Citrus Sinensis ID: 017293

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370----
MALDSVSTDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKTA
ccccccccccccEEEEEEEccEEEEEEccccccEEEEEEEccHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEccccccccccccccHHHHHHHHHHcccccEEEEcccccccHHHHHHHHHHccccccEEEEcccHHHHHHHcccccEEEEccccccccccccccccHHHHHHHcccccccEEEEcccccccccccccccccccccccccccccccccccEEccccccccccccccccccccEEEEEccccEEcccccccHHHHHHHHHHcc
cccHccccccccEEEEEEEccEEEEEEccccccEEEEEEEccHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHccccccccEEEEEcccHHHHHccHHHHHHHHHHHHHcccEEEEEEcccccHHHcHHHHHHHHHHccccEEEEEcHHHHHHHHcccccEEEEcccHHHccccHHHHHHHHHHHHHHHHccccEEEEccccEEEccccccccccEEEccHHHHEEcccccccEEcccccEEEccccccccHHHHHHHHHcccccccccHHHHHHHHHHHHHccc
maldsvstdnnslQSICYRrgslqlldqrklPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYlvssrptavnLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNqlknskfsvlthcntgslatagyGTALGVIRALHSegvleraycsetrpfnqgsrlTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGAdrvaangdtankiGTYSLALCAKFHNILFyvaapltsidltlssgqEIVIEERSAKELlcsrgglgeQVAASgisvwnpafdvtpanlitgiitekqgvvtkagaddafdIKDFIQKTA
maldsvstdnnslqsicyrrgslqlldqrKLPLETIYLEirdsadgwSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGiitekqgvvtkagaddafdiKDFIQKTA
MALDSVSTDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGapaiamaaalslaVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPatliadsaaaaLMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKTA
**************SICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFI****
**********NSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAA**SEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQ***
***********SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKTA
*********NNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKT*
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ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
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MALDSVSTDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKTA
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query374 2.2.26 [Sep-21-2011]
B9HCR2384 Methylthioribose-1-phosph yes no 0.965 0.940 0.815 1e-170
B9RR88382 Methylthioribose-1-phosph N/A no 0.970 0.950 0.827 1e-168
Q948X8374 Methylthioribose-1-phosph N/A no 0.970 0.970 0.797 1e-161
D7TCD0376 Methylthioribose-1-phosph yes no 0.975 0.970 0.802 1e-159
Q9ZUG4374 Methylthioribose-1-phosph yes no 0.965 0.965 0.774 1e-158
B6TZD1367 Methylthioribose-1-phosph N/A no 0.959 0.978 0.767 1e-151
A2ZCP0374 Methylthioribose-1-phosph N/A no 0.959 0.959 0.745 1e-149
Q9AYT7367 Methylthioribose-1-phosph N/A no 0.965 0.983 0.752 1e-149
Q0ITU1374 Methylthioribose-1-phosph yes no 0.959 0.959 0.745 1e-149
A6R364391 Methylthioribose-1-phosph N/A no 0.930 0.890 0.570 1e-108
>sp|B9HCR2|MTNA_POPTR Methylthioribose-1-phosphate isomerase OS=Populus trichocarpa GN=POPTRDRAFT_832064 PE=3 SV=1 Back     alignment and function desciption
 Score =  597 bits (1540), Expect = e-170,   Method: Compositional matrix adjust.
 Identities = 297/364 (81%), Positives = 330/364 (90%), Gaps = 3/364 (0%)

Query: 10  NNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSL 69
           +N+LQSICY RGSL+LLDQRKLPLET YL+I+D++DGW AIREMVVRGAPAIA++AALSL
Sbjct: 12  DNTLQSICYHRGSLKLLDQRKLPLETTYLDIKDASDGWLAIREMVVRGAPAIAISAALSL 71

Query: 70  AVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEAN 129
           AVEV NL  F+GT  +AASFL  KL+YLVSSRPTAVNLSDAA KLKE++SKAAA AS   
Sbjct: 72  AVEVSNLENFNGTPVEAASFLAGKLDYLVSSRPTAVNLSDAATKLKEVVSKAAAAASNCQ 131

Query: 130 SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN-SKFSVLTHCNTGSLATAGYGT 188
           SVFQAYIEAAEIML DDVA+NKAIGSYGA F+QNQ K+ +K SVLTHCNTGSLATAGYGT
Sbjct: 132 SVFQAYIEAAEIMLADDVASNKAIGSYGARFIQNQQKDPTKLSVLTHCNTGSLATAGYGT 191

Query: 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248
           ALGVIRALH EGVL+RAYC+ETRPFNQGSRLTAFELVH++IPATLIADSAAAALMKD +V
Sbjct: 192 ALGVIRALHGEGVLQRAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKDSKV 251

Query: 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEER 308
           SAV+VGADRVAANGDTANKIGTYSLALCA  HNI FYVAAPLTS D +LSSG+EI+IEER
Sbjct: 252 SAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSFDSSLSSGKEIIIEER 311

Query: 309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKD 368
           S KE+L +RGGLGEQVAASGISVWNPAFDVTPA+LI+GIITEK GV+TK G DD FDIKD
Sbjct: 312 SPKEMLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEK-GVITKTGMDD-FDIKD 369

Query: 369 FIQK 372
           FI +
Sbjct: 370 FINR 373
Catalyzes the interconversion of methylthioribose-1-phosphate (MTR-1-P) into methylthioribulose-1-phosphate (MTRu-1-P).
Populus trichocarpa (taxid: 3694)
EC: 5EC: .EC: 3EC: .EC: 1EC: .EC: 2EC: 3
>sp|B9RR88|MTNA_RICCO Methylthioribose-1-phosphate isomerase OS=Ricinus communis GN=RCOM_0711420 PE=2 SV=1 Back     alignment and function description
>sp|Q948X8|MTNA_TOBAC Methylthioribose-1-phosphate isomerase OS=Nicotiana tabacum GN=CIG2 PE=2 SV=1 Back     alignment and function description
>sp|D7TCD0|MTNA_VITVI Methylthioribose-1-phosphate isomerase OS=Vitis vinifera GN=VIT_11s0016g00830 PE=2 SV=2 Back     alignment and function description
>sp|Q9ZUG4|MTNA_ARATH Methylthioribose-1-phosphate isomerase OS=Arabidopsis thaliana GN=At2g05830 PE=2 SV=2 Back     alignment and function description
>sp|B6TZD1|MTNA_MAIZE Methylthioribose-1-phosphate isomerase OS=Zea mays GN=IDI2 PE=2 SV=1 Back     alignment and function description
>sp|A2ZCP0|MTNA_ORYSI Methylthioribose-1-phosphate isomerase OS=Oryza sativa subsp. indica GN=OsI_35550 PE=2 SV=1 Back     alignment and function description
>sp|Q9AYT7|MTNA_HORVU Methylthioribose-1-phosphate isomerase OS=Hordeum vulgare GN=IDI2 PE=2 SV=1 Back     alignment and function description
>sp|Q0ITU1|MTNA_ORYSJ Methylthioribose-1-phosphate isomerase OS=Oryza sativa subsp. japonica GN=IDI2 PE=2 SV=1 Back     alignment and function description
>sp|A6R364|MTNA_AJECN Methylthioribose-1-phosphate isomerase OS=Ajellomyces capsulata (strain NAm1 / WU24) GN=MRI1 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
224088736384 predicted protein [Populus trichocarpa] 0.965 0.940 0.815 1e-168
255550413382 Methylthioribose-1-phosphate isomerase, 0.970 0.950 0.827 1e-166
357450083382 Methylthioribose-1-phosphate isomerase [ 0.986 0.965 0.793 1e-163
21593194374 putative translation initiation factor e 0.965 0.965 0.771 1e-162
356530441370 PREDICTED: LOW QUALITY PROTEIN: methylth 0.986 0.997 0.788 1e-161
75164750374 RecName: Full=Methylthioribose-1-phospha 0.970 0.970 0.797 1e-159
297738543418 unnamed protein product [Vitis vinifera] 0.975 0.873 0.802 1e-158
225444690376 PREDICTED: methylthioribose-1-phosphate 0.975 0.970 0.802 1e-157
297831660369 eukaryotic translation initiation factor 0.973 0.986 0.773 1e-156
18396170374 NagB/RpiA/CoA transferase-like protein [ 0.965 0.965 0.774 1e-156
>gi|224088736|ref|XP_002308521.1| predicted protein [Populus trichocarpa] gi|313471349|sp|B9HCR2.1|MTNA_POPTR RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|222854497|gb|EEE92044.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  597 bits (1540), Expect = e-168,   Method: Compositional matrix adjust.
 Identities = 297/364 (81%), Positives = 330/364 (90%), Gaps = 3/364 (0%)

Query: 10  NNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSL 69
           +N+LQSICY RGSL+LLDQRKLPLET YL+I+D++DGW AIREMVVRGAPAIA++AALSL
Sbjct: 12  DNTLQSICYHRGSLKLLDQRKLPLETTYLDIKDASDGWLAIREMVVRGAPAIAISAALSL 71

Query: 70  AVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEAN 129
           AVEV NL  F+GT  +AASFL  KL+YLVSSRPTAVNLSDAA KLKE++SKAAA AS   
Sbjct: 72  AVEVSNLENFNGTPVEAASFLAGKLDYLVSSRPTAVNLSDAATKLKEVVSKAAAAASNCQ 131

Query: 130 SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN-SKFSVLTHCNTGSLATAGYGT 188
           SVFQAYIEAAEIML DDVA+NKAIGSYGA F+QNQ K+ +K SVLTHCNTGSLATAGYGT
Sbjct: 132 SVFQAYIEAAEIMLADDVASNKAIGSYGARFIQNQQKDPTKLSVLTHCNTGSLATAGYGT 191

Query: 189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRV 248
           ALGVIRALH EGVL+RAYC+ETRPFNQGSRLTAFELVH++IPATLIADSAAAALMKD +V
Sbjct: 192 ALGVIRALHGEGVLQRAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKDSKV 251

Query: 249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEER 308
           SAV+VGADRVAANGDTANKIGTYSLALCA  HNI FYVAAPLTS D +LSSG+EI+IEER
Sbjct: 252 SAVVVGADRVAANGDTANKIGTYSLALCAMHHNIPFYVAAPLTSFDSSLSSGKEIIIEER 311

Query: 309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKD 368
           S KE+L +RGGLGEQVAASGISVWNPAFDVTPA+LI+GIITEK GV+TK G DD FDIKD
Sbjct: 312 SPKEMLNARGGLGEQVAASGISVWNPAFDVTPASLISGIITEK-GVITKTGMDD-FDIKD 369

Query: 369 FIQK 372
           FI +
Sbjct: 370 FINR 373

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255550413|ref|XP_002516257.1| Methylthioribose-1-phosphate isomerase, putative [Ricinus communis] gi|313471351|sp|B9RR88.1|MTNA_RICCO RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|223544743|gb|EEF46259.1| Methylthioribose-1-phosphate isomerase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357450083|ref|XP_003595318.1| Methylthioribose-1-phosphate isomerase [Medicago truncatula] gi|355484366|gb|AES65569.1| Methylthioribose-1-phosphate isomerase [Medicago truncatula] Back     alignment and taxonomy information
>gi|21593194|gb|AAM65143.1| putative translation initiation factor eIF-2B alpha subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356530441|ref|XP_003533789.1| PREDICTED: LOW QUALITY PROTEIN: methylthioribose-1-phosphate isomerase-like [Glycine max] Back     alignment and taxonomy information
>gi|75164750|sp|Q948X8.1|MTNA_TOBAC RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|15216226|dbj|BAB63262.1| CIG2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|297738543|emb|CBI27788.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|225444690|ref|XP_002277806.1| PREDICTED: methylthioribose-1-phosphate isomerase [Vitis vinifera] gi|317412019|sp|D7TCD0.2|MTNA_VITVI RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein Back     alignment and taxonomy information
>gi|297831660|ref|XP_002883712.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] gi|297329552|gb|EFH59971.1| eukaryotic translation initiation factor 2B family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|18396170|ref|NP_027726.1| NagB/RpiA/CoA transferase-like protein [Arabidopsis thaliana] gi|75216779|sp|Q9ZUG4.2|MTNA_ARATH RecName: Full=Methylthioribose-1-phosphate isomerase; Short=M1Pi; Short=MTR-1-P isomerase; AltName: Full=S-methyl-5-thioribose-1-phosphate isomerase; AltName: Full=Translation initiation factor eIF-2B subunit alpha/beta/delta-like protein gi|20197503|gb|AAC95160.2| putative translation initiation factor eIF-2B alpha subunit [Arabidopsis thaliana] gi|330250881|gb|AEC05975.1| NagB/RpiA/CoA transferase-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query374
TAIR|locus:2064717374 AT2G05830 "AT2G05830" [Arabido 0.965 0.965 0.711 3.3e-134
UNIPROTKB|Q0ITU1374 IDI2 "Methylthioribose-1-phosp 0.959 0.959 0.684 4.2e-127
ASPGD|ASPL0000073543379 AN4290 [Emericella nidulans (t 0.946 0.934 0.510 4.3e-86
UNIPROTKB|Q5B590379 mri1 "Methylthioribose-1-phosp 0.946 0.934 0.510 4.3e-86
FB|FBgn0039849364 CG11334 [Drosophila melanogast 0.922 0.947 0.495 2.6e-79
ZFIN|ZDB-GENE-080204-109353 mri1 "methylthioribose-1-phosp 0.885 0.937 0.514 6.8e-79
UNIPROTKB|F1SD78358 MRI1 "Methylthioribose-1-phosp 0.895 0.935 0.501 4.3e-77
UNIPROTKB|Q9BV20369 MRI1 "Methylthioribose-1-phosp 0.895 0.907 0.507 7.1e-77
UNIPROTKB|E2R7C2368 MRI1 "Methylthioribose-1-phosp 0.938 0.953 0.472 8.1e-76
UNIPROTKB|J9P6Q4358 MRI1 "Methylthioribose-1-phosp 0.938 0.980 0.472 8.1e-76
TAIR|locus:2064717 AT2G05830 "AT2G05830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1315 (468.0 bits), Expect = 3.3e-134, P = 3.3e-134
 Identities = 259/364 (71%), Positives = 302/364 (82%)

Query:    10 NNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXX 69
             + +L++ICY+ GSLQLLDQRKLPLETIYLEIRD++DGWSAI+EMVVRG            
Sbjct:     6 DTTLKAICYKPGSLQLLDQRKLPLETIYLEIRDASDGWSAIQEMVVRGAPAIAIAAALSL 65

Query:    70 XVEVFNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEAN 129
              VEVFN + F G+A+DA +FL NKL+YLVSSRPTAVNL+DAA KLK +I+KA ATA+EA 
Sbjct:    66 AVEVFNFHGFDGSASDAVAFLENKLDYLVSSRPTAVNLADAALKLKHVIAKALATATEAK 125

Query:   130 SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKN-SKFSVLTHCNTGSLATAGYGT 188
             S+F+AYIEA+E ML+DDV +NKAIG++G S L+ Q KN  K SVLTHCNTGSLATAGYGT
Sbjct:   126 SIFKAYIEASEDMLEDDVVSNKAIGNFGLSLLRQQAKNPDKLSVLTHCNTGSLATAGYGT 185

Query:   189 ALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDGRV 248
             ALGVIRALH++G+LERAYC+ETRPFNQGSRLTAFELVH++IP           LMKDGRV
Sbjct:   186 ALGVIRALHTQGILERAYCTETRPFNQGSRLTAFELVHEKIPATLIADSAAAALMKDGRV 245

Query:   249 SAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEER 308
               VIVGADRVA+NGDTANKIGTYSLALCAK H I FYVAAPLTS+DL+LSSG+EIVIEER
Sbjct:   246 DGVIVGADRVASNGDTANKIGTYSLALCAKHHGIPFYVAAPLTSVDLSLSSGKEIVIEER 305

Query:   309 SAKELLCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKD 368
             S KEL+ + GGLGE++AA GISVWNPAFD+TPA LI GIITEK GV+TK G +D FDI  
Sbjct:   306 SPKELMHTHGGLGERIAAPGISVWNPAFDMTPAELIAGIITEK-GVITKNG-NDTFDISS 363

Query:   369 FIQK 372
             F +K
Sbjct:   364 FAKK 367
GO:0003743 "translation initiation factor activity" evidence=ISS
GO:0005525 "GTP binding" evidence=ISS
GO:0005576 "extracellular region" evidence=ISM
GO:0005634 "nucleus" evidence=IBA
GO:0005737 "cytoplasm" evidence=IBA
GO:0005851 "eukaryotic translation initiation factor 2B complex" evidence=ISS
GO:0006413 "translational initiation" evidence=ISS
GO:0019509 "L-methionine salvage from methylthioadenosine" evidence=IBA
GO:0044237 "cellular metabolic process" evidence=IEA
GO:0044249 "cellular biosynthetic process" evidence=IEA
GO:0046523 "S-methyl-5-thioribose-1-phosphate isomerase activity" evidence=IBA
GO:0071281 "cellular response to iron ion" evidence=IEP
GO:0071369 "cellular response to ethylene stimulus" evidence=IEP
GO:0071732 "cellular response to nitric oxide" evidence=IEP
GO:0009506 "plasmodesma" evidence=IDA
GO:0000023 "maltose metabolic process" evidence=RCA
GO:0000394 "RNA splicing, via endonucleolytic cleavage and ligation" evidence=RCA
GO:0009086 "methionine biosynthetic process" evidence=RCA
GO:0019252 "starch biosynthetic process" evidence=RCA
GO:0043085 "positive regulation of catalytic activity" evidence=RCA
UNIPROTKB|Q0ITU1 IDI2 "Methylthioribose-1-phosphate isomerase" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
ASPGD|ASPL0000073543 AN4290 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|Q5B590 mri1 "Methylthioribose-1-phosphate isomerase" [Aspergillus nidulans FGSC A4 (taxid:227321)] Back     alignment and assigned GO terms
FB|FBgn0039849 CG11334 [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-080204-109 mri1 "methylthioribose-1-phosphate isomerase homolog (S. cerevisiae)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
UNIPROTKB|F1SD78 MRI1 "Methylthioribose-1-phosphate isomerase" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9BV20 MRI1 "Methylthioribose-1-phosphate isomerase" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2R7C2 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|J9P6Q4 MRI1 "Methylthioribose-1-phosphate isomerase" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
C0S1C8MTNA_PARBP5, ., 3, ., 1, ., 2, 30.54830.91970.8911N/Ano
Q0CFY3MTNA_ASPTN5, ., 3, ., 1, ., 2, 30.58150.93040.9230N/Ano
B4PNE2MTNA_DROYA5, ., 3, ., 1, ., 2, 30.53130.91710.9423N/Ano
Q0ITU1MTNA_ORYSJ5, ., 3, ., 1, ., 2, 30.74510.95980.9598yesno
B4LWZ8MTNA_DROVI5, ., 3, ., 1, ., 2, 30.53560.88230.9116N/Ano
B3P538MTNA_DROER5, ., 3, ., 1, ., 2, 30.53290.92510.9505N/Ano
C1G9Q3MTNA_PARBD5, ., 3, ., 1, ., 2, 30.55700.91970.9005N/Ano
Q5B590MTNA_EMENI5, ., 3, ., 1, ., 2, 30.55960.94910.9366yesno
C0P108MTNA_AJECG5, ., 3, ., 1, ., 2, 30.56650.93040.8877N/Ano
B4K8A4MTNA_DROMO5, ., 3, ., 1, ., 2, 30.54700.88230.9116N/Ano
Q6CGS4MTNA_YARLI5, ., 3, ., 1, ., 2, 30.53080.94110.9462yesno
Q0VFN1MTNA_XENTR5, ., 3, ., 1, ., 2, 30.54490.88770.9378yesno
Q948X8MTNA_TOBAC5, ., 3, ., 1, ., 2, 30.79780.97050.9705N/Ano
B8M7D2MTNA_TALSN5, ., 3, ., 1, ., 2, 30.53260.96520.9401N/Ano
B4GYU1MTNA_DROPE5, ., 3, ., 1, ., 2, 30.55110.88500.9143N/Ano
B2VZQ8MTNA_PYRTR5, ., 3, ., 1, ., 2, 30.58350.91710.875N/Ano
A7RF00MTNA_NEMVE5, ., 3, ., 1, ., 2, 30.56040.88500.9457N/Ano
B6QRG1MTNA_PENMQ5, ., 3, ., 1, ., 2, 30.54950.93850.9140N/Ano
Q0ZB81MTNA_BOMMO5, ., 3, ., 1, ., 2, 30.55680.89300.9175N/Ano
Q2UIM3MTNA_ASPOR5, ., 3, ., 1, ., 2, 30.57480.95720.9396yesno
C5PBM5MTNA_COCP75, ., 3, ., 1, ., 2, 30.51210.92510.8871N/Ano
Q9AYT7MTNA_HORVU5, ., 3, ., 1, ., 2, 30.75270.96520.9836N/Ano
Q4FZP2MTNA_XENLA5, ., 3, ., 1, ., 2, 30.53330.88770.9378N/Ano
B3M098MTNA_DROAN5, ., 3, ., 1, ., 2, 30.52990.89300.9175N/Ano
B4I029MTNA_DROSE5, ., 3, ., 1, ., 2, 30.53840.92510.9505N/Ano
Q9V9X4MTNA_DROME5, ., 3, ., 1, ., 2, 30.53840.92510.9505yesno
Q4WNI1MTNA_ASPFU5, ., 3, ., 1, ., 2, 30.54940.96250.9302yesno
A9UQ62MTNA_MONBE5, ., 3, ., 1, ., 2, 30.56540.93850.9722N/Ano
A9JRE2MTNA_DANRE5, ., 3, ., 1, ., 2, 30.55680.89570.9490yesno
B9RR88MTNA_RICCO5, ., 3, ., 1, ., 2, 30.82780.97050.9502N/Ano
Q9ZUG4MTNA_ARATH5, ., 3, ., 1, ., 2, 30.77470.96520.9652yesno
B0Y5C3MTNA_ASPFC5, ., 3, ., 1, ., 2, 30.54940.96250.9302N/Ano
C5JGS0MTNA_AJEDS5, ., 3, ., 1, ., 2, 30.57250.92240.8801N/Ano
B6H5R4MTNA_PENCW5, ., 3, ., 1, ., 2, 30.52940.94110.9214yesno
Q16I17MTNA_AEDAE5, ., 3, ., 1, ., 2, 30.54910.88500.9194N/Ano
C4JWQ7MTNA_UNCRE5, ., 3, ., 1, ., 2, 30.54030.91710.8886N/Ano
B4QSM8MTNA_DROSI5, ., 3, ., 1, ., 2, 30.53840.92510.9505N/Ano
B6TZD1MTNA_MAIZE5, ., 3, ., 1, ., 2, 30.76790.95980.9782N/Ano
B9HCR2MTNA_POPTR5, ., 3, ., 1, ., 2, 30.81590.96520.9401yesno
Q29BB3MTNA_DROPS5, ., 3, ., 1, ., 2, 30.55110.88500.9143yesno
B4JRX2MTNA_DROGR5, ., 3, ., 1, ., 2, 30.53590.91710.9449N/Ano
A6R364MTNA_AJECN5, ., 3, ., 1, ., 2, 30.57060.93040.8900N/Ano
C5GGE5MTNA_AJEDR5, ., 3, ., 1, ., 2, 30.57250.92240.8801N/Ano
C5FY68MTNA_ARTOC5, ., 3, ., 1, ., 2, 30.52090.95180.9246N/Ano
Q9BV20MTNA_HUMAN5, ., 3, ., 1, ., 2, 30.55100.89570.9078yesno
D7TCD0MTNA_VITVI5, ., 3, ., 1, ., 2, 30.80210.97590.9707yesno
B4NG41MTNA_DROWI5, ., 3, ., 1, ., 2, 30.55080.88770.9095N/Ano
A1CY38MTNA_NEOFI5, ., 3, ., 1, ., 2, 30.55200.96250.9302N/Ano
A2ZCP0MTNA_ORYSI5, ., 3, ., 1, ., 2, 30.74510.95980.9598N/Ano
Q7PKS9MTNA_ANOGA5, ., 3, ., 1, ., 2, 30.54540.89300.9515yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer5.3.10.983
3rd Layer5.3.1.230.979

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
estExt_fgenesh4_pm.C_LG_VI0635
hypothetical protein (384 aa)
(Populus trichocarpa)
Predicted Functional Partners:
estExt_Genewise1_v1.C_LG_IX2396
SubName- Full=Putative uncharacterized protein; (418 aa)
•••  •• 0.964
fgenesh4_pm.C_LG_I001056
S-methyl-5-thioribose kinase (EC-2.7.1.100) (418 aa)
•••  •• 0.963
eugene3.79220002
Predicted protein (212 aa)
•    •• 0.821
estExt_fgenesh4_pg.C_1070035
hypothetical protein (504 aa)
• •• •• 0.812
estExt_Genewise1_v1.C_LG_VIII0915
hypothetical protein (200 aa)
• •   • 0.748
estExt_Genewise1_v1.C_LG_VIII2401
hypothetical protein (190 aa)
• •   • 0.715
estExt_Genewise1_v1.C_LG_X1266
hypothetical protein (387 aa)
•       0.699
gw1.V.3607.1
phosphoserine transaminase (EC-2.6.1.52) (378 aa)
•     • 0.693
eugene3.00880022
RecName- Full=Adenosylhomocysteinase; EC=3.3.1.1; (485 aa)
•       0.677
estExt_Genewise1_v1.C_LG_I3343
adenosylhomocysteinase/s-adenosyl-l-homocysteine hydrolase (EC-3.3.1.1) (485 aa)
•       0.670

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
TIGR00512331 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-p 1e-176
COG0182346 COG0182, COG0182, Predicted translation initiation 1e-141
PRK05720344 PRK05720, mtnA, methylthioribose-1-phosphate isome 1e-139
TIGR00524303 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-rel 1e-110
PRK06036339 PRK06036, PRK06036, translation initiation factor 7e-91
PRK08334356 PRK08334, PRK08334, translation initiation factor 1e-86
pfam01008281 pfam01008, IF-2B, Initiation factor 2 subunit fami 4e-85
PRK05772363 PRK05772, PRK05772, translation initiation factor 7e-77
PRK06371329 PRK06371, PRK06371, translation initiation factor 1e-75
PRK08535310 PRK08535, PRK08535, translation initiation factor 8e-55
TIGR00511301 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate 9e-46
COG1184301 COG1184, GCD2, Translation initiation factor 2B su 3e-38
PRK08335275 PRK08335, PRK08335, translation initiation factor 3e-13
PRK06372253 PRK06372, PRK06372, translation initiation factor 1e-11
>gnl|CDD|233003 TIGR00512, salvage_mtnA, S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information 
 Score =  491 bits (1267), Expect = e-176
 Identities = 187/344 (54%), Positives = 232/344 (67%), Gaps = 13/344 (3%)

Query: 14  QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEV 73
           ++I + RGSL+LLDQR LP E+ Y+E+    D   AIR+M VRGAPAI + AA  LA+  
Sbjct: 1   RAIKWNRGSLELLDQRLLPHESEYIEVTTVEDVADAIRDMRVRGAPAIGIVAAYGLALAA 60

Query: 74  FNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQ 133
              +       +  + L  KL+YLVSSRPTAVNLS A  +++  +  A   A     + +
Sbjct: 61  READ----EREEFKALLEEKLQYLVSSRPTAVNLSWALDRMRAALEAAKTVAD----IKE 112

Query: 134 AYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFSVLTHCNTGSLATAGYGTALGVI 193
           A +  AE +L++D+  N+AIG  GA+ ++  +      VLTHCNTGSLATAGYGTALGVI
Sbjct: 113 ALLAEAERILEEDLEDNRAIGENGAALIKKGVAA-PLRVLTHCNTGSLATAGYGTALGVI 171

Query: 194 RALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAVIV 253
           R+ H +G LE  Y  ETRP  QG+RLTA+ELV + IPATLI DS AA LMK G V AVIV
Sbjct: 172 RSAHEKGRLEHVYADETRPRLQGARLTAWELVQEGIPATLITDSMAAHLMKHGEVDAVIV 231

Query: 254 GADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKEL 313
           GADR+AANGDTANKIGTY LA+ AK H + FYVAAP ++IDL    G EI IEER  +E+
Sbjct: 232 GADRIAANGDTANKIGTYQLAVLAKHHGVPFYVAAPTSTIDLETKDGAEIPIEERPPEEV 291

Query: 314 LCSRGGLGEQVAASGISVWNPAFDVTPANLITGIITEKQGVVTK 357
                  G ++A  GI VWNPAFDVTPA LITGIITEK GV+T 
Sbjct: 292 THVG---GVRIAPPGIDVWNPAFDVTPAELITGIITEK-GVITP 331

The delineation of this family was based in part on a discussion and neighbor-joining phylogenetic study, by Kyrpides and Woese, of archaeal and other proteins homologous to the alpha, beta, and delta subunits of eukaryotic initiation factor 2B (eIF-2B), a five-subunit molecule that catalyzes GTP recycling for eIF-2. This clade is now recognized to include the methionine salvage pathway enzyme MtnA [Amino acid biosynthesis, Aspartate family]. Length = 331
>gnl|CDD|223260 COG0182, COG0182, Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|235578 PRK05720, mtnA, methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>gnl|CDD|233008 TIGR00524, eIF-2B_rel, eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>gnl|CDD|180362 PRK06036, PRK06036, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|169386 PRK08334, PRK08334, translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>gnl|CDD|216240 pfam01008, IF-2B, Initiation factor 2 subunit family Back     alignment and domain information
>gnl|CDD|168237 PRK05772, PRK05772, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|180547 PRK06371, PRK06371, translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>gnl|CDD|236282 PRK08535, PRK08535, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>gnl|CDD|188057 TIGR00511, ribulose_e2b2, ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>gnl|CDD|224105 COG1184, GCD2, Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>gnl|CDD|169387 PRK08335, PRK08335, translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>gnl|CDD|235788 PRK06372, PRK06372, translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 374
COG0182346 Predicted translation initiation factor 2B subunit 100.0
PRK05720344 mtnA methylthioribose-1-phosphate isomerase; Revie 100.0
PRK08334356 translation initiation factor IF-2B subunit beta; 100.0
TIGR00512331 salvage_mtnA S-methyl-5-thioribose-1-phosphate iso 100.0
PRK05772363 translation initiation factor IF-2B subunit alpha; 100.0
PRK06036339 translation initiation factor IF-2B subunit alpha; 100.0
PRK06371329 translation initiation factor IF-2B subunit alpha; 100.0
KOG1468354 consensus Predicted translation initiation factor 100.0
TIGR00524303 eIF-2B_rel eIF-2B alpha/beta/delta-related unchara 100.0
TIGR00511301 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e 100.0
PRK08535310 translation initiation factor IF-2B subunit delta; 100.0
PRK08335275 translation initiation factor IF-2B subunit alpha; 100.0
COG1184301 GCD2 Translation initiation factor 2B subunit, eIF 100.0
PF01008282 IF-2B: Initiation factor 2 subunit family; InterPr 100.0
KOG1466313 consensus Translation initiation factor 2B, alpha 100.0
KOG1467556 consensus Translation initiation factor 2B, delta 100.0
KOG1465353 consensus Translation initiation factor 2B, beta s 100.0
PRK06372253 translation initiation factor IF-2B subunit delta; 100.0
TIGR00021218 rpiA ribose 5-phosphate isomerase. This model desc 97.3
cd01398213 RPI_A RPI_A: Ribose 5-phosphate isomerase type A ( 97.26
PRK10434256 srlR DNA-bindng transcriptional repressor SrlR; Pr 97.1
PRK00702220 ribose-5-phosphate isomerase A; Provisional 97.04
PF00455161 DeoRC: DeoR C terminal sensor domain; InterPro: IP 97.01
PRK13509251 transcriptional repressor UlaR; Provisional 96.84
PRK09802269 DNA-binding transcriptional regulator AgaR; Provis 96.71
PRK10411240 DNA-binding transcriptional activator FucR; Provis 96.32
PRK10906252 DNA-binding transcriptional repressor GlpR; Provis 96.26
COG1349253 GlpR Transcriptional regulators of sugar metabolis 96.05
PRK10681252 DNA-binding transcriptional repressor DeoR; Provis 95.47
cd00532112 MGS-like MGS-like domain. This domain composes the 93.48
PF0214295 MGS: MGS-like domain This is a subfamily of this f 93.25
cd01424110 MGS_CPS_II Methylglyoxal synthase-like domain from 91.41
PLN02384264 ribose-5-phosphate isomerase 90.86
smart0085190 MGS MGS-like domain. This domain composes the whol 90.48
PRK13978228 ribose-5-phosphate isomerase A; Provisional 89.65
cd01423116 MGS_CPS_I_III Methylglyoxal synthase-like domain f 89.59
COG0120227 RpiA Ribose 5-phosphate isomerase [Carbohydrate tr 88.29
PRK05234142 mgsA methylglyoxal synthase; Validated 87.44
PF01073280 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/iso 86.09
COG2057225 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, 84.98
>COG0182 Predicted translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information 
Probab=100.00  E-value=7.2e-102  Score=732.57  Aligned_cols=333  Identities=51%  Similarity=0.754  Sum_probs=320.5

Q ss_pred             CceeEEEeCC-eEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHH
Q 017293           12 SLQSICYRRG-SLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFL   90 (374)
Q Consensus        12 ~~~~i~~~~~-~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l   90 (374)
                      ++++|+|+++ +|.|||||+||++++|++|+++++++.|||+|+|||||+||++|+||+++++++.. ...+.+|+.+.+
T Consensus         2 ~~~~i~w~~~~~v~llDQr~LP~e~~~v~~~~~~dva~AIk~M~VRGAPAIgv~AayG~alaa~~~~-~~~~~~e~~~~l   80 (346)
T COG0182           2 KLRPIEWKDDGSVKLLDQRLLPFEEKYVECKTYEDVAEAIKDMVVRGAPAIGVAAAYGLALAARESK-NDSKGEEFIEAL   80 (346)
T ss_pred             CceeEEEcCCCeEEEEecccCCceEEEEEeccHHHHHHHHHhhhccCCcHHHHHHHHHHHHHHHhcc-cccchHHHHHHH
Confidence            5899999888 79999999999999999999999999999999999999999999999999999862 123468999999


Q ss_pred             HHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCc
Q 017293           91 GNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKF  170 (374)
Q Consensus        91 ~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~  170 (374)
                      .++.+.|.++|||++||+|++++|++...+..    +.++.+..+.+++.++.+|+...|.+|+++|+++|.     +++
T Consensus        81 e~a~~~l~~tRPTAvNLfwal~rm~~~~~~~~----~v~~~~~~~~~eA~~i~~ED~e~n~~iG~~G~~ll~-----~~~  151 (346)
T COG0182          81 EKAAETLKSTRPTAVNLFWALDRMLNAAKEAI----EVKEPKESILQEAEEIAEEDLEANRAIGENGAELLP-----DGD  151 (346)
T ss_pred             HHHHHHHhhcCchhHHHHHHHHHHHHHHhhcc----chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-----cCC
Confidence            99999999999999999999999999887652    478899999999999999999999999999999999     899


Q ss_pred             EEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCE
Q 017293          171 SVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSA  250 (374)
Q Consensus       171 ~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~  250 (374)
                      +||||||+|+|||+||||+++++|.||++||..+||++||||++||+|||+|||.+.|||+|+|+|||+|++|+++.||+
T Consensus       152 ~VLThCNaGaLAt~~~GTAlgviR~a~~~gk~i~v~a~ETRP~lQGARLTawEL~~~GIpvtLItD~aag~~M~~g~Id~  231 (346)
T COG0182         152 TVLTHCNAGALATVGYGTALGVIRSAHEEGKDIRVFADETRPYLQGARLTAWELVQDGIPVTLITDNAAGHLMQQGMIDA  231 (346)
T ss_pred             eEEeeecCCceeecCccchHHHHHHHHHCCCeeEEEeCCCccccccceeeHHHHhhcCCceEEEeccHHHHHHHhCCCcE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCce
Q 017293          251 VIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGIS  330 (374)
Q Consensus       251 VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~  330 (374)
                      |+||||||+.||+++||||||++|++||+|||||||++|.++||+...+|++|+||+|||+||..++   |.+++|++++
T Consensus       232 viVGADRI~~nGdvaNKIGTY~lAvlAk~~gIPFyVaAP~sTiD~~~~~G~~I~IEER~p~Ev~~v~---g~riap~~v~  308 (346)
T COG0182         232 VIVGADRIAANGDVANKIGTYQLAVLAKHHGIPFYVAAPLSTIDFELKSGEDIPIEERDPEEVLEVG---GVRIAPEGVE  308 (346)
T ss_pred             EEEccceeecCCcchhhhhHHHHHHHHHHcCCCeEEEcccCccccccCCCCccceeecCHHHeEeec---cEEeCCCCcc
Confidence            9999999999999999999999999999999999999999999999999999999999999999998   7889999999


Q ss_pred             eecceeeecCCCCccEEEeCCCCcccCC
Q 017293          331 VWNPAFDVTPANLITGIITEKQGVVTKA  358 (374)
Q Consensus       331 v~np~fD~tP~~lIt~iITE~~Gi~~p~  358 (374)
                      ++||+||+|||+|||+||||+ |++.|+
T Consensus       309 ~yNPAFDvTP~~lItgIITEk-Gv~~p~  335 (346)
T COG0182         309 AYNPAFDVTPPELITGIITEK-GVFTPP  335 (346)
T ss_pred             ccCccccCChHHhcceeeecc-ceecCc
Confidence            999999999999999999999 999998

>PRK05720 mtnA methylthioribose-1-phosphate isomerase; Reviewed Back     alignment and domain information
>PRK08334 translation initiation factor IF-2B subunit beta; Validated Back     alignment and domain information
>TIGR00512 salvage_mtnA S-methyl-5-thioribose-1-phosphate isomerase Back     alignment and domain information
>PRK05772 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06036 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>PRK06371 translation initiation factor IF-2B subunit alpha; Provisional Back     alignment and domain information
>KOG1468 consensus Predicted translation initiation factor related to eIF-2B alpha/beta/delta subunits (CIG2/IDI2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>TIGR00524 eIF-2B_rel eIF-2B alpha/beta/delta-related uncharacterized proteins Back     alignment and domain information
>TIGR00511 ribulose_e2b2 ribose-1,5-bisphosphate isomerase, e2b2 family Back     alignment and domain information
>PRK08535 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>PRK08335 translation initiation factor IF-2B subunit alpha; Validated Back     alignment and domain information
>COG1184 GCD2 Translation initiation factor 2B subunit, eIF-2B alpha/beta/delta family [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PF01008 IF-2B: Initiation factor 2 subunit family; InterPro: IPR000649 Initiation factor 2 binds to Met-tRNA, GTP and the small ribosomal subunit Back     alignment and domain information
>KOG1466 consensus Translation initiation factor 2B, alpha subunit (eIF-2Balpha/GCN3) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1467 consensus Translation initiation factor 2B, delta subunit (eIF-2Bdelta/GCD2) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>KOG1465 consensus Translation initiation factor 2B, beta subunit (eIF-2Bbeta/GCD7) [Translation, ribosomal structure and biogenesis] Back     alignment and domain information
>PRK06372 translation initiation factor IF-2B subunit delta; Provisional Back     alignment and domain information
>TIGR00021 rpiA ribose 5-phosphate isomerase Back     alignment and domain information
>cd01398 RPI_A RPI_A: Ribose 5-phosphate isomerase type A (RPI_A) subfamily; RPI catalyzes the reversible conversion of ribose-5-phosphate to ribulose 5-phosphate, the first step of the non-oxidative branch of the pentose phosphate pathway Back     alignment and domain information
>PRK10434 srlR DNA-bindng transcriptional repressor SrlR; Provisional Back     alignment and domain information
>PRK00702 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>PF00455 DeoRC: DeoR C terminal sensor domain; InterPro: IPR014036 The deoR-type HTH domain is a DNA-binding, helix-turn-helix (HTH) domain of about 50-60 amino acids present in transcription regulators of the deoR family, involved in sugar catabolism Back     alignment and domain information
>PRK13509 transcriptional repressor UlaR; Provisional Back     alignment and domain information
>PRK09802 DNA-binding transcriptional regulator AgaR; Provisional Back     alignment and domain information
>PRK10411 DNA-binding transcriptional activator FucR; Provisional Back     alignment and domain information
>PRK10906 DNA-binding transcriptional repressor GlpR; Provisional Back     alignment and domain information
>COG1349 GlpR Transcriptional regulators of sugar metabolism [Transcription / Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK10681 DNA-binding transcriptional repressor DeoR; Provisional Back     alignment and domain information
>cd00532 MGS-like MGS-like domain Back     alignment and domain information
>PF02142 MGS: MGS-like domain This is a subfamily of this family; InterPro: IPR011607 This domain composes the whole protein of methylglyoxal synthetase and the domain is also found in carbamoyl phosphate synthetase (CPS) where it forms a regulatory domain that binds to the allosteric effector ornithine Back     alignment and domain information
>cd01424 MGS_CPS_II Methylglyoxal synthase-like domain from type II glutamine-dependent carbamoyl phosphate synthetase (CSP) Back     alignment and domain information
>PLN02384 ribose-5-phosphate isomerase Back     alignment and domain information
>smart00851 MGS MGS-like domain Back     alignment and domain information
>PRK13978 ribose-5-phosphate isomerase A; Provisional Back     alignment and domain information
>cd01423 MGS_CPS_I_III Methylglyoxal synthase-like domain found in pyr1 and URA1-like carbamoyl phosphate synthetases (CPS), including ammonia-dependent CPS Type I, and glutamine-dependent CPS Type III Back     alignment and domain information
>COG0120 RpiA Ribose 5-phosphate isomerase [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK05234 mgsA methylglyoxal synthase; Validated Back     alignment and domain information
>PF01073 3Beta_HSD: 3-beta hydroxysteroid dehydrogenase/isomerase family; InterPro: IPR002225 The enzyme 3 beta-hydroxysteroid dehydrogenase/5-ene-4-ene isomerase (3 beta-HSD) catalyses the oxidation and isomerisation of 5-ene-3 beta-hydroxypregnene and 5-ene-hydroxyandrostene steroid precursors into the corresponding 4-ene-ketosteroids necessary for the formation of all classes of steroid hormones Back     alignment and domain information
>COG2057 AtoA Acyl CoA:acetate/3-ketoacid CoA transferase, beta subunit [Lipid metabolism] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
2a0u_A383 Crystal Structure Of The Eukaryotic Initiation Fact 4e-74
1t9k_A347 X-ray Crystal Structure Of Aif-2b Alpha Subunit-rel 2e-61
2yrf_A374 Crystal Structure Of 5-Methylthioribose 1-Phosphate 4e-53
1t5o_A351 Crystal Structure Of The Translation Initiation Fac 1e-49
1w2w_B191 Crystal Structure Of Yeast Ypr118w, A Methylthiorib 1e-31
1w2w_A211 Crystal Structure Of Yeast Ypr118w, A Methylthiorib 7e-24
3a11_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 9e-21
3vm6_A338 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 1e-19
3a9c_F323 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-19
3a9c_A321 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-19
3a9c_E322 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-19
3a9c_B326 Crystal Structure Of Ribose-1,5-Bisphosphate Isomer 2e-17
1vb5_A276 Crystal Structure Analysis Of The Pyrococcus Horiko 6e-09
3ecs_A315 Crystal Structure Of Human Eif2b Alpha Length = 315 5e-07
>pdb|2A0U|A Chain A, Crystal Structure Of The Eukaryotic Initiation Factor 2b From Leishmania Major At 2.1 A Resolution Length = 383 Back     alignment and structure 
Iteration: 1

 Score =  275 bits (702), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 159/371 (42%), Positives = 221/371 (59%), Gaps = 15/371 (4%)
Query: 12  SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGXXXXXXXXXXXXXV 71
           +L+SI Y  GSL+LLDQRKLPLET++ ++    D WSAI+E  VRG             V
Sbjct: 17  TLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEXRVRGAPAIAVSAALGIAV 76
Query: 72  EVFN--LNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEAN 129
                  N    +  +  +FL    +++ +SRPTAVNL +    LK  + K   T + A 
Sbjct: 77  ATQRKAANGELKSGREVQTFLLTSCDFVXTSRPTAVNLFNCLRDLKAQVDKLDPTKAAAE 136
Query: 130 SVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLK---NSKFSVLTHCNTGSLATAGY 186
            V QA++E AE +  +DVA N+ I  +GA+ +    K     K S+LT CNTG+LAT+ Y
Sbjct: 137 -VAQAFVELAEAVYTNDVAFNEGIXRHGAAHILAAAKAEGRDKVSILTICNTGALATSRY 195
Query: 187 GTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPXXXXXXXXXXXLMKDG 246
           GTALGV+R L  +G LER Y  ETRP+NQG+RLT +E V + IP           L  + 
Sbjct: 196 GTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLXLNR 255
Query: 247 RVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIE 306
           ++ AV+VGADR+  NGDTANKIGTY+LA+ AKFH +  YVAAP T++D+  +SG  + IE
Sbjct: 256 KIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHVEIE 315
Query: 307 ERSAKEL---LCSRGGLGEQVAASG--ISVWNPAFDVTPANLITGIITEKQGVVTKAGAD 361
           ER   E+   L ++    ++V A G  +S+WNP FD+TP+ LITG I  ++GV   A + 
Sbjct: 316 EREPTEITTNLVTK----QRVVADGPHLSIWNPVFDITPSELITGGIITEKGVQAPAASA 371
Query: 362 DAFDIKDFIQK 372
             +DI   I +
Sbjct: 372 PYYDIASIIAQ 382
>pdb|1T9K|A Chain A, X-ray Crystal Structure Of Aif-2b Alpha Subunit-related Translation Initiation Factor [thermotoga Maritima] Length = 347 Back     alignment and structure
>pdb|2YRF|A Chain A, Crystal Structure Of 5-Methylthioribose 1-Phosphate Isomerase From Bacillus Subtilis Complexed With Sulfate Ion Length = 374 Back     alignment and structure
>pdb|1T5O|A Chain A, Crystal Structure Of The Translation Initiation Factor Eif-2b, Subunit Delta, From A. Fulgidus Length = 351 Back     alignment and structure
>pdb|1W2W|B Chain B, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 191 Back     alignment and structure
>pdb|1W2W|A Chain A, Crystal Structure Of Yeast Ypr118w, A Methylthioribose-1- Phosphate Isomerase Related To Regulatory Eif2b Subunits Length = 211 Back     alignment and structure
>pdb|3A11|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakaraensis Kod1 Length = 338 Back     alignment and structure
>pdb|3VM6|A Chain A, Crystal Structure Of Ribose-1,5-Bisphosphate Isomerase From Thermococcus Kodakarensis Kod1 In Complex With Alpha-D-Ribose-1,5- Bisphosphate Length = 338 Back     alignment and structure
>pdb|1VB5|A Chain A, Crystal Structure Analysis Of The Pyrococcus Horikoshii Ot3 Translation Initiation Factor Eif-2b Length = 276 Back     alignment and structure
>pdb|3ECS|A Chain A, Crystal Structure Of Human Eif2b Alpha Length = 315 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query374
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 0.0
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 1e-173
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 1e-172
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 1e-166
3a11_A338 Translation initiation factor EIF-2B, delta subun; 1e-145
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 1e-120
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 4e-95
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 9e-95
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 8e-76
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Length = 383 Back     alignment and structure
 Score =  518 bits (1336), Expect = 0.0
 Identities = 179/374 (47%), Positives = 245/374 (65%), Gaps = 11/374 (2%)

Query: 7   STDNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAA 66
              + +L+SI Y  GSL+LLDQRKLPLET++ ++    D WSAI+EM VRGAPAIA++AA
Sbjct: 12  KPHHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAA 71

Query: 67  LSLAVEVFNL--NAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAAT 124
           L +AV       N    +  +  +FL    +++++SRPTAVNL +    LK  + K   T
Sbjct: 72  LGIAVATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPT 131

Query: 125 ASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNS---KFSVLTHCNTGSL 181
            + A  V QA++E AE +  +DVA N+ I  +GA+ +    K     K S+LT CNTG+L
Sbjct: 132 KA-AAEVAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGAL 190

Query: 182 ATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAA 241
           AT+ YGTALGV+R L  +G LER Y  ETRP+NQG+RLT +E V + IP TLI D AA++
Sbjct: 191 ATSRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASS 250

Query: 242 LMKDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQ 301
           LM + ++ AV+VGADR+  NGDTANKIGTY+LA+ AKFH +  YVAAP T++D+  +SG 
Sbjct: 251 LMLNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGN 310

Query: 302 EIVIEERSAKELLCSRGGLGEQVAASG--ISVWNPAFDVTPANLIT-GIITEKQGVVTKA 358
            + IEER   E+  +     ++V A G  +S+WNP FD+TP+ LIT GIITEK GV   A
Sbjct: 311 HVEIEEREPTEITTNLVT-KQRVVADGPHLSIWNPVFDITPSELITGGIITEK-GVQAPA 368

Query: 359 GADDAFDIKDFIQK 372
            +   +DI   I +
Sbjct: 369 ASAPYYDIASIIAQ 382
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Length = 374 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Length = 347 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Length = 351 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Length = 338 Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Length = 276 Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 191 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Length = 315 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Length = 211 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
2yvk_A374 Methylthioribose-1-phosphate isomerase; methionine 100.0
2a0u_A383 Initiation factor 2B; SGPP, structural genomics, P 100.0
1t5o_A351 EIF2BD, translation initiation factor EIF2B, subun 100.0
1t9k_A347 Probable methylthioribose-1-phosphate isomerase; s 100.0
3a11_A338 Translation initiation factor EIF-2B, delta subun; 100.0
1vb5_A276 Translation initiation factor EIF-2B; 2.20A {Pyroc 100.0
3ecs_A315 Translation initiation factor EIF-2B subunit alpha 100.0
1w2w_B191 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1w2w_A211 5-methylthioribose-1-phosphate isomerase; EIF2B, m 100.0
1uj6_A227 Ribose 5-phosphate isomerase; enzyme-inhibitor com 98.21
3kwm_A224 Ribose-5-phosphate isomerase A; structural genomic 97.6
1m0s_A219 Ribose-5-phosphate isomerase A; D-ribose 5-phospha 97.58
2f8m_A244 Ribose 5-phosphate isomerase; structural genomics, 97.57
1lk5_A229 D-ribose-5-phosphate isomerase; alpha/beta structu 97.48
3l7o_A225 Ribose-5-phosphate isomerase A; RPIA; 1.70A {Strep 97.28
1o8b_A219 Ribose 5-phosphate isomerase; RPIA, PSI, protein S 97.23
3hhe_A255 Ribose-5-phosphate isomerase A; niaid, ssgcid, dec 97.05
2pjm_A226 Ribose-5-phosphate isomerase A; 3D-structure, stru 96.91
1xtz_A264 Ribose-5-phosphate isomerase; yeast; 2.10A {Saccha 96.75
3uw1_A239 Ribose-5-phosphate isomerase A; ssgcid, seattle st 96.68
2yvq_A143 Carbamoyl-phosphate synthase; conserved hypothetic 86.76
1b93_A152 Protein (methylglyoxal synthase); glycolytic bypas 85.04
>2yvk_A Methylthioribose-1-phosphate isomerase; methionine salvage pathway,; HET: MRU; 2.40A {Bacillus subtilis} PDB: 2yrf_A* Back     alignment and structure
Probab=100.00  E-value=5.2e-97  Score=731.71  Aligned_cols=345  Identities=41%  Similarity=0.605  Sum_probs=327.5

Q ss_pred             CCc-eeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHH
Q 017293           11 NSL-QSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASF   89 (374)
Q Consensus        11 ~~~-~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~   89 (374)
                      -++ ++|+|+++.|+|||||+||++++|++|+++++++++||+|+|||||+||++|++++++++++.  .+.+.++|.+.
T Consensus        26 m~~~~~~~~~~~~l~ilDq~~lP~~~~~~~~~~~~~~~~aIk~m~VrGApaIgiaaa~~l~l~~~~~--~~~~~~~l~~~  103 (374)
T 2yvk_A           26 FAVPRSVEWKETAITILNQQKLPDETEYLELTTKEDVFDAIVTLKVRGAPAIGITAAFGLALAAKDI--ETDNVTEFRRR  103 (374)
T ss_dssp             GGSCCSEEECSSCEEEECGGGTTTCCCEEEECSHHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHTTC--CCSCHHHHHHH
T ss_pred             CcccCceEEeCCEEEEEecCCCCCeEEEEEeCCHHHHHHHHHhCccCCcHHHHHHHHHHHHHHHHhc--cCCCHHHHHHH
Confidence            457 899999999999999999999999999999999999999999999999999999999999876  35678999999


Q ss_pred             HHHHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCC
Q 017293           90 LGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSK  169 (374)
Q Consensus        90 l~~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~  169 (374)
                      |++++++|.++|||++||+|+++++++.+++.    .+.+++++.+++.+++|.+|+..++++|+++|+++|.     +|
T Consensus       104 l~~~~~~L~~aRPtavnL~~ai~r~~~~i~~~----~~~~~~k~~l~~~a~~~~~e~~~~~~~I~~~g~~~I~-----~g  174 (374)
T 2yvk_A          104 LEDIKQYLNSSRPTAINLSWALERLSHSVENA----ISVNEAKTNLVHEAIQIQVEDEETCRLIGQNALQLFK-----KG  174 (374)
T ss_dssp             HHHHHHHHHTTCSSCHHHHHHHHHHHHHTTTC----SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHGGGCC-----TT
T ss_pred             HHHHHHHHHHhCCcHHHHHHHHHHHHHHHHhc----CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-----CC
Confidence            99999999999999999999999999887532    4788999999999999999999999999999999999     89


Q ss_pred             cEEEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCC
Q 017293          170 FSVLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVS  249 (374)
Q Consensus       170 ~~ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd  249 (374)
                      ++||||||||+|||+||||++++|+.|+++|++|+|||+||||++||.|+|||+|.+.|||||+|+|||++++|++++||
T Consensus       175 ~~ILThcnsg~Lat~g~gTal~~l~~A~~~gk~~~V~v~EtRP~~qG~rltA~eL~~~GIpvtlI~Dsa~~~~M~~~~Vd  254 (374)
T 2yvk_A          175 DRIMTICNAGSIATSRYGTALAPFYLAKQKDLGLHIYACETRPVLQGSRLTAWELMQGGIDVTLITDSMAAHTMKEKQIS  254 (374)
T ss_dssp             CEEEECSCCSTTTSSSSCSTTHHHHHHHHTTCCCEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHHTTCC
T ss_pred             CEEEEecCCCccccCCCcHHHHHHHHHHHcCCEEEEEEeCCCCccccHHHHHHHHHHcCCCEEEEehhHHHHHhhhcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999888899


Q ss_pred             EEEEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCc
Q 017293          250 AVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGI  329 (374)
Q Consensus       250 ~VlvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~  329 (374)
                      +||+|||+|++||+++||+|||++|++||+|||||||+||+||||+.++.|.++++|+|+|+|+....   |.++.++++
T Consensus       255 ~ViVGAD~V~aNG~v~NKiGTy~lAl~Ak~~~vPfyV~ap~~k~d~~~~~g~~i~iEer~~~Ev~~~~---g~~~~~~~v  331 (374)
T 2yvk_A          255 AVIVGADRIAKNGDTANKIGTYGLAILANAFDIPFFVAAPLSTFDTKVKCGADIPIEERDPEEVRQIS---GVRTAPSNV  331 (374)
T ss_dssp             EEEECCSEEETTCCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTC
T ss_pred             EEEECccEEecCCCEEecccHHHHHHHHHHcCCCEEEecccceeCccCCCccccccccCCHHHhcccC---CceecCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999876   566778999


Q ss_pred             eeecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHhhh
Q 017293          330 SVWNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQKT  373 (374)
Q Consensus       330 ~v~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~~~  373 (374)
                      +++||+||+|||+|||+||||+ |+++|+. .  ++|.++|.++
T Consensus       332 ~v~NPaFDvTP~~lIt~iITE~-Gv~~P~~-~--~~l~~~~~~~  371 (374)
T 2yvk_A          332 PVFNPAFDITPHDLISGIITEK-GIMTGNY-E--EEIEQLFKGE  371 (374)
T ss_dssp             CBCCBSEEEECGGGCSEEEETT-EEECSCH-H--HHHHHHTCC-
T ss_pred             ceeCcceeccCHHHCCEEeccC-CccCcch-H--HHHHHHhhhc
Confidence            9999999999999999999999 9999984 3  6899998765
>2a0u_A Initiation factor 2B; SGPP, structural genomics, PSI, protein structure initiative eukaryotic initiation factor; 2.10A {Leishmania major} SCOP: c.124.1.5 Back     alignment and structure
>1t5o_A EIF2BD, translation initiation factor EIF2B, subunit DELT; subunit delta, structural GEN PSI, protein structure initiative; 1.90A {Archaeoglobus fulgidus} SCOP: c.124.1.5 Back     alignment and structure
>1t9k_A Probable methylthioribose-1-phosphate isomerase; structural genomics, translation initiation factor, AIF-2B subunit, PSI; 2.60A {Thermotoga maritima} SCOP: c.124.1.5 Back     alignment and structure
>3a11_A Translation initiation factor EIF-2B, delta subun; isomerase, hexamer, rossmann fold; 2.50A {Thermococcus kodakaraensis} PDB: 3a9c_A* 3vm6_A* Back     alignment and structure
>1vb5_A Translation initiation factor EIF-2B; 2.20A {Pyrococcus horikoshii} SCOP: c.124.1.5 Back     alignment and structure
>3ecs_A Translation initiation factor EIF-2B subunit alpha; eukaryotic translation initiation factor 2balpha (EIF2balpha); 2.65A {Homo sapiens} Back     alignment and structure
>1w2w_B 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1w2w_A 5-methylthioribose-1-phosphate isomerase; EIF2B, methionine salvage pathway, translation initiation, oxidoreductase; 1.75A {Saccharomyces cerevisiae} SCOP: c.124.1.5 Back     alignment and structure
>1uj6_A Ribose 5-phosphate isomerase; enzyme-inhibitor complex, riken structural genomics/proteomi initiative, RSGI, structural genomics; HET: A5P; 1.74A {Thermus thermophilus} SCOP: c.124.1.4 d.58.40.1 PDB: 1uj5_A* 1uj4_A* Back     alignment and structure
>3kwm_A Ribose-5-phosphate isomerase A; structural genomics, IDP02119, center for structu genomics of infectious diseases, csgid; 2.32A {Francisella tularensis subsp} Back     alignment and structure
>1m0s_A Ribose-5-phosphate isomerase A; D-ribose 5-phosphate isomerase, northeast structural genomics consortium, IR21, structural genomics, PSI; HET: CIT; 1.90A {Haemophilus influenzae} SCOP: c.124.1.4 d.58.40.1 Back     alignment and structure
>2f8m_A Ribose 5-phosphate isomerase; structural genomics, PSI, protein structure initiative, STRU genomics of pathogenic protozoa consortium; 2.09A {Plasmodium falciparum} Back     alignment and structure
>1lk5_A D-ribose-5-phosphate isomerase; alpha/beta structure; 1.75A {Pyrococcus horikoshii} SCOP: c.124.1.4 d.58.40.1 PDB: 1lk7_A* Back     alignment and structure
>3l7o_A Ribose-5-phosphate isomerase A; RPIA; 1.70A {Streptococcus mutans} Back     alignment and structure
>1o8b_A Ribose 5-phosphate isomerase; RPIA, PSI, protein ST initiative, MCSG, midwest center for structural genomics; HET: ABF; 1.25A {Escherichia coli} SCOP: c.124.1.4 d.58.40.1 PDB: 1lkz_A 1ks2_A* 3enq_A 3env_A* 3enw_A* Back     alignment and structure
>3hhe_A Ribose-5-phosphate isomerase A; niaid, ssgcid, decode, SBRI, UW, STRU genomics, seattle structural genomics center for infectious; HET: 5RP; 2.30A {Bartonella henselae} Back     alignment and structure
>1xtz_A Ribose-5-phosphate isomerase; yeast; 2.10A {Saccharomyces cerevisiae} Back     alignment and structure
>3uw1_A Ribose-5-phosphate isomerase A; ssgcid, seattle structural genomics center for infectious DI isomerase, ribose isomerase; HET: R5P; 1.71A {Burkholderia thailandensis} PDB: 3u7j_A* Back     alignment and structure
>2yvq_A Carbamoyl-phosphate synthase; conserved hypothetical protein, structural genomics, NPPSFA; 1.98A {Homo sapiens} Back     alignment and structure
>1b93_A Protein (methylglyoxal synthase); glycolytic bypass, lyase; 1.90A {Escherichia coli} SCOP: c.24.1.2 PDB: 1egh_A 1ik4_A* 1s8a_A 1s89_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 374
d2a0ua1374 c.124.1.5 (A:10-383) Initiation factor 2b {Leishma 4e-99
g1w2w.1402 c.124.1.5 (A:,B:) Putative methylthioribose-1-phos 4e-93
d1t9ka_340 c.124.1.5 (A:) Probable methylthioribose-1-phospha 6e-89
d1t5oa_340 c.124.1.5 (A:) Putative eIF-2B delta-subunit {Arch 4e-84
d1vb5a_274 c.124.1.5 (A:) Putative eIF-2B subunit 2-like prot 1e-61
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Length = 374 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Initiation factor 2b
species: Leishmania major [TaxId: 5664]

 Score =  297 bits (760), Expect = 4e-99
 Identities = 178/372 (47%), Positives = 242/372 (65%), Gaps = 9/372 (2%)

Query: 9   DNNSLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALS 68
            + +L+SI Y  GSL+LLDQRKLPLET++ ++    D WSAI+EM VRGAPAIA++AAL 
Sbjct: 5   HHATLESIKYTPGSLRLLDQRKLPLETVFDDVLTVEDIWSAIKEMRVRGAPAIAVSAALG 64

Query: 69  LAVEV--FNLNAFSGTAADAASFLGNKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATAS 126
           +AV       N    +  +  +FL    +++++SRPTAVNL +    LK  + K   T +
Sbjct: 65  IAVATQRKAANGELKSGREVQTFLLTSCDFVMTSRPTAVNLFNCLRDLKAQVDKLDPTKA 124

Query: 127 EANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLK---NSKFSVLTHCNTGSLAT 183
            A  V QA++E AE +  +DVA N+ I  +GA+ +    K     K S+LT CNTG+LAT
Sbjct: 125 AAE-VAQAFVELAEAVYTNDVAFNEGIMRHGAAHILAAAKAEGRDKVSILTICNTGALAT 183

Query: 184 AGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALM 243
           + YGTALGV+R L  +G LER Y  ETRP+NQG+RLT +E V + IP TLI D AA++LM
Sbjct: 184 SRYGTALGVVRQLFYDGKLERVYACETRPWNQGARLTVYECVQEDIPCTLICDGAASSLM 243

Query: 244 KDGRVSAVIVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEI 303
            + ++ AV+VGADR+  NGDTANKIGTY+LA+ AKFH +  YVAAP T++D+  +SG  +
Sbjct: 244 LNRKIDAVVVGADRICQNGDTANKIGTYNLAVSAKFHGVKLYVAAPTTTLDVKTASGNHV 303

Query: 304 VIEERSAKELLCSRGGLGEQVAA-SGISVWNPAFDVTPANLIT-GIITEKQGVVTKAGAD 361
            IEER   E+  +       VA    +S+WNP FD+TP+ LIT GIITEK GV   A + 
Sbjct: 304 EIEEREPTEITTNLVTKQRVVADGPHLSIWNPVFDITPSELITGGIITEK-GVQAPAASA 362

Query: 362 DAFDIKDFIQKT 373
             +DI   I + 
Sbjct: 363 PYYDIASIIAQA 374
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Length = 340 Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Length = 340 Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Length = 274 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query374
d1t9ka_340 Probable methylthioribose-1-phosphate isomerase TM 100.0
d2a0ua1374 Initiation factor 2b {Leishmania major [TaxId: 566 100.0
d1t5oa_340 Putative eIF-2B delta-subunit {Archaeon Archaeoglo 100.0
g1w2w.1402 Putative methylthioribose-1-phosphate isomerase Yp 100.0
d1vb5a_274 Putative eIF-2B subunit 2-like protein PH0440 {Pyr 100.0
d1m0sa1147 D-ribose-5-phosphate isomerase (RpiA), catalytic d 96.3
d1uj4a1151 D-ribose-5-phosphate isomerase (RpiA), catalytic d 95.24
d1lk5a1149 D-ribose-5-phosphate isomerase (RpiA), catalytic d 94.27
d1a9xa2138 Carbamoyl phosphate synthetase, large subunit allo 93.28
>d1t9ka_ c.124.1.5 (A:) Probable methylthioribose-1-phosphate isomerase TM0911 {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: NagB/RpiA/CoA transferase-like
superfamily: NagB/RpiA/CoA transferase-like
family: IF2B-like
domain: Probable methylthioribose-1-phosphate isomerase TM0911
species: Thermotoga maritima [TaxId: 2336]

Probab=100.00  E-value=2.1e-96  Score=719.75  Aligned_cols=339  Identities=46%  Similarity=0.701  Sum_probs=317.8

Q ss_pred             CceeEEEeCCeEEEEecCCCCCeEEEEEecChHHHHHHHHhccccCcHHHHHHHHHHHHHHHhhccCCCCCHHHHHHHHH
Q 017293           12 SLQSICYRRGSLQLLDQRKLPLETIYLEIRDSADGWSAIREMVVRGAPAIAMAAALSLAVEVFNLNAFSGTAADAASFLG   91 (374)
Q Consensus        12 ~~~~i~~~~~~l~ilDQ~~lP~e~~~~~~~~~~~v~~aI~~m~VrGA~ai~~~aa~~l~~~~~~~~~~~~~~~el~~~l~   91 (374)
                      .+++|+|+|++|+|||||+||++++|++|++++|++++|++|+|||||+||++|||||++++++..  ..+   +.+.++
T Consensus         2 ~~~ti~w~~~~v~iLDQ~~LP~~~~~i~~~~~~~v~~AI~~M~VRGAPaIGvaaA~glala~~~~~--~~~---~~e~l~   76 (340)
T d1t9ka_           2 KTKTMEWSGNSLKLLDQRKLPFIEEYVECKTHEEVAHAIKEMIVRGAPAIGVAAAFGYVLGLRDYK--TGS---LTDWMK   76 (340)
T ss_dssp             BCSSEEECSSCEEEECTTTTTTCCCEEEECSHHHHHHHHHHTSSCSHHHHHHHHHHHHHHHHHTCC--SSC---HHHHHH
T ss_pred             cceEEEEECCEEEEEECCCCCCeEEEEEeCCHHHHHHHhHhCccCCchHHHHHHHHHHHHHHHhcc--cCc---hHHHHH
Confidence            368999999999999999999999999999999999999999999999999999999999998862  333   345688


Q ss_pred             HHHHHHHhCCCCcccHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhcCCCcE
Q 017293           92 NKLEYLVSSRPTAVNLSDAAAKLKEIISKAAATASEANSVFQAYIEAAEIMLKDDVATNKAIGSYGASFLQNQLKNSKFS  171 (374)
Q Consensus        92 ~~~~~L~~~RPt~v~l~nai~~~~~~i~~~~~~~~~~~e~~~~l~~~~~~~~~e~~~a~~~I~~~~~~~i~~~~~~~~~~  171 (374)
                      +..++|.++|||++||.|++++++..+.+.    .+.++.++.+++.++.+.+++..++++|+++|+++|.     +|++
T Consensus        77 ~~~~~L~saRPTAVNL~wAv~r~~~~l~~~----~~~e~~~~~l~~~a~~i~~ed~~~~~~Ig~~g~~lI~-----~g~~  147 (340)
T d1t9ka_          77 QVKETLARTRPTAVNLFWALNRMEKVFFEN----ADRENLFEILENEALKMAYEDIEVNKAIGKNGAQLIK-----DGST  147 (340)
T ss_dssp             HHHHHHHTSCSSCTHHHHHHHHHHHHHHTT----TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC-----TTEE
T ss_pred             HHHHHHHhcCchhhHHHHHHHHHHHhhhcc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----CCCE
Confidence            999999999999999999999998877543    3456678889999999999999999999999999999     8999


Q ss_pred             EEEecCCCcccccccccHHHHHHHHHHCCCeeEEEEecCCCCCcchHhHHHHHhhCCCCeEEEcchHHHHHHhcCCCCEE
Q 017293          172 VLTHCNTGSLATAGYGTALGVIRALHSEGVLERAYCSETRPFNQGSRLTAFELVHDRIPATLIADSAAAALMKDGRVSAV  251 (374)
Q Consensus       172 ILT~~~sg~lat~g~~tv~~~l~~a~~~g~~~~V~v~EsrP~~eG~~l~a~~L~~~GI~vtlI~Dsav~~~m~~~~vd~V  251 (374)
                      ||||||||+|||+||||++++|+.|+++|++|+|||+||||++||.||++|+|.+.|||||+|+|++++|+|++++||+|
T Consensus       148 ILThcnsg~lAt~~~gta~~~~~~a~~~g~~~~v~v~EsrP~~qG~~lta~~L~~~gi~~t~I~Dsa~~~~m~~~~vd~V  227 (340)
T d1t9ka_         148 ILTHCNAGALATVDYGTALGVIRAAVESGKRIRVFADETRPYLQGARLTAWELMKDGIEVYVITDNMAGWLMKRGLIDAV  227 (340)
T ss_dssp             EEECSCCSGGGSSSSCSHHHHHHHHHHTTCCEEEEEECCTTTTHHHHTHHHHHHTTTCEEEEECGGGHHHHHHTTCCSEE
T ss_pred             EEEecCCccceeeechhhhhHHHHHhhcCceEEEEEecCCCCCccHHHHHHHHHhcCCceEEEecchhhhhhhhcccceE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999988889999


Q ss_pred             EEcceeeecCCCeecccccHHHHHHHHhcCCeEEEeccCccccCCCCCCCccccccCCcccceeccCCCCccccCCCcee
Q 017293          252 IVGADRVAANGDTANKIGTYSLALCAKFHNILFYVAAPLTSIDLTLSSGQEIVIEERSAKELLCSRGGLGEQVAASGISV  331 (374)
Q Consensus       252 lvGAd~i~~nG~v~nkiGT~~lA~~Ak~~~vPvyV~a~~~K~~~~~~~~~~i~ie~r~~~ev~~~~~~~~~~~~~~~~~v  331 (374)
                      |+|||+|++||+++||+|||++|++||+|+|||||+||+|||++.++.+.++++|+|+|+|+...+   |..+.++++++
T Consensus       228 ivGad~v~~nG~v~nkiGT~~~A~~A~~~~vP~~V~a~~~k~~~~~~~~~~~~ie~r~~~ev~~~~---~~~~~~~~~~v  304 (340)
T d1t9ka_         228 VVGADRIALNGDTANKIGTYSLAVLAKRNNIPFYVAAPVSTIDPTIRSGEEIPIEERRPEEVTHCG---GNRIAPEGVKV  304 (340)
T ss_dssp             EECCSEEETTSCEEEETTHHHHHHHHHHTTCCEEEECCGGGEETTCSSGGGSCCCBCCTHHHHEET---TEECSCTTCEE
T ss_pred             EecccccccCCCEEEcccHHHHHHHHHhcCCcEEEEeeccCcCCCCCCcCcccccccCHHHccccC---CcEeCCCCCCe
Confidence            999999999999999999999999999999999999999999999999999999999999999877   66678899999


Q ss_pred             ecceeeecCCCCccEEEeCCCCcccCCCcCccccHHHHHh
Q 017293          332 WNPAFDVTPANLITGIITEKQGVVTKAGADDAFDIKDFIQ  371 (374)
Q Consensus       332 ~np~fD~tP~~lIt~iITE~~Gi~~p~~~~~~~~~~~~~~  371 (374)
                      +||+||+|||+|||+||||. |+++|+ +.  ..|++|+.
T Consensus       305 ~np~fD~tP~~lIt~iiTe~-G~~~Ps-~~--~~l~~~~~  340 (340)
T d1t9ka_         305 LNPAFDVTENTLITAIITEK-GVIRPP-FE--ENIKKILE  340 (340)
T ss_dssp             CCBSEEEECGGGCSEEEETT-EEECSS-HH--HHHHHHHC
T ss_pred             eCcCccCCCHHHCCEEECCC-cccCCC-CH--HHHHHHhC
Confidence            99999999999999999999 999998 54  77888763
>d2a0ua1 c.124.1.5 (A:10-383) Initiation factor 2b {Leishmania major [TaxId: 5664]} Back     information, alignment and structure
>d1t5oa_ c.124.1.5 (A:) Putative eIF-2B delta-subunit {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1vb5a_ c.124.1.5 (A:) Putative eIF-2B subunit 2-like protein PH0440 {Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1m0sa1 c.124.1.4 (A:1-126,A:199-219) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1uj4a1 c.124.1.4 (A:3-131,A:206-227) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1lk5a1 c.124.1.4 (A:1-130,A:211-229) D-ribose-5-phosphate isomerase (RpiA), catalytic domain {Archaeon Pyrococcus horikoshii [TaxId: 53953]} Back     information, alignment and structure
>d1a9xa2 c.24.1.1 (A:936-1073) Carbamoyl phosphate synthetase, large subunit allosteric, C-terminal domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure