls~N~-l~~~~~~~~~~l-~~L  175 (276)
T 2z62_A          102 LQKLVAVET-NLASLENF-PIGHLKTLKELNVAHNL--IQSFKLPEYFSNLTNLEHLDLSSNK-IQSIYCTDLRVL-HQM  175 (276)
T ss_dssp             CCEEECTTS-CCCCSTTC-CCTTCTTCCEEECCSSC--CCCCCCCGGGGGCTTCCEEECCSSC-CCEECGGGGHHH-HTC
T ss_pred             ccEEECCCC-CccccCch-hcccCCCCCEEECcCCc--cceecCchhhccCCCCCEEECCCCC-CCcCCHHHhhhh-hhc
Confidence            999999875 33221110 13468999999999855  3332223344568999999999864 433   222222 234


Q ss_pred             CCCC-eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279          237 PDLR-SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ  315 (374)
Q Consensus       237 ~~L~-~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  315 (374)
                      +.|. .|+++++ .++.... ... ...+|+.|+++++. ++.....                  .+..+++|+.|++++
T Consensus       176 ~~l~l~L~ls~n-~l~~~~~-~~~-~~~~L~~L~L~~n~-l~~~~~~------------------~~~~l~~L~~L~l~~  233 (276)
T 2z62_A          176 PLLNLSLDLSLN-PMNFIQP-GAF-KEIRLKELALDTNQ-LKSVPDG------------------IFDRLTSLQKIWLHT  233 (276)
T ss_dssp             TTCCEEEECCSS-CCCEECT-TSS-CSCCEEEEECCSSC-CSCCCTT------------------TTTTCCSCCEEECCS
T ss_pred             cccceeeecCCC-cccccCc-ccc-CCCcccEEECCCCc-eeecCHh------------------HhcccccccEEEccC
Confidence            4444 8999985 4542111 111 24589999999885 5421111                  123568999999998


Q ss_pred             C
Q 017279          316 C  316 (374)
Q Consensus       316 ~  316 (374)
                      +
T Consensus       234 N  234 (276)
T 2z62_A          234 N  234 (276)
T ss_dssp             S
T ss_pred             C
Confidence            4

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.70  E-value=3.6e-11  Score=102.25  Aligned_cols=204  Identities=16%  Similarity=0.075  Sum_probs=111.9

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.++......+ ..+++|++|+++++..++.-... ....+++|++|++++|..+.... ......++
T Consensus        31 ~~l~~L~l~--~n~l~~i~~~~~-~~l~~L~~L~l~~n~~l~~i~~~-~f~~l~~L~~L~l~~~n~l~~i~-~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLI--ETHLRTIPSHAF-SNLPNISRIYVSIDVTLQQLESH-SFYNLSKVTHIEIRNTRNLTYID-PDALKELP  105 (239)
T ss_dssp             TTCCEEEEE--SCCCSEECTTTT-TTCTTCCEEEEECCSSCCEECTT-TEESCTTCCEEEEEEETTCCEEC-TTSEECCT
T ss_pred             CcccEEEEe--CCcceEECHHHc-cCCCCCcEEeCCCCCCcceeCHh-HcCCCcCCcEEECCCCCCeeEcC-HHHhCCCC
Confidence            367788887  444433211111 34678888888876323221111 12347788888887633443211 11223578


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCC---EEeccCCCCCCHHHHHHHHhcCCCCC-eeecCCCCCCCHHHHHHHHh
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQ---SLNLGWCEDVGDVGVMNLAYGCPDLR-SLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~~~~~~~~~l~~~~~~L~-~L~l~~~~~l~~~~l~~l~~  260 (374)
                      +|++|+++++.  +..  +.. +..+++|+   .|+++++..++.... .....+++|+ .|+++++ .++... .....
T Consensus       106 ~L~~L~l~~n~--l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n-~l~~i~-~~~~~  177 (239)
T 2xwt_C          106 LLKFLGIFNTG--LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNN-GFTSVQ-GYAFN  177 (239)
T ss_dssp             TCCEEEEEEEC--CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSC-CCCEEC-TTTTT
T ss_pred             CCCEEeCCCCC--Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCC-CCcccC-HhhcC
Confidence            88888887754  222  222 34567777   888887523433111 1223578888 9999884 444111 11222


Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCC-CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCC
Q 017279          261 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDE-EGLQSLNISQCTALTPPAVQALCDTFPALHTCSG  339 (374)
Q Consensus       261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~  339 (374)
                       .++|+.|+++++..++....                  ..+..+ ++|+.|++++ +.++.         +|.- .+++
T Consensus       178 -~~~L~~L~L~~n~~l~~i~~------------------~~~~~l~~~L~~L~l~~-N~l~~---------l~~~-~~~~  227 (239)
T 2xwt_C          178 -GTKLDAVYLNKNKYLTVIDK------------------DAFGGVYSGPSLLDVSQ-TSVTA---------LPSK-GLEH  227 (239)
T ss_dssp             -TCEEEEEECTTCTTCCEECT------------------TTTTTCSBCCSEEECTT-CCCCC---------CCCT-TCTT
T ss_pred             -CCCCCEEEcCCCCCcccCCH------------------HHhhccccCCcEEECCC-Ccccc---------CChh-Hhcc
Confidence             36788888888743432100                  112345 7899999988 45552         2322 5788


Q ss_pred             CceEEecCCccc
Q 017279          340 RHSLVMSGCLNL  351 (374)
Q Consensus       340 L~~L~ls~C~~l  351 (374)
                      |+.|++++++++
T Consensus       228 L~~L~l~~~~~l  239 (239)
T 2xwt_C          228 LKELIARNTWTL  239 (239)
T ss_dssp             CSEEECTTC---
T ss_pred             CceeeccCccCC
Confidence            899999888753

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.69  E-value=5.2e-10  Score=97.94  Aligned_cols=152  Identities=22%  Similarity=0.212  Sum_probs=60.9

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++ .++....  . ..+++|++|+++++ .+..  ++.....++
T Consensus        31 ~~l~~L~L~--~N~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~--~-~~l~~L~~L~Ls~N-~l~~--l~~~~~~l~  100 (290)
T 1p9a_G           31 KDTTILHLS--ENLLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV--D-GTLPVLGTLDLSHN-QLQS--LPLLGQTLP  100 (290)
T ss_dssp             TTCCEEECT--TSCCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC--C-SCCTTCCEEECCSS-CCSS--CCCCTTTCT
T ss_pred             CCCCEEEcC--CCcCCccCHHHh-hcCCCCCEEECCCC-ccCcccC--C-CCCCcCCEEECCCC-cCCc--CchhhccCC
Confidence            456666665  333332211111 23556666666654 2221100  0 23556666666553 2221  111223355


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|+++++.  +.... ...+..+++|++|+++++. ++... ......+++|+.|+++++ .++... ......+++
T Consensus       101 ~L~~L~l~~N~--l~~l~-~~~~~~l~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l~~  173 (290)
T 1p9a_G          101 ALTVLDVSFNR--LTSLP-LGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKLSLANN-NLTELP-AGLLNGLEN  173 (290)
T ss_dssp             TCCEEECCSSC--CCCCC-SSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS-CCSCCC-TTTTTTCTT
T ss_pred             CCCEEECCCCc--CcccC-HHHHcCCCCCCEEECCCCC-CCccC-hhhcccccCCCEEECCCC-cCCccC-HHHhcCcCC
Confidence            55666655532  21100 0112234555555555432 22110 111223455555555553 232100 111223455


Q ss_pred             CceEecCCC
Q 017279          265 LRSLGLYYC  273 (374)
Q Consensus       265 L~~L~l~~~  273 (374)
                      |+.|+++++
T Consensus       174 L~~L~L~~N  182 (290)
T 1p9a_G          174 LDTLLLQEN  182 (290)
T ss_dssp             CCEEECCSS
T ss_pred             CCEEECCCC
Confidence            555555554

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.69  E-value=3.6e-09  Score=101.59  Aligned_cols=101  Identities=21%  Similarity=0.118  Sum_probs=47.6

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++++....  .....+..+++|++|+++  .+.+..-...    .+++|++|+++++. ++.-........+++
T Consensus        77 ~L~~L~Ls~N~l~~--~~~~~~~~l~~L~~L~Ls--~N~l~~lp~~----~l~~L~~L~Ls~N~-l~~l~~p~~~~~l~~  147 (562)
T 3a79_B           77 ELRVLRLSHNRIRS--LDFHVFLFNQDLEYLDVS--HNRLQNISCC----PMASLRHLDLSFND-FDVLPVCKEFGNLTK  147 (562)
T ss_dssp             TCCEEECCSCCCCE--ECTTTTTTCTTCCEEECT--TSCCCEECSC----CCTTCSEEECCSSC-CSBCCCCGGGGGCTT
T ss_pred             CccEEECCCCCCCc--CCHHHhCCCCCCCEEECC--CCcCCccCcc----ccccCCEEECCCCC-ccccCchHhhcccCc
Confidence            46666666554321  112233455667777776  3333321111    35667777776652 222111011223567


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCC--cEEEcCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKL--KILNLCGC  194 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L--~~L~L~~~  194 (374)
                      |++|+++++ .+....+.    .+++|  ++|+++++
T Consensus       148 L~~L~L~~n-~l~~~~~~----~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          148 LTFLGLSAA-KFRQLDLL----PVAHLHLSCILLDLV  179 (562)
T ss_dssp             CCEEEEECS-BCCTTTTG----GGTTSCEEEEEEEES
T ss_pred             ccEEecCCC-ccccCchh----hhhhceeeEEEeecc
Confidence            777777663 34332221    23444  66666553

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=98.69  E-value=5.7e-11  Score=119.56  Aligned_cols=110  Identities=22%  Similarity=0.149  Sum_probs=53.7

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHH-HHhcC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYA-LAHGC  157 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~-l~~~~  157 (374)
                      ..++.|+++++.... ......+..+++|+.|+++  .+.+.......+ ..+++|++|+++++ .+.+..+.. ....+
T Consensus        48 ~~L~~LdLs~n~~~~-~i~~~~f~~L~~L~~L~Ls--~N~l~~~~p~~~-~~l~~L~~L~Ls~n-~l~~~~~~~~~~~~L  122 (844)
T 3j0a_A           48 EQLQLLELGSQYTPL-TIDKEAFRNLPNLRILDLG--SSKIYFLHPDAF-QGLFHLFELRLYFC-GLSDAVLKDGYFRNL  122 (844)
T ss_dssp             CSCSEEEECTTCCCC-EECTTTTSSCTTCCEEECT--TCCCCEECTTSS-CSCSSCCCEECTTC-CCSSCCSTTCCCSSC
T ss_pred             ccCeEEeCCCCCCcc-ccCHHHhcCCCCCCEEECC--CCcCcccCHhHc-cCCcccCEeeCcCC-CCCcccccCcccccc
Confidence            346777776653211 1112233566777777777  333432211112 23667777777765 232211111 12236


Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGC  194 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~  194 (374)
                      ++|++|+++++ .+...........+++|++|+++++
T Consensus       123 ~~L~~L~Ls~N-~l~~~~~~~~~~~L~~L~~L~Ls~N  158 (844)
T 3j0a_A          123 KALTRLDLSKN-QIRSLYLHPSFGKLNSLKSIDFSSN  158 (844)
T ss_dssp             SSCCEEEEESC-CCCCCCCCGGGGTCSSCCEEEEESS
T ss_pred             CCCCEEECCCC-cccccccchhHhhCCCCCEEECCCC
Confidence            67777777764 3322211122345677777777664

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=98.68  E-value=3.1e-08  Score=86.60  Aligned_cols=150  Identities=21%  Similarity=0.158  Sum_probs=89.5

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      +++|+.|+++++ .+...  .. ...+++|++|+++++.  +....  . ...+++|+.|+++++. +++  +.. ...+
T Consensus        45 l~~L~~L~l~~~-~i~~~--~~-~~~l~~L~~L~L~~n~--l~~~~--~-l~~l~~L~~L~l~~n~-l~~--~~~-l~~l  111 (291)
T 1h6t_A           45 LNSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNK--LTDIK--P-LANLKNLGWLFLDENK-VKD--LSS-LKDL  111 (291)
T ss_dssp             HHTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSC--CCCCG--G-GTTCTTCCEEECCSSC-CCC--GGG-GTTC
T ss_pred             cCcccEEEccCC-CcccC--hh-HhcCCCCCEEEccCCc--cCCCc--c-cccCCCCCEEECCCCc-CCC--Chh-hccC
Confidence            355666666653 22211  11 2346677777776644  22211  1 3456777777777653 333  112 3457


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                      ++|++|++++| .++.  +..+ ..+++|+.|++++|. +++.  .                  .+..+++|++|+++++
T Consensus       112 ~~L~~L~L~~n-~i~~--~~~l-~~l~~L~~L~l~~n~-l~~~--~------------------~l~~l~~L~~L~L~~N  166 (291)
T 1h6t_A          112 KKLKSLSLEHN-GISD--INGL-VHLPQLESLYLGNNK-ITDI--T------------------VLSRLTKLDTLSLEDN  166 (291)
T ss_dssp             TTCCEEECTTS-CCCC--CGGG-GGCTTCCEEECCSSC-CCCC--G------------------GGGGCTTCSEEECCSS
T ss_pred             CCCCEEECCCC-cCCC--Chhh-cCCCCCCEEEccCCc-CCcc--h------------------hhccCCCCCEEEccCC
Confidence            88888888885 3443  1222 347888888888875 4431  1                  1234589999999984


Q ss_pred             CCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                       .+++.         +.+..+++|+.|++++| .++...
T Consensus       167 -~l~~~---------~~l~~l~~L~~L~L~~N-~i~~l~  194 (291)
T 1h6t_A          167 -QISDI---------VPLAGLTKLQNLYLSKN-HISDLR  194 (291)
T ss_dssp             -CCCCC---------GGGTTCTTCCEEECCSS-CCCBCG
T ss_pred             -ccccc---------hhhcCCCccCEEECCCC-cCCCCh
Confidence             56532         12467899999999999 466653

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=98.65  E-value=8.3e-09  Score=99.34  Aligned_cols=166  Identities=22%  Similarity=0.201  Sum_probs=115.4

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..++.|+++.+....-.    -+..+++|+.|+++  .+.+.....   ...+++|+.|+++++ .+..  +..+ ..++
T Consensus        43 ~~L~~L~l~~n~i~~l~----~l~~l~~L~~L~Ls--~N~l~~~~~---l~~l~~L~~L~Ls~N-~l~~--l~~l-~~l~  109 (605)
T 1m9s_A           43 NSIDQIIANNSDIKSVQ----GIQYLPNVTKLFLN--GNKLTDIKP---LTNLKNLGWLFLDEN-KIKD--LSSL-KDLK  109 (605)
T ss_dssp             TTCCCCBCTTCCCCCCT----TGGGCTTCCEEECT--TSCCCCCGG---GGGCTTCCEEECCSS-CCCC--CTTS-TTCT
T ss_pred             CCCCEEECcCCCCCCCh----HHccCCCCCEEEee--CCCCCCChh---hccCCCCCEEECcCC-CCCC--Chhh-ccCC
Confidence            45888888876543221    24678999999999  444443222   346899999999997 3433  2222 4489


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|+.|+|+++ .+..  +. ....+++|+.|+|+++.  +...   .....+++|+.|+|+++. +.+...   ...+++
T Consensus       110 ~L~~L~Ls~N-~l~~--l~-~l~~l~~L~~L~Ls~N~--l~~l---~~l~~l~~L~~L~Ls~N~-l~~~~~---l~~l~~  176 (605)
T 1m9s_A          110 KLKSLSLEHN-GISD--IN-GLVHLPQLESLYLGNNK--ITDI---TVLSRLTKLDTLSLEDNQ-ISDIVP---LAGLTK  176 (605)
T ss_dssp             TCCEEECTTS-CCCC--CG-GGGGCTTCSEEECCSSC--CCCC---GGGGSCTTCSEEECCSSC-CCCCGG---GTTCTT
T ss_pred             CCCEEEecCC-CCCC--Cc-cccCCCccCEEECCCCc--cCCc---hhhcccCCCCEEECcCCc-CCCchh---hccCCC
Confidence            9999999985 4443  22 24568999999999865  3332   334578999999999865 443221   567899


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      |+.|++++| .+++.  ..+ ..+++|+.|++++|.
T Consensus       177 L~~L~Ls~N-~i~~l--~~l-~~l~~L~~L~L~~N~  208 (605)
T 1m9s_A          177 LQNLYLSKN-HISDL--RAL-AGLKNLDVLELFSQE  208 (605)
T ss_dssp             CCEEECCSS-CCCBC--GGG-TTCTTCSEEECCSEE
T ss_pred             CCEEECcCC-CCCCC--hHH-ccCCCCCEEEccCCc
Confidence            999999996 45532  233 358999999999875

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.62  E-value=1e-08  Score=98.96  Aligned_cols=38  Identities=29%  Similarity=0.420  Sum_probs=25.0

Q ss_pred             CCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCceEEecCCccccc
Q 017279          305 EEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTS  353 (374)
Q Consensus       305 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~  353 (374)
                      +++|+.|++++| .++.         +| .+..+++|+.|++++|+ ++.
T Consensus       260 ~~~L~~L~Ls~N-~L~~---------lp~~l~~l~~L~~L~L~~N~-l~~  298 (622)
T 3g06_A          260 PSGLLSLSVYRN-QLTR---------LPESLIHLSSETTVNLEGNP-LSE  298 (622)
T ss_dssp             CTTCCEEECCSS-CCCS---------CCGGGGGSCTTCEEECCSCC-CCH
T ss_pred             cccCcEEeCCCC-CCCc---------CCHHHhhccccCEEEecCCC-CCC
Confidence            467888888874 5551         22 24667888888888885 443

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=98.60  E-value=4.2e-08  Score=94.14  Aligned_cols=175  Identities=17%  Similarity=0.193  Sum_probs=100.6

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNC  210 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~  210 (374)
                      .+|++|+++++..... .   ....+++|++|+++++ .+... .+.....+++|++|+++++.  +.. ..+......+
T Consensus       331 ~~L~~L~l~~n~~~~~-~---~~~~l~~L~~L~l~~n-~l~~~-~~~~~~~l~~L~~L~L~~N~--l~~~~~~~~~~~~l  402 (562)
T 3a79_B          331 MNIKMLSISDTPFIHM-V---CPPSPSSFTFLNFTQN-VFTDS-VFQGCSTLKRLQTLILQRNG--LKNFFKVALMTKNM  402 (562)
T ss_dssp             CCCSEEEEESSCCCCC-C---CCSSCCCCCEEECCSS-CCCTT-TTTTCCSCSSCCEEECCSSC--CCBTTHHHHTTTTC
T ss_pred             CcceEEEccCCCcccc-c---CccCCCCceEEECCCC-ccccc-hhhhhcccCCCCEEECCCCC--cCCcccchhhhcCC
Confidence            4677777776532111 0   0134677888888764 34331 11223457788888887754  332 2333334567


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC-CCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC-PHLRSLGLYYCRNITDRAIYSLAQSGV  289 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~-~~L~~L~l~~~~~i~~~~~~~l~~~~~  289 (374)
                      ++|+.|+++++. ++..........+++|+.|++++| .++...    ...+ ++|+.|+++++. ++.           
T Consensus       403 ~~L~~L~l~~N~-l~~~~~~~~~~~l~~L~~L~l~~n-~l~~~~----~~~l~~~L~~L~L~~N~-l~~-----------  464 (562)
T 3a79_B          403 SSLETLDVSLNS-LNSHAYDRTCAWAESILVLNLSSN-MLTGSV----FRCLPPKVKVLDLHNNR-IMS-----------  464 (562)
T ss_dssp             TTCCEEECTTSC-CBSCCSSCCCCCCTTCCEEECCSS-CCCGGG----GSSCCTTCSEEECCSSC-CCC-----------
T ss_pred             CCCCEEECCCCc-CCCccChhhhcCcccCCEEECCCC-CCCcch----hhhhcCcCCEEECCCCc-Ccc-----------
Confidence            788888887654 222101112334677888888874 454322    1223 578888888774 441           


Q ss_pred             CCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCC--ccCCCCCceEEecCCcc
Q 017279          290 KNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPA--LHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~--l~~~~~L~~L~ls~C~~  350 (374)
                              .+.++..+++|++|++++ +.++.         +|.  +..+++|+.|++++++-
T Consensus       465 --------ip~~~~~l~~L~~L~L~~-N~l~~---------l~~~~~~~l~~L~~L~l~~N~~  509 (562)
T 3a79_B          465 --------IPKDVTHLQALQELNVAS-NQLKS---------VPDGVFDRLTSLQYIWLHDNPW  509 (562)
T ss_dssp             --------CCTTTTSSCCCSEEECCS-SCCCC---------CCTTSTTTCTTCCCEECCSCCB
T ss_pred             --------cChhhcCCCCCCEEECCC-CCCCC---------CCHHHHhcCCCCCEEEecCCCc
Confidence                    011223568999999998 45652         232  56788999999999863

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.56  E-value=3.7e-09  Score=84.47  Aligned_cols=133  Identities=23%  Similarity=0.198  Sum_probs=77.5

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      ++|++|+++++ .+++..+......+++|+.|+++++ .+...   .....+++|++|+++++.  +... +......++
T Consensus        24 ~~L~~L~l~~n-~l~~~~i~~~~~~l~~L~~L~l~~n-~l~~~---~~~~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNC-KSNDGKIEGLTAEFVNLEFLSLINV-GLISV---SNLPKLPKLKKLELSENR--IFGG-LDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSC-BCBTTBCSSCCGGGGGCCEEEEESS-CCCCC---SSCCCCSSCCEEEEESCC--CCSC-CCHHHHHCT
T ss_pred             ccCCEEECCCC-CCChhhHHHHHHhCCCCCEEeCcCC-CCCCh---hhhccCCCCCEEECcCCc--CchH-HHHHHhhCC
Confidence            55677777665 2321112222234677777877764 34332   233457788888887754  3321 334455578


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHH--HHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDS--VIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~--l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|+.|+++++. +++.........+++|+.|++++| .++...  .......+++|+.|++.+|.
T Consensus        96 ~L~~L~Ls~N~-l~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~l~~L~~L~l~~n~  158 (168)
T 2ell_A           96 NLTHLNLSGNK-LKDISTLEPLKKLECLKSLDLFNC-EVTNLNDYRESVFKLLPQLTYLDGYDRE  158 (168)
T ss_dssp             TCCEEECBSSS-CCSSGGGGGGSSCSCCCEEECCSS-GGGTSTTHHHHHHTTCSSCCEETTEETT
T ss_pred             CCCEEeccCCc-cCcchhHHHHhcCCCCCEEEeeCC-cCcchHHHHHHHHHhCccCcEecCCCCC
Confidence            88888888754 444211123346788888888885 343221  12344568889999888775

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=98.55  E-value=2.1e-09  Score=85.90  Aligned_cols=134  Identities=20%  Similarity=0.190  Sum_probs=73.4

Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      ++|++|+++++.  +.+..+......+++|+.|+++++. ++..   .....+++|+.|++++| .++.. +..+...++
T Consensus        24 ~~L~~L~l~~n~--l~~~~i~~~~~~l~~L~~L~l~~n~-l~~~---~~~~~l~~L~~L~Ls~N-~l~~~-~~~~~~~l~   95 (168)
T 2ell_A           24 AAVRELVLDNCK--SNDGKIEGLTAEFVNLEFLSLINVG-LISV---SNLPKLPKLKKLELSEN-RIFGG-LDMLAEKLP   95 (168)
T ss_dssp             TSCSEEECCSCB--CBTTBCSSCCGGGGGCCEEEEESSC-CCCC---SSCCCCSSCCEEEEESC-CCCSC-CCHHHHHCT
T ss_pred             ccCCEEECCCCC--CChhhHHHHHHhCCCCCEEeCcCCC-CCCh---hhhccCCCCCEEECcCC-cCchH-HHHHHhhCC
Confidence            556666666543  2211222223446677777776654 3332   22335677777777774 34321 233344577


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHH--HHHHhhCCCccCCCCCc
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAV--QALCDTFPALHTCSGRH  341 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l--~~l~~~~~~l~~~~~L~  341 (374)
                      +|+.|++++|. +++...                 +..+..+++|++|+++++ .++....  ...      +..+|+|+
T Consensus        96 ~L~~L~Ls~N~-l~~~~~-----------------~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~------~~~l~~L~  150 (168)
T 2ell_A           96 NLTHLNLSGNK-LKDIST-----------------LEPLKKLECLKSLDLFNC-EVTNLNDYRESV------FKLLPQLT  150 (168)
T ss_dssp             TCCEEECBSSS-CCSSGG-----------------GGGGSSCSCCCEEECCSS-GGGTSTTHHHHH------HTTCSSCC
T ss_pred             CCCEEeccCCc-cCcchh-----------------HHHHhcCCCCCEEEeeCC-cCcchHHHHHHH------HHhCccCc
Confidence            88888887774 443110                 011234578888888874 4442211  112      25678888


Q ss_pred             eEEecCCcc
Q 017279          342 SLVMSGCLN  350 (374)
Q Consensus       342 ~L~ls~C~~  350 (374)
                      .|++++|..
T Consensus       151 ~L~l~~n~~  159 (168)
T 2ell_A          151 YLDGYDRED  159 (168)
T ss_dssp             EETTEETTS
T ss_pred             EecCCCCCh
Confidence            998888863

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=98.55  E-value=9.1e-10  Score=95.37  Aligned_cols=179  Identities=18%  Similarity=0.133  Sum_probs=90.5

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++.+....  .....+..+++|+.|+++  .+.+.... ..+...+++|++|+++++ .++.... .....+++
T Consensus        38 ~l~~L~l~~n~l~~--~~~~~~~~l~~L~~L~l~--~n~l~~i~-~~~~~~l~~L~~L~l~~n-~l~~~~~-~~~~~l~~  110 (270)
T 2o6q_A           38 DTKKLDLQSNKLSS--LPSKAFHRLTKLRLLYLN--DNKLQTLP-AGIFKELKNLETLWVTDN-KLQALPI-GVFDQLVN  110 (270)
T ss_dssp             TCSEEECCSSCCSC--CCTTSSSSCTTCCEEECC--SSCCSCCC-TTTTSSCTTCCEEECCSS-CCCCCCT-TTTTTCSS
T ss_pred             CCCEEECcCCCCCe--eCHHHhcCCCCCCEEECC--CCccCeeC-hhhhcCCCCCCEEECCCC-cCCcCCH-hHcccccC
Confidence            36777776654321  112234466778888887  33333211 111233677888888775 2322111 12234677


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++ .+.... ......+++|++|+++++.  +.... ...+..+++|+.|+++++. ++.... .....+++|
T Consensus       111 L~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~Ls~n~--l~~~~-~~~~~~l~~L~~L~L~~n~-l~~~~~-~~~~~l~~L  183 (270)
T 2o6q_A          111 LAELRLDRN-QLKSLP-PRVFDSLTKLTYLSLGYNE--LQSLP-KGVFDKLTSLKELRLYNNQ-LKRVPE-GAFDKLTEL  183 (270)
T ss_dssp             CCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CSCCCT-TTTTTCTTC
T ss_pred             CCEEECCCC-ccCeeC-HHHhCcCcCCCEEECCCCc--CCccC-HhHccCCcccceeEecCCc-CcEeCh-hHhccCCCc
Confidence            888888763 332211 1112356778888887754  22111 1123456778888887653 322111 112346778


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +.|+++++ .++... ......+++|+.|++++++
T Consensus       184 ~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~  216 (270)
T 2o6q_A          184 KTLKLDNN-QLKRVP-EGAFDSLEKLKMLQLQENP  216 (270)
T ss_dssp             CEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-cCCcCC-HHHhccccCCCEEEecCCC
Confidence            88888774 343111 1112235667777766553

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.52  E-value=2.3e-08  Score=86.05  Aligned_cols=34  Identities=15%  Similarity=0.185  Sum_probs=16.8

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ++|+.|++++ +.+++.         +.+..+++|+.|++++++
T Consensus       150 ~~L~~L~L~~-N~i~~~---------~~l~~l~~L~~L~l~~N~  183 (263)
T 1xeu_A          150 SKLEVLDLHG-NEITNT---------GGLTRLKKVNWIDLTGQK  183 (263)
T ss_dssp             TTCCEEECTT-SCCCBC---------TTSTTCCCCCEEEEEEEE
T ss_pred             CCCCEEECCC-CcCcch---------HHhccCCCCCEEeCCCCc
Confidence            5555555555 234321         223445555666655553

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.46  E-value=1.6e-08  Score=86.48  Aligned_cols=132  Identities=20%  Similarity=0.170  Sum_probs=73.1

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      ++++.|+++++ .++......+ ..+++|++|+++++ .+.... ......+++|++|+++++.  +.... ...+..++
T Consensus        35 ~~l~~L~L~~n-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~n~--l~~~~-~~~~~~l~  107 (251)
T 3m19_A           35 ADTEKLDLQST-GLATLSDATF-RGLTKLTWLNLDYN-QLQTLS-AGVFDDLTELGTLGLANNQ--LASLP-LGVFDHLT  107 (251)
T ss_dssp             TTCCEEECTTS-CCCCCCTTTT-TTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECTTSC--CCCCC-TTTTTTCT
T ss_pred             CCCCEEEccCC-CcCccCHhHh-cCcccCCEEECCCC-cCCccC-HhHhccCCcCCEEECCCCc--ccccC-hhHhcccC
Confidence            57888888886 3332211122 34788888888874 333211 1123457788888888754  32111 12234577


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|++|+++++. ++... ......+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus       108 ~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  166 (251)
T 3m19_A          108 QLDKLYLGGNQ-LKSLP-SGVFDRLTKLKELRLNTN-QLQSIPA-GAFDKLTNLQTLSLSTNQ  166 (251)
T ss_dssp             TCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCEEEcCCCc-CCCcC-hhHhccCCcccEEECcCC-cCCccCH-HHcCcCcCCCEEECCCCc
Confidence            88888887753 33211 112235677888888874 4432111 112246778888877764

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=98.45  E-value=2.5e-07  Score=89.21  Aligned_cols=36  Identities=33%  Similarity=0.287  Sum_probs=23.4

Q ss_pred             CCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccc
Q 017279          304 DEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLT  352 (374)
Q Consensus       304 ~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~  352 (374)
                      .+++|+.|+++++ .++         .+|.  .+++|+.|++++| +++
T Consensus       239 ~l~~L~~L~Ls~N-~L~---------~lp~--~~~~L~~L~Ls~N-~L~  274 (622)
T 3g06_A          239 LPSELKELMVSGN-RLT---------SLPM--LPSGLLSLSVYRN-QLT  274 (622)
T ss_dssp             CCTTCCEEECCSS-CCS---------CCCC--CCTTCCEEECCSS-CCC
T ss_pred             CCCcCcEEECCCC-CCC---------cCCc--ccccCcEEeCCCC-CCC
Confidence            3467777777773 454         2333  4677888888888 355

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.35  E-value=1.6e-05  Score=64.15  Aligned_cols=127  Identities=13%  Similarity=0.167  Sum_probs=62.3

Q ss_pred             HHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc---CCCCCeeecCCCCCCCHHHHHHHHh---cCCCCceEecCCCCC
Q 017279          202 ALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG---CPDLRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYCRN  275 (374)
Q Consensus       202 ~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~~~  275 (374)
                      .+..+...-+.|+.|+++++..+.+.+...++..   -..|+.|++++ +.+++.+...+.+   .-..|++|+|+++. 
T Consensus        32 ~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~-n~igd~ga~alA~aL~~N~tL~~L~L~~N~-  109 (197)
T 1pgv_A           32 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLAN-TAISDSEARGLIELIETSPSLRVLNVESNF-  109 (197)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTT-SCCBHHHHTTHHHHHHHCSSCCEEECCSSB-
T ss_pred             HHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccC-CCCChHHHHHHHHHHhcCCccCeEecCCCc-
Confidence            3444444455566666654334555554444332   34566666665 3455555433332   23456666666553 


Q ss_pred             CCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC-C-CCCHHHHHHHHhhCCCccCCCCCceEEecC
Q 017279          276 ITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC-T-ALTPPAVQALCDTFPALHTCSGRHSLVMSG  347 (374)
Q Consensus       276 i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~-~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~  347 (374)
                      |++.+...++.....              -+.|++|+|+++ . .+.+.+...++..+   ..-+.|+.|+++.
T Consensus       110 Ig~~Ga~ala~aL~~--------------N~tL~~L~L~n~~~~~ig~~g~~~ia~aL---~~N~tL~~L~l~~  166 (197)
T 1pgv_A          110 LTPELLARLLRSTLV--------------TQSIVEFKADNQRQSVLGNQVEMDMMMAI---EENESLLRVGISF  166 (197)
T ss_dssp             CCHHHHHHHHHHTTT--------------TCCCSEEECCCCSSCCCCHHHHHHHHHHH---HHCSSCCEEECCC
T ss_pred             CCHHHHHHHHHHHhh--------------CCceeEEECCCCcCcCcCHHHHHHHHHHH---HhCCCcCeEeccC
Confidence            666666655544211              134666666542 1 45555444444332   3344556666653

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.34  E-value=1.8e-07  Score=87.07  Aligned_cols=12  Identities=8%  Similarity=-0.161  Sum_probs=6.8

Q ss_pred             CCCCceEEecCC
Q 017279          337 CSGRHSLVMSGC  348 (374)
Q Consensus       337 ~~~L~~L~ls~C  348 (374)
                      +++|+.|++++|
T Consensus       356 l~~L~~L~L~~N  367 (454)
T 1jl5_A          356 PQNLKQLHVEYN  367 (454)
T ss_dssp             CTTCCEEECCSS
T ss_pred             hhhccEEECCCC
Confidence            455566666555

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=98.32  E-value=1.6e-08  Score=86.41  Aligned_cols=187  Identities=14%  Similarity=0.133  Sum_probs=112.4

Q ss_pred             cchhHHHhhh-ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCH
Q 017279           69 VCSGWRDAIC-LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSD  147 (374)
Q Consensus        69 vc~~w~~~~~-~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~  147 (374)
                      .|..|....| ...+.++++......   ++.  .-.++++.|+++  .+.+.......+ ..+++|++|+++++ .++.
T Consensus         3 ~Cp~~~gC~C~~~~~~l~~~~~~l~~---~p~--~~~~~l~~L~L~--~n~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~   73 (251)
T 3m19_A            3 TCETVTGCTCNEGKKEVDCQGKSLDS---VPS--GIPADTEKLDLQ--STGLATLSDATF-RGLTKLTWLNLDYN-QLQT   73 (251)
T ss_dssp             -CHHHHSSEEEGGGTEEECTTCCCSS---CCS--CCCTTCCEEECT--TSCCCCCCTTTT-TTCTTCCEEECTTS-CCCC
T ss_pred             cCCCCCceEcCCCCeEEecCCCCccc---cCC--CCCCCCCEEEcc--CCCcCccCHhHh-cCcccCCEEECCCC-cCCc
Confidence            4666655555 346677776543321   111  123689999999  444443222222 34789999999997 3433


Q ss_pred             HHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH
Q 017279          148 RSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV  227 (374)
Q Consensus       148 ~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~  227 (374)
                      ... .....+++|++|+++++ .+.... ......+++|++|+++++.  +.... ...+..+++|+.|+++++. ++..
T Consensus        74 ~~~-~~~~~l~~L~~L~L~~n-~l~~~~-~~~~~~l~~L~~L~L~~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~  146 (251)
T 3m19_A           74 LSA-GVFDDLTELGTLGLANN-QLASLP-LGVFDHLTQLDKLYLGGNQ--LKSLP-SGVFDRLTKLKELRLNTNQ-LQSI  146 (251)
T ss_dssp             CCT-TTTTTCTTCCEEECTTS-CCCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCC
T ss_pred             cCH-hHhccCCcCCEEECCCC-cccccC-hhHhcccCCCCEEEcCCCc--CCCcC-hhHhccCCcccEEECcCCc-CCcc
Confidence            211 12234799999999984 444211 1223468999999999854  33111 1223468999999999864 4432


Q ss_pred             HHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          228 GVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       228 ~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .. .....+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus       147 ~~-~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  190 (251)
T 3m19_A          147 PA-GAFDKLTNLQTLSLSTN-QLQSVPH-GAFDRLGKLQTITLFGNQ  190 (251)
T ss_dssp             CT-TTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSCC
T ss_pred             CH-HHcCcCcCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCc
Confidence            11 12346799999999995 4542111 122357889999998875

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=98.26  E-value=6.2e-07  Score=77.05  Aligned_cols=126  Identities=16%  Similarity=0.128  Sum_probs=76.4

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      +++|++|+++++.  +..-  .. ...+++|+.|+++++. +++..  . ...+++|+.|++++| .++.  +..+.  .
T Consensus        40 l~~L~~L~l~~n~--i~~l--~~-l~~l~~L~~L~L~~N~-i~~~~--~-l~~l~~L~~L~L~~N-~l~~--l~~~~--~  105 (263)
T 1xeu_A           40 LSGVQNFNGDNSN--IQSL--AG-MQFFTNLKELHLSHNQ-ISDLS--P-LKDLTKLEELSVNRN-RLKN--LNGIP--S  105 (263)
T ss_dssp             HTTCSEEECTTSC--CCCC--TT-GGGCTTCCEEECCSSC-CCCCG--G-GTTCSSCCEEECCSS-CCSC--CTTCC--C
T ss_pred             cCcCcEEECcCCC--cccc--hH-HhhCCCCCEEECCCCc-cCCCh--h-hccCCCCCEEECCCC-ccCC--cCccc--c
Confidence            4666666666643  2211  11 2346677777776643 33321  1 445677777777774 3432  11111  2


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCce
Q 017279          263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHS  342 (374)
Q Consensus       263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~  342 (374)
                      ++|+.|+++++. +++.  .                  .+..+++|+.|++++ +.+++         ++.+..+++|+.
T Consensus       106 ~~L~~L~L~~N~-l~~~--~------------------~l~~l~~L~~L~Ls~-N~i~~---------~~~l~~l~~L~~  154 (263)
T 1xeu_A          106 ACLSRLFLDNNE-LRDT--D------------------SLIHLKNLEILSIRN-NKLKS---------IVMLGFLSKLEV  154 (263)
T ss_dssp             SSCCEEECCSSC-CSBS--G------------------GGTTCTTCCEEECTT-SCCCB---------CGGGGGCTTCCE
T ss_pred             CcccEEEccCCc-cCCC--h------------------hhcCcccccEEECCC-CcCCC---------ChHHccCCCCCE
Confidence            778888888874 5431  1                  123568999999998 46764         234577899999


Q ss_pred             EEecCCcccccc
Q 017279          343 LVMSGCLNLTSV  354 (374)
Q Consensus       343 L~ls~C~~l~~~  354 (374)
                      |++++|. +++.
T Consensus       155 L~L~~N~-i~~~  165 (263)
T 1xeu_A          155 LDLHGNE-ITNT  165 (263)
T ss_dssp             EECTTSC-CCBC
T ss_pred             EECCCCc-Ccch
Confidence            9999984 6665

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=98.25  E-value=7.6e-08  Score=84.10  Aligned_cols=200  Identities=20%  Similarity=0.191  Sum_probs=126.7

Q ss_pred             hcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh
Q 017279          102 PKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG  181 (374)
Q Consensus       102 ~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~  181 (374)
                      ..+++++.+++.  ...++...    ....++++.|+++++ .++......+ ..+++|++|+++++ .++....   ..
T Consensus         7 ~~l~~l~~l~~~--~~~l~~ip----~~~~~~l~~L~L~~N-~l~~~~~~~~-~~l~~L~~L~L~~n-~l~~~~~---~~   74 (290)
T 1p9a_G            7 SKVASHLEVNCD--KRNLTALP----PDLPKDTTILHLSEN-LLYTFSLATL-MPYTRLTQLNLDRA-ELTKLQV---DG   74 (290)
T ss_dssp             ECSTTCCEEECT--TSCCSSCC----SCCCTTCCEEECTTS-CCSEEEGGGG-TTCTTCCEEECTTS-CCCEEEC---CS
T ss_pred             cccCCccEEECC--CCCCCcCC----CCCCCCCCEEEcCCC-cCCccCHHHh-hcCCCCCEEECCCC-ccCcccC---CC
Confidence            356778888887  34443211    012468999999997 3443222222 34799999999984 4443211   14


Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      .+++|++|+++++.  +.  .+......+++|+.|+++++. ++... ......+++|+.|+++++ .++... ......
T Consensus        75 ~l~~L~~L~Ls~N~--l~--~l~~~~~~l~~L~~L~l~~N~-l~~l~-~~~~~~l~~L~~L~L~~N-~l~~~~-~~~~~~  146 (290)
T 1p9a_G           75 TLPVLGTLDLSHNQ--LQ--SLPLLGQTLPALTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGN-ELKTLP-PGLLTP  146 (290)
T ss_dssp             CCTTCCEEECCSSC--CS--SCCCCTTTCTTCCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTS-CCCCCC-TTTTTT
T ss_pred             CCCcCCEEECCCCc--CC--cCchhhccCCCCCEEECCCCc-CcccC-HHHHcCCCCCCEEECCCC-CCCccC-hhhccc
Confidence            68999999999854  33  222234568899999998854 43211 122346789999999995 454211 122335


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCC
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGR  340 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L  340 (374)
                      +++|+.|+++++. ++.-..                  ..+..+++|+.|++++ +.++.         +| .+..+++|
T Consensus       147 l~~L~~L~L~~N~-l~~l~~------------------~~~~~l~~L~~L~L~~-N~l~~---------ip~~~~~~~~L  197 (290)
T 1p9a_G          147 TPKLEKLSLANNN-LTELPA------------------GLLNGLENLDTLLLQE-NSLYT---------IPKGFFGSHLL  197 (290)
T ss_dssp             CTTCCEEECTTSC-CSCCCT------------------TTTTTCTTCCEEECCS-SCCCC---------CCTTTTTTCCC
T ss_pred             ccCCCEEECCCCc-CCccCH------------------HHhcCcCCCCEEECCC-CcCCc---------cChhhcccccC
Confidence            7899999999875 442100                  0123568999999998 45652         22 34567789


Q ss_pred             ceEEecCCcc
Q 017279          341 HSLVMSGCLN  350 (374)
Q Consensus       341 ~~L~ls~C~~  350 (374)
                      +.|++++++-
T Consensus       198 ~~l~L~~Np~  207 (290)
T 1p9a_G          198 PFAFLHGNPW  207 (290)
T ss_dssp             SEEECCSCCB
T ss_pred             CeEEeCCCCc
Confidence            9999998764

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.19  E-value=2.8e-08  Score=82.33  Aligned_cols=34  Identities=24%  Similarity=0.304  Sum_probs=15.4

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG  167 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~  167 (374)
                      ++|++|+++++ .++... ......+++|++|++++
T Consensus        28 ~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~   61 (208)
T 2o6s_A           28 AQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGG   61 (208)
T ss_dssp             TTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCS
T ss_pred             CCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCC
Confidence            45666666664 222111 11112345566666654

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.18  E-value=1.9e-07  Score=75.06  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=34.2

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      +++|+.|+++++ .++.  ++.+....++|++|+++++.  +..-   .....+++|+.|+++++. ++... ..+...+
T Consensus        18 ~~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N~--l~~~---~~l~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l   87 (176)
T 1a9n_A           18 AVRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDNE--IRKL---DGFPLLRRLKTLLVNNNR-ICRIG-EGLDQAL   87 (176)
T ss_dssp             TTSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSSC--CCEE---CCCCCCSSCCEEECCSSC-CCEEC-SCHHHHC
T ss_pred             cCCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCCC--CCcc---cccccCCCCCEEECCCCc-ccccC-cchhhcC
Confidence            456666666653 3332  12222223466666666543  2221   112234555555555432 22110 0112234


Q ss_pred             CCCCeeecCC
Q 017279          237 PDLRSLDLCG  246 (374)
Q Consensus       237 ~~L~~L~l~~  246 (374)
                      ++|+.|++++
T Consensus        88 ~~L~~L~L~~   97 (176)
T 1a9n_A           88 PDLTELILTN   97 (176)
T ss_dssp             TTCCEEECCS
T ss_pred             CCCCEEECCC
Confidence            5555555555

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=98.17  E-value=1.9e-09  Score=91.48  Aligned_cols=185  Identities=16%  Similarity=0.071  Sum_probs=111.8

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      +++++|+++++ .++...... ...+++|++|+++++..++.... .....+++|++|+++++.. +.... ...+..++
T Consensus        31 ~~l~~L~l~~n-~l~~i~~~~-~~~l~~L~~L~l~~n~~l~~i~~-~~f~~l~~L~~L~l~~~n~-l~~i~-~~~f~~l~  105 (239)
T 2xwt_C           31 PSTQTLKLIET-HLRTIPSHA-FSNLPNISRIYVSIDVTLQQLES-HSFYNLSKVTHIEIRNTRN-LTYID-PDALKELP  105 (239)
T ss_dssp             TTCCEEEEESC-CCSEECTTT-TTTCTTCCEEEEECCSSCCEECT-TTEESCTTCCEEEEEEETT-CCEEC-TTSEECCT
T ss_pred             CcccEEEEeCC-cceEECHHH-ccCCCCCcEEeCCCCCCcceeCH-hHcCCCcCCcEEECCCCCC-eeEcC-HHHhCCCC
Confidence            48999999986 343321111 23489999999998532432111 1234689999999986222 22111 12234689


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCC---eeecCCCCCCCHHHHHHHHhcCCCCc-eEecCCCCCCCHHHHHHHHhc
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLR---SLDLCGCVCITDDSVIALANGCPHLR-SLGLYYCRNITDRAIYSLAQS  287 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~---~L~l~~~~~l~~~~l~~l~~~~~~L~-~L~l~~~~~i~~~~~~~l~~~  287 (374)
                      +|++|+++++. ++.  +.. ...+++|+   .|+++++..++.... .....+++|+ .|+++++. ++.-..      
T Consensus       106 ~L~~L~l~~n~-l~~--lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~-~~~~~l~~L~~~L~l~~n~-l~~i~~------  173 (239)
T 2xwt_C          106 LLKFLGIFNTG-LKM--FPD-LTKVYSTDIFFILEITDNPYMTSIPV-NAFQGLCNETLTLKLYNNG-FTSVQG------  173 (239)
T ss_dssp             TCCEEEEEEEC-CCS--CCC-CTTCCBCCSEEEEEEESCTTCCEECT-TTTTTTBSSEEEEECCSCC-CCEECT------
T ss_pred             CCCEEeCCCCC-Ccc--ccc-cccccccccccEEECCCCcchhhcCc-ccccchhcceeEEEcCCCC-CcccCH------
Confidence            99999998754 332  112 34567787   999999634542211 1123588999 99998874 432100      


Q ss_pred             CCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC-CCCceEEecCCcccccc
Q 017279          288 GVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRHSLVMSGCLNLTSV  354 (374)
Q Consensus       288 ~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~-~~L~~L~ls~C~~l~~~  354 (374)
                                   .....++|++|+++++..++....       ..+..+ ++|+.|+++++. ++..
T Consensus       174 -------------~~~~~~~L~~L~L~~n~~l~~i~~-------~~~~~l~~~L~~L~l~~N~-l~~l  220 (239)
T 2xwt_C          174 -------------YAFNGTKLDAVYLNKNKYLTVIDK-------DAFGGVYSGPSLLDVSQTS-VTAL  220 (239)
T ss_dssp             -------------TTTTTCEEEEEECTTCTTCCEECT-------TTTTTCSBCCSEEECTTCC-CCCC
T ss_pred             -------------hhcCCCCCCEEEcCCCCCcccCCH-------HHhhccccCCcEEECCCCc-cccC
Confidence                         001126899999999644652111       123567 899999999974 5544

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=98.15  E-value=7.9e-07  Score=82.74  Aligned_cols=198  Identities=15%  Similarity=0.093  Sum_probs=119.4

Q ss_pred             ccCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCC
Q 017279           79 LGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCP  158 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  158 (374)
                      ..+++++++.+....      +-...++|+.|+++  .+.+..  +   ....++|++|+++++ .++.     +....+
T Consensus        71 ~~l~~L~l~~~~l~~------lp~~~~~L~~L~l~--~n~l~~--l---p~~~~~L~~L~l~~n-~l~~-----l~~~~~  131 (454)
T 1jl5_A           71 RQAHELELNNLGLSS------LPELPPHLESLVAS--CNSLTE--L---PELPQSLKSLLVDNN-NLKA-----LSDLPP  131 (454)
T ss_dssp             HTCSEEECTTSCCSC------CCSCCTTCSEEECC--SSCCSS--C---CCCCTTCCEEECCSS-CCSC-----CCSCCT
T ss_pred             cCCCEEEecCCcccc------CCCCcCCCCEEEcc--CCcCCc--c---ccccCCCcEEECCCC-ccCc-----ccCCCC
Confidence            347888888765432      11124688999998  444443  1   123478999999886 3332     111126


Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      +|++|+++++ .+..  ++. ...+++|++|+++++.  +..     +....++|++|+++++. +..  +.. ...+++
T Consensus       132 ~L~~L~L~~n-~l~~--lp~-~~~l~~L~~L~l~~N~--l~~-----lp~~~~~L~~L~L~~n~-l~~--l~~-~~~l~~  196 (454)
T 1jl5_A          132 LLEYLGVSNN-QLEK--LPE-LQNSSFLKIIDVDNNS--LKK-----LPDLPPSLEFIAAGNNQ-LEE--LPE-LQNLPF  196 (454)
T ss_dssp             TCCEEECCSS-CCSS--CCC-CTTCTTCCEEECCSSC--CSC-----CCCCCTTCCEEECCSSC-CSS--CCC-CTTCTT
T ss_pred             CCCEEECcCC-CCCC--Ccc-cCCCCCCCEEECCCCc--Ccc-----cCCCcccccEEECcCCc-CCc--Ccc-ccCCCC
Confidence            8999999875 4432  222 4567889999998854  332     11234589999998764 333  122 346788


Q ss_pred             CCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279          239 LRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA  318 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (374)
                      |+.|++++| .++.     +....++|+.|++++|. ++.  +.                  .+..+++|++|+++++ .
T Consensus       197 L~~L~l~~N-~l~~-----l~~~~~~L~~L~l~~n~-l~~--lp------------------~~~~l~~L~~L~l~~N-~  248 (454)
T 1jl5_A          197 LTAIYADNN-SLKK-----LPDLPLSLESIVAGNNI-LEE--LP------------------ELQNLPFLTTIYADNN-L  248 (454)
T ss_dssp             CCEEECCSS-CCSS-----CCCCCTTCCEEECCSSC-CSS--CC------------------CCTTCTTCCEEECCSS-C
T ss_pred             CCEEECCCC-cCCc-----CCCCcCcccEEECcCCc-CCc--cc------------------ccCCCCCCCEEECCCC-c
Confidence            999999985 3431     11124578999998874 431  11                  1235689999999984 5


Q ss_pred             CCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ++.         +|.  ..++|+.|++++|.
T Consensus       249 l~~---------l~~--~~~~L~~L~l~~N~  268 (454)
T 1jl5_A          249 LKT---------LPD--LPPSLEALNVRDNY  268 (454)
T ss_dssp             CSS---------CCS--CCTTCCEEECCSSC
T ss_pred             CCc---------ccc--cccccCEEECCCCc
Confidence            552         222  13566666666663

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=98.10  E-value=4.8e-07  Score=72.68  Aligned_cols=131  Identities=15%  Similarity=0.129  Sum_probs=66.6

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      ++|++|+++++ .++.  +..+....++|++|+++++ .+...   .....+++|++|+++++.  +... ...++..++
T Consensus        19 ~~L~~L~l~~n-~l~~--i~~~~~~~~~L~~L~Ls~N-~l~~~---~~l~~l~~L~~L~Ls~N~--l~~~-~~~~~~~l~   88 (176)
T 1a9n_A           19 VRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSDN-EIRKL---DGFPLLRRLKTLLVNNNR--ICRI-GEGLDQALP   88 (176)
T ss_dssp             TSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCSS-CCCEE---CCCCCCSSCCEEECCSSC--CCEE-CSCHHHHCT
T ss_pred             CCceEEEeeCC-CCch--hHHhhhcCCCCCEEECCCC-CCCcc---cccccCCCCCEEECCCCc--cccc-CcchhhcCC
Confidence            44555555554 2221  1122232346666666653 33321   122346677777777644  3211 112234577


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH--HHHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD--SVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|+.|+++++. +++.........+++|+.|++++|. ++..  ....+...+|+|+.|+++.+.
T Consensus        89 ~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~l~~N~-i~~~~~~~~~~~~~l~~L~~Ld~~~n~  151 (176)
T 1a9n_A           89 DLTELILTNNS-LVELGDLDPLASLKSLTYLCILRNP-VTNKKHYRLYVIYKVPQVRVLDFQKVK  151 (176)
T ss_dssp             TCCEEECCSCC-CCCGGGGGGGGGCTTCCEEECCSSG-GGGSTTHHHHHHHHCTTCSEETTEECC
T ss_pred             CCCEEECCCCc-CCcchhhHhhhcCCCCCEEEecCCC-CCCcHhHHHHHHHHCCccceeCCCcCC
Confidence            78888887754 4331111123457888888888753 3311  111234458888888887764

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=98.07  E-value=9.1e-07  Score=84.32  Aligned_cols=190  Identities=15%  Similarity=0.095  Sum_probs=100.1

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|+++.+....   ++.  .-+++|+.|+++  .+.++...     ..+++|++|+++++ .++.  +..+   ..+
T Consensus        60 ~L~~L~Ls~n~L~~---lp~--~l~~~L~~L~Ls--~N~l~~ip-----~~l~~L~~L~Ls~N-~l~~--ip~l---~~~  121 (571)
T 3cvr_A           60 QFSELQLNRLNLSS---LPD--NLPPQITVLEIT--QNALISLP-----ELPASLEYLDACDN-RLST--LPEL---PAS  121 (571)
T ss_dssp             TCSEEECCSSCCSC---CCS--CCCTTCSEEECC--SSCCSCCC-----CCCTTCCEEECCSS-CCSC--CCCC---CTT
T ss_pred             CccEEEeCCCCCCc---cCH--hHcCCCCEEECc--CCCCcccc-----cccCCCCEEEccCC-CCCC--cchh---hcC
Confidence            57778877654321   111  013678888887  44444211     33677888888776 3332  1111   127


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |++|+++++ .++.  ++.   .+++|+.|+++++.  ++.  +..   .+++|+.|+++++. ++.  +.. ..  ++|
T Consensus       122 L~~L~Ls~N-~l~~--lp~---~l~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-L~~--lp~-l~--~~L  182 (571)
T 3cvr_A          122 LKHLDVDNN-QLTM--LPE---LPALLEYINADNNQ--LTM--LPE---LPTSLEVLSVRNNQ-LTF--LPE-LP--ESL  182 (571)
T ss_dssp             CCEEECCSS-CCSC--CCC---CCTTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-CSC--CCC-CC--TTC
T ss_pred             CCEEECCCC-cCCC--CCC---cCccccEEeCCCCc--cCc--CCC---cCCCcCEEECCCCC-CCC--cch-hh--CCC
Confidence            888888764 3332  221   46778888887754  322  111   46778888887754 332  111 11  678


Q ss_pred             CeeecCCCCCCCHHH-H-HHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          240 RSLDLCGCVCITDDS-V-IALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~-l-~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +.|++++| .++... + ..+....+.|+.|++++|. ++.                   .+..+..+++|+.|++++ +
T Consensus       183 ~~L~Ls~N-~L~~lp~~~~~L~~~~~~L~~L~Ls~N~-l~~-------------------lp~~l~~l~~L~~L~L~~-N  240 (571)
T 3cvr_A          183 EALDVSTN-LLESLPAVPVRNHHSEETEIFFRCRENR-ITH-------------------IPENILSLDPTCTIILED-N  240 (571)
T ss_dssp             CEEECCSS-CCSSCCCCC--------CCEEEECCSSC-CCC-------------------CCGGGGGSCTTEEEECCS-S
T ss_pred             CEEECcCC-CCCchhhHHHhhhcccccceEEecCCCc-cee-------------------cCHHHhcCCCCCEEEeeC-C
Confidence            88888874 443100 0 0111112233777777764 441                   011123457888888888 5


Q ss_pred             CCCHHHHHHHH
Q 017279          318 ALTPPAVQALC  328 (374)
Q Consensus       318 ~l~~~~l~~l~  328 (374)
                      .++......+.
T Consensus       241 ~l~~~~p~~l~  251 (571)
T 3cvr_A          241 PLSSRIRESLS  251 (571)
T ss_dssp             SCCHHHHHHHH
T ss_pred             cCCCcCHHHHH
Confidence            67766555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=98.05  E-value=4.5e-05  Score=61.60  Aligned_cols=106  Identities=15%  Similarity=0.186  Sum_probs=84.4

Q ss_pred             HHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc---CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccc
Q 017279          226 DVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG---CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGR  302 (374)
Q Consensus       226 ~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~---~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~  302 (374)
                      +..+..+...-+.|++|++++++.+.+++...+.+.   -..|+.|+|++|. +.+.+...++....             
T Consensus        30 ~~~l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~-igd~ga~alA~aL~-------------   95 (197)
T 1pgv_A           30 ESCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA-ISDSEARGLIELIE-------------   95 (197)
T ss_dssp             HHHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC-CBHHHHTTHHHHHH-------------
T ss_pred             HHHHHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCC-CChHHHHHHHHHHh-------------
Confidence            345667777788999999998658999888777765   4579999999996 99998887775421             


Q ss_pred             cCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcc
Q 017279          303 YDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLN  350 (374)
Q Consensus       303 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~  350 (374)
                       .-+.|++|+|++ +.+++.+...++..+.   .-+.|+.|+|++|..
T Consensus        96 -~N~tL~~L~L~~-N~Ig~~Ga~ala~aL~---~N~tL~~L~L~n~~~  138 (197)
T 1pgv_A           96 -TSPSLRVLNVES-NFLTPELLARLLRSTL---VTQSIVEFKADNQRQ  138 (197)
T ss_dssp             -HCSSCCEEECCS-SBCCHHHHHHHHHHTT---TTCCCSEEECCCCSS
T ss_pred             -cCCccCeEecCC-CcCCHHHHHHHHHHHh---hCCceeEEECCCCcC
Confidence             127899999999 7899999999987754   446799999998753

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=98.03  E-value=8.6e-07  Score=73.23  Aligned_cols=149  Identities=16%  Similarity=0.067  Sum_probs=85.6

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      .++|++|+++++ .+.... ......+++|++|+++++.  +... ....+..+++|++|+++++. ++... ......+
T Consensus        27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~Ls~n~-l~~~~-~~~~~~l   99 (208)
T 2o6s_A           27 PAQTTYLDLETN-SLKSLP-NGVFDELTSLTQLYLGGNK--LQSL-PNGVFNKLTSLTYLNLSTNQ-LQSLP-NGVFDKL   99 (208)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred             CCCCcEEEcCCC-ccCcCC-hhhhcccccCcEEECCCCc--cCcc-ChhhcCCCCCcCEEECCCCc-CCccC-HhHhcCc
Confidence            467899999874 443211 1123457889999988754  3311 11223457888888888753 33211 1123457


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                      ++|++|+++++ .++... ......+++|+.|+++++. ++.....                  .+..+++|++|+++++
T Consensus       100 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~~~------------------~~~~l~~L~~L~l~~N  158 (208)
T 2o6s_A          100 TQLKELALNTN-QLQSLP-DGVFDKLTQLKDLRLYQNQ-LKSVPDG------------------VFDRLTSLQYIWLHDN  158 (208)
T ss_dssp             TTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CSCCCTT------------------TTTTCTTCCEEECCSC
T ss_pred             cCCCEEEcCCC-cCcccC-HhHhccCCcCCEEECCCCc-cceeCHH------------------HhccCCCccEEEecCC
Confidence            88888888884 444211 1122347888888888774 4321100                  1224578888888874


Q ss_pred             CCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279          317 TALTPPAVQALCDTFPALHTCSGRHSLVMSGC  348 (374)
Q Consensus       317 ~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C  348 (374)
                       .+.              ..|++|+.|+++++
T Consensus       159 -~~~--------------~~~~~l~~L~~~~n  175 (208)
T 2o6s_A          159 -PWD--------------CTCPGIRYLSEWIN  175 (208)
T ss_dssp             -CBC--------------CCTTTTHHHHHHHH
T ss_pred             -Cee--------------cCCCCHHHHHHHHH
Confidence             222              45667777766654

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=98.02  E-value=1.1e-07  Score=79.48  Aligned_cols=109  Identities=17%  Similarity=0.151  Sum_probs=54.5

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      +.+++|+++++ .+...........+++|++|+++++.  +.... ...+..+++|++|+++++. ++... ......++
T Consensus        32 ~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N~--i~~i~-~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~  105 (220)
T 2v70_A           32 QYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNNK--ITDIE-EGAFEGASGVNEILLTSNR-LENVQ-HKMFKGLE  105 (220)
T ss_dssp             TTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSSC--CCEEC-TTTTTTCTTCCEEECCSSC-CCCCC-GGGGTTCS
T ss_pred             CCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCCc--CCEEC-HHHhCCCCCCCEEECCCCc-cCccC-HhHhcCCc
Confidence            45677877763 34322111123456777777777643  22111 1123346777777776643 32211 11223567


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|++|+++++ .++......+ ..+++|+.|+++++.
T Consensus       106 ~L~~L~Ls~N-~l~~~~~~~~-~~l~~L~~L~L~~N~  140 (220)
T 2v70_A          106 SLKTLMLRSN-RITCVGNDSF-IGLSSVRLLSLYDNQ  140 (220)
T ss_dssp             SCCEEECTTS-CCCCBCTTSS-TTCTTCSEEECTTSC
T ss_pred             CCCEEECCCC-cCCeECHhHc-CCCccCCEEECCCCc
Confidence            7777777774 3332111111 235667777776653

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.94  E-value=7.8e-07  Score=74.23  Aligned_cols=108  Identities=19%  Similarity=0.098  Sum_probs=50.9

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|+.|+++++ .+..... ..+..+++|++|+++++.  +.... ...+..+++|++|+++++. ++... ......++
T Consensus        32 ~~l~~L~l~~n-~i~~i~~-~~~~~l~~L~~L~Ls~N~--i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~  104 (220)
T 2v9t_B           32 ETITEIRLEQN-TIKVIPP-GAFSPYKKLRRIDLSNNQ--ISELA-PDAFQGLRSLNSLVLYGNK-ITELP-KSLFEGLF  104 (220)
T ss_dssp             TTCCEEECCSS-CCCEECT-TSSTTCTTCCEEECCSSC--CCEEC-TTTTTTCSSCCEEECCSSC-CCCCC-TTTTTTCT
T ss_pred             cCCCEEECCCC-cCCCcCH-hHhhCCCCCCEEECCCCc--CCCcC-HHHhhCCcCCCEEECCCCc-CCccC-HhHccCCC
Confidence            46777777763 3332111 112346677777777643  22110 1122345667777776543 32110 11223456


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|+.|+++++ .++..... ....+++|+.|+++++.
T Consensus       105 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  139 (220)
T 2v9t_B          105 SLQLLLLNAN-KINCLRVD-AFQDLHNLNLLSLYDNK  139 (220)
T ss_dssp             TCCEEECCSS-CCCCCCTT-TTTTCTTCCEEECCSSC
T ss_pred             CCCEEECCCC-CCCEeCHH-HcCCCCCCCEEECCCCc
Confidence            6666666663 33321111 11235666666666553

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.94  E-value=4.5e-07  Score=88.00  Aligned_cols=12  Identities=50%  Similarity=0.620  Sum_probs=6.4

Q ss_pred             CCCCCEEecCCC
Q 017279          131 CHDLQDLDLSKS  142 (374)
Q Consensus       131 ~~~L~~L~l~~~  142 (374)
                      +++|++|+++++
T Consensus        75 l~~L~~L~Ls~N   86 (635)
T 4g8a_A           75 FPELQVLDLSRC   86 (635)
T ss_dssp             CTTCCEEECTTC
T ss_pred             CCCCCEEECCCC
Confidence            455555555554

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=97.94  E-value=2.5e-06  Score=81.25  Aligned_cols=186  Identities=16%  Similarity=0.119  Sum_probs=115.5

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  183 (374)
                      +.+++.|+++  .+.++.. ..   ..+++|++|+++++ .++.  +.   ..+++|++|+++++ .++.  ++. .  .
T Consensus        58 ~~~L~~L~Ls--~n~L~~l-p~---~l~~~L~~L~Ls~N-~l~~--ip---~~l~~L~~L~Ls~N-~l~~--ip~-l--~  119 (571)
T 3cvr_A           58 INQFSELQLN--RLNLSSL-PD---NLPPQITVLEITQN-ALIS--LP---ELPASLEYLDACDN-RLST--LPE-L--P  119 (571)
T ss_dssp             HTTCSEEECC--SSCCSCC-CS---CCCTTCSEEECCSS-CCSC--CC---CCCTTCCEEECCSS-CCSC--CCC-C--C
T ss_pred             cCCccEEEeC--CCCCCcc-CH---hHcCCCCEEECcCC-CCcc--cc---cccCCCCEEEccCC-CCCC--cch-h--h
Confidence            3589999998  4444431 11   12478999999987 4442  22   34789999999985 4443  222 1  2


Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      .+|++|+++++.  ++.  +..   .+++|+.|+++++. ++.  +.   ..+++|+.|++++| .++.  +..+   .+
T Consensus       120 ~~L~~L~Ls~N~--l~~--lp~---~l~~L~~L~Ls~N~-l~~--lp---~~l~~L~~L~Ls~N-~L~~--lp~l---~~  180 (571)
T 3cvr_A          120 ASLKHLDVDNNQ--LTM--LPE---LPALLEYINADNNQ-LTM--LP---ELPTSLEVLSVRNN-QLTF--LPEL---PE  180 (571)
T ss_dssp             TTCCEEECCSSC--CSC--CCC---CCTTCCEEECCSSC-CSC--CC---CCCTTCCEEECCSS-CCSC--CCCC---CT
T ss_pred             cCCCEEECCCCc--CCC--CCC---cCccccEEeCCCCc-cCc--CC---CcCCCcCEEECCCC-CCCC--cchh---hC
Confidence            389999999854  333  222   57899999998864 433  11   15689999999995 4543  2221   27


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-CccCCCCCce
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALHTCSGRHS  342 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~~~~~L~~  342 (374)
                      +|+.|+++++. ++.  +..+...             -....+.|+.|++++ +.++         .+| .+..+++|+.
T Consensus       181 ~L~~L~Ls~N~-L~~--lp~~~~~-------------L~~~~~~L~~L~Ls~-N~l~---------~lp~~l~~l~~L~~  234 (571)
T 3cvr_A          181 SLEALDVSTNL-LES--LPAVPVR-------------NHHSEETEIFFRCRE-NRIT---------HIPENILSLDPTCT  234 (571)
T ss_dssp             TCCEEECCSSC-CSS--CCCCC---------------------CCEEEECCS-SCCC---------CCCGGGGGSCTTEE
T ss_pred             CCCEEECcCCC-CCc--hhhHHHh-------------hhcccccceEEecCC-Ccce---------ecCHHHhcCCCCCE
Confidence            89999999885 442  0000000             001123459999998 4676         234 2556899999


Q ss_pred             EEecCCccccc
Q 017279          343 LVMSGCLNLTS  353 (374)
Q Consensus       343 L~ls~C~~l~~  353 (374)
                      |++++|+ ++.
T Consensus       235 L~L~~N~-l~~  244 (571)
T 3cvr_A          235 IILEDNP-LSS  244 (571)
T ss_dssp             EECCSSS-CCH
T ss_pred             EEeeCCc-CCC
Confidence            9999996 544

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=97.93  E-value=2.4e-08  Score=96.98  Aligned_cols=134  Identities=17%  Similarity=0.070  Sum_probs=69.9

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      +++++.++++.+..  .. ........++.|+.|+++++.... .........+++|+.|++++| .++...- ....++
T Consensus       444 l~~l~~l~ls~n~l--~~-~~~~~~~~~~~L~~L~Ls~N~~~~-~~~~~~~~~l~~L~~L~Ls~N-~L~~l~~-~~f~~l  517 (635)
T 4g8a_A          444 LRNLIYLDISHTHT--RV-AFNGIFNGLSSLEVLKMAGNSFQE-NFLPDIFTELRNLTFLDLSQC-QLEQLSP-TAFNSL  517 (635)
T ss_dssp             CTTCCEEECTTSCC--EE-CCTTTTTTCTTCCEEECTTCEEGG-GEECSCCTTCTTCCEEECTTS-CCCEECT-TTTTTC
T ss_pred             cccccccccccccc--cc-ccccccccchhhhhhhhhhccccc-ccCchhhhhccccCEEECCCC-ccCCcCh-HHHcCC
Confidence            45566666555321  11 111223345677777776643111 101112335677888888875 3432111 122347


Q ss_pred             CCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCC-CCCc
Q 017279          263 PHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTC-SGRH  341 (374)
Q Consensus       263 ~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~-~~L~  341 (374)
                      ++|+.|+++++. ++.-.                  ...+..+++|++|++++ +.++....       ..+..+ ++|+
T Consensus       518 ~~L~~L~Ls~N~-l~~l~------------------~~~~~~l~~L~~L~Ls~-N~l~~~~~-------~~l~~l~~~L~  570 (635)
T 4g8a_A          518 SSLQVLNMSHNN-FFSLD------------------TFPYKCLNSLQVLDYSL-NHIMTSKK-------QELQHFPSSLA  570 (635)
T ss_dssp             TTCCEEECTTSC-CCBCC------------------CGGGTTCTTCCEEECTT-SCCCBCCS-------SCTTCCCTTCC
T ss_pred             CCCCEEECCCCc-CCCCC------------------hhHHhCCCCCCEEECCC-CcCCCCCH-------HHHHhhhCcCC
Confidence            778888887764 33210                  11133568899999988 45653111       123444 5789


Q ss_pred             eEEecCCc
Q 017279          342 SLVMSGCL  349 (374)
Q Consensus       342 ~L~ls~C~  349 (374)
                      .|++++++
T Consensus       571 ~L~L~~Np  578 (635)
T 4g8a_A          571 FLNLTQND  578 (635)
T ss_dssp             EEECTTCC
T ss_pred             EEEeeCCC
Confidence            99998865

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.92  E-value=1.4e-07  Score=85.11  Aligned_cols=134  Identities=21%  Similarity=0.065  Sum_probs=65.8

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      +.++.|+++++ .++......+...+++|++|+|+++ .+..... ..+..+++|++|+|+++.  +.... ...+..++
T Consensus        39 ~~l~~L~Ls~N-~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l~  112 (361)
T 2xot_A           39 SYTALLDLSHN-NLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISS-EAFVPVPNLRYLDLSSNH--LHTLD-EFLFSDLQ  112 (361)
T ss_dssp             TTCSEEECCSS-CCCEECTTSSSSCCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC--CCEEC-TTTTTTCT
T ss_pred             CCCCEEECCCC-CCCccChhhhhhcccccCEEECCCC-cCCccCh-hhccCCCCCCEEECCCCc--CCcCC-HHHhCCCc
Confidence            45788888876 3332111111114677888888763 3332111 112346777777777643  22110 11233567


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHH--HhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIAL--ANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l--~~~~~~L~~L~l~~~~  274 (374)
                      +|+.|+++++. +.... ......+++|+.|+++++ .++......+  ...+++|+.|+++++.
T Consensus       113 ~L~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~~~~~l~~L~~L~L~~N~  174 (361)
T 2xot_A          113 ALEVLLLYNNH-IVVVD-RNAFEDMAQLQKLYLSQN-QISRFPVELIKDGNKLPKLMLLDLSSNK  174 (361)
T ss_dssp             TCCEEECCSSC-CCEEC-TTTTTTCTTCCEEECCSS-CCCSCCGGGTC----CTTCCEEECCSSC
T ss_pred             CCCEEECCCCc-ccEEC-HHHhCCcccCCEEECCCC-cCCeeCHHHhcCcccCCcCCEEECCCCC
Confidence            77777777643 33211 111234667777777764 3332111101  0235667777766653

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.90  E-value=2.2e-08  Score=90.03  Aligned_cols=223  Identities=14%  Similarity=0.108  Sum_probs=98.6

Q ss_pred             CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      +++|+++++...  ......+..+++|++|+++  .+.+....-......+++++++.+..+..+..-. ......+++|
T Consensus        32 l~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~Ls--~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~~L  106 (350)
T 4ay9_X           32 AIELRFVLTKLR--VIQKGAFSGFGDLEKIEIS--QNDVLEVIEADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLPNL  106 (350)
T ss_dssp             CSEEEEESCCCS--EECTTSSTTCTTCCEEEEE--CCTTCCEECTTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCTTC
T ss_pred             CCEEEccCCcCC--CcCHHHHcCCCCCCEEECc--CCCCCCccChhHhhcchhhhhhhcccCCcccccC-chhhhhcccc
Confidence            566666654432  1111234566777777777  2222111000111234555543332222222110 0112336777


Q ss_pred             cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR  240 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  240 (374)
                      ++|+++++ .+....-. ......++..|++.++.. +..-....+......++.|+++++. ++..  ..-.-..++|+
T Consensus       107 ~~L~l~~n-~l~~~~~~-~~~~~~~l~~l~l~~~~~-i~~l~~~~f~~~~~~l~~L~L~~N~-i~~i--~~~~f~~~~L~  180 (350)
T 4ay9_X          107 QYLLISNT-GIKHLPDV-HKIHSLQKVLLDIQDNIN-IHTIERNSFVGLSFESVILWLNKNG-IQEI--HNSAFNGTQLD  180 (350)
T ss_dssp             CEEEEEEE-CCSSCCCC-TTCCBSSCEEEEEESCTT-CCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTSSTTEEEE
T ss_pred             cccccccc-ccccCCch-hhcccchhhhhhhccccc-cccccccchhhcchhhhhhcccccc-ccCC--Chhhccccchh
Confidence            77777763 22211000 011234556666654322 1110001111122357777777643 3321  11111235677


Q ss_pred             eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCC
Q 017279          241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALT  320 (374)
Q Consensus       241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~  320 (374)
                      .|++.+++.++... ......+++|+.|+++++. ++.     +...                .+.+|+.|.+.++.+++
T Consensus       181 ~l~l~~~n~l~~i~-~~~f~~l~~L~~LdLs~N~-l~~-----lp~~----------------~~~~L~~L~~l~~~~l~  237 (350)
T 4ay9_X          181 ELNLSDNNNLEELP-NDVFHGASGPVILDISRTR-IHS-----LPSY----------------GLENLKKLRARSTYNLK  237 (350)
T ss_dssp             EEECTTCTTCCCCC-TTTTTTEECCSEEECTTSC-CCC-----CCSS----------------SCTTCCEEECTTCTTCC
T ss_pred             HHhhccCCcccCCC-HHHhccCcccchhhcCCCC-cCc-----cChh----------------hhccchHhhhccCCCcC
Confidence            77777655443211 1122346778888887764 432     1000                23556666655554443


Q ss_pred             HHHHHHHHhhCCCccCCCCCceEEec
Q 017279          321 PPAVQALCDTFPALHTCSGRHSLVMS  346 (374)
Q Consensus       321 ~~~l~~l~~~~~~l~~~~~L~~L~ls  346 (374)
                               .+|.+..+++|+.++++
T Consensus       238 ---------~lP~l~~l~~L~~l~l~  254 (350)
T 4ay9_X          238 ---------KLPTLEKLVALMEASLT  254 (350)
T ss_dssp             ---------CCCCTTTCCSCCEEECS
T ss_pred             ---------cCCCchhCcChhhCcCC
Confidence                     35555666666666664

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.86  E-value=8.1e-07  Score=72.80  Aligned_cols=128  Identities=19%  Similarity=0.218  Sum_probs=76.5

Q ss_pred             HhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHh
Q 017279          129 NSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR  208 (374)
Q Consensus       129 ~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~  208 (374)
                      ..+++|++|+++++ .++.  +..+ ..+++|++|+++++ .+..  ++.....+++|++|+++++.  +..  +.. ..
T Consensus        45 ~~l~~L~~L~ls~n-~l~~--l~~~-~~l~~L~~L~l~~n-~l~~--l~~~~~~~~~L~~L~L~~N~--l~~--l~~-~~  112 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ--IAS--LSG-IE  112 (198)
T ss_dssp             HHTTTCSEEECSEE-EESC--CCCH-HHHTTCCEEEEEEE-EECS--CSSHHHHHHHCSEEEEEEEE--CCC--HHH-HH
T ss_pred             hcCCCCCEEECCCC-CCcc--cccc-ccCCCCCEEECCCC-Cccc--ccchhhcCCcCCEEECcCCc--CCc--CCc-cc
Confidence            34778888888775 2322  1122 23678888888764 3331  22233345788888888754  333  222 33


Q ss_pred             cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH---------HHHHHHhcCCCCceEec
Q 017279          209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD---------SVIALANGCPHLRSLGL  270 (374)
Q Consensus       209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---------~l~~l~~~~~~L~~L~l  270 (374)
                      .+++|+.|+++++. +++.........+++|++|++++| .++..         ....+...+++|+.|+-
T Consensus       113 ~l~~L~~L~l~~N~-i~~~~~~~~l~~l~~L~~L~l~~N-~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld~  181 (198)
T 1ds9_A          113 KLVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGN-PLYNDYKENNATSEYRIEVVKRLPNLKKLDG  181 (198)
T ss_dssp             HHHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSC-HHHHHHHTTTTHHHHHHHHHHHCSSCSEECC
T ss_pred             cCCCCCEEECCCCc-CCchhHHHHHhcCCCCCEEEecCC-ccccccccccchHHHHHHHHHhCCCcEEECC
Confidence            46788888888754 554322233456888999999885 34322         12233456899999873

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.82  E-value=7.8e-07  Score=74.73  Aligned_cols=61  Identities=11%  Similarity=-0.023  Sum_probs=28.3

Q ss_pred             cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .+++|+.|+++++. +..  +......+++|+.|+++++ .++.... .....+++|+.|++.+++
T Consensus       110 ~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          110 RLVHLKELFMCCNK-LTE--LPRGIERLTHLTHLALDQN-QLKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCTTCCEEECCSSC-CCS--CCTTGGGCTTCSEEECCSS-CCCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             cchhhCeEeccCCc-ccc--cCcccccCCCCCEEECCCC-cCCccCH-HHHhCCCCCCEEEeeCCC
Confidence            35555666555532 221  1111234566666666663 3331111 122235666666666654

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=97.82  E-value=8.5e-07  Score=72.69  Aligned_cols=106  Identities=16%  Similarity=0.151  Sum_probs=73.1

Q ss_pred             hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh
Q 017279          155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY  234 (374)
Q Consensus       155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  234 (374)
                      ..+++|++|+++++ .+..  ++ ....+++|+.|+++++.  +.  .+......+++|+.|+++++. ++..  .. ..
T Consensus        45 ~~l~~L~~L~ls~n-~l~~--l~-~~~~l~~L~~L~l~~n~--l~--~l~~~~~~~~~L~~L~L~~N~-l~~l--~~-~~  112 (198)
T 1ds9_A           45 STLKACKHLALSTN-NIEK--IS-SLSGMENLRILSLGRNL--IK--KIENLDAVADTLEELWISYNQ-IASL--SG-IE  112 (198)
T ss_dssp             HHTTTCSEEECSEE-EESC--CC-CHHHHTTCCEEEEEEEE--EC--SCSSHHHHHHHCSEEEEEEEE-CCCH--HH-HH
T ss_pred             hcCCCCCEEECCCC-CCcc--cc-ccccCCCCCEEECCCCC--cc--cccchhhcCCcCCEEECcCCc-CCcC--Cc-cc
Confidence            34899999999874 3333  22 23357999999999865  33  233344456899999999864 5542  23 33


Q ss_pred             cCCCCCeeecCCCCCCCHH-HHHHHHhcCCCCceEecCCCC
Q 017279          235 GCPDLRSLDLCGCVCITDD-SVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       235 ~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .+++|+.|++++| .++.. .+..+ ..+++|+.|+++++.
T Consensus       113 ~l~~L~~L~l~~N-~i~~~~~~~~l-~~l~~L~~L~l~~N~  151 (198)
T 1ds9_A          113 KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSCH
T ss_pred             cCCCCCEEECCCC-cCCchhHHHHH-hcCCCCCEEEecCCc
Confidence            5789999999995 56543 33333 459999999999885

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=97.81  E-value=2.5e-08  Score=89.72  Aligned_cols=219  Identities=13%  Similarity=0.020  Sum_probs=116.8

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.++..... ....+++|++|+++++...+... ......+++++++....+..+.... +..+..++
T Consensus        30 ~~l~~L~Ls--~N~i~~i~~~-~f~~l~~L~~L~Ls~N~i~~~i~-~~~f~~L~~l~~~l~~~~N~l~~l~-~~~f~~l~  104 (350)
T 4ay9_X           30 RNAIELRFV--LTKLRVIQKG-AFSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYIN-PEAFQNLP  104 (350)
T ss_dssp             TTCSEEEEE--SCCCSEECTT-SSTTCTTCCEEEEECCTTCCEEC-TTSBCSCTTCCEEEEEEETTCCEEC-TTSBCCCT
T ss_pred             CCCCEEEcc--CCcCCCcCHH-HHcCCCCCCEEECcCCCCCCccC-hhHhhcchhhhhhhcccCCcccccC-chhhhhcc
Confidence            679999999  5555432111 12347899999999874322100 0112235666665443333433211 11234578


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|+++++.  +.... ........++..|++.++..+.......+......++.|+++++ .++... .... ...+
T Consensus       105 ~L~~L~l~~n~--l~~~~-~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N-~i~~i~-~~~f-~~~~  178 (350)
T 4ay9_X          105 NLQYLLISNTG--IKHLP-DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN-GIQEIH-NSAF-NGTQ  178 (350)
T ss_dssp             TCCEEEEEEEC--CSSCC-CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-CCCEEC-TTSS-TTEE
T ss_pred             ccccccccccc--cccCC-chhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-cccCCC-hhhc-cccc
Confidence            99999998744  22110 00111345677777765443332111111212246888999984 454211 1111 2467


Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279          265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV  344 (374)
Q Consensus       265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~  344 (374)
                      |+.|.+.++..++.-...                  .+..+++|++|++++ +.++         .+|. ..+.+|+.|.
T Consensus       179 L~~l~l~~~n~l~~i~~~------------------~f~~l~~L~~LdLs~-N~l~---------~lp~-~~~~~L~~L~  229 (350)
T 4ay9_X          179 LDELNLSDNNNLEELPND------------------VFHGASGPVILDISR-TRIH---------SLPS-YGLENLKKLR  229 (350)
T ss_dssp             EEEEECTTCTTCCCCCTT------------------TTTTEECCSEEECTT-SCCC---------CCCS-SSCTTCCEEE
T ss_pred             hhHHhhccCCcccCCCHH------------------HhccCcccchhhcCC-CCcC---------ccCh-hhhccchHhh
Confidence            888888765544321111                  123458999999999 4666         2332 2467788888


Q ss_pred             ecCCcccccccceecCccc
Q 017279          345 MSGCLNLTSVHCVCAGQSH  363 (374)
Q Consensus       345 ls~C~~l~~~~~~~~~~~~  363 (374)
                      +.+|.+++..--...+.++
T Consensus       230 ~l~~~~l~~lP~l~~l~~L  248 (350)
T 4ay9_X          230 ARSTYNLKKLPTLEKLVAL  248 (350)
T ss_dssp             CTTCTTCCCCCCTTTCCSC
T ss_pred             hccCCCcCcCCCchhCcCh
Confidence            8888776654433333333

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=97.78  E-value=6e-07  Score=74.94  Aligned_cols=134  Identities=16%  Similarity=0.108  Sum_probs=84.0

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      .+.+++|+++++ .++..........+++|++|+++++ .++.... ..+..+++|++|+++++.  +.... ...+..+
T Consensus        31 ~~~~~~L~L~~N-~l~~~~~~~~~~~l~~L~~L~L~~N-~i~~i~~-~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l  104 (220)
T 2v70_A           31 PQYTAELRLNNN-EFTVLEATGIFKKLPQLRKINFSNN-KITDIEE-GAFEGASGVNEILLTSNR--LENVQ-HKMFKGL  104 (220)
T ss_dssp             CTTCSEEECCSS-CCCEECCCCCGGGCTTCCEEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC--CCCCC-GGGGTTC
T ss_pred             CCCCCEEEcCCC-cCCccCchhhhccCCCCCEEECCCC-cCCEECH-HHhCCCCCCCEEECCCCc--cCccC-HhHhcCC
Confidence            356899999997 3433211122345899999999984 4443211 123468999999999855  33211 2234568


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|++|+++++. +.... ......+++|+.|+++++ .++..... ....+++|+.|+++++.
T Consensus       105 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A          105 ESLKTLMLRSNR-ITCVG-NDSFIGLSSVRLLSLYDN-QITTVAPG-AFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             SSCCEEECTTSC-CCCBC-TTSSTTCTTCSEEECTTS-CCCCBCTT-TTTTCTTCCEEECCSCC
T ss_pred             cCCCEEECCCCc-CCeEC-HhHcCCCccCCEEECCCC-cCCEECHH-HhcCCCCCCEEEecCcC
Confidence            999999999864 43321 112346799999999995 45422111 22347888899888765

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=97.77  E-value=5e-07  Score=81.50  Aligned_cols=158  Identities=22%  Similarity=0.161  Sum_probs=82.8

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      +.++.|+++  .+.++......+...+++|++|+++++ .++......+ ..+++|++|+|+++ .+.... ...+..++
T Consensus        39 ~~l~~L~Ls--~N~l~~l~~~~~~~~l~~L~~L~L~~N-~i~~i~~~~~-~~l~~L~~L~Ls~N-~l~~~~-~~~~~~l~  112 (361)
T 2xot_A           39 SYTALLDLS--HNNLSRLRAEWTPTRLTNLHSLLLSHN-HLNFISSEAF-VPVPNLRYLDLSSN-HLHTLD-EFLFSDLQ  112 (361)
T ss_dssp             TTCSEEECC--SSCCCEECTTSSSSCCTTCCEEECCSS-CCCEECTTTT-TTCTTCCEEECCSS-CCCEEC-TTTTTTCT
T ss_pred             CCCCEEECC--CCCCCccChhhhhhcccccCEEECCCC-cCCccChhhc-cCCCCCCEEECCCC-cCCcCC-HHHhCCCc
Confidence            456777777  444443222111114677888888775 3332111111 23678888888774 343211 11233577


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHH--HhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL--AYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l--~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      +|++|+|+++.  +.... ...+..+++|+.|+++++. ++......+  ...+++|+.|+++++ .++......+. .+
T Consensus       113 ~L~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~~~~l~~L~~L~L~~N-~l~~l~~~~~~-~l  186 (361)
T 2xot_A          113 ALEVLLLYNNH--IVVVD-RNAFEDMAQLQKLYLSQNQ-ISRFPVELIKDGNKLPKLMLLDLSSN-KLKKLPLTDLQ-KL  186 (361)
T ss_dssp             TCCEEECCSSC--CCEEC-TTTTTTCTTCCEEECCSSC-CCSCCGGGTC----CTTCCEEECCSS-CCCCCCHHHHH-HS
T ss_pred             CCCEEECCCCc--ccEEC-HHHhCCcccCCEEECCCCc-CCeeCHHHhcCcccCCcCCEEECCCC-CCCccCHHHhh-hc
Confidence            88888888754  32111 1123457788888887753 332111111  134788888888884 45432222333 35


Q ss_pred             CC--CceEecCCCC
Q 017279          263 PH--LRSLGLYYCR  274 (374)
Q Consensus       263 ~~--L~~L~l~~~~  274 (374)
                      +.  |+.|++.+++
T Consensus       187 ~~~~l~~l~l~~N~  200 (361)
T 2xot_A          187 PAWVKNGLYLHNNP  200 (361)
T ss_dssp             CHHHHTTEECCSSC
T ss_pred             cHhhcceEEecCCC
Confidence            55  4778888765

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=97.74  E-value=8.7e-07  Score=73.96  Aligned_cols=133  Identities=15%  Similarity=0.081  Sum_probs=83.6

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      .++++.|+++++ .++..... ....+++|++|+++++ .+.... +..+..+++|++|+++++.  +..- ....+..+
T Consensus        31 ~~~l~~L~l~~n-~i~~i~~~-~~~~l~~L~~L~Ls~N-~i~~~~-~~~~~~l~~L~~L~Ls~N~--l~~l-~~~~f~~l  103 (220)
T 2v9t_B           31 PETITEIRLEQN-TIKVIPPG-AFSPYKKLRRIDLSNN-QISELA-PDAFQGLRSLNSLVLYGNK--ITEL-PKSLFEGL  103 (220)
T ss_dssp             CTTCCEEECCSS-CCCEECTT-SSTTCTTCCEEECCSS-CCCEEC-TTTTTTCSSCCEEECCSSC--CCCC-CTTTTTTC
T ss_pred             CcCCCEEECCCC-cCCCcCHh-HhhCCCCCCEEECCCC-cCCCcC-HHHhhCCcCCCEEECCCCc--CCcc-CHhHccCC
Confidence            368999999986 34321111 1234789999999984 443211 1223458999999999854  3311 12234568


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++. ++... ......+++|+.|+++++ .++.... .....+++|+.|+++++.
T Consensus       104 ~~L~~L~L~~N~-l~~~~-~~~~~~l~~L~~L~L~~N-~l~~~~~-~~~~~l~~L~~L~L~~N~  163 (220)
T 2v9t_B          104 FSLQLLLLNANK-INCLR-VDAFQDLHNLNLLSLYDN-KLQTIAK-GTFSPLRAIQTMHLAQNP  163 (220)
T ss_dssp             TTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCSCCCT-TTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCCC-CCEeC-HHHcCCCCCCCEEECCCC-cCCEECH-HHHhCCCCCCEEEeCCCC
Confidence            999999999864 43321 122346799999999995 4442211 122347888888888765

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=97.73  E-value=2.5e-06  Score=71.57  Aligned_cols=131  Identities=19%  Similarity=0.133  Sum_probs=82.4

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+.......+ ..+++|++|+++++. ++... ......+++|+.|+++++ .++... ...+..++
T Consensus        40 ~~L~~L~Ls--~n~i~~~~~~~~-~~l~~L~~L~L~~N~-l~~i~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~~~~l~  112 (229)
T 3e6j_A           40 TNAQILYLH--DNQITKLEPGVF-DSLINLKELYLGSNQ-LGALP-VGVFDSLTQLTVLDLGTN-QLTVLP-SAVFDRLV  112 (229)
T ss_dssp             TTCSEEECC--SSCCCCCCTTTT-TTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCT
T ss_pred             CCCCEEEcC--CCccCccCHHHh-hCccCCcEEECCCCC-CCCcC-hhhcccCCCcCEEECCCC-cCCccC-hhHhCcch
Confidence            789999998  444443221122 347889999999863 32211 122244789999999884 444211 11234589


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCV  248 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~  248 (374)
                      +|++|+++++.  +.  .+..-...+++|+.|+++++. +..... .....+++|+.|++++++
T Consensus       113 ~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~~-~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A          113 HLKELFMCCNK--LT--ELPRGIERLTHLTHLALDQNQ-LKSIPH-GAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             TCCEEECCSSC--CC--SCCTTGGGCTTCSEEECCSSC-CCCCCT-TTTTTCTTCCEEECTTSC
T ss_pred             hhCeEeccCCc--cc--ccCcccccCCCCCEEECCCCc-CCccCH-HHHhCCCCCCEEEeeCCC
Confidence            99999999854  33  222223578999999998854 443211 234567999999999954

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.61  E-value=1.3e-05  Score=76.49  Aligned_cols=102  Identities=20%  Similarity=0.170  Sum_probs=50.1

Q ss_pred             CCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCC
Q 017279          159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPD  238 (374)
Q Consensus       159 ~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  238 (374)
                      .|+.|+++++ .++.  ++. ...+++|+.|+++++.  +.  .++.....+++|+.|+++++. ++.  +. ....+++
T Consensus       442 ~L~~L~Ls~n-~l~~--lp~-~~~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp-~l~~l~~  509 (567)
T 1dce_A          442 DVRVLHLAHK-DLTV--LCH-LEQLLLVTHLDLSHNR--LR--ALPPALAALRCLEVLQASDNA-LEN--VD-GVANLPR  509 (567)
T ss_dssp             TCSEEECTTS-CCSS--CCC-GGGGTTCCEEECCSSC--CC--CCCGGGGGCTTCCEEECCSSC-CCC--CG-GGTTCSS
T ss_pred             CceEEEecCC-CCCC--CcC-ccccccCcEeecCccc--cc--ccchhhhcCCCCCEEECCCCC-CCC--Cc-ccCCCCC
Confidence            5666666653 3332  222 3345666666666543  22  222233356666666666543 332  12 2334566


Q ss_pred             CCeeecCCCCCCCHHH-HHHHHhcCCCCceEecCCCC
Q 017279          239 LRSLDLCGCVCITDDS-VIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       239 L~~L~l~~~~~l~~~~-l~~l~~~~~~L~~L~l~~~~  274 (374)
                      |+.|++++| .++... ...+ ..+++|+.|+++++.
T Consensus       510 L~~L~Ls~N-~l~~~~~p~~l-~~l~~L~~L~L~~N~  544 (567)
T 1dce_A          510 LQELLLCNN-RLQQSAAIQPL-VSCPRLVLLNLQGNS  544 (567)
T ss_dssp             CCEEECCSS-CCCSSSTTGGG-GGCTTCCEEECTTSG
T ss_pred             CcEEECCCC-CCCCCCCcHHH-hcCCCCCEEEecCCc
Confidence            666666663 343221 1122 236666666666653

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=97.54  E-value=1.8e-05  Score=67.24  Aligned_cols=40  Identities=15%  Similarity=0.312  Sum_probs=36.2

Q ss_pred             CccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhcc
Q 017279           41 TEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICLG   80 (374)
Q Consensus        41 ~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~~   80 (374)
                      ..|+.||+|++.+||+||+.+|++++++|||+|+.++...
T Consensus         3 ~~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr~Wr~la~D~   42 (312)
T 3l2o_B            3 STLTRLPIDVQLYILSFLSPHDLCQLGSTNHYWNETVRDP   42 (312)
T ss_dssp             CHHHHSCHHHHHHHHHTSCHHHHHHHHTTCHHHHHHHTCH
T ss_pred             chhHhCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhccc
Confidence            3578999999999999999999999999999999887543

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.49  E-value=3e-05  Score=63.06  Aligned_cols=83  Identities=19%  Similarity=0.070  Sum_probs=42.9

Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      ++|++|++++..  +.  .+...+..+++|+.|+++++. ++... ......+++|++|+++++ .++...... ...++
T Consensus        31 ~~l~~L~L~~n~--i~--~ip~~~~~l~~L~~L~Ls~N~-i~~i~-~~~f~~l~~L~~L~Ls~N-~l~~i~~~~-f~~l~  102 (193)
T 2wfh_A           31 RDVTELYLDGNQ--FT--LVPKELSNYKHLTLIDLSNNR-ISTLS-NQSFSNMTQLLTLILSYN-RLRCIPPRT-FDGLK  102 (193)
T ss_dssp             TTCCEEECCSSC--CC--SCCGGGGGCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCBCCTTT-TTTCT
T ss_pred             CCCCEEECCCCc--Cc--hhHHHhhcccCCCEEECCCCc-CCEeC-HhHccCCCCCCEEECCCC-ccCEeCHHH-hCCCC
Confidence            567778777643  22  111233456777777777643 33211 111234667777777774 343211111 22356


Q ss_pred             CCceEecCCCC
Q 017279          264 HLRSLGLYYCR  274 (374)
Q Consensus       264 ~L~~L~l~~~~  274 (374)
                      +|+.|+++++.
T Consensus       103 ~L~~L~L~~N~  113 (193)
T 2wfh_A          103 SLRLLSLHGND  113 (193)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCC
Confidence            67777766653

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.45  E-value=4.1e-05  Score=75.49  Aligned_cols=84  Identities=19%  Similarity=0.093  Sum_probs=42.1

Q ss_pred             hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279          181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~  260 (374)
                      ..++.|+.|+|+++.  +.  .+..-...+++|+.|+|+++. ++.  +......+++|+.|+|++| .++  .+..-..
T Consensus       221 ~~l~~L~~L~Ls~n~--l~--~l~~~~~~l~~L~~L~Ls~N~-l~~--lp~~~~~l~~L~~L~Ls~N-~l~--~lp~~~~  290 (727)
T 4b8c_D          221 YDDQLWHALDLSNLQ--IF--NISANIFKYDFLTRLYLNGNS-LTE--LPAEIKNLSNLRVLDLSHN-RLT--SLPAELG  290 (727)
T ss_dssp             -CCCCCCEEECTTSC--CS--CCCGGGGGCCSCSCCBCTTSC-CSC--CCGGGGGGTTCCEEECTTS-CCS--SCCSSGG
T ss_pred             ccCCCCcEEECCCCC--CC--CCChhhcCCCCCCEEEeeCCc-Ccc--cChhhhCCCCCCEEeCcCC-cCC--ccChhhc
Confidence            346667777776644  22  111111146677777776643 331  1122235667777777764 344  1211122


Q ss_pred             cCCCCceEecCCCC
Q 017279          261 GCPHLRSLGLYYCR  274 (374)
Q Consensus       261 ~~~~L~~L~l~~~~  274 (374)
                      .+++|+.|+|+++.
T Consensus       291 ~l~~L~~L~L~~N~  304 (727)
T 4b8c_D          291 SCFQLKYFYFFDNM  304 (727)
T ss_dssp             GGTTCSEEECCSSC
T ss_pred             CCCCCCEEECCCCC
Confidence            46667777776663

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=97.44  E-value=6.5e-05  Score=64.48  Aligned_cols=39  Identities=23%  Similarity=0.548  Sum_probs=35.9

Q ss_pred             CCccCCCCHHHHHHHhcCCCccchh-hhcccchhHHHhhh
Q 017279           40 ITEWKDIPMELLLRILSLVDEPTVI-VASGVCSGWRDAIC   78 (374)
Q Consensus        40 ~~~~~~Lp~eil~~If~~L~~~~l~-~~~~vc~~w~~~~~   78 (374)
                      ...+..||+|++..||++|+.++++ ++++|||+|+.++.
T Consensus        48 ~~~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~Wr~l~~   87 (297)
T 2e31_A           48 VEYLAELPEPLLLRVLAELPATELVQACRLVCLRWKELVD   87 (297)
T ss_dssp             CCCTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHHHHHHHT
T ss_pred             ccChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHHHHHHhc
Confidence            4578899999999999999999999 99999999998864

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.41  E-value=3.5e-06  Score=68.63  Aligned_cols=85  Identities=19%  Similarity=0.130  Sum_probs=44.8

Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      ++|++|++++..  +........+..+++|++|+++++. ++... ......+++|+.|+++++ .++..... ....++
T Consensus        29 ~~l~~L~l~~n~--i~~~~~~~~~~~l~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~~~~~-~~~~l~  102 (192)
T 1w8a_A           29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGEN-KIKEISNK-MFLGLH  102 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSC-CCCEECSS-SSTTCT
T ss_pred             CCCCEEECCCCc--CCccCCccccccCCCCCEEECCCCC-CCCcC-HhHcCCcccCCEEECCCC-cCCccCHH-HhcCCC
Confidence            477888887743  2211111123457778888887643 33211 112235677777777774 34321111 112366


Q ss_pred             CCceEecCCCC
Q 017279          264 HLRSLGLYYCR  274 (374)
Q Consensus       264 ~L~~L~l~~~~  274 (374)
                      +|++|+++++.
T Consensus       103 ~L~~L~L~~N~  113 (192)
T 1w8a_A          103 QLKTLNLYDNQ  113 (192)
T ss_dssp             TCCEEECCSSC
T ss_pred             CCCEEECCCCc
Confidence            77777777664

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.37  E-value=3e-06  Score=75.35  Aligned_cols=105  Identities=15%  Similarity=0.105  Sum_probs=58.8

Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      .+++.+.+.+.  +....+..+...|++|+.|++.++ .++... ...+.+|++|+.|.+...  +..     +...   
T Consensus       202 ~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n-~i~~I~-~~aF~~~~~L~~l~l~~n--i~~-----I~~~---  267 (329)
T 3sb4_A          202 RDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKT-NATTIP-DFTFAQKKYLLKIKLPHN--LKT-----IGQR---  267 (329)
T ss_dssp             GGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTB-CCCEEC-TTTTTTCTTCCEEECCTT--CCE-----ECTT---
T ss_pred             cccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCC-Ccceec-HhhhhCCCCCCEEECCcc--cce-----ehHH---
Confidence            44555656542  455556666666889999999873 343211 122335888999988763  221     1111   


Q ss_pred             CCCccccccccccCCCCCc-EEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279          291 NKPGIWESMKGRYDEEGLQ-SLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC  348 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~-~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C  348 (374)
                                .+..+++|+ .|++.+  .++.-.-.       ....|++|+.|++++.
T Consensus       268 ----------aF~~~~~L~~~l~l~~--~l~~I~~~-------aF~~c~~L~~l~l~~n  307 (329)
T 3sb4_A          268 ----------VFSNCGRLAGTLELPA--SVTAIEFG-------AFMGCDNLRYVLATGD  307 (329)
T ss_dssp             ----------TTTTCTTCCEEEEECT--TCCEECTT-------TTTTCTTEEEEEECSS
T ss_pred             ----------HhhCChhccEEEEEcc--cceEEchh-------hhhCCccCCEEEeCCC
Confidence                      123457787 888865  33311100       1256778888887543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=97.34  E-value=5.6e-05  Score=60.38  Aligned_cols=85  Identities=14%  Similarity=0.038  Sum_probs=46.5

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      .++|++|+++++.  +... .......+++|++|+++++. ++... ......+++|+.|+++++ .++... ......+
T Consensus        27 ~~~l~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~n~-l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELESNK--LQSL-PHGVFDKLTQLTKLSLSQNQ-IQSLP-DGVFDKLTKLTILYLHEN-KLQSLP-NGVFDKL   99 (177)
T ss_dssp             CTTCSEEECCSSC--CCCC-CTTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred             CCCCcEEEeCCCc--ccEe-CHHHhcCcccccEEECCCCc-ceEeC-hhHccCCCccCEEECCCC-CccccC-HHHhhCC
Confidence            4678888888744  2211 11123456788888887653 33211 112235677888888874 343211 1122346


Q ss_pred             CCCceEecCCCC
Q 017279          263 PHLRSLGLYYCR  274 (374)
Q Consensus       263 ~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++.
T Consensus       100 ~~L~~L~l~~N~  111 (177)
T 2o6r_A          100 TQLKELALDTNQ  111 (177)
T ss_dssp             TTCCEEECCSSC
T ss_pred             cccCEEECcCCc
Confidence            777777777764

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=97.31  E-value=1.1e-05  Score=71.65  Aligned_cols=202  Identities=14%  Similarity=0.121  Sum_probs=105.3

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCC----------H---------HHHHHHHhc--------
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLS----------D---------RSLYALAHG--------  156 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~----------~---------~~~~~l~~~--------  156 (374)
                      .++++.|.+.   ..+....+..+...+++|+.|+|+++. +.          .         .........        
T Consensus        24 ~~~l~~L~l~---g~i~~~~~~~l~~~l~~L~~LdLs~n~-i~~~~~~~~~~~~~~~~~~~~~~I~~~aF~~~~~~~~~g   99 (329)
T 3sb4_A           24 ANSITHLTLT---GKLNAEDFRHLRDEFPSLKVLDISNAE-IKMYSGKAGTYPNGKFYIYMANFVPAYAFSNVVNGVTKG   99 (329)
T ss_dssp             HHHCSEEEEE---EEECHHHHHHHHHSCTTCCEEEEEEEE-ECCEEESSSSSGGGCCEEECTTEECTTTTEEEETTEEEE
T ss_pred             hCceeEEEEe---ccccHHHHHHHHHhhccCeEEecCcce-eEEecCccccccccccccccccccCHHHhcccccccccc
Confidence            4578899998   245666677776658899999998752 22          0         000111234        


Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCcc-CccHHHHHHHHhcCCCCCEEeccC---------------
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVK-AATDYALQAIGRNCNQLQSLNLGW---------------  220 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~-~~~~~~~~~l~~~~~~L~~L~l~~---------------  220 (374)
                      |++|++|.+..  .+...+- ..+..|++|+.+++..... .+....    +..|.++..+.+..               
T Consensus       100 ~~~L~~l~L~~--~i~~I~~-~aF~~~~~L~~l~l~~n~i~~i~~~a----F~~~~~l~~l~~~~~~~~~~~~~i~~~~f  172 (329)
T 3sb4_A          100 KQTLEKVILSE--KIKNIED-AAFKGCDNLKICQIRKKTAPNLLPEA----LADSVTAIFIPLGSSDAYRFKNRWEHFAF  172 (329)
T ss_dssp             CTTCCC-CBCT--TCCEECT-TTTTTCTTCCEEEBCCSSCCEECTTS----SCTTTCEEEECTTCTHHHHTSTTTTTSCE
T ss_pred             cCCCcEEECCc--cccchhH-HHhhcCcccceEEcCCCCccccchhh----hcCCCceEEecCcchhhhhcccccccccc
Confidence            77888888865  2221111 1223578888888865321 011111    11233333333221               


Q ss_pred             --------------CCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHh
Q 017279          221 --------------CEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQ  286 (374)
Q Consensus       221 --------------~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~  286 (374)
                                    ...+. ..+....-...++..+.+.+  .+....+..+...|++|+.|++.++. ++.-+-     
T Consensus       173 ~~~~~L~~~i~~~~~~~l~-~~~~~~~~~~~~~~~l~~~~--~l~~~~~~~l~~~~~~L~~l~L~~n~-i~~I~~-----  243 (329)
T 3sb4_A          173 IEGEPLETTIQVGAMGKLE-DEIMKAGLQPRDINFLTIEG--KLDNADFKLIRDYMPNLVSLDISKTN-ATTIPD-----  243 (329)
T ss_dssp             EESCCCEEEEEECTTCCHH-HHHHHTTCCGGGCSEEEEEE--CCCHHHHHHHHHHCTTCCEEECTTBC-CCEECT-----
T ss_pred             ccccccceeEEecCCCcHH-HHHhhcccCccccceEEEee--eecHHHHHHHHHhcCCCeEEECCCCC-cceecH-----
Confidence                          11100 00011111234556666665  35556666666679999999998753 322111     


Q ss_pred             cCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc-eEEecC
Q 017279          287 SGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH-SLVMSG  347 (374)
Q Consensus       287 ~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~-~L~ls~  347 (374)
                                   ..+..+++|+.|++.+.  ++.-.-.       ....|++|+ .|++..
T Consensus       244 -------------~aF~~~~~L~~l~l~~n--i~~I~~~-------aF~~~~~L~~~l~l~~  283 (329)
T 3sb4_A          244 -------------FTFAQKKYLLKIKLPHN--LKTIGQR-------VFSNCGRLAGTLELPA  283 (329)
T ss_dssp             -------------TTTTTCTTCCEEECCTT--CCEECTT-------TTTTCTTCCEEEEECT
T ss_pred             -------------hhhhCCCCCCEEECCcc--cceehHH-------HhhCChhccEEEEEcc
Confidence                         11335689999999872  4321111       125778888 887764

>1fs1_A SKP2 F-BOX, cyclin A/CDK2-associated P19; F-BOX, LRR, leucine-rich repeat, SCF, ubiquitin, ubiquitin protein ligase; 1.80A {Homo sapiens} SCOP: a.158.1.1 PDB: 1ldk_E

Probab=97.29  E-value=1.6e-05  Score=49.53  Aligned_cols=43  Identities=12%  Similarity=-0.052  Sum_probs=31.6

Q ss_pred             cCCCcCHHHHHHHHHHHHHhccccCCCCc--cccCCccCCccCCC
Q 017279            4 EATNLSSEDLNLCFEKMMMAGAGADRAGG--VKMDGVVITEWKDI   46 (374)
Q Consensus         4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~L   46 (374)
                      ....||+|++.+||+||+..++.+++.||  |.........|..+
T Consensus         8 ~~~~LP~eil~~I~~~L~~~dl~~~~~Vck~w~~~~~~~~lW~~l   52 (53)
T 1fs1_A            8 SWDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASDESLWQTL   52 (53)
T ss_dssp             -CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTCGGGC---
T ss_pred             CHHHCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCChHHHHhc
Confidence            45689999999999999999999999999  44333344455543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.18  E-value=7.6e-05  Score=71.26  Aligned_cols=125  Identities=21%  Similarity=0.121  Sum_probs=82.5

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ..|+.|+++  .+.++..  .. ...+++|+.|+++++ .++.  +......+++|+.|+|+++ .++.  ++ ....++
T Consensus       441 ~~L~~L~Ls--~n~l~~l--p~-~~~l~~L~~L~Ls~N-~l~~--lp~~~~~l~~L~~L~Ls~N-~l~~--lp-~l~~l~  508 (567)
T 1dce_A          441 ADVRVLHLA--HKDLTVL--CH-LEQLLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALEN--VD-GVANLP  508 (567)
T ss_dssp             TTCSEEECT--TSCCSSC--CC-GGGGTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCC--CG-GGTTCS
T ss_pred             cCceEEEec--CCCCCCC--cC-ccccccCcEeecCcc-cccc--cchhhhcCCCCCEEECCCC-CCCC--Cc-ccCCCC
Confidence            368999999  4455431  12 345889999999997 4441  2222345899999999984 5543  33 345689


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCeeec
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDV--GVMNLAYGCPDLRSLDL  244 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L~l  244 (374)
                      +|+.|+++++.  +...........+++|+.|+++++. ++..  ....+...+|+|+.|++
T Consensus       509 ~L~~L~Ls~N~--l~~~~~p~~l~~l~~L~~L~L~~N~-l~~~~~~~~~l~~~lp~L~~L~l  567 (567)
T 1dce_A          509 RLQELLLCNNR--LQQSAAIQPLVSCPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSILT  567 (567)
T ss_dssp             SCCEEECCSSC--CCSSSTTGGGGGCTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEEEC
T ss_pred             CCcEEECCCCC--CCCCCCcHHHhcCCCCCEEEecCCc-CCCCccHHHHHHHHCcccCccCC
Confidence            99999999854  4332212334569999999998864 3321  12344456899999864

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=97.15  E-value=0.00014  Score=71.71  Aligned_cols=117  Identities=17%  Similarity=0.073  Sum_probs=76.3

Q ss_pred             HhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279          154 AHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA  233 (374)
Q Consensus       154 ~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~  233 (374)
                      ...+++|+.|+|+++. +..  ++.-...+++|++|+|+++.  +.  .+...+..+++|+.|+|+++. ++.  +....
T Consensus       220 ~~~l~~L~~L~Ls~n~-l~~--l~~~~~~l~~L~~L~Ls~N~--l~--~lp~~~~~l~~L~~L~Ls~N~-l~~--lp~~~  289 (727)
T 4b8c_D          220 KYDDQLWHALDLSNLQ-IFN--ISANIFKYDFLTRLYLNGNS--LT--ELPAEIKNLSNLRVLDLSHNR-LTS--LPAEL  289 (727)
T ss_dssp             --CCCCCCEEECTTSC-CSC--CCGGGGGCCSCSCCBCTTSC--CS--CCCGGGGGGTTCCEEECTTSC-CSS--CCSSG
T ss_pred             hccCCCCcEEECCCCC-CCC--CChhhcCCCCCCEEEeeCCc--Cc--ccChhhhCCCCCCEEeCcCCc-CCc--cChhh
Confidence            3457899999999853 331  22222368999999999865  43  233334578999999999865 442  22223


Q ss_pred             hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHH
Q 017279          234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSL  284 (374)
Q Consensus       234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l  284 (374)
                      ..+++|++|++++| .++  .+..-+..+++|+.|+|+++. ++......+
T Consensus       290 ~~l~~L~~L~L~~N-~l~--~lp~~~~~l~~L~~L~L~~N~-l~~~~p~~~  336 (727)
T 4b8c_D          290 GSCFQLKYFYFFDN-MVT--TLPWEFGNLCNLQFLGVEGNP-LEKQFLKIL  336 (727)
T ss_dssp             GGGTTCSEEECCSS-CCC--CCCSSTTSCTTCCCEECTTSC-CCSHHHHHH
T ss_pred             cCCCCCCEEECCCC-CCC--ccChhhhcCCCccEEeCCCCc-cCCCChHHH
Confidence            56799999999995 454  121113358899999999986 665444444

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=97.09  E-value=3.6e-05  Score=62.60  Aligned_cols=108  Identities=19%  Similarity=0.157  Sum_probs=69.7

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      .++|++|+++++ .++.  ++.....+++|++|+++++.  +.... ...+..+++|++|+++++. ++.... .....+
T Consensus        30 ~~~l~~L~L~~n-~i~~--ip~~~~~l~~L~~L~Ls~N~--i~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~~-~~f~~l  101 (193)
T 2wfh_A           30 PRDVTELYLDGN-QFTL--VPKELSNYKHLTLIDLSNNR--ISTLS-NQSFSNMTQLLTLILSYNR-LRCIPP-RTFDGL  101 (193)
T ss_dssp             CTTCCEEECCSS-CCCS--CCGGGGGCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCBCCT-TTTTTC
T ss_pred             CCCCCEEECCCC-cCch--hHHHhhcccCCCEEECCCCc--CCEeC-HhHccCCCCCCEEECCCCc-cCEeCH-HHhCCC
Confidence            368999999984 4542  22344568999999999854  33211 1223468999999999854 443211 123467


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++ .++... ......+++|+.|++.+++
T Consensus       102 ~~L~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~  137 (193)
T 2wfh_A          102 KSLRLLSLHGN-DISVVP-EGAFNDLSALSHLAIGANP  137 (193)
T ss_dssp             TTCCEEECCSS-CCCBCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CCCCEEECCCC-CCCeeC-hhhhhcCccccEEEeCCCC
Confidence            99999999995 454211 1122347788888888765

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=97.07  E-value=0.00013  Score=67.69  Aligned_cols=41  Identities=22%  Similarity=0.396  Sum_probs=37.6

Q ss_pred             cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      ..+.+..||.|++.+||+||+.++++++++|||+|++++..
T Consensus        11 ~~d~~~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (464)
T 3v7d_B           11 KRDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIRK   51 (464)
T ss_dssp             CCCHHHHSCHHHHHHHHTTSCHHHHHHHHTTCHHHHHHHTT
T ss_pred             ccCChHHCCHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHcC
Confidence            45789999999999999999999999999999999988754

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=97.02  E-value=1.5e-05  Score=64.87  Aligned_cols=109  Identities=19%  Similarity=0.114  Sum_probs=69.7

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      ++|+.|+++++ .+...........+++|++|+++++.  +.... ...+..+++|+.|+++++. ++.... .....++
T Consensus        29 ~~l~~L~l~~n-~i~~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~~~~-~~~~~l~  102 (192)
T 1w8a_A           29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ--LTGIE-PNAFEGASHIQELQLGENK-IKEISN-KMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC--CCCBC-TTTTTTCTTCCEEECCSCC-CCEECS-SSSTTCT
T ss_pred             CCCCEEECCCC-cCCccCCccccccCCCCCEEECCCCC--CCCcC-HhHcCCcccCCEEECCCCc-CCccCH-HHhcCCC
Confidence            48999999984 44432111124568999999999854  33211 2234468999999999854 443211 1134579


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|++|+++++ .++..... ....+++|+.|+++++.
T Consensus       103 ~L~~L~L~~N-~l~~~~~~-~~~~l~~L~~L~L~~N~  137 (192)
T 1w8a_A          103 QLKTLNLYDN-QISCVMPG-SFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECCSS-CCCEECTT-SSTTCTTCCEEECTTCC
T ss_pred             CCCEEECCCC-cCCeeCHH-HhhcCCCCCEEEeCCCC
Confidence            9999999995 45422111 22347889999998875

>2ovr_B FBW7, F-BOX/WD repeat protein 7, F-box PROT; WD40 domains, double phosphorylation, transcription-C complex; HET: TPO; 2.50A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1 PDB: 2ovp_B* 2ovq_B*

Probab=96.83  E-value=0.0006  Score=62.81  Aligned_cols=40  Identities=25%  Similarity=0.350  Sum_probs=37.0

Q ss_pred             cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~   78 (374)
                      ..+.+..||.|++.+||+||+.+++.++++|||+|+.++.
T Consensus        15 ~~d~~~~lp~e~~~~i~~~l~~~~l~~~~~v~~~~~~~~~   54 (445)
T 2ovr_B           15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAE   54 (445)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHT
T ss_pred             cCChhHHCCHHHHHHHHHhCCHHHHHHHHHHhHHHHhhcC
Confidence            4678999999999999999999999999999999998764

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=96.79  E-value=0.00011  Score=58.77  Aligned_cols=109  Identities=13%  Similarity=0.038  Sum_probs=68.5

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      .++|+.|+++++ .+.... ......+++|++|+++++.  +... ....+..+++|+.|+++++. ++... ......+
T Consensus        27 ~~~l~~L~l~~n-~l~~~~-~~~~~~l~~L~~L~l~~n~--l~~~-~~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l   99 (177)
T 2o6r_A           27 PSSATRLELESN-KLQSLP-HGVFDKLTQLTKLSLSQNQ--IQSL-PDGVFDKLTKLTILYLHENK-LQSLP-NGVFDKL   99 (177)
T ss_dssp             CTTCSEEECCSS-CCCCCC-TTTTTTCTTCSEEECCSSC--CCCC-CTTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTC
T ss_pred             CCCCcEEEeCCC-cccEeC-HHHhcCcccccEEECCCCc--ceEe-ChhHccCCCccCEEECCCCC-ccccC-HHHhhCC
Confidence            478999999984 444211 1123468999999999854  3311 11223468999999998854 44211 1223467


Q ss_pred             CCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          237 PDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++ .++... ......+++|+.|+++++.
T Consensus       100 ~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~  135 (177)
T 2o6r_A          100 TQLKELALDTN-QLKSVP-DGIFDRLTSLQKIWLHTNP  135 (177)
T ss_dssp             TTCCEEECCSS-CCSCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             cccCEEECcCC-cceEeC-HHHhcCCcccCEEEecCCC
Confidence            99999999995 454211 1222346778888887775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.78  E-value=0.0023  Score=54.45  Aligned_cols=84  Identities=26%  Similarity=0.286  Sum_probs=42.5

Q ss_pred             hcCCCCcEEeecCCCCCCH-HHHHHHHhcCCCCcEEEcCCCccCccHH-HHHHHHhcCCCCCEEeccCCCCCCH------
Q 017279          155 HGCPNLTRLNISGCTSFSD-HALAYLCGFCRKLKILNLCGCVKAATDY-ALQAIGRNCNQLQSLNLGWCEDVGD------  226 (374)
Q Consensus       155 ~~~~~L~~L~L~~~~~~~~-~~~~~l~~~~~~L~~L~L~~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~~~~------  226 (374)
                      ..+++|+.|+|+++ .+.. .+++.....+++|+.|+|++..  +.+. .+..+. .+ +|++|++.++. +..      
T Consensus       167 ~~l~~L~~L~Ls~N-~l~~l~~l~~~~~~l~~L~~L~Ls~N~--i~~~~~l~~l~-~l-~L~~L~L~~Np-l~~~~~~~~  240 (267)
T 3rw6_A          167 ENIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE--LKSERELDKIK-GL-KLEELWLDGNS-LCDTFRDQS  240 (267)
T ss_dssp             HHCTTCCEEECTTS-CCCCCGGGTTHHHHSTTCCEEECTTSC--CCSGGGGGGGT-TS-CCSEEECTTST-TGGGCSSHH
T ss_pred             hhCCCCCEEECCCC-CCCCCccchhHHhhCCCCCEEECCCCc--cCCchhhhhcc-cC-CcceEEccCCc-CccccCcch
Confidence            44667777777663 3332 1223333456777777776633  3321 222221 12 67777776654 321      


Q ss_pred             HHHHHHHhcCCCCCeeec
Q 017279          227 VGVMNLAYGCPDLRSLDL  244 (374)
Q Consensus       227 ~~~~~l~~~~~~L~~L~l  244 (374)
                      .....+...+|+|+.|+=
T Consensus       241 ~y~~~il~~~P~L~~LDg  258 (267)
T 3rw6_A          241 TYISAIRERFPKLLRLDG  258 (267)
T ss_dssp             HHHHHHHHHCTTCCEESS
T ss_pred             hHHHHHHHHCcccCeECC
Confidence            112244556777777753

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=96.63  E-value=0.0029  Score=53.83  Aligned_cols=89  Identities=22%  Similarity=0.177  Sum_probs=58.6

Q ss_pred             HHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhcCCCCCEEeccCCCCCCHH-HHHHHHhcCCCCCeeecCCCCCCCH--
Q 017279          177 AYLCGFCRKLKILNLCGCVKAATD-YALQAIGRNCNQLQSLNLGWCEDVGDV-GVMNLAYGCPDLRSLDLCGCVCITD--  252 (374)
Q Consensus       177 ~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~-~~~~l~~~~~~L~~L~l~~~~~l~~--  252 (374)
                      ..+...+|+|+.|+|++..  +.. ..+..+...+++|+.|+|+++. +.+. .+..+ ..+ +|++|++++++ ++.  
T Consensus       163 ~i~~~~l~~L~~L~Ls~N~--l~~l~~l~~~~~~l~~L~~L~Ls~N~-i~~~~~l~~l-~~l-~L~~L~L~~Np-l~~~~  236 (267)
T 3rw6_A          163 RIIEENIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGL-KLEELWLDGNS-LCDTF  236 (267)
T ss_dssp             HHHHHHCTTCCEEECTTSC--CCCCGGGTTHHHHSTTCCEEECTTSC-CCSGGGGGGG-TTS-CCSEEECTTST-TGGGC
T ss_pred             HHHHhhCCCCCEEECCCCC--CCCCccchhHHhhCCCCCEEECCCCc-cCCchhhhhc-ccC-CcceEEccCCc-Ccccc
Confidence            3344568999999999854  433 2344455679999999998854 5443 22222 223 89999999954 542  


Q ss_pred             ----HHHHHHHhcCCCCceEecC
Q 017279          253 ----DSVIALANGCPHLRSLGLY  271 (374)
Q Consensus       253 ----~~l~~l~~~~~~L~~L~l~  271 (374)
                          .....+...+|+|+.|+=.
T Consensus       237 ~~~~~y~~~il~~~P~L~~LDg~  259 (267)
T 3rw6_A          237 RDQSTYISAIRERFPKLLRLDGH  259 (267)
T ss_dssp             SSHHHHHHHHHHHCTTCCEESSC
T ss_pred             CcchhHHHHHHHHCcccCeECCc
Confidence                2334566679999999743

>1p22_A F-BOX/WD-repeat protein 1A; ubiquitination, degradation, signaling protein; HET: SEP; 2.95A {Homo sapiens} SCOP: a.158.1.1 b.69.4.1

Probab=96.61  E-value=0.00031  Score=64.61  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=37.3

Q ss_pred             cCCccCCCCHH----HHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           39 VITEWKDIPME----LLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        39 ~~~~~~~Lp~e----il~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      ..+++..||+|    ++.+||+||+.+++.++++|||+|+.++..
T Consensus         7 ~~d~~~~lp~e~~~~~~~~i~~~l~~~~l~~~~~v~~~w~~~~~~   51 (435)
T 1p22_A            7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD   51 (435)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred             hcChHHHCCcchHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcC
Confidence            46788999999    999999999999999999999999987643

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=96.61  E-value=0.00055  Score=54.47  Aligned_cols=83  Identities=12%  Similarity=0.036  Sum_probs=48.6

Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      ++|+.|+++++. +.... ......+++|+.|+++++ .++... ......+++|+.|+++++. ++.-..         
T Consensus        33 ~~L~~L~Ls~N~-l~~~~-~~~~~~l~~L~~L~Ls~N-~l~~i~-~~~~~~l~~L~~L~L~~N~-l~~l~~---------   98 (174)
T 2r9u_A           33 TDKQRLWLNNNQ-ITKLE-PGVFDHLVNLQQLYFNSN-KLTAIP-TGVFDKLTQLTQLDLNDNH-LKSIPR---------   98 (174)
T ss_dssp             TTCSEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT---------
T ss_pred             CCCcEEEeCCCC-ccccC-HHHhcCCcCCCEEECCCC-CCCccC-hhHhCCcchhhEEECCCCc-cceeCH---------
Confidence            678888888754 33211 122345788888888884 454211 1122347888888888774 432000         


Q ss_pred             CCCccccccccccCCCCCcEEecCCC
Q 017279          291 NKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                               ..+..+++|+.|+++++
T Consensus        99 ---------~~~~~l~~L~~L~L~~N  115 (174)
T 2r9u_A           99 ---------GAFDNLKSLTHIYLYNN  115 (174)
T ss_dssp             ---------TTTTTCTTCSEEECCSS
T ss_pred             ---------HHhccccCCCEEEeCCC
Confidence                     01234578888888874

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=96.52  E-value=0.00067  Score=53.69  Aligned_cols=84  Identities=14%  Similarity=0.018  Sum_probs=48.3

Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGV  289 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~  289 (374)
                      .++|+.|+++++. ++... ......+++|+.|+++++ .++... ......+++|+.|+++++. ++....        
T Consensus        29 ~~~l~~L~L~~N~-i~~~~-~~~~~~l~~L~~L~Ls~N-~l~~l~-~~~f~~l~~L~~L~L~~N~-l~~~~~--------   95 (170)
T 3g39_A           29 PTTTQVLYLYDNQ-ITKLE-PGVFDRLTQLTRLDLDNN-QLTVLP-AGVFDKLTQLTQLSLNDNQ-LKSIPR--------   95 (170)
T ss_dssp             CTTCSEEECCSSC-CCCCC-TTTTTTCTTCSEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC-CCCCCT--------
T ss_pred             CCCCcEEEcCCCc-CCccC-hhhhcCcccCCEEECCCC-CcCccC-hhhccCCCCCCEEECCCCc-cCEeCH--------
Confidence            3678888888753 33211 112345788888888884 454211 1222357788888888774 432000        


Q ss_pred             CCCCccccccccccCCCCCcEEecCCC
Q 017279          290 KNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       290 ~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                                ..+..+++|+.|+++++
T Consensus        96 ----------~~~~~l~~L~~L~L~~N  112 (170)
T 3g39_A           96 ----------GAFDNLKSLTHIWLLNN  112 (170)
T ss_dssp             ----------TTTTTCTTCCEEECCSS
T ss_pred             ----------HHhcCCCCCCEEEeCCC
Confidence                      01234578888888873

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=95.11  E-value=0.0017  Score=51.30  Aligned_cols=103  Identities=17%  Similarity=0.095  Sum_probs=63.8

Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      .+.+++++. .++..  +.  ...++|++|++++..  +.... ...+..+++|++|+++++. ++... ......+++|
T Consensus        11 ~~~l~~s~n-~l~~i--p~--~~~~~l~~L~L~~N~--i~~~~-~~~~~~l~~L~~L~Ls~N~-l~~l~-~~~f~~l~~L   80 (170)
T 3g39_A           11 GTTVDCSGK-SLASV--PT--GIPTTTQVLYLYDNQ--ITKLE-PGVFDRLTQLTRLDLDNNQ-LTVLP-AGVFDKLTQL   80 (170)
T ss_dssp             TTEEECTTS-CCSSC--CS--CCCTTCSEEECCSSC--CCCCC-TTTTTTCTTCSEEECCSSC-CCCCC-TTTTTTCTTC
T ss_pred             CCEEEeCCC-CcCcc--Cc--cCCCCCcEEEcCCCc--CCccC-hhhhcCcccCCEEECCCCC-cCccC-hhhccCCCCC
Confidence            456777652 33321  10  124789999999854  33211 2233468999999999864 44311 1223568999


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +.|+++++ .++... ......+++|+.|+++++.
T Consensus        81 ~~L~L~~N-~l~~~~-~~~~~~l~~L~~L~L~~N~  113 (170)
T 3g39_A           81 TQLSLNDN-QLKSIP-RGAFDNLKSLTHIWLLNNP  113 (170)
T ss_dssp             CEEECCSS-CCCCCC-TTTTTTCTTCCEEECCSSC
T ss_pred             CEEECCCC-ccCEeC-HHHhcCCCCCCEEEeCCCC
Confidence            99999995 454211 1223458999999999875

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=95.01  E-value=0.003  Score=50.13  Aligned_cols=85  Identities=15%  Similarity=0.057  Sum_probs=56.5

Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcC
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGC  262 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~  262 (374)
                      .++|++|++++..  +.... ...+..+++|+.|+++++. ++... ......+++|+.|+++++ .++... ......+
T Consensus        32 ~~~L~~L~Ls~N~--l~~~~-~~~~~~l~~L~~L~Ls~N~-l~~i~-~~~~~~l~~L~~L~L~~N-~l~~l~-~~~~~~l  104 (174)
T 2r9u_A           32 PTDKQRLWLNNNQ--ITKLE-PGVFDHLVNLQQLYFNSNK-LTAIP-TGVFDKLTQLTQLDLNDN-HLKSIP-RGAFDNL  104 (174)
T ss_dssp             CTTCSEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCCCC-TTTTTTCTTCCEEECCSS-CCCCCC-TTTTTTC
T ss_pred             CCCCcEEEeCCCC--ccccC-HHHhcCCcCCCEEECCCCC-CCccC-hhHhCCcchhhEEECCCC-ccceeC-HHHhccc
Confidence            3789999999854  33211 2234568999999999864 44311 122346899999999995 554211 1223358


Q ss_pred             CCCceEecCCCC
Q 017279          263 PHLRSLGLYYCR  274 (374)
Q Consensus       263 ~~L~~L~l~~~~  274 (374)
                      ++|+.|+++++.
T Consensus       105 ~~L~~L~L~~N~  116 (174)
T 2r9u_A          105 KSLTHIYLYNNP  116 (174)
T ss_dssp             TTCSEEECCSSC
T ss_pred             cCCCEEEeCCCC
Confidence            999999999876

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=94.68  E-value=0.0011  Score=60.35  Aligned_cols=37  Identities=16%  Similarity=0.225  Sum_probs=19.9

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCC
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGC  348 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C  348 (374)
                      +.++++|+.+.|..  +++.-.-       .....| +|+.|.+++.
T Consensus       319 F~~c~~L~~l~lp~--~l~~I~~-------~aF~~~-~L~~l~l~~n  355 (401)
T 4fdw_A          319 LGGNRKVTQLTIPA--NVTQINF-------SAFNNT-GIKEVKVEGT  355 (401)
T ss_dssp             TTTCCSCCEEEECT--TCCEECT-------TSSSSS-CCCEEEECCS
T ss_pred             hcCCCCccEEEECc--cccEEcH-------HhCCCC-CCCEEEEcCC
Confidence            34557777777754  2321000       012466 7777777765

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=93.95  E-value=0.015  Score=51.59  Aligned_cols=65  Identities=15%  Similarity=0.137  Sum_probs=40.5

Q ss_pred             HhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          207 GRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       207 ~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ...+++|+.|+|++...+.... ...+..+++|+.|+|+++ .++... ...+..+++|+.|+|+++.
T Consensus        27 l~~~~~L~~L~l~~~n~l~~~~-~~~~~~l~~L~~L~l~~N-~l~~~~-~~~~~~l~~L~~L~l~~N~   91 (347)
T 2ifg_A           27 LPGAENLTELYIENQQHLQHLE-LRDLRGLGELRNLTIVKS-GLRFVA-PDAFHFTPRLSRLNLSFNA   91 (347)
T ss_dssp             SCSCSCCSEEECCSCSSCCEEC-GGGSCSCCCCSEEECCSS-CCCEEC-TTGGGSCSCCCEEECCSSC
T ss_pred             CCCCCCeeEEEccCCCCCCCcC-hhHhccccCCCEEECCCC-ccceeC-HHHhcCCcCCCEEeCCCCc
Confidence            4456789999997523344321 122346788999999985 554321 1222358889999988875

>2e31_A FBS1, F-box only protein 2; ubiquitin, SCF, ubiquitin ligase, FBS1; 2.40A {Mus musculus} PDB: 2e32_A

Probab=91.78  E-value=0.015  Score=49.94  Aligned_cols=31  Identities=13%  Similarity=-0.034  Sum_probs=27.7

Q ss_pred             cCCCcCHHHHHHHHHHHHHhccc-cCCCCccc
Q 017279            4 EATNLSSEDLNLCFEKMMMAGAG-ADRAGGVK   34 (374)
Q Consensus         4 ~~~~lp~e~~~~i~~~l~~~~~~-~~~~~~~~   34 (374)
                      ....||+|++.+||++|+..++. +|+.||..
T Consensus        50 ~~~~LP~ell~~Il~~Lp~~~L~~r~~~VCk~   81 (297)
T 2e31_A           50 YLAELPEPLLLRVLAELPATELVQACRLVCLR   81 (297)
T ss_dssp             CTTSSCHHHHHHHHHTSCHHHHHHTGGGTCHH
T ss_pred             ChhhCCHHHHHHHHHcCCHHHHHHHHHHHhHH
Confidence            34589999999999999999999 99999943

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=90.91  E-value=0.018  Score=50.95  Aligned_cols=102  Identities=17%  Similarity=0.022  Sum_probs=61.1

Q ss_pred             EEeecCCCCCCHHHHHHHHhcCCCCcEEEcCC-CccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279          162 RLNISGCTSFSDHALAYLCGFCRKLKILNLCG-CVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR  240 (374)
Q Consensus       162 ~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~-~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  240 (374)
                      .+++++...++.  ++. ...+++|++|+|++ ..  +.... ...+..+++|+.|+|+++. +.... ...+..+++|+
T Consensus        12 ~v~~~~~n~l~~--ip~-l~~~~~L~~L~l~~~n~--l~~~~-~~~~~~l~~L~~L~l~~N~-l~~~~-~~~~~~l~~L~   83 (347)
T 2ifg_A           12 GLRCTRDGALDS--LHH-LPGAENLTELYIENQQH--LQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLS   83 (347)
T ss_dssp             CEECCSSCCCTT--TTT-SCSCSCCSEEECCSCSS--CCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCC
T ss_pred             EEEcCCCCCCCc--cCC-CCCCCCeeEEEccCCCC--CCCcC-hhHhccccCCCEEECCCCc-cceeC-HHHhcCCcCCC
Confidence            345544213433  333 45678999999985 33  22211 1224468999999999864 54421 22335789999


Q ss_pred             eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .|+|+++ .++... ..+.... .|+.|++.++.
T Consensus        84 ~L~l~~N-~l~~~~-~~~~~~~-~L~~l~l~~N~  114 (347)
T 2ifg_A           84 RLNLSFN-ALESLS-WKTVQGL-SLQELVLSGNP  114 (347)
T ss_dssp             EEECCSS-CCSCCC-STTTCSC-CCCEEECCSSC
T ss_pred             EEeCCCC-ccceeC-HHHcccC-CceEEEeeCCC
Confidence            9999995 554211 1122223 39999998875

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=90.84  E-value=0.0028  Score=57.60  Aligned_cols=152  Identities=14%  Similarity=0.124  Sum_probs=70.3

Q ss_pred             cCCCCcEEeecCC--CCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHH
Q 017279          156 GCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLA  233 (374)
Q Consensus       156 ~~~~L~~L~L~~~--~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~  233 (374)
                      .|++|+.+++..+  ..+....+     .+.+|+.+.+...-..+...    .+..|++|+.+.+...  +...+-.++.
T Consensus       178 ~c~~L~~l~l~~n~l~~I~~~aF-----~~~~L~~l~lp~~l~~I~~~----aF~~~~~L~~l~l~~~--l~~I~~~aF~  246 (401)
T 4fdw_A          178 YCYNLKKADLSKTKITKLPASTF-----VYAGIEEVLLPVTLKEIGSQ----AFLKTSQLKTIEIPEN--VSTIGQEAFR  246 (401)
T ss_dssp             TCTTCCEEECTTSCCSEECTTTT-----TTCCCSEEECCTTCCEECTT----TTTTCTTCCCEECCTT--CCEECTTTTT
T ss_pred             CcccCCeeecCCCcceEechhhE-----eecccCEEEeCCchheehhh----HhhCCCCCCEEecCCC--ccCccccccc
Confidence            3566666666531  11121111     14566666665321111111    2345667777777531  2111111111


Q ss_pred             hcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEec
Q 017279          234 YGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNI  313 (374)
Q Consensus       234 ~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l  313 (374)
                       + .+|+.+.+.+.  ++... ...+.+|++|+.+.+.+.. +.....             .......+..|++|+.+++
T Consensus       247 -~-~~L~~i~lp~~--i~~I~-~~aF~~c~~L~~l~l~~~~-~~~~~~-------------~~I~~~aF~~c~~L~~l~l  307 (401)
T 4fdw_A          247 -E-SGITTVKLPNG--VTNIA-SRAFYYCPELAEVTTYGST-FNDDPE-------------AMIHPYCLEGCPKLARFEI  307 (401)
T ss_dssp             -T-CCCSEEEEETT--CCEEC-TTTTTTCTTCCEEEEESSC-CCCCTT-------------CEECTTTTTTCTTCCEECC
T ss_pred             -c-CCccEEEeCCC--ccEEC-hhHhhCCCCCCEEEeCCcc-ccCCcc-------------cEECHHHhhCCccCCeEEe
Confidence             1 46777766441  22111 1122357778888776543 110000             0011112557789999999


Q ss_pred             CCCCCCCHHHHHHHHhhCCCccCCCCCceEEec
Q 017279          314 SQCTALTPPAVQALCDTFPALHTCSGRHSLVMS  346 (374)
Q Consensus       314 ~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls  346 (374)
                      .+  +++.-.-.       ....|++|+.|.|.
T Consensus       308 ~~--~i~~I~~~-------aF~~c~~L~~l~lp  331 (401)
T 4fdw_A          308 PE--SIRILGQG-------LLGGNRKVTQLTIP  331 (401)
T ss_dssp             CT--TCCEECTT-------TTTTCCSCCEEEEC
T ss_pred             CC--ceEEEhhh-------hhcCCCCccEEEEC
Confidence            75  23321111       12578888988874

>3l2o_B F-box only protein 4; small G protein fold, UBL conjugation pathway, ubiquitin Pro ligase, protein binding-cell cycle complex; 2.80A {Homo sapiens}

Probab=90.77  E-value=0.012  Score=50.14  Aligned_cols=30  Identities=7%  Similarity=-0.159  Sum_probs=27.1

Q ss_pred             cCCCcCHHHHHHHHHHHHHhccccCCCCcc
Q 017279            4 EATNLSSEDLNLCFEKMMMAGAGADRAGGV   33 (374)
Q Consensus         4 ~~~~lp~e~~~~i~~~l~~~~~~~~~~~~~   33 (374)
                      ...+||+||+..||+||+..|+++++.||.
T Consensus         4 ~l~~LP~ei~l~IlsfL~p~DL~~l~~vcr   33 (312)
T 3l2o_B            4 TLTRLPIDVQLYILSFLSPHDLCQLGSTNH   33 (312)
T ss_dssp             HHHHSCHHHHHHHHHTSCHHHHHHHHTTCH
T ss_pred             hhHhCCHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            345799999999999999999999999994

>3v7d_B Cell division control protein 4; WD 40 domain, phospho-peptide complex, E3 ubiquitin ligase, cell cycle, phospho binding protein, phosphorylation; HET: SEP; 2.31A {Saccharomyces cerevisiae} PDB: 1nex_B* 3mks_B*

Probab=84.74  E-value=0.13  Score=47.23  Aligned_cols=30  Identities=13%  Similarity=-0.059  Sum_probs=26.9

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCcccc
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM   35 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~~   35 (374)
                      ..||+|++.+||+||+..++.++++||..+
T Consensus        16 ~~lp~~~~~~i~~~l~~~~l~~~~~v~~~w   45 (464)
T 3v7d_B           16 TSLPFEISLKIFNYLQFEDIINSLGVSQNW   45 (464)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHHTTCHHH
T ss_pred             HHCCHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            369999999999999999999999999433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	374
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	6e-11
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-10
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	7e-05
d1fs1a1	41	a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [	1e-04
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.004

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 6e-11
 Identities = 49/211 (23%), Positives = 85/211 (40%), Gaps = 9/211 (4%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
              + H+ LS     ++ L   +  + +KLQ   L  +  +L D  V  +A + + L  L
Sbjct: 45  PFRVQHMDLSNSVIEVSTL-HGILSQCSKLQN--LSLEGLRLSDPIVNTLAKNSN-LVRL 100

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFS-DHALAYLCGFCRKLKILNLCGCVK 196
           +LS     S+ +L  L   C  L  LN+S C  F+  H    +      +  LNL G  K
Sbjct: 101 NLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRK 160

Query: 197 AATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVI 256
                 L  + R C  L  L+L     + +            L+ L L  C  I  ++++
Sbjct: 161 NLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-LNYLQHLSLSRCYDIIPETLL 219

Query: 257 ALANGCPHLRSLGLYYCRNITDRAIYSLAQS 287
            L    P L++L ++    + D  +  L ++
Sbjct: 220 ELGE-IPTLKTLQVFGI--VPDGTLQLLKEA 247

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.6 bits (140), Expect = 2e-10
 Identities = 51/261 (19%), Positives = 89/261 (34%), Gaps = 24/261 (9%)

Query: 89  CKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDR 148
           C  +  +  L+      ++Q + L      +E + +  I + C  LQ+L L    +LSD 
Sbjct: 30  CPRSFMDQPLAEHFSPFRVQHMDLSNSV--IEVSTLHGILSQCSKLQNLSLEGL-RLSDP 86

Query: 149 SLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGR 208
            +  LA    NL RLN+SGC+ FS+ AL  L   C +L  LNL  C      +   A+  
Sbjct: 87  IVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAH 145

Query: 209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSL 268
               +  LNL           ++                  +  +          +L+ L
Sbjct: 146 VSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHL 205

Query: 269 GLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALC 328
            L  C +I    +  L +                     L++L +     +    +Q L 
Sbjct: 206 SLSRCYDIIPETLLELGEI------------------PTLKTLQVFGI--VPDGTLQLLK 245

Query: 329 DTFPALHTCSGRHSLVMSGCL 349
           +  P L       + +    +
Sbjct: 246 EALPHLQINCSHFTTIARPTI 266

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.9 bits (94), Expect = 1e-04
 Identities = 30/163 (18%), Positives = 52/163 (31%), Gaps = 4/163 (2%)

Query: 78  CLGLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDL 137
              L  L+LS C       + +L    ++L  L L       E +   A+A+    +  L
Sbjct: 94  NSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQL 153

Query: 138 DLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKA 197
           +LS   K   +S  +                +    +           L+ L+L  C   
Sbjct: 154 NLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC-YD 212

Query: 198 ATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR 240
                L  +G     L++L +     V D  +  L    P L+
Sbjct: 213 IIPETLLELG-EIPTLKTLQVFGI--VPDGTLQLLKEALPHLQ 252

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (100), Expect = 3e-05
 Identities = 25/98 (25%), Positives = 40/98 (40%), Gaps = 11/98 (11%)

Query: 159 NLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIG---RNCNQLQS 215
           ++  L+I  C   SD   A L    ++ +++ L  C    T+   + I    R    L  
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDC--GLTEARCKDISSALRVNPALAE 59

Query: 216 LNLGWCEDVGDVGVMNLAYG----CPDLRSLDLCGCVC 249
           LNL    ++GDVGV  +  G       ++ L L  C  
Sbjct: 60  LNLRSN-ELGDVGVHCVLQGLQTPSCKIQKLSLQNCCL 96

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (97), Expect = 7e-05
 Identities = 20/93 (21%), Positives = 31/93 (33%), Gaps = 5/93 (5%)

Query: 133 DLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGC--TSFSDHALAYLCGFCRKLKILN 190
           D+Q LD+    +LSD     L         + +  C  T      ++        L  LN
Sbjct: 3   DIQSLDIQ-CEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 61

Query: 191 LCGC--VKAATDYALQAIGRNCNQLQSLNLGWC 221
           L             LQ +     ++Q L+L  C
Sbjct: 62  LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 41

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (86), Expect = 1e-04
 Identities = 14/36 (38%), Positives = 18/36 (50%)

Query: 43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC 78
          W  +P ELLL I S +  P ++  SGVC  W     
Sbjct: 1  WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLAS 36

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.9 bits (82), Expect = 0.002
 Identities = 20/99 (20%), Positives = 37/99 (37%), Gaps = 4/99 (4%)

Query: 122 NAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCG 181
             +  I  +  +L  L+LS +       + ++    PNL  LN+SG    S+  L  + G
Sbjct: 55  ATLRIIEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKG 114

Query: 182 FCRKLKILN---LCGCVKAATDYALQAIGRNCNQLQSLN 217
              +   L+   L    +  + Y          +L  L+
Sbjct: 115 LKLEELWLDGNSLSDTFRDQSTYISAIR-ERFPKLLRLD 152

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.6 bits (81), Expect = 0.004
 Identities = 25/126 (19%), Positives = 44/126 (34%), Gaps = 11/126 (8%)

Query: 158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLN 217
            +   L++ G  S  D     L        +LN    + A     L+ I  N  +L SLN
Sbjct: 22  GSQQALDLKGLRSDPD-----LVAQ-NIDVVLNRRSSMAAT----LRIIEENIPELLSLN 71

Query: 218 LGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP-HLRSLGLYYCRNI 276
           L          + ++    P+L+ L+L G    ++  +  +       L   G       
Sbjct: 72  LSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTF 131

Query: 277 TDRAIY 282
            D++ Y
Sbjct: 132 RDQSTY 137

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	374
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.91
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.9
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.53
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.52
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.5
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.44
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	99.04
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.91
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.88
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.81
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.8
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.76
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.73
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	98.67
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	98.62
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	98.61
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	98.58
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	98.52
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	98.5
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.46
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.42
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	98.39
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.36
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	98.32
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	98.23
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	98.2
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.17
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	98.13
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	98.12
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	97.87
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	97.84
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.82
d1fs1a1	41	Skp2 {Human (Homo sapiens) [TaxId: 9606]}	97.75
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.69
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	97.68
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	97.59
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	97.51
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	97.25
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	97.24
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	96.89
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	96.87
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	96.53
d1nexb1	100	Cdc4 F-box and linker domains {Baker's yeast (Sacc	96.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	96.16
d2ovrb1	102	F-box/WD repeat-containing protein 7, FBXW7 {Human	95.75
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.38
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	95.2
d2ifga3	156	High affinity nerve growth factor receptor, N-term	93.82
d1p22a1	118	F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Hom	93.33

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.91  E-value=1.4e-23  Score=182.08  Aligned_cols=215  Identities=27%  Similarity=0.449  Sum_probs=172.3

Q ss_pred             CCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcC
Q 017279          104 LTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFC  183 (374)
Q Consensus       104 ~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~  183 (374)
                      ..+|++|+++  ...+++..+..+...|++|++|++.++ .+++..+..+.+ +++|++|++++|..+++.++..+...+
T Consensus        45 ~~~L~~LdLs--~~~i~~~~l~~l~~~c~~L~~L~L~~~-~l~~~~~~~l~~-~~~L~~L~Ls~c~~itd~~l~~l~~~~  120 (284)
T d2astb2          45 PFRVQHMDLS--NSVIEVSTLHGILSQCSKLQNLSLEGL-RLSDPIVNTLAK-NSNLVRLNLSGCSGFSEFALQTLLSSC  120 (284)
T ss_dssp             CBCCCEEECT--TCEECHHHHHHHHTTBCCCSEEECTTC-BCCHHHHHHHTT-CTTCSEEECTTCBSCCHHHHHHHHHHC
T ss_pred             CCCCCEEECC--CCccCHHHHHHHHHhCCCccccccccc-CCCcHHHHHHhc-CCCCcCccccccccccccccchhhHHH
Confidence            3578899998  557788888888888999999999987 678887777765 789999999998889998888888889


Q ss_pred             CCCcEEEcCCCccCccHHHHHH-HHhcCCCCCEEeccCC-CCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          184 RKLKILNLCGCVKAATDYALQA-IGRNCNQLQSLNLGWC-EDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~-l~~~~~~L~~L~l~~~-~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      ++|++|++++|.. +++..+.. +...+++|+.|+++++ ..+++.++..+...||+|++|++++|..+++..+..+.+ 
T Consensus       121 ~~L~~L~ls~c~~-~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~-  198 (284)
T d2astb2         121 SRLDELNLSWCFD-FTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQ-  198 (284)
T ss_dssp             TTCCEEECCCCTT-CCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGG-
T ss_pred             Hhccccccccccc-cccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhhcc-
Confidence            9999999998875 66666654 5556788999999875 357888888888889999999999988898888877765 


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH  341 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~  341 (374)
                      +++|++|++++|..+++.++..++..                  ++|+.|++++|  +++..+..+...      ||+|+
T Consensus       199 ~~~L~~L~L~~C~~i~~~~l~~L~~~------------------~~L~~L~l~~~--~~d~~l~~l~~~------lp~L~  252 (284)
T d2astb2         199 LNYLQHLSLSRCYDIIPETLLELGEI------------------PTLKTLQVFGI--VPDGTLQLLKEA------LPHLQ  252 (284)
T ss_dssp             CTTCCEEECTTCTTCCGGGGGGGGGC------------------TTCCEEECTTS--SCTTCHHHHHHH------STTSE
T ss_pred             cCcCCEEECCCCCCCChHHHHHHhcC------------------CCCCEEeeeCC--CCHHHHHHHHHh------Ccccc
Confidence            89999999999988998887766543                  89999999987  777778877744      44444


Q ss_pred             eEEecCCcccccc
Q 017279          342 SLVMSGCLNLTSV  354 (374)
Q Consensus       342 ~L~ls~C~~l~~~  354 (374)
                      .    .|..++.+
T Consensus       253 i----~~~~ls~~  261 (284)
T d2astb2         253 I----NCSHFTTI  261 (284)
T ss_dssp             E----SCCCSCCT
T ss_pred             c----cCccCCCC
Confidence            2    45566554

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=7.2e-23  Score=177.47  Aligned_cols=239  Identities=23%  Similarity=0.346  Sum_probs=184.0

Q ss_pred             CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      |+.+|++...... ..+..+...  ....+.+.  ...+......  .....+|++|+++++ .+++..+..+...|++|
T Consensus         2 W~~lDLs~~~l~~-~~l~~l~~~--~~~~lrl~--~~~~~~~~~~--~~~~~~L~~LdLs~~-~i~~~~l~~l~~~c~~L   73 (284)
T d2astb2           2 WQTLDLTGKNLHP-DVTGRLLSQ--GVIAFRCP--RSFMDQPLAE--HFSPFRVQHMDLSNS-VIEVSTLHGILSQCSKL   73 (284)
T ss_dssp             SSEEECTTCBCCH-HHHHHHHHT--TCSEEECT--TCEECSCCCS--CCCCBCCCEEECTTC-EECHHHHHHHHTTBCCC
T ss_pred             cCEEECCCCCCCc-hHHHHHHhc--cceEeecc--ccccccchhh--hccCCCCCEEECCCC-ccCHHHHHHHHHhCCCc
Confidence            5688888754433 333333332  23344443  1111110000  012458999999986 78888888888889999


Q ss_pred             cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHH-HhcCCCC
Q 017279          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNL-AYGCPDL  239 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l-~~~~~~L  239 (374)
                      ++|++++| .+++..+..+. .+++|++|++++|.. +++..+..++..|++|++|++++|..+++..+... ...+++|
T Consensus        74 ~~L~L~~~-~l~~~~~~~l~-~~~~L~~L~Ls~c~~-itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L  150 (284)
T d2astb2          74 QNLSLEGL-RLSDPIVNTLA-KNSNLVRLNLSGCSG-FSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETI  150 (284)
T ss_dssp             SEEECTTC-BCCHHHHHHHT-TCTTCSEEECTTCBS-CCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTC
T ss_pred             cccccccc-CCCcHHHHHHh-cCCCCcCcccccccc-ccccccchhhHHHHhccccccccccccccccchhhhccccccc
Confidence            99999997 67887777664 589999999999876 88899999999999999999999988888877654 4456899


Q ss_pred             CeeecCCC-CCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCC
Q 017279          240 RSLDLCGC-VCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTA  318 (374)
Q Consensus       240 ~~L~l~~~-~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~  318 (374)
                      +.|++++| ..+++.++..+..++|+|++|++++|..+++.++..+...                  ++|++|++++|..
T Consensus       151 ~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l~~~------------------~~L~~L~L~~C~~  212 (284)
T d2astb2         151 TQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQL------------------NYLQHLSLSRCYD  212 (284)
T ss_dssp             CEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGC------------------TTCCEEECTTCTT
T ss_pred             chhhhcccccccccccccccccccccccccccccccCCCchhhhhhccc------------------CcCCEEECCCCCC
Confidence            99999997 4689999999998999999999999988998887777644                  8999999999999


Q ss_pred             CCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccce
Q 017279          319 LTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCV  357 (374)
Q Consensus       319 l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~  357 (374)
                      +++.++..+       ..||+|+.|+++||  +++.++.
T Consensus       213 i~~~~l~~L-------~~~~~L~~L~l~~~--~~d~~l~  242 (284)
T d2astb2         213 IIPETLLEL-------GEIPTLKTLQVFGI--VPDGTLQ  242 (284)
T ss_dssp             CCGGGGGGG-------GGCTTCCEEECTTS--SCTTCHH
T ss_pred             CChHHHHHH-------hcCCCCCEEeeeCC--CCHHHHH
Confidence            998766543       57899999999999  5554443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-13  Score=124.77  Aligned_cols=111  Identities=17%  Similarity=0.258  Sum_probs=84.4

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHH---HhCCCCCEEecCCCCCCCHHHHHHHHhc
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIA---NSCHDLQDLDLSKSFKLSDRSLYALAHG  156 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~---~~~~~L~~L~l~~~~~~~~~~~~~l~~~  156 (374)
                      .++.|+++..... +..+..+...+++++.|+++  ++.+++.....++   ..+++|++|+++++ .+++.++..+...
T Consensus         3 ~l~~ld~~~~~i~-~~~~~~l~~~l~~l~~L~L~--~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N-~i~~~~~~~l~~~   78 (460)
T d1z7xw1           3 DIQSLDIQCEELS-DARWAELLPLLQQCQVVRLD--DCGLTEARCKDISSALRVNPALAELNLRSN-ELGDVGVHCVLQG   78 (460)
T ss_dssp             EEEEEEEESCCCC-HHHHHHHHHHHTTCSEEEEE--SSCCCHHHHHHHHHHHHTCTTCCEEECTTC-CCHHHHHHHHHHT
T ss_pred             CCCEEEeeCCcCC-hHHHHHHHHhCCCCCEEEeC--CCCCCHHHHHHHHHHHhcCCCCCEEECcCC-cCChHHHHHHHHH
Confidence            4788999765544 44555677788999999999  5578887665554   56899999999996 7888888887764


Q ss_pred             C----CCCcEEeecCCCCCCHHHHHH---HHhcCCCCcEEEcCCCc
Q 017279          157 C----PNLTRLNISGCTSFSDHALAY---LCGFCRKLKILNLCGCV  195 (374)
Q Consensus       157 ~----~~L~~L~L~~~~~~~~~~~~~---l~~~~~~L~~L~L~~~~  195 (374)
                      +    .+|++|++++| .+++.++..   ....+++|++|+++++.
T Consensus        79 l~~~~~~L~~L~L~~n-~it~~~~~~l~~~l~~~~~L~~L~L~~N~  123 (460)
T d1z7xw1          79 LQTPSCKIQKLSLQNC-CLTGAGCGVLSSTLRTLPTLQELHLSDNL  123 (460)
T ss_dssp             TCSTTCCCCEEECTTS-CCBGGGHHHHHHHTTSCTTCCEEECCSSB
T ss_pred             HhcCCCCCCEEECCCC-Cccccccccccchhhcccccccccccccc
Confidence            3    47999999986 577665444   34568999999998754

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.52  E-value=3.7e-12  Score=112.47  Aligned_cols=248  Identities=18%  Similarity=0.192  Sum_probs=170.2

Q ss_pred             ccCceeecccccccch--HHHHHHhhcCCCCcEEEeeCCCC--CCC---hHHH---HHHHHhCCCCCEEecCCCCCCCHH
Q 017279           79 LGLTHLSLSWCKNNMN--NLVLSLAPKLTKLQTLVLRQDKP--QLE---DNAV---EAIANSCHDLQDLDLSKSFKLSDR  148 (374)
Q Consensus        79 ~~l~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~l~~~~~--~~~---~~~~---~~l~~~~~~L~~L~l~~~~~~~~~  148 (374)
                      ..++.|+++++.....  ..+.......++++.+.++ .+.  ...   +..+   ......+++|++|+++++ .+++.
T Consensus        31 ~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~-~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n-~i~~~  108 (344)
T d2ca6a1          31 DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN-AFGPT  108 (344)
T ss_dssp             SCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECC-SCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC-CCCTT
T ss_pred             CCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECC-CCcccccccccchHHHHHHHHHhhCCCccccccccc-ccccc
Confidence            4488999987643222  1233345567899999997 221  111   2222   233345789999999987 44444


Q ss_pred             H---HHHHHhcCCCCcEEeecCCCCCCHHHHHHH------------HhcCCCCcEEEcCCCccCccHHH---HHHHHhcC
Q 017279          149 S---LYALAHGCPNLTRLNISGCTSFSDHALAYL------------CGFCRKLKILNLCGCVKAATDYA---LQAIGRNC  210 (374)
Q Consensus       149 ~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l------------~~~~~~L~~L~L~~~~~~~~~~~---~~~l~~~~  210 (374)
                      +   +......+++|+.|+++++ .+.+.+...+            ....+.|+.+.+++..  +.+..   +......+
T Consensus       109 ~~~~l~~~l~~~~~L~~L~l~~n-~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~--i~~~~~~~l~~~l~~~  185 (344)
T d2ca6a1         109 AQEPLIDFLSKHTPLEHLYLHNN-GLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR--LENGSMKEWAKTFQSH  185 (344)
T ss_dssp             THHHHHHHHHHCTTCCEEECCSS-CCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC--CTGGGHHHHHHHHHHC
T ss_pred             cccchhhhhcccccchheecccc-cccccccccccccccccccccccccCcccceeeccccc--ccccccccccchhhhh
Confidence            3   3334445799999999985 5655443322            2357889999998754  44443   33345578


Q ss_pred             CCCCEEeccCCCCCCHHHHHHH----HhcCCCCCeeecCCCCCCCHHHHHHHH---hcCCCCceEecCCCCCCCHHHHHH
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNL----AYGCPDLRSLDLCGCVCITDDSVIALA---NGCPHLRSLGLYYCRNITDRAIYS  283 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l----~~~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~~i~~~~~~~  283 (374)
                      ++|+.|+++.+. +++.++..+    ...+++|+.|++++| .+++.+...+.   ..+++|+.|++++|. +++.++..
T Consensus       186 ~~L~~L~L~~n~-i~~~g~~~~l~~~l~~~~~L~~L~Ls~N-~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~-i~~~g~~~  262 (344)
T d2ca6a1         186 RLLHTVKMVQNG-IRPEGIEHLLLEGLAYCQELKVLDLQDN-TFTHLGSSALAIALKSWPNLRELGLNDCL-LSARGAAA  262 (344)
T ss_dssp             TTCCEEECCSSC-CCHHHHHHHHHTTGGGCTTCCEEECCSS-CCHHHHHHHHHHHGGGCTTCCEEECTTCC-CCHHHHHH
T ss_pred             hhhccccccccc-ccccccccchhhhhcchhhhcccccccc-cccccccccccccccccccchhhhhhcCc-cCchhhHH
Confidence            999999999864 777665432    345789999999985 68877665554   458999999999996 99998888


Q ss_pred             HHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          284 LAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       284 l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      ++..-..            ...++|++|++++ +.+++.++..+...+.  .++++|+.|+++++.
T Consensus       263 l~~~l~~------------~~~~~L~~L~ls~-N~i~~~~~~~l~~~l~--~~~~~L~~L~l~~N~  313 (344)
T d2ca6a1         263 VVDAFSK------------LENIGLQTLRLQY-NEIELDAVRTLKTVID--EKMPDLLFLELNGNR  313 (344)
T ss_dssp             HHHHHHT------------CSSCCCCEEECCS-SCCBHHHHHHHHHHHH--HHCTTCCEEECTTSB
T ss_pred             HHHHhhh------------ccCCCCCEEECCC-CcCChHHHHHHHHHHH--ccCCCCCEEECCCCc
Confidence            8753100            0236899999999 5799988888875432  256889999999975

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.50  E-value=1.3e-12  Score=115.37  Aligned_cols=239  Identities=19%  Similarity=0.184  Sum_probs=169.9

Q ss_pred             HhhcCCCCcEEEeeCCCCCCChHHHHHHHHh---CCCCCEEecCCCCCC-----CHHHHHHH---HhcCCCCcEEeecCC
Q 017279          100 LAPKLTKLQTLVLRQDKPQLEDNAVEAIANS---CHDLQDLDLSKSFKL-----SDRSLYAL---AHGCPNLTRLNISGC  168 (374)
Q Consensus       100 ~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~---~~~L~~L~l~~~~~~-----~~~~~~~l---~~~~~~L~~L~L~~~  168 (374)
                      .......++.|+++  .+.+++..+..+...   .++|+.+++.++..-     ....+..+   ...+++|++|+++++
T Consensus        26 ~L~~~~~l~~L~Ls--~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          26 VLLEDDSVKEIVLS--GNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHHCSCCCEEECT--TSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HHhhCCCCCEEECc--CCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccccc
Confidence            34567899999999  567888877777654   578999999875211     12233333   345799999999985


Q ss_pred             CCCCHHH---HHHHHhcCCCCcEEEcCCCccCccHHHHHHH------------HhcCCCCCEEeccCCCCCCHHHHHH--
Q 017279          169 TSFSDHA---LAYLCGFCRKLKILNLCGCVKAATDYALQAI------------GRNCNQLQSLNLGWCEDVGDVGVMN--  231 (374)
Q Consensus       169 ~~~~~~~---~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l------------~~~~~~L~~L~l~~~~~~~~~~~~~--  231 (374)
                       .+++.+   +......+++|++|+++++.  +.......+            ....+.|+.+.++++ .+++.++..  
T Consensus       104 -~i~~~~~~~l~~~l~~~~~L~~L~l~~n~--l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n-~i~~~~~~~l~  179 (344)
T d2ca6a1         104 -AFGPTAQEPLIDFLSKHTPLEHLYLHNNG--LGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN-RLENGSMKEWA  179 (344)
T ss_dssp             -CCCTTTHHHHHHHHHHCTTCCEEECCSSC--CHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS-CCTGGGHHHHH
T ss_pred             -ccccccccchhhhhcccccchheeccccc--ccccccccccccccccccccccccCcccceeecccc-ccccccccccc
Confidence             454443   44445568999999999865  444433222            235789999999874 466554443  


Q ss_pred             -HHhcCCCCCeeecCCCCCCCHHHHHHH----HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCC
Q 017279          232 -LAYGCPDLRSLDLCGCVCITDDSVIAL----ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEE  306 (374)
Q Consensus       232 -l~~~~~~L~~L~l~~~~~l~~~~l~~l----~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~  306 (374)
                       ....+++|+.|++++| .++++++..+    ...+++|+.|+++++. +++.+...++...              ..++
T Consensus       180 ~~l~~~~~L~~L~L~~n-~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~-i~~~g~~~L~~~l--------------~~~~  243 (344)
T d2ca6a1         180 KTFQSHRLLHTVKMVQN-GIRPEGIEHLLLEGLAYCQELKVLDLQDNT-FTHLGSSALAIAL--------------KSWP  243 (344)
T ss_dssp             HHHHHCTTCCEEECCSS-CCCHHHHHHHHHTTGGGCTTCCEEECCSSC-CHHHHHHHHHHHG--------------GGCT
T ss_pred             chhhhhhhhcccccccc-cccccccccchhhhhcchhhhccccccccc-ccccccccccccc--------------cccc
Confidence             3456899999999995 6887765433    2357899999999985 8988888886542              2458


Q ss_pred             CCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCccc
Q 017279          307 GLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSH  363 (374)
Q Consensus       307 ~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~  363 (374)
                      +|++|++++| .+++.++..++..+... ..+.|++|++++|. ++..+.....+.+
T Consensus       244 ~L~~L~Ls~n-~i~~~g~~~l~~~l~~~-~~~~L~~L~ls~N~-i~~~~~~~l~~~l  297 (344)
T d2ca6a1         244 NLRELGLNDC-LLSARGAAAVVDAFSKL-ENIGLQTLRLQYNE-IELDAVRTLKTVI  297 (344)
T ss_dssp             TCCEEECTTC-CCCHHHHHHHHHHHHTC-SSCCCCEEECCSSC-CBHHHHHHHHHHH
T ss_pred             cchhhhhhcC-ccCchhhHHHHHHhhhc-cCCCCCEEECCCCc-CChHHHHHHHHHH
Confidence            9999999995 79999988888765432 35789999999985 8877655544433

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=2.2e-11  Score=111.32  Aligned_cols=268  Identities=20%  Similarity=0.218  Sum_probs=156.7

Q ss_pred             hHHHhh--hccCceeecccccccchH--HHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhC----CCCCEEecCCCC
Q 017279           72 GWRDAI--CLGLTHLSLSWCKNNMNN--LVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSC----HDLQDLDLSKSF  143 (374)
Q Consensus        72 ~w~~~~--~~~l~~L~l~~~~~~~~~--~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~----~~L~~L~l~~~~  143 (374)
                      .|.+.+  ...++.+++.++......  .+......+++|+.|+++  .+.+++..+..+...+    .+|++|+++++ 
T Consensus        18 ~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs--~N~i~~~~~~~l~~~l~~~~~~L~~L~L~~n-   94 (460)
T d1z7xw1          18 RWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR--SNELGDVGVHCVLQGLQTPSCKIQKLSLQNC-   94 (460)
T ss_dssp             HHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECT--TCCCHHHHHHHHHHTTCSTTCCCCEEECTTS-
T ss_pred             HHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECc--CCcCChHHHHHHHHHHhcCCCCCCEEECCCC-
Confidence            455443  356899999998654322  334455789999999999  6678887777776543    57999999997 


Q ss_pred             CCCHHHHHHHH---hcCCCCcEEeecCCCCCCHHHHHHHH--------------------------------hcCCCCcE
Q 017279          144 KLSDRSLYALA---HGCPNLTRLNISGCTSFSDHALAYLC--------------------------------GFCRKLKI  188 (374)
Q Consensus       144 ~~~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~~~~l~--------------------------------~~~~~L~~  188 (374)
                      .+++.+...+.   ..+++|++|+++++ .+.+.++..+.                                ...+.++.
T Consensus        95 ~it~~~~~~l~~~l~~~~~L~~L~L~~N-~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  173 (460)
T d1z7xw1          95 CLTGAGCGVLSSTLRTLPTLQELHLSDN-LLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKE  173 (460)
T ss_dssp             CCBGGGHHHHHHHTTSCTTCCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCE
T ss_pred             Cccccccccccchhhccccccccccccc-cchhhhhhhhhhcccccccccccccccccccchhhhccccccccccccccc
Confidence            57776655443   45789999999874 44443322220                                11122222


Q ss_pred             EEcCCCcc-------------------------------------------------------CccHHH----HHHHHhc
Q 017279          189 LNLCGCVK-------------------------------------------------------AATDYA----LQAIGRN  209 (374)
Q Consensus       189 L~L~~~~~-------------------------------------------------------~~~~~~----~~~l~~~  209 (374)
                      +.++++..                                                       ...+..    .......
T Consensus       174 ~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~  253 (460)
T d1z7xw1         174 LTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHP  253 (460)
T ss_dssp             EECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTST
T ss_pred             ccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccchhhccccccccchhhcccccc
Confidence            22221110                                                       000000    0001112


Q ss_pred             CCCCCEEeccCCC---------------------------CCCHHHHHHHHh----cCCCCCeeecCCCCCCCHHHHHHH
Q 017279          210 CNQLQSLNLGWCE---------------------------DVGDVGVMNLAY----GCPDLRSLDLCGCVCITDDSVIAL  258 (374)
Q Consensus       210 ~~~L~~L~l~~~~---------------------------~~~~~~~~~l~~----~~~~L~~L~l~~~~~l~~~~l~~l  258 (374)
                      .++++.++++++.                           .+++.++..+..    ..+.|+.+.++++ .+++.....+
T Consensus       254 ~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~l~~~~~~L~~l~l~~~-~l~~~~~~~l  332 (460)
T d1z7xw1         254 SSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSC-SFTAACCSHF  332 (460)
T ss_dssp             TCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTS-CCBGGGHHHH
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccchhhcccccccccccccccccc-chhhhhhhhc
Confidence            2334444443322                           234444443322    2457888888885 4655544333


Q ss_pred             ---HhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCcc
Q 017279          259 ---ANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALH  335 (374)
Q Consensus       259 ---~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~  335 (374)
                         ....++|+.|+++++. ++++++..++.....             ..+.|++|++++| .+++.++..++..+   .
T Consensus       333 ~~~~~~~~~L~~L~Ls~N~-i~~~g~~~l~~~l~~-------------~~~~L~~L~Ls~n-~i~~~~~~~l~~~l---~  394 (460)
T d1z7xw1         333 SSVLAQNRFLLELQISNNR-LEDAGVRELCQGLGQ-------------PGSVLRVLWLADC-DVSDSSCSSLAATL---L  394 (460)
T ss_dssp             HHHHHHCSSCCEEECCSSB-CHHHHHHHHHHHHTS-------------TTCCCCEEECTTS-CCCHHHHHHHHHHH---H
T ss_pred             ccccccccchhhhheeeec-ccCcccchhhhhhhc-------------ccCCCCEEECCCC-CCChHHHHHHHHHH---h
Confidence               3456788888888874 888877777643211             1256888888885 68877777665432   4


Q ss_pred             CCCCCceEEecCCcccccccceecCccc
Q 017279          336 TCSGRHSLVMSGCLNLTSVHCVCAGQSH  363 (374)
Q Consensus       336 ~~~~L~~L~ls~C~~l~~~~~~~~~~~~  363 (374)
                      .+++|++|+++++ .++++++....+++
T Consensus       395 ~~~~L~~L~Ls~N-~i~~~g~~~l~~~l  421 (460)
T d1z7xw1         395 ANHSLRELDLSNN-CLGDAGILQLVESV  421 (460)
T ss_dssp             HCCCCCEEECCSS-SCCHHHHHHHHHHH
T ss_pred             cCCCCCEEECCCC-cCCHHHHHHHHHHH
Confidence            5677888888877 57776665544433

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.04  E-value=7e-11  Score=68.08  Aligned_cols=37  Identities=38%  Similarity=0.714  Sum_probs=34.4

Q ss_pred             cCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           43 WKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        43 ~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      |+.||+|++.+||+||+.++++++++|||+|++++..
T Consensus         1 f~~LP~eil~~If~~L~~~dl~~~~~Vcr~w~~l~~~   37 (41)
T d1fs1a1           1 WDSLPDELLLGIFSCLCLPELLKVSGVCKRWYRLASD   37 (41)
T ss_dssp             CCSSCHHHHHHHHTTSCGGGHHHHHTTCHHHHHHHTC
T ss_pred             CCcCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCC
Confidence            6789999999999999999999999999999987643

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.91  E-value=2.1e-08  Score=78.03  Aligned_cols=130  Identities=13%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             HHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHH---hcCCCCceEecCCCC
Q 017279          201 YALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALA---NGCPHLRSLGLYYCR  274 (374)
Q Consensus       201 ~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~---~~~~~L~~L~l~~~~  274 (374)
                      +.+..+..+.++|++|+++++..+++.++..++.   ..++|++|++++| .+++.+...+.   ...+.|++|++++|.
T Consensus         5 ~~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n-~l~~~~~~~la~~L~~n~~L~~L~L~~n~   83 (167)
T d1pgva_           5 SCINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANT-AISDSEARGLIELIETSPSLRVLNVESNF   83 (167)
T ss_dssp             HHHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTS-CCBHHHHTTHHHHHHHCSSCCEEECCSSB
T ss_pred             HHHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeecccc-ccchhHHHHHhhhhhhcccccceeeehhh
Confidence            4556666667777777777655566666555433   3566777777774 56666553333   236677788877774


Q ss_pred             CCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC--CCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          275 NITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC--TALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       275 ~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~--~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                       ++++++..++...              ...++|++|+++++  ..+++.+...++..   +...+.|+.|+++++.
T Consensus        84 -i~~~g~~~l~~aL--------------~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~---L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          84 -LTPELLARLLRST--------------LVTQSIVEFKADNQRQSVLGNQVEMDMMMA---IEENESLLRVGISFAS  142 (167)
T ss_dssp             -CCHHHHHHHHHHT--------------TTTCCCSEEECCCCSSCCCCHHHHHHHHHH---HHHCSSCCEEECCCCC
T ss_pred             -cchHHHHHHHHHH--------------HhCCcCCEEECCCCcCCCccHHHHHHHHHH---HHhCCCccEeeCcCCC
Confidence             7777777776542              13467888888763  24556665555543   2456777777776653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.88  E-value=6.1e-08  Score=75.26  Aligned_cols=131  Identities=17%  Similarity=0.127  Sum_probs=91.2

Q ss_pred             HHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh---cCCCCCeeecCCCCCCCHHHHHHHHh---cCCCCceEecCCC
Q 017279          200 DYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY---GCPDLRSLDLCGCVCITDDSVIALAN---GCPHLRSLGLYYC  273 (374)
Q Consensus       200 ~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~---~~~~L~~L~l~~~~~l~~~~l~~l~~---~~~~L~~L~l~~~  273 (374)
                      ++.+..+..+.|+|++|++++...+++.++..++.   ..++|++|++++| .+++++...+.+   ..+.++.+++.+|
T Consensus         6 ~~~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n-~l~~~~~~~L~~~l~~~~~l~~l~l~~~   84 (166)
T d1io0a_           6 EETLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGT-RSNDPVAFALAEMLKVNNTLKSLNVESN   84 (166)
T ss_dssp             HHHHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTS-CCCHHHHHHHHHHHHHCSSCCEEECCSS
T ss_pred             HHHHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCC-cccHHHHHHHHHHHhhcccchhhhhccc
Confidence            34566666677888888887766677777666654   5677888888884 677776654443   4677888888877


Q ss_pred             CCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC-CCCCHHHHHHHHhhCCCccCCCCCceEEecCCc
Q 017279          274 RNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC-TALTPPAVQALCDTFPALHTCSGRHSLVMSGCL  349 (374)
Q Consensus       274 ~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~  349 (374)
                      . ++++++..+....              ...++|++++|+.+ +.+++.+...++..+   ..+++|+.|++++..
T Consensus        85 ~-~~~~g~~~l~~~l--------------~~~~~L~~l~L~l~~n~i~~~~~~~La~~L---~~n~~L~~L~l~~~~  143 (166)
T d1io0a_          85 F-ISGSGILALVEAL--------------QSNTSLIELRIDNQSQPLGNNVEMEIANML---EKNTTLLKFGYHFTQ  143 (166)
T ss_dssp             C-CCHHHHHHHHHGG--------------GGCSSCCEEECCCCSSCCCHHHHHHHHHHH---HHCSSCCEEECCCSS
T ss_pred             c-ccchhHHHHHHHH--------------HhCccccEEeeccCCCcCcHHHHHHHHHHH---HhCCCcCEEeCcCCC
Confidence            5 7888887776552              23477887777642 477787777776543   467788888887653

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.81  E-value=2.6e-09  Score=85.94  Aligned_cols=39  Identities=23%  Similarity=0.294  Sum_probs=19.8

Q ss_pred             CCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          306 EGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       306 ~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                      ++|+.|++.++ .+++         ++.++++++|+.|++++| ++++..
T Consensus       150 ~~L~~L~l~~n-~l~~---------l~~l~~l~~L~~L~ls~N-~i~~i~  188 (199)
T d2omxa2         150 TSLQQLNFSSN-QVTD---------LKPLANLTTLERLDISSN-KVSDIS  188 (199)
T ss_dssp             TTCSEEECCSS-CCCC---------CGGGTTCTTCCEEECCSS-CCCCCG
T ss_pred             ccccccccccc-cccC---------CccccCCCCCCEEECCCC-CCCCCc
Confidence            55666666552 3432         122345566666666666 355543

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.80  E-value=1e-08  Score=84.20  Aligned_cols=185  Identities=18%  Similarity=0.221  Sum_probs=96.1

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      .+|+.|.+.  .+.+++  +..+ ..+++|++|+++++. +.+.  .. ...+++|+++.++++. ++.  +.. ...++
T Consensus        41 ~~L~~L~l~--~~~i~~--l~~l-~~l~~L~~L~ls~n~-i~~~--~~-l~~l~~l~~l~~~~n~-~~~--i~~-l~~l~  107 (227)
T d1h6ua2          41 DGITTLSAF--GTGVTT--IEGV-QYLNNLIGLELKDNQ-ITDL--AP-LKNLTKITELELSGNP-LKN--VSA-IAGLQ  107 (227)
T ss_dssp             HTCCEEECT--TSCCCC--CTTG-GGCTTCCEEECCSSC-CCCC--GG-GTTCCSCCEEECCSCC-CSC--CGG-GTTCT
T ss_pred             CCcCEEECC--CCCCCc--chhH-hcCCCCcEeecCCce-eecc--cc-cccccccccccccccc-ccc--ccc-ccccc
Confidence            456666665  333332  1112 346667777666652 2221  11 2336677777776542 221  111 23467


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|+.+.++++..  .+  ... ....+.++.+.+.++.......    ...+++|+.|+++++. +++.  ..+ .++++
T Consensus       108 ~L~~l~l~~~~~--~~--~~~-~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~-~~~~--~~l-~~l~~  174 (227)
T d1h6ua2         108 SIKTLDLTSTQI--TD--VTP-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDL--TPL-ANLSK  174 (227)
T ss_dssp             TCCEEECTTSCC--CC--CGG-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC--GGG-TTCTT
T ss_pred             cccccccccccc--cc--cch-hccccchhhhhchhhhhchhhh----hccccccccccccccc-cccc--hhh-ccccc
Confidence            777777766542  11  111 2235667777776543221111    2346777777777743 3211  112 34777


Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279          265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV  344 (374)
Q Consensus       265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~  344 (374)
                      |+.|+++++. +++  +..+                  ..+++|++|++++| ++++         ++.++.+++|+.|+
T Consensus       175 L~~L~Ls~n~-l~~--l~~l------------------~~l~~L~~L~Ls~N-~lt~---------i~~l~~l~~L~~L~  223 (227)
T d1h6ua2         175 LTTLKADDNK-ISD--ISPL------------------ASLPNLIEVHLKNN-QISD---------VSPLANTSNLFIVT  223 (227)
T ss_dssp             CCEEECCSSC-CCC--CGGG------------------GGCTTCCEEECTTS-CCCB---------CGGGTTCTTCCEEE
T ss_pred             ceecccCCCc-cCC--Chhh------------------cCCCCCCEEECcCC-cCCC---------CcccccCCCCCEEE
Confidence            8888887763 443  1112                  13478888888875 5663         23346777888887


Q ss_pred             ec
Q 017279          345 MS  346 (374)
Q Consensus       345 ls  346 (374)
                      ++
T Consensus       224 ls  225 (227)
T d1h6ua2         224 LT  225 (227)
T ss_dssp             EE
T ss_pred             ee
Confidence            75

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.76  E-value=1.6e-08  Score=89.71  Aligned_cols=43  Identities=12%  Similarity=0.087  Sum_probs=31.3

Q ss_pred             ccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCccccccc
Q 017279          302 RYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       302 ~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                      +..+++|++|++++| .+++         ++.+..|++|+.|++++| .+++..
T Consensus       325 l~~l~~L~~L~L~~n-~l~~---------l~~l~~l~~L~~L~l~~N-~l~~l~  367 (384)
T d2omza2         325 VSSLTKLQRLFFANN-KVSD---------VSSLANLTNINWLSAGHN-QISDLT  367 (384)
T ss_dssp             GGGCTTCCEEECCSS-CCCC---------CGGGGGCTTCCEEECCSS-CCCBCG
T ss_pred             cccCCCCCEEECCCC-CCCC---------ChhHcCCCCCCEEECCCC-cCCCCh
Confidence            567888888888885 5653         233567888999999888 476654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.73  E-value=2.9e-08  Score=79.68  Aligned_cols=161  Identities=20%  Similarity=0.192  Sum_probs=90.3

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      ++++++|++.++ .+.+  +..+ +.+++|++|+++++ .+++.  .. ...+++|++|+++++..  ..  +.. ...+
T Consensus        39 l~~l~~L~l~~~-~i~~--l~~l-~~l~nL~~L~Ls~N-~l~~~--~~-l~~l~~L~~L~l~~n~~--~~--~~~-l~~l  105 (199)
T d2omxa2          39 LDQVTTLQADRL-GIKS--IDGV-EYLNNLTQINFSNN-QLTDI--TP-LKNLTKLVDILMNNNQI--AD--ITP-LANL  105 (199)
T ss_dssp             HTTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSCC--CC--CGG-GTTC
T ss_pred             hcCCCEEECCCC-CCCC--cccc-ccCCCcCcCccccc-cccCc--cc-ccCCccccccccccccc--cc--ccc-cccc
Confidence            346666666664 2221  1111 33677777777764 34331  11 34577777777776542  11  111 3357


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      ++|+.|+++++......    ....+++|+.|+++++. +..  +..+ ..+++|+.|++.++. +++  +.        
T Consensus       106 ~~L~~L~l~~~~~~~~~----~~~~l~~L~~L~l~~n~-l~~--~~~l-~~~~~L~~L~l~~n~-l~~--l~--------  166 (199)
T d2omxa2         106 TNLTGLTLFNNQITDID----PLKNLTNLNRLELSSNT-ISD--ISAL-SGLTSLQQLNFSSNQ-VTD--LK--------  166 (199)
T ss_dssp             TTCSEEECCSSCCCCCG----GGTTCTTCSEEECCSSC-CCC--CGGG-TTCTTCSEEECCSSC-CCC--CG--------
T ss_pred             ccccccccccccccccc----ccchhhhhHHhhhhhhh-hcc--cccc-ccccccccccccccc-ccC--Cc--------
Confidence            77888888765432211    13457788888888753 432  1222 347888888888774 443  11        


Q ss_pred             CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceE
Q 017279          291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSL  343 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L  343 (374)
                                ++.++++|++|+++++ .+++         ++.+..+++|+.|
T Consensus       167 ----------~l~~l~~L~~L~ls~N-~i~~---------i~~l~~L~~L~~L  199 (199)
T d2omxa2         167 ----------PLANLTTLERLDISSN-KVSD---------ISVLAKLTNLESL  199 (199)
T ss_dssp             ----------GGTTCTTCCEEECCSS-CCCC---------CGGGGGCTTCSEE
T ss_pred             ----------cccCCCCCCEEECCCC-CCCC---------CccccCCCCCCcC
Confidence                      1224588999999885 5764         2223566777765

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.72  E-value=1.3e-08  Score=82.49  Aligned_cols=144  Identities=26%  Similarity=0.244  Sum_probs=79.8

Q ss_pred             cCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhc
Q 017279          156 GCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYG  235 (374)
Q Consensus       156 ~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~  235 (374)
                      .+++|++|+++++ .+++.  .. ...+++|+.|+++++.  +.+  +.. ...+++|+.|++.++.. ..  +.. ...
T Consensus        66 ~l~~L~~L~L~~n-~i~~l--~~-~~~l~~L~~L~l~~n~--i~~--l~~-l~~l~~L~~L~l~~~~~-~~--~~~-l~~  132 (210)
T d1h6ta2          66 YLPNVTKLFLNGN-KLTDI--KP-LANLKNLGWLFLDENK--VKD--LSS-LKDLKKLKSLSLEHNGI-SD--ING-LVH  132 (210)
T ss_dssp             GCTTCCEEECCSS-CCCCC--GG-GTTCTTCCEEECCSSC--CCC--GGG-GTTCTTCCEEECTTSCC-CC--CGG-GGG
T ss_pred             hCCCCCEEeCCCc-cccCc--cc-cccCcccccccccccc--ccc--ccc-ccccccccccccccccc-cc--ccc-ccc
Confidence            3566666666653 33321  11 2346667777776643  322  111 23467777777766542 22  111 235


Q ss_pred             CCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCC
Q 017279          236 CPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQ  315 (374)
Q Consensus       236 ~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~  315 (374)
                      +++++.++++++ .+++..  . ...+++|+.++++++. +++  +..+                  ..+++|++|++++
T Consensus       133 l~~l~~l~~~~n-~l~~~~--~-~~~l~~L~~l~l~~n~-l~~--i~~l------------------~~l~~L~~L~Ls~  187 (210)
T d1h6ta2         133 LPQLESLYLGNN-KITDIT--V-LSRLTKLDTLSLEDNQ-ISD--IVPL------------------AGLTKLQNLYLSK  187 (210)
T ss_dssp             CTTCCEEECCSS-CCCCCG--G-GGGCTTCSEEECCSSC-CCC--CGGG------------------TTCTTCCEEECCS
T ss_pred             cccccccccccc-cccccc--c-cccccccccccccccc-ccc--cccc------------------cCCCCCCEEECCC
Confidence            677777777774 343211  1 2247778888887764 432  1111                  2457888888887


Q ss_pred             CCCCCHHHHHHHHhhCCCccCCCCCceEEecC
Q 017279          316 CTALTPPAVQALCDTFPALHTCSGRHSLVMSG  347 (374)
Q Consensus       316 ~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~  347 (374)
                      + .+++         ++.+..+++|+.|++++
T Consensus       188 N-~i~~---------l~~l~~l~~L~~L~Ls~  209 (210)
T d1h6ta2         188 N-HISD---------LRALAGLKNLDVLELFS  209 (210)
T ss_dssp             S-CCCB---------CGGGTTCTTCSEEEEEE
T ss_pred             C-CCCC---------ChhhcCCCCCCEEEccC
Confidence            4 5653         33456778888888863

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.67  E-value=6e-08  Score=79.48  Aligned_cols=173  Identities=15%  Similarity=0.143  Sum_probs=117.2

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcC
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNC  210 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~  210 (374)
                      +.+|++|++.++ .+++  +..+ ..+++|++|+++++ .+...  .. ...+++|+.++++++.  ++.  +..+ ..+
T Consensus        40 l~~L~~L~l~~~-~i~~--l~~l-~~l~~L~~L~ls~n-~i~~~--~~-l~~l~~l~~l~~~~n~--~~~--i~~l-~~l  106 (227)
T d1h6ua2          40 LDGITTLSAFGT-GVTT--IEGV-QYLNNLIGLELKDN-QITDL--AP-LKNLTKITELELSGNP--LKN--VSAI-AGL  106 (227)
T ss_dssp             HHTCCEEECTTS-CCCC--CTTG-GGCTTCCEEECCSS-CCCCC--GG-GTTCCSCCEEECCSCC--CSC--CGGG-TTC
T ss_pred             cCCcCEEECCCC-CCCc--chhH-hcCCCCcEeecCCc-eeecc--cc-cccccccccccccccc--ccc--cccc-ccc
Confidence            458999999987 4443  2233 45899999999985 44331  11 4568999999999865  222  2223 368


Q ss_pred             CCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCC
Q 017279          211 NQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVK  290 (374)
Q Consensus       211 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~  290 (374)
                      ++|+.+.++++......   . ....+.++.+.++++.......    ...+++|+.|++.++. +.+.           
T Consensus       107 ~~L~~l~l~~~~~~~~~---~-~~~~~~~~~l~~~~~~~~~~~~----~~~~~~L~~L~l~~n~-~~~~-----------  166 (227)
T d1h6ua2         107 QSIKTLDLTSTQITDVT---P-LAGLSNLQVLYLDLNQITNISP----LAGLTNLQYLSIGNAQ-VSDL-----------  166 (227)
T ss_dssp             TTCCEEECTTSCCCCCG---G-GTTCTTCCEEECCSSCCCCCGG----GGGCTTCCEEECCSSC-CCCC-----------
T ss_pred             ccccccccccccccccc---h-hccccchhhhhchhhhhchhhh----hccccccccccccccc-cccc-----------
Confidence            99999999886533221   1 2356889999998854322221    2358899999998875 3321           


Q ss_pred             CCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccc
Q 017279          291 NKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHC  356 (374)
Q Consensus       291 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~  356 (374)
                               .++..+++|++|+++++ .+++         ++.+..+++|+.|++++| ++++..-
T Consensus       167 ---------~~l~~l~~L~~L~Ls~n-~l~~---------l~~l~~l~~L~~L~Ls~N-~lt~i~~  212 (227)
T d1h6ua2         167 ---------TPLANLSKLTTLKADDN-KISD---------ISPLASLPNLIEVHLKNN-QISDVSP  212 (227)
T ss_dssp             ---------GGGTTCTTCCEEECCSS-CCCC---------CGGGGGCTTCCEEECTTS-CCCBCGG
T ss_pred             ---------hhhcccccceecccCCC-ccCC---------ChhhcCCCCCCEEECcCC-cCCCCcc
Confidence                     11235699999999995 6764         333578899999999999 5887653

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=98.62  E-value=1.6e-06  Score=66.97  Aligned_cols=122  Identities=17%  Similarity=0.211  Sum_probs=69.1

Q ss_pred             HHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHh---cCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCC
Q 017279          149 SLYALAHGCPNLTRLNISGCTSFSDHALAYLCG---FCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCE  222 (374)
Q Consensus       149 ~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~---~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~  222 (374)
                      .+..+....|+|++|++++...+++.++..+..   ..+.|++|+++++.  +++.....+   ....++++.++++++.
T Consensus         8 ~l~~~~~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~--l~~~~~~~L~~~l~~~~~l~~l~l~~~~   85 (166)
T d1io0a_           8 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTR--SNDPVAFALAEMLKVNNTLKSLNVESNF   85 (166)
T ss_dssp             HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSC--CCHHHHHHHHHHHHHCSSCCEEECCSSC
T ss_pred             HHHHHHhcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCc--ccHHHHHHHHHHHhhcccchhhhhcccc
Confidence            344555555666666666555566665544432   45667777776653  455444432   3345677777776643


Q ss_pred             CCCHHHHHHHHh---cCCCCCeeecCCC-CCCCHHHHHHHH---hcCCCCceEecCCC
Q 017279          223 DVGDVGVMNLAY---GCPDLRSLDLCGC-VCITDDSVIALA---NGCPHLRSLGLYYC  273 (374)
Q Consensus       223 ~~~~~~~~~l~~---~~~~L~~L~l~~~-~~l~~~~l~~l~---~~~~~L~~L~l~~~  273 (374)
                       +++.++..+..   ..++|+.++++.+ +.+++++...+.   +..++|+.|++...
T Consensus        86 -~~~~g~~~l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~  142 (166)
T d1io0a_          86 -ISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFT  142 (166)
T ss_dssp             -CCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCS
T ss_pred             -ccchhHHHHHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCC
Confidence             56665555443   3566776656533 356665543333   34677777777654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=98.61  E-value=9.6e-07  Score=68.27  Aligned_cols=122  Identities=11%  Similarity=0.127  Sum_probs=64.7

Q ss_pred             HHHHHHhcCCCCcEEeecCCCCCCHHHHHHHH---hcCCCCcEEEcCCCccCccHHHHHHH---HhcCCCCCEEeccCCC
Q 017279          149 SLYALAHGCPNLTRLNISGCTSFSDHALAYLC---GFCRKLKILNLCGCVKAATDYALQAI---GRNCNQLQSLNLGWCE  222 (374)
Q Consensus       149 ~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~---~~~~~L~~L~L~~~~~~~~~~~~~~l---~~~~~~L~~L~l~~~~  222 (374)
                      .+..+....++|++|+|+++..+++.++..+.   ...+.|++|+++++.  +.+.....+   ....+.|++|+++++ 
T Consensus         6 ~l~~l~~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~--l~~~~~~~la~~L~~n~~L~~L~L~~n-   82 (167)
T d1pgva_           6 CINRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTA--ISDSEARGLIELIETSPSLRVLNVESN-   82 (167)
T ss_dssp             HHHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSC--CBHHHHTTHHHHHHHCSSCCEEECCSS-
T ss_pred             HHHHHHhCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccc--cchhHHHHHhhhhhhcccccceeeehh-
Confidence            34455555566666666554445555544432   234556666666643  444433332   234566777777664 


Q ss_pred             CCCHHHHHHHHhc---CCCCCeeecCCCC--CCCHHHHHH---HHhcCCCCceEecCCC
Q 017279          223 DVGDVGVMNLAYG---CPDLRSLDLCGCV--CITDDSVIA---LANGCPHLRSLGLYYC  273 (374)
Q Consensus       223 ~~~~~~~~~l~~~---~~~L~~L~l~~~~--~l~~~~l~~---l~~~~~~L~~L~l~~~  273 (374)
                      .+++.++..++..   .++|++|+++++.  .+++++...   .....+.|+.|+++++
T Consensus        83 ~i~~~g~~~l~~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~  141 (167)
T d1pgva_          83 FLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFA  141 (167)
T ss_dssp             BCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCC
T ss_pred             hcchHHHHHHHHHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCC
Confidence            3666665555433   3557777776542  344444322   2233566777776554

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=98.58  E-value=1.2e-11  Score=107.72  Aligned_cols=118  Identities=18%  Similarity=0.104  Sum_probs=69.1

Q ss_pred             hHHHhhhc------cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCC
Q 017279           72 GWRDAICL------GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKL  145 (374)
Q Consensus        72 ~w~~~~~~------~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~  145 (374)
                      .|+.+.|.      +++.|+++.........++.....+++|++|+++ .++.+.......+ ..+++|++|+++++. +
T Consensus        37 ~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls-~~N~l~g~iP~~i-~~L~~L~~L~Ls~N~-l  113 (313)
T d1ogqa_          37 TWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIG-GINNLVGPIPPAI-AKLTQLHYLYITHTN-V  113 (313)
T ss_dssp             CSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEE-EETTEESCCCGGG-GGCTTCSEEEEEEEC-C
T ss_pred             cCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCChHHhcCccccccccc-ccccccccccccc-ccccccchhhhcccc-c
Confidence            37766553      3778888775443221223345588999999998 3344433222233 348899999998863 3


Q ss_pred             CHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCc
Q 017279          146 SDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCV  195 (374)
Q Consensus       146 ~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~  195 (374)
                      ..... .....+++|+.++++.+.....  ++.....++.|+.++++++.
T Consensus       114 ~~~~~-~~~~~~~~L~~l~l~~N~~~~~--~p~~l~~l~~L~~l~l~~n~  160 (313)
T d1ogqa_         114 SGAIP-DFLSQIKTLVTLDFSYNALSGT--LPPSISSLPNLVGITFDGNR  160 (313)
T ss_dssp             EEECC-GGGGGCTTCCEEECCSSEEESC--CCGGGGGCTTCCEEECCSSC
T ss_pred             ccccc-ccccchhhhccccccccccccc--CchhhccCcccceeeccccc
Confidence            22111 1223478899998876421111  11223468889999988754

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.52  E-value=7.6e-08  Score=77.83  Aligned_cols=158  Identities=18%  Similarity=0.150  Sum_probs=104.3

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      .+|++|+++++ .+...  .. ...+++|++|+++++.  +++  +.. ...+++|+.|+++++. +++  +.. ...++
T Consensus        46 ~~L~~L~l~~~-~i~~l--~~-l~~l~~L~~L~L~~n~--i~~--l~~-~~~l~~L~~L~l~~n~-i~~--l~~-l~~l~  112 (210)
T d1h6ta2          46 NSIDQIIANNS-DIKSV--QG-IQYLPNVTKLFLNGNK--LTD--IKP-LANLKNLGWLFLDENK-VKD--LSS-LKDLK  112 (210)
T ss_dssp             HTCCEEECTTS-CCCCC--TT-GGGCTTCCEEECCSSC--CCC--CGG-GTTCTTCCEEECCSSC-CCC--GGG-GTTCT
T ss_pred             cCccEEECcCC-CCCCc--hh-HhhCCCCCEEeCCCcc--ccC--ccc-cccCcccccccccccc-ccc--ccc-ccccc
Confidence            57888888875 33321  11 3468999999999865  333  222 2468999999998864 554  222 34689


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +|+.|+++++....   +..+ ..+++|+.+.++++. +++..  .                  ...+++|+.++++++ 
T Consensus       113 ~L~~L~l~~~~~~~---~~~l-~~l~~l~~l~~~~n~-l~~~~--~------------------~~~l~~L~~l~l~~n-  166 (210)
T d1h6ta2         113 KLKSLSLEHNGISD---INGL-VHLPQLESLYLGNNK-ITDIT--V------------------LSRLTKLDTLSLEDN-  166 (210)
T ss_dssp             TCCEEECTTSCCCC---CGGG-GGCTTCCEEECCSSC-CCCCG--G------------------GGGCTTCSEEECCSS-
T ss_pred             cccccccccccccc---cccc-ccccccccccccccc-ccccc--c------------------ccccccccccccccc-
Confidence            99999999965332   2223 358899999998875 44311  1                  124589999999984 


Q ss_pred             CCCHHHHHHHHhhCCCccCCCCCceEEecCCcccccccceecCcccc
Q 017279          318 ALTPPAVQALCDTFPALHTCSGRHSLVMSGCLNLTSVHCVCAGQSHR  364 (374)
Q Consensus       318 ~l~~~~l~~l~~~~~~l~~~~~L~~L~ls~C~~l~~~~~~~~~~~~~  364 (374)
                      .+++         ++.+..+++|+.|++++| .+++..-...+.+++
T Consensus       167 ~l~~---------i~~l~~l~~L~~L~Ls~N-~i~~l~~l~~l~~L~  203 (210)
T d1h6ta2         167 QISD---------IVPLAGLTKLQNLYLSKN-HISDLRALAGLKNLD  203 (210)
T ss_dssp             CCCC---------CGGGTTCTTCCEEECCSS-CCCBCGGGTTCTTCS
T ss_pred             cccc---------cccccCCCCCCEEECCCC-CCCCChhhcCCCCCC
Confidence            5653         223567899999999999 587755444444443

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=98.50  E-value=2.4e-07  Score=81.93  Aligned_cols=190  Identities=21%  Similarity=0.219  Sum_probs=121.9

Q ss_pred             hhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHH
Q 017279          101 APKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLC  180 (374)
Q Consensus       101 ~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~  180 (374)
                      ...+++++.+.++  ...+.....   ...+++|++|++.++ .+++  +.. ...+++|+.|+++++ .+...  .. .
T Consensus       193 ~~~l~~~~~l~l~--~n~i~~~~~---~~~~~~L~~L~l~~n-~l~~--~~~-l~~l~~L~~L~l~~n-~l~~~--~~-~  259 (384)
T d2omza2         193 LAKLTNLESLIAT--NNQISDITP---LGILTNLDELSLNGN-QLKD--IGT-LASLTNLTDLDLANN-QISNL--AP-L  259 (384)
T ss_dssp             GGGCTTCSEEECC--SSCCCCCGG---GGGCTTCCEEECCSS-CCCC--CGG-GGGCTTCSEEECCSS-CCCCC--GG-G
T ss_pred             cccccccceeecc--CCccCCCCc---ccccCCCCEEECCCC-CCCC--cch-hhcccccchhccccC-ccCCC--Cc-c
Confidence            3456778888887  333333211   134678999999886 3333  122 234788999998875 33321  11 3


Q ss_pred             hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279          181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~  260 (374)
                      ..+++|++|+++++.  +..  +.. ...++.++.+.+..+. +.+  +. ....+++++.|+++++ .+++.  .. ..
T Consensus       260 ~~~~~L~~L~l~~~~--l~~--~~~-~~~~~~l~~l~~~~n~-l~~--~~-~~~~~~~l~~L~ls~n-~l~~l--~~-l~  326 (384)
T d2omza2         260 SGLTKLTELKLGANQ--ISN--ISP-LAGLTALTNLELNENQ-LED--IS-PISNLKNLTYLTLYFN-NISDI--SP-VS  326 (384)
T ss_dssp             TTCTTCSEEECCSSC--CCC--CGG-GTTCTTCSEEECCSSC-CSC--CG-GGGGCTTCSEEECCSS-CCSCC--GG-GG
T ss_pred             cccccCCEeeccCcc--cCC--CCc-cccccccccccccccc-ccc--cc-ccchhcccCeEECCCC-CCCCC--cc-cc
Confidence            457889999988754  221  111 3357788888887754 333  11 2456899999999995 55532  12 34


Q ss_pred             cCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCC
Q 017279          261 GCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGR  340 (374)
Q Consensus       261 ~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L  340 (374)
                      .+++|++|++++|. +++  +..+                  ..+++|++|+++++ .+++         ++.+.++++|
T Consensus       327 ~l~~L~~L~L~~n~-l~~--l~~l------------------~~l~~L~~L~l~~N-~l~~---------l~~l~~l~~L  375 (384)
T d2omza2         327 SLTKLQRLFFANNK-VSD--VSSL------------------ANLTNINWLSAGHN-QISD---------LTPLANLTRI  375 (384)
T ss_dssp             GCTTCCEEECCSSC-CCC--CGGG------------------GGCTTCCEEECCSS-CCCB---------CGGGTTCTTC
T ss_pred             cCCCCCEEECCCCC-CCC--ChhH------------------cCCCCCCEEECCCC-cCCC---------ChhhccCCCC
Confidence            69999999999985 653  1122                  24599999999984 6763         2335788999


Q ss_pred             ceEEecC
Q 017279          341 HSLVMSG  347 (374)
Q Consensus       341 ~~L~ls~  347 (374)
                      +.|+|++
T Consensus       376 ~~L~L~~  382 (384)
T d2omza2         376 TQLGLND  382 (384)
T ss_dssp             SEEECCC
T ss_pred             CEeeCCC
Confidence            9999986

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.46  E-value=3.4e-09  Score=89.45  Aligned_cols=153  Identities=23%  Similarity=0.196  Sum_probs=79.6

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.++......+ ..+++|++|+++++ .++.  +... ..+++|++|+++++ .+..  .......++
T Consensus        31 ~~l~~L~Ls--~N~i~~l~~~~f-~~l~~L~~L~L~~N-~l~~--l~~~-~~l~~L~~L~Ls~N-~l~~--~~~~~~~l~  100 (266)
T d1p9ag_          31 KDTTILHLS--ENLLYTFSLATL-MPYTRLTQLNLDRA-ELTK--LQVD-GTLPVLGTLDLSHN-QLQS--LPLLGQTLP  100 (266)
T ss_dssp             TTCCEEECT--TSCCSEEEGGGG-TTCTTCCEEECTTS-CCCE--EECC-SCCTTCCEEECCSS-CCSS--CCCCTTTCT
T ss_pred             cCCCEEECc--CCcCCCcCHHHh-hccccccccccccc-cccc--cccc-cccccccccccccc-cccc--ccccccccc
Confidence            468888887  445543222222 34677888888876 3332  1111 23677888888764 3322  111234467


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|+.|+++++..  .. .........++++.|.+.++. +.... ......+++|+.|+++++ .++..... ....+++
T Consensus       101 ~L~~L~l~~~~~--~~-~~~~~~~~l~~l~~L~l~~n~-l~~l~-~~~~~~l~~l~~l~l~~N-~l~~~~~~-~~~~l~~  173 (266)
T d1p9ag_         101 ALTVLDVSFNRL--TS-LPLGALRGLGELQELYLKGNE-LKTLP-PGLLTPTPKLEKLSLANN-NLTELPAG-LLNGLEN  173 (266)
T ss_dssp             TCCEEECCSSCC--CC-CCSSTTTTCTTCCEEECTTSC-CCCCC-TTTTTTCTTCCEEECTTS-CCSCCCTT-TTTTCTT
T ss_pred             cccccccccccc--ce-eeccccccccccccccccccc-cceec-cccccccccchhcccccc-cccccCcc-ccccccc
Confidence            777777776442  11 011122345677777776543 22110 112234567777777774 34321111 1234677


Q ss_pred             CceEecCCCC
Q 017279          265 LRSLGLYYCR  274 (374)
Q Consensus       265 L~~L~l~~~~  274 (374)
                      |++|+++++.
T Consensus       174 L~~L~Ls~N~  183 (266)
T d1p9ag_         174 LDTLLLQENS  183 (266)
T ss_dssp             CCEEECCSSC
T ss_pred             cceeecccCC
Confidence            7777777664

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=1.3e-09  Score=93.02  Aligned_cols=12  Identities=8%  Similarity=0.052  Sum_probs=6.5

Q ss_pred             CCCCCceEEecC
Q 017279          336 TCSGRHSLVMSG  347 (374)
Q Consensus       336 ~~~~L~~L~ls~  347 (374)
                      .+++|+.|++++
T Consensus       223 ~~~~L~~L~l~~  234 (284)
T d1ozna_         223 PLRALQYLRLND  234 (284)
T ss_dssp             TCTTCCEEECCS
T ss_pred             cccccCEEEecC
Confidence            445555555555

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.39  E-value=3.1e-08  Score=69.69  Aligned_cols=39  Identities=23%  Similarity=0.449  Sum_probs=36.2

Q ss_pred             CCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhh
Q 017279           40 ITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAIC   78 (374)
Q Consensus        40 ~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~   78 (374)
                      .+.+..||+|++.+||+||+.++++++++||++|++++.
T Consensus         3 ~D~~~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W~~~~~   41 (100)
T d1nexb1           3 RDLITSLPFEISLKIFNYLQFEDIINSLGVSQNWNKIIR   41 (100)
T ss_dssp             CCHHHHSCHHHHHHHHTTSCHHHHHHHTTTCHHHHHHHH
T ss_pred             CCchhhCCHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHH
Confidence            468899999999999999999999999999999998764

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.36  E-value=4.4e-08  Score=84.12  Aligned_cols=136  Identities=15%  Similarity=0.088  Sum_probs=62.9

Q ss_pred             cCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhc
Q 017279          182 FCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       182 ~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      .+++|+.+++.++..  ..  +.  ...+++|++|++.++. ..... ......++.++.|+++++ .++.... ....+
T Consensus       148 ~l~~L~~l~l~~n~l--~~--l~--~~~~~~L~~L~l~~n~-~~~~~-~~~~~~~~~l~~L~~s~n-~l~~~~~-~~~~~  217 (305)
T d1xkua_         148 GMKKLSYIRIADTNI--TT--IP--QGLPPSLTELHLDGNK-ITKVD-AASLKGLNNLAKLGLSFN-SISAVDN-GSLAN  217 (305)
T ss_dssp             GCTTCCEEECCSSCC--CS--CC--SSCCTTCSEEECTTSC-CCEEC-TGGGTTCTTCCEEECCSS-CCCEECT-TTGGG
T ss_pred             cccccCccccccCCc--cc--cC--cccCCccCEEECCCCc-CCCCC-hhHhhccccccccccccc-ccccccc-ccccc
Confidence            355666666655431  11  00  0124566666665533 11111 112234566666666663 3332111 12224


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCc
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRH  341 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~  341 (374)
                      +++|+.|+++++. ++.                   .+.++..+++|++|++++ ++++.-.-. .+.........++|+
T Consensus       218 l~~L~~L~L~~N~-L~~-------------------lp~~l~~l~~L~~L~Ls~-N~i~~i~~~-~f~~~~~~~~~~~L~  275 (305)
T d1xkua_         218 TPHLRELHLNNNK-LVK-------------------VPGGLADHKYIQVVYLHN-NNISAIGSN-DFCPPGYNTKKASYS  275 (305)
T ss_dssp             STTCCEEECCSSC-CSS-------------------CCTTTTTCSSCCEEECCS-SCCCCCCTT-SSSCSSCCTTSCCCS
T ss_pred             cccceeeeccccc-ccc-------------------cccccccccCCCEEECCC-CccCccChh-hccCcchhcccCCCC
Confidence            6667777666663 321                   011233457777777777 345521100 011111223456777


Q ss_pred             eEEecCCc
Q 017279          342 SLVMSGCL  349 (374)
Q Consensus       342 ~L~ls~C~  349 (374)
                      .|++++++
T Consensus       276 ~L~L~~N~  283 (305)
T d1xkua_         276 GVSLFSNP  283 (305)
T ss_dssp             EEECCSSS
T ss_pred             EEECCCCc
Confidence            77777775

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.32  E-value=1.3e-07  Score=66.83  Aligned_cols=41  Identities=24%  Similarity=0.309  Sum_probs=37.6

Q ss_pred             cCCccCCCCHHHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           39 VITEWKDIPMELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        39 ~~~~~~~Lp~eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      ..+++..||+|++.+||+||+..+++++++|||+|++++..
T Consensus        15 ~~D~i~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w~~l~~~   55 (102)
T d2ovrb1          15 QRDFISLLPKELALYVLSFLEPKDLLQAAQTCRYWRILAED   55 (102)
T ss_dssp             CCSTTTSSCHHHHHHHHTTSCHHHHHHHTTSCHHHHHHHTC
T ss_pred             ccCChhhCCHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCC
Confidence            46899999999999999999999999999999999987643

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.23  E-value=9.9e-09  Score=87.39  Aligned_cols=202  Identities=18%  Similarity=0.112  Sum_probs=111.4

Q ss_pred             CceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCC
Q 017279           81 LTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNL  160 (374)
Q Consensus        81 l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  160 (374)
                      +++|+++++...  ......+..+++|++++++  ...+...... .....+.++.+.+.....++...... ...+++|
T Consensus        34 ~~~L~Ls~N~i~--~i~~~~f~~l~~L~~L~ls--~n~l~~i~~~-~~~~~~~~~~l~~~~~~~~~~l~~~~-~~~l~~L  107 (284)
T d1ozna_          34 SQRIFLHGNRIS--HVPAASFRACRNLTILWLH--SNVLARIDAA-AFTGLALLEQLDLSDNAQLRSVDPAT-FHGLGRL  107 (284)
T ss_dssp             CSEEECTTSCCC--EECTTTTTTCTTCCEEECC--SSCCCEECTT-TTTTCTTCCEEECCSCTTCCCCCTTT-TTTCTTC
T ss_pred             CCEEECcCCcCC--CCCHHHhhccccccccccc--cccccccccc-cccccccccccccccccccccccchh-hcccccC
Confidence            567777765432  1122334567888888887  4444322111 11335677777665443333211111 2346888


Q ss_pred             cEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCC
Q 017279          161 TRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLR  240 (374)
Q Consensus       161 ~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~  240 (374)
                      ++|+++++. +.... ......+++|+.+++.+..  +.... ...+..+++|+.|+++++. +.... .....++++|+
T Consensus       108 ~~L~l~~n~-~~~~~-~~~~~~~~~L~~l~l~~N~--l~~i~-~~~f~~~~~L~~L~l~~N~-l~~l~-~~~f~~l~~L~  180 (284)
T d1ozna_         108 HTLHLDRCG-LQELG-PGLFRGLAALQYLYLQDNA--LQALP-DDTFRDLGNLTHLFLHGNR-ISSVP-ERAFRGLHSLD  180 (284)
T ss_dssp             CEEECTTSC-CCCCC-TTTTTTCTTCCEEECCSSC--CCCCC-TTTTTTCTTCCEEECCSSC-CCEEC-TTTTTTCTTCC
T ss_pred             CEEecCCcc-ccccc-ccccchhcccchhhhcccc--ccccC-hhHhccccchhhcccccCc-ccccc-hhhhccccccc
Confidence            888888743 22111 1123346788888888743  32111 1234457788888888753 43211 12234678888


Q ss_pred             eeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279          241 SLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       241 ~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                      .++++++ .++.... .....+++|++|+++++. +.......+.                  .+++|+.|+++++
T Consensus       181 ~l~l~~N-~l~~i~~-~~f~~l~~L~~L~l~~N~-i~~~~~~~~~------------------~~~~L~~L~l~~N  235 (284)
T d1ozna_         181 RLLLHQN-RVAHVHP-HAFRDLGRLMTLYLFANN-LSALPTEALA------------------PLRALQYLRLNDN  235 (284)
T ss_dssp             EEECCSS-CCCEECT-TTTTTCTTCCEEECCSSC-CSCCCHHHHT------------------TCTTCCEEECCSS
T ss_pred             hhhhhhc-cccccCh-hHhhhhhhcccccccccc-cccccccccc------------------cccccCEEEecCC
Confidence            8888884 3442211 223457888888888875 4432223332                  2378899998874

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.20  E-value=1.6e-07  Score=80.50  Aligned_cols=226  Identities=18%  Similarity=0.143  Sum_probs=135.1

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++++...  ......+..+++|+.|+++  ...+....... ...+++|++|+++++ .++.-  .  ....+.
T Consensus        32 ~l~~L~Ls~N~i~--~l~~~~f~~l~~L~~L~l~--~n~~~~i~~~~-f~~l~~L~~L~l~~n-~l~~l--~--~~~~~~  101 (305)
T d1xkua_          32 DTALLDLQNNKIT--EIKDGDFKNLKNLHTLILI--NNKISKISPGA-FAPLVKLERLYLSKN-QLKEL--P--EKMPKT  101 (305)
T ss_dssp             TCCEEECCSSCCC--CBCTTTTTTCTTCCEEECC--SSCCCCBCTTT-TTTCTTCCEEECCSS-CCSBC--C--SSCCTT
T ss_pred             CCCEEECcCCcCC--CcChhHhhccccccccccc--cccccccchhh-hhCCCccCEecccCC-ccCcC--c--cchhhh
Confidence            3778888876432  1112235578899999998  33333211111 245889999999986 33321  1  122468


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      ++.|.+..+ .+..... ........+..+.......... .........+++|+.+++.++. +...  .  ...+++|
T Consensus       102 l~~L~~~~n-~l~~l~~-~~~~~~~~~~~l~~~~n~~~~~-~~~~~~~~~l~~L~~l~l~~n~-l~~l--~--~~~~~~L  173 (305)
T d1xkua_         102 LQELRVHEN-EITKVRK-SVFNGLNQMIVVELGTNPLKSS-GIENGAFQGMKKLSYIRIADTN-ITTI--P--QGLPPSL  173 (305)
T ss_dssp             CCEEECCSS-CCCBBCH-HHHTTCTTCCEEECCSSCCCGG-GBCTTGGGGCTTCCEEECCSSC-CCSC--C--SSCCTTC
T ss_pred             hhhhhcccc-chhhhhh-hhhhcccccccccccccccccc-CCCccccccccccCccccccCC-cccc--C--cccCCcc
Confidence            888988763 2322111 1223467778888766432111 1122234568899999998754 3221  0  1236899


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTAL  319 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l  319 (374)
                      +.|+++++. .+.... .....++.++.|+++++. ++......                  +..+++|++|+++++ .+
T Consensus       174 ~~L~l~~n~-~~~~~~-~~~~~~~~l~~L~~s~n~-l~~~~~~~------------------~~~l~~L~~L~L~~N-~L  231 (305)
T d1xkua_         174 TELHLDGNK-ITKVDA-ASLKGLNNLAKLGLSFNS-ISAVDNGS------------------LANTPHLRELHLNNN-KL  231 (305)
T ss_dssp             SEEECTTSC-CCEECT-GGGTTCTTCCEEECCSSC-CCEECTTT------------------GGGSTTCCEEECCSS-CC
T ss_pred             CEEECCCCc-CCCCCh-hHhhcccccccccccccc-cccccccc------------------ccccccceeeecccc-cc
Confidence            999999854 332211 223458899999998874 44311111                  234589999999995 56


Q ss_pred             CHHHHHHHHhhCC-CccCCCCCceEEecCCccccccc
Q 017279          320 TPPAVQALCDTFP-ALHTCSGRHSLVMSGCLNLTSVH  355 (374)
Q Consensus       320 ~~~~l~~l~~~~~-~l~~~~~L~~L~ls~C~~l~~~~  355 (374)
                      +.         +| .+..+++|+.|+++++ +|+...
T Consensus       232 ~~---------lp~~l~~l~~L~~L~Ls~N-~i~~i~  258 (305)
T d1xkua_         232 VK---------VPGGLADHKYIQVVYLHNN-NISAIG  258 (305)
T ss_dssp             SS---------CCTTTTTCSSCCEEECCSS-CCCCCC
T ss_pred             cc---------cccccccccCCCEEECCCC-ccCccC
Confidence            52         22 3567899999999998 477653

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.17  E-value=5.3e-07  Score=69.37  Aligned_cols=33  Identities=18%  Similarity=0.219  Sum_probs=14.5

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISG  167 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~  167 (374)
                      .++++|+++++ .++.  ++.+...+++|+.|++++
T Consensus        18 ~~lr~L~L~~n-~I~~--i~~~~~~l~~L~~L~Ls~   50 (162)
T d1a9na_          18 VRDRELDLRGY-KIPV--IENLGATLDQFDAIDFSD   50 (162)
T ss_dssp             TSCEEEECTTS-CCCS--CCCGGGGTTCCSEEECCS
T ss_pred             CcCcEEECCCC-CCCc--cCccccccccCCEEECCC
Confidence            34555665554 2221  111223345555555555

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=2.3e-08  Score=84.14  Aligned_cols=175  Identities=21%  Similarity=0.092  Sum_probs=105.9

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .++.|++++.....  .....+..+++|+.|+++  .+.++...  .. ..+++|++|+++++. ++..  ......+++
T Consensus        32 ~l~~L~Ls~N~i~~--l~~~~f~~l~~L~~L~L~--~N~l~~l~--~~-~~l~~L~~L~Ls~N~-l~~~--~~~~~~l~~  101 (266)
T d1p9ag_          32 DTTILHLSENLLYT--FSLATLMPYTRLTQLNLD--RAELTKLQ--VD-GTLPVLGTLDLSHNQ-LQSL--PLLGQTLPA  101 (266)
T ss_dssp             TCCEEECTTSCCSE--EEGGGGTTCTTCCEEECT--TSCCCEEE--CC-SCCTTCCEEECCSSC-CSSC--CCCTTTCTT
T ss_pred             CCCEEECcCCcCCC--cCHHHhhccccccccccc--cccccccc--cc-ccccccccccccccc-cccc--ccccccccc
Confidence            48899998765431  122344578899999998  44554311  11 347899999999873 3221  122345789


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |+.|+++++. +.... ......++++++|++.++.  +..- .......+++|+.|+++++. ++... ......+++|
T Consensus       102 L~~L~l~~~~-~~~~~-~~~~~~l~~l~~L~l~~n~--l~~l-~~~~~~~l~~l~~l~l~~N~-l~~~~-~~~~~~l~~L  174 (266)
T d1p9ag_         102 LTVLDVSFNR-LTSLP-LGALRGLGELQELYLKGNE--LKTL-PPGLLTPTPKLEKLSLANNN-LTELP-AGLLNGLENL  174 (266)
T ss_dssp             CCEEECCSSC-CCCCC-SSTTTTCTTCCEEECTTSC--CCCC-CTTTTTTCTTCCEEECTTSC-CSCCC-TTTTTTCTTC
T ss_pred             cccccccccc-cceee-ccccccccccccccccccc--ccee-ccccccccccchhccccccc-ccccC-cccccccccc
Confidence            9999998753 22111 1122357889999998754  2211 12233457899999998854 43321 1223467899


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ++|+++++ .++.- -..+. ..++|+.|++++++
T Consensus       175 ~~L~Ls~N-~L~~l-p~~~~-~~~~L~~L~L~~Np  206 (266)
T d1p9ag_         175 DTLLLQEN-SLYTI-PKGFF-GSHLLPFAFLHGNP  206 (266)
T ss_dssp             CEEECCSS-CCCCC-CTTTT-TTCCCSEEECCSCC
T ss_pred             ceeecccC-CCccc-ChhHC-CCCCCCEEEecCCC
Confidence            99999985 45421 01222 36788888888765

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=9.3e-08  Score=73.75  Aligned_cols=80  Identities=16%  Similarity=0.177  Sum_probs=33.5

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      +.+|++|+|+++ .++..  ..+...+++|+.|+++++.  +..  +.. ...+++|++|+++++. ++... ..+...+
T Consensus        17 ~~~lr~L~L~~n-~I~~i--~~~~~~l~~L~~L~Ls~N~--i~~--l~~-~~~l~~L~~L~ls~N~-i~~l~-~~~~~~l   86 (162)
T d1a9na_          17 AVRDRELDLRGY-KIPVI--ENLGATLDQFDAIDFSDNE--IRK--LDG-FPLLRRLKTLLVNNNR-ICRIG-EGLDQAL   86 (162)
T ss_dssp             TTSCEEEECTTS-CCCSC--CCGGGGTTCCSEEECCSSC--CCE--ECC-CCCCSSCCEEECCSSC-CCEEC-SCHHHHC
T ss_pred             cCcCcEEECCCC-CCCcc--CccccccccCCEEECCCCC--CCc--cCC-cccCcchhhhhccccc-ccCCC-ccccccc
Confidence            345666666653 33221  1122335556666666533  221  111 1234555555555533 22110 0112234


Q ss_pred             CCCCeeecCC
Q 017279          237 PDLRSLDLCG  246 (374)
Q Consensus       237 ~~L~~L~l~~  246 (374)
                      ++|+.|++++
T Consensus        87 ~~L~~L~L~~   96 (162)
T d1a9na_          87 PDLTELILTN   96 (162)
T ss_dssp             TTCCEEECCS
T ss_pred             cccccceecc
Confidence            5555555555

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=97.87  E-value=6.2e-09  Score=90.02  Aligned_cols=223  Identities=15%  Similarity=0.038  Sum_probs=114.2

Q ss_pred             CCCcEEEeeCCCCCCChH--HHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhc
Q 017279          105 TKLQTLVLRQDKPQLEDN--AVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGF  182 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~--~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~  182 (374)
                      .+++.|+++  ...+...  ....+ ..+++|++|+++++..+.......+. .+++|++|+++++ .+.... ......
T Consensus        50 ~~v~~L~L~--~~~l~g~~~lp~~l-~~L~~L~~L~Ls~~N~l~g~iP~~i~-~L~~L~~L~Ls~N-~l~~~~-~~~~~~  123 (313)
T d1ogqa_          50 YRVNNLDLS--GLNLPKPYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIA-KLTQLHYLYITHT-NVSGAI-PDFLSQ  123 (313)
T ss_dssp             CCEEEEEEE--CCCCSSCEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGG-GCTTCSEEEEEEE-CCEEEC-CGGGGG
T ss_pred             EEEEEEECC--CCCCCCCCCCChHH-hcCccccccccccccccccccccccc-cccccchhhhccc-cccccc-cccccc
Confidence            368899998  3333321  11233 34899999999864334322222333 4899999999874 332211 122345


Q ss_pred             CCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC-CeeecCCCCCCCHHHHHHHHhc
Q 017279          183 CRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL-RSLDLCGCVCITDDSVIALANG  261 (374)
Q Consensus       183 ~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L-~~L~l~~~~~l~~~~l~~l~~~  261 (374)
                      ++.|+.+++.++..  . ..+......+++++.++++++. +... +......++++ +.++++++ .++......+.  
T Consensus       124 ~~~L~~l~l~~N~~--~-~~~p~~l~~l~~L~~l~l~~n~-l~~~-ip~~~~~l~~l~~~l~~~~n-~l~~~~~~~~~--  195 (313)
T d1ogqa_         124 IKTLVTLDFSYNAL--S-GTLPPSISSLPNLVGITFDGNR-ISGA-IPDSYGSFSKLFTSMTISRN-RLTGKIPPTFA--  195 (313)
T ss_dssp             CTTCCEEECCSSEE--E-SCCCGGGGGCTTCCEEECCSSC-CEEE-CCGGGGCCCTTCCEEECCSS-EEEEECCGGGG--
T ss_pred             hhhhcccccccccc--c-ccCchhhccCcccceeeccccc-cccc-cccccccccccccccccccc-ccccccccccc--
Confidence            78999999987542  2 1122234568999999998754 2211 11112234443 66777763 33211111111  


Q ss_pred             CCCCceEecCCCCCCCHHHHHHHHhcC-CCCCCcc----ccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCC-Ccc
Q 017279          262 CPHLRSLGLYYCRNITDRAIYSLAQSG-VKNKPGI----WESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFP-ALH  335 (374)
Q Consensus       262 ~~~L~~L~l~~~~~i~~~~~~~l~~~~-~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~-~l~  335 (374)
                      ...+..+++..+.. .......+.... .......    ...+..+..+++|+.|++++ ++++.        .+| .+.
T Consensus       196 ~l~~~~l~l~~~~~-~~~~~~~~~~~~~l~~l~~~~~~l~~~~~~~~~~~~L~~L~Ls~-N~l~g--------~iP~~l~  265 (313)
T d1ogqa_         196 NLNLAFVDLSRNML-EGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRN-NRIYG--------TLPQGLT  265 (313)
T ss_dssp             GCCCSEEECCSSEE-EECCGGGCCTTSCCSEEECCSSEECCBGGGCCCCTTCCEEECCS-SCCEE--------CCCGGGG
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccCcc-Ceecc--------cCChHHh
Confidence            12233444443321 100000000000 0000000    00112355678999999998 45542        233 457


Q ss_pred             CCCCCceEEecCCcccc
Q 017279          336 TCSGRHSLVMSGCLNLT  352 (374)
Q Consensus       336 ~~~~L~~L~ls~C~~l~  352 (374)
                      .+++|+.|+++++. ++
T Consensus       266 ~L~~L~~L~Ls~N~-l~  281 (313)
T d1ogqa_         266 QLKFLHSLNVSFNN-LC  281 (313)
T ss_dssp             GCTTCCEEECCSSE-EE
T ss_pred             CCCCCCEEECcCCc-cc
Confidence            78899999999884 54

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.84  E-value=1.1e-06  Score=63.57  Aligned_cols=41  Identities=22%  Similarity=0.310  Sum_probs=36.3

Q ss_pred             cCCccCCCCH----HHHHHHhcCCCccchhhhcccchhHHHhhhc
Q 017279           39 VITEWKDIPM----ELLLRILSLVDEPTVIVASGVCSGWRDAICL   79 (374)
Q Consensus        39 ~~~~~~~Lp~----eil~~If~~L~~~~l~~~~~vc~~w~~~~~~   79 (374)
                      ..+++..||.    ||+.+||+||+..+++++++|||+|+.++..
T Consensus         7 ~~D~i~~LP~~l~~EI~~~Ils~Ld~~dL~~~s~Vck~W~~l~~d   51 (118)
T d1p22a1           7 QRDFITALPARGLDHIAENILSYLDAKSLCAAELVCKEWYRVTSD   51 (118)
T ss_dssp             CCCHHHHTGGGTCHHHHHHHHTTCCHHHHHHHHHHCHHHHHHHHH
T ss_pred             cccHHHHCCCCChHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcC
Confidence            3467888884    9999999999999999999999999998754

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.82  E-value=2.4e-06  Score=62.34  Aligned_cols=102  Identities=22%  Similarity=0.231  Sum_probs=49.1

Q ss_pred             CCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcC
Q 017279          157 CPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGC  236 (374)
Q Consensus       157 ~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~  236 (374)
                      +++|++|+++++ .++.  ++.....+++|+.|++++..  +..  +.. ...+++|++|+++++. +++.........+
T Consensus        19 l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N~--i~~--l~~-~~~l~~L~~L~l~~N~-i~~~~~~~~l~~~   89 (124)
T d1dcea3          19 LLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDNA--LEN--VDG-VANLPRLQELLLCNNR-LQQSAAIQPLVSC   89 (124)
T ss_dssp             GTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSSC--CCC--CGG-GTTCSSCCEEECCSSC-CCSSSTTGGGGGC
T ss_pred             CCCCCEEECCCC-ccCc--chhhhhhhhccccccccccc--ccc--cCc-cccccccCeEECCCCc-cCCCCCchhhcCC
Confidence            566666666652 3332  11122346666666666633  222  112 2346677777776643 3221111112356


Q ss_pred             CCCCeeecCCCCCCCHH--HHHHHHhcCCCCceE
Q 017279          237 PDLRSLDLCGCVCITDD--SVIALANGCPHLRSL  268 (374)
Q Consensus       237 ~~L~~L~l~~~~~l~~~--~l~~l~~~~~~L~~L  268 (374)
                      ++|+.|+++++ .++..  ....+...+|+|+.|
T Consensus        90 ~~L~~L~l~~N-~i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          90 PRLVLLNLQGN-SLCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             TTCCEEECTTS-GGGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCEEECCCC-cCCcCccHHHHHHHHCcCcceE
Confidence            77777777763 33211  123344446666655

>d1fs1a1 a.158.1.1 (A:109-149) Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.75  E-value=7.2e-07  Score=50.73  Aligned_cols=29  Identities=14%  Similarity=-0.036  Sum_probs=26.8

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCccc
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGGVK   34 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~   34 (374)
                      ..||+|++.+||+||+..++.++++||..
T Consensus         2 ~~LP~eil~~If~~L~~~dl~~~~~Vcr~   30 (41)
T d1fs1a1           2 DSLPDELLLGIFSCLCLPELLKVSGVCKR   30 (41)
T ss_dssp             CSSCHHHHHHHHTTSCGGGHHHHHTTCHH
T ss_pred             CcCCHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            47999999999999999999999999943

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.69  E-value=1.7e-06  Score=68.76  Aligned_cols=128  Identities=20%  Similarity=0.241  Sum_probs=71.4

Q ss_pred             hCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhc
Q 017279          130 SCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRN  209 (374)
Q Consensus       130 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~  209 (374)
                      .+++|++|+++++ .++.  +..+ ..+++|+.|+++++ .++.  ++.+...+++|+.|+++++.  +..  +..+ ..
T Consensus        46 ~L~~L~~L~Ls~n-~I~~--i~~l-~~l~~L~~L~Ls~N-~i~~--i~~~~~~~~~L~~L~l~~N~--i~~--l~~~-~~  113 (198)
T d1m9la_          46 TLKACKHLALSTN-NIEK--ISSL-SGMENLRILSLGRN-LIKK--IENLDAVADTLEELWISYNQ--IAS--LSGI-EK  113 (198)
T ss_dssp             HTTTCCEEECSEE-EESC--CCCH-HHHTTCCEEECCEE-EECS--CSSHHHHHHHCCEEECSEEE--CCC--HHHH-HH
T ss_pred             cccccceeECccc-CCCC--cccc-cCCccccChhhccc-cccc--cccccccccccccccccccc--ccc--cccc-cc
Confidence            3677778777765 2322  1112 23677888888764 3322  11122224578888887743  332  2222 24


Q ss_pred             CCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHH---------HHHHHHhcCCCCceEecC
Q 017279          210 CNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDD---------SVIALANGCPHLRSLGLY  271 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~---------~l~~l~~~~~~L~~L~l~  271 (374)
                      +++|+.|+++++. +++..-......+++|+.|++++++ +...         -...+...+|+|+.|+-.
T Consensus       114 l~~L~~L~L~~N~-i~~~~~~~~l~~l~~L~~L~L~~N~-l~~~~~~~~~~~~~r~~vi~~lp~L~~LD~~  182 (198)
T d1m9la_         114 LVNLRVLYMSNNK-ITNWGEIDKLAALDKLEDLLLAGNP-LYNDYKENNATSEYRIEVVKRLPNLKKLDGM  182 (198)
T ss_dssp             HHHSSEEEESEEE-CCCHHHHHHHTTTTTCSEEEECSSH-HHHHHCTTTTHHHHHHHHHHHCSSCCEESSG
T ss_pred             cccccccccccch-hccccccccccCCCccceeecCCCc-cccCcccccchhhHHHHHHHHCCCcCEeCCc
Confidence            6778888887753 4443222234567888888888842 3211         112334568999998744

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=3.3e-08  Score=81.89  Aligned_cols=212  Identities=12%  Similarity=-0.018  Sum_probs=95.5

Q ss_pred             CCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCC
Q 017279          105 TKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCR  184 (374)
Q Consensus       105 ~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~  184 (374)
                      ++++.|+++  .+.+..-.... ...+++|++|+++++....... ......+++++++.+..+..+..... ..+..++
T Consensus        29 ~~l~~L~Ls--~n~i~~l~~~~-f~~l~~L~~L~ls~n~~~~~i~-~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~  103 (242)
T d1xwdc1          29 RNAIELRFV--LTKLRVIQKGA-FSGFGDLEKIEISQNDVLEVIE-ADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLP  103 (242)
T ss_dssp             SCCSEEEEE--SCCCCEECTTT-TTTCTTCCEEEEESCTTCCEEC-SSSEESCTTCCEEEEECCTTCCEECT-TSEECCT
T ss_pred             CCCCEEECc--CCcCCccChhH-hhccchhhhhhhccccccceee-cccccccccccccccccccccccccc-ccccccc
Confidence            467888887  44444211111 1346788888887763322100 01112367777777765443332111 1234577


Q ss_pred             CCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCC
Q 017279          185 KLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPH  264 (374)
Q Consensus       185 ~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~  264 (374)
                      +|++|++.++.  +............+.+..+...+ ..+.......+......++.|++.++ .++.... ... ..++
T Consensus       104 ~L~~l~l~~~~--l~~~~~~~~~~~l~~l~~~~~~n-~~l~~i~~~~~~~~~~~l~~L~l~~n-~l~~i~~-~~~-~~~~  177 (242)
T d1xwdc1         104 NLQYLLISNTG--IKHLPDVHKIHSLQKVLLDIQDN-INIHTIERNSFVGLSFESVILWLNKN-GIQEIHN-CAF-NGTQ  177 (242)
T ss_dssp             TCCEEEEESCC--CCSCCCCTTTCBSSCEEEEEESC-TTCCEECTTSSTTSBSSCEEEECCSS-CCCEECT-TTT-TTCC
T ss_pred             cccccccchhh--hcccccccccccccccccccccc-cccccccccccccccccceeeecccc-ccccccc-ccc-cchh
Confidence            88888887643  22111111111122232223332 11221111111111236677777763 3432111 111 2455


Q ss_pred             CceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCCCCCHHHHHHHHhhCCCccCCCCCceEE
Q 017279          265 LRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCTALTPPAVQALCDTFPALHTCSGRHSLV  344 (374)
Q Consensus       265 L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~l~~~~~L~~L~  344 (374)
                      ++.+....+..++.-.                  ...+.++++|++|++++ +.++.-..       ..+..+++|+.++
T Consensus       178 l~~~~~l~~n~l~~l~------------------~~~f~~l~~L~~L~Ls~-N~l~~l~~-------~~~~~l~~L~~l~  231 (242)
T d1xwdc1         178 LDELNLSDNNNLEELP------------------NDVFHGASGPVILDISR-TRIHSLPS-------YGLENLKKLRARS  231 (242)
T ss_dssp             EEEEECTTCTTCCCCC------------------TTTTTTSCCCSEEECTT-SCCCCCCS-------SSCTTCCEEESSS
T ss_pred             hhcccccccccccccc------------------HHHhcCCCCCCEEECCC-CcCCccCH-------HHHcCCcccccCc
Confidence            5555433332333100                  01133568999999988 44652110       0135566677777


Q ss_pred             ecCCccccc
Q 017279          345 MSGCLNLTS  353 (374)
Q Consensus       345 ls~C~~l~~  353 (374)
                      ++.++++..
T Consensus       232 ~~~l~~lp~  240 (242)
T d1xwdc1         232 TYNLKKLPT  240 (242)
T ss_dssp             EESSSCSCC
T ss_pred             CCCCCcCCC
Confidence            766655443

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=97.59  E-value=1.7e-06  Score=68.84  Aligned_cols=106  Identities=16%  Similarity=0.139  Sum_probs=71.3

Q ss_pred             hcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHh
Q 017279          155 HGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAY  234 (374)
Q Consensus       155 ~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~  234 (374)
                      ..+++|++|+++++ .+.+.  .. ...+++|+.|+++++.  +..  +..+...+++|+.|+++++. ++..  .. ..
T Consensus        45 ~~L~~L~~L~Ls~n-~I~~i--~~-l~~l~~L~~L~Ls~N~--i~~--i~~~~~~~~~L~~L~l~~N~-i~~l--~~-~~  112 (198)
T d1m9la_          45 STLKACKHLALSTN-NIEKI--SS-LSGMENLRILSLGRNL--IKK--IENLDAVADTLEELWISYNQ-IASL--SG-IE  112 (198)
T ss_dssp             HHTTTCCEEECSEE-EESCC--CC-HHHHTTCCEEECCEEE--ECS--CSSHHHHHHHCCEEECSEEE-CCCH--HH-HH
T ss_pred             hcccccceeECccc-CCCCc--cc-ccCCccccChhhcccc--ccc--cccccccccccccccccccc-cccc--cc-cc
Confidence            34799999999874 44431  11 2357999999999864  332  12223335689999998864 5542  22 23


Q ss_pred             cCCCCCeeecCCCCCCCHH-HHHHHHhcCCCCceEecCCCC
Q 017279          235 GCPDLRSLDLCGCVCITDD-SVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       235 ~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .+++|+.|++++| .+++. .+..+ ..+++|+.|++++++
T Consensus       113 ~l~~L~~L~L~~N-~i~~~~~~~~l-~~l~~L~~L~L~~N~  151 (198)
T d1m9la_         113 KLVNLRVLYMSNN-KITNWGEIDKL-AALDKLEDLLLAGNP  151 (198)
T ss_dssp             HHHHSSEEEESEE-ECCCHHHHHHH-TTTTTCSEEEECSSH
T ss_pred             ccccccccccccc-hhccccccccc-cCCCccceeecCCCc
Confidence            5689999999995 56543 34444 459999999999875

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.51  E-value=1.8e-05  Score=57.42  Aligned_cols=101  Identities=24%  Similarity=0.178  Sum_probs=47.9

Q ss_pred             CCCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccH-HHHHHHHhc
Q 017279          131 CHDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATD-YALQAIGRN  209 (374)
Q Consensus       131 ~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~  209 (374)
                      +++|++|+++++ .++.  +..-...+++|+.|+++++ .++..  +. ...+++|++|++++..  +.. ..+.. ...
T Consensus        19 l~~L~~L~ls~N-~l~~--lp~~~~~l~~L~~L~l~~N-~i~~l--~~-~~~l~~L~~L~l~~N~--i~~~~~~~~-l~~   88 (124)
T d1dcea3          19 LLLVTHLDLSHN-RLRA--LPPALAALRCLEVLQASDN-ALENV--DG-VANLPRLQELLLCNNR--LQQSAAIQP-LVS   88 (124)
T ss_dssp             GTTCCEEECCSS-CCCC--CCGGGGGCTTCCEEECCSS-CCCCC--GG-GTTCSSCCEEECCSSC--CCSSSTTGG-GGG
T ss_pred             CCCCCEEECCCC-ccCc--chhhhhhhhcccccccccc-ccccc--Cc-cccccccCeEECCCCc--cCCCCCchh-hcC
Confidence            556666666664 2322  1111123566666666653 33321  11 2346677777776643  222 11222 234


Q ss_pred             CCCCCEEeccCCCCCCHH--HHHHHHhcCCCCCee
Q 017279          210 CNQLQSLNLGWCEDVGDV--GVMNLAYGCPDLRSL  242 (374)
Q Consensus       210 ~~~L~~L~l~~~~~~~~~--~~~~l~~~~~~L~~L  242 (374)
                      +++|+.|+++++. +.+.  ....+...+|+|+.|
T Consensus        89 ~~~L~~L~l~~N~-i~~~~~~~~~l~~~lp~L~~L  122 (124)
T d1dcea3          89 CPRLVLLNLQGNS-LCQEEGIQERLAEMLPSVSSI  122 (124)
T ss_dssp             CTTCCEEECTTSG-GGGSSSCTTHHHHHCTTCSEE
T ss_pred             CCCCCEEECCCCc-CCcCccHHHHHHHHCcCcceE
Confidence            6777777776533 2111  012333446777665

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=0.00012  Score=55.76  Aligned_cols=39  Identities=23%  Similarity=0.310  Sum_probs=16.5

Q ss_pred             cCCCCCeeecCCCCCCCHH-HHHHHHhcCCCCceEecCCCC
Q 017279          235 GCPDLRSLDLCGCVCITDD-SVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       235 ~~~~L~~L~l~~~~~l~~~-~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .+++|++|+++++ .++.. .+....+.+++|+.|+++++.
T Consensus        63 ~~~~L~~L~Ls~N-~i~~l~~~~~~~~~l~~L~~L~Ls~N~  102 (162)
T d1koha1          63 NIPELLSLNLSNN-RLYRLDDMSSIVQKAPNLKILNLSGNE  102 (162)
T ss_dssp             HCTTCCCCCCCSS-CCCCCSGGGTHHHHSTTCCCCCCTTSC
T ss_pred             hCCCCCEeeCCCc-cccCCchhHHHHhhCCcccccccccCc
Confidence            3455555555552 23221 122222335555555555543

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=97.24  E-value=3.1e-06  Score=67.00  Aligned_cols=109  Identities=19%  Similarity=0.123  Sum_probs=64.7

Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      +++++|+|++..  ++...-...+..+++|+.|+++++. +.... ......+++|++|+++++ .++... ...+.+++
T Consensus        29 ~~l~~L~Ls~N~--i~~~~~~~~f~~l~~L~~L~L~~N~-i~~~~-~~~~~~~~~L~~L~Ls~N-~l~~l~-~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDNE--LGRISSDGLFGRLPHLVKLELKRNQ-LTGIE-PNAFEGASHIQELQLGEN-KIKEIS-NKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSCC--CCSBCCSCSGGGCTTCCEEECCSSC-CCCBC-TTTTTTCTTCCEEECCSC-CCCEEC-SSSSTTCT
T ss_pred             CCCCEEEeCCCC--CcccccccccCCCceEeeeeccccc-ccccc-ccccccccccceeeeccc-cccccC-HHHHhCCC
Confidence            578999998854  3321212234567889999997754 32211 122345688999999984 454211 11234578


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCCC
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQCT  317 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~  317 (374)
                      +|+.|+++++. ++.-..                  ..+..+++|++|+++++.
T Consensus       103 ~L~~L~L~~N~-l~~i~~------------------~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         103 QLKTLNLYDNQ-ISCVMP------------------GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECCSSC-CCEECT------------------TSSTTCTTCCEEECTTCC
T ss_pred             cccccccCCcc-ccccCH------------------HHhcCCcccccccccccc
Confidence            88888888875 442100                  112345888888888743

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=96.89  E-value=1.6e-05  Score=62.74  Aligned_cols=109  Identities=19%  Similarity=0.121  Sum_probs=71.1

Q ss_pred             CCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCC
Q 017279          158 PNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCP  237 (374)
Q Consensus       158 ~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~  237 (374)
                      +++++|+|+++ .++.......+..+++|++|++++..  +... ....+...++|++|+++++. +.... ...+.+++
T Consensus        29 ~~l~~L~Ls~N-~i~~~~~~~~f~~l~~L~~L~L~~N~--i~~~-~~~~~~~~~~L~~L~Ls~N~-l~~l~-~~~F~~l~  102 (192)
T d1w8aa_          29 LHTTELLLNDN-ELGRISSDGLFGRLPHLVKLELKRNQ--LTGI-EPNAFEGASHIQELQLGENK-IKEIS-NKMFLGLH  102 (192)
T ss_dssp             TTCSEEECCSC-CCCSBCCSCSGGGCTTCCEEECCSSC--CCCB-CTTTTTTCTTCCEEECCSCC-CCEEC-SSSSTTCT
T ss_pred             CCCCEEEeCCC-CCcccccccccCCCceEeeeeccccc--cccc-cccccccccccceeeecccc-ccccC-HHHHhCCC
Confidence            58999999984 44321112233468999999998854  2211 12234468899999999864 44321 12235689


Q ss_pred             CCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          238 DLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       238 ~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      +|++|+++++ .++.... ..+..+++|++|+++++.
T Consensus       103 ~L~~L~L~~N-~l~~i~~-~~f~~l~~L~~l~L~~N~  137 (192)
T d1w8aa_         103 QLKTLNLYDN-QISCVMP-GSFEHLNSLTSLNLASNP  137 (192)
T ss_dssp             TCCEEECCSS-CCCEECT-TSSTTCTTCCEEECTTCC
T ss_pred             cccccccCCc-cccccCH-HHhcCCcccccccccccc
Confidence            9999999995 5642211 223358999999999875

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.87  E-value=2.5e-07  Score=76.40  Aligned_cols=185  Identities=13%  Similarity=0.066  Sum_probs=93.1

Q ss_pred             cCceeecccccccchHHHHHHhhcCCCCcEEEeeCCCCCCChHHHHHHHHhCCCCCEEecCCCCCCCHHHHHHHHhcCCC
Q 017279           80 GLTHLSLSWCKNNMNNLVLSLAPKLTKLQTLVLRQDKPQLEDNAVEAIANSCHDLQDLDLSKSFKLSDRSLYALAHGCPN  159 (374)
Q Consensus        80 ~l~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~  159 (374)
                      .+++|+++++....  .....+..+++|+.|+++ .+ .+...........+++++++.+..+..+..... .....+++
T Consensus        30 ~l~~L~Ls~n~i~~--l~~~~f~~l~~L~~L~ls-~n-~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~-~~~~~l~~  104 (242)
T d1xwdc1          30 NAIELRFVLTKLRV--IQKGAFSGFGDLEKIEIS-QN-DVLEVIEADVFSNLPKLHEIRIEKANNLLYINP-EAFQNLPN  104 (242)
T ss_dssp             CCSEEEEESCCCCE--ECTTTTTTCTTCCEEEEE-SC-TTCCEECSSSEESCTTCCEEEEECCTTCCEECT-TSEECCTT
T ss_pred             CCCEEECcCCcCCc--cChhHhhccchhhhhhhc-cc-cccceeecccccccccccccccccccccccccc-cccccccc
Confidence            36778887654321  112234678999999998 33 222111011123467888888766434432211 12245799


Q ss_pred             CcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCC
Q 017279          160 LTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDL  239 (374)
Q Consensus       160 L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L  239 (374)
                      |+.|.++++ .+...........++.+..+...+..  +..-....+......++.|++.++. ++..  .......+++
T Consensus       105 L~~l~l~~~-~l~~~~~~~~~~~l~~l~~~~~~n~~--l~~i~~~~~~~~~~~l~~L~l~~n~-l~~i--~~~~~~~~~l  178 (242)
T d1xwdc1         105 LQYLLISNT-GIKHLPDVHKIHSLQKVLLDIQDNIN--IHTIERNSFVGLSFESVILWLNKNG-IQEI--HNCAFNGTQL  178 (242)
T ss_dssp             CCEEEEESC-CCCSCCCCTTTCBSSCEEEEEESCTT--CCEECTTSSTTSBSSCEEEECCSSC-CCEE--CTTTTTTCCE
T ss_pred             ccccccchh-hhcccccccccccccccccccccccc--cccccccccccccccceeeeccccc-cccc--ccccccchhh
Confidence            999999874 44322111111223344444443321  1111111111123478888887643 3321  1111234666


Q ss_pred             CeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCCCCC
Q 017279          240 RSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCRNIT  277 (374)
Q Consensus       240 ~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~~i~  277 (374)
                      +++....++.++.... ....++++|+.|+++++. ++
T Consensus       179 ~~~~~l~~n~l~~l~~-~~f~~l~~L~~L~Ls~N~-l~  214 (242)
T d1xwdc1         179 DELNLSDNNNLEELPN-DVFHGASGPVILDISRTR-IH  214 (242)
T ss_dssp             EEEECTTCTTCCCCCT-TTTTTSCCCSEEECTTSC-CC
T ss_pred             hccccccccccccccH-HHhcCCCCCCEEECCCCc-CC
Confidence            6665444455542111 223468999999998875 44

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.53  E-value=0.0013  Score=49.61  Aligned_cols=86  Identities=21%  Similarity=0.164  Sum_probs=48.5

Q ss_pred             HHhcCCCCcEEEcCCCccCccH-HHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCC------
Q 017279          179 LCGFCRKLKILNLCGCVKAATD-YALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCIT------  251 (374)
Q Consensus       179 l~~~~~~L~~L~L~~~~~~~~~-~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~------  251 (374)
                      +...+++|++|+++++.  ++. ..+......+++|+.|+++++. +++..-.... ...+|+.|++++++ ++      
T Consensus        60 ~~~~~~~L~~L~Ls~N~--i~~l~~~~~~~~~l~~L~~L~Ls~N~-i~~l~~l~~l-~~~~L~~L~L~~Np-l~~~~~~~  134 (162)
T d1koha1          60 IEENIPELLSLNLSNNR--LYRLDDMSSIVQKAPNLKILNLSGNE-LKSERELDKI-KGLKLEELWLDGNS-LSDTFRDQ  134 (162)
T ss_dssp             HHHHCTTCCCCCCCSSC--CCCCSGGGTHHHHSTTCCCCCCTTSC-CCCGGGHHHH-TTCCCSSCCCTTST-TSSSSSSH
T ss_pred             HHHhCCCCCEeeCCCcc--ccCCchhHHHHhhCCcccccccccCc-cccchhhhhh-hccccceeecCCCC-cCcCcccc
Confidence            33457777777777644  332 2233334557788888887754 3332111222 24567888888743 32      


Q ss_pred             HHHHHHHHhcCCCCceEe
Q 017279          252 DDSVIALANGCPHLRSLG  269 (374)
Q Consensus       252 ~~~l~~l~~~~~~L~~L~  269 (374)
                      ......+.+.+|+|+.|+
T Consensus       135 ~~y~~~i~~~~P~L~~LD  152 (162)
T d1koha1         135 STYISAIRERFPKLLRLD  152 (162)
T ss_dssp             HHHHHHHHTTSTTCCEET
T ss_pred             hhHHHHHHHHCCCCCEEC
Confidence            223455666678888775

>d1nexb1 a.158.1.1 (B:270-369) Cdc4 F-box and linker domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: Cdc4 F-box and linker domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.26  E-value=0.00026  Score=48.81  Aligned_cols=30  Identities=13%  Similarity=-0.059  Sum_probs=27.2

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCcccc
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM   35 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~~   35 (374)
                      +.||+|++.+||+||+..++.++++||...
T Consensus         7 ~~LP~Ell~~I~s~Ld~~dL~~~s~Vcr~W   36 (100)
T d1nexb1           7 TSLPFEISLKIFNYLQFEDIINSLGVSQNW   36 (100)
T ss_dssp             HHSCHHHHHHHHTTSCHHHHHHHTTTCHHH
T ss_pred             hhCCHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            369999999999999999999999999544

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.16  E-value=0.00063  Score=51.14  Aligned_cols=63  Identities=16%  Similarity=0.191  Sum_probs=31.8

Q ss_pred             cCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          209 NCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       209 ~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      ..++|++|.+.+...++...... +.++++|+.|+++++ .++...- ..+..+++|++|+++++.
T Consensus        29 ~l~~l~~L~l~~n~~l~~i~~~~-f~~l~~L~~L~Ls~N-~l~~i~~-~~f~~l~~L~~L~Ls~N~   91 (156)
T d2ifga3          29 GAENLTELYIENQQHLQHLELRD-LRGLGELRNLTIVKS-GLRFVAP-DAFHFTPRLSRLNLSFNA   91 (156)
T ss_dssp             SCSCCSEEECCSCSSCCEECGGG-SCSCCCCSEEECCSS-CCCEECT-TGGGSCSCCCEEECCSSC
T ss_pred             CccccCeeecCCCccccccCchh-hccccccCcceeecc-ccCCccc-ccccccccccceeccCCC
Confidence            35667777775433333221111 234667777777763 3432111 122346667777776654

>d2ovrb1 a.158.1.1 (B:2263-2364) F-box/WD repeat-containing protein 7, FBXW7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD repeat-containing protein 7, FBXW7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.00068  Score=46.80  Aligned_cols=30  Identities=7%  Similarity=-0.216  Sum_probs=27.1

Q ss_pred             CCcCHHHHHHHHHHHHHhccccCCCCcccc
Q 017279            6 TNLSSEDLNLCFEKMMMAGAGADRAGGVKM   35 (374)
Q Consensus         6 ~~lp~e~~~~i~~~l~~~~~~~~~~~~~~~   35 (374)
                      +-||+||+..||+||+..++++++.||...
T Consensus        20 ~~LP~Eil~~Ils~Ld~~dL~~~~~vcr~w   49 (102)
T d2ovrb1          20 SLLPKELALYVLSFLEPKDLLQAAQTCRYW   49 (102)
T ss_dssp             TSSCHHHHHHHHTTSCHHHHHHHTTSCHHH
T ss_pred             hhCCHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            369999999999999999999999999543

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.38  E-value=0.0058  Score=51.83  Aligned_cols=93  Identities=18%  Similarity=0.134  Sum_probs=57.4

Q ss_pred             CCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCC
Q 017279          184 RKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCP  263 (374)
Q Consensus       184 ~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~  263 (374)
                      .++++|+++++.  ++.  ++   ...++|++|+++++. ++.     +.....+|+.|++.++ .++.     +..-.+
T Consensus        38 ~~l~~LdLs~~~--L~~--lp---~~~~~L~~L~Ls~N~-l~~-----lp~~~~~L~~L~l~~n-~l~~-----l~~lp~   98 (353)
T d1jl5a_          38 RQAHELELNNLG--LSS--LP---ELPPHLESLVASCNS-LTE-----LPELPQSLKSLLVDNN-NLKA-----LSDLPP   98 (353)
T ss_dssp             HTCSEEECTTSC--CSC--CC---SCCTTCSEEECCSSC-CSS-----CCCCCTTCCEEECCSS-CCSC-----CCSCCT
T ss_pred             cCCCEEEeCCCC--CCC--CC---CCCCCCCEEECCCCC-Ccc-----cccchhhhhhhhhhhc-ccch-----hhhhcc
Confidence            478899998854  321  21   246789999998743 442     2233568999999984 3431     112234


Q ss_pred             CCceEecCCCCCCCHHHHHHHHhcCCCCCCccccccccccCCCCCcEEecCCC
Q 017279          264 HLRSLGLYYCRNITDRAIYSLAQSGVKNKPGIWESMKGRYDEEGLQSLNISQC  316 (374)
Q Consensus       264 ~L~~L~l~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~  316 (374)
                      .|++|+++++. +..-                    .+...+++|++|+++++
T Consensus        99 ~L~~L~L~~n~-l~~l--------------------p~~~~l~~L~~L~l~~~  130 (353)
T d1jl5a_          99 LLEYLGVSNNQ-LEKL--------------------PELQNSSFLKIIDVDNN  130 (353)
T ss_dssp             TCCEEECCSSC-CSSC--------------------CCCTTCTTCCEEECCSS
T ss_pred             ccccccccccc-cccc--------------------cchhhhccceeeccccc
Confidence            68999988775 4320                    01124578999999874

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=95.20  E-value=0.00095  Score=57.02  Aligned_cols=114  Identities=18%  Similarity=0.157  Sum_probs=67.8

Q ss_pred             CCCCEEecCCCCCCCHHHHHHHHhcCCCCcEEeecCCCCCCHHHHHHHHhcCCCCcEEEcCCCccCccHHHHHHHHhcCC
Q 017279          132 HDLQDLDLSKSFKLSDRSLYALAHGCPNLTRLNISGCTSFSDHALAYLCGFCRKLKILNLCGCVKAATDYALQAIGRNCN  211 (374)
Q Consensus       132 ~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~  211 (374)
                      .++++|+++++ .++.     +....++|++|++++ ..++.  +   .....+|++|++.+..  ++.     +..-.+
T Consensus        38 ~~l~~LdLs~~-~L~~-----lp~~~~~L~~L~Ls~-N~l~~--l---p~~~~~L~~L~l~~n~--l~~-----l~~lp~   98 (353)
T d1jl5a_          38 RQAHELELNNL-GLSS-----LPELPPHLESLVASC-NSLTE--L---PELPQSLKSLLVDNNN--LKA-----LSDLPP   98 (353)
T ss_dssp             HTCSEEECTTS-CCSC-----CCSCCTTCSEEECCS-SCCSS--C---CCCCTTCCEEECCSSC--CSC-----CCSCCT
T ss_pred             cCCCEEEeCCC-CCCC-----CCCCCCCCCEEECCC-CCCcc--c---ccchhhhhhhhhhhcc--cch-----hhhhcc
Confidence            57999999886 4432     112357899999986 45542  1   1235789999988754  221     111235


Q ss_pred             CCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHhcCCCCceEecCCCC
Q 017279          212 QLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALANGCPHLRSLGLYYCR  274 (374)
Q Consensus       212 ~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~~~~~L~~L~l~~~~  274 (374)
                      .|++|+++++. +..  +.. ...+++|+.|+++++. +..     .....+.+..+.+..+.
T Consensus        99 ~L~~L~L~~n~-l~~--lp~-~~~l~~L~~L~l~~~~-~~~-----~~~~~~~l~~l~~~~~~  151 (353)
T d1jl5a_          99 LLEYLGVSNNQ-LEK--LPE-LQNSSFLKIIDVDNNS-LKK-----LPDLPPSLEFIAAGNNQ  151 (353)
T ss_dssp             TCCEEECCSSC-CSS--CCC-CTTCTTCCEEECCSSC-CSC-----CCCCCTTCCEEECCSSC
T ss_pred             ccccccccccc-ccc--ccc-hhhhccceeecccccc-ccc-----cccccccccchhhcccc
Confidence            69999998754 332  111 2356889999998853 321     11124566777665543

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.82  E-value=0.0017  Score=48.63  Aligned_cols=87  Identities=16%  Similarity=-0.014  Sum_probs=53.6

Q ss_pred             hcCCCCcEEEcCCCccCccHHHHHHHHhcCCCCCEEeccCCCCCCHHHHHHHHhcCCCCCeeecCCCCCCCHHHHHHHHh
Q 017279          181 GFCRKLKILNLCGCVKAATDYALQAIGRNCNQLQSLNLGWCEDVGDVGVMNLAYGCPDLRSLDLCGCVCITDDSVIALAN  260 (374)
Q Consensus       181 ~~~~~L~~L~L~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~~l~~~~l~~l~~  260 (374)
                      ..+++|++|++.+... +..-. ...+..+++|+.|+++++. ++... ...+..+++|++|+++++ .++.-. ..+..
T Consensus        28 ~~l~~l~~L~l~~n~~-l~~i~-~~~f~~l~~L~~L~Ls~N~-l~~i~-~~~f~~l~~L~~L~Ls~N-~l~~l~-~~~~~  101 (156)
T d2ifga3          28 PGAENLTELYIENQQH-LQHLE-LRDLRGLGELRNLTIVKSG-LRFVA-PDAFHFTPRLSRLNLSFN-ALESLS-WKTVQ  101 (156)
T ss_dssp             CSCSCCSEEECCSCSS-CCEEC-GGGSCSCCCCSEEECCSSC-CCEEC-TTGGGSCSCCCEEECCSS-CCSCCC-STTTC
T ss_pred             cCccccCeeecCCCcc-ccccC-chhhccccccCcceeeccc-cCCcc-cccccccccccceeccCC-CCcccC-hhhhc
Confidence            3478999999975331 22111 1123468999999999854 54422 123456899999999995 454211 11222


Q ss_pred             cCCCCceEecCCCC
Q 017279          261 GCPHLRSLGLYYCR  274 (374)
Q Consensus       261 ~~~~L~~L~l~~~~  274 (374)
                       ..+|+.|++++++
T Consensus       102 -~~~l~~L~L~~Np  114 (156)
T d2ifga3         102 -GLSLQELVLSGNP  114 (156)
T ss_dssp             -SCCCCEEECCSSC
T ss_pred             -cccccccccCCCc
Confidence             3468888888765

>d1p22a1 a.158.1.1 (A:135-252) F-box/WD-repeat protein 1 (beta-TRCP1) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: F-box domain
superfamily: F-box domain
family: F-box domain
domain: F-box/WD-repeat protein 1 (beta-TRCP1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.33  E-value=0.0023  Score=45.31  Aligned_cols=27  Identities=4%  Similarity=-0.272  Sum_probs=24.3

Q ss_pred             cCHHHHHHHHHHHHHhccccCCCCccc
Q 017279            8 LSSEDLNLCFEKMMMAGAGADRAGGVK   34 (374)
Q Consensus         8 lp~e~~~~i~~~l~~~~~~~~~~~~~~   34 (374)
                      |+|||...||+|||..+++++++||..
T Consensus        18 l~~EI~~~Ils~Ld~~dL~~~s~Vck~   44 (118)
T d1p22a1          18 GLDHIAENILSYLDAKSLCAAELVCKE   44 (118)
T ss_dssp             TCHHHHHHHHTTCCHHHHHHHHHHCHH
T ss_pred             ChHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            457999999999999999999999943