Citrus Sinensis ID: 017282

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
Protein Sequence
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccHHHHHHHHHccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHcccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccHHccccccccccccccccccEEcccccccccccccEEEEEEcccccccccccccccccccccccHHHHcccccccccccHHHEEEEEccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcHHcccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHcHHccHHHHHccccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcHHHccHHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
MSSVLNTVLSTRLsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaasgssfnqlLGIKGAAQETNKWKIRlqltkpvtwppliwgIVCGaaasgnfhwNLEDVAKSIVCMImsgpcltgytqtiNDWYDREIDainepyrpipsgaisenEVITQIWVLLLAGLGLAGlldvwaghdfptIFWLAVGGSLLSYiysapplklkqngwignFALGasyislpwwagqalfgtltpDIIVLTLLYSIAGLGIAIVNDfksvegdramglqslpvafgpetaKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYflkdpikydvkyqasaqpFLILGLLVTALATSH
Flexible Loop (DISEMBL)
mssvlntvlstrlsnvkstnrvrtrpvlspvsvsfsrrrltvraqepnanevkpqapdkapaASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Low Complexity Region (SEG)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVlllaglglagllDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Disordered region (IsUnstruct)
**********************************************************************LLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTAL****
Disordered Region (DISOPRED)
***********************************************************************************WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Disordered Region (DISEMBL)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQE*******************SSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Disordered Region (DISPRO)
*********************VRTRP*LSPVSVSFSRRRLTVRAQE****************************KGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoo
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	374	2.2.26 [Sep-21-2011]
Q38833	387	Chlorophyll synthase, chl	yes	no	0.997	0.963	0.783	1e-172
Q5W6H5	376	Chlorophyll synthase, chl	yes	no	0.917	0.912	0.853	1e-165
Q9M3W5	378	Chlorophyll synthase, chl	N/A	no	0.919	0.910	0.828	1e-157
P33326	310	Bacteriochlorophyll synth	yes	no	0.756	0.912	0.389	7e-49
Q9Z5D6	302	Bacteriochlorophyll synth	yes	no	0.732	0.907	0.353	1e-40
P26170	304	Bacteriochlorophyll synth	yes	no	0.735	0.904	0.346	3e-39
O27170	281	Digeranylgeranylglyceryl	yes	no	0.620	0.825	0.278	2e-13
Q12VF3	281	Digeranylgeranylglyceryl	yes	no	0.414	0.551	0.313	6e-13
A0B8A0	267	Digeranylgeranylglyceryl	yes	no	0.462	0.647	0.338	8e-13
Q18J00	286	Digeranylgeranylglyceryl	yes	no	0.558	0.730	0.297	9e-13

>sp|Q38833|CHLG_ARATH Chlorophyll synthase, chloroplastic OS=Arabidopsis thaliana GN=CHLG PE=2 SV=1

 Score =  604 bits (1557), Expect = e-172,   Method: Compositional matrix adjust.
 Identities = 304/388 (78%), Positives = 339/388 (87%), Gaps = 15/388 (3%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
           M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct: 1   MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query: 47  PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
            + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct: 61  TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query: 107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
           AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct: 120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query: 167 NEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
            EVITQ+WVLLL GLG+AG+LDVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct: 180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query: 227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
           NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct: 240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query: 287 LPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDP 346
           LPVAFG ETAKWICVGAIDITQ+SVAGYLL +GKPYYALAL+ALI+PQIVFQF+YFLKDP
Sbjct: 300 LPVAFGTETAKWICVGAIDITQLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDP 359

Query: 347 IKYDVKYQASAQPFLILGLLVTALATSH 374
           +KYDVKYQASAQPFL+LG+ VTALA+ H
Sbjct: 360 VKYDVKYQASAQPFLVLGIFVTALASQH 387

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a or b with a preference for geranylgeranyldiphosphate (GGPP) rather than for phytyldiphosphate (PhyPP).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 5EC: .EC: 1EC: .EC: 6EC: 2

>sp|Q5W6H5|CHLG_ORYSJ Chlorophyll synthase, chloroplastic OS=Oryza sativa subsp. japonica GN=CHLG PE=2 SV=1

 Score =  581 bits (1497), Expect = e-165,   Method: Compositional matrix adjust.
 Identities = 296/347 (85%), Positives = 315/347 (90%), Gaps = 4/347 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIR 87
           P S+  +RRR    VRA E +  E K  AP+KAPA  GSSFNQLLGIKGA QE + WKIR
Sbjct: 32  PSSLRLNRRRHFQVVRAAETD-KETKANAPEKAPAG-GSSFNQLLGIKGAKQENDIWKIR 89

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           LQLTKPVTWPPL+WG++CGAAASGNFHW +EDVAKSIVCMIMSGPCLTGYTQTINDWYDR
Sbjct: 90  LQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 149

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           +IDAINEPYRPIPSGAISENEVITQIW LLLAGLGL  LLDVWAGHDFP IF+LAVGGSL
Sbjct: 150 DIDAINEPYRPIPSGAISENEVITQIWALLLAGLGLGALLDVWAGHDFPIIFYLAVGGSL 209

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGI 267
           LSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGLGI
Sbjct: 210 LSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTSLYSIAGLGI 269

Query: 268 AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALAL 327
           AIVNDFKSVEGDRA+GLQSLPVAFG ETAKWICVGAIDITQ+SVAGYL  +GKPYYALAL
Sbjct: 270 AIVNDFKSVEGDRALGLQSLPVAFGMETAKWICVGAIDITQLSVAGYLFSSGKPYYALAL 329

Query: 328 LALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374
           L L +PQ+VFQFQYFLKDP+KYDVKYQASAQPF +LGLLVTALATSH
Sbjct: 330 LGLTIPQVVFQFQYFLKDPVKYDVKYQASAQPFFVLGLLVTALATSH 376

Involved in one of the last steps of the biosynthesis of chlorophyll a.

Oryza sativa subsp. japonica (taxid: 39947)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|Q9M3W5|CHLG_AVESA Chlorophyll synthase, chloroplastic OS=Avena sativa GN=CHLG PE=1 SV=1

 Score =  555 bits (1431), Expect = e-157,   Method: Compositional matrix adjust.
 Identities = 289/349 (82%), Positives = 312/349 (89%), Gaps = 5/349 (1%)

Query: 30  PVSVSFSRRRL--TVRAQEPNANEV--KPQAPDKAPAASGSSFNQLLGIKGAAQETNKWK 85
           P S++ +RRR    V A + +A E   KP  PDKAPAA GSSFNQLLGIKGA QETN WK
Sbjct: 31  PSSLTLNRRRSFPVVCAADADAKETTKKPTIPDKAPAA-GSSFNQLLGIKGAKQETNIWK 89

Query: 86  IRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWY 145
           IRLQLTKPVTWPPL+WG++CGAAASGNFHW +EDV KSIVCM+MSGPCLTGYTQTINDWY
Sbjct: 90  IRLQLTKPVTWPPLVWGVLCGAAASGNFHWTVEDVTKSIVCMLMSGPCLTGYTQTINDWY 149

Query: 146 DREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGG 205
           DR+IDAINEPYRPIPSGAISENEVITQIWVLLL GLGL  LLD+WAGHDFP IF+LA+GG
Sbjct: 150 DRDIDAINEPYRPIPSGAISENEVITQIWVLLLGGLGLGALLDIWAGHDFPIIFYLALGG 209

Query: 206 SLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGL 265
           SLLSYIYSAPPLKLKQNGWIGNFALGASYI LPWWAGQALFGTLTPDI+VLT LYSIAGL
Sbjct: 210 SLLSYIYSAPPLKLKQNGWIGNFALGASYIGLPWWAGQALFGTLTPDIVVLTCLYSIAGL 269

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYAL 325
           GIAIVNDFKS+EGDR +GLQSLPVAFG ETAKWICVGAIDITQ+SVA YLL  GK YYAL
Sbjct: 270 GIAIVNDFKSIEGDRTLGLQSLPVAFGMETAKWICVGAIDITQLSVAAYLLSTGKLYYAL 329

Query: 326 ALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374
           ALL L +PQ++ QFQYFLKDP+KYDVKYQASAQPF + GLLVTALATSH
Sbjct: 330 ALLGLTIPQVILQFQYFLKDPVKYDVKYQASAQPFFVFGLLVTALATSH 378

Involved in one of the last steps of the biosynthesis of chlorophyll a. Catalyzes the esterification of chlorophillide a with either geranylgeranyldiphosphate (GGPP) or phytyldiphosphate (PhyPP). May also use with a lower efficiency the monophosphates GGMP and PhyMP, but not the non-phosphorylated alcohols geranylgeraniol and phytol. The tetraprenyl diphosphate must bind to the enzyme as the first substrate and esterification occurs when this pre-loaded enzyme meets the second substrate, chlorophyllide.

Avena sativa (taxid: 4498)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 6

EC: 2

>sp|P33326|BCHG_CHLAA Bacteriochlorophyll synthase 34 kDa chain OS=Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) GN=bchG PE=4 SV=2

 Score =  194 bits (494), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 114/293 (38%), Positives = 163/293 (55%), Gaps = 10/293 (3%)

Query: 79  QETNKWKIR-LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGY 137
           Q    W +R +QL KPVTW    W  +CGA ASG   WN E + + ++ M M+GP L G 
Sbjct: 23  QSRYAWLVRSIQLMKPVTWFAPTWAFMCGAIASGALGWN-ESIGRLLLGMFMAGPILCGL 81

Query: 138 TQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
           +Q +ND+ DRE+DAINEP+R IPSG +S   V     VL   G  +A  L          
Sbjct: 82  SQVVNDYADREVDAINEPHRLIPSGQVSLRHVYILTAVLTWIGASIALFLGR------QV 135

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT 257
            F++A+G  + +  YS  P++ K+NGWIGN  +  SY  L W AG A F  LT + + + 
Sbjct: 136 AFFVALG-LVFALAYSLRPIRGKRNGWIGNALVAISYEGLAWMAGHAAFAPLTGESVTIA 194

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLG 317
           LLYS+   GI  VNDFKS+ GD  MG++S+PV +G   A  + V  + + QI+V G L  
Sbjct: 195 LLYSLGAHGIMTVNDFKSIRGDTIMGIRSIPVQYGKVMAARMVVTTMGVAQIAVIGLLFH 254

Query: 318 AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTAL 370
            G P  A  +  L+  Q +   + F++DP   +V + A+A    + G+L  A+
Sbjct: 255 WGHPVAATVVAILLAAQSIPNAR-FIRDPENNEVFFNATAIMLYVWGMLAAAI 306

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Chloroflexus aurantiacus (strain ATCC 29366 / DSM 635 / J-10-fl) (taxid: 324602)

>sp|Q9Z5D6|BCHG_RHOS4 Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) GN=bchG PE=4 SV=1

 Score =  167 bits (423), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 101/286 (35%), Positives = 153/286 (53%), Gaps = 12/286 (4%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           L+L +P+TW P IW  +CG  + G   W  E     ++ M+++GP + G +Q  N+W DR
Sbjct: 19  LELIQPITWFPPIWAYLCGTVSVGI--WPGEKWPLVLLGMVLAGPLVCGMSQAANNWCDR 76

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
            +DA+NEP RPIPSG I     +    ++ +  L +  +L  W        F   V G L
Sbjct: 77  HVDAVNEPDRPIPSGRIPGRWGLYIALLMTVLSLAVGWMLGPWG-------FGATVFGVL 129

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLT--LLYSIAGL 265
            ++ YS  P++LK++GW G   +   Y  LPW+ G A+     P   ++T  LLY+    
Sbjct: 130 AAWAYSVEPIRLKRSGWWGPGLVALCYEGLPWFTGAAVLSAGAPSFFIVTVALLYAFGAH 189

Query: 266 GIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYAL 325
           GI  +NDFK++EGDR  G++SLPV  GPE A  +    + + QI V   L+  GKP +A 
Sbjct: 190 GIMTLNDFKALEGDRQHGVRSLPVMLGPEVAAKLACTVMAMAQILVITLLVIWGKPIHAG 249

Query: 326 ALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371
            + AL+V Q+ F  +  L+DP      Y  +     +LG++V A A
Sbjct: 250 IITALLVAQL-FAMRVLLRDPAGKCPWYNGTGVTLYVLGMMVAAFA 294

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter sphaeroides (strain ATCC 17023 / 2.4.1 / NCIB 8253 / DSM 158) (taxid: 272943)

>sp|P26170|BCHG_RHOCB Bacteriochlorophyll synthase 33 kDa chain OS=Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) GN=bchG PE=4 SV=1

 Score =  162 bits (410), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 102/294 (34%), Positives = 159/294 (54%), Gaps = 19/294 (6%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  L+L KPVTW P +W  +CGA +S    W  E+    ++ ++++GP + G +Q  NDW
Sbjct: 17  RAMLELIKPVTWFPPMWAYLCGAVSSNVPIW--ENKGVVVLGIVLAGPIVCGMSQAANDW 74

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLA-GLGLAGLLDVWAGHDFPTIFWLAV 203
            DR +DAINEP+RPIPSG I        +W L +A  + L  L+  W    +   F   +
Sbjct: 75  CDRHVDAINEPHRPIPSGRIP------GLWGLYIAIAMSLLSLVVGWQLGSWG--FVATL 126

Query: 204 GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPD------IIVLT 257
            G   ++ YS  P++LK++GW G   +G +Y  LPW  G A+    T D      I+++ 
Sbjct: 127 LGVAAAWAYSVEPIRLKRSGWWGPGLVGLAYEGLPWITGAAVL-LATADTSPGFPIVMMA 185

Query: 258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLG 317
            LY++   GI  +NDFK++EGDR +G++SLP  +GPE A  I    + + Q  V   L  
Sbjct: 186 TLYALGAHGIMTINDFKAIEGDRKLGIKSLPAVYGPEVAAKIACTVMGLAQALVITMLYL 245

Query: 318 AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371
             KPY+A A+L L+  Q  +    +++DP      Y  +     + G+++TA A
Sbjct: 246 FSKPYHATAVLVLLCGQF-WAMSVWMRDPEGKAPWYNGTGVVMYVSGMMITAFA 298

Catalyzes the esterification of bacteriochlorophyllide a by geranylgeraniol-PPi.

Rhodobacter capsulatus (strain ATCC BAA-309 / NBRC 16581 / SB1003) (taxid: 272942)

>sp|O27170|DGGGP_METTH Digeranylgeranylglyceryl phosphate synthase OS=Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) GN=MTH_1098 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/262 (27%), Positives = 123/262 (46%), Gaps = 30/262 (11%)

Query: 88  LQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR 147
           +++ +PV     +  ++  A  +G F +++  +  S+V         TG    IND++D 
Sbjct: 5   IEILRPVNAVMAVITVMLMALITGRFDFSV--LLASVVVF-----TATGAGNVINDYFDH 57

Query: 148 EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL 207
           EIDAIN P RPIPSG IS    +  ++ ++L    LA L+  + G   P +  + V  SL
Sbjct: 58  EIDAINRPERPIPSGRISRG--VAGVYSIIL--FALASLMGFYLGL-LPGL--VVVSSSL 110

Query: 208 LSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVLTLLYSIAGLG 266
           L   Y+    +LK+   +GN  +  S+++ L +  G  + G +   I+ L     +  + 
Sbjct: 111 LMVYYA---WRLKKRCLVGNITI--SFLTGLSFVFGGIVLGEVRASIL-LGFYAFLMTMA 164

Query: 267 IAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI-SVAGYLLGAGKPYYAL 325
             IV D + VEGDRA G  +LP+  G   +  +    + I  + S + YLLG     Y  
Sbjct: 165 REIVKDMEDVEGDRAEGATTLPITHGMRISGVLAASFMLIASLTSPSLYLLGIFSALY-- 222

Query: 326 ALLALIVPQIVFQFQYFLKDPI 347
                 +P ++     FL+  I
Sbjct: 223 ------IPVLLLAVAVFLRAAI 238

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanothermobacter thermautotrophicus (strain ATCC 29096 / DSM 1053 / JCM 10044 / NBRC 100330 / Delta H) (taxid: 187420)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q12VF3|DGGGP_METBU Digeranylgeranylglyceryl phosphate synthase OS=Methanococcoides burtonii (strain DSM 6242) GN=Mbur_1679 PE=3 SV=1

 Score = 75.5 bits (184), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 53/169 (31%), Positives = 91/169 (53%), Gaps = 14/169 (8%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    +ND++D EID +N+P RPIPSG IS    +     L + G+ LA L++   G 
Sbjct: 55  VTGAGNGLNDYFDIEIDKVNKPSRPIPSGKISLKSALYFSLFLFITGITLAFLVNPLCG- 113

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTL-TP 251
                  +A+  S++  +Y+     LK+  + GN ++G  Y++   +  G A+FG     
Sbjct: 114 ------IIALFNSMVLILYAQ---SLKRTPFFGNASVG--YLTGSTFLFGGAVFGMAGLQ 162

Query: 252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
            ++VL LL ++A +   IV D + + GD+  G ++LP+  G + A +I 
Sbjct: 163 ALVVLFLLATLATIAREIVKDVEDIVGDKKDGARTLPILIGAKKASYIA 211

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanococcoides burtonii (strain DSM 6242) (taxid: 259564)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|A0B8A0|DGGGP_METTP Digeranylgeranylglyceryl phosphate synthase OS=Methanosaeta thermophila (strain DSM 6194 / PT) GN=Mthe_1142 PE=3 SV=1

 Score = 75.1 bits (183), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 66/195 (33%), Positives = 99/195 (50%), Gaps = 22/195 (11%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
           +TG    IND++DREIDA+N P RPIPSG IS    +     L +AG  +AGL++     
Sbjct: 46  ITGGGNAINDYFDREIDAVNRPDRPIPSGRISPRAALIWSVALFIAGCLIAGLIN----- 100

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTL--TP 251
              +   LA+  S +  IY+A   +LK     GN A+  SY++   +    LFG L  +P
Sbjct: 101 --QSCLALALLNSFVLIIYAA---RLKGLPVAGNIAI--SYLTGTTF----LFGGLAASP 149

Query: 252 DIIV--LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI 309
             I   L++L ++A L   IV D + + GD A G ++LP   G    K   + ++ +   
Sbjct: 150 SSITAFLSILSALATLSREIVKDIEDLPGDLAHGAKTLPAFIGKR--KSFVLASLVLIVA 207

Query: 310 SVAGYLLGAGKPYYA 324
            +  YL+  G  Y A
Sbjct: 208 MLLSYLVPLGIDYQA 222

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Methanosaeta thermophila (strain DSM 6194 / PT) (taxid: 349307)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

>sp|Q18J00|DGGGP_HALWD Digeranylgeranylglyceryl phosphate synthase OS=Haloquadratum walsbyi (strain DSM 16790) GN=HQ_1884A PE=3 SV=1

 Score = 75.1 bits (183), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 107/232 (46%), Gaps = 23/232 (9%)

Query: 105 CGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI 164
            GA  +G F      V  ++   I +    T     IND++DR ID IN P RPIP GAI
Sbjct: 30  TGAFVAGGFAVTTAHVTGAVAATIFA----TAAGNAINDYFDRAIDKINRPMRPIPRGAI 85

Query: 165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKL-KQNG 223
           SE   I             +G L V A      +  +A+  +L++ +      +L K   
Sbjct: 86  SERGAIV-----------FSGFLFVAAVVSTSVLPLIAIVLALMNLLALVAYTELFKGLP 134

Query: 224 WIGNFALGASYISLPWWAGQALFGTLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAM 282
            +GN A+ A      +  G A  G +T   ++VL +L ++A     I+ D + ++GDR  
Sbjct: 135 GVGN-AIVAYLTGSTFLFGAAAIGRITDFGVVVLFILAALATATREIIKDIEDLDGDRKE 193

Query: 283 GLQSLPVAFGPETAKWICVGAIDITQI-SVAGYLLGAGKPYYALALLALIVP 333
           GLQ+LP+  G   A  +  G + +  I S+  Y++G    +Y    L L+VP
Sbjct: 194 GLQTLPIVIGVTPAYRVATGVLLVAVIASIVPYVIGIFGIWY----LTLVVP 241

Prenyltransferase that catalyzes the transfer of the geranylgeranyl moiety of geranylgeranyl diphosphate (GGPP) to the C2 hydroxyl of (S)-3-O-geranylgeranylglyceryl phosphate (GGGP). This reaction is the second ether-bond-formation step in the biosynthesis of archaeal membrane lipids.

Haloquadratum walsbyi (strain DSM 16790) (taxid: 362976)

EC: 2

EC: .

EC: 5

EC: .

EC: 1

EC: .

EC: 4

EC: 2

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
338173751	374	chlorophyll synthase [Camellia sinensis]	0.997	0.997	0.88	0.0
449461765	373	PREDICTED: chlorophyll synthase, chlorop	0.997	1.0	0.879	0.0
225439386	370	PREDICTED: chlorophyll synthase, chlorop	0.986	0.997	0.872	0.0
356568120	377	PREDICTED: chlorophyll synthase, chlorop	1.0	0.992	0.835	1e-178
358248480	377	uncharacterized protein LOC100787459 [Gl	1.0	0.992	0.840	1e-178
224087768	372	predicted protein [Populus trichocarpa]	0.994	1.0	0.852	1e-178
228535376	373	chlorophyll synthase [Nicotiana tabacum]	0.997	1.0	0.844	1e-176
228535374	373	chlorophyll synthase [Nicotiana tabacum]	0.997	1.0	0.847	1e-176
255579324	344	bacteriochlorophyll synthase, putative [	0.909	0.988	0.909	1e-174
356559140	378	PREDICTED: chlorophyll synthase, chlorop	1.0	0.989	0.822	1e-174

>gi|338173751|gb|AEI83422.1| chlorophyll synthase [Camellia sinensis]

 Score =  655 bits (1691), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 330/375 (88%), Positives = 356/375 (94%), Gaps = 2/375 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN K TNR+RTR V  P+S+S +RRRLTVRA E +ANE +K +APDK
Sbjct: 1   MASLLNTVSSIRLSNAK-TNRLRTRTVPPPISLSLTRRRLTVRATETDANEAIKAEAPDK 59

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           AP ASGSSFNQLLGIKGA QET+KWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW L+D
Sbjct: 60  APVASGSSFNQLLGIKGAKQETDKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTLDD 119

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCM+MSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL 
Sbjct: 120 VAKSIVCMLMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLG 179

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGW+GNFALGASYISLPW
Sbjct: 180 GLGLAGLLDVWAGHDFPTIFYLAIGGSLLSYIYSAPPLKLKQNGWLGNFALGASYISLPW 239

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAKWI 299

Query: 300 CVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQP 359
           CVGAID+TQ+SVAGYLLGAGKP+YALALL LI+PQ+ FQF+YFLKDP+KYDVKYQASAQP
Sbjct: 300 CVGAIDVTQLSVAGYLLGAGKPFYALALLGLILPQVFFQFKYFLKDPVKYDVKYQASAQP 359

Query: 360 FLILGLLVTALATSH 374
           FLILGLLVTALATSH
Sbjct: 360 FLILGLLVTALATSH 374

Source: Camellia sinensis

Species: Camellia sinensis

Genus: Camellia

Family: Theaceae

Order: Ericales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449461765|ref|XP_004148612.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus] gi|449517004|ref|XP_004165536.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Cucumis sativus]

 Score =  647 bits (1669), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 329/374 (87%), Positives = 351/374 (93%), Gaps = 1/374 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+  LNT+ S RLS++ + NRVR +  LSPVSVSFSRRRL+V A E +ANEVK +A DKA
Sbjct: 1   MALTLNTLPSLRLSSIHA-NRVRFQSSLSPVSVSFSRRRLSVVAAETDANEVKSKASDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PA  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHW +EDV
Sbjct: 60  PAGGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWTIEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSI CM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL G
Sbjct: 120 AKSIACMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFPT+F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGLLDVWAGHDFPTVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWIC 299

Query: 301 VGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPF 360
           VGAIDITQ+SVAGYLLGAGKPYYALALLALI PQ+ FQF+YFLKDP+KYDVKYQASAQPF
Sbjct: 300 VGAIDITQLSVAGYLLGAGKPYYALALLALIGPQVFFQFKYFLKDPVKYDVKYQASAQPF 359

Query: 361 LILGLLVTALATSH 374
           L+LGLLVTALATSH
Sbjct: 360 LVLGLLVTALATSH 373

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439386|ref|XP_002263271.1| PREDICTED: chlorophyll synthase, chloroplastic [Vitis vinifera] gi|296083177|emb|CBI22813.3| unnamed protein product [Vitis vinifera]

 Score =  645 bits (1665), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 327/375 (87%), Positives = 351/375 (93%), Gaps = 6/375 (1%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQAPDK 59
           M+S+LNTV S RLSN ++T R      L P+S+S  RRRL VRA E +ANE VK QAPDK
Sbjct: 1   MASLLNTVSSVRLSNARTTPRF-----LPPISLSLHRRRLVVRAAETDANEAVKSQAPDK 55

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
           APA SGS+FNQLLGIKGAA+ETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWNLED
Sbjct: 56  APAGSGSNFNQLLGIKGAAKETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNLED 115

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           VAKSIVCMIMSGPCLTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIW+LLL 
Sbjct: 116 VAKSIVCMIMSGPCLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWLLLLG 175

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GLGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW
Sbjct: 176 GLGLAGLLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 235

Query: 240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI 299
           WAGQALFGTL PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAKWI
Sbjct: 236 WAGQALFGTLNPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAKWI 295

Query: 300 CVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQP 359
           CVGAIDITQ+SVAGYLLGAGKPYYALAL+ LI+PQ++FQFQYFLKDP+KYDVKYQASAQP
Sbjct: 296 CVGAIDITQLSVAGYLLGAGKPYYALALVGLIIPQVIFQFQYFLKDPVKYDVKYQASAQP 355

Query: 360 FLILGLLVTALATSH 374
           FL+LGLLVTALATSH
Sbjct: 356 FLVLGLLVTALATSH 370

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356568120|ref|XP_003552261.1| PREDICTED: chlorophyll synthase, chloroplastic-like [Glycine max]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 315/377 (83%), Positives = 348/377 (92%), Gaps = 3/377 (0%)

Query: 1   MSSVLNTV-LSTRLS--NVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V + +R+S  +   T  +++RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPSRISPSSHTRTTSLQSRPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GTAPSKDGSSFNQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTMNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETAK 300

Query: 298 WICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASA 357
           WICVGAIDITQ+SVAGYLLGA KP+YALALL LI+PQ+ FQF+YFL+DP+KYDVKYQASA
Sbjct: 301 WICVGAIDITQLSVAGYLLGADKPFYALALLGLIIPQVFFQFKYFLQDPVKYDVKYQASA 360

Query: 358 QPFLILGLLVTALATSH 374
           QPFL+LGLLVTALATSH
Sbjct: 361 QPFLVLGLLVTALATSH 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|358248480|ref|NP_001239633.1| uncharacterized protein LOC100787459 [Glycine max] gi|255647387|gb|ACU24159.1| unknown [Glycine max]

 Score =  631 bits (1628), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 317/377 (84%), Positives = 345/377 (91%), Gaps = 3/377 (0%)

Query: 1   MSSVLNTV-LSTRLSNVKSTN--RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAP 57
           M+S+LN V +  R+S    T    ++ RPVL P SVSFSRRRL++RA E + NEV+ QAP
Sbjct: 1   MASLLNMVSVPPRISPTSHTRIASLQARPVLPPFSVSFSRRRLSIRATETDTNEVQSQAP 60

Query: 58  DKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNL 117
             AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN 
Sbjct: 61  GAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWNF 120

Query: 118 EDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 177
           EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL
Sbjct: 121 EDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRPIPSGAISENEVITQIWVLL 180

Query: 178 LAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL 237
           L GL LAG+LD+WAGHDFP +F+LAVGG+LLSYIYSAPPLKLKQNGWIGNFALGASYISL
Sbjct: 181 LGGLSLAGILDIWAGHDFPIVFYLAVGGALLSYIYSAPPLKLKQNGWIGNFALGASYISL 240

Query: 238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETAK
Sbjct: 241 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGSETAK 300

Query: 298 WICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASA 357
           WICVGAIDITQ+SVAGYLLGA KP+YALALL LI+PQ+ FQF+YFLKDP+KYDVKYQASA
Sbjct: 301 WICVGAIDITQLSVAGYLLGADKPFYALALLGLIIPQVFFQFKYFLKDPVKYDVKYQASA 360

Query: 358 QPFLILGLLVTALATSH 374
           QPFL+LGLLVTALATSH
Sbjct: 361 QPFLVLGLLVTALATSH 377

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224087768|ref|XP_002308227.1| predicted protein [Populus trichocarpa] gi|118486377|gb|ABK95029.1| unknown [Populus trichocarpa] gi|222854203|gb|EEE91750.1| predicted protein [Populus trichocarpa]

 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 319/374 (85%), Positives = 347/374 (92%), Gaps = 2/374 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+SVLN+ LS  LSN KS  RVRT  ++SP+S+  +RRR+T+RA + + NEVKPQAP   
Sbjct: 1   MASVLNSALSLNLSNFKS-KRVRTHSLVSPLSLPLTRRRVTIRAADTDTNEVKPQAPVSG 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
             A GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNF+W LEDV
Sbjct: 60  -GAGGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFNWTLEDV 118

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTIND+YDREIDAINEPYRPIPSGAISENEVITQ+WVLLL G
Sbjct: 119 AKSIVCMLMSGPFLTGYTQTINDYYDREIDAINEPYRPIPSGAISENEVITQLWVLLLGG 178

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAGLLDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 179 LGLAGLLDVWAGHDFPVVFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 238

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWIC
Sbjct: 239 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGAETAKWIC 298

Query: 301 VGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPF 360
           VGAIDITQ+S+AGYLL  GKPYYALAL+ LI+PQIVFQFQYFLKDP+KYDVKYQASAQPF
Sbjct: 299 VGAIDITQLSIAGYLLADGKPYYALALVGLIIPQIVFQFQYFLKDPVKYDVKYQASAQPF 358

Query: 361 LILGLLVTALATSH 374
           L+LGLLVTALATSH
Sbjct: 359 LVLGLLVTALATSH 372

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535376|gb|ACQ44245.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  625 bits (1612), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 316/374 (84%), Positives = 341/374 (91%), Gaps = 1/374 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +S SRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSLSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKS+VCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSVVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAMGLQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMGLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPF 360
           VGAIDITQISVAGYLLGAGKPYYALALL LI PQ+ FQF+YFLKDP+KYDVKYQASAQPF
Sbjct: 300 VGAIDITQISVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPF 359

Query: 361 LILGLLVTALATSH 374
           LILGLLVTALATSH
Sbjct: 360 LILGLLVTALATSH 373

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|228535374|gb|ACQ44244.1| chlorophyll synthase [Nicotiana tabacum]

 Score =  624 bits (1610), Expect = e-176,   Method: Compositional matrix adjust.
 Identities = 317/374 (84%), Positives = 341/374 (91%), Gaps = 1/374 (0%)

Query: 1   MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKA 60
           M+S+LN+V S +LSN  + N +R+  + SP  +SFSRRRL VRA E +  EVK QAPDKA
Sbjct: 1   MASLLNSVPSIKLSNFSNNNPLRSSQISSPFCLSFSRRRLVVRATETD-KEVKAQAPDKA 59

Query: 61  PAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDV 120
           PAA GSS NQ+LGIKGA QET+KWKIR+QLTKPVTWPPL+WG+VCGAAASGNFHW  EDV
Sbjct: 60  PAAGGSSINQILGIKGAKQETDKWKIRVQLTKPVTWPPLVWGVVCGAAASGNFHWTPEDV 119

Query: 121 AKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAG 180
           AKSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAIS  EVI QIWVLLL G
Sbjct: 120 AKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISGQEVINQIWVLLLGG 179

Query: 181 LGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 240
           LGLAG+LDVWAGHDFPTIF+LA+GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW
Sbjct: 180 LGLAGILDVWAGHDFPTIFYLALGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW 239

Query: 241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC 300
           AGQALFGTLTPDIIVLTLLYS+AGLGIAIVNDFKS+EGDRAM LQSLPVAFG E AKWIC
Sbjct: 240 AGQALFGTLTPDIIVLTLLYSVAGLGIAIVNDFKSIEGDRAMRLQSLPVAFGSEAAKWIC 299

Query: 301 VGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPF 360
           VGAIDITQISVAGYLLGAGKPYYALALL LI PQ+ FQF+YFLKDP+KYDVKYQASAQPF
Sbjct: 300 VGAIDITQISVAGYLLGAGKPYYALALLGLIAPQVFFQFKYFLKDPVKYDVKYQASAQPF 359

Query: 361 LILGLLVTALATSH 374
           LILGLLVTALATSH
Sbjct: 360 LILGLLVTALATSH 373

Source: Nicotiana tabacum

Species: Nicotiana tabacum

Genus: Nicotiana

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255579324|ref|XP_002530507.1| bacteriochlorophyll synthase, putative [Ricinus communis] gi|223529964|gb|EEF31891.1| bacteriochlorophyll synthase, putative [Ricinus communis]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/342 (90%), Positives = 329/342 (96%), Gaps = 2/342 (0%)

Query: 35  FSRRRLTVRAQEPNANEVKPQAPDKAPAASGSS--FNQLLGIKGAAQETNKWKIRLQLTK 92
           FS RRLT+RA E +ANEVKP+APDKAPA+S     FNQLLGIKGAAQETNKWKIRLQLTK
Sbjct: 3   FSGRRLTIRATETDANEVKPEAPDKAPASSSGGSSFNQLLGIKGAAQETNKWKIRLQLTK 62

Query: 93  PVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI 152
           PVTWPPL+WG+VCGAAASGNFHWNLEDVAKS+VCM+MSGP LTGYTQTIND+YDREIDAI
Sbjct: 63  PVTWPPLVWGVVCGAAASGNFHWNLEDVAKSVVCMLMSGPFLTGYTQTINDYYDREIDAI 122

Query: 153 NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIY 212
           NEPYRPIPSGAISE+EVITQIWVLLL GLGL GLLDVWAGHDFP +F+LA+GGSLLSYIY
Sbjct: 123 NEPYRPIPSGAISESEVITQIWVLLLGGLGLGGLLDVWAGHDFPIVFYLALGGSLLSYIY 182

Query: 213 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND 272
           SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND
Sbjct: 183 SAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND 242

Query: 273 FKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIV 332
           FKS+EGDRAMGLQSLPVAFG ETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALI+
Sbjct: 243 FKSIEGDRAMGLQSLPVAFGAETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALII 302

Query: 333 PQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH 374
           PQ+VFQFQYFLKDP+KYDVKYQASAQPFL+LGLLVTALATSH
Sbjct: 303 PQVVFQFQYFLKDPVKYDVKYQASAQPFLVLGLLVTALATSH 344

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356559140|ref|XP_003547859.1| PREDICTED: chlorophyll synthase, chloroplastic-like isoform 1 [Glycine max]

 Score =  616 bits (1588), Expect = e-174,   Method: Compositional matrix adjust.
 Identities = 311/378 (82%), Positives = 341/378 (90%), Gaps = 4/378 (1%)

Query: 1   MSSVLNTV-LSTRLSNVKSTN--RVRTRPVLSPVSVSFSRRRLTVRAQEPNANE-VKPQA 56
           M+S+LN V +  R+S    T    ++ RPVL   SVSFSRRR ++RA E + NE ++ QA
Sbjct: 1   MASLLNMVSVPPRISPTSHTRITSLQARPVLPAFSVSFSRRRQSIRATETDTNEAIQSQA 60

Query: 57  PDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWN 116
           P  AP+  GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPL+WG+VCGAAASGNFHWN
Sbjct: 61  PGAAPSKDGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLVWGVVCGAAASGNFHWN 120

Query: 117 LEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVL 176
            EDVAKSIVCM+MSGP LTGYTQT+NDWYDREIDAINEPYR IPSGAISENEVITQIWVL
Sbjct: 121 FEDVAKSIVCMMMSGPFLTGYTQTLNDWYDREIDAINEPYRSIPSGAISENEVITQIWVL 180

Query: 177 LLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS 236
           LL GL LAG+LD+WAGHDFP +F+LAVGG++LSYIYSAPPLKLKQNGWIGNFALGASYIS
Sbjct: 181 LLGGLSLAGILDIWAGHDFPIVFYLAVGGAILSYIYSAPPLKLKQNGWIGNFALGASYIS 240

Query: 237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
           LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA
Sbjct: 241 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGAETA 300

Query: 297 KWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQAS 356
           KWICVGAIDITQ+SVAGYLLGA KP+YALALL LI+PQ+ FQF+YF KDP+KYDVKYQAS
Sbjct: 301 KWICVGAIDITQLSVAGYLLGADKPFYALALLGLIIPQVFFQFKYFRKDPVKYDVKYQAS 360

Query: 357 AQPFLILGLLVTALATSH 374
           AQPFL+LGLLVTALATSH
Sbjct: 361 AQPFLVLGLLVTALATSH 378

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	374
TAIR|locus:2074393	387	G4 [Arabidopsis thaliana (taxi	0.997	0.963	0.760	3.7e-158
TAIR|locus:2044440	393	HPT1 "homogentisate phytyltran	0.534	0.508	0.252	6.5e-08
UNIPROTKB|B1B3P3	410	N8DT-1 "Naringenin 8-dimethyla	0.483	0.441	0.281	1.2e-07
TAIR|locus:4010713740	393	HST "homogentisate prenyltrans	0.681	0.648	0.249	3.1e-07
TIGR_CMR|DET_0401	306	DET_0401 "1,4-dihydroxy-2-naph	0.398	0.486	0.251	8.3e-07
UNIPROTKB|B1B5P4	407	SfN8DT-2 "Naringenin 8-dimethy	0.481	0.442	0.275	1.2e-06
UNIPROTKB|Q9KVP7	284	ubiA "4-hydroxybenzoate octapr	0.684	0.901	0.248	4.7e-05
TIGR_CMR|VC_0094	284	VC_0094 "4-hydroxybenzoate oct	0.684	0.901	0.248	4.7e-05
TIGR_CMR|BA_3186	303	BA_3186 "1,4-dihydroxy-2-napht	0.727	0.897	0.216	0.00015
MGI|MGI:1919133	374	Coq2 "coenzyme Q2 homolog, pre	0.660	0.660	0.256	0.00018

TAIR|locus:2074393 G4 [Arabidopsis thaliana (taxid:3702)]

 Score = 1541 (547.5 bits), Expect = 3.7e-158, P = 3.7e-158
 Identities = 295/388 (76%), Positives = 328/388 (84%)

Query:     1 MSSVLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRR--------------LTVRAQE 46
             M+S+LNTV +   S V S +RV    + +  SV F+RRR                VRA E
Sbjct:     1 MTSILNTVSTIHSSRVTSVDRVGVLSLRNSDSVEFTRRRSGFSTLIYESPGRRFVVRAAE 60

Query:    47 PNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCG 106
              + ++VK Q PDKAPA  GSS NQLLGIKGA+QETNKWKIRLQLTKPVTWPPL+WG+VCG
Sbjct:    61 TDTDKVKSQTPDKAPAG-GSSINQLLGIKGASQETNKWKIRLQLTKPVTWPPLVWGVVCG 119

Query:   107 AAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISE 166
             AAASGNFHW  EDVAKSI+CM+MSGPCLTGYTQTINDWYDR+IDAINEPYRPIPSGAISE
Sbjct:   120 AAASGNFHWTPEDVAKSILCMMMSGPCLTGYTQTINDWYDRDIDAINEPYRPIPSGAISE 179

Query:   167 NEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG 226
              EVITQ+WV            DVWAGH  PT+F+LA+GGSLLSYIYSAPPLKLKQNGW+G
Sbjct:   180 PEVITQVWVLLLGGLGIAGILDVWAGHTTPTVFYLALGGSLLSYIYSAPPLKLKQNGWVG 239

Query:   227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQS 286
             NFALGASYISLPWWAGQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKSVEGDRA+GLQS
Sbjct:   240 NFALGASYISLPWWAGQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSVEGDRALGLQS 299

Query:   287 LPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDP 346
             LPVAFG ETAKWICVGAIDITQ+SVAGYLL +GKPYYALAL+ALI+PQIVFQF+YFLKDP
Sbjct:   300 LPVAFGTETAKWICVGAIDITQLSVAGYLLASGKPYYALALVALIIPQIVFQFKYFLKDP 359

Query:   347 IKYDVKYQASAQPFLILGLLVTALATSH 374
             +KYDVKYQASAQPFL+LG+ VTALA+ H
Sbjct:   360 VKYDVKYQASAQPFLVLGIFVTALASQH 387

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015995 "chlorophyll biosynthetic process" evidence=RCA;TAS

GO:0046408 "chlorophyll synthetase activity" evidence=IDA

GO:0009534 "chloroplast thylakoid" evidence=IDA

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0006364 "rRNA processing" evidence=RCA

GO:0009073 "aromatic amino acid family biosynthetic process" evidence=RCA

GO:0009902 "chloroplast relocation" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0016117 "carotenoid biosynthetic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019344 "cysteine biosynthetic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0034660 "ncRNA metabolic process" evidence=RCA

GO:0042793 "transcription from plastid promoter" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

GO:0009535 "chloroplast thylakoid membrane" evidence=TAS

TAIR|locus:2044440 HPT1 "homogentisate phytyltransferase 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 6.5e-08, P = 6.5e-08
 Identities = 56/222 (25%), Positives = 97/222 (43%)

Query:   120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXX 179
             + +++V  +M    + G    +N   D EID +N+PY P+ SG  S N   T I +    
Sbjct:   138 ILEAVVAALMMNIYIVG----LNQLSDVEIDKVNKPYLPLASGEYSVN---TGIAIVASF 190

Query:   180 XXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASY 234
                       W    +P +FW      +L   YS   P L+ K+   +      A+ A  
Sbjct:   191 SIMSFWLG--WIVGSWP-LFWALFVSFMLGTAYSINLPLLRWKRFALVAAMCILAVRAII 247

Query:   235 ISLPWWAG-QA-LFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPV 289
             + + ++   Q  +FG     T  +I  T   S   + IA+  D   +EGD+  G++S  V
Sbjct:   248 VQIAFYLHIQTHVFGRPILFTRPLIFATAFMSFFSVVIALFKDIPDIEGDKIFGIRSFSV 307

Query:   290 AFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALI 331
               G +   W CV  + +   +VA  L+GA  P+    +++++
Sbjct:   308 TLGQKRVFWTCVTLLQMAY-AVA-ILVGATSPFIWSKVISVV 347

GO:0004659 "prenyltransferase activity" evidence=IEA;IDA

GO:0005886 "plasma membrane" evidence=ISM

GO:0010189 "vitamin E biosynthetic process" evidence=IMP;TAS

GO:0016021 "integral to membrane" evidence=IEA

GO:0009507 "chloroplast" evidence=ISS

GO:0010176 "homogentisate phytyltransferase activity" evidence=IMP;IDA

GO:0042362 "fat-soluble vitamin biosynthetic process" evidence=TAS

GO:0009266 "response to temperature stimulus" evidence=IMP

GO:0009915 "phloem sucrose loading" evidence=IMP

GO:0031347 "regulation of defense response" evidence=IMP

GO:0006636 "unsaturated fatty acid biosynthetic process" evidence=RCA;IMP

GO:0071555 "cell wall organization" evidence=IMP

GO:0000096 "sulfur amino acid metabolic process" evidence=RCA

GO:0006546 "glycine catabolic process" evidence=RCA

GO:0006733 "oxidoreduction coenzyme metabolic process" evidence=RCA

GO:0006766 "vitamin metabolic process" evidence=RCA

GO:0008652 "cellular amino acid biosynthetic process" evidence=RCA

GO:0009072 "aromatic amino acid family metabolic process" evidence=RCA

GO:0009106 "lipoate metabolic process" evidence=RCA

GO:0009108 "coenzyme biosynthetic process" evidence=RCA

GO:0009117 "nucleotide metabolic process" evidence=RCA

GO:0009416 "response to light stimulus" evidence=RCA

GO:0009695 "jasmonic acid biosynthetic process" evidence=RCA

GO:0009965 "leaf morphogenesis" evidence=RCA

GO:0015994 "chlorophyll metabolic process" evidence=RCA

GO:0019216 "regulation of lipid metabolic process" evidence=RCA

GO:0019288 "isopentenyl diphosphate biosynthetic process, mevalonate-independent pathway" evidence=RCA

GO:0019748 "secondary metabolic process" evidence=RCA

GO:0030154 "cell differentiation" evidence=RCA

GO:0031408 "oxylipin biosynthetic process" evidence=RCA

GO:0044272 "sulfur compound biosynthetic process" evidence=RCA

GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

UNIPROTKB|B1B3P3 N8DT-1 "Naringenin 8-dimethylallyltransferase 1, chloroplastic" [Sophora flavescens (taxid:49840)]

 Score = 149 (57.5 bits), Expect = 1.2e-07, P = 1.2e-07
 Identities = 56/199 (28%), Positives = 87/199 (43%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   164 CIHIFGVGLNQLCDIEIDKINKPDLPLASGKLSFRNV-----VIITASSLILGLGFAWIV 218

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIG--NFALGASYI-SLPWWAGQ--AL 245
               +P +FW      +++  Y+   P L+ K+   +   NF    +   SL ++      +
Sbjct:   219 DSWP-LFWTVFISCMVASAYNVDLPLLRWKKYPVLTAINFIADVAVTRSLGFFLHMQTCV 277

Query:   246 FG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
             F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV 
Sbjct:   278 FKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICVS 337

Query:   303 AIDITQISVAGYLLGAGKP 321
              +++T   V   L+GA  P
Sbjct:   338 LLEMTY-GVT-ILVGATSP 354

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:4010713740 HST "homogentisate prenyltransferase" [Arabidopsis thaliana (taxid:3702)]

 Score = 145 (56.1 bits), Expect = 3.1e-07, P = 3.1e-07
 Identities = 71/285 (24%), Positives = 115/285 (40%)

Query:    76 GAAQETNKWKIRLQLTKPVTW----PPLIWGIVCGAAA--SGNFHWNLEDVAKSIVCMIM 129
             GAA+  +    R+   +   W    P  I G   G+ A  +     N   +  S+V   +
Sbjct:    82 GAAESDDPVLDRIARFQNACWRFLRPHTIRGTALGSTALVTRALIENTHLIKWSLVLKAL 141

Query:   130 SGP----CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXX 185
             SG     C  GY   IN  YD  ID +N+PY PI +G +S    +   W+          
Sbjct:   142 SGLLALICGNGYIVGINQIYDIGIDKVNKPYLPIAAGDLS----VQSAWLLVIFFAIAGL 197

Query:   186 XXDVWAGHDF-PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL-----PW 239
                   G +F P I  L   G  L  IYS PPL++K+   +  F + A+          +
Sbjct:   198 LV---VGFNFGPFITSLYSLGLFLGTIYSVPPLRMKRFP-VAAFLIIATVRGFLLNFGVY 253

Query:   240 WAGQALFGT---LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETA 296
              A +A  G     +  +  +T   ++  L IAI  D   VEGDR   + +L    G    
Sbjct:   254 HATRAALGLPFQWSAPVAFITSFVTLFALVIAITKDLPDVEGDRKFQISTLATKLGVRNI 313

Query:   297 KWICVGAI---DITQISVAGYLLGAGKPYYALALLALIVPQIVFQ 338
              ++  G +    ++ IS+A Y+    +    +    ++   ++FQ
Sbjct:   314 AFLGSGLLLVNYVSAISLAFYMPQVFRGSLMIPAHVILASGLIFQ 358

GO:0004161 "dimethylallyltranstransferase activity" evidence=NAS

GO:0004659 "prenyltransferase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0016021 "integral to membrane" evidence=IEA

GO:0010236 "plastoquinone biosynthetic process" evidence=IMP

GO:0010355 "homogentisate farnesyltransferase activity" evidence=IDA

GO:0010356 "homogentisate geranylgeranyltransferase activity" evidence=IDA

GO:0010357 "homogentisate solanesyltransferase activity" evidence=IDA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0009536 "plastid" evidence=IDA

GO:0016117 "carotenoid biosynthetic process" evidence=IMP

TIGR_CMR|DET_0401 DET_0401 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Dehalococcoides ethenogenes 195 (taxid:243164)]

 Score = 139 (54.0 bits), Expect = 8.3e-07, P = 8.3e-07
 Identities = 39/155 (25%), Positives = 75/155 (48%)

Query:   198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS-LPWWAGQALFGTLTPDIIVL 256
             + W+AV G+ +S +YSA P++L  +G +G   +   Y   L  W      G +  D++++
Sbjct:   129 VMWIAVIGAAISILYSAKPMRLAYHG-LGELMMLIGYGPVLTAWGYFVHTGMVNRDVLLI 187

Query:   257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI-CVGAIDITQISVAGYL 315
              ++  +    + ++N+    + DRA G ++L    GP+ AK +  +    +    +A   
Sbjct:   188 GVIPGLCMWAMILINEIPDYQEDRAAGKRNLTYRLGPKNAKNLFSISLAGLYTYILALVF 247

Query:   316 LGAGKPYYALAL--LALIVPQIVFQFQYFLKDPIK 348
              G   P  A++L  + L V  +    +Y+  DPIK
Sbjct:   248 TGVMPPLSAISLGGIPLAVMAVRIAHRYY-NDPIK 281

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

UNIPROTKB|B1B5P4 SfN8DT-2 "Naringenin 8-dimethylallyltransferase" [Sophora flavescens (taxid:49840)]

 Score = 140 (54.3 bits), Expect = 1.2e-06, P = 1.2e-06
 Identities = 55/200 (27%), Positives = 84/200 (42%)

Query:   133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAG 192
             C+  +   +N   D EID IN+P  P+ SG +S   V     V              W  
Sbjct:   161 CIHIFDVGLNQLCDIEIDKINKPDLPLASGNLSFRNV-----VIITASSLILGLGFAWIV 215

Query:   193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQN------GWIGNFALGASYISLPWWAGQA 244
               +P +FW      + +  Y+   P L+ K+        +I N A+  S +         
Sbjct:   216 GSWP-LFWTVFICCMFAAAYNVDLPLLRWKKYPVLTAISFIANVAVTRS-LGFFLHMQTC 273

Query:   245 LFG--TLTP-DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
             +F   T  P  +I  T + SI  + IA+  D   +EGD   G+QSL +  GP+   WICV
Sbjct:   274 VFKRPTTFPRPLIFCTAIVSIYAIVIALFKDIPDMEGDEKFGIQSLSLRLGPKRVFWICV 333

Query:   302 GAIDITQISVAGYLLGAGKP 321
               +++    V   L+GA  P
Sbjct:   334 SLLEMAY-GVT-ILVGATSP 351

GO:0004659 "prenyltransferase activity" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

UNIPROTKB|Q9KVP7 ubiA "4-hydroxybenzoate octaprenyltransferase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)]

 Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 74/298 (24%), Positives = 131/298 (43%)

Query:    84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
             W++ +++ +P+    L+W  +     +      L D+ + +V  ++    +      IND
Sbjct:    10 WQL-MRMDRPIGSLLLLWPTLWALLLAAQ---GLPDL-RVLVVFVLGVFLMRSAGCVIND 64

Query:   144 WYDREIDAI--NEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWL 201
             + DR +D        RP+P+G +S  E +    +            +        TI  L
Sbjct:    65 YADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTL------TI-QL 117

Query:   202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI-SLPW-WAGQALFGTLTPDIIVLTLL 259
             +  G LL+++Y   P  +K+   +    LG ++  S+P  WA QA   TLTP + VL L+
Sbjct:   118 SFIGILLAFVY---PF-MKRFTHLPQLVLGLAFSWSIPMAWAAQA--NTLTPQVWVLFLI 171

Query:   260 YSIAGLGIAIVNDFKSVEGDR--AMGLQSLPVAFGPETAKWICVGAIDITQIS--VA-GY 314
              ++    IA    +  V+ D    +G++S  + FG    K I +G + +  +S  VA G 
Sbjct:   172 NAL--WTIAYDTQYAMVDRDDDVKIGIKSTAILFG-RWDKRI-IGLLQLATLSLLVALGQ 227

Query:   315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFL---ILGLLVTA 369
              L  G  YY      L++   +F +Q  L   I+Y  +     Q FL    +G+ +TA
Sbjct:   228 GLALGTSYY----WGLLIAAGLFAYQQHL---IRYRERMPCF-QAFLNNNYVGMAITA 277

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

TIGR_CMR|VC_0094 VC_0094 "4-hydroxybenzoate octaprenyltransferase" [Vibrio cholerae O1 biovar El Tor (taxid:686)]

 Score = 123 (48.4 bits), Expect = 4.7e-05, P = 4.7e-05
 Identities = 74/298 (24%), Positives = 131/298 (43%)

Query:    84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
             W++ +++ +P+    L+W  +     +      L D+ + +V  ++    +      IND
Sbjct:    10 WQL-MRMDRPIGSLLLLWPTLWALLLAAQ---GLPDL-RVLVVFVLGVFLMRSAGCVIND 64

Query:   144 WYDREIDAI--NEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWL 201
             + DR +D        RP+P+G +S  E +    +            +        TI  L
Sbjct:    65 YADRHVDGHVKRTSQRPLPAGLVSAKEALLLFVLLAVSSFLLVLTMNTL------TI-QL 117

Query:   202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI-SLPW-WAGQALFGTLTPDIIVLTLL 259
             +  G LL+++Y   P  +K+   +    LG ++  S+P  WA QA   TLTP + VL L+
Sbjct:   118 SFIGILLAFVY---PF-MKRFTHLPQLVLGLAFSWSIPMAWAAQA--NTLTPQVWVLFLI 171

Query:   260 YSIAGLGIAIVNDFKSVEGDR--AMGLQSLPVAFGPETAKWICVGAIDITQIS--VA-GY 314
              ++    IA    +  V+ D    +G++S  + FG    K I +G + +  +S  VA G 
Sbjct:   172 NAL--WTIAYDTQYAMVDRDDDVKIGIKSTAILFG-RWDKRI-IGLLQLATLSLLVALGQ 227

Query:   315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFL---ILGLLVTA 369
              L  G  YY      L++   +F +Q  L   I+Y  +     Q FL    +G+ +TA
Sbjct:   228 GLALGTSYY----WGLLIAAGLFAYQQHL---IRYRERMPCF-QAFLNNNYVGMAITA 277

GO:0006744 "ubiquinone biosynthetic process" evidence=ISS

GO:0008412 "4-hydroxybenzoate octaprenyltransferase activity" evidence=ISS

TIGR_CMR|BA_3186 BA_3186 "1,4-dihydroxy-2-naphthoate octaprenyltransferase, putative" [Bacillus anthracis str. Ames (taxid:198094)]

 Score = 119 (46.9 bits), Expect = 0.00015, P = 0.00015
 Identities = 64/296 (21%), Positives = 119/296 (40%)

Query:    84 WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
             WK+    T   T+ P+I G V     +    W L  +A  + C+      L   T   N+
Sbjct:    14 WKMTRPHTLTATFSPVILGTVASLYVA-KIDWLLF-IAMMVACL-----ALQIATNLFNE 66

Query:   144 WYD--REIDAINEPYRPIPSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWL 201
             +YD  R +D  +     I  G +        +               V+   +  + +WL
Sbjct:    67 YYDFKRGLDTADSV--GIGGGIVRHGLKPKNVLTVALLLYVVAAIIGVYICMN--SSWWL 122

Query:   202 AV-G--GSLLSYIYSAPPLKLKQNGW---IGNFALGASYISLPWWAGQALFGTLTPDIIV 255
              V G  G  + Y+Y+  PL +    +   +    +G  ++ + ++  Q    T+T + ++
Sbjct:   123 VVIGLIGMAVGYLYTGGPLPIAYTPFGELVSGLLMGTCFVLIAFFI-QT--NTITTESVL 179

Query:   256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYL 315
             +++   I    I + N+ + +E D   G ++L +  G E A      A  I  + +A  +
Sbjct:   180 ISIPIGILVGAINMSNNIRDIEEDIKGGRKTLVILLGREKAVVTLAIAFFIAYLWIAVIV 239

Query:   316 -LGAGKPYYALALLALIVPQIVFQ-FQYFLKDPIKYDVKYQASAQPFLILGLLVTA 369
              +G   P+  +  L L  P    Q FQ   KDP    +  +++A    I G L++A
Sbjct:   240 WMGYISPWALVMFLGLRKPISAIQSFQKGAKDPGYMRIAMKSTAMTNTIFGFLLSA 295

GO:0009234 "menaquinone biosynthetic process" evidence=ISS

GO:0016765 "transferase activity, transferring alkyl or aryl (other than methyl) groups" evidence=ISS

MGI|MGI:1919133 Coq2 "coenzyme Q2 homolog, prenyltransferase (yeast)" [Mus musculus (taxid:10090)]

 Score = 120 (47.3 bits), Expect = 0.00018, P = 0.00018
 Identities = 75/292 (25%), Positives = 124/292 (42%)

Query:    54 PQAPDKAPAASGSSFNQLLGIKGAAQETNKWK-----IRL-QLTKPV-TWP---PLIWGI 103
             P A D+   A G+   + L +  AA   +  +     +RL +L KP+ TW    P  W I
Sbjct:    38 PGARDRRAPAPGTQRGRALSLSAAAVVNSAPRPLQPYLRLMRLDKPIGTWLLYLPCTWSI 97

Query:   104 VCGAAAS-GNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREID--AINEPYRPI 159
               G AA  G F  W +  +  +   ++    C      TIND +DR+ D        RPI
Sbjct:    98 --GLAADPGCFPDWYMLSLFGTGAILMRGAGC------TINDMWDRDFDKKVTRTANRPI 149

Query:   160 PSGAISENEVITQIWVXXXXXXXXXXXXDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKL 219
              +G IS      Q +V             +   +     + +A+G + L  + + P +K 
Sbjct:   150 AAGDIST----FQSFVFLGGQLTLALGVLLCLNY-----YSIAMGAASLLLVVTYPLVK- 199

Query:   220 KQNGWIGNFALGASYI--SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVND----F 273
             +   W    ALG ++   +L  W+  A+ G+  P  + L L +S  G+   ++ D     
Sbjct:   200 RITFW-PQLALGLTFNWGALLGWS--AVKGSCDP-AVCLPLYFS--GVMWTLIYDTIYAH 253

Query:   274 KSVEGDRAMGLQSLPVAFGPETAKWIC-VGAIDITQISVAGYLLGAGKPYYA 324
             +  + D  +GL+S  + F   T +W+   G   +  +S+AG   G   PYYA
Sbjct:   254 QDKKDDALIGLKSTALLFQENTRQWLSGFGVAMVAALSLAGANNGQTVPYYA 305

GO:0002083 "4-hydroxybenzoate decaprenyltransferase activity" evidence=IEA

GO:0004659 "prenyltransferase activity" evidence=ISO

GO:0005739 "mitochondrion" evidence=IDA

GO:0006071 "glycerol metabolic process" evidence=ISO

GO:0006744 "ubiquinone biosynthetic process" evidence=ISO

GO:0008299 "isoprenoid biosynthetic process" evidence=IEA

GO:0009058 "biosynthetic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0047293 "4-hydroxybenzoate nonaprenyltransferase activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q5W6H5	CHLG_ORYSJ	2, ., 5, ., 1, ., 6, 2	0.8530	0.9171	0.9122	yes	no
Q9M3W5	CHLG_AVESA	2, ., 5, ., 1, ., 6, 2	0.8280	0.9197	0.9100	N/A	no
Q38833	CHLG_ARATH	2, ., 5, ., 1, ., 6, 2	0.7835	0.9973	0.9638	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
4th Layer	2.5.1.62	0.979
3rd Layer	2.5.1	0.983

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00038863001	SubName- Full=Chromosome chr8 scaffold_99, whole genome shotgun sequence; (370 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00016328001	SubName- Full=Chromosome chr17 scaffold_12, whole genome shotgun sequence; (467 aa)	•		•	•		•	•		0.936
	GSVIVG00015396001	SubName- Full=Chromosome chr18 scaffold_1, whole genome shotgun sequence; (534 aa)				•		•	•		0.936
	GSVIVG00025838001	SubName- Full=Chromosome chr12 scaffold_36, whole genome shotgun sequence; (399 aa)				•		•	•		0.925
	GSVIVG00027634001	SubName- Full=Chromosome chr19 scaffold_4, whole genome shotgun sequence; (396 aa)				•		•	•		0.925
	CHLH	SubName- Full=Chromosome chr8 scaffold_34, whole genome shotgun sequence; (1390 aa)	•		•	•			•		0.924
	GSVIVG00021145001	SubName- Full=Chromosome chr1 scaffold_22, whole genome shotgun sequence; (345 aa)				•		•			0.905
	GSVIVG00016740001	SubName- Full=Chromosome chr11 scaffold_13, whole genome shotgun sequence; (517 aa)						•			0.899
	GSVIVG00018037001	SubName- Full=Chromosome chr17 scaffold_16, whole genome shotgun sequence; (328 aa)	•		•	•			•		0.890
	GSVIVG00002992001	SubName- Full=Chromosome chr10 scaffold_138, whole genome shotgun sequence; (289 aa)			•	•			•		0.882
	GSVIVG00017359001	SubName- Full=Chromosome chr6 scaffold_15, whole genome shotgun sequence; (466 aa)	•		•	•		•	•		0.879

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	374
PLN00012	375	PLN00012, PLN00012, chlorophyll synthetase; Provis	0.0
TIGR02056	306	TIGR02056, ChlG, chlorophyll synthase, ChlG	0.0
PRK07566	314	PRK07566, PRK07566, bacteriochlorophyll/chlorophyl	1e-158
TIGR01476	283	TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chl	1e-121
PRK12392	331	PRK12392, PRK12392, bacteriochlorophyll c synthase	1e-50
COG0382	289	COG0382, UbiA, 4-hydroxybenzoate polyprenyltransfe	2e-44
pfam01040	259	pfam01040, UbiA, UbiA prenyltransferase family	2e-32
PRK12884	279	PRK12884, ubiA, prenyltransferase; Reviewed	6e-22
PRK09573	279	PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylgly	1e-21
PRK12882	276	PRK12882, ubiA, prenyltransferase; Reviewed	6e-21
PRK12883	277	PRK12883, ubiA, prenyltransferase UbiA-like protei	8e-18
PRK12887	308	PRK12887, ubiA, tocopherol phytyltransferase; Revi	2e-14
PRK12872	285	PRK12872, ubiA, prenyltransferase; Reviewed	1e-13
COG0109	304	COG0109, CyoE, Polyprenyltransferase (cytochrome o	1e-12
TIGR01475	282	TIGR01475, ubiA_other, putative 4-hydroxybenzoate	4e-12
TIGR01474	281	TIGR01474, ubiA_proteo, 4-hydroxybenzoate polypren	1e-11
PLN02878	280	PLN02878, PLN02878, homogentisate phytyltransferas	1e-08
TIGR01473	280	TIGR01473, cyoE_ctaB, protoheme IX farnesyltransfe	1e-08
PLN02809	289	PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltr	4e-07
PRK12875	282	PRK12875, ubiA, prenyltransferase; Reviewed	5e-07
PRK04375	296	PRK04375, PRK04375, protoheme IX farnesyltransfera	2e-06
COG1575	303	COG1575, MenA, 1,4-dihydroxy-2-naphthoate octapren	3e-06
PLN02922	315	PLN02922, PLN02922, prenyltransferase	5e-06
PRK12886	291	PRK12886, ubiA, prenyltransferase; Reviewed	5e-06
PRK12871	297	PRK12871, ubiA, prenyltransferase; Reviewed	2e-05
PRK05951	296	PRK05951, ubiA, prenyltransferase; Reviewed	3e-05
PRK12848	282	PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransf	3e-05
PRK12888	284	PRK12888, ubiA, prenyltransferase; Reviewed	4e-05
PRK12869	279	PRK12869, ubiA, protoheme IX farnesyltransferase;	2e-04
TIGR02235	285	TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphth	3e-04
PRK12876	300	PRK12876, ubiA, prenyltransferase; Reviewed	6e-04
PRK12847	285	PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransf	7e-04
PRK12870	290	PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransf	9e-04
PRK12324	295	PRK12324, PRK12324, phosphoribose diphosphate:deca	0.003

>gnl|CDD|215028 PLN00012, PLN00012, chlorophyll synthetase; Provisional

 Score =  679 bits (1754), Expect = 0.0
 Identities = 297/373 (79%), Positives = 329/373 (88%), Gaps = 2/373 (0%)

Query: 4   VLNTVLSTRLSNVKSTNRVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDKAPAA 63
           V +  L++ +  ++++ R R     S +S    RRRL VRA E + ++VK QAPDKAP  
Sbjct: 3   VADRSLASSMQALRASARSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEK 62

Query: 64  S--GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVA 121
           S  GS+ NQLLGIKGAAQET+ WKIRLQLTKPVTWPPL+WG++CGAAASGNFHW LEDVA
Sbjct: 63  SDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPPLVWGVLCGAAASGNFHWTLEDVA 122

Query: 122 KSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGL 181
           KSIVCM+MSGP LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL GL
Sbjct: 123 KSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLGGL 182

Query: 182 GLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA 241
           GLA  LDVWAGHDFP +F+LA+GGSLLSYIYSAPPLKLKQNGWIGN+ALGASYISLPWWA
Sbjct: 183 GLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWA 242

Query: 242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV 301
           GQALFGTLTPD++VLTLLYSIAGLGIAIVNDFKS+EGDRA+GLQSLPVAFG ETAKWICV
Sbjct: 243 GQALFGTLTPDVVVLTLLYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICV 302

Query: 302 GAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFL 361
           G+IDITQ+SVAGYLL  GKPYYALALL LI+PQI FQF+YFL DP+K DVKYQASAQPFL
Sbjct: 303 GSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQFKYFLPDPVKNDVKYQASAQPFL 362

Query: 362 ILGLLVTALATSH 374
           + GLLVTALAT H
Sbjct: 363 VFGLLVTALATGH 375

Length = 375

>gnl|CDD|131111 TIGR02056, ChlG, chlorophyll synthase, ChlG

 Score =  545 bits (1405), Expect = 0.0
 Identities = 236/306 (77%), Positives = 269/306 (87%), Gaps = 1/306 (0%)

Query: 70  QLLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMI 128
           QLLGIKGAA  ETN WKIRLQL KP+TW PLIWG+VCGAAASGNFHW+LEDVAK+ +CM+
Sbjct: 1   QLLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCML 60

Query: 129 MSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +SGPCLTGYTQTIND+YDR+IDAINEPYRPIPSGAISE EVITQI +L +AG+ +A +LD
Sbjct: 61  LSGPCLTGYTQTINDFYDRDIDAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILD 120

Query: 189 VWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT 248
           +WAGH+FP +F LA+ GS +++IYSAPPLKLKQNGW+GNFALGASYI+LPWWAG ALFG 
Sbjct: 121 LWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFALGASYIALPWWAGHALFGE 180

Query: 249 LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ 308
           L PDI VLTL+YSIAGLGIAIVNDFKSVEGDRA+GLQSLPVAFG ETA WICVGAIDI Q
Sbjct: 181 LNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQ 240

Query: 309 ISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVT 368
             +A YLL  G+  YA AL+ALI+PQI FQ +YFLKDP+K DVKYQASAQPFL+LG+ V 
Sbjct: 241 GLIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFVA 300

Query: 369 ALATSH 374
           ALA  H
Sbjct: 301 ALALGH 306

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP) [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 306

>gnl|CDD|236052 PRK07566, PRK07566, bacteriochlorophyll/chlorophyll a synthase; Reviewed

 Score =  446 bits (1149), Expect = e-158
 Identities = 167/317 (52%), Positives = 215/317 (67%), Gaps = 10/317 (3%)

Query: 60  APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED 119
               + S   QLLG KGA+  T+ WK RLQL KP+TW P +W  +CGA +SG F W LE+
Sbjct: 3   EALENTSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLEN 62

Query: 120 VAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLA 179
           V K +  M+++GP L G +QT+ND++DRE+DAINEPYRPIPSGAIS   V+  I VL + 
Sbjct: 63  VLKLLAGMLLAGPLLCGTSQTLNDYFDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVL 122

Query: 180 GLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW 239
           GL +A LL  W       +F  A+ G  L++IYSAPPL+LKQNGW+GN+A+G SY  LPW
Sbjct: 123 GLAVAYLLGPW-------VFLAALLGLFLAWIYSAPPLRLKQNGWLGNYAVGLSYEGLPW 175

Query: 240 WAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAK 297
           WAG A FG   P   I++L LLYS+   GI  +NDFKSVEGDR +GL+SLPV FG + A 
Sbjct: 176 WAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAA 235

Query: 298 WICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASA 357
            I    ID+ Q++V   LL  G+P YA  +  L++PQI  Q +  L+DP++ DV Y ASA
Sbjct: 236 RIACVVIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRL-LRDPLERDVWYNASA 294

Query: 358 QPFLILGLLVTALATSH 374
           QPF +LG+LVTALA  H
Sbjct: 295 QPFYVLGMLVTALAIRH 311

Length = 314

>gnl|CDD|130541 TIGR01476, chlor_syn_BchG, bacteriochlorophyll/chlorophyll synthetase

 Score =  350 bits (900), Expect = e-121
 Identities = 134/287 (46%), Positives = 180/287 (62%), Gaps = 6/287 (2%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW 144
           +  ++L KPVTW P IW   CGA ASG      E     ++ M+M+GP  TG++Q+IND+
Sbjct: 1   RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDY 60

Query: 145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVG 204
           +DR++DAINEP RPIPSG IS  EV     VL +AGL +A +L  W       I    V 
Sbjct: 61  FDRDVDAINEPQRPIPSGIISLREVRWNWLVLTVAGLLVALVLGNWL------IVLFTVV 114

Query: 205 GSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           G +L+ IYS PP+KLK+NGW+G  A+G SY  LPW AG A+F  LT   +V+ L+YS+  
Sbjct: 115 GIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHAIFAPLTWQSVVVALIYSLGA 174

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYA 324
            GI  +NDFKSVEGDR +GL+SLPV  G + A  + V  I++ Q  V G LL  G+P+ A
Sbjct: 175 HGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVA 234

Query: 325 LALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371
             +  L+V QI  Q + FL+DP +  V+Y A+A PF +LG+L    A
Sbjct: 235 TIVFLLLVAQIYNQIKLFLRDPQQNYVRYNATANPFYVLGMLAAGFA 281

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana [Biosynthesis of cofactors, prosthetic groups, and carriers, Chlorophyll and bacteriochlorphyll]. Length = 283

>gnl|CDD|171463 PRK12392, PRK12392, bacteriochlorophyll c synthase; Provisional

 Score =  172 bits (437), Expect = 1e-50
 Identities = 93/267 (34%), Positives = 140/267 (52%), Gaps = 2/267 (0%)

Query: 81  TNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
            +K +  L+L  PVTW  +   +  G  ASG     L D    +   +M GP  TG++Q+
Sbjct: 9   VDKIRAHLELLDPVTWISVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQS 68

Query: 141 INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFW 200
           +ND++D E+D +NEP RPIPSG +SE E +    ++LL  +GL   L +  G +   +  
Sbjct: 69  VNDYFDLELDRVNEPTRPIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVII 128

Query: 201 LAV-GGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLL 259
            ++  G  ++YIYSAPPLKLK+N      A+G SY  + + +  ALF  + P+++ L  L
Sbjct: 129 SSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGFITFLSANALFSDIRPEVVWLAGL 188

Query: 260 YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAG 319
                + + I+NDFKSVEGD+  GL+SL V  G +    +    ID+     A      G
Sbjct: 189 NFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAWSWG 248

Query: 320 KPYYALALLALIVPQIVFQFQYFLKDP 346
                  +L  +V  IV Q Q   +DP
Sbjct: 249 FTVLMYFILVGLVLNIVIQIQ-LYRDP 274

Length = 331

>gnl|CDD|223459 COG0382, UbiA, 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

 Score =  154 bits (391), Expect = 2e-44
 Identities = 75/291 (25%), Positives = 121/291 (41%), Gaps = 26/291 (8%)

Query: 84  WKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
               L+L +P+    L+   + G   + +   +L+ +  + +               IND
Sbjct: 13  LLKLLRLDRPIFNLLLLLPALLGLLLAASGLPSLKLLLLAFLAFF----LARSAGYVIND 68

Query: 144 WYDREIDAINEP--YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
             DREID IN     RP+PSG +S  E +    +LLL GL LA LL+  A       F L
Sbjct: 69  LADREIDRINPRTKNRPLPSGRVSVKEALLLAILLLLLGLALALLLNPLA-------FLL 121

Query: 202 AVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYS 261
           ++   +L+  Y      LK+  ++    LG ++         A+ G+L     +L L   
Sbjct: 122 SLAALVLALAY----PFLKRFTFLPQLVLGLAFGLGALAGAAAVGGSLPLLAWLLLLAAI 177

Query: 262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC-VGAIDITQISVAGYLLGAGK 320
           +  LG  I+   + +EGDR  GL+SLPV FG + A  +  +  +    + + G L G   
Sbjct: 178 LWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGLLG 237

Query: 321 PYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA 371
             Y L LL   +          L   +  DV+   +      + LL+  L 
Sbjct: 238 LIYLLGLLVAAL--------LLLYQILIVDVRDPPACFALFDVNLLLGLLL 280

Length = 289

>gnl|CDD|216260 pfam01040, UbiA, UbiA prenyltransferase family

 Score =  122 bits (307), Expect = 2e-32
 Identities = 75/269 (27%), Positives = 119/269 (44%), Gaps = 13/269 (4%)

Query: 98  PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEP 155
           PL    V    A          +   ++  ++    L      +ND++D EIDA   N+P
Sbjct: 2   PLALLPVLAGLALAAGGVLDLLLLLLLLLALL---LLQAAGNVLNDYFDYEIDADNPNKP 58

Query: 156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAP 215
            RP+PSG IS  E +     LLL GL LA LL          +  L + G LL  +YS P
Sbjct: 59  DRPLPSGRISPREALLLGLALLLLGLLLALLLGPL-------LLLLGLLGLLLGLLYS-P 110

Query: 216 PLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKS 275
           PL+LK+   +G   +G ++  L      A+ G +   +++L L   +  L I + ND + 
Sbjct: 111 PLRLKRRPLLGELVVGLAFGLLILLGAYAVGGDIPSPLLLLALPVFLLSLAILLTNDIRD 170

Query: 276 VEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQI 335
           VEGDR  G+++LPV  G + A  +    +    + +   LL        LA+L L +  +
Sbjct: 171 VEGDRKAGIRTLPVRLGRKRALALYALLLAAALLLLLLLLLLLAPLLLLLAVLLLALALL 230

Query: 336 VFQFQYFLKDPIKYDVKYQASAQPFLILG 364
           V       ++P +    +   A  F +L 
Sbjct: 231 VAARLLRRRNPEEPARTFLFIALLFGLLL 259

Length = 259

>gnl|CDD|183812 PRK12884, ubiA, prenyltransferase; Reviewed

 Score = 93.9 bits (234), Expect = 6e-22
 Identities = 63/204 (30%), Positives = 95/204 (46%), Gaps = 20/204 (9%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH 193
            +G    +ND++D E+D IN P RPIPSG IS  E +    +L + GL  A L+   A  
Sbjct: 49  ASGSANALNDYFDYEVDRINRPDRPIPSGRISRREALLLAILLFILGLIAAYLISPLA-- 106

Query: 194 DFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGN----FALGASYISLPWWAGQALFGTL 249
                F + +  S+L  +Y+    KLK+ G IGN    F  G ++I      G    G L
Sbjct: 107 -----FLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI-----FGGIAVGEL 153

Query: 250 TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT-Q 308
              +I+L  +  +  LG  I+ D + VEGDR  G ++L + +G + A  I      +   
Sbjct: 154 NEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVL 213

Query: 309 ISVAGYLLGAGKPYYALALLALIV 332
           +S   YL G     Y   +L   +
Sbjct: 214 LSPLPYLFGIFNILYLAPVLVADL 237

Length = 279

>gnl|CDD|181963 PRK09573, PRK09573, (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

 Score = 92.7 bits (231), Expect = 1e-21
 Identities = 73/273 (26%), Positives = 118/273 (43%), Gaps = 20/273 (7%)

Query: 100 IWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRP 158
           I  I+    AS          +A  +V ++            IND YD EID IN+P RP
Sbjct: 20  IGAIIGYLIASNFKIDLKGIILAALVVFLV------CAGGNVINDIYDIEIDKINKPERP 73

Query: 159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLK 218
           IPSG IS  E       L + GL L+  ++++A       F +A+  S+L Y+Y+     
Sbjct: 74  IPSGRISLKEAKIFSITLFIVGLILSIFINIYA-------FLIALLNSILLYLYA---KD 123

Query: 219 LKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEG 278
           LK+ G IGN  + A    L +  G      +   II+L L    +     IV D + +EG
Sbjct: 124 LKKTGLIGNL-IVAYLTGLSFIFGGLAVFNVLR-IIILFLCAFFSTWSREIVKDIEDIEG 181

Query: 279 DRAMGLQSLPVAFGPETAKWICVGAIDITQ-ISVAGYLLGAGKPYYALALLALIVPQIVF 337
           D    + +LP+ +G + + +I    + +   +S   Y LG    YY + ++   +  I+ 
Sbjct: 182 DLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIFGIYYLIVVIICDILFIIA 241

Query: 338 QFQYFLKDPIKYDVKYQASAQPFLILGLLVTAL 370
                    I+   K     +  +ILGL+   +
Sbjct: 242 MLILLKNPSIEGASKASKYLKIIMILGLIAFLI 274

Length = 279

>gnl|CDD|183811 PRK12882, ubiA, prenyltransferase; Reviewed

 Score = 91.2 bits (227), Expect = 6e-21
 Identities = 66/200 (33%), Positives = 96/200 (48%), Gaps = 15/200 (7%)

Query: 135 TGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD 194
           TG    IND++DREID IN P RPIPSGA+S    +    +L  AG+ LA LL       
Sbjct: 51  TGAGNAINDYFDREIDRINRPDRPIPSGAVSPRGALAFSILLFAAGVALAFLLPPLCLA- 109

Query: 195 FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP-DI 253
                 +A+  SLL  +Y+     LK    +GN ++     S  +  G A  GT     +
Sbjct: 110 ------IALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGST-FLFGGAAVGTEGLLAL 159

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG 313
           +VL  L ++A L   I+ D + +EGDRA G ++LP+  G   A ++         ++VA 
Sbjct: 160 LVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAA---FLLVAVAA 216

Query: 314 YLLGAGKPYYALALLALIVP 333
             L      + L  L L+ P
Sbjct: 217 SPLPYLLSTFGLWYLVLVAP 236

Length = 276

>gnl|CDD|171796 PRK12883, ubiA, prenyltransferase UbiA-like protein; Reviewed

 Score = 82.1 bits (203), Expect = 8e-18
 Identities = 63/201 (31%), Positives = 99/201 (49%), Gaps = 27/201 (13%)

Query: 140 TINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIF 199
           TIND++D EID IN P RP+P GA+S    +    +L   GL LA L+++ A       F
Sbjct: 55  TINDYFDYEIDKINRPNRPLPRGAMSRKAALYYSLLLFAVGLALAYLINIEA-------F 107

Query: 200 WLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA-----LFGTLTPDII 254
             A+G  +L ++Y+    KLK   +IGN  +     + P +   A     L G L     
Sbjct: 108 LFALGAYVLMFLYA---WKLKPLPFIGNVVVALLTGATPIYGAIAVGRIGLAGYLA---- 160

Query: 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGY 314
           +   L ++A     I+ D + +EGD+A G ++LP+  G + A +I  GAI      +A +
Sbjct: 161 ICAFLVNVAR---EIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYI--GAIFGVLTVIASF 215

Query: 315 L---LGAGKPYYALALLALIV 332
           L    G G  Y  + ++  I+
Sbjct: 216 LPVKAGIGLGYLPIIIVDAII 236

Length = 277

>gnl|CDD|183813 PRK12887, ubiA, tocopherol phytyltransferase; Reviewed

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 56/210 (26%), Positives = 88/210 (41%), Gaps = 31/210 (14%)

Query: 100 IWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTG--YTQTINDWYDREIDAINEPYR 157
           + G+   A A+ +    L ++   +   I    CL G  Y   +N   D EID IN+P+ 
Sbjct: 32  VLGLYLIAIAASSNTIALANLGLLLGAWI---ACLCGNVYIVGLNQLTDIEIDRINKPHL 88

Query: 158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPP 216
           P+ +G  S  +    + +  +  L LA LL  W          + VG SLL    YS PP
Sbjct: 89  PLAAGEFSRRQGQRIVIITGILALILAALLGPW--------LLITVGISLLIGTAYSLPP 140

Query: 217 LKLKQ------------NGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAG 264
           ++LK+             G I N  L   ++   W  G +    + P + +LTL   +  
Sbjct: 141 IRLKRFPLLAALCIFTVRGVIVNLGL---FLHFQWLLGGS--VLIPPTVWLLTLFVLVFT 195

Query: 265 LGIAIVNDFKSVEGDRAMGLQSLPVAFGPE 294
             IAI  D   +EGDR   + +  +  G +
Sbjct: 196 FAIAIFKDIPDMEGDRQYQITTFTLRLGKQ 225

Length = 308

>gnl|CDD|237241 PRK12872, ubiA, prenyltransferase; Reviewed

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 60/227 (26%), Positives = 85/227 (37%), Gaps = 27/227 (11%)

Query: 134 LTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGL-AGLLDVWAG 192
              Y   IN   D E D IN+P R       SE +      +L + GL L A LL V  G
Sbjct: 50  AAVYI--INYLTDLEEDIINKPER----VVFSETKAYGLFLLLNVLGLYLGAYLLAVIGG 103

Query: 193 HDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWWAGQALFGTL-- 249
              P    + +   +L  +YS     +LK+     N       +SL W     + G    
Sbjct: 104 ---PKFALIFIIPLILGILYSVFFKRRLKRIPLFKNL-----VVSLLWALSPLILGVYYY 155

Query: 250 TPDIIVLTLLYS----IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID 305
              I  L LLY+    +      IV D K +EGDR  GL++LP+  G E      +    
Sbjct: 156 QLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNL 215

Query: 306 ITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVK 352
           +  I +   +     P   L LL L+         Y++      D K
Sbjct: 216 LFLILLILGVYTGLLPLLLLVLLLLLAY-----VLYYIIKLFAADDK 257

Length = 285

>gnl|CDD|223187 COG0109, CyoE, Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 76/292 (26%), Positives = 119/292 (40%), Gaps = 53/292 (18%)

Query: 83  KWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQT 140
             K  LQLTKP     L+     G   A  G+ +  L      ++  ++ G    G    
Sbjct: 17  TIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINPLL------LLLTLLGGALGAGGAGA 70

Query: 141 INDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW-AGHDFPT 197
            N + DR+IDA+ E    RP+ +G IS  E +    VL +AG  L   L    A      
Sbjct: 71  FNMYIDRDIDALMERTRKRPLVTGLISPREALAFGLVLGVAGFSLLWFLVNLLAA----- 125

Query: 198 IFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGASYISLPWWAG-QALFGTLT 250
              L + G +  Y  +Y+   L LK    QN  IG FA GA    +P   G  A+ G+++
Sbjct: 126 --VLGLFG-IFFYVVVYT---LWLKRRTPQNIVIGGFA-GA----MPPLIGWAAVTGSIS 174

Query: 251 PDIIVLTLL---------YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW-IC 300
              I+L  +         +++A   +   +D+K      A G+  LPV  G    K  I 
Sbjct: 175 LGAILLFAIIFLWTPPHFWALA---LKYKDDYK------AAGIPMLPVVKGERRTKRQIL 225

Query: 301 VGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVK 352
           +  + +  +S+   LLG     Y +    L    +   ++ + KD  K+  K
Sbjct: 226 LYTLALAPVSLLLALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARK 277

Length = 304

>gnl|CDD|233429 TIGR01475, ubiA_other, putative 4-hydroxybenzoate polyprenyltransferase

 Score = 65.8 bits (161), Expect = 4e-12
 Identities = 62/215 (28%), Positives = 100/215 (46%), Gaps = 25/215 (11%)

Query: 140 TINDWYDREIDAIN--EPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
             N   DR IDA N     RP+ SG IS+ E  T I + L   L  +  L+  A      
Sbjct: 54  AFNRIIDRAIDARNPRTKNRPLVSGLISKKEARTMIILSLALFLSASYFLNPLA------ 107

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGT----LTPDI 253
            F L+    L+  IY       K+  ++ ++ LG++Y   P     A+ GT    L   +
Sbjct: 108 -FILSPLVLLVLIIYPY----TKRFTFLCHYVLGSTYGLAPLAGWVAVIGTISFFLVAWL 162

Query: 254 IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS--V 311
           + + + + IAG  +  +   +  E DR  GL S+P  FG + A  I   +  IT I   +
Sbjct: 163 LGIGVGFWIAGFDL--IYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLL 220

Query: 312 AGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDP 346
            G+ +G G     +ALLALI+  ++  +++++ DP
Sbjct: 221 VGFYVGNGY----IALLALILIGLILAYEHYIVDP 251

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 282

>gnl|CDD|130539 TIGR01474, ubiA_proteo, 4-hydroxybenzoate polyprenyl transferase, proteobacterial

 Score = 63.9 bits (156), Expect = 1e-11
 Identities = 57/197 (28%), Positives = 86/197 (43%), Gaps = 18/197 (9%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND +DR+ D   E    RP+ SGA+S  + I  + V LL  LG+   L+       P 
Sbjct: 58  VINDIWDRDFDPQVERTKSRPLASGAVSVRQAILFLLVQLLVALGVLLQLN-------PL 110

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA--SYISLPWWAGQALFGTLTPDIIV 255
              L V    L   Y   P  +K+  +     LG    + +L  WA  A+ G L+    V
Sbjct: 111 TILLGVASLALVATY---PF-MKRITYWPQLVLGLAFGWGALMGWA--AVTGDLSTAAWV 164

Query: 256 LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV-GAIDITQISVAGY 314
           L L   +  LG   +   +  E D  +G++S  + FG  T  W+    A+ I  +++AG 
Sbjct: 165 LYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGL 224

Query: 315 LLGAGKPYYALALLALI 331
           + G G  YY     A +
Sbjct: 225 IAGLGPVYYLGLAAAAL 241

This model represents a family of integral membrane proteins that condenses para-hydroxybenzoate with any of several polyprenyldiphosphates. Heterologous expression studies suggest that for, many but not all members, the activity seen (e.g. octaprenyltransferase in E. coli) reflects available host isoprenyl pools rather than enzyme specificity. A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 281

>gnl|CDD|178466 PLN02878, PLN02878, homogentisate phytyltransferase

 Score = 55.5 bits (134), Expect = 1e-08
 Identities = 46/180 (25%), Positives = 74/180 (41%), Gaps = 16/180 (8%)

Query: 133 CLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAG 192
            +  Y   +N  YD EID +N+PY P+ SG  S    +  +    +   G+  ++  W  
Sbjct: 34  LMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGSWP- 92

Query: 193 HDFPTIFWLAVGGSLLSYIYSA--PPLKLKQNGWIGNF---ALGASYISLPWWA--GQAL 245
                +FW      +L   YS   P L+ K++         A+ A  + L ++      +
Sbjct: 93  -----LFWALFVSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHV 147

Query: 246 FG---TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
            G     T  +I  T       + IA+  D   VEGDR  G++S  V  G +   W+CV 
Sbjct: 148 LGRPAVFTRPLIFATAFMCFFSVVIALFKDIPDVEGDRIFGIRSFSVRLGQKRVFWLCVN 207

Length = 280

>gnl|CDD|233428 TIGR01473, cyoE_ctaB, protoheme IX farnesyltransferase

 Score = 55.3 bits (134), Expect = 1e-08
 Identities = 65/275 (23%), Positives = 105/275 (38%), Gaps = 34/275 (12%)

Query: 85  KIRLQLTKPVTWPPLIWGIVCGAA-ASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTIND 143
           K  LQLTKP     L+     G   A G    N   +  +++   ++           N 
Sbjct: 1   KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNPPLLLLTLLGTTLAA----ASANAFNM 56

Query: 144 WYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWL 201
           + DR+ID   +    RP+ +G IS  E +   + LLL  LG+A L    A  +       
Sbjct: 57  YIDRDIDKKMKRTRNRPLVTGRISPREAL--AFGLLLGVLGVAIL---AAFVNPLAALLG 111

Query: 202 AVGGSLLSYIYSAPPLKLK--QNGWIGNFALGASYISLPWWAG-QALFGTLTPDIIVLTL 258
             G      +Y+   LK +  QN  IG FA GA    +P   G  A+ G+++    +L  
Sbjct: 112 LFGIFFYVIVYTI-WLKRRTPQNTVIGGFA-GA----VPPLIGWAAVTGSISLGAWLLFA 165

Query: 259 LYSI------AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW-ICVGAIDITQISV 311
           +  +        L +   +D+      RA G+  LPV  G    K  I +    +  +S+
Sbjct: 166 IIFLWQPPHFWALALKYKDDY------RAAGIPMLPVVKGERITKRQIALYTAALLPVSL 219

Query: 312 AGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDP 346
               LG     Y +    L    +   F+++    
Sbjct: 220 LLAFLGGTGWLYLIVATLLGALFLYLAFKFYRDPT 254

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor [Biosynthesis of cofactors, prosthetic groups, and carriers, Heme, porphyrin, and cobalamin]. Length = 280

>gnl|CDD|178405 PLN02809, PLN02809, 4-hydroxybenzoate nonaprenyltransferase

 Score = 50.8 bits (122), Expect = 4e-07
 Identities = 61/194 (31%), Positives = 94/194 (48%), Gaps = 25/194 (12%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLA--GLGLAGLLDVWAGHDF 195
           TIND  DR+ID   E    RPI SGA++      Q    L A   LGL  LL +   +++
Sbjct: 63  TINDLLDRDIDKKVERTKLRPIASGALTP----FQGVGFLGAQLLLGLGILLQL---NNY 115

Query: 196 PTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIV 255
             I     G S L  +++ P +K           L  ++ +L  WA  A+ G+L P +++
Sbjct: 116 SRIL----GASSLLLVFTYPLMKRFTFWPQAFLGLTFNWGALLGWA--AVKGSLDPAVVL 169

Query: 256 LTLLYSIAGLGIAIVND----FKSVEGDRAMGLQSLPVAFGPETAKWIC-VGAIDITQIS 310
              LY  +G+   +V D     +  E D  +G++S  + FG +T  W+   GA  I  ++
Sbjct: 170 P--LY-ASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGLA 226

Query: 311 VAGYLLGAGKPYYA 324
           ++GY  G G PYYA
Sbjct: 227 LSGYNAGLGWPYYA 240

Length = 289

>gnl|CDD|237243 PRK12875, ubiA, prenyltransferase; Reviewed

 Score = 50.4 bits (121), Expect = 5e-07
 Identities = 46/166 (27%), Positives = 65/166 (39%), Gaps = 17/166 (10%)

Query: 141 INDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFW 200
           +ND +D + D +N             +  +    V L   L LA LL +      P   W
Sbjct: 64  VNDVFDADTDELNPKKDREREVRYRGDRRVLVA-VALSGALALAFLLVL------PPAAW 116

Query: 201 LAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALF-GTLTPDIIVLTL 258
            A+   L LS  YSAPPL+ K    + +      YI LP  A  AL  G+L P + V   
Sbjct: 117 PALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLYI-LPGVAAYALVSGSLPPLLAVAGG 174

Query: 259 LYSIAGLGI--AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG 302
                G+    AI +    +E DRA G+++     G       C  
Sbjct: 175 WLWAMGMHTFSAIPD----IEPDRAAGIRTTATVLGERRTYAYCAA 216

Length = 282

>gnl|CDD|235293 PRK04375, PRK04375, protoheme IX farnesyltransferase; Provisional

 Score = 48.6 bits (117), Expect = 2e-06
 Identities = 71/276 (25%), Positives = 110/276 (39%), Gaps = 53/276 (19%)

Query: 77  AAQETNKWKIRLQLTKPVTWPPLIWGIVCGA--AASGNFHWNLEDVAKSIVCMIMSGPCL 134
           ++      K  L LTKP      ++  + G   A  G     L      ++  ++    +
Sbjct: 3   SSSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLLL------LLLTLLGIALV 56

Query: 135 TGYTQTINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVW-A 191
            G    +N++ DR+IDA  E    RP+ +G IS  E +    VL + G  L GL     A
Sbjct: 57  AGAAGALNNYIDRDIDAKMERTKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFVNPLA 116

Query: 192 GHDFPTIFWLAVGGSLLSY--IYSAPPLKLK----QNGWIGNFALGASYISLP---WWAG 242
                   WL + G +  Y  +Y+   L LK    QN  IG  A GA    +P    WA 
Sbjct: 117 A-------WLTLAG-IFFYVVVYT---LWLKRRTPQNIVIGGAA-GA----MPPLIGWA- 159

Query: 243 QALFGTLTPDIIVLTLLYSI-------AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPET 295
            A+ G+L+ + ++L L+  +       A L I   +D+ +       G+  LPV  G   
Sbjct: 160 -AVTGSLSWEALILFLIIFLWTPPHFWA-LAIFRKDDYAAA------GIPMLPVVKGIRV 211

Query: 296 AKWICVGAIDITQI-SVAGYLLGAGKPYYALALLAL 330
            K   +    +    S+   LLG     Y +  L L
Sbjct: 212 TKRQILLYTVLLVAVSLLPVLLGMAGLLYLVVALLL 247

Length = 296

>gnl|CDD|224491 COG1575, MenA, 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

 Score = 48.0 bits (115), Expect = 3e-06
 Identities = 63/280 (22%), Positives = 104/280 (37%), Gaps = 30/280 (10%)

Query: 79  QETNKWKIRLQLTKPVTWP----PLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCL 134
           Q+T+K ++ L+L +P T P    P+I G         +F+        +++ +I +    
Sbjct: 3   QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALLALIAAILLQ 57

Query: 135 TGYTQTINDWYD--REIDAINEPYRPIPSGAISENEVIT-QIWVLLLAGL-GLAGLLDVW 190
                  ND++D  +  D  + P R   SG I    +    I  L L  L GLA L  + 
Sbjct: 58  IL-VNLANDYFDYKKGTDT-HGPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVIL 115

Query: 191 AGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG--ASYISLPWWAGQALFGT 248
           A      +  L +       +Y+  P  L   G++G   LG     +          +  
Sbjct: 116 AALSDWLVLLLGLLCIAAGILYTGGPFPL---GYMG---LGEIFVGVFFGPLIVLGAYYI 169

Query: 249 LTPDIIVLTLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPE-TAKWICVGA 303
            T  +    LL S+  G+ IA +   N+ + +E D   G  +L V  G +   K      
Sbjct: 170 QTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALL 229

Query: 304 IDITQISVAGYLLGAGKPYYALALLA--LIVPQIVFQFQY 341
           +      V   +LG    +  L LLA  L +       Q 
Sbjct: 230 VVAYLAIVIFVILGLFPVWGLLFLLALPLAIRAARPVRQN 269

Length = 303

>gnl|CDD|215499 PLN02922, PLN02922, prenyltransferase

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 56/208 (26%), Positives = 81/208 (38%), Gaps = 23/208 (11%)

Query: 181 LGLAGLLDVWAGHDFPTI-FWLAVGGS-LLSYIYSAPPLKLKQNGW--------IGNFAL 230
           LG AGL  VWA      I   L +  + L  Y+Y  PP +L   G          G  A 
Sbjct: 108 LGAAGL--VWASLVAGNIRVILLLAAAILCGYVYQCPPFRLSYKGLGEPLCFAAFGPLAT 165

Query: 231 GASYISLPWWAGQALFGT--LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLP 288
            A Y++L   AG +      LTP ++  ++L  +    I   + F  ++GDRA+G  S  
Sbjct: 166 TAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPL 225

Query: 289 VAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLK---D 345
           V  G E    +   A+ +    +A   L    P     L  L +P       +  K   D
Sbjct: 226 VRLGTEKGSRVVRWAVLLLYSLLAALGLLKALPLPCALLCFLTLPLGKLVVDFVEKNHKD 285

Query: 346 PIK------YDVKYQASAQPFLILGLLV 367
             K      Y V+  A     L LGL++
Sbjct: 286 NAKIFMAKYYCVRLHALFGAALALGLVL 313

Length = 315

>gnl|CDD|237247 PRK12886, ubiA, prenyltransferase; Reviewed

 Score = 47.4 bits (113), Expect = 5e-06
 Identities = 53/183 (28%), Positives = 76/183 (41%), Gaps = 23/183 (12%)

Query: 142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGH-DFPTI 198
           N   D EIDA N     R IP+G IS+   I  I +  L  L  A  L+    +   P +
Sbjct: 62  NRLIDAEIDARNPRTAGRAIPAGLISKGSAILFIVLSSLLMLFAAWFLNPLCLYLSPPAL 121

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
           F+L      L Y Y       K+   + +  LG      P  A  A+ GT+    I+L L
Sbjct: 122 FFL------LLYSYC------KRFTALAHVVLGFCLALAPLGAWIAIRGTIELPAILLGL 169

Query: 259 --LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLL 316
             L+ +AG  I      + +E DR  GL S+P   G   + WI      +  + + G+L 
Sbjct: 170 AVLFWVAGFDILYA--LQDLEFDRKEGLHSIPAKLGVNGSLWIAR----VFHLLMIGFLF 223

Query: 317 GAG 319
             G
Sbjct: 224 ALG 226

Length = 291

>gnl|CDD|106000 PRK12871, ubiA, prenyltransferase; Reviewed

 Score = 45.2 bits (107), Expect = 2e-05
 Identities = 70/266 (26%), Positives = 112/266 (42%), Gaps = 56/266 (21%)

Query: 96  WPPLIW-GIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQ--TINDWYDREIDAI 152
           WP L   G+V   A  G F W L   A  I         L G+     +ND+ DR+ D +
Sbjct: 20  WPLLFCSGLVLAFANYGGFSWELTIKAALI--------GLFGFEAGFVLNDYVDRKRDRL 71

Query: 153 N---------EPY--RPIPSGAISENEVITQIWV-LLLAGLGLAGLLDVWAGHDFPTIFW 200
           +          P+  RPIPSG +S         + +LLA +  A +L +   +    +F 
Sbjct: 72  DVENTLTRYWRPFKERPIPSGKLSSKNAF---ALFILLAAVTSALILTLPYPNSL-YVFV 127

Query: 201 LAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLL- 259
           + +    +   Y     K  Q   +    LG +  +L   AG   +G   PD+  L  + 
Sbjct: 128 IMLYSYGIEAFYQVK--KRNQKYPVAQL-LGRTDFTLFPAAGYLCYGQ--PDMTALLYMV 182

Query: 260 ----YSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE-TAKWIC-------VGAI--- 304
               +++A LG   +NDF  +E DRA G++S+ V +G + T  W+        + AI   
Sbjct: 183 FFYPWTMAHLG---LNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTALHFLAAIFFL 239

Query: 305 -DITQISVAGYLLG----AGKPYYAL 325
            ++  I++ G+L G    AG   Y  
Sbjct: 240 RELGPIALYGFLAGFVLLAGANLYLW 265

Length = 297

>gnl|CDD|180323 PRK05951, ubiA, prenyltransferase; Reviewed

 Score = 45.2 bits (107), Expect = 3e-05
 Identities = 54/239 (22%), Positives = 89/239 (37%), Gaps = 24/239 (10%)

Query: 142 NDWYDREIDAINE-----PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFP 196
           ND+ D  +D  +         PI +G ++   +      L    L L   L +  G    
Sbjct: 60  NDYKDYVLDCDHHETTGYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDRGIGAV 119

Query: 197 TIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVL 256
           T+  L V    L   Y  PP  LK   W+G   +  ++  +       L      ++   
Sbjct: 120 TLALLGV---FLWTCYMGPPFFLKYR-WLGEHLVFYAWSHMLV---MGLIYVWLGNLSSP 172

Query: 257 TLLYSIA-GLGIAIV---NDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVA 312
            LL  +  GL +A+V   N+ + +E D   G+ +L V FG   A       +    I   
Sbjct: 173 NLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGAALYIFALLSPYVILQI 232

Query: 313 GYLLGAGKPYYALALLALIV--PQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTA 369
             +          ALL+L+V     ++Q + F  DP       +A+ Q F++ G L   
Sbjct: 233 LLIAILTPLISLWALLSLLVAYALCLWQLRKFPPDP------DEATVQLFMLFGYLYIL 285

Length = 296

>gnl|CDD|237229 PRK12848, ubiA, 4-hydroxybenzoate octaprenyltransferase; Reviewed

 Score = 44.8 bits (107), Expect = 3e-05
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 9/75 (12%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            IND+ DR+ D   +    RP+ SGA+SE E +    VL+L    L   L+         
Sbjct: 60  VINDYADRDFDGHVKRTKNRPLASGAVSEKEALALFVVLVLVAFLLVLTLN-------TL 112

Query: 198 IFWLAVGGSLLSYIY 212
             WL+V    L++IY
Sbjct: 113 TIWLSVAALALAWIY 127

Length = 282

>gnl|CDD|183814 PRK12888, ubiA, prenyltransferase; Reviewed

 Score = 44.7 bits (106), Expect = 4e-05
 Identities = 67/268 (25%), Positives = 105/268 (39%), Gaps = 23/268 (8%)

Query: 108 AASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYRPIPSGAIS 165
           A+ G+ HW        +V + M G     +    N   DREIDA N     R + +GA+S
Sbjct: 31  ASDGSVHW----ADLLLVTVAMVG--ARTFAMAANRIIDREIDARNPRTAGRELVTGAVS 84

Query: 166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWI 225
                T   V L   LG A LL+       P    LA        +Y       K+    
Sbjct: 85  VRTAWTGALVALAVFLGAAALLN-------PLCLALAPLAVAPLVVYPYA----KRFTNF 133

Query: 226 GNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ 285
            +  LG +    P  A  A+ GT +   ++L L   +   G  ++   +  E DR +G++
Sbjct: 134 PHAILGLAQAVGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVR 193

Query: 286 SLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKD 345
           S+P  FG   A W    A  +T      + L  G  + AL  + L +    F +++ +  
Sbjct: 194 SVPARFGVRAALWASRVAHVVTFALFVWFGLAVG--FGALWWIGLAITAGAFAYEHAIVS 251

Query: 346 PIKYDVKYQA--SAQPFLILGLLVTALA 371
           P       +A  +A  F+ + L   AL 
Sbjct: 252 PTDLSRVNRAFFTANGFVGIALFGFALL 279

Length = 284

>gnl|CDD|237239 PRK12869, ubiA, protoheme IX farnesyltransferase; Reviewed

 Score = 42.4 bits (100), Expect = 2e-04
 Identities = 60/258 (23%), Positives = 97/258 (37%), Gaps = 42/258 (16%)

Query: 97  PPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NE 154
           P +IW +   A A              ++ +++ G   +G +   N   +R+ID +    
Sbjct: 11  PRVIWLLDLAAVAGYFLAAKHGVSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRT 70

Query: 155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSA 214
             RP P G ++  E +     L   G  L  LL          +F +A+G    + +Y+ 
Sbjct: 71  SKRPTPVGLVNRKEALAVGSALSALGTALGFLLL----GPLTALF-IALGWFFYAVVYT- 124

Query: 215 PPLKLKQNGW----IGNFALGASYISLPWWAGQALF-GTLTPDIIVLTLL---------Y 260
             + LK   W    IG FA  A+       AG A   G+L  + ++L+ L         +
Sbjct: 125 --IWLKPRTWLNIVIGGFAGNAAA-----LAGYASGTGSLDLEAVLLSFLIYLWTPGHIW 177

Query: 261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGK 320
           S+A          K  E  R  G+  LP   G +T+    V AI I+   +  Y+L    
Sbjct: 178 SLA---------LKYREDYRRAGVPMLPAVVGEKTS----VRAISISNALMIPYILLLYL 224

Query: 321 PYYALALLALIVPQIVFQ 338
            Y  L  L L+       
Sbjct: 225 YYIGLIGLILVAILSAAL 242

Length = 279

>gnl|CDD|131289 TIGR02235, menA_cyano-plnt, 1,4-dihydroxy-2-naphthoate phytyltransferase

 Score = 41.7 bits (98), Expect = 3e-04
 Identities = 42/172 (24%), Positives = 66/172 (38%), Gaps = 28/172 (16%)

Query: 176 LLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNG------WI--GN 227
           LL+  +G+A L   W      T+  L      L Y+Y  PP +L   G      W+  G 
Sbjct: 90  LLIGLVGIAALSWRWQI----TVLALVGLCCFLGYLYQGPPFRLGYQGLGEPICWLCFGP 145

Query: 228 FALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSL 287
            A+ A+  +           + +      ++L  +A   I   + F  VE D A G +S 
Sbjct: 146 LAIAAALYAQS--------QSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSP 197

Query: 288 PVAFGPETAK----WICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQI 335
            V  G + A     W+   +  +  I+V G  L    P+  L  LA I   +
Sbjct: 198 VVRLGTKLAAKIVPWVISLSYVVLLIAVIGGFL----PWTTLLALASIPWAV 245

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility [Biosynthesis of cofactors, prosthetic groups, and carriers, Menaquinone and ubiquinone]. Length = 285

>gnl|CDD|237244 PRK12876, ubiA, prenyltransferase; Reviewed

 Score = 40.9 bits (96), Expect = 6e-04
 Identities = 54/203 (26%), Positives = 89/203 (43%), Gaps = 24/203 (11%)

Query: 141 INDWYDREIDAIN--EPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTI 198
           +N   D  ID  N     R +P+  +S N  +  + +     L L  LL+       P  
Sbjct: 66  VNQIIDCAIDKKNPRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLLN-------PLC 118

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY---ISLPWWAGQALFGTLTPDIIV 255
           F LAV  +LL  IY       K+  ++ ++ LG  Y   I + ++A       L+  +  
Sbjct: 119 FSLAVLSTLLMIIYPY----TKRVTFLCHWILGLVYYLAILMNFFAIIE--TPLSFSLFC 172

Query: 256 LTLLYSI-AGLGIA---IVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS- 310
           +  L+ I  G+ IA   I+   + +E DR  GL S+P  FG + A  I    +  + I+ 
Sbjct: 173 MASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIASAIAY 232

Query: 311 -VAGYLLGAGKPYYALALLALIV 332
            + GY +   K +Y  +L+ L V
Sbjct: 233 LLIGYFVSNKKIFYLCSLVPLTV 255

Length = 300

>gnl|CDD|237228 PRK12847, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 40.7 bits (96), Expect = 7e-04
 Identities = 51/209 (24%), Positives = 95/209 (45%), Gaps = 18/209 (8%)

Query: 141 INDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTI 198
           IND +DR+ID        RP+ SGA+S  + +  +++LLL  L +  LL+          
Sbjct: 64  INDIFDRKIDKHVARTKNRPLASGALSVKQALILLFILLLIALVILLLLNKTT------- 116

Query: 199 FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL 258
            +L+    +L  +Y   PL +K+  +     LG ++      A  A+   L  + I+L +
Sbjct: 117 IYLSFIAVILIVLY---PL-MKRFFYWPQLFLGFTFNMGILMAFAAVQNQLDIEAILLYI 172

Query: 259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWIC-VGAIDITQISVAGYLLG 317
                 +G   +  ++  + D  +G++S  + FG +T K+I  +  I +    + G +  
Sbjct: 173 GCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWLILGIISS 232

Query: 318 AGKPYYALALLALIVPQIVFQFQYFLKDP 346
               +Y    LA++    +F +QY L D 
Sbjct: 233 LHNIFY----LAILAAAGIFYYQYKLLDF 257

Length = 285

>gnl|CDD|237240 PRK12870, ubiA, 4-hydroxybenzoate polyprenyltransferase; Reviewed

 Score = 40.3 bits (95), Expect = 9e-04
 Identities = 57/240 (23%), Positives = 93/240 (38%), Gaps = 22/240 (9%)

Query: 140 TINDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT 197
            +ND +DR+ID   E   +RP+ S  +S    I    V LL   GLA  L+       P 
Sbjct: 64  VVNDLWDRDIDPQVERTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFLN-------PL 116

Query: 198 IFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY---ISLPWWAGQALFGTLTPDII 254
            FWL V    + ++Y   PL  K+   +    L  ++   + + W A     G L     
Sbjct: 117 SFWLCVAAVPVIFLY---PL-AKRVFPVPQLVLAIAWGFAVLISWSAVT---GHLDLGTW 169

Query: 255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI-CVGAIDITQISVAG 313
           +L        LG   V      E D  +G+ S  + FG    + I    A+ +  +++ G
Sbjct: 170 LLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAILG 229

Query: 314 YLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATS 373
            LL    P++ +  LA+       Q++   +  +      Q   Q   I  LL+  +   
Sbjct: 230 VLLELHLPFW-IG-LAIAAVLWARQYRRLRQANLPPLAYGQLFLQNVWIGFLLLAGMILG 287

Length = 290

>gnl|CDD|237058 PRK12324, PRK12324, phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

 Score = 38.7 bits (91), Expect = 0.003
 Identities = 21/51 (41%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 141 INDWYDREIDAINEP---YRPIPSGAISENEVITQIWVLLLAGLGLAGLLD 188
           +ND  D E D    P    RPI SG +S +       VLL+A L LA LL 
Sbjct: 65  VNDIRDVEADR-LHPTKRNRPIASGVVSVSLAYILAVVLLVASLALAYLLS 114

Length = 295

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	374
PLN00012	375	chlorophyll synthetase; Provisional	100.0
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	100.0
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	100.0
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	100.0
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	100.0
PRK12392	331	bacteriochlorophyll c synthase; Provisional	100.0
PRK05951	296	ubiA prenyltransferase; Reviewed	100.0
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	100.0
PLN02922	315	prenyltransferase	100.0
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	100.0
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	100.0
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12884	279	ubiA prenyltransferase; Reviewed	100.0
PRK12882	276	ubiA prenyltransferase; Reviewed	100.0
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	100.0
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	100.0
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	100.0
PRK12874	291	ubiA prenyltransferase; Reviewed	100.0
PRK04375	296	protoheme IX farnesyltransferase; Provisional	100.0
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	100.0
PRK12886	291	ubiA prenyltransferase; Reviewed	100.0
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	100.0
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	100.0
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	100.0
PRK13105	282	ubiA prenyltransferase; Reviewed	100.0
PRK12888	284	ubiA prenyltransferase; Reviewed	100.0
PRK12895	286	ubiA prenyltransferase; Reviewed	100.0
PRK13362	306	protoheme IX farnesyltransferase; Provisional	100.0
PRK13106	300	ubiA prenyltransferase; Reviewed	100.0
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	100.0
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	100.0
PRK12873	294	ubiA prenyltransferase; Reviewed	100.0
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	100.0
PRK12871	297	ubiA prenyltransferase; Reviewed	100.0
PRK12876	300	ubiA prenyltransferase; Reviewed	100.0
COG0109	304	CyoE Polyprenyltransferase (cytochrome oxidase ass	100.0
PRK13595	292	ubiA prenyltransferase; Provisional	100.0
PLN02776	341	prenyltransferase	99.97
PRK12872	285	ubiA prenyltransferase; Reviewed	99.97
KOG1381	353	consensus Para-hydroxybenzoate-polyprenyl transfer	99.97
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	99.97
PRK12875	282	ubiA prenyltransferase; Reviewed	99.97
PLN02878	280	homogentisate phytyltransferase	99.96
PRK13591	307	ubiA prenyltransferase; Provisional	99.94
PRK13592	299	ubiA prenyltransferase; Provisional	99.93
KOG4581	359	consensus Predicted membrane protein [Function unk	99.9
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	99.88
PRK08238	479	hypothetical protein; Validated	99.86
KOG1380	409	consensus Heme A farnesyltransferase [Coenzyme tra	99.84
PRK12873	294	ubiA prenyltransferase; Reviewed	93.36
COG0382	289	UbiA 4-hydroxybenzoate polyprenyltransferase and r	93.29
PRK12884	279	ubiA prenyltransferase; Reviewed	93.04
TIGR02056	306	ChlG chlorophyll synthase, ChlG. This model repres	93.03
PLN02809	289	4-hydroxybenzoate nonaprenyltransferase	92.64
PRK12324	295	phosphoribose diphosphate:decaprenyl-phosphate pho	91.98
PRK13595	292	ubiA prenyltransferase; Provisional	91.77
PRK12882	276	ubiA prenyltransferase; Reviewed	91.43
PRK12888	284	ubiA prenyltransferase; Reviewed	91.33
TIGR01474	281	ubiA_proteo 4-hydroxybenzoate polyprenyl transfera	91.25
PRK12875	282	ubiA prenyltransferase; Reviewed	90.4
PLN00012	375	chlorophyll synthetase; Provisional	90.36
PRK12883	277	ubiA prenyltransferase UbiA-like protein; Reviewed	90.08
PRK12392	331	bacteriochlorophyll c synthase; Provisional	89.97
PRK12872	285	ubiA prenyltransferase; Reviewed	89.97
PF01040	257	UbiA: UbiA prenyltransferase family; InterPro: IPR	89.97
PRK07566	314	bacteriochlorophyll/chlorophyll a synthase; Review	89.72
PRK12848	282	ubiA 4-hydroxybenzoate octaprenyltransferase; Revi	89.65
PRK05951	296	ubiA prenyltransferase; Reviewed	89.39
PRK12847	285	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	89.32
PRK13591	307	ubiA prenyltransferase; Provisional	89.22
PRK09573	279	(S)-2,3-di-O-geranylgeranylglyceryl phosphate synt	89.22
TIGR01473	280	cyoE_ctaB protoheme IX farnesyltransferase. This m	88.83
PRK12874	291	ubiA prenyltransferase; Reviewed	88.75
PRK12887	308	ubiA tocopherol phytyltransferase; Reviewed	88.58
PRK04375	296	protoheme IX farnesyltransferase; Provisional	88.42
PRK12878	314	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.38
TIGR01475	282	ubiA_other putative 4-hydroxybenzoate polyprenyltr	88.36
PRK13592	299	ubiA prenyltransferase; Provisional	88.25
PRK12870	290	ubiA 4-hydroxybenzoate polyprenyltransferase; Revi	88.1
PRK08238	479	hypothetical protein; Validated	87.99
PRK13362	306	protoheme IX farnesyltransferase; Provisional	87.9
TIGR01476	283	chlor_syn_BchG bacteriochlorophyll/chlorophyll syn	87.85
COG1575	303	MenA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	87.64
PLN02776	341	prenyltransferase	86.94
PRK12895	286	ubiA prenyltransferase; Reviewed	86.51
PRK13106	300	ubiA prenyltransferase; Reviewed	86.42
PRK12869	279	ubiA protoheme IX farnesyltransferase; Reviewed	86.05
PRK12886	291	ubiA prenyltransferase; Reviewed	85.98
PRK12876	300	ubiA prenyltransferase; Reviewed	85.68
TIGR02235	285	menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytylt	85.29
PRK12871	297	ubiA prenyltransferase; Reviewed	84.24
PRK13105	282	ubiA prenyltransferase; Reviewed	83.53
PRK06080	293	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	82.67
PRK07419	304	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	82.58
PRK13387	317	1,4-dihydroxy-2-naphthoate octaprenyltransferase;	82.19
TIGR00751	284	menA 1,4-dihydroxy-2-naphthoate octaprenyltransfer	81.41

>PLN00012 chlorophyll synthetase; Provisional

Probab=100.00  E-value=4.5e-61  Score=474.91  Aligned_cols=354  Identities=82%  Similarity=1.354  Sum_probs=311.0

Q ss_pred             cccccccCCccccccccccchhhccCCCCCCCCCCCCCC--CCcccCCchhhhhhhccccccchhHHHHHhhhCccchHH
Q 017282           21 RVRTRPVLSPVSVSFSRRRLTVRAQEPNANEVKPQAPDK--APAASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPP   98 (374)
Q Consensus        21 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~   98 (374)
                      +.+..+..++.+.+.++||..+|+++++++++|+++||+  |++++++.+|||+++||++++++++|+|++++||++|..
T Consensus        20 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~l~L~RP~t~~~   99 (375)
T PLN00012         20 RSRRPSRPSTLSSPSPRRRLVVRAAETDTDKVKSQAPDKAPEKSDGGSAVNQLLGIKGAAQETDIWKIRLQLTKPVTWPP   99 (375)
T ss_pred             hhccCCCCCCcccccccccceeeecCCcchhhhhcCCCCCccccccchhhHHhhCCCCcccchHHHHHHHHHhCHHHHHH
Confidence            444455566666777999999999999999999998887  455799999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHH
Q 017282           99 LIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  178 (374)
Q Consensus        99 ~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~  178 (374)
                      .++++++|++..+.++|..+++...++++++++.++++++|++|||+|+|+|++|+|+||+++|++++++++..+.++.+
T Consensus       100 ~~~~v~~G~~~~g~~~~~~~~~~~~ll~~ll~~~L~~~~an~iNDy~D~~iD~~~~~~Rpi~sG~Is~~~al~~~~~l~~  179 (375)
T PLN00012        100 LVWGVLCGAAASGNFHWTLEDVAKSIVCMLMSGPFLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLL  179 (375)
T ss_pred             HHHHHHHHHHHcCCCCchhhhHHHHHHHHHHHHHHHHHHHHHHHCeecHhhhccCCCCCCcCCCccCHHHHHHHHHHHHH
Confidence            99999999997777777543333345677778888999999999999999999999999999999999999998888888


Q ss_pred             HHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHH
Q 017282          179 AGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTL  258 (374)
Q Consensus       179 l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~  258 (374)
                      +++.+++++..+.++.++..+.+++++++++++||.||+++||++++||+.+|..++.+|++++++++|.+++..+++++
T Consensus       180 ~~l~l~~~L~~~~~~~~~~~~~l~l~gi~l~~~YS~pPl~lKr~~~~G~v~lG~~~~~lp~~~g~a~~g~~s~~~illal  259 (375)
T PLN00012        180 GGLGLAYTLDVWAGHDFPIVFYLALGGSLLSYIYSAPPLKLKQNGWIGNYALGASYISLPWWAGQALFGTLTPDVVVLTL  259 (375)
T ss_pred             HHHHHHHHHHHHhccccHHHHHHHHHHHHHhhhhcCCchhhhHhccHhHHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            88888887754443346777888888999999999999999999999999999999999988777888999999999999


Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQ  338 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~  338 (374)
                      ++++|+.+++++||++|+|+|+++|+||+||++|++++++++..++.+.+++++++..+.+..+|...+.++.+|+++++
T Consensus       260 ~~~l~~lai~ivnd~~Die~Dr~aG~~TLpV~~G~~~a~~l~~~~l~l~~l~~~~~l~~~~~~~y~~~~~~l~l~~l~~~  339 (375)
T PLN00012        260 LYSIAGLGIAIVNDFKSIEGDRALGLQSLPVAFGVETAKWICVGSIDITQLSVAGYLLAIGKPYYALALLGLIIPQIFFQ  339 (375)
T ss_pred             HHHHHHHHHHHHhhhcchhhHHHcCCcccceeechHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999998877677777777777766665566555667789999999


Q ss_pred             HHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282          339 FQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH  374 (374)
Q Consensus       339 ~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~  374 (374)
                      .+.+++||.+++.+++.++++++++|++.++++++|
T Consensus       340 ~~~~~~~p~~~~~~~~~~a~~~~~~~~l~~~~~~~~  375 (375)
T PLN00012        340 FKYFLPDPVKNDVKYQASAQPFLVFGLLVTALATGH  375 (375)
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            998889999999999999999999999999999998

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=100.00  E-value=1.4e-48  Score=378.59  Aligned_cols=304  Identities=77%  Similarity=1.310  Sum_probs=257.8

Q ss_pred             hhhhcccc-ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccc
Q 017282           71 LLGIKGAA-QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI  149 (374)
Q Consensus        71 ~~~~~~~~-~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~  149 (374)
                      +.+++|.+ ++++++|+|+|++||++|+..++|+++|+...++++|...+....++++++++.++++++|++|||+|+|.
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~ll~~ll~~~l~~~~~n~~NDy~D~d~   81 (306)
T TIGR02056         2 LLGIKGAAPGETNIWKIRLQLMKPITWIPLIWGVVCGAAASGNFHWSLEDVAKAALCMLLSGPCLTGYTQTINDFYDRDI   81 (306)
T ss_pred             CCCcccccccchhHHHHHHHHcChHhhHHHHHHHHHHHHHcCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHhHhhhhh
Confidence            33444443 67788999999999999999999999999877777764221122234555667889999999999999999


Q ss_pred             ccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHH
Q 017282          150 DAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA  229 (374)
Q Consensus       150 D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~  229 (374)
                      |++|+|+||+++|++|+++++.++..+.++++++++++..+.+..++.++.++++++++++.||.||+++||++++||+.
T Consensus        82 D~~~~~~Rpi~~G~is~~~a~~~~~~l~~~~~~lg~~l~~~~~~~~~~~~~l~~~~~~~~~~Yt~gP~~lk~~g~~G~i~  161 (306)
T TIGR02056        82 DAINEPYRPIPSGAISEPEVITQIVLLFIAGIAIAFILDLWAGHEFPNVFVLALFGSFIAFIYSAPPLKLKQNGWLGNFA  161 (306)
T ss_pred             hccCCCCCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHcCChhhhhhcccHHHHH
Confidence            99999999999999999999999999999999999988755443356788899999999999999999999999889999


Q ss_pred             HHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH
Q 017282          230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (374)
Q Consensus       230 vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l  309 (374)
                      +|..++..|++++++++|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..++..+++
T Consensus       162 vg~~~~~~~~~~~~a~~g~~~~~~~l~~~~~~l~~~~i~~~n~~~D~e~D~~~G~~Tlpv~lG~~~a~~~~~~l~~~~~~  241 (306)
T TIGR02056       162 LGASYIALPWWAGHALFGELNPDIAVLTLIYSIAGLGIAIVNDFKSVEGDRALGLQSLPVAFGIETAAWICVGAIDIFQG  241 (306)
T ss_pred             HHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHccChHHHHHcCCcCcchhcChHHHHHHHHHHHHHHHH
Confidence            99999988888777778999999999999999999999999999999999999999999999999999998877666665


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282          310 SVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH  374 (374)
Q Consensus       310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~  374 (374)
                      .++.+....+..++...+.++.+|+.+++.|.+.+||++.+..++.+++.+++.|++.++++++|
T Consensus       242 ~~~~~~~~~~~~~~~~ll~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  306 (306)
T TIGR02056       242 LIAAYLLAIGENLYAAALVALIIPQITFQDKYFLKDPLKNDVKYQASAQPFLVLGIFVAALALGH  306 (306)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHhChHhhCcchhhhhhHHHHHHHHHHHHhhcC
Confidence            55554432233334334566788999999998888999999999999999999999999999987

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=100.00  E-value=1.8e-47  Score=372.10  Aligned_cols=302  Identities=55%  Similarity=0.928  Sum_probs=250.3

Q ss_pred             CCchhhhhhhccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcc
Q 017282           65 GSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDW  144 (374)
Q Consensus        65 ~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~  144 (374)
                      .|.-||++|-||++-++++++.|++++||++|..++++.++|++..+.++|........++++++++.++++++|++|||
T Consensus         8 ~~~~~~~~~~~~~~~~~~~~~~~~~l~RP~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~l~~~l~~~l~~~~~~~~Nd~   87 (314)
T PRK07566          8 TSKPRQLLGPKGASPTTSIWKARLQLMKPITWFPPMWAFLCGAVSSGAFGWTLENVLKLLAGMLLAGPLLCGTSQTLNDY   87 (314)
T ss_pred             ccccccccccccccccchHHHHHHHHhCCcchHHHHHHHHHHHHHcCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            34457899999999999999999999999999999999999988766666642112223455666677789999999999


Q ss_pred             cccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccc
Q 017282          145 YDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGW  224 (374)
Q Consensus       145 ~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~  224 (374)
                      +|+|+|++|+|+||+++|++|+++++.++.++.++++.+++++       ++..+.++++++++++.||.||+++||+++
T Consensus        88 ~D~~~D~~~~~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~l~~~~~~~~Yt~gP~~lK~~~~  160 (314)
T PRK07566         88 FDREVDAINEPYRPIPSGAISLRWVLYLIAVLTVLGLAVAYLL-------GPWVFLAALLGLFLAWIYSAPPLRLKQNGW  160 (314)
T ss_pred             hccCccccCCCCCCCCCceeCHHHHHHHHHHHHHHHHHHHHHH-------ChHHHHHHHHHHHHHHHhcCCccccccccc
Confidence            9999999999999999999999999999999998888888775       455677888888889999999999999998


Q ss_pred             hhhHHHHHHHhHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH
Q 017282          225 IGNFALGASYISLPWWAGQALF--GTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG  302 (374)
Q Consensus       225 ~g~l~vg~~~g~lp~~~~~a~~--g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~  302 (374)
                      +||+++|+++|.+|++++....  +..++..++.+++.+++..+++++||++|+|+|+++|+||+|+++|++++++++..
T Consensus       161 ~g~i~vg~~~g~~~~~~g~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~d~~D~e~D~~aG~~Tlpv~~G~~~a~~l~~~  240 (314)
T PRK07566        161 LGNYAVGLSYEGLPWWAGAAAFGAGLPSWPIVILALLYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVVFGEKNAARIACV  240 (314)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHhHhHHHcCCcccceeEcHHHHHHHHHH
Confidence            8999999999888877654333  36788888888889999999999999999999999999999999999999998877


Q ss_pred             HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhcC
Q 017282          303 AIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATSH  374 (374)
Q Consensus       303 ~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~~  374 (374)
                      .+.+.++.++.+....+..+|...+.++..|+++++.+. .+++++++.+++.+.++.+++++++.++.++|
T Consensus       241 l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  311 (314)
T PRK07566        241 VIDLFQLAVIALLLAWGQPLYAAIVGLLLIPQITLQDRL-LRDPLERDVWYNASAQPFYVLGMLVTALAIRH  311 (314)
T ss_pred             HHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHHHHHH-hhChhhcChhhhhhhhHHHHHHHHHHHHHhcc
Confidence            766666655444333232233223444567787777666 66788889999999999999999999999998

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=100.00  E-value=3.2e-45  Score=351.78  Aligned_cols=283  Identities=47%  Similarity=0.761  Sum_probs=233.0

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcccccc
Q 017282           85 KIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAI  164 (374)
Q Consensus        85 ~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~i  164 (374)
                      |+|++++||++++.+++|+++|.+.++.......++...+++.++++.++++++|++|||+|+|+|++|+|+||+++|++
T Consensus         1 ~~~~~l~rp~t~~~~~~~~~~G~~~a~~~~~~~~~~~~~ll~~~~~~~l~~~~~n~~Nd~~D~~~D~~~~~~Rpi~~G~i   80 (283)
T TIGR01476         1 RAHIELMKPVTWIPPIWACFCGALASGYERGFPEHWWLMLLGMLMAGPLGTGFSQSINDYFDRDVDAINEPQRPIPSGII   80 (283)
T ss_pred             CceeEecCCceehhHHHHHHHHHHhccCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHhHhhhCcccCCCCCCCCCCCCc
Confidence            46899999999999999999999865321111012233455566678889999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHH
Q 017282          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQA  244 (374)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a  244 (374)
                      |+++++..+.++..+++++++++.      ++....+++++.+.++.||.||+++||++++||+.+|++++..|+..++.
T Consensus        81 s~~~a~~~~~~~~~~~~~l~~~l~------~~~~~~l~~~~~~~~~~Ys~~p~~lk~~~~~g~~~vg~~~~~~~~~~~~~  154 (283)
T TIGR01476        81 SLREVRWNWLVLTVAGLLVALVLG------NWLIVLFTVVGIVLAVIYSMPPIKLKRNGWLGPPAVGLSYEGLPWMAGHA  154 (283)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHhheecCchhhhccCCCccHHHHHHHHHHHHHHHHHH
Confidence            999999999999999998888774      33336677788888999999999999999889999999998888877666


Q ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHH
Q 017282          245 LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLGAGKPYYA  324 (374)
Q Consensus       245 ~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~  324 (374)
                      ..++.++..++.+++.++++.+++++||++|+|+|+++|+||+|+++|+|++++++..++.+.++.++.+....+..++.
T Consensus       155 ~~~~~~~~~~~~~~~~~l~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG~~~a~~l~~~l~~~~~~~~~~~~~~~~~~~~~  234 (283)
T TIGR01476       155 IFAPLTWQSVVVALIYSLGAHGIMTLNDFKSVEGDRQLGLRSLPVMIGVKRAAIVAVTTINVFQAMVIGLLLIWGQPWVA  234 (283)
T ss_pred             HhCCCCHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcCcceEEcHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHH
Confidence            66778888888888999999999999999999999999999999999999999998876666665444332222222222


Q ss_pred             HHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHhhc
Q 017282          325 LALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALATS  373 (374)
Q Consensus       325 ~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~~~  373 (374)
                      ..+.++..|.++.+.+.+.+|+++.+..++++++.++++|++.+++|++
T Consensus       235 ~l~~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  283 (283)
T TIGR01476       235 TIVFLLLVAQIYNQIKLFLRDPQQNYVRYNATANPFYVLGMLAAGFALG  283 (283)
T ss_pred             HHHHHHHHHHHHHHHHHHHhChHHhhHHhhhhcHHHHHHHHHHHHHhcC
Confidence            2344566788888888888899999999999999999999999999875

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=1.8e-39  Score=313.48  Aligned_cols=280  Identities=19%  Similarity=0.189  Sum_probs=232.4

Q ss_pred             ccccchhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cc
Q 017282           77 AAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--ID  150 (374)
Q Consensus        77 ~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D  150 (374)
                      .++.+++++.|++.+||+++..++.|+++|.+.+    +.++|.     . .+..++++.++|.++|.+|||+|++  .|
T Consensus         5 ~~~~~~~~~~w~~a~RP~tl~asl~pv~lG~a~a~~~~~~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D   78 (304)
T PRK07419          5 TSMSPSRRKLWLAAIKPPMYSVAIMPILVGTAWALGETGVFRLD-----Q-FITFLLAAILILAWENLSNDVFDADTGID   78 (304)
T ss_pred             ccCCccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4567788999999999999999999999998742    456663     2 3345567778999999999999997  67


Q ss_pred             cccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHH
Q 017282          151 AINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL  230 (374)
Q Consensus       151 ~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~v  230 (374)
                      +. ++. ...++..+++++...+..+++++++++.++....   +|..+.++++++++++.||.||+++||+++ ||+.+
T Consensus        79 ~~-~~~-~~~~~~~~~~~v~~~~~~~~~~a~~~Gl~L~~~~---g~~~l~ig~~g~~~~~~YT~gP~~l~y~gL-GE~~v  152 (304)
T PRK07419         79 KN-KFH-SVVNLTGNKSLVFWLANLFLLLGLLGILAIALQS---DWTVLGLVLLCCFLGYLYQGPPFRLGYQGL-GEPLC  152 (304)
T ss_pred             cc-ccc-CcccccCcHHHHHHHHHHHHHHHHHHHHHHHHhh---cHHHHHHHHHHHHHhheccCCCcccCCCCc-hHHHH
Confidence            74 222 2345555799999999999999999999887654   466788999999999999999999999998 99999


Q ss_pred             HHHHhHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH
Q 017282          231 GASYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI  309 (374)
Q Consensus       231 g~~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l  309 (374)
                      ++++|.+++.+. +.++|.+++..++.++++++.+.+++++||+||+|+|+++||||+|+++|+|++++++..+...+++
T Consensus       153 ~l~~G~l~v~g~~yv~t~~~~~~~~~~sl~~gll~~~IL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~ly~~l~~~ay~  232 (304)
T PRK07419        153 FLAFGPLAVAAALYSQTPSWSLIPLAASIILGLATSLILFCSHFHQVEDDLAAGKRSPIVRLGTKRGAQLLPWIVGLIYA  232 (304)
T ss_pred             HHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCCcchhhHHHcCCcceeeeechHhHHHHHHHHHHHHHH
Confidence            999998887754 7889999999999999999999999999999999999999999999999999999999988888877


Q ss_pred             HHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282          310 SVAG-YLLGAGKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       310 ~l~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      +++. ...+..+++.  .+.++.+|+.++..|.+.+   ++++.+..++.+++.++.+|+++++-
T Consensus       233 ~~i~~v~~g~~p~~~--Ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~g~l~~l~  295 (304)
T PRK07419        233 LELLPVLLGFWPWTT--LLSLLSLPFAIKLIRLVRENHDQPEKVSNSKFIAVRFHFWSGLLLSLG  295 (304)
T ss_pred             HHHHHHHHhhhHHHH--HHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6443 3444444332  3456788999988887654   56778899999999999999998764

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=100.00  E-value=2.1e-39  Score=315.48  Aligned_cols=276  Identities=17%  Similarity=0.170  Sum_probs=228.3

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC----
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE----  154 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~----  154 (374)
                      ++|.|++++||+++..++.|+++|.+.+    +.+||.      ..+..+++..++|+++|++|||+|++.|..++    
T Consensus         2 ~~~~~~~~~Rp~tl~~s~~pvllG~a~a~~~~~~~~~~------~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~~~~~~   75 (317)
T PRK13387          2 SAKLFLKLVEIHTKIASFFPVILGTLFSLYVAKIFDWL------LFLAFMVAMLAFDIATTAINNYMDFKKALDTADYVG   75 (317)
T ss_pred             CHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhCCCccHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCCcccccC
Confidence            4789999999999999999999998743    345652      23444556677899999999999997655443    


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (374)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~  234 (374)
                      ++|++++|.+|+++++..+..+.+++++++.++....   ++..+.++++++++++.||.||+++||+|+ ||+.+++++
T Consensus        76 ~~~~i~~~~ls~~~v~~~~~~~~~ia~~~Gl~L~~~~---g~~~l~igl~g~~~~~~Yt~gP~~l~y~gL-Ge~~v~i~~  151 (317)
T PRK13387         76 IGNGIGQHGLKPRNVLTVILLMYVVAAILGVYLCMNT---SWLLLVIGLICFAIGILYTGGPLPLSRMPL-GEIFSGLTM  151 (317)
T ss_pred             CcchhccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHh---cHHHHHHHHHHHHHhhhhcCCCcccccCcc-HHHHHHHHH
Confidence            7899999999999999999999999999999887654   566889999999999999999999999996 999999999


Q ss_pred             hHHHHHHH-HHHhCCCCHHHHH--------------------HHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          235 ISLPWWAG-QALFGTLTPDIIV--------------------LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       235 g~lp~~~~-~a~~g~~~~~~~l--------------------l~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      |..++.+. +.+++..++..+.                    .+++.++.+.++++.||+||+|+|+++|+||+|+++|+
T Consensus       152 G~~~v~g~~yv~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~slp~g~l~~~ill~Nn~~D~e~D~~~gk~TL~v~lG~  231 (317)
T PRK13387        152 GFGIFLLAVYINTNTITIESLLFQGEMFTIQGNLIAIIAIGVISLPIIFTIANIMLANNLRDLDEDIKNHRYTLVYYIGR  231 (317)
T ss_pred             HHHHHHHHHHHhcCCCchHHHHhcccchhhcchhHHHHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCeeeeeeEcH
Confidence            98776654 6778877776554                    78899999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHH-HHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHH
Q 017282          294 ETAKWICVGAIDITQISV-AGYLLGAGKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTA  369 (374)
Q Consensus       294 ~~a~~l~~~~~~l~~l~l-~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~  369 (374)
                      |++++++..+..++++.+ .....|..+++++  +.++++|+.++..|.+.+   ++++.+..++.+.+.++.+++++.+
T Consensus       232 ~~a~~l~~~l~~~a~l~~~~~v~~g~lp~~~l--l~ll~lP~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~i  309 (317)
T PRK13387        232 EKGVVLFAILFYASYLAIAVIVLMGYISPWAL--LSFLTLRKPISNLQSFQKEAKDPKYFVIAIRNTVLTNTTFGFLLSA  309 (317)
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH--HHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887877654 3345554444333  456788999998887654   4455677889999999999998865


Q ss_pred             H
Q 017282          370 L  370 (374)
Q Consensus       370 ~  370 (374)
                      -
T Consensus       310 ~  310 (317)
T PRK13387        310 S  310 (317)
T ss_pred             H
Confidence            4

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=100.00  E-value=6.9e-39  Score=309.30  Aligned_cols=276  Identities=21%  Similarity=0.263  Sum_probs=228.0

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccc--ccccc--cCC
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDR--EIDAI--NEP  155 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~---g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~--~~D~~--n~~  155 (374)
                      ++|+|++++||+++..+++|+++|.+.+   +.+++.     . .+..+++..++++++|.+|||+|+  |.|+.  ++|
T Consensus         2 ~~~~~~~~~Rp~~~~~~~~p~l~G~~~a~~~~~~~~~-----~-~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~~~~~   75 (293)
T PRK06080          2 TFKAWLELARPKTLPAAFAPVLVGTALAYWLGSFHPL-----L-ALLALLAALLLQIATNLANDYGDYVKGTDTEDRVGP   75 (293)
T ss_pred             CHHHHHHHhhHHHHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHhccCCCcccccCC
Confidence            4789999999999999999999998753   445542     1 333445677889999999999999  46754  458


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (374)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g  235 (374)
                      +||+++|++|+++++..+..+.++++++++++....   ++..+.+++++.++++.||.||.++|++++ ||+.+|+.+|
T Consensus        76 ~r~l~~G~is~~~~~~~~~~~~~~~~~~g~~l~~~~---~~~~~~~~~~~~~~~~~Ys~~p~~~~~~gl-ge~~~~~~~G  151 (293)
T PRK06080         76 LRAIGRGGISPKQVKRAAIAFFGLAALLGLYLVAVS---GWWLLLLGLLCIAAAILYTGGPKPYGYTGL-GELFVGVFFG  151 (293)
T ss_pred             cccccCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHhhhhcCCCCccCCCCc-HHHHHHHHHH
Confidence            999999999999999999999999988888876543   455788888898999999999999999997 8999999999


Q ss_pred             HHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHH-
Q 017282          236 SLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG-  313 (374)
Q Consensus       236 ~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~-  313 (374)
                      ...+.+ .+.+.|++++..++++++.++|+.++++.||++|+|+|+++|+||+|+++|+|++++++..+..++++..+. 
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~n~~~D~~~D~~~G~~Tl~v~lG~~~a~~~~~~l~~~~~~~~~~~  231 (293)
T PRK06080        152 LVIVLGTYYLQAGTVDSAVFLPALPCGLLIGAVLLANNIRDIETDRENGKNTLAVRLGDKNARRLHAALLALAYLCIVLL  231 (293)
T ss_pred             HHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhcCCCcchhHHHcCCeeEEeeECcHhHHHHHHHHHHHHHHHHHHH
Confidence            776654 467788899999999999999999999999999999999999999999999999999999887777765443 


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282          314 YLLGAGKPYYALALLALIVPQIVFQFQYFLK--DPIKYDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       314 ~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      ...+..++++.  +.++.+|+..++.+.+.+  ++++....++.+++.++.+|+++++-
T Consensus       232 ~~~~~~~~~~l--l~ll~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  288 (293)
T PRK06080        232 ALLGLASPWGL--LFLLSLPLAVKAARPVLRKQKPETLIPALKATGKTNLLFGLLFAIG  288 (293)
T ss_pred             HHHhhhhHHHH--HHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444443  345678999988887653  56677888899999999999988653

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=100.00  E-value=1e-38  Score=311.73  Aligned_cols=272  Identities=34%  Similarity=0.524  Sum_probs=208.0

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR  157 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~R  157 (374)
                      .-++++|+|+|++||+++. .++|+++|...+ +....+...+...+.++++.+.+..+++|++|||+|+|+|++|+|.|
T Consensus         7 ~~~~~~k~~l~L~kP~t~l-~~~p~~~g~~lA~g~~~~~~~~~~l~l~~~~~~~~L~~~a~~~iND~~D~~~D~~n~rtR   85 (331)
T PRK12392          7 GFVDKIRAHLELLDPVTWI-SVFPCLAGGVMASGAMQPTLHDYLLLLALFLMYGPLGTGFSQSVNDYFDLELDRVNEPTR   85 (331)
T ss_pred             chhHHHHHHHHHHCHHHHH-HHHHHHHHHHHHcCCCCCChhHHHHHHHHHHHHHHHHHHHHhHHhcceeecccccCCCCC
Confidence            4456899999999998888 778888776643 32211111111122333444555667889999999999999999999


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccc-hhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHD-FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (374)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~-~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~  236 (374)
                      |+++|++|+++++.+..++.++++++++++....+.. .+..+..++++.+++++||.||+++||+++.++..+|++++.
T Consensus        86 pl~~G~is~~~al~~~~~l~~la~~lg~~L~~~~~~~~~~~il~~~~~~l~l~~~YS~~P~~lKr~~~~g~~~vGl~~~~  165 (331)
T PRK12392         86 PIPSGRLSEKEALWNSIIVLLLAIGLGVWLGLHIGGERGMVIISSILAGLFVAYIYSAPPLKLKKNILTSAPAVGFSYGF  165 (331)
T ss_pred             CCCcCCcCHHHHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHhhhhcCCchhhhccchhHHHHHHHHHHH
Confidence            9999999999999999999999999998886543211 233445567788899999999999999998899999999998


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH--HHHHH
Q 017282          237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI--SVAGY  314 (374)
Q Consensus       237 lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l--~l~~~  314 (374)
                      .+++++.+..|++++..+++++..++|+.+++++||++|+|+|++.|+||+|+++|+++++++....+.++.+  ...++
T Consensus       166 ~~~~~~~a~~g~~~~~~~~l~~~~~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G~~~a~~i~~~~~~~~~~~~~~~~~  245 (331)
T PRK12392        166 ITFLSANALFSDIRPEVVWLAGLNFFMAIALIIMNDFKSVEGDKEGGLKSLTVMIGAKNTFLVSFIIIDLVFAVFAWLAW  245 (331)
T ss_pred             HHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHcccchhhHHHcCCeeeEeEEcHhhHHHHHHHHHHHHHHHHHHHHH
Confidence            8887777788989888888888899999999999999999999999999999999999999887765533433  34556


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHH
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQ  354 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~  354 (374)
                      ..+.+..+|...  ++..++++.|.+ ..+||++....++
T Consensus       246 ~~~~~~~~~~~~--~~~~~~~~~q~~-l~r~p~~~~~~~~  282 (331)
T PRK12392        246 SWGFTVLMYFIL--VGLVLNIVIQIQ-LYRDPKGGISFMQ  282 (331)
T ss_pred             HhcccHHHHHHH--HHHHHHHHHHHH-HHhChhhhhHHHh
Confidence            667776666543  345667777765 4566665444333

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-38  Score=307.87  Aligned_cols=273  Identities=17%  Similarity=0.116  Sum_probs=213.8

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC---
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE---  154 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~---  154 (374)
                      +++|.|++++||++++.++.|+++|.+.+    ++++|.      ..+..+++..++|+++|++|||+|++.|..++   
T Consensus         2 ~~~~~~~~~~Rp~tl~~s~~~v~lG~a~a~~~~~~f~~~------~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~~rt   75 (296)
T PRK05951          2 QNAKLFFIFTRPWSFVMTAIVAFFSIAYGYYLFRSFDPL------LGALMLLGYFLLHASLNVFNDYKDYVLDCDHHETT   75 (296)
T ss_pred             ccHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhcCCcCHH------HHHHHHHHHHHHHHHHHHHHhHHHHhcCCcccccc
Confidence            47999999999999999999999998742    456663      23445567778999999999999965554444   


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (374)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~  232 (374)
                        |+||+++|++|+++++..+.++..+++.++.++....   ++..+.++++++++++.||.||+++||+++ ||+.+++
T Consensus        76 ~~~~r~l~~G~is~~~~~~~~~~~~~ia~~~g~~l~~~~---~~~~l~l~~~~~~~~~~Yt~~P~~lky~gl-Ge~~v~~  151 (296)
T PRK05951         76 GYRQHPIQAGIMTLGHLRVLGIALGAIALQLGWSLVLDR---GIGAVTLALLGVFLWTCYMGPPFFLKYRWL-GEHLVFY  151 (296)
T ss_pred             CCCCCccccCCcCHHHHHHHHHHHHHHHHHHHHHHHHhc---cHHHHHHHHHHHHHHHHHcCCCcccCCCCc-hHHHHHH
Confidence              7899999999999999999998888888877764432   455788899999999999999999999988 8999999


Q ss_pred             HHhHHHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHH
Q 017282          233 SYISLPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISV  311 (374)
Q Consensus       233 ~~g~lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l  311 (374)
                      ++|..++++. +.++|.+++..+..+++.++++.++.+.||+||+|+|+++|+||+|+++|+|++ +++......+++.+
T Consensus       152 ~~g~~~vlg~~~~~~~~~~~~~~~~sl~~~l~~~~il~~n~~~D~e~D~~~G~~Tlav~lG~~~a-~~~~~~~~~~~~~~  230 (296)
T PRK05951        152 AWSHMLVMGLIYVWLGNLSSPNLLAGVPLGLLMALVLLSNNLRDIEDDERKGIPTLAVIFGRRGA-ALYIFALLSPYVIL  230 (296)
T ss_pred             HHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHHHHCCCccchhHHHCCCeeeeeeEcHhhH-HHHHHHHHHHHHHH
Confidence            9997766654 678899999999999999999999999999999999999999999999999999 66555555555443


Q ss_pred             HH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHH
Q 017282          312 AG-YLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTA  369 (374)
Q Consensus       312 ~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~  369 (374)
                      +. ...+..+.+  ..+..+.+|..+...+...++.++.+  ...+.+.++.+|+++++
T Consensus       231 ~~~~~~g~~~~~--~l~~ll~lp~~~~~~~~~~~~~~~~~--~~~~~~~~~~~g~l~~~  285 (296)
T PRK05951        231 QILLIAILTPLI--SLWALLSLLVAYALCLWQLRKFPPDP--DEATVQLFMLFGYLYIL  285 (296)
T ss_pred             HHHHHHhhhhHH--HHHHHHHHHHHHHHHHHHHhhCcccc--cHHHHHHHHHHHHHHHH
Confidence            32 233333322  22345677888777775543332222  34688888888887765

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=100.00  E-value=1.6e-38  Score=304.75  Aligned_cols=269  Identities=17%  Similarity=0.193  Sum_probs=221.9

Q ss_pred             CccchHHHHHHHHHHHHhh---CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--ccccc--CCCCCcccccc
Q 017282           92 KPVTWPPLIWGIVCGAAAS---GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAIN--EPYRPIPSGAI  164 (374)
Q Consensus        92 RP~~~~~~~~~~~~G~~~~---g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~n--~~~Rpl~sG~i  164 (374)
                      ||++++.++.|+++|.+.+   +.++|.     . .+..+++..++|.++|.+|||+|++  .|+.+  +|+|++++|.+
T Consensus         1 Rp~tl~~s~~pv~lG~ala~~~~~f~~~-----~-~ll~~~~~~~~q~~~N~~NDy~D~~~G~D~~~~~~~~r~i~~g~i   74 (284)
T TIGR00751         1 RPKTLPLAIAPIVAGTALAAWLHAFVWL-----V-ALLALATAVLLQILSNYANDYGDGIKGSDTDDRIGPLRGVQKGLI   74 (284)
T ss_pred             CCchHHHHHHHHHHHHHHHHHcCCccHH-----H-HHHHHHHHHHHHHHHHHHHhHHHHhcCCChhhccCCcchhcCCCC
Confidence            8999999999999998743   456653     2 3334456778999999999999995  36543  48999999999


Q ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhhccc---hhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHH
Q 017282          165 SENEVITQIWVLLLAGLGLAGLLDVWAGHD---FPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (374)
Q Consensus       165 s~~~a~~~~~~l~~l~l~l~~~l~~~~g~~---~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~  241 (374)
                      ++++++..+..+++++++++.++.+..+..   .+..+.+++++++.++.||.||+++||+++ ||+.+++++|.+++++
T Consensus        75 s~~~v~~~~~~~~~~a~~~Gi~l~~~~~~~~~~~~~~l~lg~~~~~~~~~Yt~gP~~l~y~gL-GE~~v~i~~G~l~v~g  153 (284)
T TIGR00751        75 TPREVKTALITSVALGALSGLVLALLAAPNLSDLFWFIALGALCIAAAITYTVGSKPYGYAGL-GDISVLVFFGPLAVLG  153 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhhHHHHHHHHHHHHHhHhhcCCCCccccCch-HHHHHHHHHHHHHHHH
Confidence            999999999999999999999887654310   014678899999999999999999999998 8999999999888776


Q ss_pred             H-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHH-Hhhhh
Q 017282          242 G-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGY-LLGAG  319 (374)
Q Consensus       242 ~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~-~~~~~  319 (374)
                      . +.++|++++..++.+++.++++.++++.||+||+|+|+++||||+|+++|+|++++++..++..+++..+.. ..+..
T Consensus       154 ~~yvq~~~~~~~~ll~sl~~g~l~~~il~~Nn~~D~~~D~~~Gk~Tl~v~lG~~~a~~l~~~l~~~ay~~~~~~~~~~~~  233 (284)
T TIGR00751       154 TQYLQAHRVDWVGILPAVATGLLACAVLNINNLRDIPTDARAGKNTLAVRLGDARTRMYHQGLLAVAGVCTFVFMLATPI  233 (284)
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHcCcccchhHHHcCCEeehhhcchHhHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            4 688999999999999999999999999999999999999999999999999999999988877777654433 33433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHhHHHHHHHHHHHHH
Q 017282          320 KPYYALALLALIVPQIVFQFQYFL--KDPIKYDVKYQASAQPFLILGLLVTA  369 (374)
Q Consensus       320 ~~~~~~~l~~l~lpl~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~gll~~~  369 (374)
                      ++ +. .+.++.+|+.....|.+.  +++++.+..++++++.++++|+++++
T Consensus       234 p~-~~-ll~ll~lPl~~~~~~~~~~~~~~~~l~~~l~~t~~~~~l~~~l~~i  283 (284)
T TIGR00751       234 SW-WC-VLFLLAAPLLLKAAGPVRSGRGPRELRPVLRDTGLAMLLWNLLFAL  283 (284)
T ss_pred             hH-HH-HHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            33 22 345678899998888664  46678899999999999999999875

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=100.00  E-value=7.3e-38  Score=300.33  Aligned_cols=270  Identities=21%  Similarity=0.193  Sum_probs=221.3

Q ss_pred             HHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccc--ccccCCCCCcc
Q 017282           87 RLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREI--DAINEPYRPIP  160 (374)
Q Consensus        87 ~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~--D~~n~~~Rpl~  160 (374)
                      |++.+||+++..++.|+++|.+.+    +.+||.     .. +..+++..++|.++|.+|||+|++.  |+.+.  ....
T Consensus         2 w~~a~Rp~tl~~s~~pv~lG~alA~~~~~~f~~~-----~~-ll~li~~l~~q~~~N~~Ndy~D~~~G~D~~~~--~~~~   73 (285)
T TIGR02235         2 WLAAIKPPLYSVAVMPILVGTAVAWGQGGVFHLD-----RF-ALFLIAAILILAWINLTNDVFDSDTGIDRFKL--HSIV   73 (285)
T ss_pred             hHHHhhhhHHHHHHHHHHHHHHHHHHcCCCcCHH-----HH-HHHHHHHHHHHHHHHHHHhHHHHhcCCCcccc--CCcc
Confidence            789999999999999999998743    456763     22 3344567789999999999999964  77432  1122


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHH
Q 017282          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (374)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~  240 (374)
                      ++..+++++...+.++..++++++.++....   ++..+.++++++++++.||.||+++||+++ ||+++++++|.+++.
T Consensus        74 ~~~~~~~~v~~~~~~~~~ia~~~g~~L~~~~---~~~~l~lg~~g~~~~~~Yt~gP~~l~y~gL-GE~~v~l~~G~l~v~  149 (285)
T TIGR02235        74 NLTGSRSLVFWLANFFLLIGLVGIAALSWRW---QITVLALVGLCCFLGYLYQGPPFRLGYQGL-GEPICWLCFGPLAIA  149 (285)
T ss_pred             cccCcHHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHhhcCCCcccCCCCc-cHHHHHHHHHHHHHH
Confidence            3334679999989999999999998887654   466788999999999999999999999998 899999999988876


Q ss_pred             H-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHH-HHhhh
Q 017282          241 A-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAG-YLLGA  318 (374)
Q Consensus       241 ~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~-~~~~~  318 (374)
                      + .+.++|++++..++.+++.++.+.++++.||+||+|+|+++||||+|+++|+|++++++..++..++++++. ...+.
T Consensus       150 g~~yvqt~~~~~~~~l~sl~~gl~~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l~~~l~~~~y~~~i~~v~~~~  229 (285)
T TIGR02235       150 AALYAQSQSFSLIPWKASILVGLATTLILFCSHFHQVEDDLAHGKRSPVVRLGTKLAAKIVPWVISLSYVVLLIAVIGGF  229 (285)
T ss_pred             HHHHHhCCcCcHHHHHHHHHHHHHHHHHHHhcCCccchhHHHcCCcceeheecHHhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            5 478899999999999999999999999999999999999999999999999999999999888888876443 34443


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhc---CcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282          319 GKPYYALALLALIVPQIVFQFQYFLK---DPIKYDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       319 ~~~~~~~~l~~l~lpl~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      .++  ...+.++++|+.++..|.+.+   ++++.+..++.+++.++.+|+++++-
T Consensus       230 ~p~--~~ll~ll~lPl~~~~~~~~~~~~~~~~~l~~~l~~t~~~~~~~g~l~~~g  282 (285)
T TIGR02235       230 LPW--TTLLALASIPWAVKLIRLVRQNHNNPEQISNCKFIAVRFHFLSGILLTLG  282 (285)
T ss_pred             hHH--HHHHHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            332  223566788999988887643   66677889999999999999998764

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PLN02922 prenyltransferase

Probab=100.00  E-value=1.1e-37  Score=302.60  Aligned_cols=278  Identities=22%  Similarity=0.238  Sum_probs=216.2

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cccc
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~  152 (374)
                      ++.+++|.|++++||+++..+++|+++|.+.+    +.++|.     . .+..+++..++|.++|++|||+|++  .|+.
T Consensus        10 ~~~~~~~~w~~a~Rp~tl~~s~~pv~lG~a~A~~~~g~f~~~-----~-~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~   83 (315)
T PLN02922         10 EELSRATLWWRAIKLPMYSVALVPLTVGAAAAYLQTGLFDAR-----R-YGTLLLSSVLVITWLNLSNDAYDADTGVDKN   83 (315)
T ss_pred             CCccHHHHHHHHhCcchHHHHHHHHHHHHHHHHHcCCCccHH-----H-HHHHHHHHHHHHHHHHHHhhhhHhccCcCcc
Confidence            67789999999999999999999999998742    567763     2 2334556778999999999999986  5765


Q ss_pred             cC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHH
Q 017282          153 NE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFAL  230 (374)
Q Consensus       153 n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~v  230 (374)
                      ++  +.|+  .|  |+++++..+..+.++++. +.++.... ..++..+++|++++++++.||.||+|+||+|+ ||+.+
T Consensus        84 ~~~~~~~~--~~--s~~~v~~~~~~~~~la~~-g~~ll~~~-~~~~~~l~iG~~g~~~~~~Yt~gP~pl~y~gL-GE~~v  156 (315)
T PLN02922         84 KKESVVNL--VG--SRRGVLAAAIGCLALGAA-GLVWASLV-AGNIRVILLLAAAILCGYVYQCPPFRLSYKGL-GEPLC  156 (315)
T ss_pred             cCCCCCCc--cc--CHHHHHHHHHHHHHHHHH-HHHHHHHH-ccChHHHHHHHHHHHHHHHHhcCCcccccCcc-hHHHH
Confidence            43  2344  33  999999999988888874 44443221 01466789999999999999999999999998 89999


Q ss_pred             HHHHhHHHHHHH-HHHhC----------CCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHH
Q 017282          231 GASYISLPWWAG-QALFG----------TLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWI  299 (374)
Q Consensus       231 g~~~g~lp~~~~-~a~~g----------~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l  299 (374)
                      +++||.+++.+. +.++|          .++++.++.++++++++.+++++||+||+|+|+++||||+|+++|+|+++++
T Consensus       157 ~i~fG~l~v~g~y~~~~~~~~~~~~~~~~~~~~~~l~slp~gll~~~iL~~Nn~rD~e~D~~~Gk~TL~v~lG~~~a~~l  236 (315)
T PLN02922        157 FAAFGPLATTAFYLALASGAGGSEMAILPLTPTVLSASVLVGLTTTLILFCSHFHQIDGDRAVGKMSPLVRLGTEKGSRV  236 (315)
T ss_pred             HHHHHHHHHHHHHHHhcccccccccccccccHHHHHHHHHHHHHHHHHHHHccCcchhhHHHcCccceeeEEChHHHHHH
Confidence            999998877654 46666          3567788899999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHH-HhhhhHHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282          300 CVGAIDITQISVAGY-LLGAGKPYYALALLALIVPQIVFQFQYFL---KDPIKYDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       300 ~~~~~~l~~l~l~~~-~~~~~~~~~~~~l~~l~lpl~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      +..++..+++.++.. ..+..++ +...+.++.+|......+...   +++.+.....+.+++.++++|+++++-
T Consensus       237 ~~~l~~~~y~~~i~~v~~~~~p~-~~~l~~ll~lpl~~~~~~~~~~~~~~~~~l~~~~~~t~~~~~l~g~ll~~g  310 (315)
T PLN02922        237 VRWAVLLLYSLLAALGLLKALPL-PCALLCFLTLPLGKLVVDFVEKNHKDNAKIFMAKYYCVRLHALFGAALALG  310 (315)
T ss_pred             HHHHHHHHHHHHHHHHHHhhhhH-HHHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            998888887665433 3443333 222234456776655555432   235566777888999999999998764

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=100.00  E-value=1.5e-37  Score=297.99  Aligned_cols=270  Identities=27%  Similarity=0.350  Sum_probs=210.3

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcc
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIP  160 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~  160 (374)
                      ++|+|+|++||+.+...+.|+++|+..+.  .+++.      .++..++++++.++++|++|||+|+|+|++|+|+||++
T Consensus         2 ~~~~~~~l~Rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~~~~~iNd~~D~~iD~~~~~~Rpl~   75 (279)
T PRK09573          2 SIKAYFELIRPKNCIGASIGAIIGYLIASNFKIDLK------GIILAALVVFLVCAGGNVINDIYDIEIDKINKPERPIP   75 (279)
T ss_pred             CHHHHHHHHhHhHHHHHHHHHHHHHHHHccCCcchH------HHHHHHHHHHHHHHHHHHHHhhcccccccccCCCCCcC
Confidence            57999999999999999999999987542  23331      23334556778899999999999999999999999999


Q ss_pred             ccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHH
Q 017282          161 SGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWW  240 (374)
Q Consensus       161 sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~  240 (374)
                      +|++|+++++.++..+.++++.+++++       ++.++.+++++.++.+.||.   ++||++.+||+++|..+|..++.
T Consensus        76 sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Ys~---~lKr~~~~~~~~vg~~~G~~~~~  145 (279)
T PRK09573         76 SGRISLKEAKIFSITLFIVGLILSIFI-------NIYAFLIALLNSILLYLYAK---DLKKTGLIGNLIVAYLTGLSFIF  145 (279)
T ss_pred             CCccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcCCcHHHHHHHHHHHHHHHH
Confidence            999999999999999999999888775       45577888888888999994   68999988999999999988877


Q ss_pred             HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhh-h
Q 017282          241 AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLG-A  318 (374)
Q Consensus       241 ~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~-~  318 (374)
                      ++.+..+  ....++++...++|+.+++++||++|+|+|+++|+||+|+++|+|++.++...... ...++.+++..+ .
T Consensus       146 g~~~~~~--~~~~~~l~~~~f~~~~~~~~~~~~~D~~~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~  223 (279)
T PRK09573        146 GGLAVFN--VLRIIILFLCAFFSTWSREIVKDIEDIEGDLKENVITLPIKYGIKKSWYIAKILLILAIVLSPLPYFLGIF  223 (279)
T ss_pred             HHHHHcc--chHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHCCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            7665554  34455667778899999999999999999999999999999999999887765433 333445666655 4


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHh
Q 017282          319 GKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA  371 (374)
Q Consensus       319 ~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~  371 (374)
                      ++.|+ .....+..++++..++...++.++...+.++..+.+++.|++...++
T Consensus       224 ~~~y~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~m~~g~~~~~~~  275 (279)
T PRK09573        224 GIYYL-IVVIICDILFIIAMLILLKNPSIEGASKASKYLKIIMILGLIAFLIG  275 (279)
T ss_pred             HHHHH-HHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            55444 33344456666666665544444556677778888888777765443

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=100.00  E-value=6.6e-37  Score=290.29  Aligned_cols=280  Identities=19%  Similarity=0.241  Sum_probs=227.9

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh---C-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccc--cccc
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS---G-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDRE--IDAI  152 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~---g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~--~D~~  152 (374)
                      ...++.+.|++++||++++.++.|+++|.+.+   + .++|     +..++ ++++..++|..+|..|||+|++  .|.+
T Consensus         3 ~~~~~~~~wl~~~rP~Tl~aai~Pv~~G~a~A~~~~~~f~~-----~~~ll-~Li~~~~iq~~vN~~NdY~D~~KG~D~~   76 (303)
T COG1575           3 QKTSKTQLWLELARPKTLPAAIAPVIVGTALAFWYGKSFNL-----LVALL-ALIAAILLQILVNLANDYFDYKKGTDTH   76 (303)
T ss_pred             cccHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHccchHH-----HHHHH-HHHHHHHHHHHHHHHHhhhhhhcCCCCC
Confidence            34567799999999999999999999998743   2 4554     33344 4556678999999999999996  4653


Q ss_pred             ----cCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhH
Q 017282          153 ----NEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNF  228 (374)
Q Consensus       153 ----n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l  228 (374)
                          .+.++.+....++++..+.....+...+++++..+....   +|.++.+|+++++.++.||.||+|++|.|+ ||+
T Consensus        77 g~~~~~~~g~I~~~~~k~~~~l~l~l~~~~g~~llg~~~~~~s---~~~~l~lG~l~~~~g~~YTgGp~PlgY~gL-GEi  152 (303)
T COG1575          77 GPDRLKQSGLIVRQSMKPALILSLALFLLAGLALLGVILAALS---DWLVLLLGLLCIAAGILYTGGPFPLGYMGL-GEI  152 (303)
T ss_pred             CCccccccceeecccCCHHHHHHHHHHHHHHHHHHHHHHHHHh---hhHHHHHHHHHHHheeeeccCCcCcccCCH-HHH
Confidence                224667777788888888888888777777777665443   566899999999999999999999999998 899


Q ss_pred             HHHHHHhHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282          229 ALGASYISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (374)
Q Consensus       229 ~vg~~~g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~  307 (374)
                      .+|++||.+.+.+ ++.+++++++..++.++++++.+.+++..||+||+|+|+++||+|+||++|+++++.++..++..+
T Consensus       153 ~~~vffG~l~v~g~~yiqt~~~~~~~ll~slp~gil~~~Il~aNNirDie~D~~~gk~TLavrLG~~~~~~l~~~l~~~a  232 (303)
T COG1575         153 FVGVFFGPLIVLGAYYIQTGRLSWAILLPSLPVGILIANILLANNLRDIEEDIRNGKYTLAVRLGRKNARKLYAALLVVA  232 (303)
T ss_pred             HHHHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHHHHhcccccchhHHhcCCcceeeeeccHhHHHHHHHHHHHH
Confidence            9999999887765 478999999999999999999999999999999999999999999999999999999999888888


Q ss_pred             HHHHHH-HHhhhhHHHHHHHHHHHHHHHHHHHHHHHh--cCcchHHHHHHHhHHHHHHHHHHHHHH
Q 017282          308 QISVAG-YLLGAGKPYYALALLALIVPQIVFQFQYFL--KDPIKYDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       308 ~l~l~~-~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~--~~~~~~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      ++..+. ...+..+++++  +..+.+|+.++..|.+.  +.|.+....++.+.+...++++++..-
T Consensus       233 ~l~~~~~~i~~~~~~~~l--l~ll~~Pl~ir~~r~v~~~~~~~~~~p~l~~~~~~~~~~~~l~~~~  296 (303)
T COG1575         233 YLAIVIFVILGLFPVWGL--LFLLALPLAIRAARPVRQNQVPATLVPMLKNTVKANLLWNLLLAVG  296 (303)
T ss_pred             HHHHHHHHHHHhchHHHH--HHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            876544 45555554442  44578899999999774  445567778888888888888877543

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=6.7e-36  Score=287.46  Aligned_cols=257  Identities=20%  Similarity=0.258  Sum_probs=199.8

Q ss_pred             cchhHHHHHhhhCcc---chHHHHHHHHHHHHhh--CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282           80 ETNKWKIRLQLTKPV---TWPPLIWGIVCGAAAS--GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (374)
Q Consensus        80 ~~~~l~~~l~L~RP~---~~~~~~~~~~~G~~~~--g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n  153 (374)
                      ..+++++|+|++||+   ....+++|+++|...+  +. +++     . ..+..+++++++++++|++|||+|+|.|++|
T Consensus         3 ~~~~~~~~~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~~-----~-~~ll~~l~~~l~~~a~~~~Nd~~D~~iD~~~   76 (285)
T PRK12847          3 ILMKFLAYFKLMRLHKPIGILLVFFPTLFGLLLASHSLLPDI-----S-LLVLFIIGSVLMRSAGCIINDIFDRKIDKHV   76 (285)
T ss_pred             hHHHHHHHHHHHCcchHHHHHHHHHHHHHHHHHHhCccCCcH-----H-HHHHHHHHHHHHHHHHHHHHhHHHhhhccCC
Confidence            456899999988777   4567889999998754  22 232     1 2344555667899999999999999999987


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (374)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg  231 (374)
                      +  ++||+++|++|+++++.++.++.++++.+++.+       ++.++.+++++.++.+.||.    .||++.+++++.|
T Consensus        77 ~Rt~~Rpl~sG~is~~~a~~~~~~l~~~~~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~----~Kr~~~~~~~~~g  145 (285)
T PRK12847         77 ARTKNRPLASGALSVKQALILLFILLLIALVILLLL-------NKTTIYLSFIAVILIVLYPL----MKRFFYWPQLFLG  145 (285)
T ss_pred             CcccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHhccc----cccCCcccHHHHH
Confidence            6  699999999999999999999988888777655       56678888888888999983    8888888999999


Q ss_pred             HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HH
Q 017282          232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-IS  310 (374)
Q Consensus       232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~  310 (374)
                      ++++..++.++.+++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++|++++.++........+ ++
T Consensus       146 ~~~~~~~l~~~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~  225 (285)
T PRK12847        146 FTFNMGILMAFAAVQNQLDIEAILLYIGCIFWTIGYDTIYAYQDKKDDLKIGVKSTAIYFGNKTRKYILRLYIISLILWL  225 (285)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCchhHHHhccccHHHHHHHHHHHHHHHH
Confidence            99887666677788899999999999999999999999999999999999999999999999999887765444433 34


Q ss_pred             HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHH
Q 017282          311 VAGYLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQA  355 (374)
Q Consensus       311 l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~  355 (374)
                      ++++..+.++++|...+.  ..-..+.+.+.. .+|++++.+.++.
T Consensus       226 ~~~~~~~~~~~~y~~~~~--~~~~l~~~~~~~~~~~~~~~~~~f~~  269 (285)
T PRK12847        226 ILGIISSLHNIFYLAILA--AAGIFYYQYKLLDFDNPANCMYAFKA  269 (285)
T ss_pred             HHHHHhcCcHHHHHHHHH--HHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            567777777777764332  222333333322 3445555544443

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.5e-36  Score=286.59  Aligned_cols=243  Identities=28%  Similarity=0.398  Sum_probs=187.6

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCc
Q 017282           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPI  159 (374)
Q Consensus        81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl  159 (374)
                      ++++++|+|++||+.+.....++++|++.+. .+++.     . ++..+++++++++++|++|||+|+|+|++|+|+||+
T Consensus         1 ~~~l~~~~~l~R~~~~~~~~~~~~~g~~la~~~~~~~-----~-~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~r~~Rpl   74 (279)
T PRK12884          1 RTKMKAYLELLRPEHGLMAGIAVVLGAIIALGGLPLD-----E-ALLGFLTAFFASGSANALNDYFDYEVDRINRPDRPI   74 (279)
T ss_pred             ChHHHHHHHHhhhhHHHHHHHHHHHHHHHHCCCCchH-----H-HHHHHHHHHHHHHHHHHHHhhhhHhhhhccCCCCCC
Confidence            3589999999999999999999999987653 33321     1 333456677899999999999999999999999999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHH
Q 017282          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (374)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~  239 (374)
                      ++|++|+++++.++.++.+++++++..+       ++..+.+++++.+.++.||.   ++||+++++|+++|...+..+.
T Consensus        75 ~~G~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~~~~~~~~~~~~~~~  144 (279)
T PRK12884         75 PSGRISRREALLLAILLFILGLIAAYLI-------SPLAFLVVILVSVLGILYNW---KLKEYGLIGNLYVAFLTGMTFI  144 (279)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---hhccccchhHHHHHHHHHHHHH
Confidence            9999999999999999998998888776       45567777788888999995   7899998899999988876555


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH-HHHHHHhhh
Q 017282          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI-SVAGYLLGA  318 (374)
Q Consensus       240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l-~l~~~~~~~  318 (374)
                      .++.+. ++.+...++++...++|+.+.++.||++|+|+|+++|+||+|+++|+|++++++.....+..+ +.+++..+.
T Consensus       145 ~g~~~~-~~~~~~~~~l~~~~~~~~~~~~~~~~~~D~e~D~~~G~~Tl~v~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~  223 (279)
T PRK12884        145 FGGIAV-GELNEAVILLAAMAFLMTLGREIMKDIEDVEGDRLRGARTLAILYGEKIAGRIAAALFILAVLLSPLPYLFGI  223 (279)
T ss_pred             HHHHHh-CCCchHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHcCCeeechHhcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            555444 444446777788889999999999999999999999999999999999999877665444443 344455554


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHH
Q 017282          319 GKPYYALALLALIVPQIVFQFQ  340 (374)
Q Consensus       319 ~~~~~~~~l~~l~lpl~~~~~~  340 (374)
                      ..++|..........+++...+
T Consensus       224 ~~~~y~~~~~~~~~~~l~~~~~  245 (279)
T PRK12884        224 FNILYLAPVLVADLIFLYSAYS  245 (279)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHH
Confidence            3344543333333333333334

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.2e-35  Score=284.55  Aligned_cols=244  Identities=30%  Similarity=0.369  Sum_probs=187.5

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCcccc
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSG  162 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG  162 (374)
                      ++|+|+|++||+++..+..++++|+..+.....+   . ...+..+++++++++++|++|||+|+|+|++|+|+||+++|
T Consensus         3 ~~~~~~~l~Rp~~~~~~~~~~~~g~~~a~~~~~~---~-~~~~l~~l~~~l~~~~~~~~Nd~~D~~iD~~~~~~Rpl~~G   78 (276)
T PRK12882          3 TVRGYLELTRPVNAVVAGVAAFIGAFIAGGILSS---P-SLTGLAFAAVFLATGAGNAINDYFDREIDRINRPDRPIPSG   78 (276)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHhccccch---H-HHHHHHHHHHHHHHHHHHHHHHHhhhccccccCCCCCcCCC
Confidence            5899999999999999999999999865322111   1 11344556677899999999999999999999999999999


Q ss_pred             ccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHH
Q 017282          163 AISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAG  242 (374)
Q Consensus       163 ~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~  242 (374)
                      ++|+++++.++.++.++++++++.+       ++..+.+++++.++.+.||.   ++||++.+||+.+|...|..+.+++
T Consensus        79 ~is~~~a~~~~~~l~~~g~~~~~~l-------~~~~~~~~~~~~~~~~~Yt~---~lK~~~~~g~~~vg~~~g~~~~~g~  148 (276)
T PRK12882         79 AVSPRGALAFSILLFAAGVALAFLL-------PPLCLAIALFNSLLLVLYAE---TLKGTPGLGNASVAYLTGSTFLFGG  148 (276)
T ss_pred             CcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHHH---HHhcccchhHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888776       45567778888888899985   7999998899999988887666555


Q ss_pred             HHHhCC-CCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HHHHHHHh-hhh
Q 017282          243 QALFGT-LTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-ISVAGYLL-GAG  319 (374)
Q Consensus       243 ~a~~g~-~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~l~~~~~-~~~  319 (374)
                      .+ .++ .....+.+++..++|..+.+++||++|+|+|+++|+||+|+++|+|++.++......... ++.+++.. +.+
T Consensus       149 ~~-~~~~~~~~~~~l~~~~fl~~~~~~~~~~~~D~e~D~~~G~~tlpv~~G~~~t~~~~~~~~~~~~~~~~~~~~~~~~~  227 (276)
T PRK12882        149 AA-VGTEGLLALLVLFALAALATLAREIIKDVEDIEGDRAEGARTLPILIGVRKALYVAAAFLLVAVAASPLPYLLSTFG  227 (276)
T ss_pred             HH-hcccchHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHcCCccccHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            43 343 334456677788889999999999999999999999999999999999987665443333 34445433 345


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHH
Q 017282          320 KPYYALALLALIVPQIVFQFQYF  342 (374)
Q Consensus       320 ~~~~~~~l~~l~lpl~~~~~~~~  342 (374)
                      ..|+ ..........++.+++..
T Consensus       228 ~~y~-~~~~~~~~~~l~~~~~~~  249 (276)
T PRK12882        228 LWYL-VLVAPADLVMLAAAYRSL  249 (276)
T ss_pred             HHHH-HHHHHHHHHHHHHHHHHH
Confidence            4444 333334444555555544

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=100.00  E-value=1.5e-35  Score=284.57  Aligned_cols=256  Identities=23%  Similarity=0.276  Sum_probs=198.4

Q ss_pred             chhHHHHHhhhC---ccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC-
Q 017282           81 TNKWKIRLQLTK---PVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (374)
Q Consensus        81 ~~~l~~~l~L~R---P~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~-  154 (374)
                      ++++++|+|++|   |+.....++|+++|+..+  +.+++.      .++..+++.+++++++|++|||+|+|+|++|+ 
T Consensus         2 ~~~~~~y~~L~R~~kp~~~~l~~~p~~~g~~la~~~~~~~~------~~~l~~~g~~l~~~a~~~~Nd~~D~~iD~~~~R   75 (282)
T PRK12848          2 QNRLLAYARLMRLDKPIGTLLLLWPTLWALWLAADGIPDLW------VLVVFVLGVFLMRAAGCVINDYADRDFDGHVKR   75 (282)
T ss_pred             chhHHHHHHHHCccchHHHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccCCCCCC
Confidence            468999999996   667788889999998754  223321      22334455567899999999999999999876 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHH
Q 017282          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGAS  233 (374)
Q Consensus       155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~  233 (374)
                       |+||+++|++|++++..++..+.++++.+++.+       ++..+.+++++.+..+.|+    ..||++.+++++.|+.
T Consensus        76 t~~RPl~sG~is~~~a~~~~~~l~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~  144 (282)
T PRK12848         76 TKNRPLASGAVSEKEALALFVVLVLVAFLLVLTL-------NTLTIWLSVAALALAWIYP----FMKRYTHLPQVVLGAA  144 (282)
T ss_pred             CCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHHhcCcccHHHHHHH
Confidence             689999999999999999999999988877665       4556778888888889995    3788888899999999


Q ss_pred             HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHHHHH
Q 017282          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQISVA  312 (374)
Q Consensus       234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l~l~  312 (374)
                      +|..+.+++.++.|++++.++++++..++|+...++.|+++|+|+|+++|+||+|+++|++++.++... ......+++.
T Consensus       145 ~g~~~~~g~~a~~~~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~  224 (282)
T PRK12848        145 FGWGIPMAFAAVQGSVPLEAWLLFLANILWTVAYDTQYAMVDRDDDLKIGIKSTAILFGRYDKLIIGLLQLATLALLAWA  224 (282)
T ss_pred             HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHhccHhhHHHcCCccccHHhccccHHHHHHHHHHHHHHHHHH
Confidence            887666777788899999999999999999999999999999999999999999999999988876543 2333344566


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHH
Q 017282          313 GYLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQA  355 (374)
Q Consensus       313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~  355 (374)
                      ++..+.++.|+.. +....+.+.+ +.+.. .+|++++++.++.
T Consensus       225 ~~~~~~~~~y~~~-~~~~~~~~~~-~~~~~~~~~~~~~~~~F~~  266 (282)
T PRK12848        225 GWLLGLGWAYYWG-LLVAAALFVY-QQKLIRDREREACFKAFLN  266 (282)
T ss_pred             HHHhcCcHHHHHH-HHHHHHHHHH-HHHHcCCCCHHHHHHHHHh
Confidence            7777777766643 2222333333 33322 4566677776655

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=1.4e-35  Score=285.69  Aligned_cols=228  Identities=22%  Similarity=0.267  Sum_probs=187.7

Q ss_pred             cchhHHHHHhhhCccc---hHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017282           80 ETNKWKIRLQLTKPVT---WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (374)
Q Consensus        80 ~~~~l~~~l~L~RP~~---~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~  154 (374)
                      .++++++|+|++||+.   ..+.++|+++|+..+  +.+++.      .++..+++.+++++++|++|||+|+|+|++|+
T Consensus         5 ~~~~~~~y~~L~R~~kp~~~~l~~~~~~~g~~lA~~~~~~~~------~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~   78 (290)
T PRK12870          5 LEPTWLAIIRLLRWDKPAGRLILMIPALWAVFLAAHGLPPLP------LVGIIILGALATSAAGCVVNDLWDRDIDPQVE   78 (290)
T ss_pred             cchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhccCCCCC
Confidence            4568999999986555   566778999998754  333331      23334456667899999999999999998876


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (374)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~  232 (374)
                        ++||+++|++|++|+..++.++.++++.+++.+       ++.++.+++.+.++.+.||    ..||++.+++++.|+
T Consensus        79 Rt~~RPL~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~  147 (290)
T PRK12870         79 RTRFRPLASRRLSVKVGIVIAIVALLCAAGLAFFL-------NPLSFWLCVAAVPVIFLYP----LAKRVFPVPQLVLAI  147 (290)
T ss_pred             cccCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhh----hhhhccccceeeehH
Confidence              589999999999999999999999998888776       5667778888888889998    389998889999999


Q ss_pred             HHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHHHH
Q 017282          233 SYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQISV  311 (374)
Q Consensus       233 ~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l~l  311 (374)
                      .++..+..++.+++|++++..+++++..++|+.+++++++++|+|+|+++|+||+|+++|++++.++... .+....++.
T Consensus       148 ~~~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~d~~~a~~D~e~D~~~G~~slav~~G~~~~~~~~~~~~~~~~~l~~  227 (290)
T PRK12870        148 AWGFAVLISWSAVTGHLDLGTWLLWAATVFWTLGFDTVYAMSDREDDLRIGVNSSAIFFGRYAPEAIGLFFALTVGFLAI  227 (290)
T ss_pred             HHHhHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHCCCcchhHHhccccHHHHHHHHHHHHHHHHH
Confidence            9987766677788999999898899999999999999999999999999999999999999998887664 233444456


Q ss_pred             HHHHhhhhHHHHH
Q 017282          312 AGYLLGAGKPYYA  324 (374)
Q Consensus       312 ~~~~~~~~~~~~~  324 (374)
                      +++..+.+++||.
T Consensus       228 ~~~~~~~~~~y~~  240 (290)
T PRK12870        228 LGVLLELHLPFWI  240 (290)
T ss_pred             HHHHhCCcHHHHH
Confidence            7788888887774

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=100.00  E-value=2.8e-35  Score=286.22  Aligned_cols=229  Identities=22%  Similarity=0.262  Sum_probs=186.9

Q ss_pred             cchhHHHHHhhh---CccchHHHHHHHHHHHHhhCCC-----CCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccc
Q 017282           80 ETNKWKIRLQLT---KPVTWPPLIWGIVCGAAASGNF-----HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDA  151 (374)
Q Consensus        80 ~~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~g~~-----~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~  151 (374)
                      .++++++|+|++   ||++....++|+++|.+.+...     ..   ++.. ++..+++++++++++|++|||+|+|+|+
T Consensus        26 ~~~~~~~y~~L~R~~kP~~~~l~~~p~~~G~~lA~~~~~~~~~~---~~~~-~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~  101 (314)
T PRK12878         26 LPPWLRPYAQLARWDRPIGWWLLLWPCWWSAALAAGAAADLGLL---LLWH-LFLFFVGAIAMRGAGCTYNDIVDRDIDA  101 (314)
T ss_pred             cchhHHHHHHHHccccchhhHHHHHHHHHHHHHhcccccCCCCC---CHHH-HHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            457999999999   9999999999999998854221     11   2222 3344556778999999999999999999


Q ss_pred             ccC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHH
Q 017282          152 INE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFA  229 (374)
Q Consensus       152 ~n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~  229 (374)
                      +|+  ++||+++|++|+++++.++.++.++++.+.+.+       ++.++.++++++++.+.||    .+||++.++++.
T Consensus       102 ~~~Rt~~RPl~sG~is~~~a~~~~~~~~~~g~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~  170 (314)
T PRK12878        102 KVARTRSRPLPSGQVSRKQAKVFMVLQALVGLAVLLQF-------NWFAIALGIASLAIVAAYP----FMKRITWWPQFF  170 (314)
T ss_pred             CCCCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhcCCcchHH
Confidence            877  699999999999999998888888888777654       4667888888888899997    389998889998


Q ss_pred             HHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-
Q 017282          230 LGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-  308 (374)
Q Consensus       230 vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-  308 (374)
                      .|+.+++.|++++++++|++++.++++++..++|+...+.+++++|+|+|+++|+||+|+++|++++++++........ 
T Consensus       171 ~Gl~~~~~~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~  250 (314)
T PRK12878        171 LGLAFSWGALMGWAAHFGSLSLAAVLLYAGSIAWTIGYDTIYAHQDKEDDALIGVKSTARLFGDHTKTWLVLFYGLAVLL  250 (314)
T ss_pred             HHHHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHHHHHHHHHHhhhHhhHHHcCCcccchHhchhhHHHHHHHHHHHHHH
Confidence            8988877777778888999999888888899999999999999999999999999999999999999887754333332 


Q ss_pred             HHHHHHHhhhhHHHH
Q 017282          309 ISVAGYLLGAGKPYY  323 (374)
Q Consensus       309 l~l~~~~~~~~~~~~  323 (374)
                      +.+.++..+.++.|+
T Consensus       251 ~~l~~~~~~~~~~~~  265 (314)
T PRK12878        251 MGLAFWLAGVPLLAL  265 (314)
T ss_pred             HHHHHHHhcCcHHHH
Confidence            334444556655544

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=100.00  E-value=3.6e-35  Score=282.04  Aligned_cols=249  Identities=26%  Similarity=0.255  Sum_probs=191.6

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp  158 (374)
                      ++|+|+|++||+........+..|+..+  +.+++.      .++..++++.++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~L~r~~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RP   74 (282)
T TIGR01475         1 KFKDILELIKFEHTVFALPFAYAGALLAAKGLPGLK------TLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRP   74 (282)
T ss_pred             CHHHHHHHHccccHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCC
Confidence            4789999999999999877777788754  334432      23345566778999999999999999999994  8999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp  238 (374)
                      +++|++|+++++.++.++.++++.++..+       ++....++.++.++.+.|+    .+||++.++|++.|+.++..+
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~  143 (282)
T TIGR01475        75 LVSGLISKKEARTMIILSLALFLSASYFL-------NPLAFILSPLVLLVLIIYP----YTKRFTFLCHYVLGSTYGLAP  143 (282)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hHhccccccHHHHHHHHHHHH
Confidence            99999999999999887776666666655       4445667777777788998    489999999999999988777


Q ss_pred             HHHHHHHhCCCC--HHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH--HHHH
Q 017282          239 WWAGQALFGTLT--PDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS--VAGY  314 (374)
Q Consensus       239 ~~~~~a~~g~~~--~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~--l~~~  314 (374)
                      +.++.++.|+.+  ...++++++.++|+.+++++||++|+|+|+++|+||+|+++|+|++++++.....++...  +.++
T Consensus       144 ~~g~~a~~g~~~~~~~~~ll~~~~~~w~~~~~~i~~~~D~e~D~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~~  223 (282)
T TIGR01475       144 LAGWVAVIGTISFFLVAWLLGIGVGFWIAGFDLIYAIQDYEFDRKNGLHSIPARFGIKAALKIASLSHVITFILLLLVGF  223 (282)
T ss_pred             HHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCchHHHhchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            777778888888  778888899999999999999999999999999999999999999888766544443322  3344


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHH
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYD  350 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~  350 (374)
                      ..+.++.|+...+  +....++.+.+.. .+|++++.
T Consensus       224 ~~~~g~~y~~~~~--~~~~~l~~~~~~~~~~~~~~~~  258 (282)
T TIGR01475       224 YVGNGYIALLALI--LIGLILAYEHYIVDPGDQSKIQ  258 (282)
T ss_pred             HhhCcHHHHHHHH--HHHHHHHHHHHHcCCCCHHHHH
Confidence            4556776665433  2234555565543 34444443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=7.8e-35  Score=280.38  Aligned_cols=243  Identities=20%  Similarity=0.180  Sum_probs=186.3

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhh-------CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS-------GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (374)
Q Consensus        81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-------g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n  153 (374)
                      ++++|+|+|++||+.........++|+...       +.+++.      .++..++++.++++++|++|||+|+|+|++|
T Consensus         5 ~~~l~~y~~l~r~~~~~~~l~~a~~g~~la~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~DrdiD~~~   78 (291)
T PRK12874          5 TKKLKDISELVVFKHSIFSLPFIFIAMIVASKQKNDTGWFGFK------LLILGILAAVSARNFAMAFNRLVDRDIDKDN   78 (291)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhhhccCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhhhhccccCC
Confidence            457999999999999988887777776532       223331      2334455666788999999999999999999


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (374)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg  231 (374)
                      +  |+||+++|++|+++++.++..+.++++.+++.+       |+....+++..++....||    .+||++.++|++.|
T Consensus        79 ~RT~~RPl~sG~is~~~a~~~~~~~~~~~~~~~~~~-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~~g  147 (291)
T PRK12874         79 PRTANRPSVDGRISVKSMVLFIVLNALIFIGVSYFI-------NPLAFKLSFPFLIVLGGYS----YFKRFSSLAHLVLG  147 (291)
T ss_pred             CCCCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----hhcccccccHHHHH
Confidence            8  799999999999999999888887777666654       4556666666777788999    38999999999999


Q ss_pred             HHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH-
Q 017282          232 ASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS-  310 (374)
Q Consensus       232 ~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~-  310 (374)
                      +.++..|+.++.+++|++++..+++++..++|+.+++++|+++|+|+|+++|+||+|+++|++++.++......+..+. 
T Consensus       148 ~~~~~~~l~G~~av~g~~~~~~~~l~~~~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~~~~~~~~~~~~~~~~~~~  227 (291)
T PRK12874        148 LSLGLAPIAGVVAVLGEIPLWSVFLALGVMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGEKATLFISRLFHLLAVLFW  227 (291)
T ss_pred             HHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhhHhHHHHHHHHHHHHHHHH
Confidence            9988877778878889999888888899999999999999999999999999999999999999887654433333322 


Q ss_pred             -HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 017282          311 -VAGYLLGAGKPYYALALLALIVPQIVFQFQYF  342 (374)
Q Consensus       311 -l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~  342 (374)
                       ..++..+.++.++.  ...+...+++.+.+..
T Consensus       228 ~~~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~  258 (291)
T PRK12874        228 LLFVWCAHLGLFAYL--GVIVSALILLYEHYLV  258 (291)
T ss_pred             HHHHHHhcchHHHHH--HHHHHHHHHHHHHHHh
Confidence             22333333333332  2234444556665544

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=8e-35  Score=281.35  Aligned_cols=267  Identities=24%  Similarity=0.276  Sum_probs=199.3

Q ss_pred             cccchhHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC-
Q 017282           78 AQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE-  154 (374)
Q Consensus        78 ~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~-  154 (374)
                      +..++++|+|+|++||+.+....+|+.+|++.+.  .+++.      .++..+++++++++++|++|||+|+|+|++|+ 
T Consensus         4 ~~~~~~~~~y~~L~rp~~~~~~~~~~~~G~~la~~~~~~~~------~~~l~~l~~~l~~aa~~~iNd~~D~~iD~~~~R   77 (296)
T PRK04375          4 SSSRATLKDYLALTKPRVISLNLFTALGGMLLAPPGVPPLL------LLLLTLLGIALVAGAAGALNNYIDRDIDAKMER   77 (296)
T ss_pred             cchhhhHHHHHHHhHHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCc
Confidence            3456789999999999999999999999998653  23331      23345566778899999999999999999987 


Q ss_pred             -CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hheecCCCCcccccccchhhHHHHH
Q 017282          155 -PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGA  232 (374)
Q Consensus       155 -~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~-l~~~Ys~pP~~lK~~~~~g~l~vg~  232 (374)
                       |+||+++|++|++|++.++.++.++++++++++.      ++....+++++++ ..+.||.   ++||+++ +|..+|.
T Consensus        78 t~~Rpl~sG~is~~~a~~~~~~l~~~g~~l~~~l~------~~~~~~l~~~~~~~~~~~Ys~---~lKr~~~-~~~~v~~  147 (296)
T PRK04375         78 TKNRPLVTGRISPREALIFGLVLGVLGFLLLGLFV------NPLAAWLTLAGIFFYVVVYTL---WLKRRTP-QNIVIGG  147 (296)
T ss_pred             cCCCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHhcc---chhcCCc-cchHHHH
Confidence             7999999999999999999999988888876542      3334455555543 4678984   6999997 6877777


Q ss_pred             HHhHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHH-HHHHHH
Q 017282          233 SYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAI-DITQIS  310 (374)
Q Consensus       233 ~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~-~l~~l~  310 (374)
                      ..+..|++ ++.+++|++++.++++++..++|+...+..++++|+|||+++|+||+|+++|+++++++..... ....++
T Consensus       148 ~~g~~~~l~g~~a~~g~~~~~~~~l~~~~~lw~~~~~~~~~~~d~~D~~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~  227 (296)
T PRK04375        148 AAGAMPPLIGWAAVTGSLSWEALILFLIIFLWTPPHFWALAIFRKDDYAAAGIPMLPVVKGIRVTKRQILLYTVLLVAVS  227 (296)
T ss_pred             HHHHhHHHHHHHHhCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHcCCCccceeeCHHHHHHHHHHHHHHHHHHH
Confidence            77766655 5567789999989999999999999999999999999999999999999999999888655433 333334


Q ss_pred             HHHHHhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHH
Q 017282          311 VAGYLLG-AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFL  361 (374)
Q Consensus       311 l~~~~~~-~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l  361 (374)
                      ++++..+ .++.|+... ..+...+++.+.+...++.++..++.+..+..+.
T Consensus       228 ~~~~~~~~~~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~F~~s~~~~  278 (296)
T PRK04375        228 LLPVLLGMAGLLYLVVA-LLLGAWFLYYAWRLYRKDDRKWARKLFRYSINYL  278 (296)
T ss_pred             HHHHHHhccCHHHHHHH-HHHHHHHHHHHHHHhcCcCHHHHHHHHHHHHHHH
Confidence            5566655 455555422 2234445555555443333445555665665543

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=100.00  E-value=1.1e-34  Score=278.06  Aligned_cols=262  Identities=23%  Similarity=0.284  Sum_probs=196.8

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp  158 (374)
                      ++|+|+|++||++.+...+|++.|+..++  .+++.      .++..+++++++++++|++|||+|+|+|++|+  |+||
T Consensus         1 ~~~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~------~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   74 (279)
T PRK12869          1 KIKAYLKLLKPRVIWLLDLAAVAGYFLAAKHGVSWL------PLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRP   74 (279)
T ss_pred             CHHHHHHHhHHHHHHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCC
Confidence            57899999999999999999999988653  23431      23445667778899999999999999999987  7999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHH-HHHhhccchhHH-HHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLGLAGL-LDVWAGHDFPTI-FWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~-l~~~~g~~~~~~-~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~  236 (374)
                      +++|++|++++..++..+.++++.++++ +       ++.. ..+++...+..+.||.   ++||++++ |..+|...|.
T Consensus        75 l~sG~is~~~a~~~~~~~~~~~~~l~~~~l-------~~~~~~~~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~  143 (279)
T PRK12869         75 TPVGLVNRKEALAVGSALSALGTALGFLLL-------GPLTALFIALGWFFYAVVYTI---WLKPRTWL-NIVIGGFAGN  143 (279)
T ss_pred             cCCCCcCHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHhhhCc---ccccCChH-HHHHHHHHHH
Confidence            9999999999999999999999888877 4       3433 2334445567889994   69999995 7777777777


Q ss_pred             HHHHHH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH-HHHHHHH
Q 017282          237 LPWWAG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT-QISVAGY  314 (374)
Q Consensus       237 lp~~~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~-~l~l~~~  314 (374)
                      .|++++ .+++|++++..++++++.++|+.+....++++|+|||+++|+||+|+++|+++++++......+. .++...+
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~~l~~~d~edd~~~G~~tlpv~~G~~~a~~~~~~~~~~~~~~~~~~~  223 (279)
T PRK12869        144 AAALAGYASGTGSLDLEAVLLSFLIYLWTPGHIWSLALKYREDYRRAGVPMLPAVVGEKTSVRAISISNALMIPYILLLY  223 (279)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHcCCeecceeecHHHHHHHHHHHHHHHHHHHHHHH
Confidence            776654 67789999999999999999999998889999999999999999999999999887655433222 2233333


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI  362 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  362 (374)
                      ..+.++.|+.. .......+++.+.+...++.++..++.++.+..++.
T Consensus       224 ~~~~g~~y~~~-~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~s~~~l~  270 (279)
T PRK12869        224 LYYIGLIGLIL-VAILSAALMATSIRALLNPTKEEAWKMFKASSPYLA  270 (279)
T ss_pred             HhhccHHHHHH-HHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHH
Confidence            34456655543 333445566666664433334445566666666543

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=6.2e-35  Score=281.19  Aligned_cols=257  Identities=23%  Similarity=0.170  Sum_probs=191.4

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CC
Q 017282           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PY  156 (374)
Q Consensus        81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~  156 (374)
                      -+++|+|+|++||+......+++..|+..+  +..++.      .++..+++.+++++++|++|||+|+|+|++|+  ++
T Consensus         5 ~~~~~~y~~L~r~~~~~~~~~~~~~g~~lA~~~~~~~~------~l~~~~l~~~l~~~a~~~~Nd~~D~~iD~~~~RT~~   78 (291)
T PRK12886          5 LTKLKVFLEMIKFSHTLFALPFAGIGAVLAALGLPGAS------QLDWILMAMVGARTAAMGFNRLIDAEIDARNPRTAG   78 (291)
T ss_pred             HHHHHHHHHHhCccchHHHHHHHHHHHHHhccCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhccCCCCCCCCC
Confidence            367999999999999999988899998754  223321      23344556777899999999999999999998  79


Q ss_pred             CCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhH
Q 017282          157 RPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYIS  236 (374)
Q Consensus       157 Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~  236 (374)
                      ||+++|++|++|++.+...+.++++.+...+       |+..+.+++++.+..+.||    .+||++.+++++.|++++.
T Consensus        79 RPL~sG~is~~~A~~~~~~~~~~~~~l~~~~-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~~g~~~~~  147 (291)
T PRK12886         79 RAIPAGLISKGSAILFIVLSSLLMLFAAWFL-------NPLCLYLSPPALFFLLLYS----YCKRFTALAHVVLGFCLAL  147 (291)
T ss_pred             CCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHh----hhhccccccHHHHHHHHHH
Confidence            9999999999999987655544444443333       5666777777777789999    3799999999999998877


Q ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH-HHHHHH-
Q 017282          237 LPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ-ISVAGY-  314 (374)
Q Consensus       237 lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~-l~l~~~-  314 (374)
                      .|+.++.+++|++++.+++++++.++|+.+.++.++++|+|+|+++|+||+|+++|+++++++......... +++..+ 
T Consensus       148 ~~l~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~~~~~~~~~~~~~~~~~~~~~~~~  227 (291)
T PRK12886        148 APLGAWIAIRGTIELPAILLGLAVLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGVNGSLWIARVFHLLMIGFLFALGI  227 (291)
T ss_pred             HHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCchhHHHHHHHHHHHHHHHHHHHHH
Confidence            776677788899999999999999999999999999999999999999999999999999887654333322 233333 


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHh
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQAS  356 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~~  356 (374)
                      ..+.++.|+...+ .....+++ +.+.. .+|+++..++++..
T Consensus       228 ~~~~~~~y~~~~~-~~~~~~l~-~~~~~~~~~~~~~~~~~F~~  268 (291)
T PRK12886        228 SAGLGPWFLAGLA-VTGILLLY-EHWLLRGGDLTRLDAAFFNM  268 (291)
T ss_pred             HhcCcHHHHHHHH-HHHHHHHH-HHHHhCCCChhHHHHHHHHH
Confidence            3445666554332 33333443 54444 34434445554544

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=100.00  E-value=1e-34  Score=278.21  Aligned_cols=242  Identities=25%  Similarity=0.339  Sum_probs=185.2

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccc
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~s  161 (374)
                      ++|+|+|++||+++.....+.++|+..+ +..+..     ...+..++++.+.++++|++|||+|+|+|+.|+|+||+++
T Consensus         2 ~l~~~~~l~Rp~~~~~~~~~~~~G~~la~~~~~~~-----~~~~l~~~~~~~~~~a~~~~Nd~~D~~~D~~n~~~Rpl~s   76 (277)
T PRK12883          2 ELKAFIEITRPHNCILAGIVGILGSLVALGGIPPI-----KTLILIFLVVYLGCSGGNTINDYFDYEIDKINRPNRPLPR   76 (277)
T ss_pred             CHHHHHHHHhhhHHHHHHHHHHHHHHHHcCCCCcH-----HHHHHHHHHHHHHHHHHhHHHhhhhHhccccCCCCCCCCC
Confidence            5789999999999999999999998754 333211     1123344456667889999999999999999999999999


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHH
Q 017282          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWA  241 (374)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~  241 (374)
                      |++|+++++.++.++.++++.+++.+       ++..+.+++++.++++.||.   ++|+++++||+.+|..+|..|+.+
T Consensus        77 G~is~~~a~~~~~~l~~~g~~l~~~~-------~~~~~~~~~~~~~~~~~Y~~---~~k~~~~lg~~~vg~~~g~~~~~g  146 (277)
T PRK12883         77 GAMSRKAALYYSLLLFAVGLALAYLI-------NIEAFLFALGAYVLMFLYAW---KLKPLPFIGNVVVALLTGATPIYG  146 (277)
T ss_pred             CccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHhh---cccCCcchhhHHHHHHHHHHHHHH
Confidence            99999999999999988888777765       45567777788888999995   688988779999999999888766


Q ss_pred             HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH-HHHHHHHHhhhhH
Q 017282          242 GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT-QISVAGYLLGAGK  320 (374)
Q Consensus       242 ~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~-~l~l~~~~~~~~~  320 (374)
                      +.+ .+++++..++. ...+++..++++.||++|+|+|+++|+||+|+++|+++++++........ ..+.+++..+.+.
T Consensus       147 ~~a-~~~~~~~~~~~-~~~fl~~~~~~~~~~~~D~e~D~~~G~~Tlpv~~G~~~a~~~~~~~~~~~~~~~~l~~~~~~~~  224 (277)
T PRK12883        147 AIA-VGRIGLAGYLA-ICAFLVNVAREIMKDIEDIEGDKAKGAKTLPIIIGKKRAAYIGAIFGVLTVIASFLPVKAGIGL  224 (277)
T ss_pred             HHH-hccccHHHHHH-HHHHHHHHHHHHHhhhhhhccHHHcCCcCcChHhcHHHHHHHHHHHHHHHHHHHHHHHHHcccH
Confidence            544 47777765543 34677888899999999999999999999999999999988765433222 2234455555554


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHh
Q 017282          321 PYYALALLALIVPQIVFQFQYFL  343 (374)
Q Consensus       321 ~~~~~~l~~l~lpl~~~~~~~~~  343 (374)
                      .|+. . ..+..++++.+.+...
T Consensus       225 ~y~~-~-~~~~~~~l~~~~~~~~  245 (277)
T PRK12883        225 GYLP-I-IIVDAIILYAAYLVLR  245 (277)
T ss_pred             HHHH-H-HHHHHHHHHHHHHHHh
Confidence            4443 2 3356677777766543

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=100.00  E-value=5.2e-35  Score=283.63  Aligned_cols=269  Identities=17%  Similarity=0.189  Sum_probs=192.7

Q ss_pred             chhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhh----hhcccccccccccC
Q 017282           81 TNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQT----INDWYDREIDAINE  154 (374)
Q Consensus        81 ~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~----iNd~~D~~~D~~n~  154 (374)
                      .+.+++|+|++||++...+.+++..+...+  ......  +.  ..+..++...+.+.++|+    +|||+|+|+|++|+
T Consensus        10 ~~~l~~~~~l~Rp~t~igt~l~~~~~~l~a~~~~~~~~--~~--~~~~~~l~~~~~~~~~nv~i~~iNd~~D~~iD~ink   85 (308)
T PRK12887         10 TSWLYALWKFSRPHTIIGTSLSVLGLYLIAIAASSNTI--AL--ANLGLLLGAWIACLCGNVYIVGLNQLTDIEIDRINK   85 (308)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhccchh--hH--HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHhcCC
Confidence            456799999999999999999998776532  111110  10  011112223334455555    99999999999999


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (374)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~  234 (374)
                      |+||+++|++|+++++....++.++++.+++.+       ++..+.+++++.++++.||.||+|+||++++++++++...
T Consensus        86 p~rPiasG~ls~~~a~~~~~~~~~lal~la~~~-------~~~~~~~~~~~~~lg~~Ys~pP~rlKr~~~~~~~~i~~~~  158 (308)
T PRK12887         86 PHLPLAAGEFSRRQGQRIVIITGILALILAALL-------GPWLLITVGISLLIGTAYSLPPIRLKRFPLLAALCIFTVR  158 (308)
T ss_pred             CCCCcCCcccCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHcCCchhhcccchhHHHHHHHHH
Confidence            999999999999999999998888888888765       4557888889999999999999999999998888776666


Q ss_pred             hHHHHHHHHH-------HhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282          235 ISLPWWAGQA-------LFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (374)
Q Consensus       235 g~lp~~~~~a-------~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~  307 (374)
                      |..+.++.+.       ..+.+++..++++++.++|+.++++.||++|+|+|++.|+||+|+++|++++.+++..++.+.
T Consensus       159 g~i~~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~l~~di~D~egD~~~Gi~Tlav~lG~~~a~~l~~~ll~~~  238 (308)
T PRK12887        159 GVIVNLGLFLHFQWLLGGSVLIPPTVWLLTLFVLVFTFAIAIFKDIPDMEGDRQYQITTFTLRLGKQAVFKLSCWVLTAC  238 (308)
T ss_pred             HHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHHHHHHHhccchhhHHHcCCcchhHHHhHHHHHHHHHHHHHHH
Confidence            6554443211       122566777888889999999999999999999999999999999999999999888877777


Q ss_pred             HHHHHHH----HhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHHHHhHHHHH
Q 017282          308 QISVAGY----LLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKYQASAQPFL  361 (374)
Q Consensus       308 ~l~l~~~----~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~~~~~~~~l  361 (374)
                      ++..+..    ..+.++.++... .++..-++++|.+.. .+|+++-..+++.-=++++
T Consensus       239 y~~~i~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~y~~iw~l~~  296 (308)
T PRK12887        239 YLGMIAVGLLSLPTVNPAFLIVS-HLILLALLWWRSQRVDLQDKQAIAQFYQFIWKLFF  296 (308)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHH-HHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHHH
Confidence            6654322    222333333221 222333455555543 5666555554444444443

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=100.00  E-value=8.7e-35  Score=279.15  Aligned_cols=259  Identities=24%  Similarity=0.280  Sum_probs=192.8

Q ss_pred             HHHHhh---hCccchHHHHHHHHHHHHhhCCC-CCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282           85 KIRLQL---TKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (374)
Q Consensus        85 ~~~l~L---~RP~~~~~~~~~~~~G~~~~g~~-~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp  158 (374)
                      ++|+|+   .||+.+...++|+++|+..+... ..+  ++ ..++.++++..++++++|++|||+|+|+|++|+  |+||
T Consensus         2 ~~y~~l~R~~kp~~~~l~~~~~~~g~~la~~~~~~~--~~-~~~~~~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RP   78 (281)
T TIGR01474         2 LPYAKLMRADKPIGTLLLLWPCLWSLLLAAQAGGIP--PL-YLLGLFTVGAILMRGAGCVINDIWDRDFDPQVERTKSRP   78 (281)
T ss_pred             hHHHHHHccccHHHHHHHHHHHHHHHHHHhcccCCC--cH-HHHHHHHHHHHHHHHHHHHHHhHhhhcccccCCcccCCC
Confidence            445555   58889999999999998754221 111  11 123334455567899999999999999999876  6999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp  238 (374)
                      +++|++|+++++.++.++.++++.+++.+       ++....++++++++.+.||    .+||++.+++++.|+.++..|
T Consensus        79 l~sG~is~~~a~~~~~~~~~~~~~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~~~~~~~~~g~~~~~~~  147 (281)
T TIGR01474        79 LASGAVSVRQAILFLLVQLLVALGVLLQL-------NPLTILLGVASLALVATYP----FMKRITYWPQLVLGLAFGWGA  147 (281)
T ss_pred             CCCCCcCHHHHHHHHHHHHHHHHHHHHHh-------hHHHHHHHHHHHHHHHHhc----hhcccccccHHHHHHHHHHHH
Confidence            99999999999999999888888877664       5667888888888899998    389999999999999988877


Q ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhh
Q 017282          239 WWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLG  317 (374)
Q Consensus       239 ~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~  317 (374)
                      ++++.+++|++++..+++++..++|+.+.+++|+++|+|+|+++|+||+|+++|++++++....... +..+.+.++..+
T Consensus       148 ~~g~~a~~g~~~~~~~ll~~~~~lw~~~~~~~~a~~D~e~D~~~G~~tlpv~~G~~~~~~~~~~~~~~~~~~~~~~~~~~  227 (281)
T TIGR01474       148 LMGWAAVTGDLSTAAWVLYLANILWTLGYDTIYAMQDKEDDIKIGVKSTALRFGDNTKPWLGGLYALMILLLALAGLIAG  227 (281)
T ss_pred             HHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHhhHHhHHHcCCCcccHHhhhhhHHHHHHHHHHHHHHHHHHHHHhC
Confidence            7787888999998888788889999999999999999999999999999999999987665444332 333344555566


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHH
Q 017282          318 AGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQP  359 (374)
Q Consensus       318 ~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~  359 (374)
                      .++.|+.. +......+.+...+...+|++++. ++++.+..
T Consensus       228 ~~~~y~~~-~~~~~~~~~~~~~~~~~~~~~~~~-~~F~~~~~  267 (281)
T TIGR01474       228 LGPVYYLG-LAAAALLLIRQIATLDIRDPENCL-KLFKANNY  267 (281)
T ss_pred             CcHHHHHH-HHHHHHHHHHHHHHhCCCCHHHHH-HHHHHhhH
Confidence            77766643 323333344443333233444444 44444444

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.7e-34  Score=275.94  Aligned_cols=269  Identities=16%  Similarity=0.192  Sum_probs=202.4

Q ss_pred             HHHHHhhhCccchHHHHHHHHHHHHhhCC-CCCchhhHHHHHHHHHHHHHHHHHHH----hhhhcccccccccccCCCCC
Q 017282           84 WKIRLQLTKPVTWPPLIWGIVCGAAASGN-FHWNLEDVAKSIVCMIMSGPCLTGYT----QTINDWYDREIDAINEPYRP  158 (374)
Q Consensus        84 l~~~l~L~RP~~~~~~~~~~~~G~~~~g~-~~~~~~~~~~~ll~l~~ag~l~~~a~----~~iNd~~D~~~D~~n~~~Rp  158 (374)
                      +|.+++++||++|+...+|+.+|+..++. ++|.      .+++.    .++|...    |.+|||+|+|.|+.|++++.
T Consensus         1 ~~~~~~~~rP~~wi~~a~pf~~g~~la~~~~~~~------~l~~~----l~~~~~~n~am~~~Ndy~D~~~d~dn~r~~g   70 (282)
T PRK13105          1 IRQLLLSSRPISWINTAYPFAAAYLLAGGEIDWL------FVVGT----VFFLIPYNLAMYGINDVFDYESDLRNPRKGG   70 (282)
T ss_pred             ChhHHHhcccHHHhccHHHHHHHHHHHCCCCChH------HHHHH----HHHHHHHHHHHHhhhhhhhhhcCCCCcccCC
Confidence            36899999999999999999999987643 3331      11111    2334444    45599999999999985543


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHH-HHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLG-LAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~-l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l  237 (374)
                      . .|.++++|+....+.+..++.+ +++.+...   .++.++.++.++++.++.||.||+|+||+++.+++..++.+...
T Consensus        71 ~-~g~i~~~~~~~~~~~~~~~~~~~~~l~l~~~---~~~~~~~l~~~ai~~~~~YS~~p~rlk~~gl~d~~t~~~~f~~~  146 (282)
T PRK13105         71 V-EGAVLDRAMHRTTLWASVVTTVPFLVVLLAV---GSWASGLVLAVSVFAVVAYSAPGLRFKERPFLDSLTSSTHFVSP  146 (282)
T ss_pred             C-CCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hhHHHHHHHHHHHHHHHHhcCCCccccccchHHHHHHHHHHHHH
Confidence            3 4889999997766666655555 44443321   15668889999999999999999999999997665554444333


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHHHhh
Q 017282          238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGYLLG  317 (374)
Q Consensus       238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~~~~  317 (374)
                      ...+.+...+.+++..++.+..+++|+.+++++||+||+|+||+.|+||+|+++|+|++.+++..++.+++++++  ..+
T Consensus       147 ~v~G~~~~~~~~~~~~~l~~~~~~~~~~a~~ii~~irDie~Dr~~G~~Tlpv~lG~~~a~~~~~~l~~~a~~~~~--~~~  224 (282)
T PRK13105        147 ALYGLVLAGAPFTAALWAVLAAFFLWGMASHAFGAVQDVVADREAGIASIATVLGARRTVRLAVGLYAAAAVLML--ALP  224 (282)
T ss_pred             HHHHHHHhhccccHHHHHHHHHHHHHHHHHHHHHhCcchHhHHHcCCccchHHhcHHHHHHHHHHHHHHHHHHHH--HHH
Confidence            333444446667777888888999999999999999999999999999999999999999999888777766554  222


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHh---cCcchHHHHHHHhHHHHHHHHHHHHHHhh
Q 017282          318 AGKPYYALALLALIVPQIVFQFQYFL---KDPIKYDVKYQASAQPFLILGLLVTALAT  372 (374)
Q Consensus       318 ~~~~~~~~~l~~l~lpl~~~~~~~~~---~~~~~~~~~~~~~~~~~l~~gll~~~~~~  372 (374)
                      ...  +.  +.++.+|......+...   ++|++.+..++.+++..+++|++++++++
T Consensus       225 ~~~--~~--l~ll~~p~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~l~~~~~~  278 (282)
T PRK13105        225 WPG--WL--AAVLALPYVVNTARFWSVTDADCERANRGWRRFLWLNYVSGFLVTMLLI  278 (282)
T ss_pred             hHH--HH--HHHHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            222  22  34466788777777544   67889999999999999999999998764

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-34  Score=277.95  Aligned_cols=252  Identities=23%  Similarity=0.220  Sum_probs=192.0

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHh-----hCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAA-----SGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~-----~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~  155 (374)
                      ++|+|+|+.||+....+..-...|+..     .+.+++.      .++..+++.+++++++|++|||+|+|+|++|+  |
T Consensus         1 ~~~~~~~l~r~~~~~~a~~~~~~~~~~~~~~~~~~~~~~------~~~l~~l~~~l~~~a~~~~Nd~~Dr~iD~~~~RT~   74 (284)
T PRK12888          1 RVRAFLRLVAIEHSVFALPFAYIAALTAMFASDGSVHWA------DLLLVTVAMVGARTFAMAANRIIDREIDARNPRTA   74 (284)
T ss_pred             CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhCCCCCCCCCC
Confidence            478999999999988755544444432     2444442      23344556778899999999999999999998  7


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (374)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g  235 (374)
                      +||+++|++|++|++.++..+..+++.+++.+       |+.++.++.++.+..+.|+    ..||+++++|++.|++++
T Consensus        75 ~RPL~sG~is~~~a~~~~~~~~~~~l~l~~~l-------~~~~~~l~~~~~~~~~~Y~----~~Kr~t~~~~~~lg~~~~  143 (284)
T PRK12888         75 GRELVTGAVSVRTAWTGALVALAVFLGAAALL-------NPLCLALAPLAVAPLVVYP----YAKRFTNFPHAILGLAQA  143 (284)
T ss_pred             CCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HhhcccchhhHHHHHHHH
Confidence            99999999999999998887776666666554       5556777777777778997    489999999999999988


Q ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHH--HHHH
Q 017282          236 SLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI--SVAG  313 (374)
Q Consensus       236 ~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l--~l~~  313 (374)
                      ..|+.++.+++|++++..++++++.++|+.+++++|+++|+|+|+++|+||+|+++|+|++.++......+..+  ...+
T Consensus       144 ~~~l~g~~a~~g~~~~~~~ll~~~~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~~~a~~~~~~~~~~~~~ll~~~~  223 (284)
T PRK12888        144 VGPVGAWIAVTGTWSWPAVLLGLAVGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGVRAALWASRVAHVVTFALFVWFG  223 (284)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCchhHHHHHHHHHHHHHHHHHHHH
Confidence            88887888889999999999999999999999999999999999999999999999999998866554333332  2344


Q ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHH-hcCcchHHHHH
Q 017282          314 YLLGAGKPYYALALLALIVPQIVFQFQYF-LKDPIKYDVKY  353 (374)
Q Consensus       314 ~~~~~~~~~~~~~l~~l~lpl~~~~~~~~-~~~~~~~~~~~  353 (374)
                      +..+.++.||...+  +....+++|.+.. .+|+++++..+
T Consensus       224 ~~~~~~~~y~~~~~--~~~~~l~~~~~~~~~~~~~~~~~~f  262 (284)
T PRK12888        224 LAVGFGALWWIGLA--ITAGAFAYEHAIVSPTDLSRVNRAF  262 (284)
T ss_pred             HHhCCcHHHHHHHH--HHHHHHHHHHHHcCccCHHHHHHHH
Confidence            55667777775432  3344445554433 45556665443

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=1.3e-34  Score=277.39  Aligned_cols=252  Identities=17%  Similarity=0.096  Sum_probs=191.0

Q ss_pred             hHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282           83 KWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (374)
Q Consensus        83 ~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp  158 (374)
                      ++|+|+|++||+.....+..+..|+..+.  ..++.      .++..+++++++++++|++||++|+|+|++|+  |+||
T Consensus         2 ~~~~~~el~k~~~t~~al~~a~~g~~lA~~~~~~~~------~l~l~~~~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RP   75 (286)
T PRK12895          2 NFRDIVDYIKLEHTVFDLPFILAGYVIAAGHYIHPI------KILLILIAAVSARTSAMSINRIEGLRYDMINPRKKDWA   75 (286)
T ss_pred             cHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHHhcccCCCCcCCCCC
Confidence            57899999999999999999999987542  23321      12334456677899999999999999999996  7999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp  238 (374)
                      +++|++|++|++.+...+.++++.+.+.+       |+.++.++.....+...|+    .+||+++++|+++|+.+|..|
T Consensus        76 LpsG~is~~~A~~~~~~~~~~~~~~~~~l-------n~l~~~l~~~~~~l~~~yp----~~KR~t~~~~~~lG~~~g~~~  144 (286)
T PRK12895         76 LVSGRIKMREAIAFTIIFIAIFEICTFLL-------NRLVFILSPIVIFLFIIDP----FLKRYTAWRHIYMGSIIGLGV  144 (286)
T ss_pred             CCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----HHHhCccccHHHHHHHHHhHH
Confidence            99999999999999999988888777666       5667777777766667776    499999999999999999777


Q ss_pred             HHHHHHHhCCCCH--HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH--HHHHHH
Q 017282          239 WWAGQALFGTLTP--DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ--ISVAGY  314 (374)
Q Consensus       239 ~~~~~a~~g~~~~--~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~--l~l~~~  314 (374)
                      +.++.++.|++++  ..+++++..++|+.++++++++||+|+|++.|+||+|+++|++++.++......++.  +.+.++
T Consensus       145 l~g~~Av~g~~~~~~~~~~l~~~~~~W~~g~D~iYa~qD~e~D~~~Gv~S~a~~fG~~~~~~i~~~~~~~~~~~~~~~g~  224 (286)
T PRK12895        145 LAGYLAVIPAFPYNLLIYIIFISSSLWIAGFDIIYVIPDIEYDKINGLKTIMNTYGIKNGLYISDIFHISSLILFWISGI  224 (286)
T ss_pred             HHHHHHHcCCCCchHHHHHHHHHHHHHHHHHHHHHHhcchhhHHHcCCCchHHHHCCccHHHHHHHHHHHHHHHHHHHHH
Confidence            7777788888764  345678889999999999999999999999999999999999998876644433332  233444


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHH
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQY-FLKDPIKYDVKYQ  354 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~-~~~~~~~~~~~~~  354 (374)
                      ..+ +++||...+  +..-++..|.+. ..+|+.+|+...+
T Consensus       225 ~~~-~~~y~~~~~--~~~~~l~~q~~~~~~~~~~~~~~~~F  262 (286)
T PRK12895        225 YIR-TLWYLAALI--IIYTLVIYQHLIIDPRNPINKRMSFF  262 (286)
T ss_pred             HHh-hHHHHHHHH--HHHHHHHHHHHHhcCCCHHHHHHHHH
Confidence            443 555554322  222233333332 2466777755433

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=100.00  E-value=3.7e-34  Score=277.27  Aligned_cols=270  Identities=20%  Similarity=0.149  Sum_probs=203.0

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--  154 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--  154 (374)
                      ..++++|+|++++||+.+....+++++|++.+  +.+++.      .++..++++++.++++|++|||+|+|+|++|+  
T Consensus         8 ~~~~~l~~~~~L~RP~~~~~~~~~~~~G~~la~~~~~~~~------~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt   81 (306)
T PRK13362          8 LWEASLKDYIQVTKPGIIFGNVISVAGGFFLASKGHVDPV------LMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRT   81 (306)
T ss_pred             hHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHccCCCCHH------HHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCC
Confidence            34457899999999999999999999999764  333431      13334456677899999999999999999876  


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHH-hheecCCCCcccccccchhhHHHHHH
Q 017282          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSL-LSYIYSAPPLKLKQNGWIGNFALGAS  233 (374)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~-l~~~Ys~pP~~lK~~~~~g~l~vg~~  233 (374)
                      ++||+++|++|+++++.++..+.++++.++..+.      |+....++.++.+ ..+.||.   ++||++++++++.|+.
T Consensus        82 ~~RPlpsG~is~~~A~~~~~~l~~~g~~ll~~~~------n~~~~~l~~~~~~~~~~~Yt~---~lKr~t~~~~~vgg~~  152 (306)
T PRK13362         82 RNRVTVTGEISLGEALGFGLALGVAGFGLLAAFT------NPLAALFAAFGYVVYVGVYSL---YLKRNSVYGTLVGSLS  152 (306)
T ss_pred             CCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHhH---HHhccCcHhHHHHHHH
Confidence            6999999999999999999999888887665432      4444545545443 4679983   6999999887766655


Q ss_pred             HhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHH-HHHHHHHHHHH
Q 017282          234 YISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICV-GAIDITQISVA  312 (374)
Q Consensus       234 ~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~-~~~~l~~l~l~  312 (374)
                      .+..|+.++.++.|++++..++++..+++|+.......+++|+|||+++|+||+|+++|++++++... +......++++
T Consensus       153 ga~p~l~G~~a~~g~~~~~~~~l~~~~~~W~~~h~~~~ai~~~~Dy~~aG~~~lpv~~G~~~t~~~~~~~~~~~~~~s~l  232 (306)
T PRK13362        153 GAMPPVVGYCAVTGQFDAGALILLLMFSLWQMPHSYAIAIFRFNDYAAAGIPVLPVARGIAKTKLHIVLYILVFALVTAL  232 (306)
T ss_pred             HHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHCCCeeeceecChHHHHHHHHHHHHHHHHHHHH
Confidence            54444556678889999999999999999999999999999999999999999999999998877443 34444455667


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhc--CcchHHHHHHHhHHHHHHH
Q 017282          313 GYLLGAGKPYYALALLALIVPQIVFQFQYFLK--DPIKYDVKYQASAQPFLIL  363 (374)
Q Consensus       313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~  363 (374)
                      ++..|...++|......+.+.+++..++...+  ++++..++++..+..++..
T Consensus       233 ~~~~g~~g~~y~~~~~~~~~~~l~~a~~~~~~~~~~~~~a~~~f~~S~~yl~~  285 (306)
T PRK13362        233 LPLAGYTGIGYLAVAAATSLWWLAMALKGYRHAVDDTVWARQLFGFSILTITA  285 (306)
T ss_pred             HHHHccccHHHHHHHHHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHHHH
Confidence            77766544455544434445566666654432  3334577888888887664

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=2.3e-34  Score=277.68  Aligned_cols=253  Identities=19%  Similarity=0.143  Sum_probs=188.0

Q ss_pred             cchhHHHHHhhhCccchHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (374)
Q Consensus        80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~  155 (374)
                      .++++++|+|++||+.......++.+|+..+  +.+++.      .++..+++.+++++++|++|||+|+|+|++|+  |
T Consensus        11 ~~~~l~~yl~L~R~~~~~~~l~~~~~g~~la~~~~~~~~------~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~   84 (300)
T PRK13106         11 TRSKFYIILRFLRIEQTFFSLPMAYLGAFVAIKGIPPIS------TLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTK   84 (300)
T ss_pred             hHHHHHHHHHHHccccHHHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccC
Confidence            4568999999999999999988899998754  333331      23334556678899999999999999999996  7


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHh
Q 017282          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYI  235 (374)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g  235 (374)
                      +||+++|++|++|++.+...+.+.++++++.+       |+....++.++.+..+.||    .+||+++++|+++|++++
T Consensus        85 ~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l-------n~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg~~~~  153 (300)
T PRK13106         85 NRPLVTGAIKISEAKALITAGLILFFASAYLV-------NRWALLLSPIVALIAMSYP----YMKRYTAFANYHLASIQG  153 (300)
T ss_pred             CCCCCCCCcCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHhcCCcchHHHHHHHHH
Confidence            99999999999999988766655555555544       5556677777777778898    389999999999999999


Q ss_pred             HHHHHHHHHHhCCC--------CHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHH
Q 017282          236 SLPWWAGQALFGTL--------TPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDIT  307 (374)
Q Consensus       236 ~lp~~~~~a~~g~~--------~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~  307 (374)
                      ..++.++.++.|..        +..++++.+..++|+.+++++|+++|+|+|++.|+||+|+++| ++++++...+....
T Consensus       154 ~~~~~G~~a~~g~~~~~~~~~l~~~~~~l~~~~~lw~~~~d~iya~~D~e~D~~~Gi~Slpv~~G-~~a~~~~~~~~~~~  232 (300)
T PRK13106        154 LAVFSGAVAVLGLYANSLIQVLLRVPWLFVIGTILWAAGFDLYNHIPDAEFDREMGLHSFAVVLG-KWALTFAGLNQLFS  232 (300)
T ss_pred             HHHHHHHHHHcCCcccchhhhhhHHHHHHHHHHHHHHHHHHHHHHccchhhHHHCCCCccHHHHh-hhHHHHHHHHHHHH
Confidence            88877777777743        2344556667889999999999999999999999999999999 77877766544333


Q ss_pred             HH--HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHH
Q 017282          308 QI--SVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKY  353 (374)
Q Consensus       308 ~l--~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~  353 (374)
                      ..  ...++..++++.||..++  ....++..+.+...++ ++|+..+
T Consensus       233 v~l~~~~~~~~~lg~~y~~~~~--~~~~~l~~~~~~~~~~-~~~~~~F  277 (300)
T PRK13106        233 VVLDLLGDLYYGLGPIAIAATI--LHGLIMAYAYYLASKK-GDFGRAF  277 (300)
T ss_pred             HHHHHHHHHHhCCcHHHHHHHH--HHHHHHHHHHHHhCCc-hHHHHHH
Confidence            32  234456677877765432  2222333344433344 5555554

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=100.00  E-value=3.9e-34  Score=275.04  Aligned_cols=259  Identities=25%  Similarity=0.300  Sum_probs=199.6

Q ss_pred             chhHHHHHhhh---CccchHHHHHHHHHHHHhh---CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282           81 TNKWKIRLQLT---KPVTWPPLIWGIVCGAAAS---GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (374)
Q Consensus        81 ~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~---g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n  153 (374)
                      ++++++|+|++   ||....+..+|+..|....   +. +++.      .++..+++..++++++|++||++|+|+|++|
T Consensus         3 ~~~~~~y~~L~Rl~kp~~~~l~~~p~~~~~~l~a~~~~~~~~~------~l~l~~~g~~~~~~a~~~~Nd~~Dr~iD~~~   76 (289)
T PLN02809          3 PPSLRPYAKLARLDKPIGTWLLAWPCMWSIALAAPPGSLPDLK------MLALFGCGALLLRGAGCTINDLLDRDIDKKV   76 (289)
T ss_pred             chhHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHhccCCCCcHH------HHHHHHHHHHHHHHHHHHHHhhHHhccccCC
Confidence            46899999987   6888899999999887643   22 2321      2334555667789999999999999999998


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (374)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg  231 (374)
                      +  |+||+++|++|++|++.+..++.++++.+++.+       |+..+.+++++.++.+.||    .+||++++++++.|
T Consensus        77 ~RT~~RPL~sG~is~~~A~~~~~~~~~~~~~~~~~l-------~~~~~~l~~~~~~~~~~Y~----~~KR~t~~~~~~lg  145 (289)
T PLN02809         77 ERTKLRPIASGALTPFQGVGFLGAQLLLGLGILLQL-------NNYSRILGASSLLLVFTYP----LMKRFTFWPQAFLG  145 (289)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHh----HHHhcCcchHHHHH
Confidence            6  699999999999999999988888888887765       4557788888888889998    39999999999999


Q ss_pred             HHHhHHHHHHHHHHhCCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHH
Q 017282          232 ASYISLPWWAGQALFGTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQI  309 (374)
Q Consensus       232 ~~~g~lp~~~~~a~~g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l  309 (374)
                      +.++..|++++.++.|++++..++ +....++|+.+.+++++++|+|+|+++|+||+|+++|++.+.++...... ...+
T Consensus       146 ~~~~~~~l~g~~av~g~~~~~~~~~l~~~~~~W~~~~d~~ya~~D~e~D~~~Gi~sl~v~~G~~~~~~i~~~~~~~~~~l  225 (289)
T PLN02809        146 LTFNWGALLGWAAVKGSLDPAVVLPLYASGVCWTLVYDTIYAHQDKEDDLKVGVKSTALRFGDDTKLWLTGFGAASIGGL  225 (289)
T ss_pred             HHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHhchhhHHhCCCcccchhhcHHHHHHHHHHHHHHHHHH
Confidence            998888888888888988876664 77778889999999999999999999999999999999977776653222 2233


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHH-HhcCcchHHHHHHHhHH
Q 017282          310 SVAGYLLGAGKPYYALALLALIVPQIVFQFQY-FLKDPIKYDVKYQASAQ  358 (374)
Q Consensus       310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~-~~~~~~~~~~~~~~~~~  358 (374)
                      ...++..+.+++||...+ .... .+.++.+. ..+|+++|++.++....
T Consensus       226 ~~~g~~~~~~~~~~~~~~-~~~~-~l~~~~~~v~~~~~~~~~~~F~~n~~  273 (289)
T PLN02809        226 ALSGYNAGLGWPYYAGLA-AAAG-HLAWQIQTVDLSSRADCNRKFVSNKW  273 (289)
T ss_pred             HHHHHHhcCcHHHHHHHH-HHHH-HHHHHHHHcCCCCHHHHHHHHHhCCH
Confidence            345666778887775432 2222 33444443 36777778777554443

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=100.00  E-value=1.4e-33  Score=270.69  Aligned_cols=261  Identities=21%  Similarity=0.198  Sum_probs=192.8

Q ss_pred             HHHHhhhCccchHHHHHHHHHHHHhhCC---CCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCc
Q 017282           85 KIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPI  159 (374)
Q Consensus        85 ~~~l~L~RP~~~~~~~~~~~~G~~~~g~---~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rpl  159 (374)
                      |+|+|++||+++....+|+.+|++.++.   +++     . .++.++++++++++++|++|||+|+|.|++|+  |+||+
T Consensus         1 ~~~~~l~rp~~~~~~~~~~~~g~~la~~~~~~~~-----~-~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl   74 (280)
T TIGR01473         1 KDYLQLTKPRIISLLLITAFAGMWLAPGGALVNP-----P-LLLLTLLGTTLAAASANAFNMYIDRDIDKKMKRTRNRPL   74 (280)
T ss_pred             CchHHHccHHHHHHHHHHHHHHHHHhCCCCCCCH-----H-HHHHHHHHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCC
Confidence            4799999999999999999999986532   233     1 23445567778999999999999999999987  79999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHHH
Q 017282          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP  238 (374)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp  238 (374)
                      ++|++|++++..++..+.++++.+..+..      ++....++++++++ .+.||.   ++||++++ +..+|...|.+|
T Consensus        75 ~sG~is~~~a~~~~~~~~~~g~~il~~~~------~~~~~~l~~~~~~~~~~~Yt~---~lKr~~~~-~~~v~~~~g~~~  144 (280)
T TIGR01473        75 VTGRISPREALAFGLLLGVLGVAILAAFV------NPLAALLGLFGIFFYVIVYTI---WLKRRTPQ-NTVIGGFAGAVP  144 (280)
T ss_pred             CCCCcCHHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHhhcCh---hhccCCch-hHHHHHHHHHHH
Confidence            99999999999999999888887544321      45566777777755 889995   58999986 666666777777


Q ss_pred             HHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHH-HHHHHHHHHHHHh
Q 017282          239 WWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGA-IDITQISVAGYLL  316 (374)
Q Consensus       239 ~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~-~~l~~l~l~~~~~  316 (374)
                      +++ +.+++|++++..++++++.++|+........++|+|||+++|+||+|+++|+|++.++.... +.+..++.+++..
T Consensus       145 ~l~g~~a~~g~~~~~~~~l~~~~~~w~~~~~~~~a~~~~~dd~~~G~~tl~v~~G~~~a~~~~~~~~~~~~~~~~~~~~~  224 (280)
T TIGR01473       145 PLIGWAAVTGSISLGAWLLFAIIFLWQPPHFWALALKYKDDYRAAGIPMLPVVKGERITKRQIALYTAALLPVSLLLAFL  224 (280)
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHCCCccCCcccCHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            655 46778999999988899999999988778889999999999999999999999888765543 2333334444433


Q ss_pred             -hhhHHHHHHHHHHHHHHHHHHHHHHHhcC-cchHHHHHHHhHHHHHH
Q 017282          317 -GAGKPYYALALLALIVPQIVFQFQYFLKD-PIKYDVKYQASAQPFLI  362 (374)
Q Consensus       317 -~~~~~~~~~~l~~l~lpl~~~~~~~~~~~-~~~~~~~~~~~~~~~l~  362 (374)
                       +.++.|+... ..+...+++.+.+...++ .++...+.++.+..++.
T Consensus       225 ~~~~~~y~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~f~~s~~~~~  271 (280)
T TIGR01473       225 GGTGWLYLIVA-TLLGALFLYLAFKFYRDPTDRKKARKLFKFSLIYLA  271 (280)
T ss_pred             hcccHHHHHHH-HHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHH
Confidence             3466555332 233444555565544333 23345566666666544

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3.2e-33  Score=268.15  Aligned_cols=234  Identities=20%  Similarity=0.168  Sum_probs=186.3

Q ss_pred             cchhHHHHHhh---hCccchHHHHHHHHHHHHhhCC--CCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC
Q 017282           80 ETNKWKIRLQL---TKPVTWPPLIWGIVCGAAASGN--FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE  154 (374)
Q Consensus        80 ~~~~l~~~l~L---~RP~~~~~~~~~~~~G~~~~g~--~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~  154 (374)
                      .++++++|+|+   .||....+.++|++.|...+..  .++     . .++..++++.++.+++|++||+.|+|+|++|+
T Consensus         3 ~~~~~~~y~~L~R~~Kp~~~~ll~~p~~~g~~la~~~~~~~-----~-~~~~~~~g~~l~~~a~~~~Nd~~D~~iD~~~~   76 (294)
T PRK12873          3 RSIKLSPWFELLRWNKPTGRLILLIPAGWSLWLTPSAPPSL-----L-LLLLIILGGLAVSGAGCIANDLWDRRIDRKVE   76 (294)
T ss_pred             chHhHHHHHHHhCccccchHHHHHHHHHHHHHHccCCCCCH-----H-HHHHHHHHHHHHHHHHHHHHHHHHHhhccCCC
Confidence            45689999999   5677778899999999775422  232     1 23445566777899999999999999999987


Q ss_pred             --CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHH
Q 017282          155 --PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGA  232 (374)
Q Consensus       155 --~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~  232 (374)
                        ++||+++|++|+++++.++.++.++++.+.+.+...   .|+..+.+++++++....||    .+||++.+++++.|+
T Consensus        77 RT~~RPl~sG~is~~~A~~~~~~~~~~~~~~~~~l~~~---~n~l~~~l~~~~~~~~~~Y~----~~KR~t~~~~~vlg~  149 (294)
T PRK12873         77 RTKNRPLARGKISLKTAYSLLIVLLLLSLFVVLSLPQP---SRNLCLSLAFLALPPILIYP----SAKRWFAYPQAILAL  149 (294)
T ss_pred             cCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHhcc---hhHHHHHHHHHHHHHHHHHH----HHHhccccchHHHHH
Confidence              699999999999999999999988888877665311   15667788888888889999    489999999999999


Q ss_pred             HHhHHHHHHHHHHhCCCCHH--HHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHH
Q 017282          233 SYISLPWWAGQALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQI  309 (374)
Q Consensus       233 ~~g~lp~~~~~a~~g~~~~~--~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l  309 (374)
                      ..+..|+++|.+++|++++.  .+++++..++|+.+.+++++++|+|+|+++|+||+|+++|++..+..... .+.+..+
T Consensus       150 ~~a~~~l~gw~Av~g~~~~~~~~l~l~~~~~~W~~~~d~iyA~qD~edD~~~Gv~slpv~~G~~~~~~~~~~~~~~~~ll  229 (294)
T PRK12873        150 CWGFAVLIPWAAAEGSLNGGWPLLFCWLATLLWTFGFDTVYAMADRRDDAKIGLNSSALSLGSNALKTVQICYFLTSIFL  229 (294)
T ss_pred             HHHhHHHHHHHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHhHhhHHHcCCcccchhcChhhHHHHHHHHHHHHHHH
Confidence            88877777888889998863  34455788999999999999999999999999999999998655543332 3334445


Q ss_pred             HHHHHHhhhhHHHHHHH
Q 017282          310 SVAGYLLGAGKPYYALA  326 (374)
Q Consensus       310 ~l~~~~~~~~~~~~~~~  326 (374)
                      ..+++..++++.||...
T Consensus       230 ~~~g~~~~l~~~y~~~~  246 (294)
T PRK12873        230 ALAAFIAQVGFIFWPFW  246 (294)
T ss_pred             HHHHHHhCCcHHHHHHH
Confidence            66788888888877543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=100.00  E-value=1.3e-32  Score=265.22  Aligned_cols=224  Identities=29%  Similarity=0.357  Sum_probs=187.5

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCC--CCCc
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEP--YRPI  159 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~--~Rpl  159 (374)
                      ..++.++++.||..+.+..+|.++|..... .+++  . ....+..++++++.++++|++||++|+|+|++|+|  +||+
T Consensus        11 ~~~~~l~r~~r~i~~l~~~~~~~~~~~~~~-~~~~--~-~~~~~l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl   86 (289)
T COG0382          11 KALLKLLRLDRPIFNLLLLLPALLGLLLAA-SGLP--S-LKLLLLAFLAFFLARSAGYVINDLADREIDRINPRTKNRPL   86 (289)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHH-cCCc--h-HHHHHHHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCC
Confidence            456777888899999999999999987543 1221  1 12344555666778999999999999999999997  9999


Q ss_pred             cccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHH
Q 017282          160 PSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPW  239 (374)
Q Consensus       160 ~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~  239 (374)
                      ++|++|+++++.+..++.++++++++.+       |+..+.+++.+.++.+.|   | ++||.++++++.+|..++..+.
T Consensus        87 ~sG~vS~~~a~~~~~~~~~~~~~~a~~l-------~~~~~~l~~~~~~l~~~Y---~-~~Kr~~~~~~~~lg~~~~~~~~  155 (289)
T COG0382          87 PSGRVSVKEALLLAILLLLLGLALALLL-------NPLAFLLSLAALVLALAY---P-FLKRFTFLPQLVLGLAFGLGAL  155 (289)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHH---H-HhhcCCchHHHHHHHHHHHHHH
Confidence            9999999999999999999999999887       455678888888999999   3 5999999999999999998888


Q ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHH-HHHHHHHHHHhhh
Q 017282          240 WAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAID-ITQISVAGYLLGA  318 (374)
Q Consensus       240 ~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~-l~~l~l~~~~~~~  318 (374)
                      +++.+..|+..+..+++.+..++|+.+++++++++|+|+|++.|+||+|+.+|++++..+...... ...+..+++..+.
T Consensus       156 ~g~~a~~~~~~~~~~~l~~~~~l~~~~~~~i~~~~D~e~D~~~G~~s~~~~~G~~~a~~l~~~~~~~~~~~~~~~~~~~~  235 (289)
T COG0382         156 AGAAAVGGSLPLLAWLLLLAAILWTLGYDIIYAIQDIEGDRKAGLKSLPVLFGIKKALALALLLLLASALLVLLGLLAGL  235 (289)
T ss_pred             HHHHHHhCccchHHHHHHHHHHHHHHHHHHHHhccCccchHhcCCcchHHHhCchhHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            887788888888888898999999999999999999999999999999999999999998776553 2233456666666


Q ss_pred             hH
Q 017282          319 GK  320 (374)
Q Consensus       319 ~~  320 (374)
                      ..
T Consensus       236 ~~  237 (289)
T COG0382         236 LG  237 (289)
T ss_pred             ch
Confidence            54

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=5e-32  Score=261.42  Aligned_cols=266  Identities=18%  Similarity=0.183  Sum_probs=188.2

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh----CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc----
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS----GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN----  153 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~----g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n----  153 (374)
                      +++|+|++++||+++.....+++.|.+.+    |.+++.     . ++.+++.+.++..++|++|||+|+|.|+.|    
T Consensus         3 ~~~~~~~~l~Rp~~l~~~~~~~~~g~~lA~~~~g~~~~~-----~-~~l~~l~~~l~~~ag~~iND~~D~~~D~~~v~rt   76 (297)
T PRK12871          3 ETLKAYIDLTRAHFLPAWPLLFCSGLVLAFANYGGFSWE-----L-TIKAALIGLFGFEAGFVLNDYVDRKRDRLDVENT   76 (297)
T ss_pred             chHHHHHHHHhHHHHHHHHHHHHHHHHHHHHccCCCCHH-----H-HHHHHHHHHHHHHHHHHHhhHHHHhcCcchHhhh
Confidence            46999999999998888888887887542    445542     1 222233455556678999999999999864    


Q ss_pred             -----C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchh
Q 017282          154 -----E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIG  226 (374)
Q Consensus       154 -----~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g  226 (374)
                           +  ++||+++|++|+++++.++.++.++++.++..+....   .+..+.+++.+.++++.|+..|.. .+.+. +
T Consensus        77 m~r~~~P~~~Rpl~sG~is~~~a~~~~i~l~~i~~~l~~~l~~~~---~~~~~~l~~~~~~~~~~Y~~~kr~-~~~p~-~  151 (297)
T PRK12871         77 LTRYWRPFKERPIPSGKLSSKNAFALFILLAAVTSALILTLPYPN---SLYVFVIMLYSYGIEAFYQVKKRN-QKYPV-A  151 (297)
T ss_pred             hhccccCCCCCccCCCCcCHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHhccccc-ccccH-H
Confidence                 2  5899999999999999999999999988887765432   234567778888889999842211 11232 2


Q ss_pred             hHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHH
Q 017282          227 NFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (374)
Q Consensus       227 ~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l  306 (374)
                      ++.-++.++. +.+.+++++|+++...+++++..++|+.+++.+||++|+|||+++|+||+|+++|+++++++......+
T Consensus       152 ~l~G~~~~~~-~~~~g~~~~g~~~~~~~ll~~~~~~w~~~~~~~~a~~D~e~D~~~G~~Tlpv~~G~~~t~~~i~~~~~l  230 (297)
T PRK12871        152 QLLGRTDFTL-FPAAGYLCYGQPDMTALLYMVFFYPWTMAHLGLNDFIDLENDRARGMKSIAVLYGMKGTMYWVTGFTAL  230 (297)
T ss_pred             HHHHHHHHHH-HHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHcCCeeeeeeechHHHHHHHHHHHHH
Confidence            3333344555 444456678999988888888999999999999999999999999999999999999888755544444


Q ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHh-cCcchHHHHHHHhHHHHH
Q 017282          307 TQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFL-KDPIKYDVKYQASAQPFL  361 (374)
Q Consensus       307 ~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~-~~~~~~~~~~~~~~~~~l  361 (374)
                      ..+..+++..+.++.++.. ..+...++.+.|.+... +|++.|. +.+.+.+.|.
T Consensus       231 ~~l~~~~~~~~~g~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-~~f~~~~~~~  284 (297)
T PRK12871        231 HFLAAIFFLRELGPIALYG-FLAGFVLLAGANLYLWKEKSQDAGM-KILPLYHASL  284 (297)
T ss_pred             HHHHHHHHHHHhhHHHHHH-HHHHHHHHHHHHHHHhcCCCHHHHH-HHHHHHHHHH
Confidence            4444555566676553332 22356677777877654 4444444 4444554443

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=100.00  E-value=3e-32  Score=261.50  Aligned_cols=229  Identities=23%  Similarity=0.197  Sum_probs=176.1

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh-------CC-CCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-------GN-FHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN  153 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-------g~-~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n  153 (374)
                      +++|.|.|+.|-...+.++--...|+..+       +. ++++  ++ ..++.+.++.+++++++|++|||+|+|+|++|
T Consensus         2 ~~~~~~~~~i~~~ht~Falpfa~~~~~~a~~~~~~~~~~~~~~--~~-~~~~~~~~a~~~~Rsag~~~Nd~~DrdiD~~~   78 (300)
T PRK12876          2 MRIKYFQQLINCKYALFSALFLSASTVFALSLPEISFSLFSLG--GI-KTISLGGSAFFCARTVGIIVNQIIDCAIDKKN   78 (300)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccCCCcCCC--CH-HHHHHHHHHHHHHHHHHHHHHhHHHhcccCCC
Confidence            46899999999877665544444555422       22 2232  11 12334555667789999999999999999999


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (374)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg  231 (374)
                      +  ++||+++|++|++|++.+...+.++++++.+.+       |+.++.++.+++++.+.||    .+||++++++++.|
T Consensus        79 ~RT~~RPLpsG~is~~~A~~~~~~~~~~~~~l~~~l-------n~l~~~l~~~~~~~~~iY~----~~KR~t~~~~~vLG  147 (300)
T PRK12876         79 PRTSSRVLPAKLLSINFSMLLLTLCSFLFLSLCWLL-------NPLCFSLAVLSTLLMIIYP----YTKRVTFLCHWILG  147 (300)
T ss_pred             CCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHHH----hHhcCCchhHHHHH
Confidence            9  799999999999999998876666666666655       6778888888888889998    49999999999999


Q ss_pred             HHHhHHHHHHHHHHhCC-CCH----HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHH
Q 017282          232 ASYISLPWWAGQALFGT-LTP----DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDI  306 (374)
Q Consensus       232 ~~~g~lp~~~~~a~~g~-~~~----~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l  306 (374)
                      ++++..|.+++.++.|+ .++    ..+++++..++|..+++++++++|+|+|++.|+||+|+++|++++..+......+
T Consensus       148 l~~~~~~l~~~~Av~~~~~~~~l~~~~~lw~~~~~~~~~g~DiiYa~qD~e~D~~~Gl~Slpv~fG~~~a~~ia~~~~~l  227 (300)
T PRK12876        148 LVYYLAILMNFFAIIETPLSFSLFCMASLWGISFGMIIAANDIIYAIQDLEFDRKEGLFSIPARFGEKKAIRIASANLIA  227 (300)
T ss_pred             HHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHhhHHHcCCccchHHHCchhHHHHHHHHHHH
Confidence            99998888787777776 555    3445667778888899999999999999999999999999999887665544333


Q ss_pred             H--HHHHHHHHhhhhHHHHH
Q 017282          307 T--QISVAGYLLGAGKPYYA  324 (374)
Q Consensus       307 ~--~l~l~~~~~~~~~~~~~  324 (374)
                      .  .+.+.++..+.++++|.
T Consensus       228 ~~~~l~~~g~~~~l~~~~y~  247 (300)
T PRK12876        228 SAIAYLLIGYFVSNKKIFYL  247 (300)
T ss_pred             HHHHHHHHHHHhhccHHHHH
Confidence            3  33456677778877564

>COG0109 CyoE Polyprenyltransferase (cytochrome oxidase assembly factor) [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=6e-33  Score=262.70  Aligned_cols=267  Identities=23%  Similarity=0.230  Sum_probs=219.0

Q ss_pred             cchhHHHHHhhhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--C
Q 017282           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--P  155 (374)
Q Consensus        80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~  155 (374)
                      .++++|+|++++||+.+.+.+++.+.|+..+.  ..++      ..++...+++.+..+++|++|+|+|+|+|++++  +
T Consensus        14 ~~~~~k~yl~LtKPrvi~L~~it~~~g~~lA~~~~~~~------~l~~~~~~g~~L~a~~a~a~N~~~DrDID~~M~RT~   87 (304)
T COG0109          14 SRSTIKDYLQLTKPRVISLLLITAFAGMLLAPRGSINP------LLLLLTLLGGALGAGGAGAFNMYIDRDIDALMERTR   87 (304)
T ss_pred             hHHHHHHHHHHhCCeeeehHHHHHHHHHHHcccccccH------HHHHHHHHHHHHHHHHHHHHhhhhhhhHHHhhhhcc
Confidence            66899999999999999999999999998654  3333      134555667778888999999999999999998  6


Q ss_pred             CCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHH
Q 017282          156 YRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASY  234 (374)
Q Consensus       156 ~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~  234 (374)
                      +||+++|+++|++++.++.++.++|+.+.+++.      |+....+++++++. .++||.   ++||++.. |+++|..-
T Consensus        88 ~RP~~~G~i~p~~al~fgl~L~~~g~~~l~~~v------n~laa~l~~~gi~~Yv~vYT~---~lKR~T~~-NiviGg~a  157 (304)
T COG0109          88 KRPLVTGLISPREALAFGLVLGVAGFSLLWFLV------NLLAAVLGLFGIFFYVVVYTL---WLKRRTPQ-NIVIGGFA  157 (304)
T ss_pred             CCCCCCCccCHHHHHHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHhhhhhh---hccCCccc-ceeeeecc
Confidence            999999999999999999999999998886543      66666777776654 889996   89999995 99999999


Q ss_pred             hHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHH-HHHHHHHHHHHHHH
Q 017282          235 ISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW-ICVGAIDITQISVA  312 (374)
Q Consensus       235 g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~-l~~~~~~l~~l~l~  312 (374)
                      |.+|.+ ||.+++|++++++++++.++|+|+-..-..=.++-+||.+++|++++|++.|++.+++ +..+.+.+..+++.
T Consensus       158 Ga~PpliGwaAvtg~~~~~a~~Lf~IiF~WtPpHfwALAl~~~~DY~~AgiPMlPvv~G~~~t~~~I~~y~~~l~~~sl~  237 (304)
T COG0109         158 GAMPPLIGWAAVTGSISLGAILLFAIIFLWTPPHFWALALKYKDDYKAAGIPMLPVVKGERRTKRQILLYTLALAPVSLL  237 (304)
T ss_pred             ccccccceeeeeeCCCCchHHHHHHHHHHhccHHHHHHHHHHHHHHHHcCCCcccccccHHHHHHHHHHHHHHHHHHHHH
Confidence            998866 5578899999999999999999875444444455667777999999999999998766 55566666666666


Q ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282          313 GYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI  362 (374)
Q Consensus       313 ~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  362 (374)
                      .+..|...+.|..+...+...++++.+|.+.++.++...+++..+.+++.
T Consensus       238 ~~~~g~~g~~Y~v~a~~l~~~~l~~a~~~~~~~~~~~A~klF~~S~~yL~  287 (304)
T COG0109         238 LALLGYVGYLYLVVATLLGAWFLALAWKLYRKDDRKWARKLFKYSIIYLA  287 (304)
T ss_pred             HHHhccchhHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHH
Confidence            65677776677777777788888988888877888899999999999865

>PRK13595 ubiA prenyltransferase; Provisional

Probab=100.00  E-value=4.9e-32  Score=258.39  Aligned_cols=219  Identities=19%  Similarity=0.213  Sum_probs=170.1

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhhC-CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCC
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASG-NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYR  157 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g-~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~R  157 (374)
                      .....++.+++++||.+|+...+|+.+|+..+| .++|.+.   ...++++.+ ...+...|.+|||+|+|+|++|+|+|
T Consensus         7 ~~~~~l~~ll~~sRP~~wi~t~~~~~~G~~~~g~~~~~~~~---~~~l~~~~~-~p~n~~~~giND~fD~eiDa~Npr~~   82 (292)
T PRK13595          7 GILLPLRRLLLISRPALWVNTVGTLVTGVWLTGHLYTLDPG---VLPLLLYLT-LPFNLLIYGLNDLADRETDAASPRKG   82 (292)
T ss_pred             hhhhHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCcccchhH---HHHHHHHHH-HHHHHHHHHHHhhhhhhhhccCCCCC
Confidence            445678889999999999999999999998765 3565211   122333333 34677999999999999999999999


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (374)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l  237 (374)
                      |+++|++|+++++.+...+.+.++.++..+....   ++..+.+.+++.++++.||.||+|+|++++++++.. ..+| +
T Consensus        83 ~i~~G~is~~~~~~~~~~~~~~~~~~~l~la~~l---~~~~~~l~~v~~~l~~~YS~pPlRlK~rp~l~~l~~-~~~g-~  157 (292)
T PRK13595         83 GWQGARLSPGEVRPLLRAVLLLNAPFLLYLALLL---PPAATLLLLLYAALFVGYSLPPLRFKARPFLDGLSN-AAYA-L  157 (292)
T ss_pred             CCCcCccCHHHHHHHHHHHHHHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHHHccCccchhcCcchhHHHH-HHHH-H
Confidence            9999999999999877766666555454444332   466777888888999999999999999999988876 3444 3


Q ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH
Q 017282          238 PWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (374)
Q Consensus       238 p~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~  308 (374)
                      |+..+.++.|+......+  +..++|..+++++++++|+|+||+.|+||+|+++|+|++.+++....+++.
T Consensus       158 p~~~~~~~~g~~~~~~~l--~a~~~w~~g~dii~ai~DiegDr~~Gi~Slpv~lG~r~a~~~a~~~~~~a~  226 (292)
T PRK13595        158 PLALPALALGAPVPWPPL--LALMAWSVGKHAFDAAQDIPADRAAGTRTVATTLGVRGTALYALAWFLLAG  226 (292)
T ss_pred             HHHHHHHHcCCcchHHHH--HHHHHHHHHHHHHHhccChHhHHHcCCeechHHhCcHhHHHHHHHHHHHHH
Confidence            666666667765433332  455678899999999999999999999999999999999998876554443

>PLN02776 prenyltransferase

Probab=99.97  E-value=1.4e-29  Score=246.49  Aligned_cols=256  Identities=19%  Similarity=0.151  Sum_probs=196.4

Q ss_pred             hhCccchHHHHHHHHHHHHhhC--CCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCCccccccC
Q 017282           90 LTKPVTWPPLIWGIVCGAAASG--NFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRPIPSGAIS  165 (374)
Q Consensus        90 L~RP~~~~~~~~~~~~G~~~~g--~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rpl~sG~is  165 (374)
                      ++||+.....+++...|+..+.  ..++.      .++..++++.+..+++|++||++|+|+|++|+  ++||+++|++|
T Consensus         1 L~Kpri~~lv~~ta~~G~~lA~~~~~~~~------~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGris   74 (341)
T PLN02776          1 LSKARLSALVVATSGAGFVLGSGEAIDLP------GLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRIS   74 (341)
T ss_pred             CCcchhHHHHHHHHHHHHHHhcCCCCCHH------HHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCCC
Confidence            5799999999999999998642  23432      23344556777899999999999999999987  79999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHHH-HHHHH
Q 017282          166 ENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISLP-WWAGQ  243 (374)
Q Consensus       166 ~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp-~~~~~  243 (374)
                      +++++.++..+.++++.+..+..      |+....++++++++ .+.||    .+||++++ |.++|...|.+| +++|.
T Consensus        75 ~~~A~~~~~~l~~~g~~~l~~~~------n~l~~~l~~~~~~ly~~vYt----~lKR~t~~-~~~lG~~~Ga~ppL~Gw~  143 (341)
T PLN02776         75 VPHAVAWAVVVGAAGVALLAYKT------NMLTAGLGAGNILLYAFVYT----PLKQIHPA-NTWVGAVVGAIPPLMGWA  143 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH------hHHHHHHHHHHHHHHHHHHH----hHccCCch-hHHHHHHHHHHHHHHHHH
Confidence            99999999998888875543321      56677777776654 67999    49999986 789999999655 45667


Q ss_pred             HHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceec--ChhhHHHHHHHHHHHHHHHHHHHHhhhhHH
Q 017282          244 ALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAF--GPETAKWICVGAIDITQISVAGYLLGAGKP  321 (374)
Q Consensus       244 a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~--G~~~a~~l~~~~~~l~~l~l~~~~~~~~~~  321 (374)
                      +++|++++.++++++..++|+........++|+|||+++|++++|+..  |+++++.+..+.+.+..++++++..+....
T Consensus       144 Avtg~~~~~~~~Lf~~~~~Wq~pHf~~la~~~~dDy~~ag~pmlpv~~~~g~~ta~~i~~~~~~l~~~~ll~~~~g~~~~  223 (341)
T PLN02776        144 AASGQLDAGAMVLAAALYFWQMPHFMALAYMCRDDYAAGGYRMLSLADATGRRTALVALRNCLYLAPLGFLAYDWGVTSS  223 (341)
T ss_pred             HHcCCCCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHhCCCcccCccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence            889999999999999999999988888888999999999999999976  567777787777777666666666555433


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHH
Q 017282          322 YYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLI  362 (374)
Q Consensus       322 ~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~  362 (374)
                      .|......+.+.+++...+...++..+...+++.++..|+.
T Consensus       224 ~~~~~a~~l~~~~l~~~~~~~~~~~~~~ar~~F~~Sl~yL~  264 (341)
T PLN02776        224 PFALEAALLTAYLAASAASFYREPTNANARKMFHGSLLYLP  264 (341)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHHHH
Confidence            34333444555566666554444444567788888888765

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=1.2e-29  Score=243.78  Aligned_cols=275  Identities=20%  Similarity=0.171  Sum_probs=194.7

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccc
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPS  161 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~s  161 (374)
                      +-++.++++.|+.....+......+.......++.+      ....+++.++.+.++|++|||+|+|+|++|+|+||.+ 
T Consensus         2 ~~~~~~~~~~~~~~~~~a~~~~~l~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~N~~~D~~~D~~n~~~R~~~-   74 (285)
T PRK12872          2 KLLFAFLKLFRYGNLLIAALGQSLVYMASLLLGLPI------SWLLLLITFLIAAAVYIINYLTDLEEDIINKPERVVF-   74 (285)
T ss_pred             hHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHcChh------HHHHHHHHHHHHHHHHHhhhhcCCchhhcCCCchHHH-
Confidence            457899999999999988887777654321223321      1123334567889999999999999999999999988 


Q ss_pred             cccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCc-ccccccchhhHHHHHHHhHHHHH
Q 017282          162 GAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPL-KLKQNGWIGNFALGASYISLPWW  240 (374)
Q Consensus       162 G~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~-~lK~~~~~g~l~vg~~~g~lp~~  240 (374)
                         |++++......+..+++.++.++....  .++..+.+++++.++++.||.||. ++||.+..||+.+|..+|..|.+
T Consensus        75 ---s~~~~~~~~~~l~~i~~~~~~~l~~~~--~~~~~~~~~~~~~~~~~~Ys~~~~~~lk~~p~~~~~~vg~~~g~~~~~  149 (285)
T PRK12872         75 ---SETKAYGLFLLLNVLGLYLGAYLLAVI--GGPKFALIFIIPLILGILYSVFFKRRLKRIPLFKNLVVSLLWALSPLI  149 (285)
T ss_pred             ---HHHHHHHHHHHHHHHHHHHHHHHHHHh--ccHHHHHHHHHHHHHHHHHhChhHHHHhhhhhHhhHHHHHHHHHHHHH
Confidence               456666666666666666666653221  156677888888888999999876 48999988999999999988877


Q ss_pred             HH-HHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH-HHHHHhhh
Q 017282          241 AG-QALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS-VAGYLLGA  318 (374)
Q Consensus       241 ~~-~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~-l~~~~~~~  318 (374)
                      .+ +...+.+++..++.++..+++.+..+..||++|+|+|+++|+||+|+++|+|++++++.....+.+.. +.++..+.
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~fl~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~~~t~~~~~~~~~~~~~~~~~~~~~~~  229 (285)
T PRK12872        150 LGVYYYQLTIFSLLLLYAVFIFLKSFIREIVFDIKDIEGDRKSGLKTLPIVLGKERTLKFLLILNLLFLILLILGVYTGL  229 (285)
T ss_pred             HHHHhcccccchHHHHHHHHHHHHHHHHHHHHhcccchhHHHcCCcccchhcchHHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence            55 34444567777777888888899999999999999999999999999999999999888766666554 44455555


Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhcCcch-HHHHHHHhHHHHHHHHHHHHHH
Q 017282          319 GKPYYALALLALIVPQIVFQFQYFLKDPIK-YDVKYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       319 ~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~gll~~~~  370 (374)
                      .+.++.. +. +..|..+...+.+.+++++ .-.+....-+.+++.|++...+
T Consensus       230 ~~~~~~~-~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~  280 (285)
T PRK12872        230 LPLLLLV-LL-LLLAYVLYYIIKLFAADDKKDLLYLSLLDKEHMLLGLISMLL  280 (285)
T ss_pred             hhHHHHH-HH-HHHHHHHHHHHHHHhcccccchhHHHHHhHHHHHHHHHHHHH
Confidence            4444432 22 2333333333444333333 3334444556677777766544

>KOG1381 consensus Para-hydroxybenzoate-polyprenyl transferase [Coenzyme transport and metabolism]

Probab=99.97  E-value=1e-30  Score=240.74  Aligned_cols=267  Identities=25%  Similarity=0.311  Sum_probs=214.7

Q ss_pred             ccchhHHHHHhhh---CccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHH-HHHHHhhhhccccccccccc
Q 017282           79 QETNKWKIRLQLT---KPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAIN  153 (374)
Q Consensus        79 ~~~~~l~~~l~L~---RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l-~~~a~~~iNd~~D~~~D~~n  153 (374)
                      ..+.+|++|.|++   ||...++..+|+.+..+.+ +.-.++  +  ..++.+|-.|.+ +++++|++||+.|+|.|+++
T Consensus        59 ~~p~r~~pYaqLmRldkPiGTwLLywPCtWSIamaAdag~~p--~--~~mL~LFG~GAllMRgAGCtINDlwDkdlD~KV  134 (353)
T KOG1381|consen   59 SSPKRWKPYAQLMRLDKPIGTWLLYWPCTWSIAMAADAGLLP--S--IKMLALFGVGALLMRGAGCTINDLWDKDLDAKV  134 (353)
T ss_pred             cCCccchhHHHHHhcCCCceeeeeecchHHHHHhccCCCccc--h--hHHHHHhcccHHHhccCCceehhhhhhhhhhhH
Confidence            4456799999998   6899999999999877643 221221  1  135566655555 78899999999999999988


Q ss_pred             C--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHH
Q 017282          154 E--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALG  231 (374)
Q Consensus       154 ~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg  231 (374)
                      +  +.||+++|++|++|++.+....+.+++.+.+.+       |+..+.+|..++...+.|+.    +||.++++++++|
T Consensus       135 eRtklRPlAsG~ls~~qaI~fL~~ql~~gLgiLlqL-------n~ysi~lg~~sl~~v~~ypl----~kr~TY~pq~vLg  203 (353)
T KOG1381|consen  135 ERTKLRPLASGSLSPRQAIGFLGAQLSLGLGILLQL-------NWYSIALGASSLALVITYPL----MKRFTYWPQLVLG  203 (353)
T ss_pred             hhhcccccccCCcchhHHHHHHHHHHHHhHHHHHhc-------cHHHHHhcccccccEEEeeh----hhhcchhHHHHHh
Confidence            7  799999999999999998888777777776655       67788999999999999994    9999999999999


Q ss_pred             HHHhHHHHHHHHHHhCCCCHHH-HHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHH-HHHHHHH
Q 017282          232 ASYISLPWWAGQALFGTLTPDI-IVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVG-AIDITQI  309 (374)
Q Consensus       232 ~~~g~lp~~~~~a~~g~~~~~~-~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~-~~~l~~l  309 (374)
                      .+|+...+++|.+..|+.++.. +-+.+...+|++.++.++.+||.++|.++|+|+.+.++|+++..++..+ ...++.+
T Consensus       204 ltfnwGAllGw~A~~g~~~~s~~~plYls~v~Wtl~YDTIYAHQDK~dDvk~gvkSTALrfG~nTK~wl~gf~a~~ia~L  283 (353)
T KOG1381|consen  204 LTFNWGALLGWCALKGSLSPSAVLPLYLSGVCWTLIYDTIYAHQDKRDDVKIGVKSTALRFGDNTKPWLSGFGAAQIASL  283 (353)
T ss_pred             hhcchhhhhcchhhcCccChhhhhHHHHhhhhhhhhhhhhhhcccchhhhHhcchhhhhhcCCCCchHHhhhhHHHHHHH
Confidence            9999988888888888887743 3455666789999999999999999999999999999999999998776 4456667


Q ss_pred             HHHHHHhhhhHHHHHHHHHHHHHHHHHHHH-HHHhcCcchHHHHHHHhHHHHHH
Q 017282          310 SVAGYLLGAGKPYYALALLALIVPQIVFQF-QYFLKDPIKYDVKYQASAQPFLI  362 (374)
Q Consensus       310 ~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~-~~~~~~~~~~~~~~~~~~~~~l~  362 (374)
                      ...++..+.+++||.. +.. ....+..++ +..++||.+|.++++..++..+.
T Consensus       284 a~aG~~s~q~~pyy~~-lg~-~~~~L~~~i~~vdiDnp~dC~k~f~sN~ntGli  335 (353)
T KOG1381|consen  284 AAAGIASDQTWPYYAA-LGA-VAARLGSQIYKVDIDNPSDCWKKFKSNSNTGLI  335 (353)
T ss_pred             HHhhhccCCCchHHHH-HHH-HHHHHHhheeeeecCChHHHHHHHHhcCcchHH
Confidence            7888888889988875 333 333444444 45699999999999988876544

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=99.97  E-value=4.8e-29  Score=234.54  Aligned_cols=189  Identities=32%  Similarity=0.522  Sum_probs=153.7

Q ss_pred             hHHHHHHHHHHHHhh--CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccc--cCCCCCccccccCHHHHHH
Q 017282           96 WPPLIWGIVCGAAAS--GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAI--NEPYRPIPSGAISENEVIT  171 (374)
Q Consensus        96 ~~~~~~~~~~G~~~~--g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~--n~~~Rpl~sG~is~~~a~~  171 (374)
                      |..++.|++.|....  +..++.  .    ....+++..+.+.++|.+|||+|+|+|+.  |+|+||+++|+++++++..
T Consensus         1 ~~~~~~~~l~~~~~~~~~~~~~~--~----~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~~~~~~~   74 (257)
T PF01040_consen    1 LPLSFLPVLAGLALASGGPFNWP--I----FLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRISPRQALI   74 (257)
T ss_pred             ChHHHHHHHHHHHHHHcCCCCHH--H----HHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHhHHHHHH
Confidence            345677888875533  233442  1    22223334468889999999999999999  7799999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHHHHHHHHHHhCCCCH
Q 017282          172 QIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISLPWWAGQALFGTLTP  251 (374)
Q Consensus       172 ~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~  251 (374)
                      .+.++.++++++++..       ++..+.+.++..+.++.|| +|+++||+++++++.+|+.++..+..++++..++.+.
T Consensus        75 ~~~~~~~l~l~l~~~~-------~~~~~~~~~~~~~~~~~Ys-~~~~lk~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  146 (257)
T PF01040_consen   75 FALILLLLGLLLALLL-------GPWFLLILLLGFLLGLLYS-PPLRLKRRPLWGELVVALVFGLLILLGAYAAGGDPPP  146 (257)
T ss_pred             HHHHHHHHHHHHHHhc-------CchhHHHHHHHHHHHHHHh-hhhhhcceeccchhhHHHhhhHhhhhhhhhcCCcccH
Confidence            8888888888877543       4556777777777889999 8889999999999999999887777776676666677


Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHH
Q 017282          252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKW  298 (374)
Q Consensus       252 ~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~  298 (374)
                      ..++.+...+++...+.+.+|++|+|+|+++|+||+|+++|+++++.
T Consensus       147 ~~~~~~~~~~~~~~~~~~~~~~~D~~~D~~~g~~Tl~v~~G~~~~~~  193 (257)
T PF01040_consen  147 PPFLLAIFFFLLIFAIMFFNDIRDIEGDRKAGRRTLPVLLGEKKARY  193 (257)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhHHHHHHcCCcchHHHHHHHHHHH
Confidence            77888888888889999999999999999999999999999999988

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=99.97  E-value=6.8e-28  Score=230.85  Aligned_cols=215  Identities=20%  Similarity=0.220  Sum_probs=139.0

Q ss_pred             ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCC---CCCchhhHHHHHHHHHHHHHH-HHHHHhhhhcccccccccccC
Q 017282           79 QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGN---FHWNLEDVAKSIVCMIMSGPC-LTGYTQTINDWYDREIDAINE  154 (374)
Q Consensus        79 ~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~---~~~~~~~~~~~ll~l~~ag~l-~~~a~~~iNd~~D~~~D~~n~  154 (374)
                      ....++|.|+++.||++|+.++.|+++|.+.+..   ..+.+     .+++++....+ .+...|.+|||+|+|+|+.|+
T Consensus         3 ~~~~~~~~l~~l~RP~~~~~~~~p~l~G~~lA~~~~~~~~~~-----~~~~ll~~~~i~~Nl~~y~iND~~D~D~Dr~~p   77 (282)
T PRK12875          3 SLGDRLRYLLVLSRPRFWLYLAGPVVVGVAYAADSVADLFSP-----AAVALFAYFLFPANVFLYGVNDVFDADTDELNP   77 (282)
T ss_pred             chHHHHHHHHHHhCccchHHHHHHHHHHHHHHhccCcccccH-----HHHHHHHHHHHHHHHHHhcchhhhhhhccccCC
Confidence            3456889999999999999999999999985421   11221     22222221111 123445589999999999998


Q ss_pred             CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHH
Q 017282          155 PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASY  234 (374)
Q Consensus       155 ~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~  234 (374)
                      +++.   |+...++.......+.+++..++..+....   ++....+.+..+++++.||.||+|+|++++. ++.....+
T Consensus        78 rk~~---~r~~~~s~~~~~~~~~~l~~~l~l~l~~~~---~~~~~~~ll~~i~~~~~YS~pP~rlk~~p~~-~~~~~g~~  150 (282)
T PRK12875         78 KKDR---EREVRYRGDRRVLVAVALSGALALAFLLVL---PPAAWPALLAFLVLSVEYSAPPLRFKTTPVL-DSLSNGLY  150 (282)
T ss_pred             CccC---CCCccHHHHHHHHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHcCCCccchhccHH-HHHHHHHH
Confidence            6543   221112222211122222223333222111   2222233344567899999999999999995 54432223


Q ss_pred             hHHHHHH-HHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHH
Q 017282          235 ISLPWWA-GQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQ  308 (374)
Q Consensus       235 g~lp~~~-~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~  308 (374)
                       .+|.++ ++.++|++++..++.  ..++|+.+++++||+||+|+|+++|+||+|+++|+|++++++....+++.
T Consensus       151 -~~~~~~~y~~~tg~~~~~~l~~--a~~l~~~~~~~in~i~Die~D~~aGi~Tlav~lG~~~a~~~~~~~~~~a~  222 (282)
T PRK12875        151 -ILPGVAAYALVSGSLPPLLAVA--GGWLWAMGMHTFSAIPDIEPDRAAGIRTTATVLGERRTYAYCAACWLLAA  222 (282)
T ss_pred             -HHHHHHHHHHHcCCCcHHHHHH--HHHHHHHHHHHHHhccCHHHHHHcCCccchhhccHhhHHHHHHHHHHHHH
Confidence             356554 467788877655443  45789999999999999999999999999999999999988776554444

>PLN02878 homogentisate phytyltransferase

Probab=99.96  E-value=1.1e-27  Score=226.08  Aligned_cols=181  Identities=25%  Similarity=0.491  Sum_probs=138.1

Q ss_pred             HHHHHHHHHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Q 017282          124 IVCMIMSGPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAV  203 (374)
Q Consensus       124 ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l  203 (374)
                      ++...++..+++.+...+|||+|+|+|++|||+||+|||++|+++++.....+.++|+.+++.++.     .+ .+...+
T Consensus        25 ~l~~~~~~l~~niyivglNd~~D~EIDkINkP~rPIpSG~iS~~~a~~~~~~~~~lg~~la~~~g~-----~~-l~~al~   98 (280)
T PLN02878         25 LLEALVPALLMNIYIVGLNQLYDIEIDKVNKPYLPLASGEFSVATGVAIVTSFAIMSFGMGWIVGS-----WP-LFWALF   98 (280)
T ss_pred             HHHHHHHHHhhhhheechhhhhhhcccccCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHCh-----HH-HHHHHH
Confidence            444556667788889999999999999999999999999999999999999999999998887632     12 233334


Q ss_pred             HHHHhheecCC--CCcccccccchhhHHHHHHHhH---HHHHHH--HHHhCC---CCHHHHHHHHHHHHHHHHHHHHhhc
Q 017282          204 GGSLLSYIYSA--PPLKLKQNGWIGNFALGASYIS---LPWWAG--QALFGT---LTPDIIVLTLLYSIAGLGIAIVNDF  273 (374)
Q Consensus       204 ~~~~l~~~Ys~--pP~~lK~~~~~g~l~vg~~~g~---lp~~~~--~a~~g~---~~~~~~ll~~~~~l~~~~~~~~~d~  273 (374)
                      .+.++++.||.  ||+|+||+++....+....-+.   ++++.+  ....|.   .+...++..+.++++..+++++||+
T Consensus        99 ~~~~lg~~YS~~lp~lr~k~~~~~aa~~i~~vr~~~v~l~~~~h~~~~~~g~~~~~~~~~~~~~~f~~~f~~~i~i~KDi  178 (280)
T PLN02878         99 VSFVLGTAYSINLPLLRWKRSAVAAASCILAVRAVVVQLAFFLHMQTHVLGRPAVFTRPLIFATAFMCFFSVVIALFKDI  178 (280)
T ss_pred             HHHHHHHHHHccCCCcccHHHHHHHHHHHHHHHHHHhhhhHHHhHHHHHhCCccccchhHHHHHHHHHHHHHHHHHHhhC
Confidence            55578999996  9999999998766443222111   222222  122342   3334444444566777889999999


Q ss_pred             cChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHH
Q 017282          274 KSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQIS  310 (374)
Q Consensus       274 ~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~  310 (374)
                      +|+|||++.|++|+|+++|++++.+++..++.+++..
T Consensus       179 ~DieGD~~~Gi~Tlpv~lG~~~~~~i~~~ll~~aY~~  215 (280)
T PLN02878        179 PDVEGDRIFGIRSFSVRLGQKRVFWLCVNLLEMAYAA  215 (280)
T ss_pred             cCchhHHHCCCceechhhChHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999998887788764

>PRK13591 ubiA prenyltransferase; Provisional

Probab=99.94  E-value=6.8e-25  Score=210.33  Aligned_cols=172  Identities=20%  Similarity=0.257  Sum_probs=123.3

Q ss_pred             HHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhhee
Q 017282          132 PCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYI  211 (374)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~  211 (374)
                      .+...++|++|||+|+|+|++|+|+||.+    +++.++.++.+..++|+.+++..       ++  ..+++++.+.++.
T Consensus        68 ~L~~~s~~~iNd~~D~eiD~IN~P~r~~~----s~~~a~~ls~la~llGl~La~~~-------g~--~ll~ll~~l~g~l  134 (307)
T PRK13591         68 GLIIYSVYTLDRALDSEEDAVNRSELIGS----NKKIGLLVSLLAFLLGTYILAMD-------GM--LLLAFLPFITGYL  134 (307)
T ss_pred             HHHHHHHHHHhhhccchhhhccCcccccc----CHHHHHHHHHHHHHHHHHHHHHH-------hH--HHHHHHHHHHHHH
Confidence            35677899999999999999999999987    67777777777766676666644       33  2356788888999


Q ss_pred             cCCC----Cc--ccccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCc
Q 017282          212 YSAP----PL--KLKQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQ  285 (374)
Q Consensus       212 Ys~p----P~--~lK~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~  285 (374)
                      ||.+    |+  ++|..+.+||+++|.++|...+.+.....+.. .......+..+...++..++||++|+|+|++.|+|
T Consensus       135 YS~Glk~~P~plklK~~~glGnl~V~i~~G~~i~g~~g~~~~~~-~~~~~i~l~~~~~l~~~~iindirDiEGDr~~G~k  213 (307)
T PRK13591        135 YSKGIKIGKFALKLKGGLGVKNIVVGITWGGFIAGIAGSYCGSL-IPVGLIFLFFGVKLFINSCVYDFKDVKGDTLAGIK  213 (307)
T ss_pred             hcCCCCCCCccccccCCCchhHHHHHHHHHHHHHHHHHhhhhhH-HHHHHHHHHHHHHHHHHHHHHHhhhhHhHHHcCCe
Confidence            9986    55  67777777999999999975532211111221 11111111222223566789999999999999999


Q ss_pred             ccceecChhhHHHHHHHHHHHHHHHH-HHHHhh
Q 017282          286 SLPVAFGPETAKWICVGAIDITQISV-AGYLLG  317 (374)
Q Consensus       286 TLpv~~G~~~a~~l~~~~~~l~~l~l-~~~~~~  317 (374)
                      |+|+++|++++++++..+..++++.+ ++...|
T Consensus       214 TLPV~lG~~~A~~l~~~l~~~~~l~li~~~~~g  246 (307)
T PRK13591        214 TLPVSLGEQKTRNLLLGIHLFSHLVLGIALIFG  246 (307)
T ss_pred             eEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999887777666543 333444

>PRK13592 ubiA prenyltransferase; Provisional

Probab=99.93  E-value=5e-24  Score=202.72  Aligned_cols=219  Identities=16%  Similarity=0.156  Sum_probs=142.5

Q ss_pred             HHHHHHHHhhhhcccccccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhhe
Q 017282          131 GPCLTGYTQTINDWYDREIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSY  210 (374)
Q Consensus       131 g~l~~~a~~~iNd~~D~~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~  210 (374)
                      +++..+++|++|||+|+|+|++|+|+||+|||++|+++++.++..+.++++.++...            ...+...++.+
T Consensus        55 vf~~~~~gniiNDy~D~EIDrIN~P~RPLPsG~VS~~~A~~~si~L~~~~l~L~~l~------------~i~i~~~~i~~  122 (299)
T PRK13592         55 VFGFWMILRIADDFKDYETDRRLFPHRALPSGRVKKKDLAIALSFIVAVSVLLNVLF------------MNNVGWFLFLY  122 (299)
T ss_pred             HHHHHHHhHHHHHHhhHHHhhhcCCCCCCCcCCCCHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHH
Confidence            456788999999999999999999999999999999999998888866666555433            12223334455


Q ss_pred             ec-----CCCCcccccccchhhHHHHHHHhHHHHHH------HH--HHhCCCCHH--HHHHHHHHHHHHHHHHHHhhccC
Q 017282          211 IY-----SAPPLKLKQNGWIGNFALGASYISLPWWA------GQ--ALFGTLTPD--IIVLTLLYSIAGLGIAIVNDFKS  275 (374)
Q Consensus       211 ~Y-----s~pP~~lK~~~~~g~l~vg~~~g~lp~~~------~~--a~~g~~~~~--~~ll~~~~~l~~~~~~~~~d~~D  275 (374)
                      .|     +.   ++|+.++.||+.++...|.....+      .+  ...|.....  .+++++..++..+++++.+|++|
T Consensus       123 lY~~lm~a~---~~K~~~l~gNl~Va~ltg~~f~~g~~~~~~~fg~~~~g~~~~~~~~~~l~l~afl~~l~rEI~KdieD  199 (299)
T PRK13592        123 IYGTLMSFW---FFKRDKIQNSLPLALVTHNPVMMILNLYTISFVCYKYNLPLLSLPTVLLAFTMYFPSLIWEVCRKIRA  199 (299)
T ss_pred             HHHHHHHHH---HHcccCCCcchhhhhhccchhhhchhhhhhhhhhhhcccchhhHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            55     65   799999999999988877433111      11  112322211  24556677788899999999999


Q ss_pred             hHhhHHCCCcccceecChhhHHHHHHHHHHHHHH-HHHHHH-hhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHH--H
Q 017282          276 VEGDRAMGLQSLPVAFGPETAKWICVGAIDITQI-SVAGYL-LGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYD--V  351 (374)
Q Consensus       276 ~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l-~l~~~~-~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~--~  351 (374)
                       |||++ |.+|+|+.+|.|+|.++...+..+..+ +.++++ .|.  ....  +..+...+...+...++++|.+.+  .
T Consensus       200 -~gd~~-~~~Tlpi~~G~kkA~~ia~~l~ii~v~~s~lp~~~~g~--~g~~--~l~~~~~~~l~~~~~~lk~p~~~~~~~  273 (299)
T PRK13592        200 -PKDET-EYVTYSKLFGYKKATRFIEVVTLLDILTNFALLWNISH--VGVV--VLVLNVIWMTVQFEQFIKSPTRFNIRE  273 (299)
T ss_pred             -Ccccc-CCeeechhccchhHHHHHHHHHHHHHHHhhHHHHHhhh--hHHH--HHHHHHHHHHHHHHHHhcCCCcchhhH
Confidence             88875 599999999999999887765544443 345554 331  1111  111222333334445677775421  2


Q ss_pred             HHHHhHHHHHHHHHHHHHH
Q 017282          352 KYQASAQPFLILGLLVTAL  370 (374)
Q Consensus       352 ~~~~~~~~~l~~gll~~~~  370 (374)
                      +-++..+..+.++++..++
T Consensus       274 ~~~~~~ki~~~l~~la~~~  292 (299)
T PRK13592        274 RVERYTYITETTMVLSVAV  292 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            3333444444444444443

>KOG4581 consensus Predicted membrane protein [Function unknown]

Probab=99.90  E-value=2.3e-24  Score=194.72  Aligned_cols=297  Identities=18%  Similarity=0.215  Sum_probs=220.9

Q ss_pred             ccCCchhhhhhhccccccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhh--HHHHHHHHHHHHHHHHHHHhh
Q 017282           63 ASGSSFNQLLGIKGAAQETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLED--VAKSIVCMIMSGPCLTGYTQT  140 (374)
Q Consensus        63 ~~~~~~~~~~~~~~~~~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~--~~~~ll~l~~ag~l~~~a~~~  140 (374)
                      .|.+-..+|-|-...|+...+.+.|+-..||+.+..++.|..+|.+.+-.-+|. ++  +...++|.+ +..-++.++|.
T Consensus        40 ~gv~~~~rltghp~~sg~~~k~~syllalrpws~sasl~p~~lgsalayrs~~~-~d~~l~~~fl~a~-avlavh~agnl  117 (359)
T KOG4581|consen   40 AGVAEQDRLTGHPQRSGTFMKCASYLLALRPWSFSASLTPTALGSALAYRSHGA-EDFRLATFFLCAF-AVLAVHCAGNL  117 (359)
T ss_pred             cCCcccccccCCCCcchHHHHHHHHHhhhcccccccccchHhhhhHHHHhhccc-cchhHHHHHHHHh-hheeeecccch
Confidence            345556677777777888999999999999999999999999998754222221 11  122334433 22336889999


Q ss_pred             hhccccc--ccccccCCCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhH----HHHHHHHHHHhheecCC
Q 017282          141 INDWYDR--EIDAINEPYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPT----IFWLAVGGSLLSYIYSA  214 (374)
Q Consensus       141 iNd~~D~--~~D~~n~~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~----~~~l~l~~~~l~~~Ys~  214 (374)
                      +|.|+|.  .+|.+...+|.+++..+.+.++..++..+..+++.....+...    .|.    ...+...+.--.++|+.
T Consensus       118 vntyfdf~kgid~kkaddrtlvd~il~~~dvv~~g~~ly~~gc~~~~~l~~l----sp~klehlaliyfggls~sflytg  193 (359)
T KOG4581|consen  118 VNTYFDFIKGIDHKKADDRTLVDHILEKDDVVRFGAFLYMAGCGCAACLAVL----SPAKLEHLALIYFGGLSGSFLYTG  193 (359)
T ss_pred             hhhhhhhhhccccccccchhHHHHhcChhheehhhHHHHHhcchHHHHHHhC----CHhhhhhhhhhhccCcccceeEec
Confidence            9999998  5788877899999999999999999998888887766554432    121    12222334445789997


Q ss_pred             CCcccccccchhhHHHHHHHhHHHHH-HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          215 PPLKLKQNGWIGNFALGASYISLPWW-AGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       215 pP~~lK~~~~~g~l~vg~~~g~lp~~-~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      +- .+||..+ |++++-+.||.+.++ +...++|++++.++..++|..+-+-++.+.||.||.|.||++|+-|+++.+|+
T Consensus       194 gi-gfkyial-gdliili~fgpiavlfaf~~q~g~l~~~~l~yaiplalnteailhsnntrd~dndr~agivtlailig~  271 (359)
T KOG4581|consen  194 GI-GFKYIAL-GDLIILILFGPIAVLFAFAIQTGHLAIFPLGYAIPLALNTEAILHSNNTRDADNDREAGIVTLAILIGP  271 (359)
T ss_pred             cc-ceEEEec-cCEEEEEeechHHHHHHHHHhcCceeEEeehheeeeccchHHHhccCCCcccccccccCeEEEEEeecc
Confidence            64 6899988 788777778876655 44578999998888888899888899999999999999999999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHHHHh
Q 017282          294 ETAKWICVGAIDITQISVAGYLLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVTALA  371 (374)
Q Consensus       294 ~~a~~l~~~~~~l~~l~l~~~~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~~~~  371 (374)
                      ..+..++..++...++....+...... ++  .+.++++|+.+ +++...++.+..+...++++++.++||++...-+
T Consensus       272 t~s~ily~~llf~py~lf~i~~~~~si-~~--~lplltip~af-qiek~frneqa~~~lp~qtakln~~~gi~yv~~~  345 (359)
T KOG4581|consen  272 TASHILYAMLLFAPYLLFFIFALHCSI-SF--ALPLLTIPMAF-QIEKQFRNEQAFHKLPQQTAKLNFFFGIFYVFAC  345 (359)
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHHHHH-HH--HhHHhhchhHH-hHHHHhhhHhhhhhcchhhhhHHHHHHHHHHHHH
Confidence            988888887776666543322222222 22  35667889876 4555567777788888999999999999875443

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=99.88  E-value=1.5e-20  Score=180.95  Aligned_cols=192  Identities=22%  Similarity=0.225  Sum_probs=126.8

Q ss_pred             cchhHHHHHhhhCccchHHHHHHHHHHHHhhCCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhccccccccccc--CCCC
Q 017282           80 ETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAIN--EPYR  157 (374)
Q Consensus        80 ~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n--~~~R  157 (374)
                      .++++++|++++||+.|...++...-+.+..+..+..  .+. ..+..++++.+..+++|++||++|+|+|++|  +|+|
T Consensus         7 ~~~~l~~~l~L~RP~~w~~nll~~~~~~~a~~~~~~~--~~~-~~llafl~~~l~~sa~y~iND~~D~e~Dr~~prk~~R   83 (295)
T PRK12324          7 PKNLLAGYLKLLRPKQWIKNLFVFAAPIFAGNLLNPG--ALL-KVLLAFVLFCLASSAVYLVNDIRDVEADRLHPTKRNR   83 (295)
T ss_pred             hHHHHHHHHHHhCchHHHHHHHHHHHHHHHHhhcccc--hHH-HHHHHHHHHHHHHHHHHHHHhHHHHHhhccCCCCCCC
Confidence            3458999999999999988766443332222111211  111 2233444555678899999999999999998  4899


Q ss_pred             CccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCcccccccchhhHHHHHHHhHH
Q 017282          158 PIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKLKQNGWIGNFALGASYISL  237 (374)
Q Consensus       158 pl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l  237 (374)
                      |+++|++++++++.++.++.++++.+++.+       ++.++.+.+...+..+.||.   ++|++++++++.++..++. 
T Consensus        84 PlasG~is~~~A~~~~~~l~~~~l~la~~l-------~~~~~~~~~~~~~~~~~Ys~---~lK~~~~~d~l~va~~~~l-  152 (295)
T PRK12324         84 PIASGVVSVSLAYILAVVLLVASLALAYLL-------SPKLALVLLVYLVLNLAYSF---KLKHQPVLDVFCIASGFVL-  152 (295)
T ss_pred             CCCCCccCHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHhhH---HhcCCchhhHHHHHHHHHH-
Confidence            999999999999999999988888887765       44455555666677899995   8999999999998888864 


Q ss_pred             HHHHHHHHhCCCCHHHHHH--HHHHHHHHHHHHHHhhccChHhhHHCCCcc
Q 017282          238 PWWAGQALFGTLTPDIIVL--TLLYSIAGLGIAIVNDFKSVEGDRAMGLQS  286 (374)
Q Consensus       238 p~~~~~a~~g~~~~~~~ll--~~~~~l~~~~~~~~~d~~D~e~D~~aG~~T  286 (374)
                      +++.|....+ .+...|++  ++..+++-....-..+.++.++|.+..+++
T Consensus       153 r~~~G~~a~~-~~~s~wll~~~~~~~lfla~~kR~~E~~~~~~~~~~~r~~  202 (295)
T PRK12324        153 RAIAGGVAIG-VPLSPWLLLCTALLSLFLAAGKRKAELRLLEDTGAKHRKV  202 (295)
T ss_pred             HHHHHHHHhC-CCccHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccc
Confidence            5554443333 33333332  222222222223344555555554444444

>PRK08238 hypothetical protein; Validated

Probab=99.86  E-value=1.2e-19  Score=185.71  Aligned_cols=200  Identities=20%  Similarity=0.234  Sum_probs=146.9

Q ss_pred             hhhhhhhcccc-----ccchhHHHHHhhhCccchHHHHHHHHHHHHhhCCC-CCchhhHHHHHHHHHHHHHHHHHHHhhh
Q 017282           68 FNQLLGIKGAA-----QETNKWKIRLQLTKPVTWPPLIWGIVCGAAASGNF-HWNLEDVAKSIVCMIMSGPCLTGYTQTI  141 (374)
Q Consensus        68 ~~~~~~~~~~~-----~~~~~l~~~l~L~RP~~~~~~~~~~~~G~~~~g~~-~~~~~~~~~~ll~l~~ag~l~~~a~~~i  141 (374)
                      .++.-..++..     ..+.++++|++++||+.|...++.. ++++.++.+ +.  ..+. ..+..++++.++.+++|++
T Consensus       170 l~~~a~~~~~~~~~~~~~~~~~~~~~~l~Rp~q~~kn~l~~-~p~l~a~~~~~~--~~~~-~~~~~f~~~~l~~sa~~~~  245 (479)
T PRK08238        170 VARAARALGPVERVFPPRPARLRTWLKALRVHQWAKNLLVF-VPLLAAHQFGDL--QALL-AALLAFLAFSLCASAVYIL  245 (479)
T ss_pred             HHHHHHHcCCcceecCCCchHHHHHHHHhCCcHHHHHHHHH-HHHHHhcccCCh--HHHH-HHHHHHHHHHHHHHHHHHH
Confidence            44444444442     4457899999999999998766543 355544433 22  1122 2344555666788999999


Q ss_pred             hcccccccccccC--CCCCccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhheecCCCCccc
Q 017282          142 NDWYDREIDAINE--PYRPIPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLLSYIYSAPPLKL  219 (374)
Q Consensus       142 Nd~~D~~~D~~n~--~~Rpl~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l~~~Ys~pP~~l  219 (374)
                      ||++|+|+|++|+  |+||+++|++|+++++.++.+++++++.+++.+       ++.++.+.+..+++.+.||.   ++
T Consensus       246 ND~~D~e~Dr~~~rk~~RPlasG~is~~~A~~~~~~l~~~~~~l~~~l-------~~~~~~~~~~~~~~~~~Ys~---~l  315 (479)
T PRK08238        246 NDLLDLEADRAHPRKRRRPFASGALPIPFGLAAAPLLLLAGLALALAL-------GPAFLLVLLAYLALTLAYSL---RL  315 (479)
T ss_pred             HhhHHhhhhccCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHH-------hHHHHHHHHHHHHHHHHhhH---Hh
Confidence            9999999999995  899999999999999999999999998888775       44455666666677899995   79


Q ss_pred             ccccchhhHHHHHHHhHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHhhccChHhhHHCCC
Q 017282          220 KQNGWIGNFALGASYISLPWWAGQALFGTLTPDIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGL  284 (374)
Q Consensus       220 K~~~~~g~l~vg~~~g~lp~~~~~a~~g~~~~~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~  284 (374)
                      ||+++++++++|+.+++-++.| .+..+ .++..|++...+ ++.+...+.+.+.|.++++..|.
T Consensus       316 Kr~~~~~~~~la~~~~lr~~~G-~~a~~-~~~s~wll~~~~-~~~l~la~~KR~~El~~~~~~~~  377 (479)
T PRK08238        316 KRKVLVDVLTLAALYTLRIIAG-AAAIG-VALSFWLLAFSM-FFFLSLALVKRYTELRRALQRGK  377 (479)
T ss_pred             cCCccccchHHHHHHHHHHHHH-HHHhc-cCHHHHHHHHHH-HHHHHHHHHHhHHHHHHHHhcCC
Confidence            9999999999999886544444 34444 666666654333 33456678899999999988886

>KOG1380 consensus Heme A farnesyltransferase [Coenzyme transport and metabolism]

Probab=99.84  E-value=5.9e-21  Score=180.17  Aligned_cols=268  Identities=18%  Similarity=0.172  Sum_probs=191.7

Q ss_pred             hhHHHHHhhhCccchHHHHHHHHHHHHhh-CCCCCchhhHHHHHHHHHHHHHHHHHHHhhhhcccccccccccC--CCCC
Q 017282           82 NKWKIRLQLTKPVTWPPLIWGIVCGAAAS-GNFHWNLEDVAKSIVCMIMSGPCLTGYTQTINDWYDREIDAINE--PYRP  158 (374)
Q Consensus        82 ~~l~~~l~L~RP~~~~~~~~~~~~G~~~~-g~~~~~~~~~~~~ll~l~~ag~l~~~a~~~iNd~~D~~~D~~n~--~~Rp  158 (374)
                      ...+.|+||.||+...+.+.....|++.+ +.++++      .+++..++..+..+++|.+|++++...|.+++  ++||
T Consensus        92 k~~~~y~eLsK~rLT~LVV~tt~~gYalap~p~s~~------~l~~~tvGT~L~S~sANaiNQ~~E~~~DsqM~RT~~Rp  165 (409)
T KOG1380|consen   92 KYARCYLELSKPRLTMLVVLTTMTGYALAPGPFSFP------TLLYTTVGTGLCSASANAINQIFEPPFDSQMKRTQNRP  165 (409)
T ss_pred             chHHHHHHhcccceEEEEeeeccccccccccCCCcc------hhHHHhhhhHHHHhhhHhhhhhccCCchhhhHhhcccc
Confidence            45789999999999999999999999854 556664      23444445556778999999999999999998  6999


Q ss_pred             ccccccCHHHHHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-heecCCCCcccccccchhhHHHHHHHhHH
Q 017282          159 IPSGAISENEVITQIWVLLLAGLGLAGLLDVWAGHDFPTIFWLAVGGSLL-SYIYSAPPLKLKQNGWIGNFALGASYISL  237 (374)
Q Consensus       159 l~sG~is~~~a~~~~~~l~~l~l~l~~~l~~~~g~~~~~~~~l~l~~~~l-~~~Ys~pP~~lK~~~~~g~l~vg~~~g~l  237 (374)
                      +++|++||.++..++.+....|+.+.++      +.||....+|...+++ +.+||    ++||... .|.++|...|.+
T Consensus       166 lv~g~isp~hA~~fAt~~g~~G~slL~~------gvNpl~a~Lga~Ni~LY~~vYT----PlKrihi-inTWvGavVGAI  234 (409)
T KOG1380|consen  166 LVRGRISPLHAVTFATLTGTAGVSLLAF------GVNPLAAALGAGNIFLYAGVYT----PLKRIHI-INTWVGAVVGAI  234 (409)
T ss_pred             cccCccChHHHHHHHHHhccccceeeee------cccHHHHHHhhcchheeecccc----chhhhhh-hhhHHHHHhccC
Confidence            9999999999999888887777665543      2378888888887765 88999    7999988 699999999988


Q ss_pred             HH-HHHHHHhCCCCHHHHHHHHHHHHHHHHH--HHHhhccChHhhHHCCCcccceecChhhHHHHHHHHHHHHHHHHHHH
Q 017282          238 PW-WAGQALFGTLTPDIIVLTLLYSIAGLGI--AIVNDFKSVEGDRAMGLQSLPVAFGPETAKWICVGAIDITQISVAGY  314 (374)
Q Consensus       238 p~-~~~~a~~g~~~~~~~ll~~~~~l~~~~~--~~~~d~~D~e~D~~aG~~TLpv~~G~~~a~~l~~~~~~l~~l~l~~~  314 (374)
                      |. +||.+..|.+++..++++...+.|.+--  .+..++  ++|..++|.+++++.-..-..+.-....+.+..++...-
T Consensus       235 PPLMGwAAasg~l~~ga~iLa~~LyaWQfPHFnaLS~~l--R~DYs~~GY~Mma~~np~l~rr~alr~s~a~~~L~~~~~  312 (409)
T KOG1380|consen  235 PPLMGWAAASGLLDPGAMILAGILYAWQFPHFNALSWNL--RNDYSKAGYRMMAVTNPGLCRRVALRYSLAFLPLSYAAP  312 (409)
T ss_pred             CccchhhhhccCCCccHHHHHHHHHHhcccchhhhhhhh--chhhhhccEEEEEeeccchhhHHHHHHHHHHhhhhcccc
Confidence            75 4667788999999999999999987521  112222  355669999999998754444333333222222333223


Q ss_pred             HhhhhHHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHhHHHHHHHHHHHH
Q 017282          315 LLGAGKPYYALALLALIVPQIVFQFQYFLKDPIKYDVKYQASAQPFLILGLLVT  368 (374)
Q Consensus       315 ~~~~~~~~~~~~l~~l~lpl~~~~~~~~~~~~~~~~~~~~~~~~~~l~~gll~~  368 (374)
                      ..++..++|.+-...+..-+.+..+|...+...+...+++..+.+|+=.-+++.
T Consensus       313 ~~~lT~~wf~i~s~~~na~l~~~afkFY~~~d~~~aRklF~aSLlhLP~lmll~  366 (409)
T KOG1380|consen  313 STDLTTWWFAIESLPLNAYLAYLAFKFYRDRDYHNARKLFFASLLHLPLLMLLM  366 (409)
T ss_pred             ccCcccceeeeccccHhHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHH
Confidence            445554455432333444555666665445555678888889888876444443

>PRK12873 ubiA prenyltransferase; Reviewed

Probab=93.36  E-value=2.1  Score=41.58  Aligned_cols=37  Identities=22%  Similarity=0.074  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET  295 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~  295 (374)
                      ..++...+-..+||+.|+|-|+++-+ |.=|..-|+=.
T Consensus        52 g~~l~~~a~~~~Nd~~D~~iD~~~~RT~~RPl~sG~is   89 (294)
T PRK12873         52 GGLAVSGAGCIANDLWDRRIDRKVERTKNRPLARGKIS   89 (294)
T ss_pred             HHHHHHHHHHHHHHHHHHhhccCCCcCCCCCCCCCCCC
Confidence            33444556689999999999998877 57777777543

>COG0382 UbiA 4-hydroxybenzoate polyprenyltransferase and related prenyltransferases [Coenzyme metabolism]

Probab=93.29  E-value=5.4  Score=38.39  Aligned_cols=40  Identities=23%  Similarity=0.225  Sum_probs=28.5

Q ss_pred             HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282          255 VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE  294 (374)
Q Consensus       255 ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~  294 (374)
                      +..+..++...+...+||+.|+|-|++.-+ |.=|..-|+-
T Consensus        51 l~~l~~~~~~~ag~~iND~~D~eiD~~n~rt~~RPl~sG~v   91 (289)
T COG0382          51 LAFLAFFLARSAGYVINDLADREIDRINPRTKNRPLPSGRV   91 (289)
T ss_pred             HHHHHHHHHHHHhHHHHHHhhhhccCCCCCccCCCCCCCCC
Confidence            334444556667789999999999998876 4556666654

>PRK12884 ubiA prenyltransferase; Reviewed

Probab=93.04  E-value=2  Score=41.10  Aligned_cols=36  Identities=25%  Similarity=0.200  Sum_probs=28.0

Q ss_pred             HHHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          257 TLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       257 ~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      .+..++...+-...||+-|+|.|++. ++.=|..-|+
T Consensus        43 ~l~~~l~~~a~~~~Nd~~D~~~D~~~-r~~Rpl~~G~   78 (279)
T PRK12884         43 FLTAFFASGSANALNDYFDYEVDRIN-RPDRPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHHhhhhHhhhhcc-CCCCCCCCCC
Confidence            33444556667899999999999998 7777887775

>TIGR02056 ChlG chlorophyll synthase, ChlG

Probab=93.03  E-value=1.7  Score=42.38  Aligned_cols=32  Identities=19%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          261 SIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       261 ~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      .+...+....||+-|.|.|++.+ ++=|+.-|+
T Consensus        64 ~l~~~~~n~~NDy~D~d~D~~~~-~~Rpi~~G~   95 (306)
T TIGR02056        64 PCLTGYTQTINDFYDRDIDAINE-PYRPIPSGA   95 (306)
T ss_pred             HHHHHHHHHHHhHhhhhhhccCC-CCCCCCCCc
Confidence            44556678999999999998776 344555554

This model represents the strictly cyanobacterial and plant-specific chlorophyll synthase ChlG. ChlG is the enzyme (esterase) which attaches the side chain moiety onto chlorophyllide a. Both geranylgeranyl and phytyl pyrophosphates are substrates to varying degrees in enzymes from different sources. Thus, ChlG may act as the final or penultimate step in chlorophyll biosynthesis (along with the geranylgeranyl reductase, ChlP).

>PLN02809 4-hydroxybenzoate nonaprenyltransferase

Probab=92.64  E-value=3.8  Score=39.67  Aligned_cols=37  Identities=19%  Similarity=0.146  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhhccChHhhHHCCC-cccceecChhhH
Q 017282          260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPETA  296 (374)
Q Consensus       260 ~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~a  296 (374)
                      .++...+-..+||+.|+|-|+++.+ +.=|..-|+=..
T Consensus        54 ~~~~~~a~~~~Nd~~Dr~iD~~~~RT~~RPL~sG~is~   91 (289)
T PLN02809         54 ALLLRGAGCTINDLLDRDIDKKVERTKLRPIASGALTP   91 (289)
T ss_pred             HHHHHHHHHHHHhhHHhccccCCCCCCCCCCCCCCCCH
Confidence            3445556689999999999998766 577877785433

>PRK12324 phosphoribose diphosphate:decaprenyl-phosphate phosphoribosyltransferase; Provisional

Probab=91.98  E-value=7.5  Score=37.82  Aligned_cols=33  Identities=33%  Similarity=0.510  Sum_probs=22.6

Q ss_pred             HHHHHHHHHHhhccChHhhHHC-CCcccceecCh
Q 017282          261 SIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGP  293 (374)
Q Consensus       261 ~l~~~~~~~~~d~~D~e~D~~a-G~~TLpv~~G~  293 (374)
                      ++...+...+||+.|+|.|++. .++.=|..=|+
T Consensus        56 ~l~~sa~y~iND~~D~e~Dr~~prk~~RPlasG~   89 (295)
T PRK12324         56 CLASSAVYLVNDIRDVEADRLHPTKRNRPIASGV   89 (295)
T ss_pred             HHHHHHHHHHHhHHHHHhhccCCCCCCCCCCCCc
Confidence            3444566799999999999996 33444554454

>PRK13595 ubiA prenyltransferase; Provisional

Probab=91.77  E-value=8.3  Score=37.49  Aligned_cols=25  Identities=28%  Similarity=0.061  Sum_probs=18.4

Q ss_pred             HHHHHHHhhccChHhhHHCCCcccce
Q 017282          264 GLGIAIVNDFKSVEGDRAMGLQSLPV  289 (374)
Q Consensus       264 ~~~~~~~~d~~D~e~D~~aG~~TLpv  289 (374)
                      .....-+||+-|+|.|+++-++ =++
T Consensus        60 n~~~~giND~fD~eiDa~Npr~-~~i   84 (292)
T PRK13595         60 NLLIYGLNDLADRETDAASPRK-GGW   84 (292)
T ss_pred             HHHHHHHHhhhhhhhhccCCCC-CCC
Confidence            3456789999999999876544 344

>PRK12882 ubiA prenyltransferase; Reviewed

Probab=91.43  E-value=9.4  Score=36.43  Aligned_cols=36  Identities=22%  Similarity=0.139  Sum_probs=25.8

Q ss_pred             HHHHHHHHHHHHHhhccChHhhHHCCCcccceecChh
Q 017282          258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE  294 (374)
Q Consensus       258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~  294 (374)
                      +..++...+-...||+-|+|-|+.. ++.=|..-|+=
T Consensus        45 l~~~l~~~~~~~~Nd~~D~~iD~~~-~~~Rpl~~G~i   80 (276)
T PRK12882         45 AAVFLATGAGNAINDYFDREIDRIN-RPDRPIPSGAV   80 (276)
T ss_pred             HHHHHHHHHHHHHHHHhhhcccccc-CCCCCcCCCCc
Confidence            3344555667889999999999965 46667766653

>PRK12888 ubiA prenyltransferase; Reviewed

Probab=91.33  E-value=1.8  Score=41.74  Aligned_cols=33  Identities=21%  Similarity=0.061  Sum_probs=25.7

Q ss_pred             HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (374)
Q Consensus       131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~  163 (374)
                      ..+.+.+-.++|++.|+|.|++.+ |+=|+.-|.
T Consensus       168 ~~~w~~~~~~i~a~~D~e~D~~~Gv~sl~v~~G~  201 (284)
T PRK12888        168 VGLWIGGFDLIYACQDAEVDRRIGVRSVPARFGV  201 (284)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHCCCcCcchhhCc
Confidence            345666788999999999999887 777776553

>TIGR01474 ubiA_proteo 4-hydroxybenzoate polyprenyl transferase, proteobacterial

Probab=91.25  E-value=5.3  Score=38.42  Aligned_cols=35  Identities=20%  Similarity=0.181  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282          261 SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET  295 (374)
Q Consensus       261 ~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~  295 (374)
                      ++...+-...||+-|+|-|++..+ +.=|..-|+-.
T Consensus        50 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~is   85 (281)
T TIGR01474        50 ILMRGAGCVINDIWDRDFDPQVERTKSRPLASGAVS   85 (281)
T ss_pred             HHHHHHHHHHHhHhhhcccccCCcccCCCCCCCCcC
Confidence            444556689999999999987654 24555556543

A fairly deep split by both clustering (UPGMA) and phylogenetics (NJ tree) separates this group (mostly Proteobacterial and mitochondrial), with several characterized members, from another group (mostly archaeal and Gram-positive bacterial) lacking characterized members.

>PRK12875 ubiA prenyltransferase; Reviewed

Probab=90.40  E-value=4.3  Score=39.17  Aligned_cols=18  Identities=22%  Similarity=0.121  Sum_probs=15.4

Q ss_pred             HHhhccChHhhHHCCCcc
Q 017282          269 IVNDFKSVEGDRAMGLQS  286 (374)
Q Consensus       269 ~~~d~~D~e~D~~aG~~T  286 (374)
                      .+||+.|+|.|+...+|.
T Consensus        63 ~iND~~D~D~Dr~~prk~   80 (282)
T PRK12875         63 GVNDVFDADTDELNPKKD   80 (282)
T ss_pred             cchhhhhhhccccCCCcc
Confidence            479999999999887775

>PLN00012 chlorophyll synthetase; Provisional

Probab=90.36  E-value=4  Score=41.06  Aligned_cols=31  Identities=19%  Similarity=0.078  Sum_probs=22.0

Q ss_pred             HHHHHHHHhhccChHhhHHCCCcccceecChh
Q 017282          263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGPE  294 (374)
Q Consensus       263 ~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~~  294 (374)
                      ...+-..+||+-|+|-|++++ +.=|+.-|.-
T Consensus       135 ~~~~an~iNDy~D~~iD~~~~-~~Rpi~sG~I  165 (375)
T PLN00012        135 LTGYTQTINDWYDREIDAINE-PYRPIPSGAI  165 (375)
T ss_pred             HHHHHHHHHCeecHhhhccCC-CCCCcCCCcc
Confidence            344567899999999998875 4455555543

>PRK12883 ubiA prenyltransferase UbiA-like protein; Reviewed

Probab=90.08  E-value=5.7  Score=37.93  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          262 IAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       262 l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      +...+-...||+-|+|.|+.. +++=|+.-|+
T Consensus        48 ~~~~a~~~~Nd~~D~~~D~~n-~~~Rpl~sG~   78 (277)
T PRK12883         48 LGCSGGNTINDYFDYEIDKIN-RPNRPLPRGA   78 (277)
T ss_pred             HHHHHHhHHHhhhhHhccccC-CCCCCCCCCc
Confidence            334567899999999999975 4666776664

>PRK12392 bacteriochlorophyll c synthase; Provisional

Probab=89.97  E-value=2.7  Score=41.54  Aligned_cols=31  Identities=16%  Similarity=0.008  Sum_probs=23.7

Q ss_pred             HHHHHHHhhhhcccccccccccC-CCCCcccc
Q 017282          132 PCLTGYTQTINDWYDREIDAINE-PYRPIPSG  162 (374)
Q Consensus       132 ~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG  162 (374)
                      .+...+..++||+-|+|.|+..+ +.=|+.=|
T Consensus       190 ~l~~~~~~~i~d~~D~egD~~~G~kTlpV~~G  221 (331)
T PRK12392        190 FFMAIALIIMNDFKSVEGDKEGGLKSLTVMIG  221 (331)
T ss_pred             HHHHHHHHHHHcccchhhHHHcCCeeeEeEEc
Confidence            34566778899999999999886 56666544

>PRK12872 ubiA prenyltransferase; Reviewed

Probab=89.97  E-value=1.7  Score=41.68  Aligned_cols=44  Identities=20%  Similarity=0.103  Sum_probs=28.9

Q ss_pred             HHHHHhhhhcccccccccccC-CCCCccccccCHHHHHHHHHHHHHHH
Q 017282          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAG  180 (374)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~  180 (374)
                      .....+++||.-|+|.|++++ +.=|..-|+   +.+..+...+.++.
T Consensus       173 ~~~~~~~~~d~~D~e~D~~~G~~Tlpv~lG~---~~t~~~~~~~~~~~  217 (285)
T PRK12872        173 KSFIREIVFDIKDIEGDRKSGLKTLPIVLGK---ERTLKFLLILNLLF  217 (285)
T ss_pred             HHHHHHHHHhcccchhHHHcCCcccchhcch---HHHHHHHHHHHHHH
Confidence            344566899999999999877 666776554   44444444444333

>PF01040 UbiA: UbiA prenyltransferase family; InterPro: IPR000537 The UbiA family of prenyltransferases includes bacterial 4-hydroxybenzoate octaprenyltransferase (gene ubiA); yeast mitochondrial para-hydroxybenzoate--polyprenyltransferase (gene COQ2); and protohaem IX farnesyltransferase (haem O synthase) from yeast and mammals(gene COX10), and from bacteria (genes cyoE or ctaB) [, ]

Probab=89.97  E-value=3.7  Score=38.05  Aligned_cols=50  Identities=24%  Similarity=0.303  Sum_probs=31.5

Q ss_pred             hCCCCHHHHHH-HHHHHHHHHHHHHHhhccChHhhHHC-CCcccceecChhh
Q 017282          246 FGTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAM-GLQSLPVAFGPET  295 (374)
Q Consensus       246 ~g~~~~~~~ll-~~~~~l~~~~~~~~~d~~D~e~D~~a-G~~TLpv~~G~~~  295 (374)
                      .+..++..+.. .+..++...+....||+.|.|.|+.. +++.-|..-|+-+
T Consensus        17 ~~~~~~~~~~~~~l~~~~~~~~~~~~Nd~~D~~~D~~~~~~~~rPl~~g~i~   68 (257)
T PF01040_consen   17 GGPFNWPIFLLGLLAVFLLQLAVYLLNDYFDYEEDRIHPNKPNRPLPSGRIS   68 (257)
T ss_pred             cCCCCHHHHHHHHHHHHHHHHHHHHhhChhhhhcCcccccccCcchhHHHHh
Confidence            34455544333 23334556677889999999999996 4555566555444

These are integral membrane proteins, which probably contain seven transmembrane segments. The signature is also found in cytochrome C oxidase assembly factor. The complexity of cytochrome C oxidase requires assistance in building the complex, and this is carried out by the cytochrome C oxidase assembly factor.; GO: 0004659 prenyltransferase activity, 0016021 integral to membrane

>PRK07566 bacteriochlorophyll/chlorophyll a synthase; Reviewed

Probab=89.72  E-value=3.3  Score=40.50  Aligned_cols=30  Identities=20%  Similarity=0.121  Sum_probs=21.0

Q ss_pred             HHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          263 AGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       263 ~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      ...+...+||+-|.|.|++.+ ++=|+.-|.
T Consensus        77 ~~~~~~~~Nd~~D~~~D~~~~-~~Rpl~sG~  106 (314)
T PRK07566         77 LCGTSQTLNDYFDREVDAINE-PYRPIPSGA  106 (314)
T ss_pred             HHHHHHHHhhhhccCccccCC-CCCCCCCce
Confidence            345567999999999998764 444554443

>PRK12848 ubiA 4-hydroxybenzoate octaprenyltransferase; Reviewed

Probab=89.65  E-value=7.2  Score=37.47  Aligned_cols=34  Identities=18%  Similarity=0.241  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282          261 SIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE  294 (374)
Q Consensus       261 ~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~  294 (374)
                      ++...+-..+||+-|+|-|++..+ +.=|..-|+=
T Consensus        52 ~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~i   86 (282)
T PRK12848         52 FLMRAAGCVINDYADRDFDGHVKRTKNRPLASGAV   86 (282)
T ss_pred             HHHHHHHHHHHhhHHhccCCCCCCCCCCCCCCCCc
Confidence            344556689999999999986554 2445555653

>PRK05951 ubiA prenyltransferase; Reviewed

Probab=89.39  E-value=7  Score=37.88  Aligned_cols=38  Identities=24%  Similarity=0.300  Sum_probs=25.3

Q ss_pred             hCCCCHHHHHHH-HHHHHHHHHHHHHhhccChHhhHHCC
Q 017282          246 FGTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMG  283 (374)
Q Consensus       246 ~g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~D~~aG  283 (374)
                      .|++++...+++ +...+...+....||+-|.|.|+...
T Consensus        34 ~~~f~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~g~D~~   72 (296)
T PRK05951         34 FRSFDPLLGALMLLGYFLLHASLNVFNDYKDYVLDCDHH   72 (296)
T ss_pred             cCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCccc
Confidence            467777655443 33445566778999999976666654

>PRK12847 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=89.32  E-value=6.3  Score=37.86  Aligned_cols=36  Identities=19%  Similarity=0.209  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHhhccChHhhHHCCC-cccceecChhh
Q 017282          260 YSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPET  295 (374)
Q Consensus       260 ~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~~  295 (374)
                      .++...+-...||+-|+|-|++..+ ++=|+.-|+-.
T Consensus        54 ~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~is   90 (285)
T PRK12847         54 SVLMRSAGCIINDIFDRKIDKHVARTKNRPLASGALS   90 (285)
T ss_pred             HHHHHHHHHHHHhHHHhhhccCCCcccCCCCCCCCcC
Confidence            3445566789999999999987654 35566666533

>PRK13591 ubiA prenyltransferase; Provisional

Probab=89.22  E-value=1.2  Score=43.41  Aligned_cols=72  Identities=25%  Similarity=0.324  Sum_probs=39.5

Q ss_pred             hhhcccccccccccC-CCCCccccccCHHHHHHHHHHHHHHHH---HHHHHHHHhhccchhHHHHHH-HHHHHhheecCC
Q 017282          140 TINDWYDREIDAINE-PYRPIPSGAISENEVITQIWVLLLAGL---GLAGLLDVWAGHDFPTIFWLA-VGGSLLSYIYSA  214 (374)
Q Consensus       140 ~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~l~~l~l---~l~~~l~~~~g~~~~~~~~l~-l~~~~l~~~Ys~  214 (374)
                      .+||+-|.|.|++++ +.=|+.=|   ++.+..+...+.+++.   +++..+++..  ..|.+.+.+ +.+.++.+.|+.
T Consensus       197 iindirDiEGDr~~G~kTLPV~lG---~~~A~~l~~~l~~~~~l~li~~~~~g~l~--~~~~~~~~s~~~~l~~~~~~~~  271 (307)
T PRK13591        197 CVYDFKDVKGDTLAGIKTLPVSLG---EQKTRNLLLGIHLFSHLVLGIALIFGVIA--FEPIILLYSFVCGLICIQVYSS  271 (307)
T ss_pred             HHHHhhhhHhHHHcCCeeEEEEEC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhc--cCchhhHHHHHHHHHHHHHHcC
Confidence            689999999999987 55566555   3344443333333222   2222232221  134333333 345556788997


Q ss_pred             CC
Q 017282          215 PP  216 (374)
Q Consensus       215 pP  216 (374)
                      |+
T Consensus       272 ~~  273 (307)
T PRK13591        272 PF  273 (307)
T ss_pred             Cc
Confidence            65

>PRK09573 (S)-2,3-di-O-geranylgeranylglyceryl phosphate synthase; Reviewed

Probab=89.22  E-value=21  Score=34.11  Aligned_cols=35  Identities=23%  Similarity=0.332  Sum_probs=25.2

Q ss_pred             HHHHHHHHHHHHHhhccChHhhHHCCCcccceecCh
Q 017282          258 LLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFGP  293 (374)
Q Consensus       258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G~  293 (374)
                      +..++...+-..+||+-|+|.|+++. +.=|..-|+
T Consensus        44 l~~~l~~~~~~~iNd~~D~~iD~~~~-~~Rpl~sG~   78 (279)
T PRK09573         44 LVVFLVCAGGNVINDIYDIEIDKINK-PERPIPSGR   78 (279)
T ss_pred             HHHHHHHHHHHHHHhhcccccccccC-CCCCcCCCc
Confidence            34445566778999999999999764 555665554

>TIGR01473 cyoE_ctaB protoheme IX farnesyltransferase

Probab=88.83  E-value=6.5  Score=37.67  Aligned_cols=36  Identities=19%  Similarity=0.224  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          258 LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       258 ~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      +..++...+-..+||+-|+|-|++..+ +.=|+.-|+
T Consensus        42 ~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~Rpl~sG~   78 (280)
T TIGR01473        42 LGTTLAAASANAFNMYIDRDIDKKMKRTRNRPLVTGR   78 (280)
T ss_pred             HHHHHHHHHHHHHHhhcccCcCCCCCCCCCCCCCCCC
Confidence            344455566789999999999997543 334554453

This model describes protoheme IX farnesyltransferase, also called heme O synthase, an enzyme that creates an intermediate in the biosynthesis of heme A. Prior to the description of its enzymatic function, this protein was often called a cytochrome o ubiquinol oxidase assembly factor.

>PRK12874 ubiA prenyltransferase; Reviewed

Probab=88.75  E-value=4  Score=39.57  Aligned_cols=33  Identities=15%  Similarity=-0.007  Sum_probs=26.1

Q ss_pred             HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (374)
Q Consensus       131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~  163 (374)
                      ..+.+.+-..+|++.|+|.|++.+ |.=|+.-|.
T Consensus       176 ~~~w~~~~~~~~a~~D~~~D~~~Gi~slpv~~G~  209 (291)
T PRK12874        176 VMFWVAGFDLLYSLQDMEFDKKRGLHSIPSKFGE  209 (291)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHcCCCcccHHhhh
Confidence            345677778899999999998877 777876664

>PRK12887 ubiA tocopherol phytyltransferase; Reviewed

Probab=88.58  E-value=10  Score=37.07  Aligned_cols=24  Identities=33%  Similarity=0.466  Sum_probs=19.4

Q ss_pred             HhhccChHhhHHCCCcccceecChh
Q 017282          270 VNDFKSVEGDRAMGLQSLPVAFGPE  294 (374)
Q Consensus       270 ~~d~~D~e~D~~aG~~TLpv~~G~~  294 (374)
                      +||+.|+|-|+. ++++.|+.-|+-
T Consensus        72 iNd~~D~~iD~i-nkp~rPiasG~l   95 (308)
T PRK12887         72 LNQLTDIEIDRI-NKPHLPLAAGEF   95 (308)
T ss_pred             HhhhhhHHHHhc-CCCCCCcCCccc
Confidence            999999999985 468888766653

>PRK04375 protoheme IX farnesyltransferase; Provisional

Probab=88.42  E-value=6.8  Score=37.94  Aligned_cols=35  Identities=14%  Similarity=0.193  Sum_probs=23.4

Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      ..++...+-..+||+.|+|-|+++.+ +.=|+.-|+
T Consensus        52 ~~~l~~aa~~~iNd~~D~~iD~~~~Rt~~Rpl~sG~   87 (296)
T PRK04375         52 GIALVAGAAGALNNYIDRDIDAKMERTKNRPLVTGR   87 (296)
T ss_pred             HHHHHHHHHHHHHhHHhhccCCCCCccCCCCCCCCC
Confidence            33445556689999999999998643 334444454

>PRK12878 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.38  E-value=13  Score=36.32  Aligned_cols=35  Identities=17%  Similarity=0.011  Sum_probs=22.8

Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCCCc-ccceecCh
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGP  293 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~  293 (374)
                      ..++...+-...||+-|+|-|++..+. .=|..-|+
T Consensus        80 ~~~l~~~a~~~~Nd~~Dr~iD~~~~Rt~~RPl~sG~  115 (314)
T PRK12878         80 GAIAMRGAGCTYNDIVDRDIDAKVARTRSRPLPSGQ  115 (314)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCCCCCCCCCCCCC
Confidence            334455566899999999999875431 23444454

>TIGR01475 ubiA_other putative 4-hydroxybenzoate polyprenyltransferase

Probab=88.36  E-value=12  Score=35.83  Aligned_cols=47  Identities=13%  Similarity=0.043  Sum_probs=29.2

Q ss_pred             CCCCHHHH-HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          247 GTLTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       247 g~~~~~~~-ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      +..++... +..+..++...+-...||+.|+|.|+++.+ +.=|+.-|+
T Consensus        31 ~~~~~~~~~l~~l~~~l~~~a~~~~Nd~~D~~~D~~~~Rt~~RPl~sG~   79 (282)
T TIGR01475        31 GLPGLKTLILILIAAVSARTAAMAFNRIIDRAIDARNPRTKNRPLVSGL   79 (282)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccCCCCCCCCC
Confidence            44455333 333444556677789999999999998732 233554443

A fairly deep split separates this polyprenyltransferase subfamily from the set of mitochondrial and proteobacterial 4-hydroxybenzoate polyprenyltransferases, described in TIGR01474. Protoheme IX farnesyltransferase (heme O synthase) (TIGR01473) is more distantly related. Because no species appears to have both this protein and a member of TIGR01474, it is likely that This model represents 4-hydroxybenzoate polyprenyltransferase, a critical enzyme of ubiquinone biosynthesis, in the Archaea, Gram-positive bacteria, Aquifex aeolicus, the Chlamydias, etc.

>PRK13592 ubiA prenyltransferase; Provisional

Probab=88.25  E-value=17  Score=35.37  Aligned_cols=50  Identities=18%  Similarity=0.093  Sum_probs=32.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHhhccChHhhHHCCCcccceecC---hhhHHHHHHH
Q 017282          252 DIIVLTLLYSIAGLGIAIVNDFKSVEGDRAMGLQSLPVAFG---PETAKWICVG  302 (374)
Q Consensus       252 ~~~ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~~TLpv~~G---~~~a~~l~~~  302 (374)
                      +.++.++..++.+.+-..+||+.|+|-|+.. ++.=|+-=|   .+.++.....
T Consensus        47 ~~~l~~~~vf~~~~~gniiNDy~D~EIDrIN-~P~RPLPsG~VS~~~A~~~si~   99 (299)
T PRK13592         47 QEFVGVFTVFGFWMILRIADDFKDYETDRRL-FPHRALPSGRVKKKDLAIALSF   99 (299)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHhhHHHhhhc-CCCCCCCcCCCCHHHHHHHHHH
Confidence            3444444455666677899999999999654 666666555   4445544433

>PRK12870 ubiA 4-hydroxybenzoate polyprenyltransferase; Reviewed

Probab=88.10  E-value=8.4  Score=37.26  Aligned_cols=48  Identities=17%  Similarity=0.054  Sum_probs=28.9

Q ss_pred             CCCCHHHHHH-HHHHHHHHHHHHHHhhccChHhhHHCCCc-ccceecChh
Q 017282          247 GTLTPDIIVL-TLLYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGPE  294 (374)
Q Consensus       247 g~~~~~~~ll-~~~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~~  294 (374)
                      +..++..+++ .+..++...+-..+||+-|+|-|++..+. .=|..-|+-
T Consensus        41 ~~~~~~~~~l~~lg~~~~~~a~~~~Nd~~D~~iD~~~~Rt~~RPL~sG~i   90 (290)
T PRK12870         41 GLPPLPLVGIIILGALATSAAGCVVNDLWDRDIDPQVERTRFRPLASRRL   90 (290)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhHHHhccCCCCCcccCCCCCCCCc
Confidence            3344433333 23334455566889999999999875543 456555653

>PRK08238 hypothetical protein; Validated

Probab=87.99  E-value=10  Score=39.49  Aligned_cols=36  Identities=31%  Similarity=0.437  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCC-CcccceecChh
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMG-LQSLPVAFGPE  294 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG-~~TLpv~~G~~  294 (374)
                      ..++...+..++||+-|+|.|+++- +|.=|..-|+=
T Consensus       234 ~~~l~~sa~~~~ND~~D~e~Dr~~~rk~~RPlasG~i  270 (479)
T PRK08238        234 AFSLCASAVYILNDLLDLEADRAHPRKRRRPFASGAL  270 (479)
T ss_pred             HHHHHHHHHHHHHhhHHhhhhccCCCCCCCCCCCCCC
Confidence            3445556778999999999999974 34456655543

>PRK13362 protoheme IX farnesyltransferase; Provisional

Probab=87.90  E-value=28  Score=33.97  Aligned_cols=48  Identities=15%  Similarity=0.141  Sum_probs=29.9

Q ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282          247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE  294 (374)
Q Consensus       247 g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~  294 (374)
                      ++.++..++.. +..++...+-...||+.|+|-|++..+ +.=|+.-|+=
T Consensus        42 ~~~~~~~~~~~~lg~~l~~aaa~~~Nd~~D~~iD~~~~Rt~~RPlpsG~i   91 (306)
T PRK13362         42 GHVDPVLMLAAVIGLSLVVASGCALNNCIDRDIDAKMQRTRNRVTVTGEI   91 (306)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhChHHhCcCCCCCCCCCCCCCCCCC
Confidence            44555433322 234455567789999999999998755 3445555653

>TIGR01476 chlor_syn_BchG bacteriochlorophyll/chlorophyll synthetase

Probab=87.85  E-value=6.7  Score=37.62  Aligned_cols=39  Identities=18%  Similarity=0.017  Sum_probs=26.1

Q ss_pred             HHHHHhhhhcccccccccccC-CCCCccccccCHHHHHHHHHH
Q 017282          134 LTGYTQTINDWYDREIDAINE-PYRPIPSGAISENEVITQIWV  175 (374)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~is~~~a~~~~~~  175 (374)
                      ...+....||+-|.|.|++++ +.=|..-|   .+.+..+...
T Consensus       173 ~~~~i~~~nd~~D~~~D~~~G~~Tl~v~lG---~~~a~~l~~~  212 (283)
T TIGR01476       173 GAHGIMTLNDFKSVEGDRQLGLRSLPVMIG---VKRAAIVAVT  212 (283)
T ss_pred             HHHHHHHHHhccchhhHHHcCCcCcceEEc---HHHHHHHHHH
Confidence            344567899999999999876 55566555   3444443333

This model describes a subfamily of a large family of polyprenyltransferases (pfam01040) that also includes 4-hydroxybenzoate octaprenyltransferase and protoheme IX farnesyltransferase (heme O synthase). Members of this family are found exclusively in photosynthetic organisms, including a single copy in Arabidopsis thaliana.

>COG1575 MenA 1,4-dihydroxy-2-naphthoate octaprenyltransferase [Coenzyme metabolism]

Probab=87.64  E-value=7.1  Score=38.03  Aligned_cols=27  Identities=26%  Similarity=0.144  Sum_probs=21.7

Q ss_pred             HHHHHhhhhcccccccccccCCCCCcc
Q 017282          134 LTGYTQTINDWYDREIDAINEPYRPIP  160 (374)
Q Consensus       134 ~~~a~~~iNd~~D~~~D~~n~~~Rpl~  160 (374)
                      ..+..+..|+..|.|+|++|+|+-+.+
T Consensus       188 l~~~Il~aNNirDie~D~~~gk~TLav  214 (303)
T COG1575         188 LIANILLANNLRDIEEDIRNGKYTLAV  214 (303)
T ss_pred             HHHHHHHhcccccchhHHhcCCcceee
Confidence            455678899999999999999765443

>PLN02776 prenyltransferase

Probab=86.94  E-value=14  Score=36.75  Aligned_cols=46  Identities=13%  Similarity=0.042  Sum_probs=29.4

Q ss_pred             CCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecChh
Q 017282          249 LTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGPE  294 (374)
Q Consensus       249 ~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~~  294 (374)
                      .++..++ ..+..++...+-..+||+-|+|-|+++.+ +.=|..-|+=
T Consensus        26 ~~~~~l~~~~lg~~l~~aaa~~~N~i~DrdiD~~m~RT~~RPLpsGri   73 (341)
T PLN02776         26 IDLPGLGWTCAGTMLCAASANTLNQVFEVKNDSKMKRTMRRPLPSGRI   73 (341)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHHhHHhhhhcccCCCCCCCCCCCCCC
Confidence            4443333 33344455566689999999999998765 4556655653

>PRK12895 ubiA prenyltransferase; Reviewed

Probab=86.51  E-value=20  Score=34.75  Aligned_cols=35  Identities=11%  Similarity=0.012  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHhhccChHhhHHCCCc-ccceecCh
Q 017282          259 LYSIAGLGIAIVNDFKSVEGDRAMGLQ-SLPVAFGP  293 (374)
Q Consensus       259 ~~~l~~~~~~~~~d~~D~e~D~~aG~~-TLpv~~G~  293 (374)
                      ..++...+-..+||+-|+|-|+++-+. .=|..-|+
T Consensus        45 ~~~~~rsag~~~Ndi~Dr~iD~~~~RT~~RPLpsG~   80 (286)
T PRK12895         45 AAVSARTSAMSINRIEGLRYDMINPRKKDWALVSGR   80 (286)
T ss_pred             HHHHHHHHHHHHHhHHHhcccCCCCcCCCCCCCCCC
Confidence            334444556789999999999887432 33444443

>PRK13106 ubiA prenyltransferase; Reviewed

Probab=86.42  E-value=19  Score=35.16  Aligned_cols=47  Identities=13%  Similarity=0.123  Sum_probs=28.5

Q ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          247 GTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       247 g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      |..++..++ ..+..++...+-..+||+-|+|-|+++-+ +.=|..-|+
T Consensus        44 ~~~~~~~l~l~~lg~~l~~~a~~~~Nd~~D~diD~~~~RT~~RPl~sG~   92 (300)
T PRK13106         44 GIPPISTLILIFLALFFLRTAGMTNDNLADLEIDAKNPRTKNRPLVTGA   92 (300)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHHhhHHhccccCCCccCCCCCCCCC
Confidence            334443332 33344455556678999999999998742 334555564

>PRK12869 ubiA protoheme IX farnesyltransferase; Reviewed

Probab=86.05  E-value=23  Score=33.89  Aligned_cols=45  Identities=20%  Similarity=0.096  Sum_probs=28.1

Q ss_pred             CCHHHH-HHHHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          249 LTPDII-VLTLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       249 ~~~~~~-ll~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      .++..+ +..+..++...+-...||+-|+|-|+++.+ +.=|..-|+
T Consensus        33 ~~~~~~~l~~~~~~l~~~a~~~~Nd~~D~~iD~~~~Rt~~RPl~sG~   79 (279)
T PRK12869         33 VSWLPLIPLLIGGTLASGGSAAFNHGIERDIDKVMSRTSKRPTPVGL   79 (279)
T ss_pred             CCHHHHHHHHHHHHHHHHHHHHHhchHhcCCCCCCCCCCCCCcCCCC
Confidence            444333 233344455666789999999999998654 334444444

>PRK12886 ubiA prenyltransferase; Reviewed

Probab=85.98  E-value=7.4  Score=37.67  Aligned_cols=33  Identities=15%  Similarity=0.011  Sum_probs=24.8

Q ss_pred             HHHHHHHHhhhhcccccccccccC-CCCCccccc
Q 017282          131 GPCLTGYTQTINDWYDREIDAINE-PYRPIPSGA  163 (374)
Q Consensus       131 g~l~~~a~~~iNd~~D~~~D~~n~-~~Rpl~sG~  163 (374)
                      ..+.+.+-..+|++.|+|.|++.+ |.=|+.-|.
T Consensus       171 ~~lw~~~~~~~~a~~D~e~D~~aGi~slpv~~G~  204 (291)
T PRK12886        171 VLFWVAGFDILYALQDLEFDRKEGLHSIPAKLGV  204 (291)
T ss_pred             HHHHHHHHHHHHHhccHHhHHHcCCcCcchhcCc
Confidence            334466666789999999999877 777877664

>PRK12876 ubiA prenyltransferase; Reviewed

Probab=85.68  E-value=9.4  Score=37.27  Aligned_cols=37  Identities=16%  Similarity=-0.077  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHhhccChHhhHHCCC-cccceecCh
Q 017282          257 TLLYSIAGLGIAIVNDFKSVEGDRAMGL-QSLPVAFGP  293 (374)
Q Consensus       257 ~~~~~l~~~~~~~~~d~~D~e~D~~aG~-~TLpv~~G~  293 (374)
                      .+.+++.-.+-...||+-|+|-|+++-+ +.=|..-|+
T Consensus        53 ~~a~~~~Rsag~~~Nd~~DrdiD~~~~RT~~RPLpsG~   90 (300)
T PRK12876         53 GSAFFCARTVGIIVNQIIDCAIDKKNPRTSSRVLPAKL   90 (300)
T ss_pred             HHHHHHHHHHHHHHHhHHHhcccCCCCCCCCCCCCCCC
Confidence            3334444445578999999999998875 455665565

>TIGR02235 menA_cyano-plnt 1,4-dihydroxy-2-naphthoate phytyltransferase

Probab=85.29  E-value=18  Score=35.02  Aligned_cols=35  Identities=26%  Similarity=0.188  Sum_probs=24.3

Q ss_pred             hCCCCHHHHHHHH-HHHHHHHHHHHHhhccChHh--hH
Q 017282          246 FGTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEG--DR  280 (374)
Q Consensus       246 ~g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e~--D~  280 (374)
                      .|++++...++++ ...+...+.+..||+.|.+.  |+
T Consensus        29 ~~~f~~~~~ll~li~~l~~q~~~N~~Ndy~D~~~G~D~   66 (285)
T TIGR02235        29 GGVFHLDRFALFLIAAILILAWINLTNDVFDSDTGIDR   66 (285)
T ss_pred             CCCcCHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence            3578877665543 33456677899999999776  65

This family of phytyltransferases, found in plants and cyanobacteria, are involved in the biosythesis of phylloquinone (Vitamin K1). Phylloquinone is a critical component of photosystem I. The closely related MenA enzyme from bacteria transfers a prenyl group (which only differs in the saturation of the isoprenyl groups) in the biosynthesis of menaquinone. Activity towards both substrates in certain organisms should be considered a possibility.

>PRK12871 ubiA prenyltransferase; Reviewed

Probab=84.24  E-value=20  Score=34.84  Aligned_cols=35  Identities=17%  Similarity=0.221  Sum_probs=19.8

Q ss_pred             CCCCHHHHH-HHHHHHHHHHHHHHHhhccChHhhHH
Q 017282          247 GTLTPDIIV-LTLLYSIAGLGIAIVNDFKSVEGDRA  281 (374)
Q Consensus       247 g~~~~~~~l-l~~~~~l~~~~~~~~~d~~D~e~D~~  281 (374)
                      |..++...+ .++...+..-+-..+||+-|+|-|+.
T Consensus        36 g~~~~~~~~l~~l~~~l~~~ag~~iND~~D~~~D~~   71 (297)
T PRK12871         36 GGFSWELTIKAALIGLFGFEAGFVLNDYVDRKRDRL   71 (297)
T ss_pred             CCCCHHHHHHHHHHHHHHHHHHHHHhhHHHHhcCcc
Confidence            555664333 22222222222359999999999964

>PRK13105 ubiA prenyltransferase; Reviewed

Probab=83.53  E-value=29  Score=33.53  Aligned_cols=20  Identities=20%  Similarity=-0.016  Sum_probs=14.9

Q ss_pred             HHhhccChHhhHHCCCcccc
Q 017282          269 IVNDFKSVEGDRAMGLQSLP  288 (374)
Q Consensus       269 ~~~d~~D~e~D~~aG~~TLp  288 (374)
                      -+||+-|.|.|....++.=+
T Consensus        52 ~~Ndy~D~~~d~dn~r~~g~   71 (282)
T PRK13105         52 GINDVFDYESDLRNPRKGGV   71 (282)
T ss_pred             hhhhhhhhhcCCCCcccCCC
Confidence            44999999998887665444

>PRK06080 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Validated

Probab=82.67  E-value=21  Score=34.26  Aligned_cols=32  Identities=19%  Similarity=0.367  Sum_probs=20.0

Q ss_pred             CCCCHHHHHHH-HHHHHHHHHHHHHhhccChHh
Q 017282          247 GTLTPDIIVLT-LLYSIAGLGIAIVNDFKSVEG  278 (374)
Q Consensus       247 g~~~~~~~ll~-~~~~l~~~~~~~~~d~~D~e~  278 (374)
                      +.+++...+++ +...+...+....||+-|.|.
T Consensus        33 ~~~~~~~~ll~~l~~~l~~~~~n~~Ndy~D~~~   65 (293)
T PRK06080         33 GSFHPLLALLALLAALLLQIATNLANDYGDYVK   65 (293)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhHHHhcc
Confidence            55665444333 334455567789999999853

>PRK07419 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=82.58  E-value=19  Score=35.13  Aligned_cols=35  Identities=17%  Similarity=0.104  Sum_probs=23.7

Q ss_pred             CCCCHHHHHHHH-HHHHHHHHHHHHhhccChH--hhHH
Q 017282          247 GTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVE--GDRA  281 (374)
Q Consensus       247 g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e--~D~~  281 (374)
                      +++++...++++ ...+...+.+..||+.|.+  -|++
T Consensus        43 ~~f~~~~~ll~ll~~~l~q~~~N~~NDy~D~~~G~D~~   80 (304)
T PRK07419         43 GVFRLDQFITFLLAAILILAWENLSNDVFDADTGIDKN   80 (304)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence            567776655443 3445667789999999988  4553

>PRK13387 1,4-dihydroxy-2-naphthoate octaprenyltransferase; Provisional

Probab=82.19  E-value=24  Score=34.57  Aligned_cols=37  Identities=3%  Similarity=0.012  Sum_probs=24.6

Q ss_pred             hCCCCHHHHHHHHHH-HHHHHHHHHHhhccChHhhHHC
Q 017282          246 FGTLTPDIIVLTLLY-SIAGLGIAIVNDFKSVEGDRAM  282 (374)
Q Consensus       246 ~g~~~~~~~ll~~~~-~l~~~~~~~~~d~~D~e~D~~a  282 (374)
                      .+++++...++++.. .+...+....||+.|.+.|...
T Consensus        33 ~~~~~~~~~ll~ll~~~~~~~~~N~~NDy~D~~~g~D~   70 (317)
T PRK13387         33 AKIFDWLLFLAFMVAMLAFDIATTAINNYMDFKKALDT   70 (317)
T ss_pred             CCCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhcCCCc
Confidence            346777655544433 4466778999999998776554

>TIGR00751 menA 1,4-dihydroxy-2-naphthoate octaprenyltransferase

Probab=81.41  E-value=28  Score=33.60  Aligned_cols=32  Identities=13%  Similarity=0.029  Sum_probs=22.1

Q ss_pred             CCCCHHHHHHHH-HHHHHHHHHHHHhhccChHh
Q 017282          247 GTLTPDIIVLTL-LYSIAGLGIAIVNDFKSVEG  278 (374)
Q Consensus       247 g~~~~~~~ll~~-~~~l~~~~~~~~~d~~D~e~  278 (374)
                      +.+++...++++ ...+...+....||+-|.+.
T Consensus        23 ~~f~~~~~ll~~~~~~~~q~~~N~~NDy~D~~~   55 (284)
T TIGR00751        23 HAFVWLVALLALATAVLLQILSNYANDYGDGIK   55 (284)
T ss_pred             CCccHHHHHHHHHHHHHHHHHHHHHHhHHHHhc
Confidence            467776555444 33456677899999999844

This membrane-associated enzyme converts 1,4-dihydroxy-2-naphthoic acid (DHNA) to demethylmenaquinone, a step in menaquinone biosynthesis.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	374
1qzv_F	154	Plant photosystem I: subunit PSAF; photosynthesis,	2e-04

>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant photosynthetic reaction center, peripheral antenna; HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1 Length = 154

 Score = 40.3 bits (93), Expect = 2e-04
 Identities = 12/43 (27%), Positives = 15/43 (34%), Gaps = 18/43 (41%)

Query: 38 RRLTVRAQEPNANEVKPQAPDKAPAASGSSFNQLLGIKGAAQE 80
          ++L           +K  A D APA         L IK A  E
Sbjct: 23 KKLQ--------ASLKLYADDSAPA---------LAIK-ATME 47

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00