Citrus Sinensis ID: 017328

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAVV
cEEEcccHHHHHHHHccccEEEEccccccccccEEccccccccccccccHHHHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccccccccccccccccEEccccHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccEEEEEEccEEccccccccHHHHHcccccccccccHHHHHHHHHHcccEEEEEEcccccccccccccccHHHHHHHHHHHHHHcccccccccccccccHHHHHHHHHHcccccccccccEEEccccccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccc
cccEcccHHHHHHHHHcHHHEEEcccccEEEEEEcHHHcccccEccEcHHHHHHHHHHHHHHHcHHHHcHHEccEEEcccHHHEcccccccccccccccccccccccccHHHHHHHHHHHHHHcccccccccccccccccccHHHccccccccHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccEEEEEcccccccccccccHHHHHHccccEccEcccHHHHHHHHHcccEEEEccccccHHHccHHHcccHHHHHHHHHHHHHHcccEEEEEcccccccHHHHHHHHHHHcccccccccEEEEEEccHHHcccccHHHHHHHHHHHHcccccccccHHcccccccEEEEEcccccccccEEEcc
mysiplppwvleeisknpdlvytdksgrrnpeyislgcdtipllrgrtpiqvYSDYMRSFRDRFRDYLGDVVQEIQvglgpcgelrypaypesngtwkfpgigefqcYDKYMRASLKASaeassnedwgrsgphdsgqynqfpedtgffrrdgtwnseyGRFFMEWYSGKLIQHGDRILAAAKEIFQgtgsklsgkvagihwhyrsrshaaeltagyyntrycdgyIPIARMLAKHGailnftcmemrdreqpgnancspegLVQQVKMATRTAGVELagenalerydaDAYAQVLATSnldagnglGAFTYLRMHKKLFESDNWRNLVEFVQRMssegrrprlpewdstgsdlyvgfvkgkngkktkeaavv
mysiplppwvleeisknpdlvytdksgrrnpeyislgcdtipllrgrtpiQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRmssegrrprlpewdstgsdlyvgfvkgkngkktkeaavv
MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAVV
*******PWVLEEISKNPDLVYTDK**RRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRA******************************DTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCME*******************QVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQ*******************DLYVGFV**************
MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQP***NCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSE*****************************KEAAV*
MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASL*****************HDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKN**********
MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKE****
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MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAVV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query373 2.2.26 [Sep-21-2011]
O23553548 Beta-amylase 3, chloropla yes no 0.994 0.677 0.743 1e-173
Q9LIR6575 Beta-amylase 1, chloropla no no 0.903 0.586 0.621 1e-128
O22585496 Beta-amylase OS=Medicago N/A no 0.919 0.691 0.491 2e-96
P25853498 Beta-amylase 5 OS=Arabido no no 0.898 0.672 0.491 3e-96
P10538496 Beta-amylase OS=Glycine m no no 0.898 0.675 0.494 5e-96
P10537499 Beta-amylase OS=Ipomoea b N/A no 0.890 0.665 0.497 4e-94
O64407496 Beta-amylase OS=Vigna ung N/A no 0.898 0.675 0.482 8e-93
P16098535 Beta-amylase OS=Hordeum v N/A no 0.914 0.637 0.508 1e-92
P55005488 Beta-amylase OS=Zea mays N/A no 0.895 0.684 0.498 2e-92
P82993535 Beta-amylase OS=Hordeum v N/A no 0.914 0.637 0.502 3e-92
>sp|O23553|BAM3_ARATH Beta-amylase 3, chloroplastic OS=Arabidopsis thaliana GN=BAM3 PE=1 SV=3 Back     alignment and function desciption
 Score =  608 bits (1567), Expect = e-173,   Method: Compositional matrix adjust.
 Identities = 276/371 (74%), Positives = 324/371 (87%)

Query: 3   SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
           SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCD++P+LRGRTPIQVYSD+MRSFR+
Sbjct: 178 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDSVPVLRGRTPIQVYSDFMRSFRE 237

Query: 63  RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 122
           RF  Y+G V+ EIQVG+GPCGELRYP+YPESNGTW+FPGIGEFQCYDKYM++SL+A AE+
Sbjct: 238 RFEGYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKSSLQAYAES 297

Query: 123 SSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA 182
               +WG SGPHD+G+Y   PEDT FFRRDGTWNSEYG+FFMEWYSGKL++HGD++L++A
Sbjct: 298 IGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFMEWYSGKLLEHGDQLLSSA 357

Query: 183 KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF 242
           K IFQG+G+KLSGKVAGIHWHY +RSHAAELTAGYYNTR  DGY+PIA+M  KHG +LNF
Sbjct: 358 KGIFQGSGAKLSGKVAGIHWHYNTRSHAAELTAGYYNTRNHDGYLPIAKMFNKHGVVLNF 417

Query: 243 TCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLD 302
           TCMEM+D EQP +ANCSPEGLV+QV+ ATR AG ELAGENALERYD+ A+ QV+AT+  D
Sbjct: 418 TCMEMKDGEQPEHANCSPEGLVKQVQNATRQAGTELAGENALERYDSSAFGQVVATNRSD 477

Query: 303 AGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGK 362
           +GNGL AFTYLRM+K+LFE  NW+ LVEFV+ M   G   RL + D+TGSDLYVGFVKGK
Sbjct: 478 SGNGLTAFTYLRMNKRLFEGQNWQQLVEFVKNMKEGGHGRRLSKEDTTGSDLYVGFVKGK 537

Query: 363 NGKKTKEAAVV 373
             +  +EAA+V
Sbjct: 538 IAENVEEAALV 548
Beta-amylase activity. No alpha-amylase activity. Involved in cold resistance. Mediates the accumulation of maltose upon freezing stress, thus contributing to the protection of the photosynthetic electron transport chain. Plays a role in the circadian-regulated starch degradation and maltose metabolism in chloroplasts, especially at night. More active on phosphorylated glucan. Interacts directly with starch or other alpha-1,4-glucan.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 2
>sp|Q9LIR6|BAM1_ARATH Beta-amylase 1, chloroplastic OS=Arabidopsis thaliana GN=BAM1 PE=1 SV=1 Back     alignment and function description
>sp|O22585|AMYB_MEDSA Beta-amylase OS=Medicago sativa GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P25853|BAM5_ARATH Beta-amylase 5 OS=Arabidopsis thaliana GN=BAM5 PE=2 SV=1 Back     alignment and function description
>sp|P10538|AMYB_SOYBN Beta-amylase OS=Glycine max GN=BMY1 PE=1 SV=3 Back     alignment and function description
>sp|P10537|AMYB_IPOBA Beta-amylase OS=Ipomoea batatas GN=BMY1 PE=1 SV=4 Back     alignment and function description
>sp|O64407|AMYB_VIGUN Beta-amylase OS=Vigna unguiculata GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P16098|AMYB_HORVU Beta-amylase OS=Hordeum vulgare GN=BMY1 PE=1 SV=1 Back     alignment and function description
>sp|P55005|AMYB_MAIZE Beta-amylase OS=Zea mays GN=BMY1 PE=2 SV=1 Back     alignment and function description
>sp|P82993|AMYB_HORVS Beta-amylase OS=Hordeum vulgare subsp. spontaneum GN=BMY1 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
401021345 551 beta-amylase [Citrus limon] 0.994 0.673 0.967 0.0
402171760 551 beta-amylase 1 [Citrus trifoliata] 0.994 0.673 0.975 0.0
402171774373 beta-amylase 8 [Citrus trifoliata] 1.0 1.0 0.978 0.0
224138788 547 predicted protein [Populus trichocarpa] 0.994 0.678 0.795 0.0
255552940 547 Beta-amylase, putative [Ricinus communis 0.994 0.678 0.789 0.0
225427366 543 PREDICTED: beta-amylase 3, chloroplastic 0.991 0.681 0.795 1e-179
356511157 547 PREDICTED: beta-amylase 3, chloroplastic 0.994 0.678 0.781 1e-179
147767384 543 hypothetical protein VITISV_032500 [Viti 0.991 0.681 0.790 1e-178
351726184 540 beta-amylase [Glycine max] gi|59668408|e 0.994 0.687 0.773 1e-178
224126411 548 predicted protein [Populus trichocarpa] 0.994 0.677 0.773 1e-177
>gi|401021345|gb|AFP89361.1| beta-amylase [Citrus limon] Back     alignment and taxonomy information
 Score =  760 bits (1963), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 359/371 (96%), Positives = 366/371 (98%)

Query: 3   SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
           +IPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD
Sbjct: 181 TIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 240

Query: 63  RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 122
           RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA
Sbjct: 241 RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 300

Query: 123 SSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA 182
           S NEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA
Sbjct: 301 SGNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA 360

Query: 183 KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF 242
           KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHG ILNF
Sbjct: 361 KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGVILNF 420

Query: 243 TCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLD 302
           TCMEMRDREQPGNANCSPEGLV+QVKMATRTAGVELAGENALERYDADAYAQVLAT NLD
Sbjct: 421 TCMEMRDREQPGNANCSPEGLVRQVKMATRTAGVELAGENALERYDADAYAQVLATCNLD 480

Query: 303 AGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGK 362
           AGNGL AFTYLRM+KKL+ES+NWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFV+GK
Sbjct: 481 AGNGLSAFTYLRMNKKLYESENWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVEGK 540

Query: 363 NGKKTKEAAVV 373
           NGKK KEAA+V
Sbjct: 541 NGKKNKEAALV 551

Source: Citrus limon

Species: Citrus limon

Genus: Citrus

Family: Rutaceae

Order: Sapindales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|402171760|gb|AFQ33613.1| beta-amylase 1 [Citrus trifoliata] Back     alignment and taxonomy information
>gi|402171774|gb|AFQ33620.1| beta-amylase 8 [Citrus trifoliata] Back     alignment and taxonomy information
>gi|224138788|ref|XP_002326690.1| predicted protein [Populus trichocarpa] gi|222834012|gb|EEE72489.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255552940|ref|XP_002517513.1| Beta-amylase, putative [Ricinus communis] gi|223543524|gb|EEF45055.1| Beta-amylase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225427366|ref|XP_002282871.1| PREDICTED: beta-amylase 3, chloroplastic-like isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
>gi|356511157|ref|XP_003524296.1| PREDICTED: beta-amylase 3, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|147767384|emb|CAN62440.1| hypothetical protein VITISV_032500 [Vitis vinifera] Back     alignment and taxonomy information
>gi|351726184|ref|NP_001236350.1| beta-amylase [Glycine max] gi|59668408|emb|CAI39244.1| beta-amylase [Glycine max] Back     alignment and taxonomy information
>gi|224126411|ref|XP_002329547.1| predicted protein [Populus trichocarpa] gi|118487474|gb|ABK95564.1| unknown [Populus trichocarpa] gi|222870256|gb|EEF07387.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
TAIR|locus:2130504548 CT-BMY "chloroplast beta-amyla 0.994 0.677 0.743 3.2e-159
TAIR|locus:2076086575 BAM1 "beta-amylase 1" [Arabido 0.903 0.586 0.624 3.7e-119
TAIR|locus:2129810498 BAM5 "beta-amylase 5" [Arabido 0.892 0.668 0.494 1.1e-89
TAIR|locus:2127033542 BAM2 "beta-amylase 2" [Arabido 0.887 0.610 0.505 2.6e-86
TAIR|locus:2062535577 BAM6 "beta-amylase 6" [Arabido 0.914 0.590 0.470 4.3e-86
TAIR|locus:2162152531 BAM4 "beta-amylase 4" [Arabido 0.898 0.630 0.461 2.7e-84
TAIR|locus:2050720691 BAM7 "beta-amylase 7" [Arabido 0.887 0.479 0.447 7.5e-73
TAIR|locus:2158455689 BMY2 "beta-amylase 2" [Arabido 0.890 0.481 0.399 1.1e-62
TAIR|locus:2180029536 BMY3 "beta-amylase 3" [Arabido 0.873 0.608 0.379 6.2e-62
TAIR|locus:2130504 CT-BMY "chloroplast beta-amylase" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1551 (551.0 bits), Expect = 3.2e-159, P = 3.2e-159
 Identities = 276/371 (74%), Positives = 324/371 (87%)

Query:     3 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
             SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCD++P+LRGRTPIQVYSD+MRSFR+
Sbjct:   178 SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDSVPVLRGRTPIQVYSDFMRSFRE 237

Query:    63 RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 122
             RF  Y+G V+ EIQVG+GPCGELRYP+YPESNGTW+FPGIGEFQCYDKYM++SL+A AE+
Sbjct:   238 RFEGYIGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMKSSLQAYAES 297

Query:   123 SSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA 182
                 +WG SGPHD+G+Y   PEDT FFRRDGTWNSEYG+FFMEWYSGKL++HGD++L++A
Sbjct:   298 IGKTNWGTSGPHDAGEYKNLPEDTEFFRRDGTWNSEYGKFFMEWYSGKLLEHGDQLLSSA 357

Query:   183 KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF 242
             K IFQG+G+KLSGKVAGIHWHY +RSHAAELTAGYYNTR  DGY+PIA+M  KHG +LNF
Sbjct:   358 KGIFQGSGAKLSGKVAGIHWHYNTRSHAAELTAGYYNTRNHDGYLPIAKMFNKHGVVLNF 417

Query:   243 TCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLD 302
             TCMEM+D EQP +ANCSPEGLV+QV+ ATR AG ELAGENALERYD+ A+ QV+AT+  D
Sbjct:   418 TCMEMKDGEQPEHANCSPEGLVKQVQNATRQAGTELAGENALERYDSSAFGQVVATNRSD 477

Query:   303 AGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGK 362
             +GNGL AFTYLRM+K+LFE  NW+ LVEFV+ M   G   RL + D+TGSDLYVGFVKGK
Sbjct:   478 SGNGLTAFTYLRMNKRLFEGQNWQQLVEFVKNMKEGGHGRRLSKEDTTGSDLYVGFVKGK 537

Query:   363 NGKKTKEAAVV 373
               +  +EAA+V
Sbjct:   538 IAENVEEAALV 548
GO:0000272 "polysaccharide catabolic process" evidence=IEA
GO:0003824 "catalytic activity" evidence=IEA
GO:0005975 "carbohydrate metabolic process" evidence=IEA
GO:0009507 "chloroplast" evidence=ISM
GO:0016161 "beta-amylase activity" evidence=IEA;ISS;IDA
GO:0043169 "cation binding" evidence=IEA
GO:0005983 "starch catabolic process" evidence=IMP;TAS
GO:0009570 "chloroplast stroma" evidence=IDA
GO:0009409 "response to cold" evidence=IEP
GO:0000024 "maltose biosynthetic process" evidence=IMP
TAIR|locus:2076086 BAM1 "beta-amylase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2129810 BAM5 "beta-amylase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2127033 BAM2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2062535 BAM6 "beta-amylase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162152 BAM4 "beta-amylase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2050720 BAM7 "beta-amylase 7" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158455 BMY2 "beta-amylase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2180029 BMY3 "beta-amylase 3" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O23553BAM3_ARATH3, ., 2, ., 1, ., 20.74390.99460.6770yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer3.2.10.963
3rd Layer3.2.1.20.946

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
PLN02803548 PLN02803, PLN02803, beta-amylase 0.0
PLN00197573 PLN00197, PLN00197, beta-amylase; Provisional 1e-180
PLN02801517 PLN02801, PLN02801, beta-amylase 1e-145
pfam01373399 pfam01373, Glyco_hydro_14, Glycosyl hydrolase fami 1e-119
PLN02161531 PLN02161, PLN02161, beta-amylase 1e-117
PLN02905702 PLN02905, PLN02905, beta-amylase 1e-110
PLN02705681 PLN02705, PLN02705, beta-amylase 2e-86
>gnl|CDD|178400 PLN02803, PLN02803, beta-amylase Back     alignment and domain information 
 Score =  749 bits (1936), Expect = 0.0
 Identities = 299/371 (80%), Positives = 340/371 (91%)

Query: 3   SIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRD 62
           SIPLPPWVLEE+SKNPDLVYTD+SGRRNPEYISLGCD++P+LRGRTPIQVYSDYMRSFR+
Sbjct: 178 SIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRE 237

Query: 63  RFRDYLGDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEA 122
           RF+DYLG V+ EIQVG+GPCGELRYP+YPESNGTW+FPGIGEFQCYDKYMRASL+ASAEA
Sbjct: 238 RFKDYLGGVIAEIQVGMGPCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEA 297

Query: 123 SSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILAAA 182
              +DWGR GPHD+G+Y QFPE+TGFFRRDGTWN+EYG+FF+EWYSGKL++HGDRILAAA
Sbjct: 298 IGKKDWGRGGPHDAGEYKQFPEETGFFRRDGTWNTEYGQFFLEWYSGKLLEHGDRILAAA 357

Query: 183 KEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAILNF 242
           + IFQGTG+KLSGKVAGIHWHYR+RSHAAELTAGYYNTR  DGY+PIARM +KHG +LNF
Sbjct: 358 EGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVLNF 417

Query: 243 TCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLD 302
           TCMEMRD EQP +ANCSPEGLV+QVKMATRTAG ELAGENALERYD+ A+AQV+ATS  D
Sbjct: 418 TCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSD 477

Query: 303 AGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGK 362
           +GNGL AFTYLRM+K+LFE DNWR LVEFV+ MS  GR  RLPE D+ GSDLYVGF+K K
Sbjct: 478 SGNGLTAFTYLRMNKRLFEGDNWRQLVEFVKNMSEGGRNRRLPECDTEGSDLYVGFIKDK 537

Query: 363 NGKKTKEAAVV 373
           + +KT EAA+V
Sbjct: 538 DAEKTTEAALV 548

Length = 548
>gnl|CDD|215099 PLN00197, PLN00197, beta-amylase; Provisional Back     alignment and domain information
>gnl|CDD|215431 PLN02801, PLN02801, beta-amylase Back     alignment and domain information
>gnl|CDD|216462 pfam01373, Glyco_hydro_14, Glycosyl hydrolase family 14 Back     alignment and domain information
>gnl|CDD|177820 PLN02161, PLN02161, beta-amylase Back     alignment and domain information
>gnl|CDD|178493 PLN02905, PLN02905, beta-amylase Back     alignment and domain information
>gnl|CDD|178307 PLN02705, PLN02705, beta-amylase Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 373
PLN02803548 beta-amylase 100.0
PLN00197573 beta-amylase; Provisional 100.0
PLN02161531 beta-amylase 100.0
PLN02801517 beta-amylase 100.0
PLN02905702 beta-amylase 100.0
PLN02705681 beta-amylase 100.0
PF01373402 Glyco_hydro_14: Glycosyl hydrolase family 14; Inte 100.0
PF02449374 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR0 95.17
>PLN02803 beta-amylase Back     alignment and domain information 
Probab=100.00  E-value=9.5e-163  Score=1236.35  Aligned_cols=373  Identities=80%  Similarity=1.394  Sum_probs=365.8

Q ss_pred             CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcCceeEEEeccc
Q 017328            1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGDVVQEIQVGLG   80 (373)
Q Consensus         1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~~I~eI~VGlG   80 (373)
                      +|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++||+||+||||
T Consensus       176 ~~~IpLP~WV~e~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTplq~Y~Dfm~SFr~~F~~~l~~~I~eI~VGlG  255 (548)
T PLN02803        176 SCSIPLPPWVLEEMSKNPDLVYTDRSGRRNPEYISLGCDSLPVLRGRTPIQVYSDYMRSFRERFKDYLGGVIAEIQVGMG  255 (548)
T ss_pred             cccccCCHHHHHhhhcCCCceEecCCCCcccceeccccccchhccCCCHHHHHHHHHHHHHHHHHHHhcCceEEEEeccc
Confidence            59999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCccccccc
Q 017328           81 PCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYG  160 (373)
Q Consensus        81 P~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~YG  160 (373)
                      |||||||||||+++|+|+||||||||||||||+++||++|+++|||+||++||||||+||+.|++|+||+++|+|+|+||
T Consensus       256 P~GELRYPSYp~~~g~w~fPGiGEFQCYDky~l~~L~~aA~~~G~p~WG~~gP~dAg~Yn~~P~~t~FF~~~G~~~S~YG  335 (548)
T PLN02803        256 PCGELRYPSYPESNGTWRFPGIGEFQCYDKYMRASLEASAEAIGKKDWGRGGPHDAGEYKQFPEETGFFRRDGTWNTEYG  335 (548)
T ss_pred             cCccccCCCCcCcCCCccCCCccceeeccHHHHHHHHHHHHHhCCHhhccCCCCCcCcCCCCCCCCCCCCCCCCccchhh
Confidence            99999999999999899999999999999999999999999999999999999999999999999999999899999999


Q ss_pred             hhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcEE
Q 017328          161 RFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAIL  240 (373)
Q Consensus       161 ~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~l  240 (373)
                      ||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+||++|||||+|+|
T Consensus       336 ~FFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rdGY~~Ia~mf~rh~~~l  415 (548)
T PLN02803        336 QFFLEWYSGKLLEHGDRILAAAEGIFQGTGAKLSGKVAGIHWHYRTRSHAAELTAGYYNTRNHDGYLPIARMFSKHGVVL  415 (548)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHhhCCCCceEEEEeceeeeecCCCCchhhhccccccCCCcccHHHHHHHHHHcCCeE
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCCCCccceeeccCCcccC
Q 017328          241 NFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAGNGLGAFTYLRMHKKLF  320 (373)
Q Consensus       241 ~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~~~~~~FTylRm~~~lf  320 (373)
                      +||||||+|.+||++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++++...++.+||||||++.||
T Consensus       416 ~FTClEM~D~eqp~~~~s~Pe~Lv~Qv~~aa~~~Gv~~aGENAL~~~d~~~~~qi~~~~~~~~~~~~~~FTyLRm~~~lf  495 (548)
T PLN02803        416 NFTCMEMRDGEQPEHANCSPEGLVRQVKMATRTAGTELAGENALERYDSAAFAQVVATSRSDSGNGLTAFTYLRMNKRLF  495 (548)
T ss_pred             EEEecCcccCCCCccccCCHHHHHHHHHHHHHHcCCceeeeccccccCHHHHHHHHHhhcccccCceeeeEEecCChHHc
Confidence            99999999999999999999999999999999999999999999999999999999999875445699999999999999


Q ss_pred             CccChHHHHHHHHHhcCCCCCCCCCCCccCCCcceeccccccccccccccccC
Q 017328          321 ESDNWRNLVEFVQRMSSEGRRPRLPEWDSTGSDLYVGFVKGKNGKKTKEAAVV  373 (373)
Q Consensus       321 ~~~n~~~F~~FV~~m~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  373 (373)
                      +++||++|++|||+|+++...+++++++.++.+++|++|+...+...+|+|+|
T Consensus       496 ~~~n~~~F~~FVr~M~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~  548 (548)
T PLN02803        496 EGDNWRQLVEFVKNMSEGGRNRRLPECDTEGSDLYVGFIKDKDAEKTTEAALV  548 (548)
T ss_pred             ChhhHHHHHHHHHHhcCccccCccchhhccCccchhhhhcccchhhhhhhhcC
Confidence            99999999999999999888899999999999999999999999999999987

>PLN00197 beta-amylase; Provisional Back     alignment and domain information
>PLN02161 beta-amylase Back     alignment and domain information
>PLN02801 beta-amylase Back     alignment and domain information
>PLN02905 beta-amylase Back     alignment and domain information
>PLN02705 beta-amylase Back     alignment and domain information
>PF01373 Glyco_hydro_14: Glycosyl hydrolase family 14; InterPro: IPR001554 O-Glycosyl hydrolases 3 Back     alignment and domain information
>PF02449 Glyco_hydro_42: Beta-galactosidase; InterPro: IPR013529 O-Glycosyl hydrolases 3 Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
1q6d_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (M 4e-98
2dqx_A495 Mutant Beta-Amylase (W55r) From Soy Bean Length = 4 4e-98
1q6c_A495 Crystal Structure Of Soybean Beta-Amylase Complexed 4e-98
1uko_A495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 7e-98
1ukp_A495 Crystal Structure Of Soybean Beta-Amylase Mutant Su 8e-98
1wdr_A495 The Role Of An Inner Loop In The Catalytic Mechanis 1e-97
1v3h_A495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 1e-97
1v3i_A495 The Roles Of Glu186 And Glu380 In The Catalytic Rea 1e-97
1q6e_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (E 1e-97
1wdq_A495 The Role Of An Inner Loop In The Catalytic Mechanis 1e-97
1wds_A495 The Role Of An Inner Loop In The Catalytic Mechanis 2e-97
1q6g_A495 Crystal Structure Of Soybean Beta-Amylase Mutant (N 2e-97
1bya_A495 Crystal Structures Of Soybean Beta-Amylase Reacted 3e-97
1btc_A491 Three-Dimensional Structure Of Soybean Beta-Amylase 5e-97
1fa2_A498 Crystal Structure Of Beta-Amylase From Sweet Potato 4e-95
1b1y_A500 Sevenfold Mutant Of Barley Beta-Amylase Length = 50 6e-95
2xff_A535 Crystal Structure Of Barley Beta-Amylase Complexed 2e-93
3voc_A419 Crystal Structure Of The Catalytic Domain Of Beta-a 2e-27
1vep_A516 Crystal Structure Analysis Of Triple (T47mY164ET328 2e-25
1ven_A516 Crystal Structure Analysis Of Y164eMALTOSE OF BACIL 9e-25
1b90_A516 Bacillus Cereus Beta-Amylase Apo Form Length = 516 2e-24
1veo_A516 Crystal Structure Analysis Of Y164fMALTOSE OF BACIL 3e-24
1itc_A516 Beta-amylase From Bacillus Cereus Var. Mycoides Com 1e-23
>pdb|1Q6D|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (M51t) With Increased Ph Optimum Length = 495 Back     alignment and structure 
Iteration: 1

 Score =  354 bits (909), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 172/346 (49%), Positives = 233/346 (67%), Gaps = 11/346 (3%)
Query: 1   MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSF 60
           + +IP+P WVL+    N D+ YT++SG RN EY+++G D  P+  GRT I++YSDYM+SF
Sbjct: 102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSF 161
Query: 61  RDRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKAS 119
           R+   D+L   ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A  KA+
Sbjct: 162 RENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAA 220
Query: 120 AEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRIL 179
              + + +W    P D+G+YN  PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL
Sbjct: 221 VARAGHPEW--ELPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQIL 278
Query: 180 AAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI 239
             A + F G   KL+ KV+GIHW Y+  +HAAELTAGYYN    DGY PIARML++H AI
Sbjct: 279 DEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI 338
Query: 240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS 299
           LNFTC+EMRD EQP +A   P+ LVQQV        + +AGENAL RYDA AY Q++  +
Sbjct: 339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNA 398
Query: 300 NLDAGNGLG-------AFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
                N  G         TYLR+   L +  N+    +FV +M ++
Sbjct: 399 RPQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHAD 444
>pdb|2DQX|A Chain A, Mutant Beta-Amylase (W55r) From Soy Bean Length = 495 Back     alignment and structure
>pdb|1Q6C|A Chain A, Crystal Structure Of Soybean Beta-Amylase Complexed With Maltose Length = 495 Back     alignment and structure
>pdb|1UKO|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1UKP|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant Substituted At Surface Region Length = 495 Back     alignment and structure
>pdb|1WDR|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1V3H|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1V3I|A Chain A, The Roles Of Glu186 And Glu380 In The Catalytic Reaction Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1Q6E|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (E178y) With Increased Ph Optimum At Ph 5.4 Length = 495 Back     alignment and structure
>pdb|1WDQ|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta-Amylase Length = 495 Back     alignment and structure
>pdb|1WDS|A Chain A, The Role Of An Inner Loop In The Catalytic Mechanism Of Soybean Beta- Amylase Length = 495 Back     alignment and structure
>pdb|1Q6G|A Chain A, Crystal Structure Of Soybean Beta-Amylase Mutant (N340t) With Increased Ph Optimum Length = 495 Back     alignment and structure
>pdb|1BYA|A Chain A, Crystal Structures Of Soybean Beta-Amylase Reacted With Beta-Maltose And Maltal: Active Site Components And Their Apparent Role In Catalysis Length = 495 Back     alignment and structure
>pdb|1BTC|A Chain A, Three-Dimensional Structure Of Soybean Beta-Amylase Determined At 3.0 Angstroms Resolution: Preliminary Chain Tracing Of The Complex With Alpha-Cyclodextrin Length = 491 Back     alignment and structure
>pdb|1FA2|A Chain A, Crystal Structure Of Beta-Amylase From Sweet Potato Length = 498 Back     alignment and structure
>pdb|1B1Y|A Chain A, Sevenfold Mutant Of Barley Beta-Amylase Length = 500 Back     alignment and structure
>pdb|2XFF|A Chain A, Crystal Structure Of Barley Beta-Amylase Complexed With Acarbose Length = 535 Back     alignment and structure
>pdb|3VOC|A Chain A, Crystal Structure Of The Catalytic Domain Of Beta-amylase From Paenibacillus Polymyxa Length = 419 Back     alignment and structure
>pdb|1VEP|A Chain A, Crystal Structure Analysis Of Triple (T47mY164ET328N) MALTOSE OF BACILLUS CEREUS BETA-Amylase At Ph 6.5 Length = 516 Back     alignment and structure
>pdb|1VEN|A Chain A, Crystal Structure Analysis Of Y164eMALTOSE OF BACILUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1B90|A Chain A, Bacillus Cereus Beta-Amylase Apo Form Length = 516 Back     alignment and structure
>pdb|1VEO|A Chain A, Crystal Structure Analysis Of Y164fMALTOSE OF BACILLUS Cereus Beta-Amylase At Ph 4.6 Length = 516 Back     alignment and structure
>pdb|1ITC|A Chain A, Beta-amylase From Bacillus Cereus Var. Mycoides Complexed With Maltopentaose Length = 516 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
1wdp_A495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 1e-180
2xfr_A535 Beta-amylase; hydrolase, carbohydrate metabolism, 1e-179
1fa2_A498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 1e-178
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 1e-135
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Length = 495 Back     alignment and structure
 Score =  508 bits (1309), Expect = e-180
 Identities = 172/353 (48%), Positives = 234/353 (66%), Gaps = 11/353 (3%)

Query: 2   YSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFR 61
            +IP+P WVL+    N D+ YT++SG RN EY+++G D  P+  GRT I++YSDYM+SFR
Sbjct: 103 VNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFR 162

Query: 62  DRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASA 120
           +   D+L   ++ +I+VGLGP GELRYP+YP+S G W+FPGIGEFQCYDKY++A  KA+ 
Sbjct: 163 ENMSDFLESGLIIDIEVGLGPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAV 221

Query: 121 EASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILA 180
             + + +W    P D+G+YN  PE TGFF+ +GT+ +E G+FF+ WYS KL+ HGD+IL 
Sbjct: 222 ARAGHPEWE--LPDDAGKYNDVPESTGFFKSNGTYVTEKGKFFLTWYSNKLLNHGDQILD 279

Query: 181 AAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAIL 240
            A + F G   KL+ KV+GIHW Y+  +HAAELTAGYYN    DGY PIARML++H AIL
Sbjct: 280 EANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAIL 339

Query: 241 NFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSN 300
           NFTC+EMRD EQP +A   P+ LVQQV        + +AGENAL RYDA AY Q++  + 
Sbjct: 340 NFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNAR 399

Query: 301 LDAGN-------GLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSEGRRPRLPE 346
               N        +   TYLR+   L +  N+    +FV +M ++      P+
Sbjct: 400 PQGVNNNGPPKLSMFGVTYLRLSDDLLQKSNFNIFKKFVLKMHADQDYCANPQ 452
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Length = 535 Back     alignment and structure
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Length = 498 Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Length = 516 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
1wdp_A495 Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.2 100.0
1fa2_A498 Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.3 100.0
2xfr_A535 Beta-amylase; hydrolase, carbohydrate metabolism, 100.0
1vem_A516 Beta-amylase; beta-alpha-barrels, optimum PH, hydr 100.0
3tty_A 675 Beta-GAL, beta-galactosidase; TIM barrel, glycosid 80.58
>1wdp_A Beta-amylase; (beta/alpha)8 barrel, hydrolase; 1.27A {Glycine max} SCOP: c.1.8.1 PDB: 1bfn_A* 1q6c_A 1wdr_A* 1v3i_A* 1v3h_A* 1q6d_A* 1q6g_A* 1wdq_A* 1wds_A* 1q6e_A* 1q6f_A* 2dqx_A 1byb_A* 1bya_A* 1byc_A* 1byd_A* 1uko_A 1ukp_A 1btc_A* Back     alignment and structure
Probab=100.00  E-value=3e-154  Score=1167.25  Aligned_cols=337  Identities=50%  Similarity=0.973  Sum_probs=328.2

Q ss_pred             CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhh-cCceeEEEecc
Q 017328            1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYL-GDVVQEIQVGL   79 (373)
Q Consensus         1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~-~~~I~eI~VGl   79 (373)
                      +|+||||+||++++++||||+||||+|+||+||||||||++|||+||||||||+|||+|||++|++|| ++||+||+|||
T Consensus       102 ~~~IPLP~WV~~~~~~~pDi~ftDr~G~rn~EyLSlg~D~~pvl~GRTpiq~Y~Dfm~SFr~~F~~~~~~~~I~eI~VGl  181 (495)
T 1wdp_A          102 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL  181 (495)
T ss_dssp             SCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECC
T ss_pred             cccccCCHHHHHhhccCCCcEEECCCCCccccccccccccccccCCCCHHHHHHHHHHHHHHHHHHhccCCeeEEEEeCc
Confidence            48999999999999999999999999999999999999999999999999999999999999999999 88999999999


Q ss_pred             cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328           80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY  159 (373)
Q Consensus        80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y  159 (373)
                      ||||||||||||+++| |+||||||||||||||+++||++|+++|||+||+  |||||+||+.|++|+||+++|+|+|+|
T Consensus       182 GP~GELRYPSYp~~~g-W~fPGiGEFQCYDky~~~~Lk~aA~~~G~~~WG~--P~dag~yn~~P~~t~FF~~~G~w~s~Y  258 (495)
T 1wdp_A          182 GPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEWEL--PDDAGKYNDVPESTGFFKSNGTYVTEK  258 (495)
T ss_dssp             SGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCCS--CSSSCCTTCCGGGSTTTSTTSGGGSHH
T ss_pred             cccccccCCCCccccC-CCCCCcceeeechHHHHHHHHHHHHHhCchhhCC--CCCCCccCCCCCCCCCcCCCCcccchh
Confidence            9999999999999887 9999999999999999999999999999999998  999999999999999999999999999


Q ss_pred             chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328          160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI  239 (373)
Q Consensus       160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~  239 (373)
                      |||||+|||++||+||||||++|+.+|++++|+|++|||||||||+|+|||||||||||||++||||+|||+|||||||+
T Consensus       259 GkFFL~WYs~~Ll~HgdrvL~~A~~~F~~~~v~l~~KV~GIHWwY~t~SHaAELTAGyYNt~~rdGY~~Ia~m~~rh~~~  338 (495)
T 1wdp_A          259 GKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI  338 (495)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCCCTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHTTTCE
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHhccCCCceEEEEeceeeeccCCCCChHHhhcccccCCCCCchHHHHHHHHHcCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCC-------CCCccceee
Q 017328          240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDA-------GNGLGAFTY  312 (373)
Q Consensus       240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~-------~~~~~~FTy  312 (373)
                      |+||||||+|.|||+++.|+||+||+||+++|+++||+|+|||||+|||..+|+||+++++...       ..++++|||
T Consensus       339 l~fTC~EM~d~eq~~~~~s~Pe~Lv~QV~~aa~~~Gv~~aGENAL~~~d~~a~~qI~~~~~~~~~~~~~~~~~~~~~FTy  418 (495)
T 1wdp_A          339 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTY  418 (495)
T ss_dssp             EEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEEE
T ss_pred             EEEEecCCCcCCCCcccCCCHHHHHHHHHHHHHHhCCceeccccccccCHHHHHHHHHHhccccccccCCccCceeeEEE
Confidence            9999999999999999999999999999999999999999999999999999999999987531       135899999


Q ss_pred             ccCCcccCCccChHHHHHHHHHhcCCCC
Q 017328          313 LRMHKKLFESDNWRNLVEFVQRMSSEGR  340 (373)
Q Consensus       313 lRm~~~lf~~~n~~~F~~FV~~m~~~~~  340 (373)
                      |||++.||+++||++|++|||+||++..
T Consensus       419 lRm~~~lf~~~n~~~F~~FVr~m~~~~~  446 (495)
T 1wdp_A          419 LRLSDDLLQKSNFNIFKKFVLKMHADQD  446 (495)
T ss_dssp             SCCCHHHHSHHHHHHHHHHHHHHTTTCC
T ss_pred             ecCChhhCCchhHHHHHHHHHHHhcCCC
Confidence            9999999999999999999999999654
>1fa2_A Beta-amylase; TIM barrel, hydrolase; HET: DOM; 2.30A {Ipomoea batatas} SCOP: c.1.8.1 Back     alignment and structure
>2xfr_A Beta-amylase; hydrolase, carbohydrate metabolism, glycosyl hydrolase famil starch degradation, germination; 0.97A {Hordeum vulgare} PDB: 2xff_A 2xfy_A* 2xg9_A* 2xgb_A* 2xgi_A* 1b1y_A* Back     alignment and structure
>1vem_A Beta-amylase; beta-alpha-barrels, optimum PH, hydrolase; HET: GLC; 1.85A {Bacillus cereus} SCOP: b.3.1.1 c.1.8.1 PDB: 1b90_A* 1j0y_A* 1j0z_A* 1j10_A* 1b9z_A* 1j12_A* 1j18_A* 1j11_A* 5bca_A 1veo_A* 1itc_A* 1ven_A* 1vep_A* 1cqy_A Back     alignment and structure
>3tty_A Beta-GAL, beta-galactosidase; TIM barrel, glycoside hydrolase, hydrolase; HET: GLA; 2.25A {Bacillus circulans subsp} PDB: 3tts_A* Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 373
d1b1ya_500 c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare 0.0
d1fa2a_498 c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea b 0.0
d1wdpa1490 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine m 0.0
d1vema2417 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus 1e-142
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Length = 500 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Barley (Hordeum vulgare) [TaxId: 4513]

 Score =  539 bits (1389), Expect = 0.0
 Identities = 176/345 (51%), Positives = 231/345 (66%), Gaps = 11/345 (3%)

Query: 2   YSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFR 61
            +IP+P WV +  +++PD+ YTD  G RN EY++LG D  PL  GR+ +Q+Y+DYM SFR
Sbjct: 97  VNIPIPQWVRDVGTRDPDIFYTDGHGTRNIEYLTLGVDNQPLFHGRSAVQMYADYMTSFR 156

Query: 62  DRFRDYL-GDVVQEIQVGLGPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASA 120
           +  +D+L   V+ +I+VGLGP GELRYP+YP+S+G W FPGIGEF CYDKY++A  KA+A
Sbjct: 157 ENMKDFLDAGVIVDIEVGLGPAGELRYPSYPQSHG-WSFPGIGEFICYDKYLQADFKAAA 215

Query: 121 EASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEYGRFFMEWYSGKLIQHGDRILA 180
            A  + +W    P+D+GQYN  PE T FFR +GT+ SE GRFF+ WYS  LI+HGDRIL 
Sbjct: 216 AAVGHPEWE--FPNDAGQYNDTPERTQFFRDNGTYLSEKGRFFLAWYSNNLIKHGDRILD 273

Query: 181 AAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAIL 240
            A ++F G   +L+ K+AG+HW Y+  SHAAELTAGYYN    DGY  IARML +H A +
Sbjct: 274 EANKVFLGYKVQLAIKIAGVHWWYKVPSHAAELTAGYYNLHDRDGYRTIARMLKRHRASI 333

Query: 241 NFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATS- 299
           NFTC EMRD EQP +A  +PE LVQQV  A    G+ ++ ENAL RYD  AY  +L  + 
Sbjct: 334 NFTCAEMRDSEQPPDAMSAPEELVQQVLSAGWREGLNVSCENALPRYDPTAYNTILRNAR 393

Query: 300 ------NLDAGNGLGAFTYLRMHKKLFESDNWRNLVEFVQRMSSE 338
                 +    + L  FTYLR+  +L E  N+ N   FV RM + 
Sbjct: 394 PHGINQSGPPEHKLFGFTYLRLSNQLVEGQNYVNFKTFVDRMHAN 438
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Length = 498 Back     information, alignment and structure
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Length = 490 Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Length = 417 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
d1wdpa1490 beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} 100.0
d1b1ya_500 beta-Amylase {Barley (Hordeum vulgare) [TaxId: 451 100.0
d1fa2a_498 beta-Amylase {Sweet potato (Ipomoea batatas) [TaxI 100.0
d1vema2417 Bacterial beta-amylase {Bacillus cereus [TaxId: 13 100.0
>d1wdpa1 c.1.8.1 (A:6-495) beta-Amylase {Soybean (Glycine max) [TaxId: 3847]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: TIM beta/alpha-barrel
superfamily: (Trans)glycosidases
family: Amylase, catalytic domain
domain: beta-Amylase
species: Soybean (Glycine max) [TaxId: 3847]

Probab=100.00  E-value=2.4e-156  Score=1176.67  Aligned_cols=337  Identities=50%  Similarity=0.968  Sum_probs=327.5

Q ss_pred             CCccCCChhhHHhhhcCCCeeeecCCCCcCCcceecccCcccccCCCChhHhhHHHHHHHHHHHhhhhcC-ceeEEEecc
Q 017328            1 MYSIPLPPWVLEEISKNPDLVYTDKSGRRNPEYISLGCDTIPLLRGRTPIQVYSDYMRSFRDRFRDYLGD-VVQEIQVGL   79 (373)
Q Consensus         1 ~~~IPLP~WV~~~~~~dpDi~ytDr~G~rn~E~LSl~~D~~pvl~GRTpiq~Y~dfm~SF~~~F~~~~~~-~I~eI~VGl   79 (373)
                      +|+||||+||++++++|||||||||+|+||+||||||||++|||+||||||||+|||+|||++|++||++ ||+||+|||
T Consensus        97 ~~~IPLP~WV~~~g~~~pDi~ftDr~G~rn~E~lSl~~D~~pvl~GRTplq~Y~DFm~SFr~~F~~~~~~g~I~eI~VGl  176 (490)
T d1wdpa1          97 IVNIPIPQWVLDIGESNHDIFYTNRSGTRNKEYLTVGVDNEPIFHGRTAIEIYSDYMKSFRENMSDFLESGLIIDIEVGL  176 (490)
T ss_dssp             SCCBCSCHHHHHHHHHCGGGEEECTTCCEEEEEECGGGTTCCCBTTBCHHHHHHHHHHHHHHHTHHHHHTTCEEEEEECC
T ss_pred             ccccCCcHHHHhhhccCCCceeecCCCCcccceeeeeeccccccCCCcHHHHHHHHHHHHHHHHHHhccCCeEEEEEecc
Confidence            4899999999999999999999999999999999999999999999999999999999999999999977 999999999


Q ss_pred             cCCccccCCCCCCCCCCCcCCccceehhccHHHHHHHHHHHHhccccccCCCCCCCCCCCCCCCCCCCCcCCCCcccccc
Q 017328           80 GPCGELRYPAYPESNGTWKFPGIGEFQCYDKYMRASLKASAEASSNEDWGRSGPHDSGQYNQFPEDTGFFRRDGTWNSEY  159 (373)
Q Consensus        80 GP~GELRYPSYp~~~g~w~fPGiGEFQCYDk~m~~~L~~~A~~~G~~~WG~~gP~dag~yn~~P~~t~FF~~~g~~~s~Y  159 (373)
                      ||||||||||||+++| |+||||||||||||||+++||++|+++|||+||  +|||||+||+.|++|+||+++|+|+|+|
T Consensus       177 GP~GELRYPSYp~~~G-w~yPGiGEFQCYDky~~~~l~~aA~~~G~~~Wg--~P~dag~yn~~P~~t~FF~~~G~~~s~Y  253 (490)
T d1wdpa1         177 GPAGELRYPSYPQSQG-WEFPGIGEFQCYDKYLKADFKAAVARAGHPEWE--LPDDAGKYNDVPESTGFFKSNGTYVTEK  253 (490)
T ss_dssp             SGGGBSSCCCSCGGGT-CCTTCCCCCCCCSHHHHHHHHHHHHHTTCTTCC--SCSSSCCTTCCGGGSTTTSTTSGGGSHH
T ss_pred             ccCccccCCCCccccC-CcCCCcceeeeCCHHHHHHHHHHHHHhCCcccC--CCCcCccCCCCCCCCCCCCCCCcccccc
Confidence            9999999999999997 999999999999999999999999999999997  6999999999999999999999999999


Q ss_pred             chhhHHhhhhHHHhHHHHHHHHHHHhhcCCCceeeeEecceeeccCCCCChhhhhccccCCCCCCChHHHHHHHHHcCcE
Q 017328          160 GRFFMEWYSGKLIQHGDRILAAAKEIFQGTGSKLSGKVAGIHWHYRSRSHAAELTAGYYNTRYCDGYIPIARMLAKHGAI  239 (373)
Q Consensus       160 G~FFL~WYs~~L~~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwy~t~sHaAElTAGyYNt~~rdGY~~Ia~mf~r~~~~  239 (373)
                      |||||+|||++||+||||||++|+.+|++++|+|+||||||||||+|+|||||||||||||++||||+|||+|||||+|+
T Consensus       254 GkFFL~WYs~~Ll~HgdrvL~~A~~~F~g~~v~l~aKv~GIHWwY~t~SHaAElTAGyYNt~~rDGY~~Ia~m~~rh~~~  333 (490)
T d1wdpa1         254 GKFFLTWYSNKLLNHGDQILDEANKAFLGCKVKLAIKVSGIHWWYKVENHAAELTAGYYNLNDRDGYRPIARMLSRHHAI  333 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTTTSSCEEEEECCCCCTTTTSTTCHHHHHHTCCCBTTBCSSHHHHHHHHTTTCE
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEeeeecccCCCCCChHHHhccccCCCCCccHHHHHHHHHHcCCe
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             EEEeeccccCCCCCCCCCCChHHHHHHHHHHHHHcCCcccccccccccChhHHHHHHHhcCcCCC-------CCccceee
Q 017328          240 LNFTCMEMRDREQPGNANCSPEGLVQQVKMATRTAGVELAGENALERYDADAYAQVLATSNLDAG-------NGLGAFTY  312 (373)
Q Consensus       240 l~fTClEM~d~e~p~~~~s~Pe~Lv~Qv~~aa~~~Gv~~~GENAl~~~d~~~~~qi~~~~~~~~~-------~~~~~FTy  312 (373)
                      |+||||||+|++||++++|+||+||+||+++|+++||+|+|||||+|||.++|+||+++++.+..       ..+.+|||
T Consensus       334 l~FTC~EM~d~eq~~~a~s~PE~Lv~QV~~aa~~~Gv~vaGENAL~~~d~~~~~qI~~~~~~~~~~~~~~~~~~~~~FTy  413 (490)
T d1wdpa1         334 LNFTCLEMRDSEQPSDAKSGPQELVQQVLSGGWREDIRVAGENALPRYDATAYNQIILNARPQGVNNNGPPKLSMFGVTY  413 (490)
T ss_dssp             EEECCTTCCGGGSCGGGCCCHHHHHHHHHHHHHHTTCCEEEECSSCCCSHHHHHHHHHHHSTTCCCTTSSCSSCCSEEEE
T ss_pred             EEEecccccccCCCccccCCHHHHHHHHHHHHHHcCCceeeeccchhcCchHHHHHHHhcccccCcCCCCcccccceeee
Confidence            99999999999999999999999999999999999999999999999999999999999887421       23779999


Q ss_pred             ccCCcccCCccChHHHHHHHHHhcCCCC
Q 017328          313 LRMHKKLFESDNWRNLVEFVQRMSSEGR  340 (373)
Q Consensus       313 lRm~~~lf~~~n~~~F~~FV~~m~~~~~  340 (373)
                      |||++.||+++||++|++|||+||.+..
T Consensus       414 lRm~~~lf~~~n~~~F~~FVr~M~~~~~  441 (490)
T d1wdpa1         414 LRLSDDLLQKSNFNIFKKFVLKMHADQD  441 (490)
T ss_dssp             SCCCHHHHSHHHHHHHHHHHHHHTTTCC
T ss_pred             ecCCHhhcCcchHHHHHHHHHHhccCCC
Confidence            9999999999999999999999998543
>d1b1ya_ c.1.8.1 (A:) beta-Amylase {Barley (Hordeum vulgare) [TaxId: 4513]} Back     information, alignment and structure
>d1fa2a_ c.1.8.1 (A:) beta-Amylase {Sweet potato (Ipomoea batatas) [TaxId: 4120]} Back     information, alignment and structure
>d1vema2 c.1.8.1 (A:1-417) Bacterial beta-amylase {Bacillus cereus [TaxId: 1396]} Back     information, alignment and structure