Citrus Sinensis ID: 017309

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
ccccccccccHHHHHHHHHHcccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHcHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccccccccccccHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHEEEEcEEccccccccccccccccHHHHHHHHHHHcccccccHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHccccccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccccccc
cccccccccHcccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHHcHHccEEEHHHHHHHHHHHHEEEEEEcHHHHHHHcccccccccccccccccEEEEEEEEEEEHHHHcHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccHHHHHHHHHHHHccccccHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHHHHHEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
mdakypflseYEKEELDRISRTRSSLSEKISFHKqltgelpiahgcsftQTIFNGINVMAGvgllstpytvkeaGWASLVVLLLFAVVCCYTASLMRYCFEskegittypdigeaaFGKYGRLLISVLLYTELYSYCVEFIILegdnltslfpgasldwpgfqldsthLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLgtiegigfhptgqvvkwsgmpfaigIYGFcysghsvfpniyqsmADKTKFTKALITCFALCVLIYGGVAVMGFLMfgqgtlsqitlnmpphafASKVAVWTTVINPFTKYALLMNPLARSIEELlpagisnnyWCFILLRTALVFSSVCAAFLlpffskfgt
mdakypflseyekeeldrISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASlvvlllfavvCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
*******************************FHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSK***
************************************************TQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
*******************************************HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooo
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MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSVCAAFLLPFFSKFGT
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query373 2.2.26 [Sep-21-2011]
P47082602 Vacuolar amino acid trans yes no 0.745 0.461 0.336 2e-32
P34579486 Vesicular GABA transporte yes no 0.731 0.561 0.235 4e-15
Q6PF45518 Vesicular inhibitory amin N/A no 0.729 0.525 0.249 1e-14
Q6DIV6518 Vesicular inhibitory amin yes no 0.632 0.455 0.252 1e-13
Q9H598525 Vesicular inhibitory amin yes no 0.640 0.455 0.248 2e-12
O35458525 Vesicular inhibitory amin yes no 0.640 0.455 0.248 3e-12
Q95KE2525 Vesicular inhibitory amin N/A no 0.640 0.455 0.248 3e-12
O35633525 Vesicular inhibitory amin yes no 0.640 0.455 0.248 4e-12
Q4KL91522 Proton-coupled amino acid N/A no 0.713 0.509 0.237 3e-10
Q5RC98 1121 Putative sodium-coupled n no no 0.828 0.275 0.235 4e-10
>sp|P47082|AVT1_YEAST Vacuolar amino acid transporter 1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=AVT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  140 bits (352), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/297 (33%), Positives = 152/297 (51%), Gaps = 19/297 (6%)

Query: 50  QTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFESKEGITT 108
           QTIFN INV+ G+GLL+ P  +K AGW   L +L +FA+    TA L+  C ++   + +
Sbjct: 212 QTIFNSINVLIGIGLLALPLGLKYAGWVIGLTMLAIFALATFCTAELLSRCLDTDPTLIS 271

Query: 109 YPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTH 168
           Y D+G AAFG  GR LIS L   +L    V  +IL GD+L +LFP  S  +  F++ S  
Sbjct: 272 YADLGYAAFGTKGRALISALFTLDLLGSGVSLVILFGDSLNALFPQYSTTF--FKIVS-- 327

Query: 169 LFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQV--- 225
            F I+T  + +P   L ++ ++  LS TG V  ++I  C L+  +  G   +P       
Sbjct: 328 -FFIVTPPVFIPLSVLSNISLLGILSTTGTV--LVICCCGLYKSSSPGSLVNPMETSMWP 384

Query: 226 VKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFL 285
           +    +  +IG+   C+ GH+VFPN+   M    KF   L T + +  +   G AV+GFL
Sbjct: 385 IDLKHLCLSIGLLSACWGGHAVFPNLKTDMRHPDKFKDCLKTTYKITSVTDIGTAVIGFL 444

Query: 286 MFGQGTLSQITLNM------PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELL 336
           MFG     +IT N+      P   +    A+ T +  P  K  L   P+   ++ L+
Sbjct: 445 MFGNLVKDEITKNVLLTEGYPKFVYGLISALMTII--PIAKTPLNARPIVSVLDVLM 499
Required for the vacuolar uptake of large neutral amino acids including tyrosine, glutamine, asparagine, isoleucine and leucine. Requires ATP for function.
Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)
>sp|P34579|UNC47_CAEEL Vesicular GABA transporter OS=Caenorhabditis elegans GN=unc-47 PE=1 SV=2 Back     alignment and function description
>sp|Q6PF45|VIAAT_XENLA Vesicular inhibitory amino acid transporter OS=Xenopus laevis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q6DIV6|VIAAT_XENTR Vesicular inhibitory amino acid transporter OS=Xenopus tropicalis GN=slc32a1 PE=2 SV=1 Back     alignment and function description
>sp|Q9H598|VIAAT_HUMAN Vesicular inhibitory amino acid transporter OS=Homo sapiens GN=SLC32A1 PE=1 SV=2 Back     alignment and function description
>sp|O35458|VIAAT_RAT Vesicular inhibitory amino acid transporter OS=Rattus norvegicus GN=Slc32a1 PE=1 SV=1 Back     alignment and function description
>sp|Q95KE2|VIAAT_MACFA Vesicular inhibitory amino acid transporter OS=Macaca fascicularis GN=SLC32A1 PE=2 SV=1 Back     alignment and function description
>sp|O35633|VIAAT_MOUSE Vesicular inhibitory amino acid transporter OS=Mus musculus GN=Slc32a1 PE=1 SV=3 Back     alignment and function description
>sp|Q4KL91|S36A4_XENLA Proton-coupled amino acid transporter 4 OS=Xenopus laevis GN=slc36a4 PE=2 SV=1 Back     alignment and function description
>sp|Q5RC98|S38AA_PONAB Putative sodium-coupled neutral amino acid transporter 10 OS=Pongo abelii GN=SLC38A10 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
359482241 537 PREDICTED: vacuolar amino acid transport 0.986 0.685 0.784 1e-175
449437719 539 PREDICTED: vacuolar amino acid transport 0.986 0.682 0.779 1e-168
297827755 534 amino acid transporter family protein [A 0.973 0.679 0.764 1e-161
356498515 531 PREDICTED: vacuolar amino acid transport 0.959 0.674 0.733 1e-160
18405629 536 transmembrane amino acid transporter-lik 0.973 0.677 0.753 1e-159
356537361 548 PREDICTED: vacuolar amino acid transport 0.967 0.658 0.725 1e-158
356570419 546 PREDICTED: vacuolar amino acid transport 0.975 0.666 0.723 1e-157
23397299407 unknown protein [Arabidopsis thaliana] 0.906 0.830 0.787 1e-154
356495667 534 PREDICTED: vacuolar amino acid transport 0.967 0.676 0.717 1e-154
297739941452 unnamed protein product [Vitis vinifera] 0.860 0.710 0.772 1e-150
>gi|359482241|ref|XP_002266914.2| PREDICTED: vacuolar amino acid transporter 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  620 bits (1600), Expect = e-175,   Method: Compositional matrix adjust.
 Identities = 292/372 (78%), Positives = 334/372 (89%), Gaps = 4/372 (1%)

Query: 1   MDAKYPFLSE----YEKEELDRISRTRSSLSEKISFHKQLTGELPIAHGCSFTQTIFNGI 56
           +D K P L+E    Y+KE+ DRISRT+ SLSEK SFH+QLTGELPI++GCSFTQT+FNG+
Sbjct: 100 LDGKTPLLTEQEKNYQKEDTDRISRTQLSLSEKASFHEQLTGELPISYGCSFTQTVFNGV 159

Query: 57  NVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAA 116
           NV+AG+GLLSTPY VKEAGWASL VL+LFAVVCCYTASL+RYC ESKEGI TYPDIGEAA
Sbjct: 160 NVLAGIGLLSTPYAVKEAGWASLAVLVLFAVVCCYTASLLRYCLESKEGIITYPDIGEAA 219

Query: 117 FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTAL 176
           FG+YGRL +S +LYTELYSYCVEFIILEGDNLT LFPGASL+W GFQLDS HLFGILTAL
Sbjct: 220 FGRYGRLFVSFVLYTELYSYCVEFIILEGDNLTRLFPGASLNWGGFQLDSLHLFGILTAL 279

Query: 177 IVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIG 236
           IVLPT+WLRDLRVIS LSA GV+AT+LIV+ V+F+G   GIGFH TG++V W G+PF+IG
Sbjct: 280 IVLPTVWLRDLRVISCLSAGGVLATVLIVVSVIFVGITAGIGFHQTGKLVNWGGIPFSIG 339

Query: 237 IYGFCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQIT 296
           +YGFC+SGH+VFPNIYQSMADKTKF+KALI    LCV+IYGG+A++GFLMFGQGT+SQIT
Sbjct: 340 VYGFCFSGHTVFPNIYQSMADKTKFSKALIVSILLCVIIYGGIAIVGFLMFGQGTMSQIT 399

Query: 297 LNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVF 356
           LN+P H FASK+A+WTTVINPFTKYALLMNPLARSIEELLP  ISN++WCFILLRTALV 
Sbjct: 400 LNIPRHVFASKIALWTTVINPFTKYALLMNPLARSIEELLPVRISNSFWCFILLRTALVI 459

Query: 357 SSVCAAFLLPFF 368
           SSVC AFLLPFF
Sbjct: 460 SSVCVAFLLPFF 471

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|449437719|ref|XP_004136638.1| PREDICTED: vacuolar amino acid transporter 1-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|297827755|ref|XP_002881760.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] gi|297327599|gb|EFH58019.1| amino acid transporter family protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356498515|ref|XP_003518096.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|18405629|ref|NP_030664.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] gi|14532708|gb|AAK64155.1| unknown protein [Arabidopsis thaliana] gi|19310729|gb|AAL85095.1| unknown protein [Arabidopsis thaliana] gi|20197120|gb|AAD11993.2| expressed protein [Arabidopsis thaliana] gi|330254848|gb|AEC09942.1| transmembrane amino acid transporter-like protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356537361|ref|XP_003537196.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|356570419|ref|XP_003553385.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|23397299|gb|AAN31931.1| unknown protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|356495667|ref|XP_003516696.1| PREDICTED: vacuolar amino acid transporter 1-like [Glycine max] Back     alignment and taxonomy information
>gi|297739941|emb|CBI30123.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
TAIR|locus:2063255536 AT2G41190 [Arabidopsis thalian 0.973 0.677 0.734 1.6e-143
TAIR|locus:2056118550 AT2G39130 [Arabidopsis thalian 0.943 0.64 0.507 2.7e-100
TAIR|locus:2082652546 AT3G54830 "AT3G54830" [Arabido 0.965 0.659 0.483 6.1e-94
TAIR|locus:2185158550 AT5G02180 [Arabidopsis thalian 0.884 0.6 0.522 1.5e-92
TAIR|locus:2185143526 AT5G02170 [Arabidopsis thalian 0.954 0.676 0.487 9.3e-91
TAIR|locus:2083549528 AT3G09340 "AT3G09340" [Arabido 0.965 0.681 0.452 8e-85
TAIR|locus:2083529524 AT3G09330 "AT3G09330" [Arabido 0.965 0.687 0.455 5.6e-84
TAIR|locus:2087012405 AT3G28960 "AT3G28960" [Arabido 0.863 0.795 0.425 1.9e-76
TAIR|locus:2150911423 AT5G15240 [Arabidopsis thalian 0.914 0.806 0.397 1.8e-71
TAIR|locus:2149045426 AT5G16740 [Arabidopsis thalian 0.892 0.781 0.340 1.5e-51
TAIR|locus:2063255 AT2G41190 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1403 (498.9 bits), Expect = 1.6e-143, P = 1.6e-143
 Identities = 271/369 (73%), Positives = 306/369 (82%)

Query:     1 MDAKYPFLSEYEKEELDRISRTRSSLSEKISFHKQLTGELPIA-HGCSFTQTIFNGINVM 59
             +++K P L E   ++ D+ S T+S+ S K SF +    ELPI  +GCS  QTIFN INVM
Sbjct:   106 VESKAPLLPE-RHDDSDKASATQSAWSHKGSFAE----ELPIGGYGCSVIQTIFNAINVM 160

Query:    60 AGVGLLSTPYTVKEAGWASXXXXXXXXXXCCYTASLMRYCFESKEGITTYPDIGEAAFGK 119
             AGVGLLSTPYTVKEAGWAS          CCYTA+LM+ CFE+K GI TYPDIGEAAFGK
Sbjct:   161 AGVGLLSTPYTVKEAGWASMVILLLFAVICCYTATLMKDCFENKTGIITYPDIGEAAFGK 220

Query:   120 YGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVL 179
             YGR+LI +LLYTELYSYCVEFIILEGDNLT LFPG SLD  GF+LDS HLFGILTALIVL
Sbjct:   221 YGRILICMLLYTELYSYCVEFIILEGDNLTGLFPGTSLDLLGFRLDSKHLFGILTALIVL 280

Query:   180 PTIWLRDLRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYG 239
             PT+WL+DLR+ISYLSA GV+AT LI + V FLGT  GIGFH TGQ VKW+G+PFAIGIYG
Sbjct:   281 PTVWLKDLRIISYLSAGGVIATALIAVSVFFLGTTGGIGFHHTGQAVKWNGIPFAIGIYG 340

Query:   240 FCYSGHSVFPNIYQSMADKTKFTKALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNM 299
             FCYSGHSVFPNIYQSMADKTKF KA+ITCF +CVL+YGGVA+MG+LMFG+ TLSQITLNM
Sbjct:   341 FCYSGHSVFPNIYQSMADKTKFNKAVITCFIICVLLYGGVAIMGYLMFGEATLSQITLNM 400

Query:   300 PPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAGISNNYWCFILLRTALVFSSV 359
             P   F SKVA WTTV++PFTKYALLMNPLARSIEELLP  +S N WCF+LLRTALV SSV
Sbjct:   401 PQDQFFSKVAQWTTVVSPFTKYALLMNPLARSIEELLPERMSENIWCFLLLRTALVASSV 460

Query:   360 CAAFLLPFF 368
             C+AFL+PFF
Sbjct:   461 CSAFLIPFF 469
GO:0005886 "plasma membrane" evidence=ISM
GO:0006865 "amino acid transport" evidence=ISS
GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS
GO:0016020 "membrane" evidence=ISS
GO:0005774 "vacuolar membrane" evidence=IDA
TAIR|locus:2056118 AT2G39130 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2082652 AT3G54830 "AT3G54830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185158 AT5G02180 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2185143 AT5G02170 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083549 AT3G09340 "AT3G09340" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2083529 AT3G09330 "AT3G09330" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2087012 AT3G28960 "AT3G28960" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2150911 AT5G15240 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2149045 AT5G16740 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
pfam01490406 pfam01490, Aa_trans, Transmembrane amino acid tran 6e-44
COG0814415 COG0814, SdaC, Amino acid permeases [Amino acid tr 9e-20
PTZ00206467 PTZ00206, PTZ00206, amino acid transporter; Provis 2e-08
TIGR00837381 TIGR00837, araaP, aromatic amino acid transport pr 9e-07
pfam03222393 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine perme 3e-05
>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein Back     alignment and domain information 
 Score =  156 bits (396), Expect = 6e-44
 Identities = 93/348 (26%), Positives = 161/348 (46%), Gaps = 24/348 (6%)

Query: 44  HGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGW-ASLVVLLLFAVVCCYTASLMRYC--- 99
              S  Q +FN I  + G G+LS PY  K+ GW   L++L++  ++  YT  L+  C   
Sbjct: 1   GTISAWQAVFNLIKAIIGAGVLSLPYAFKQLGWIPGLILLVIVGLISLYTLHLLVQCSKY 60

Query: 100 --FESKEGITTYPDIGEAAFGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASL 157
                 +   +Y D+G   FG  G+LLI   +   L+  C+ ++I  GDNL ++F     
Sbjct: 61  VDKVKGKRRKSYGDLGYRLFGPKGKLLILFAILVNLFGVCISYLIFAGDNLPAIFDSFFD 120

Query: 158 DWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVATILIVLCVLFLGTI--- 214
                 +   + F I+  LI +P  ++ +L  +S LS    V+++ IV+ VL +  +   
Sbjct: 121 TCH---ISLVY-FIIIFGLIFIPLSFIPNLSALSILSLVAAVSSLYIVILVLSVAELGVL 176

Query: 215 --EGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSM---ADKTKFTKALITCF 269
             +G+G       +K + +  AIGI  F + GH+V   I  +M   +     TK L+T  
Sbjct: 177 TAQGVGSLGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKSPSKFKAMTKVLLTAI 236

Query: 270 ALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLA 329
            +  ++Y  V ++G+L FG      I LN+P   +   +A    V++    Y L   P+ 
Sbjct: 237 IIVTVLYILVGLVGYLAFGNNVKGNILLNLPKSDWLIDIANLLLVLHLLLSYPLQAFPIR 296

Query: 330 RSIEELLPAGISNNY------WCFILLRTALVFSSVCAAFLLPFFSKF 371
           + +E LL    ++           +++R+ LV  +   A  +PF   F
Sbjct: 297 QIVENLLFRKGASGKHNPKSKLLRVVIRSGLVVITYLIAISVPFLGDF 344

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406
>gnl|CDD|223884 COG0814, SdaC, Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|240313 PTZ00206, PTZ00206, amino acid transporter; Provisional Back     alignment and domain information
>gnl|CDD|233146 TIGR00837, araaP, aromatic amino acid transport protein Back     alignment and domain information
>gnl|CDD|112053 pfam03222, Trp_Tyr_perm, Tryptophan/tyrosine permease family Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 373
KOG1304449 consensus Amino acid transporters [Amino acid tran 100.0
PTZ00206467 amino acid transporter; Provisional 100.0
KOG1303437 consensus Amino acid transporters [Amino acid tran 100.0
PF01490409 Aa_trans: Transmembrane amino acid transporter pro 100.0
PLN03074473 auxin influx permease; Provisional 100.0
KOG1305411 consensus Amino acid transporter protein [Amino ac 100.0
KOG4303524 consensus Vesicular inhibitory amino acid transpor 100.0
COG0814415 SdaC Amino acid permeases [Amino acid transport an 99.97
TIGR00837381 araaP aromatic amino acid transport protein. aroma 99.9
PF03222394 Trp_Tyr_perm: Tryptophan/tyrosine permease family; 99.9
PRK10483414 tryptophan permease; Provisional 99.89
PRK09664415 tryptophan permease TnaB; Provisional 99.88
PRK15132403 tyrosine transporter TyrP; Provisional 99.88
TIGR00814397 stp serine transporter. The HAAAP family includes 99.82
PRK13629443 threonine/serine transporter TdcC; Provisional 99.81
TIGR00912359 2A0309 spore germination protein (amino acid perme 99.72
PRK10655 438 potE putrescine transporter; Provisional 99.69
PRK10435 435 cadB lysine/cadaverine antiporter; Provisional 99.69
TIGR01773 452 GABAperm gamma-aminobutyrate permease. GabP is hig 99.68
TIGR00906 557 2A0303 cationic amino acid transport permease. 99.67
TIGR00930 953 2a30 K-Cl cotransporter. 99.67
PRK10249 458 phenylalanine transporter; Provisional 99.65
PRK11021410 putative transporter; Provisional 99.65
PRK10644 445 arginine:agmatin antiporter; Provisional 99.64
PRK11049 469 D-alanine/D-serine/glycine permease; Provisional 99.63
PRK11387 471 S-methylmethionine transporter; Provisional 99.63
PRK15049 499 L-asparagine permease; Provisional 99.63
TIGR00905 473 2A0302 transporter, basic amino acid/polyamine ant 99.62
TIGR00909429 2A0306 amino acid transporter. 99.62
TIGR03810 468 arg_ornith_anti arginine/ornithine antiporter. Mem 99.6
PRK10836 489 lysine transporter; Provisional 99.59
PRK10746 461 putative transport protein YifK; Provisional 99.59
PF03845320 Spore_permease: Spore germination protein; InterPr 99.59
PRK10580 457 proY putative proline-specific permease; Provision 99.58
PRK10238 456 aromatic amino acid transporter; Provisional 99.56
COG1113462 AnsP Gamma-aminobutyrate permease and related perm 99.55
KOG1287 479 consensus Amino acid transporters [Amino acid tran 99.53
TIGR00908 442 2A0305 ethanolamine permease. The three genes used 99.52
PF13520426 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G 99.51
TIGR00913 478 2A0310 amino acid permease (yeast). 99.51
PRK11357 445 frlA putative fructoselysine transporter; Provisio 99.49
PRK10197 446 gamma-aminobutyrate transporter; Provisional 99.48
TIGR00911 501 2A0308 L-type amino acid transporter. 99.48
COG0531 466 PotE Amino acid transporters [Amino acid transport 99.4
KOG1286 554 consensus Amino acid transporters [Amino acid tran 99.37
COG0833 541 LysP Amino acid transporters [Amino acid transport 99.35
TIGR03428 475 ureacarb_perm permease, urea carboxylase system. A 99.3
PRK15238 496 inner membrane transporter YjeM; Provisional 99.2
TIGR00907 482 2A0304 amino acid permease (GABA permease). 99.18
KOG3832319 consensus Predicted amino acid transporter [Genera 99.14
PF00324 478 AA_permease: Amino acid permease; InterPro: IPR004 99.12
TIGR03813 474 put_Glu_GABA_T putative glutamate/gamma-aminobutyr 99.09
TIGR00910 507 2A0307_GadC glutamate:gamma-aminobutyrate antiport 99.06
COG3949349 Uncharacterized membrane protein [Function unknown 98.91
TIGR00800442 ncs1 NCS1 nucleoside transporter family. The NCS1 98.44
COG1457 442 CodB Purine-cytosine permease and related proteins 98.4
TIGR02119471 panF sodium/pantothenate symporter. Pantothenate ( 98.39
COG0591 493 PutP Na+/proline symporter [Amino acid transport a 98.29
PRK11375 484 allantoin permease; Provisional 98.29
TIGR00813407 sss transporter, SSS family. have different number 98.28
PRK09442 483 panF sodium/panthothenate symporter; Provisional 98.26
KOG1289 550 consensus Amino acid transporters [Amino acid tran 98.21
PRK12488 549 acetate permease; Provisional 98.19
TIGR02358386 thia_cytX probable hydroxymethylpyrimidine transpo 98.18
TIGR00835425 agcS amino acid carrier protein. Members of the AG 98.12
PF00474406 SSF: Sodium:solute symporter family; InterPro: IPR 98.07
PRK09395 551 actP acetate permease; Provisional 97.93
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 97.89
PRK11017404 codB cytosine permease; Provisional 97.83
TIGR02711 549 symport_actP cation/acetate symporter ActP. Member 97.74
PF02133440 Transp_cyt_pur: Permease for cytosine/purines, ura 97.65
PRK15419 502 proline:sodium symporter PutP; Provisional 97.64
TIGR03648 552 Na_symport_lg probable sodium:solute symporter, VC 97.57
TIGR02121 487 Na_Pro_sym sodium/proline symporter. This family c 97.48
PF02554376 CstA: Carbon starvation protein CstA; InterPro: IP 97.45
COG1953 497 FUI1 Cytosine/uracil/thiamine/allantoin permeases 97.34
KOG1288 945 consensus Amino acid transporters [Amino acid tran 97.27
KOG2083 643 consensus Na+/K+ symporter [Inorganic ion transpor 97.11
PRK10484 523 putative transporter; Provisional 97.06
COG0733439 Na+-dependent transporters of the SNF family [Gene 97.0
PF00209 523 SNF: Sodium:neurotransmitter symporter family; Int 96.84
COG1966 575 CstA Carbon starvation protein, predicted membrane 96.62
PF01235416 Na_Ala_symp: Sodium:alanine symporter family; Inte 96.41
PRK15015 701 carbon starvation protein A; Provisional 96.32
TIGR00796378 livcs branched-chain amino acid uptake carrier. tr 95.62
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.61
PHA02764399 hypothetical protein; Provisional 95.54
PF05525427 Branch_AA_trans: Branched-chain amino acid transpo 95.4
COG1115452 AlsT Na+/alanine symporter [Amino acid transport a 95.24
COG4147 529 DhlC Predicted symporter [General function predict 94.99
COG1114431 BrnQ Branched-chain amino acid permeases [Amino ac 93.55
PRK15433439 branched-chain amino acid transport system 2 carri 93.12
COG1914416 MntH Mn2+ and Fe2+ transporters of the NRAMP famil 92.91
PF02028485 BCCT: BCCT family transporter; InterPro: IPR000060 92.69
PRK00701439 manganese transport protein MntH; Reviewed 92.11
PLN02680232 carbon-monoxide oxygenase 91.84
KOG3660 629 consensus Sodium-neurotransmitter symporter [Signa 91.38
KOG2082 1075 consensus K+/Cl- cotransporter KCC1 and related tr 91.36
cd08762179 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYB 90.32
PRK15433439 branched-chain amino acid transport system 2 carri 88.89
PF01566358 Nramp: Natural resistance-associated macrophage pr 88.47
KOG2466 572 consensus Uridine permease/thiamine transporter/al 86.28
cd08764214 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cyt 84.9
KOG2349 585 consensus Na+:iodide/myo-inositol/multivitamin sym 84.27
KOG1289550 consensus Amino acid transporters [Amino acid tran 82.55
PLN02810231 carbon-monoxide oxygenase 81.33
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=1.1e-50  Score=373.65  Aligned_cols=325  Identities=23%  Similarity=0.357  Sum_probs=285.0

Q ss_pred             CCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHHHHHHhhh-----hCCCCCChHHHHHHh
Q 017309           43 AHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWA-SLVVLLLFAVVCCYTASLMRYCFE-----SKEGITTYPDIGEAA  116 (373)
Q Consensus        43 ~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~~l~~~~~-----~~~~~~~y~~l~~~~  116 (373)
                      ++..|..++..|+.|.++|+|+|++|++|+++|++ |.+..+++++++.||++.+++|..     +.....+|.+.++.+
T Consensus        44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a  123 (449)
T KOG1304|consen   44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA  123 (449)
T ss_pred             CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence            44689999999999999999999999999999999 999999999999999999999963     123346777776654


Q ss_pred             ----------cCcchhhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccC
Q 017309          117 ----------FGKYGRLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRD  186 (373)
Q Consensus       117 ----------~G~~~~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~  186 (373)
                                +||++|.+++..+.++++|.|++|+++++++++++.+...    .... +...++++.....++++++|+
T Consensus       124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~~----~~~~-s~~~~i~~~~~~~lll~~Ir~  198 (449)
T KOG1304|consen  124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEHS----PGVL-SVRLYILIQLPPLLLLNLIRN  198 (449)
T ss_pred             HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhccC----CCCc-cHHHHHHHHHHHHHHHHHHHh
Confidence                      4889999999999999999999999999999999987322    1122 356788888999999999999


Q ss_pred             CchhhHHHHHHHHHHHHHHHhhheeccccCcccCCCCccccccchhhhhhhHhhhcccceehhhHhhhccCchhhH---H
Q 017309          187 LRVISYLSATGVVATILIVLCVLFLGTIEGIGFHPTGQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKTKFT---K  263 (373)
Q Consensus       187 l~~l~~~s~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~~~~---~  263 (373)
                      ++.++.+|.++.++.++.++.+.++...+.++.++.+...++++++..+|+.+|||+|+.++.|++++||+|++++   +
T Consensus       199 Lk~Lsp~Sl~Anv~~~~g~~ii~~y~~~~~~~~~~~~~~~~~~~~~lf~GtaifafEGig~VLPlEn~Mk~P~~F~g~~g  278 (449)
T KOG1304|consen  199 LKILSPFSLFANVFILVGLAIIMYYLVQDLPPTSDLPAVTGWSGLPLFFGTAIFAFEGIGMVLPLENSMKKPQKFPGPFG  278 (449)
T ss_pred             hHHhhHHHHHHHHHHHHHHHHHHHHHHhccCCccccccccchhhhHHHHHHHHHHhccceEEEehhhcccChhhcCCccc
Confidence            9999999999999988887777777766666666666667789999999999999999999999999999999999   9


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhhcCCCchHHHHHHHHHHHHHHHHhhhhhhchhHHHHHHHcCCC--CC
Q 017309          264 ALITCFALCVLIYGGVAVMGFLMFGQGTLSQITLNMPPHAFASKVAVWTTVINPFTKYALLMNPLARSIEELLPAG--IS  341 (373)
Q Consensus       264 ~i~~s~~~~~~~Y~~~g~~gy~~fg~~~~~~il~n~~~~~~~~~i~~~~~~i~~~~s~pl~~~~~~~~~~~~~~~~--~~  341 (373)
                      ++..++.+++++|+.+|++||++||+++++.|++|+|+ ++.....++++++.+++|||+|++|..+.+|+.+.++  +.
T Consensus       279 VLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~-~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~~  357 (449)
T KOG1304|consen  279 VLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ-EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSEN  357 (449)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc-cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCcc
Confidence            99999999999999999999999999999999999998 7777789999999999999999999999999876554  23


Q ss_pred             cchhhHHHHHHHHHHHHHHHHHhcCC----cccCCC
Q 017309          342 NNYWCFILLRTALVFSSVCAAFLLPF----FSKFGT  373 (373)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~iA~~vp~----~~~vg~  373 (373)
                      +.++..+.+|..+++++..+|+.+|+    +++|||
T Consensus       358 ~~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs  393 (449)
T KOG1304|consen  358 RKKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGS  393 (449)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHH
Confidence            35678899999999999999999995    455554

>PTZ00206 amino acid transporter; Provisional Back     alignment and domain information
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR) Back     alignment and domain information
>PLN03074 auxin influx permease; Provisional Back     alignment and domain information
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism] Back     alignment and domain information
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms] Back     alignment and domain information
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00837 araaP aromatic amino acid transport protein Back     alignment and domain information
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10483 tryptophan permease; Provisional Back     alignment and domain information
>PRK09664 tryptophan permease TnaB; Provisional Back     alignment and domain information
>PRK15132 tyrosine transporter TyrP; Provisional Back     alignment and domain information
>TIGR00814 stp serine transporter Back     alignment and domain information
>PRK13629 threonine/serine transporter TdcC; Provisional Back     alignment and domain information
>TIGR00912 2A0309 spore germination protein (amino acid permease) Back     alignment and domain information
>PRK10655 potE putrescine transporter; Provisional Back     alignment and domain information
>PRK10435 cadB lysine/cadaverine antiporter; Provisional Back     alignment and domain information
>TIGR01773 GABAperm gamma-aminobutyrate permease Back     alignment and domain information
>TIGR00906 2A0303 cationic amino acid transport permease Back     alignment and domain information
>TIGR00930 2a30 K-Cl cotransporter Back     alignment and domain information
>PRK10249 phenylalanine transporter; Provisional Back     alignment and domain information
>PRK11021 putative transporter; Provisional Back     alignment and domain information
>PRK10644 arginine:agmatin antiporter; Provisional Back     alignment and domain information
>PRK11049 D-alanine/D-serine/glycine permease; Provisional Back     alignment and domain information
>PRK11387 S-methylmethionine transporter; Provisional Back     alignment and domain information
>PRK15049 L-asparagine permease; Provisional Back     alignment and domain information
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family Back     alignment and domain information
>TIGR00909 2A0306 amino acid transporter Back     alignment and domain information
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter Back     alignment and domain information
>PRK10836 lysine transporter; Provisional Back     alignment and domain information
>PRK10746 putative transport protein YifK; Provisional Back     alignment and domain information
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>PRK10580 proY putative proline-specific permease; Provisional Back     alignment and domain information
>PRK10238 aromatic amino acid transporter; Provisional Back     alignment and domain information
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00908 2A0305 ethanolamine permease Back     alignment and domain information
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A Back     alignment and domain information
>TIGR00913 2A0310 amino acid permease (yeast) Back     alignment and domain information
>PRK11357 frlA putative fructoselysine transporter; Provisional Back     alignment and domain information
>PRK10197 gamma-aminobutyrate transporter; Provisional Back     alignment and domain information
>TIGR00911 2A0308 L-type amino acid transporter Back     alignment and domain information
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>TIGR03428 ureacarb_perm permease, urea carboxylase system Back     alignment and domain information
>PRK15238 inner membrane transporter YjeM; Provisional Back     alignment and domain information
>TIGR00907 2A0304 amino acid permease (GABA permease) Back     alignment and domain information
>KOG3832 consensus Predicted amino acid transporter [General function prediction only] Back     alignment and domain information
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell Back     alignment and domain information
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter Back     alignment and domain information
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter Back     alignment and domain information
>COG3949 Uncharacterized membrane protein [Function unknown] Back     alignment and domain information
>TIGR00800 ncs1 NCS1 nucleoside transporter family Back     alignment and domain information
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism] Back     alignment and domain information
>TIGR02119 panF sodium/pantothenate symporter Back     alignment and domain information
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only] Back     alignment and domain information
>PRK11375 allantoin permease; Provisional Back     alignment and domain information
>TIGR00813 sss transporter, SSS family Back     alignment and domain information
>PRK09442 panF sodium/panthothenate symporter; Provisional Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PRK12488 acetate permease; Provisional Back     alignment and domain information
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX Back     alignment and domain information
>TIGR00835 agcS amino acid carrier protein Back     alignment and domain information
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells Back     alignment and domain information
>PRK09395 actP acetate permease; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PRK11017 codB cytosine permease; Provisional Back     alignment and domain information
>TIGR02711 symport_actP cation/acetate symporter ActP Back     alignment and domain information
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines Back     alignment and domain information
>PRK15419 proline:sodium symporter PutP; Provisional Back     alignment and domain information
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily Back     alignment and domain information
>TIGR02121 Na_Pro_sym sodium/proline symporter Back     alignment and domain information
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex Back     alignment and domain information
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism] Back     alignment and domain information
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10484 putative transporter; Provisional Back     alignment and domain information
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only] Back     alignment and domain information
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses Back     alignment and domain information
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms] Back     alignment and domain information
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups Back     alignment and domain information
>PRK15015 carbon starvation protein A; Provisional Back     alignment and domain information
>TIGR00796 livcs branched-chain amino acid uptake carrier Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>PHA02764 hypothetical protein; Provisional Back     alignment and domain information
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)) Back     alignment and domain information
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism] Back     alignment and domain information
>COG4147 DhlC Predicted symporter [General function prediction only] Back     alignment and domain information
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism] Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom Back     alignment and domain information
>PRK00701 manganese transport protein MntH; Reviewed Back     alignment and domain information
>PLN02680 carbon-monoxide oxygenase Back     alignment and domain information
>KOG3660 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms] Back     alignment and domain information
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd08762 Cyt_b561_CYBASC3 Vertebrate cytochrome b(561), CYBASC3 gene product Back     alignment and domain information
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional Back     alignment and domain information
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2 Back     alignment and domain information
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism] Back     alignment and domain information
>cd08764 Cyt_b561_CG1275_like Non-vertebrate eumetazoan cytochrome b(561) Back     alignment and domain information
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism] Back     alignment and domain information
>PLN02810 carbon-monoxide oxygenase Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
3l1l_A 445 Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC 99.75
3gia_A 444 Uncharacterized protein MJ0609; membrane protein, 99.66
4djk_A 511 Probable glutamate/gamma-aminobutyrate antiporter; 99.43
2jln_A 501 MHP1; hydantoin, transporter, membrane protein, nu 98.78
3dh4_A 530 Sodium/glucose cotransporter; membrane protein, sy 98.26
2xq2_A 593 Sodium/glucose cotransporter; transport protein, i 97.47
2a65_A 519 Leutaa, Na(+):neurotransmitter symporter (SNF fami 97.29
>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A Back     alignment and structure
Probab=99.75  E-value=4.3e-16  Score=149.47  Aligned_cols=242  Identities=10%  Similarity=0.109  Sum_probs=177.0

Q ss_pred             CCCCCCHHHHHHHHHHHHHhHhhhHHHHHHHhhcHHHHHHHHHHHHHHHHHHHHHHHhhhhCCCCCChHHHHHHhcCcch
Q 017309           42 IAHGCSFTQTIFNGINVMAGVGLLSTPYTVKEAGWASLVVLLLFAVVCCYTASLMRYCFESKEGITTYPDIGEAAFGKYG  121 (373)
Q Consensus        42 ~~~~~s~~~~~~~l~~~~iG~Gil~lP~~~~~~G~~g~i~~~~~~~~~~~~~~~l~~~~~~~~~~~~y~~l~~~~~G~~~  121 (373)
                      .+|+.|.++.++..+++++|+|++.+|...++.|..+++.+++.++........+.|...+.|+..+..+.+++.+||+.
T Consensus         6 ~~r~l~~~~~~~l~ig~~iG~Gif~~~~~~~~~G~~~~~~~li~~~~~~~~a~~~~el~~~~p~~Gg~y~~~~~~~G~~~   85 (445)
T 3l1l_A            6 DAHKVGLIPVTLMVSGAIMGSGVFLLPANLASTGGIAIYGWLVTIIGALGLSMVYAKMSFLDPSPGGSYAYARRCFGPFL   85 (445)
T ss_dssp             -CCCBCHHHHHHHHHHHHCSSHHHHHHHHHHHHCTHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTTTHHHHHHHHSCHHH
T ss_pred             CCCcccHHHHHHHHHHhHHhhhHHhhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCchhhHHhHcCChH
Confidence            35689999999999999999999999999888887688888889999999999999998888888899999999999999


Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCCCcccCchhHHHHHHHHHHHhhhcccCCchhhHHHHHHHHHH
Q 017309          122 RLLISVLLYTELYSYCVEFIILEGDNLTSLFPGASLDWPGFQLDSTHLFGILTALIVLPTIWLRDLRVISYLSATGVVAT  201 (373)
Q Consensus       122 ~~~~~i~~~~~~~g~~~~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~~pl~~~~~l~~l~~~s~~~~~~~  201 (373)
                      +++..+..++........+....++++..+++...     ..+  ......+...+.+-....++.+...+++.+.....
T Consensus        86 g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~--~~~~~~~~~~~~~~~in~~g~~~~~~~~~~~~~~~  158 (445)
T 3l1l_A           86 GYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPILK-----DPW--VLTITCVVVLWIFVLLNIVGPKMITRVQAVATVLA  158 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCGGGG-----SHH--HHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCcccc-----ccH--HHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHH
Confidence            99999999888877788888888888876654311     001  11122222222333344457777777776665554


Q ss_pred             HHHHHhhheeccc--cCcccCCC---CccccccchhhhhhhHhhhcccceehhhHhhhccCch-hhHHHHHHHHHHHHHH
Q 017309          202 ILIVLCVLFLGTI--EGIGFHPT---GQVVKWSGMPFAIGIYGFCYSGHSVFPNIYQSMADKT-KFTKALITCFALCVLI  275 (373)
Q Consensus       202 ~~~~~~i~~~~~~--~~~~~~~~---~~~~~~~~~~~~~~~~~faf~~~~~~~~i~~~m~~p~-~~~~~i~~s~~~~~~~  275 (373)
                      +...+.++.....  ++....+.   ....++.++..++....|+|.|.+......+|+|||+ +.+|++..+...+.++
T Consensus       159 i~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p~r~ip~a~~~~~~~~~~~  238 (445)
T 3l1l_A          159 LIPIVGIAVFGWFWFRGETYMAAWNVSGLGTFGAIQSTLNVTLWSFIGVESASVAAGVVKNPKRNVPIATIGGVLIAAVC  238 (445)
T ss_dssp             HHHHHHHHHTTSTTCCCCCCCCC-----------HHHHHHHHHHTTTTTTHHHHGGGGBSSHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhChhhcccccCccCCccHHHHHHHHHHHHHHHHhHHHHHHHHHHhcCccccccHHHHHHHHHHHHH
Confidence            4443333322211  11111111   1112355788899999999999999999999999996 6899999999999999


Q ss_pred             HHHHHHHHHHHhcCC
Q 017309          276 YGGVAVMGFLMFGQG  290 (373)
Q Consensus       276 Y~~~g~~gy~~fg~~  290 (373)
                      |+...+......+.+
T Consensus       239 y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          239 YVLSTTAIMGMIPNA  253 (445)
T ss_dssp             HHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHhcCCHH
Confidence            999998877777643
>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C Back     alignment and structure
>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A Back     alignment and structure
>2jln_A MHP1; hydantoin, transporter, membrane protein, nucleobase-cation-symport-1 family; 2.85A {Microbacterium liquefaciens} PDB: 2jlo_A* 2x79_A Back     alignment and structure
>3dh4_A Sodium/glucose cotransporter; membrane protein, symporter, sugar transport, SGLT, ION TRAN membrane, sodium transport, symport; HET: GAL; 2.70A {Vibrio parahaemolyticus} Back     alignment and structure
>2xq2_A Sodium/glucose cotransporter; transport protein, inverted repeats, LEUT-fold, galactose; 2.73A {Vibrio parahaemolyticus} PDB: 2xq2_B 2kpe_A Back     alignment and structure
>2a65_A Leutaa, Na(+):neurotransmitter symporter (SNF family); membrane protein, transport protein; HET: BOG; 1.65A {Aquifex aeolicus} SCOP: f.54.1.1 PDB: 2q6h_A* 2q72_A* 2qb4_A* 2qei_A* 3f3a_A* 3f3c_A* 3f3d_A* 3f3e_A* 3f48_A* 3f4i_A* 3f4j_A* 3usg_A* 3usi_A 3usj_A 3usk_A 3usl_A* 3usm_A* 3uso_A 3usp_A* 3qs5_A* ... Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
d2a65a1 509 Na(+):neurotransmitter symporter homologue LeuT {A 96.74
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]} Back     information, alignment and structure
class: Membrane and cell surface proteins and peptides
fold: SNF-like
superfamily: SNF-like
family: SNF-like
domain: Na(+):neurotransmitter symporter homologue LeuT
species: Aquifex aeolicus [TaxId: 63363]

Probab=96.74  E-value=0.21  Score=45.78  Aligned_cols=102  Identities=15%  Similarity=0.106  Sum_probs=58.4

Q ss_pred             CCHHHHHHHHHHHHHhHh-hhHHHHHHHhhcHH-HHHHHHHHHHHHHHHHH----HHHHhhhhCCCCCChHHHHHHhcCc
Q 017309           46 CSFTQTIFNGINVMAGVG-LLSTPYTVKEAGWA-SLVVLLLFAVVCCYTAS----LMRYCFESKEGITTYPDIGEAAFGK  119 (373)
Q Consensus        46 ~s~~~~~~~l~~~~iG~G-il~lP~~~~~~G~~-g~i~~~~~~~~~~~~~~----~l~~~~~~~~~~~~y~~l~~~~~G~  119 (373)
                      .|..+-++..++..+|.| +.-.||-..+.|.. .++..+++.++.-.-..    .+.+.. +......+..+.....+.
T Consensus         5 ~s~~~fila~~g~avGlGNiWrFPyl~~~nGGgaFlipY~~~l~l~gvPll~lE~~lGq~~-~~g~i~~~~~i~~~~~~~   83 (509)
T d2a65a1           5 ATRLGLILAMAGNAVGLGNFLRFPVQAAENGGGAFMIPYIIAFLLVGIPLMWIEWAMGRYG-GAQGHGTTPAIFYLLWRN   83 (509)
T ss_dssp             SCHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHHHHHHHHHHHHHTHHHHHHHHHHHHHHH-HTTTCCSHHHHHHHHSCS
T ss_pred             CChHHHHHHHHHHHhcccHHHhhhHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHcCCC-CCCcccHHHHHHHHhccC
Confidence            455888999999999998 45699988666543 44444444333333333    333332 356667888887777654


Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHhhhhh
Q 017309          120 YGRLLISVLLYTELYSYCVEFIILEGDNL  148 (373)
Q Consensus       120 ~~~~~~~i~~~~~~~g~~~~y~i~~~~~l  148 (373)
                      +....+.....+..+..++.|.++.+-.+
T Consensus        84 ~~~~giG~~~~~~~~~i~~yy~vi~~w~l  112 (509)
T d2a65a1          84 RFAKILGVFGLWIPLVVAIYYVYIESWTL  112 (509)
T ss_dssp             HHHHHHHTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cchhHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            33233333333444444455555544433