Citrus Sinensis ID: 017358

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
cEEEEEEEEccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHcccccccHHHHHHcccccccEEEcccccccccHHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccEEEcccEEEccccEEEEEEEccccEEEccccccccccHHHHHHHHHHHHHHHHcccccccccccccEEEEccccccccccccccccccHHHccccccccccEEEccEEEEcccHHHHcccccccccccHHHHHHHHHHHHHccHHHHHccc
ccEEEEEEEEccccHcccHcccccccEcccccEEEEEEcccHHHHHHHHHHccccccEccccEEEEEcccccccccccHHHHHcHcccccccHHHHHHHHHccccHHHcccccccccccHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccEEEEEccccEEEcccccEEEcEEEccEEEccEEccHHHccHHHHHHHHHHHHHHHHcccccHHHHccccEEEEEccccccccccccccccccEEEEEcccEEEEEEccccEEEEEEEEEEEEEEcccccHHHHHHHHHHHHHHHHcHHHHHccc
MIWGIVRRKITSAQVIGqsvskigprchatAQKEAILTCRgfqrvqrssyhilsgnyvcstpRSEVIELIQkgsfigsrsrlfssdsgdlvDAVVpfmgesitdgTLAKFLkqpgdrvemdepiaqietdkvtidvaspqagviqnvpmtRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALqhqpvvnavidgddiiyrdYIDISFAvgtkkglvvpvirnsermnFAEIEKEISTLAKKandgsisidemaggtftisnggvygsllstpiinppqsailgmhsivnrpmvvggnvvprpMMYIALTYDHRLIDGREAVFFLRRIKDIVEDprrllldi
miwgivrrkitsaqvigqsvskigprCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFmgesitdgtLAKFLKQPGDRVEMDEPIAQIEtdkvtidvaspqagviqnvpmtrLRKRVAtrlkdsqntfallttfnevdmtNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISfavgtkkglvvpvirnsermnFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRrikdivedprrllldi
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVidgddiiyrdyidiSFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
*IWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQ**********IAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAK***DGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVED********
*IWGI*********************************************************************************************************************************************************RLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELI****************************************************************************VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MIWGIVRRKITSAQVIGQSVSKIGPRCHATAQKEAILTCRGFQRVQRSSYHILSGNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query373 2.2.26 [Sep-21-2011]
Q8H107464 Dihydrolipoyllysine-resid yes no 0.613 0.493 0.882 1e-120
Q9FLQ4464 Dihydrolipoyllysine-resid no no 0.613 0.493 0.882 1e-119
P11179455 Dihydrolipoyllysine-resid yes no 0.603 0.494 0.678 7e-89
Q9N0F1455 Dihydrolipoyllysine-resid yes no 0.603 0.494 0.674 1e-87
Q9D2G2454 Dihydrolipoyllysine-resid yes no 0.603 0.495 0.674 1e-87
Q01205454 Dihydrolipoyllysine-resid yes no 0.603 0.495 0.674 2e-87
Q90512409 Dihydrolipoyllysine-resid N/A no 0.608 0.555 0.663 4e-87
P36957453 Dihydrolipoyllysine-resid yes no 0.603 0.496 0.665 5e-87
Q4UKI7401 Dihydrolipoyllysine-resid yes no 0.616 0.573 0.613 3e-83
Q1RHI5400 Dihydrolipoyllysine-resid yes no 0.616 0.575 0.613 7e-83
>sp|Q8H107|ODO2B_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial OS=Arabidopsis thaliana GN=At4g26910 PE=1 SV=2 Back     alignment and function desciption
 Score =  433 bits (1113), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 202/229 (88%), Positives = 222/229 (96%)

Query: 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
           + VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS YKDAF EKHGVKLGLMS
Sbjct: 236 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMS 295

Query: 205 GFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE 264
           GF+KAAVSALQHQPVVNAVIDGDDIIYRDY+DIS AVGT KGLVVPVIR +++MNFAEIE
Sbjct: 296 GFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIE 355

Query: 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
           K I++LAKKAN+G+ISIDEMAGG+FT+SNGGVYGSL+STPIINPPQSAILGMHSIV+RPM
Sbjct: 356 KTINSLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVSRPM 415

Query: 325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
           VVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRR+KD+VEDP+RLLLDI
Sbjct: 416 VVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI 464
The 2-oxoglutarate dehydrogenase complex catalyzes the overall conversion of 2-oxoglutarate to succinyl-CoA and CO(2). It contains multiple copies of three enzymatic components: 2-oxoglutarate dehydrogenase (E1), dihydrolipoamide succinyltransferase (E2) and lipoamide dehydrogenase (E3).
Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 3EC: .EC: 1EC: .EC: 6EC: 1
>sp|Q9FLQ4|ODO2A_ARATH Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 1, mitochondrial OS=Arabidopsis thaliana GN=At5g55070 PE=1 SV=1 Back     alignment and function description
>sp|P11179|ODO2_BOVIN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Bos taurus GN=DLST PE=1 SV=2 Back     alignment and function description
>sp|Q9N0F1|ODO2_PIG Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Sus scrofa GN=DLST PE=1 SV=1 Back     alignment and function description
>sp|Q9D2G2|ODO2_MOUSE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Mus musculus GN=Dlst PE=1 SV=1 Back     alignment and function description
>sp|Q01205|ODO2_RAT Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Rattus norvegicus GN=Dlst PE=1 SV=2 Back     alignment and function description
>sp|Q90512|ODO2_TAKRU Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial (Fragment) OS=Takifugu rubripes GN=dlst PE=3 SV=1 Back     alignment and function description
>sp|P36957|ODO2_HUMAN Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial OS=Homo sapiens GN=DLST PE=1 SV=4 Back     alignment and function description
>sp|Q4UKI7|ODO2_RICFE Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia felis (strain ATCC VR-1525 / URRWXCal2) GN=sucB PE=3 SV=1 Back     alignment and function description
>sp|Q1RHI5|ODO2_RICBR Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex OS=Rickettsia bellii (strain RML369-C) GN=sucB PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
224061043434 predicted protein [Populus trichocarpa] 0.997 0.857 0.665 1e-156
302144114 562 unnamed protein product [Vitis vinifera] 0.994 0.660 0.550 1e-124
356501546464 PREDICTED: dihydrolipoyllysine-residue s 0.986 0.793 0.555 1e-123
356552986461 PREDICTED: dihydrolipoyllysine-residue s 0.989 0.800 0.549 1e-122
224116582467 predicted protein [Populus trichocarpa] 0.589 0.471 0.917 1e-122
255578100469 dihydrolipoamide succinyltransferase com 0.554 0.441 0.912 1e-121
4210332462 2-oxoglutarate dehydrogenase E2 subunit 0.809 0.653 0.603 1e-121
449444056469 PREDICTED: dihydrolipoyllysine-residue s 0.592 0.471 0.903 1e-120
359483352473 PREDICTED: dihydrolipoyllysine-residue s 0.587 0.463 0.908 1e-119
18416889464 dihydrolipoyllysine-residue succinyltran 0.613 0.493 0.882 1e-119
>gi|224061043|ref|XP_002300330.1| predicted protein [Populus trichocarpa] gi|222847588|gb|EEE85135.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  555 bits (1431), Expect = e-156,   Method: Compositional matrix adjust.
 Identities = 289/434 (66%), Positives = 332/434 (76%), Gaps = 62/434 (14%)

Query: 2   IWGIVRRKI-------TSAQVIGQSVSKIGPRCHATAQ-KEAILT-CRGFQRVQRSSYHI 52
           ++G++RR++       +S+ ++ QS+  I P   +T++  + ILT  RGF+ V++ S  +
Sbjct: 1   MFGVIRRRVANGGLSSSSSAILRQSLQTIRPAPSSTSRVSDEILTHARGFEHVRKFSCFV 60

Query: 53  LS-GNYVCSTPRSEVIELIQKGSFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFL 111
              G  + S P  EV+  ++  S   + SR FSSD+GDLVDAVVPFMGESITDGTLAKFL
Sbjct: 61  SPRGRAISSRPVREVVSNMELASSKKTWSRPFSSDTGDLVDAVVPFMGESITDGTLAKFL 120

Query: 112 KQPGDRVEMDEPIAQIETDKVTIDVASPQAGVI--------------------------- 144
           K PGD VE+DE IAQIETDKVTIDVASP+AGVI                           
Sbjct: 121 KNPGDSVEVDEAIAQIETDKVTIDVASPEAGVIKEYIAKEGDTVEPGAKIAVISKSGEGV 180

Query: 145 -------------------------QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMT 179
                                    + VPMTRLRKRVATRLKDSQNTFA+LTTFNEVDMT
Sbjct: 181 AHVAPSENISQKAAPKQSASQTKDEEKVPMTRLRKRVATRLKDSQNTFAMLTTFNEVDMT 240

Query: 180 NLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISF 239
           NLMKLRSDYKDAF+EKHGVKLGLMSGF+KAAVS LQ+QP++NAVIDGDDIIYRDY+DIS 
Sbjct: 241 NLMKLRSDYKDAFVEKHGVKLGLMSGFIKAAVSGLQNQPIINAVIDGDDIIYRDYVDISI 300

Query: 240 AVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGS 299
           AVGT KGLVVPVIRN+ +MNFAEIEKEI+TLAKKANDG+ISIDEMAGG+FTISNGGVYGS
Sbjct: 301 AVGTPKGLVVPVIRNAGKMNFAEIEKEINTLAKKANDGTISIDEMAGGSFTISNGGVYGS 360

Query: 300 LLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRI 359
           LLSTPIINPPQSAILGMHSIV+RPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRI
Sbjct: 361 LLSTPIINPPQSAILGMHSIVSRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRI 420

Query: 360 KDIVEDPRRLLLDI 373
           KD+VEDPRRLLLD+
Sbjct: 421 KDVVEDPRRLLLDV 434

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|302144114|emb|CBI23219.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356501546|ref|XP_003519585.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|356552986|ref|XP_003544840.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Glycine max] Back     alignment and taxonomy information
>gi|224116582|ref|XP_002317337.1| predicted protein [Populus trichocarpa] gi|222860402|gb|EEE97949.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|255578100|ref|XP_002529920.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] gi|223530597|gb|EEF32474.1| dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|4210332|emb|CAA11553.1| 2-oxoglutarate dehydrogenase E2 subunit [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|449444056|ref|XP_004139791.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] gi|449517675|ref|XP_004165870.1| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|359483352|ref|XP_002266593.2| PREDICTED: dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial [Vitis vinifera] Back     alignment and taxonomy information
>gi|18416889|ref|NP_567761.1| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2 [Arabidopsis thaliana] gi|308197130|sp|Q8H107.2|ODO2B_ARATH RecName: Full=Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2, mitochondrial; AltName: Full=2-oxoglutarate dehydrogenase complex component E2-2; Short=OGDC-E2-2; AltName: Full=Dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2; AltName: Full=E2K-2; Flags: Precursor gi|332659869|gb|AEE85269.1| dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex 2 [Arabidopsis thaliana] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
TAIR|locus:2161670464 AT5G55070 [Arabidopsis thalian 0.613 0.493 0.825 4e-123
TAIR|locus:2116432464 AT4G26910 [Arabidopsis thalian 0.833 0.670 0.644 2e-97
DICTYBASE|DDB_G0275029439 odhB "dihydrolipoamide S-succi 0.608 0.517 0.599 1.3e-82
UNIPROTKB|P11179455 DLST "Dihydrolipoyllysine-resi 0.603 0.494 0.638 2.2e-82
ZFIN|ZDB-GENE-030326-1458 dlst "dihydrolipoamide S-succi 0.608 0.495 0.628 9.4e-82
MGI|MGI:1926170454 Dlst "dihydrolipoamide S-succi 0.603 0.495 0.634 9.4e-82
UNIPROTKB|E2R0H0455 DLST "Uncharacterized protein" 0.603 0.494 0.638 1.2e-81
UNIPROTKB|Q9N0F1455 DLST "Dihydrolipoyllysine-resi 0.603 0.494 0.634 1.9e-81
UNIPROTKB|P36957453 DLST "Dihydrolipoyllysine-resi 0.672 0.554 0.573 1.9e-81
RGD|1359615454 Dlst "dihydrolipoamide S-succi 0.603 0.495 0.634 3.2e-81
TAIR|locus:2161670 AT5G55070 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 961 (343.3 bits), Expect = 4.0e-123, Sum P(2) = 4.0e-123
 Identities = 189/229 (82%), Positives = 207/229 (90%)

Query:   145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
             + VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS YKDAFLEKHGVKLGLMS
Sbjct:   236 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFLEKHGVKLGLMS 295

Query:   205 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIE 264
             GF+KAAVSALQHQPVVNAV              S AVGT KGLVVPVIR++++MNFA+IE
Sbjct:   296 GFIKAAVSALQHQPVVNAVIDGDDIIYRDYVDISIAVGTSKGLVVPVIRDADKMNFADIE 355

Query:   265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
             K I+ LAKKA +G+ISIDEMAGG+FT+SNGGVYGSL+STPIINPPQSAILGMHSIV RPM
Sbjct:   356 KTINGLAKKATEGTISIDEMAGGSFTVSNGGVYGSLISTPIINPPQSAILGMHSIVQRPM 415

Query:   325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
             VVGG+VVPRPMMY+ALTYDHRLIDGREAV+FLRRIKD+VEDP+RLLLDI
Sbjct:   416 VVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRIKDVVEDPQRLLLDI 464
GO:0004149 "dihydrolipoyllysine-residue succinyltransferase activity" evidence=IEA
GO:0005739 "mitochondrion" evidence=ISM;IDA
GO:0006099 "tricarboxylic acid cycle" evidence=IEA
GO:0008152 "metabolic process" evidence=IEA;ISS
GO:0016746 "transferase activity, transferring acyl groups" evidence=IEA;ISS
GO:0045252 "oxoglutarate dehydrogenase complex" evidence=IEA
GO:0006979 "response to oxidative stress" evidence=IDA
GO:0022626 "cytosolic ribosome" evidence=IDA
GO:0008270 "zinc ion binding" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=RCA
GO:0046686 "response to cadmium ion" evidence=RCA
TAIR|locus:2116432 AT4G26910 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
DICTYBASE|DDB_G0275029 odhB "dihydrolipoamide S-succinyltransferase" [Dictyostelium discoideum (taxid:44689)] Back     alignment and assigned GO terms
UNIPROTKB|P11179 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030326-1 dlst "dihydrolipoamide S-succinyltransferase" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1926170 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|E2R0H0 DLST "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
UNIPROTKB|Q9N0F1 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|P36957 DLST "Dihydrolipoyllysine-residue succinyltransferase component of 2-oxoglutarate dehydrogenase complex, mitochondrial" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
RGD|1359615 Dlst "dihydrolipoamide S-succinyltransferase (E2 component of 2-oxo-glutarate complex)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q9ZDY4ODO2_RICPR2, ., 3, ., 1, ., 6, 10.54960.69430.6458yesno
Q8H107ODO2B_ARATH2, ., 3, ., 1, ., 6, 10.88200.61390.4935yesno
Q68XI8ODO2_RICTY2, ., 3, ., 1, ., 6, 10.55720.69430.6507yesno
Q4L6C3ODO2_STAHJ2, ., 3, ., 1, ., 6, 10.50560.68900.6075yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer2.3.1.610.946
3rd Layer2.3.10.963

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
PRK05704407 PRK05704, PRK05704, dihydrolipoamide succinyltrans 1e-154
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 1e-148
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 1e-144
TIGR01347403 TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp 1e-142
COG0508404 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena 1e-100
pfam00198212 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases 3e-92
PRK11856411 PRK11856, PRK11856, branched-chain alpha-keto acid 8e-85
PRK11855547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 5e-77
PRK11854633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 2e-64
TIGR02927579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 1e-59
PRK11857306 PRK11857, PRK11857, dihydrolipoamide acetyltransfe 4e-54
TIGR01348546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 2e-53
PRK14843347 PRK14843, PRK14843, dihydrolipoamide acetyltransfe 2e-52
TIGR01349436 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase 2e-47
PLN02528416 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase 3e-35
PLN02744539 PLN02744, PLN02744, dihydrolipoyllysine-residue ac 1e-34
PLN02226463 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E 9e-27
cd0684974 cd06849, lipoyl_domain, Lipoyl domain of the dihyd 5e-18
PTZ00144418 PTZ00144, PTZ00144, dihydrolipoamide succinyltrans 3e-17
PRK05704 407 PRK05704, PRK05704, dihydrolipoamide succinyltrans 6e-17
TIGR01347 403 TIGR01347, sucB, 2-oxoglutarate dehydrogenase comp 2e-14
PRK12270 1228 PRK12270, kgd, alpha-ketoglutarate decarboxylase; 6e-14
COG0508 404 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogena 7e-14
PRK11856 411 PRK11856, PRK11856, branched-chain alpha-keto acid 2e-13
TIGR02927 579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 1e-11
TIGR02927 579 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogena 3e-11
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 5e-11
PRK11855 547 PRK11855, PRK11855, dihydrolipoamide acetyltransfe 7e-11
pfam0036473 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme 4e-09
PRK14875371 PRK14875, PRK14875, acetoin dehydrogenase E2 subun 8e-08
cd0666373 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_ 1e-07
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 5e-07
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 1e-06
PRK11892 464 PRK11892, PRK11892, pyruvate dehydrogenase subunit 4e-06
TIGR01348 546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 5e-06
TIGR01349 436 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase 7e-06
PRK11854 633 PRK11854, aceF, pyruvate dehydrogenase dihydrolipo 3e-05
TIGR01348 546 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase 1e-04
PLN02744 539 PLN02744, PLN02744, dihydrolipoyllysine-residue ac 4e-04
cd0685067 cd06850, biotinyl_domain, The biotinyl-domain or b 8e-04
TIGR027121201 TIGR02712, urea_carbox, urea carboxylase 0.001
cd0684896 cd06848, GCS_H, Glycine cleavage H-protein 0.002
COG0511140 COG0511, AccB, Biotin carboxyl carrier protein [Li 0.002
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information 
 Score =  440 bits (1134), Expect = e-154
 Identities = 155/229 (67%), Positives = 191/229 (83%)

Query: 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
           + VPMTRLRK +A RL ++QNT A+LTTFNEVDMT +M LR  YKDAF +KHGVKLG MS
Sbjct: 179 ERVPMTRLRKTIAERLLEAQNTTAMLTTFNEVDMTPVMDLRKQYKDAFEKKHGVKLGFMS 238

Query: 205 GFVKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE 264
            FVKA V AL+  P VNA IDGDDI+Y +Y DI  AVGT +GLVVPV+R++++++FAEIE
Sbjct: 239 FFVKAVVEALKRYPEVNASIDGDDIVYHNYYDIGIAVGTPRGLVVPVLRDADQLSFAEIE 298

Query: 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
           K+I+ LAKKA DG +SI+E+ GGTFTI+NGGV+GSL+STPIINPPQSAILGMH I  RP+
Sbjct: 299 KKIAELAKKARDGKLSIEELTGGTFTITNGGVFGSLMSTPIINPPQSAILGMHKIKERPV 358

Query: 325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
            V G +V RPMMY+AL+YDHR+IDG+EAV FL  IK+++EDP RLLLD+
Sbjct: 359 AVNGQIVIRPMMYLALSYDHRIIDGKEAVGFLVTIKELLEDPERLLLDL 407

Length = 407
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|215782 pfam00198, 2-oxoacid_dh, 2-oxoacid dehydrogenases acyltransferase (catalytic domain) Back     alignment and domain information
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|237002 PRK11857, PRK11857, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|184847 PRK14843, PRK14843, dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|215289 PLN02528, PLN02528, 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>gnl|CDD|177871 PLN02226, PLN02226, 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information
>gnl|CDD|133458 cd06849, lipoyl_domain, Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>gnl|CDD|240289 PTZ00144, PTZ00144, dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|235571 PRK05704, PRK05704, dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>gnl|CDD|233365 TIGR01347, sucB, 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>gnl|CDD|223582 COG0508, AceF, Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>gnl|CDD|237001 PRK11856, PRK11856, branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|200219 TIGR02927, SucB_Actino, 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|237000 PRK11855, PRK11855, dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>gnl|CDD|201182 pfam00364, Biotin_lipoyl, Biotin-requiring enzyme Back     alignment and domain information
>gnl|CDD|184875 PRK14875, PRK14875, acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>gnl|CDD|133456 cd06663, Biotinyl_lipoyl_domains, Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|237011 PRK11892, PRK11892, pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|233367 TIGR01349, PDHac_trf_mito, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|236999 PRK11854, aceF, pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>gnl|CDD|233366 TIGR01348, PDHac_trf_long, pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>gnl|CDD|215397 PLN02744, PLN02744, dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>gnl|CDD|133459 cd06850, biotinyl_domain, The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>gnl|CDD|233980 TIGR02712, urea_carbox, urea carboxylase Back     alignment and domain information
>gnl|CDD|133457 cd06848, GCS_H, Glycine cleavage H-protein Back     alignment and domain information
>gnl|CDD|223585 COG0511, AccB, Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 373
PLN02226463 2-oxoglutarate dehydrogenase E2 component 100.0
PTZ00144418 dihydrolipoamide succinyltransferase; Provisional 100.0
KOG0559457 consensus Dihydrolipoamide succinyltransferase (2- 100.0
PRK05704407 dihydrolipoamide succinyltransferase; Validated 100.0
TIGR01347403 sucB 2-oxoglutarate dehydrogenase complex dihydrol 100.0
PLN02744539 dihydrolipoyllysine-residue acetyltransferase comp 100.0
COG0508404 AceF Pyruvate/2-oxoglutarate dehydrogenase complex 100.0
PLN02528416 2-oxoisovalerate dehydrogenase E2 component 100.0
TIGR02927590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 100.0
TIGR01348546 PDHac_trf_long pyruvate dehydrogenase complex dihy 100.0
TIGR01349435 PDHac_trf_mito pyruvate dehydrogenase complex dihy 100.0
PRK11854633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 100.0
PRK11856411 branched-chain alpha-keto acid dehydrogenase subun 100.0
PRK11855547 dihydrolipoamide acetyltransferase; Reviewed 100.0
KOG0558474 consensus Dihydrolipoamide transacylase (alpha-ket 100.0
KOG0557470 consensus Dihydrolipoamide acetyltransferase [Ener 100.0
PF00198231 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransfe 100.0
PRK14843347 dihydrolipoamide acetyltransferase; Provisional 100.0
PRK11857306 dihydrolipoamide acetyltransferase; Reviewed 100.0
PRK12270 1228 kgd alpha-ketoglutarate decarboxylase; Reviewed 100.0
PRK13757219 chloramphenicol acetyltransferase; Provisional 99.96
PF00302206 CAT: Chloramphenicol acetyltransferase; InterPro: 99.96
COG4845219 Chloramphenicol O-acetyltransferase [Defense mecha 99.9
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 99.36
PRK14875371 acetoin dehydrogenase E2 subunit dihydrolipoyllysi 99.33
PRK0674883 hypothetical protein; Validated 99.06
PRK11892 464 pyruvate dehydrogenase subunit beta; Provisional 98.99
TIGR02927 590 SucB_Actino 2-oxoglutarate dehydrogenase, E2 compo 98.92
cd0666373 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains ar 98.92
PRK11854 633 aceF pyruvate dehydrogenase dihydrolipoyltransacet 98.85
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 98.79
PRK11855 547 dihydrolipoamide acetyltransferase; Reviewed 98.69
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.52
TIGR01348 546 PDHac_trf_long pyruvate dehydrogenase complex dihy 98.49
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 98.35
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 98.3
cd0685067 biotinyl_domain The biotinyl-domain or biotin carb 98.29
cd0684974 lipoyl_domain Lipoyl domain of the dihydrolipoyl a 98.28
PRK05641153 putative acetyl-CoA carboxylase biotin carboxyl ca 98.26
PLN02983274 biotin carboxyl carrier protein of acetyl-CoA carb 98.13
TIGR00531156 BCCP acetyl-CoA carboxylase, biotin carboxyl carri 98.04
PRK0705180 hypothetical protein; Validated 98.03
PRK14042596 pyruvate carboxylase subunit B; Provisional 98.01
PRK06302155 acetyl-CoA carboxylase biotin carboxyl carrier pro 97.98
TIGR01108582 oadA oxaloacetate decarboxylase alpha subunit. Thi 97.95
cd0684896 GCS_H Glycine cleavage H-protein. Glycine cleavage 97.95
TIGR027121201 urea_carbox urea carboxylase. Members of this fami 97.84
PRK14040593 oxaloacetate decarboxylase; Provisional 97.71
TIGR03077110 not_gcvH glycine cleavage protein H-like protein, 97.65
TIGR012351143 pyruv_carbox pyruvate carboxylase. This enzyme pla 97.62
PRK00624114 glycine cleavage system protein H; Provisional 97.54
PRK09282592 pyruvate carboxylase subunit B; Validated 97.31
PRK13380144 glycine cleavage system protein H; Provisional 97.24
PRK129991146 pyruvate carboxylase; Reviewed 97.12
PRK01202127 glycine cleavage system protein H; Provisional 96.91
TIGR00527127 gcvH glycine cleavage system H protein. The genome 96.81
PF1353350 Biotin_lipoyl_2: Biotin-lipoyl like 96.47
PF01597122 GCV_H: Glycine cleavage H-protein; InterPro: IPR00 96.11
COG4770645 Acetyl/propionyl-CoA carboxylase, alpha subunit [L 96.09
COG10381149 PycA Pyruvate carboxylase [Energy production and c 95.81
COG0509131 GcvH Glycine cleavage system H protein (lipoate-bi 95.59
KOG03691176 consensus Pyruvate carboxylase [Energy production 95.15
PF13375101 RnfC_N: RnfC Barrel sandwich hybrid domain 94.43
PRK0822570 acetyl-CoA carboxylase biotin carboxyl carrier pro 93.73
KOG0368 2196 consensus Acetyl-CoA carboxylase [Lipid transport 93.27
PF07247480 AATase: Alcohol acetyltransferase; InterPro: IPR01 92.33
KOG0238670 consensus 3-Methylcrotonyl-CoA carboxylase, biotin 91.86
PRK0674883 hypothetical protein; Validated 91.8
PF09891150 DUF2118: Uncharacterized protein conserved in arch 90.2
COG3608331 Predicted deacylase [General function prediction o 89.91
PRK0705180 hypothetical protein; Validated 89.09
cd06250359 M14_PaAOTO_like An uncharacterized subgroup of the 89.03
cd06253298 M14_ASTE_ASPA_like_3 A functionally uncharacterize 88.16
TIGR02946446 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT. This b 87.82
TIGR03309256 matur_yqeB selenium-dependent molybdenum hydroxyla 87.47
TIGR02971327 heterocyst_DevB ABC exporter membrane fusion prote 86.58
cd06251287 M14_ASTE_ASPA_like_1 A functionally uncharacterize 86.3
PRK09783409 copper/silver efflux system membrane fusion protei 86.22
PF05896257 NQRA: Na(+)-translocating NADH-quinone reductase s 85.72
PF0783175 PYNP_C: Pyrimidine nucleoside phosphorylase C-term 85.54
PF12700328 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 85.38
PF00668 301 Condensation: Condensation domain; InterPro: IPR00 85.25
TIGR02994325 ectoine_eutE ectoine utilization protein EutE. Mem 84.74
TIGR00998334 8a0101 efflux pump membrane protein (multidrug res 84.73
TIGR01936 447 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translo 84.51
cd06254288 M14_ASTE_ASPA_like_4 A functionally uncharacterize 84.25
PRK0588971 putative acetyl-CoA carboxylase biotin carboxyl ca 84.21
PF0036474 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: 83.82
COG0511140 AccB Biotin carboxyl carrier protein [Lipid metabo 83.78
PRK06549130 acetyl-CoA carboxylase biotin carboxyl carrier pro 83.73
cd06252316 M14_ASTE_ASPA_like_2 A functionally uncharacterize 83.53
cd06255293 M14_ASTE_ASPA_like_5 A functionally uncharacterize 83.3
PRK10559310 p-hydroxybenzoic acid efflux subunit AaeA; Provisi 83.17
COG4072161 Uncharacterized protein conserved in archaea [Func 82.98
PRK05352 448 Na(+)-translocating NADH-quinone reductase subunit 82.92
PF0274988 QRPTase_N: Quinolinate phosphoribosyl transferase, 82.02
PF00529305 HlyD: HlyD family secretion protein the correspond 80.93
>PLN02226 2-oxoglutarate dehydrogenase E2 component Back     alignment and domain information 
Probab=100.00  E-value=6.7e-78  Score=607.55  Aligned_cols=300  Identities=85%  Similarity=1.258  Sum_probs=284.5

Q ss_pred             CccccceeeeccCCCceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee-------
Q 017358           74 SFIGSRSRLFSSDSGDLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN-------  146 (373)
Q Consensus        74 ~~~~~~~r~~~~~~~~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~-------  146 (373)
                      +.-++|.|.|....+...+|+||++|++|+||+|.+|+|++||.|++||+||+|||||+++||+||++|+|.+       
T Consensus        75 ~~~~~~~~~~~~~~~~m~~i~mP~lg~~~~eG~I~~w~v~~GD~V~~Gq~L~~VEtdK~~~eI~Ap~~G~v~~ilv~eGd  154 (463)
T PLN02226         75 STLQRWVRPFSSESGDTVEAVVPHMGESITDGTLATFLKKPGERVQADEAIAQIETDKVTIDIASPASGVIQEFLVKEGD  154 (463)
T ss_pred             hhhhhcccccccccCCceEEecCCCCCCcceEEEEEEEeCCCCEecCCCEEEEEEecceeeEEecCCCeEEEEEEeCCCC
Confidence            3446777888765444489999999999999999999999999999999999999999999999999999977       


Q ss_pred             --------------------------------------------------------------------------------
Q 017358          147 --------------------------------------------------------------------------------  146 (373)
Q Consensus       147 --------------------------------------------------------------------------------  146 (373)
                                                                                                      
T Consensus       155 ~V~vG~~L~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~asp~~r~~~~~~~~~~~~~~~~~~~~~~~~~~  234 (463)
T PLN02226        155 TVEPGTKVAIISKSEDAASQVTPSQKIPETTDPKPSPPAEDKQKPKVESAPVAEKPKAPSSPPPPKQSAKEPQLPPKERE  234 (463)
T ss_pred             EecCCCEEEEeccCCccccccCccCCCCCCCCCCCCCccccccccCCCcchhhccccCCCCCCCCcccccCcccccCCCc
Confidence                                                                                            


Q ss_pred             --cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEE
Q 017358          147 --VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVI  224 (373)
Q Consensus       147 --vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i  224 (373)
                        +|++++||.||++|++|++++|||+++.++|+|+|+++|+++|+.+.++.|.++|+++|++||+++||++||++|+.|
T Consensus       235 ~~ipls~~Rk~IA~~M~~S~~tiPh~t~~~evDvt~L~~lR~~l~~~~~~~~g~klS~~~~liKAva~AL~~~P~lNa~~  314 (463)
T PLN02226        235 RRVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSQYKDAFYEKHGVKLGLMSGFIKAAVSALQHQPVVNAVI  314 (463)
T ss_pred             eeeeChHHHHHHHHHHHHHHhcCCEEEEEEEEEcHHHHHHHHHHHhhhhhhcCCcccHHHHHHHHHHHHHHhCCHhheEE
Confidence              025678999999999999999999999999999999999999987666678999999999999999999999999999


Q ss_pred             eCCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCccc
Q 017358          225 DGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTP  304 (373)
Q Consensus       225 ~~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tp  304 (373)
                      +++.+++++++|||+||++++||++|||++++++++.||+++++++++++|+|+|+++|++||||||||+|++|+++|+|
T Consensus       315 ~~~~i~~~~~vnIGvAV~t~~GLvVPVIr~ad~~sl~eIa~ei~~L~~kAR~gkL~~~dl~GGTfTISNlG~~Gv~~ftP  394 (463)
T PLN02226        315 DGDDIIYRDYVDISIAVGTSKGLVVPVIRGADKMNFAEIEKTINGLAKKANEGTISIDEMAGGSFTVSNGGVYGSLISTP  394 (463)
T ss_pred             cCCEEEEeCcccEEEEEECCCCEEeccCCCcccCCHHHHHHHHHHHHHHHHcCCCCHHHhCCCeEEEECCCcccccceec
Confidence            99899999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358          305 IINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI  373 (373)
Q Consensus       305 ii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~  373 (373)
                      ||||||+|||++|+++++|++.||++++|++|+|||+||||++||+++|+||++|+++||+|+.||+++
T Consensus       395 IInpPqvAILgvG~i~~~pvv~~g~i~~r~~m~lsLs~DHRVIDGa~aA~FL~~lk~~LE~P~~LLl~~  463 (463)
T PLN02226        395 IINPPQSAILGMHSIVSRPMVVGGSVVPRPMMYVALTYDHRLIDGREAVYFLRRVKDVVEDPQRLLLDI  463 (463)
T ss_pred             cccCCcEEEEEcccceEEEEEECCEEEEEeEEEEeEecchhhhCcHHHHHHHHHHHHHhcCHHHHhhcC
Confidence            999999999999999999999999999999999999999999999999999999999999999998874

>PTZ00144 dihydrolipoamide succinyltransferase; Provisional Back     alignment and domain information
>KOG0559 consensus Dihydrolipoamide succinyltransferase (2-oxoglutarate dehydrogenase, E2 subunit) [Energy production and conversion] Back     alignment and domain information
>PRK05704 dihydrolipoamide succinyltransferase; Validated Back     alignment and domain information
>TIGR01347 sucB 2-oxoglutarate dehydrogenase complex dihydrolipoamide succinyltransferase (E2 component) Back     alignment and domain information
>PLN02744 dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase complex Back     alignment and domain information
>COG0508 AceF Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes [Energy production and conversion] Back     alignment and domain information
>PLN02528 2-oxoisovalerate dehydrogenase E2 component Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>TIGR01349 PDHac_trf_mito pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK11856 branched-chain alpha-keto acid dehydrogenase subunit E2; Reviewed Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>KOG0558 consensus Dihydrolipoamide transacylase (alpha-keto acid dehydrogenase E2 subunit) [Energy production and conversion] Back     alignment and domain information
>KOG0557 consensus Dihydrolipoamide acetyltransferase [Energy production and conversion] Back     alignment and domain information
>PF00198 2-oxoacid_dh: 2-oxoacid dehydrogenases acyltransferase (catalytic domain); InterPro: IPR001078 This domain is found in the lipoamide acyltransferase component of the branched-chain alpha-keto acid dehydrogenase complex 2 Back     alignment and domain information
>PRK14843 dihydrolipoamide acetyltransferase; Provisional Back     alignment and domain information
>PRK11857 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK12270 kgd alpha-ketoglutarate decarboxylase; Reviewed Back     alignment and domain information
>PRK13757 chloramphenicol acetyltransferase; Provisional Back     alignment and domain information
>PF00302 CAT: Chloramphenicol acetyltransferase; InterPro: IPR001707 Chloramphenicol acetyltransferase (CAT) (2 Back     alignment and domain information
>COG4845 Chloramphenicol O-acetyltransferase [Defense mechanisms] Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>PRK14875 acetoin dehydrogenase E2 subunit dihydrolipoyllysine-residue acetyltransferase; Provisional Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>PRK11892 pyruvate dehydrogenase subunit beta; Provisional Back     alignment and domain information
>TIGR02927 SucB_Actino 2-oxoglutarate dehydrogenase, E2 component, dihydrolipoamide succinyltransferase Back     alignment and domain information
>cd06663 Biotinyl_lipoyl_domains Biotinyl_lipoyl_domains are present in biotin-dependent carboxylases/decarboxylases, the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases, and the H-protein of the glycine cleavage system (GCS) Back     alignment and domain information
>PRK11854 aceF pyruvate dehydrogenase dihydrolipoyltransacetylase; Validated Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PRK11855 dihydrolipoamide acetyltransferase; Reviewed Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR01348 PDHac_trf_long pyruvate dehydrogenase complex dihydrolipoamide acetyltransferase, long form Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06850 biotinyl_domain The biotinyl-domain or biotin carboxyl carrier protein (BCCP) domain is present in all biotin-dependent enzymes, such as acetyl-CoA carboxylase, pyruvate carboxylase, propionyl-CoA carboxylase, methylcrotonyl-CoA carboxylase, geranyl-CoA carboxylase, oxaloacetate decarboxylase, methylmalonyl-CoA decarboxylase, transcarboxylase and urea amidolyase Back     alignment and domain information
>cd06849 lipoyl_domain Lipoyl domain of the dihydrolipoyl acyltransferase component (E2) of 2-oxo acid dehydrogenases Back     alignment and domain information
>PRK05641 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>PLN02983 biotin carboxyl carrier protein of acetyl-CoA carboxylase Back     alignment and domain information
>TIGR00531 BCCP acetyl-CoA carboxylase, biotin carboxyl carrier protein Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>PRK14042 pyruvate carboxylase subunit B; Provisional Back     alignment and domain information
>PRK06302 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>TIGR01108 oadA oxaloacetate decarboxylase alpha subunit Back     alignment and domain information
>cd06848 GCS_H Glycine cleavage H-protein Back     alignment and domain information
>TIGR02712 urea_carbox urea carboxylase Back     alignment and domain information
>PRK14040 oxaloacetate decarboxylase; Provisional Back     alignment and domain information
>TIGR03077 not_gcvH glycine cleavage protein H-like protein, Chlamydial Back     alignment and domain information
>TIGR01235 pyruv_carbox pyruvate carboxylase Back     alignment and domain information
>PRK00624 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK09282 pyruvate carboxylase subunit B; Validated Back     alignment and domain information
>PRK13380 glycine cleavage system protein H; Provisional Back     alignment and domain information
>PRK12999 pyruvate carboxylase; Reviewed Back     alignment and domain information
>PRK01202 glycine cleavage system protein H; Provisional Back     alignment and domain information
>TIGR00527 gcvH glycine cleavage system H protein Back     alignment and domain information
>PF13533 Biotin_lipoyl_2: Biotin-lipoyl like Back     alignment and domain information
>PF01597 GCV_H: Glycine cleavage H-protein; InterPro: IPR002930 This is a family of glycine cleavage H-proteins, part of the glycine cleavage multienzyme complex (GCV) found in bacteria and the mitochondria of eukaryotes Back     alignment and domain information
>COG4770 Acetyl/propionyl-CoA carboxylase, alpha subunit [Lipid metabolism] Back     alignment and domain information
>COG1038 PycA Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>COG0509 GcvH Glycine cleavage system H protein (lipoate-binding) [Amino acid transport and metabolism] Back     alignment and domain information
>KOG0369 consensus Pyruvate carboxylase [Energy production and conversion] Back     alignment and domain information
>PF13375 RnfC_N: RnfC Barrel sandwich hybrid domain Back     alignment and domain information
>PRK08225 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>KOG0368 consensus Acetyl-CoA carboxylase [Lipid transport and metabolism] Back     alignment and domain information
>PF07247 AATase: Alcohol acetyltransferase; InterPro: IPR010828 This family contains a number of alcohol acetyltransferase (2 Back     alignment and domain information
>KOG0238 consensus 3-Methylcrotonyl-CoA carboxylase, biotin-containing subunit/Propionyl-CoA carboxylase, alpha chain/Acetyl-CoA carboxylase, biotin carboxylase subunit [Lipid transport and metabolism; Amino acid transport and metabolism] Back     alignment and domain information
>PRK06748 hypothetical protein; Validated Back     alignment and domain information
>PF09891 DUF2118: Uncharacterized protein conserved in archaea (DUF2118); InterPro: IPR019217 This entry represents a family of hypothetical proteins of unknown function Back     alignment and domain information
>COG3608 Predicted deacylase [General function prediction only] Back     alignment and domain information
>PRK07051 hypothetical protein; Validated Back     alignment and domain information
>cd06250 M14_PaAOTO_like An uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the the M14 family of metallocarboxypeptidases Back     alignment and domain information
>cd06253 M14_ASTE_ASPA_like_3 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>TIGR02946 acyl_WS_DGAT acyltransferase, WS/DGAT/MGAT Back     alignment and domain information
>TIGR03309 matur_yqeB selenium-dependent molybdenum hydroxylase system protein, YqeB family Back     alignment and domain information
>TIGR02971 heterocyst_DevB ABC exporter membrane fusion protein, DevB family Back     alignment and domain information
>cd06251 M14_ASTE_ASPA_like_1 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>PRK09783 copper/silver efflux system membrane fusion protein CusB; Provisional Back     alignment and domain information
>PF05896 NQRA: Na(+)-translocating NADH-quinone reductase subunit A (NQRA); InterPro: IPR008703 This family consists of several bacterial Na+-translocating NADH-quinone reductase subunit A (NQRA) proteins Back     alignment and domain information
>PF07831 PYNP_C: Pyrimidine nucleoside phosphorylase C-terminal domain; InterPro: IPR013102 This domain is found at the C-terminal end of the large alpha/beta domain making up various pyrimidine nucleoside phosphorylases [, ] Back     alignment and domain information
>PF12700 HlyD_2: HlyD family secretion protein; PDB: 3LNN_B 4DK0_A 4DK1_C 3FPP_B 2K32_A 2K33_A 3OW7_B 3OOC_A 3T53_B 4DNT_C Back     alignment and domain information
>PF00668 Condensation: Condensation domain; InterPro: IPR001242 This domain is found in many multi-domain enzymes which synthesize peptide antibiotics Back     alignment and domain information
>TIGR02994 ectoine_eutE ectoine utilization protein EutE Back     alignment and domain information
>TIGR00998 8a0101 efflux pump membrane protein (multidrug resistance protein A) Back     alignment and domain information
>TIGR01936 nqrA NADH:ubiquinone oxidoreductase, Na(+)-translocating, A subunit Back     alignment and domain information
>cd06254 M14_ASTE_ASPA_like_4 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>PRK05889 putative acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Provisional Back     alignment and domain information
>PF00364 Biotin_lipoyl: Biotin-requiring enzyme; InterPro: IPR000089 The biotin / lipoyl attachment domain has a conserved lysine residue that binds biotin or lipoic acid Back     alignment and domain information
>COG0511 AccB Biotin carboxyl carrier protein [Lipid metabolism] Back     alignment and domain information
>PRK06549 acetyl-CoA carboxylase biotin carboxyl carrier protein subunit; Validated Back     alignment and domain information
>cd06252 M14_ASTE_ASPA_like_2 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>cd06255 M14_ASTE_ASPA_like_5 A functionally uncharacterized subgroup of the Succinylglutamate desuccinylase (ASTE)/aspartoacylase (ASPA) subfamily which is part of the M14 family of metallocarboxypeptidases Back     alignment and domain information
>PRK10559 p-hydroxybenzoic acid efflux subunit AaeA; Provisional Back     alignment and domain information
>COG4072 Uncharacterized protein conserved in archaea [Function unknown] Back     alignment and domain information
>PRK05352 Na(+)-translocating NADH-quinone reductase subunit A; Provisional Back     alignment and domain information
>PF02749 QRPTase_N: Quinolinate phosphoribosyl transferase, N-terminal domain; InterPro: IPR022412 Quinolinate phosphoribosyl transferase (QPRTase) or nicotinate-nucleotide pyrophosphorylase 2 Back     alignment and domain information
>PF00529 HlyD: HlyD family secretion protein the corresponding Prosite entry Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
1c4t_A233 Catalytic Domain From Trimeric Dihydrolipoamide Suc 2e-71
3duf_I428 Snapshots Of Catalysis In The E1 Subunit Of The Pyr 1e-34
1b5s_A242 Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalyt 1e-34
3mae_A256 Crystal Structure Of Probable Dihydrolipamide Acety 3e-33
1dpc_A243 Crystallographic And Enzymatic Investigations On Th 2e-28
3l60_A250 Crystal Structure Of Branched-Chain Alpha-Keto Acid 1e-27
1dpd_A243 Crystallographic And Enzymatic Investigations On Th 2e-27
1eaa_A243 Atomic Structure Of The Cubic Core Of The Pyruvate 4e-27
1dpb_A243 Crystallographic And Enzymatic Investigations On Th 2e-26
3rqc_A224 Crystal Structure Of The Catalytic Core Of The 2-Ox 8e-26
2ihw_A262 Crystal Structure Of A Cubic Core Of The Dihydrolip 2e-23
3b8k_A239 Structure Of The Truncated Human Dihydrolipoyl Acet 8e-21
2xt6_A 1113 Crystal Structure Of Mycobacterium Smegmatis Alpha- 2e-09
1ghj_A79 Solution Structure Of The Lipoyl Domain Of The 2- O 8e-07
1pmr_A80 Lipoyl Domain From The Dihydrolipoyl Succinyltransf 1e-06
1lab_A80 Three-Dimensional Structure Of The Lipoyl Domain Fr 3e-04
2l5t_A77 Solution Nmr Structure Of E2 Lipoyl Domain From The 5e-04
>pdb|1C4T|A Chain A, Catalytic Domain From Trimeric Dihydrolipoamide Succinyltransferase Length = 233 Back     alignment and structure 
Iteration: 1

 Score =  266 bits (680), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 129/229 (56%), Positives = 169/229 (73%)
Query: 145 QNVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMS 204
           + VPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG MS
Sbjct: 5   KRVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMS 64
Query: 205 GFVKAAVSALQHQPVVNAVXXXXXXXXXXXXXXSFAVGTKKGLVVPVIRNSERMNFAEIE 264
            +VKA V AL+  P VNA               S AV T +GLV PV+R+ + +  A+IE
Sbjct: 65  FYVKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIE 124
Query: 265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPM 324
           K+I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM
Sbjct: 125 KKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPM 184
Query: 325 VVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
            V G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 185 AVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>pdb|3DUF|I Chain I, Snapshots Of Catalysis In The E1 Subunit Of The Pyruvate Dehydrogenase Multi-Enzyme Complex Length = 428 Back     alignment and structure
>pdb|1B5S|A Chain A, Dihydrolipoyl Transacetylase (E.C.2.3.1.12) Catalytic Domain (Residues 184-425) From Bacillus Stearothermophilus Length = 242 Back     alignment and structure
>pdb|3MAE|A Chain A, Crystal Structure Of Probable Dihydrolipamide Acetyltransferase From Listeria Monocytogenes 4b F2365 Length = 256 Back     alignment and structure
>pdb|1DPC|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|3L60|A Chain A, Crystal Structure Of Branched-Chain Alpha-Keto Acid Dehydrogenase Subunit E2 From Mycobacterium Tuberculosis Length = 250 Back     alignment and structure
>pdb|1DPD|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|1EAA|A Chain A, Atomic Structure Of The Cubic Core Of The Pyruvate Dehydrogenase Multienzyme Complex Length = 243 Back     alignment and structure
>pdb|1DPB|A Chain A, Crystallographic And Enzymatic Investigations On The Role Of Ser558, His610 And Asn614 In The Catalytic Mechanism Of Azotobacter Vinelandii Dihydrolipoamide Acetyltransferase (E2p) Length = 243 Back     alignment and structure
>pdb|3RQC|A Chain A, Crystal Structure Of The Catalytic Core Of The 2-Oxoacid Dehydrogenase Multienzyme Complex From Thermoplasma Acidophilum Length = 224 Back     alignment and structure
>pdb|2IHW|A Chain A, Crystal Structure Of A Cubic Core Of The Dihydrolipoamide Acyltransferase (E2b) Component In The Branched-Chain Alpha-Ketoacid Dehydrogenase Complex (Bckdc), Apo Form Length = 262 Back     alignment and structure
>pdb|3B8K|A Chain A, Structure Of The Truncated Human Dihydrolipoyl Acetyltransferase (E2) Length = 239 Back     alignment and structure
>pdb|2XT6|A Chain A, Crystal Structure Of Mycobacterium Smegmatis Alpha-Ketoglutarate Decarboxylase Homodimer (Orthorhombic Form) Length = 1113 Back     alignment and structure
>pdb|1GHJ|A Chain A, Solution Structure Of The Lipoyl Domain Of The 2- Oxoglutarate Dehydrogenase Complex From Azotobacter Vineland Ii, Nmr, Minimized Average Structure Length = 79 Back     alignment and structure
>pdb|1PMR|A Chain A, Lipoyl Domain From The Dihydrolipoyl Succinyltransferase Component Of The 2-Oxoglutarate Dehydrogenase Multienzyme Complex Of Escherichia Coli, Nmr, 25 Structures Length = 80 Back     alignment and structure
>pdb|1LAB|A Chain A, Three-Dimensional Structure Of The Lipoyl Domain From Bacillus Stearothermophilus Pyruvate Dehydrogenase Multienzyme Complex Length = 80 Back     alignment and structure
>pdb|2L5T|A Chain A, Solution Nmr Structure Of E2 Lipoyl Domain From Thermoplasma Acidophilum Length = 77 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 1e-161
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 1e-144
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 1e-129
3dva_I 428 Dihydrolipoyllysine-residue acetyltransferase comp 9e-16
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 1e-129
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 1e-122
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 1e-111
2ii3_A262 Lipoamide acyltransferase component of branched-C 1e-105
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 6e-92
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 1e-30
3cla_A213 Type III chloramphenicol acetyltransferase; transf 4e-29
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 4e-22
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 8e-22
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 1e-21
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 7e-16
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 2e-15
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 3e-15
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 5e-15
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 3e-09
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 1e-08
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 1e-08
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 3e-08
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 4e-08
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 1e-07
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 2e-06
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 6e-06
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 7e-06
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 7e-06
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Length = 233 Back     alignment and structure
 Score =  450 bits (1160), Expect = e-161
 Identities = 137/227 (60%), Positives = 180/227 (79%)

Query: 147 VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 206
           VPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG MS +
Sbjct: 7   VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66

Query: 207 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKE 266
           VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +GLV PV+R+ + +  A+IEK+
Sbjct: 67  VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKK 126

Query: 267 ISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV 326
           I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM V
Sbjct: 127 IKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAV 186

Query: 327 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
            G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 187 NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Length = 256 Back     alignment and structure
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Back     alignment and structure
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Length = 428 Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Length = 224 Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} Length = 250 Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Length = 243 Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Length = 262 Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Length = 239 Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Length = 219 Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Length = 213 Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Length = 217 Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Length = 79 Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Length = 77 Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Length = 1113 Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Length = 93 Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Length = 128 Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 98 Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Length = 108 Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100 Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Length = 84 Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Length = 87 Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Length = 85 Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Length = 81 Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Length = 79 Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Length = 80 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
3dva_I428 Dihydrolipoyllysine-residue acetyltransferase comp 100.0
1scz_A233 E2, dihydrolipoamide succinyltransferase; COA-depe 100.0
3mae_A256 2-oxoisovalerate dehydrogenase E2 component, dihyd 100.0
1dpb_A243 Dihydrolipoyl-transacetylase; dihydrolipoamide ace 100.0
3l60_A250 Branched-chain alpha-keto acid dehydrogenase; stru 100.0
2ii3_A262 Lipoamide acyltransferase component of branched-C 100.0
3rqc_A224 Probable lipoamide acyltransferase; alpha beta fol 100.0
3b8k_A239 PDCE2;, dihydrolipoyllysine-residue acetyltransfer 100.0
2xt6_A 1113 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET 100.0
1q23_A219 Chloramphenicol acetyltransferase; CAT I, trimer, 100.0
3cla_A213 Type III chloramphenicol acetyltransferase; transf 100.0
2i9d_A217 Chloramphenicol acetyltransferase; structural geno 100.0
2dnc_A98 Pyruvate dehydrogenase protein X component; lipoic 99.4
2dne_A108 Dihydrolipoyllysine-residue acetyltransferase comp 99.39
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 99.37
1y8o_B128 Dihydrolipoyllysine-residue acetyltransferase COM 99.37
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 99.33
1zy8_K229 Pyruvate dehydrogenase protein X component, mitoch 99.31
1pmr_A80 Dihydrolipoyl succinyltransferase; 2-oxoglutarate 99.28
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 99.23
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 99.14
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 99.14
1gjx_A81 Pyruvate dehydrogenase; oxidoreductase, lipoyl dom 99.05
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 99.02
2k7v_A85 Dihydrolipoyllysine-residue acetyltransferase comp 98.73
2kcc_A84 Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, 98.48
2jku_A94 Propionyl-COA carboxylase alpha chain, mitochondri 98.48
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 98.35
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 98.29
2d5d_A74 Methylmalonyl-COA decarboxylase gamma chain; bioti 98.2
1dcz_A77 Transcarboxylase 1.3S subunit; antiparallel beta s 98.14
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 98.11
2ejm_A99 Methylcrotonoyl-COA carboxylase subunit alpha; bio 98.05
3n6r_A681 Propionyl-COA carboxylase, alpha subunit; protein 98.0
3va7_A1236 KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A 97.94
1zko_A136 Glycine cleavage system H protein; TM0212, structu 97.84
3u9t_A675 MCC alpha, methylcrotonyl-COA carboxylase, alpha-s 97.83
1hpc_A131 H protein of the glycine cleavage system; transit 97.81
3hbl_A1150 Pyruvate carboxylase; TIM barrel, ligase; HET: BTI 97.78
1onl_A128 Glycine cleavage system H protein; hybrid barrel-s 97.76
3a7l_A128 H-protein, glycine cleavage system H protein; lipo 97.75
3bg3_A718 Pyruvate carboxylase, mitochondrial; TIM barrel, A 97.51
2qf7_A1165 Pyruvate carboxylase protein; multi-domain, multi- 97.32
2k32_A116 A; NMR {Campylobacter jejuni} PDB: 2k33_A* 97.21
3klr_A125 Glycine cleavage system H protein; antiparallel be 97.01
3mxu_A143 Glycine cleavage system H protein; seattle structu 96.87
3tzu_A137 GCVH, glycine cleavage system H protein 1; ssgcid, 96.76
3hgb_A155 Glycine cleavage system H protein; ssgcid, niaid, 96.5
3lnn_A359 Membrane fusion protein (MFP) heavy metal cation Z 92.25
3na6_A331 Succinylglutamate desuccinylase/aspartoacylase; st 91.9
3fpp_A341 Macrolide-specific efflux protein MACA; hexameric 91.67
3fmc_A368 Putative succinylglutamate desuccinylase / aspart; 91.23
3ne5_B413 Cation efflux system protein CUSB; transmembrane h 90.79
3cdx_A354 Succinylglutamatedesuccinylase/aspartoacylase; str 90.56
3d4r_A169 Domain of unknown function from the PFAM-B_34464; 87.66
2f1m_A277 Acriflavine resistance protein A; helical hairpin, 86.35
2l5t_A77 Lipoamide acyltransferase; E2 lipoyl domain; NMR { 85.86
1ghj_A79 E2, E2, the dihydrolipoamide succinyltransferase c 83.28
1qjo_A80 Dihydrolipoamide acetyltransferase; lipoyl domain, 82.79
1z6h_A72 Biotin/lipoyl attachment protein; solution structu 82.25
2qj8_A332 MLR6093 protein; structural genomics, joint center 82.11
3crk_C87 Dihydrolipoyllysine-residue acetyltransferase COM 82.11
1k8m_A93 E2 component of branched-chain ahpha-ketoacid dehy 81.16
2dn8_A100 Acetyl-COA carboxylase 2; biotin required enzyme, 80.67
1bdo_A80 Acetyl-COA carboxylase; BCCPSC, carboxyl transfera 80.61
1iyu_A79 E2P, dihydrolipoamide acetyltransferase component 80.33
>3dva_I Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; oxidoreductase, multienzyme complex; HET: TPW; 2.35A {Bacillus stearothermophilus} PDB: 3dv0_I* 3duf_I* 1b5s_A 1lab_A 1lac_A 1w3d_A Back     alignment and structure
Probab=100.00  E-value=8.5e-74  Score=578.78  Aligned_cols=284  Identities=36%  Similarity=0.641  Sum_probs=0.0

Q ss_pred             ceEEEEccCCCCCCCeeeEeEEeecCCCeeecCCceeeeecCceeeEEecCCCceeee----------------------
Q 017358           89 DLVDAVVPFMGESITDGTLAKFLKQPGDRVEMDEPIAQIETDKVTIDVASPQAGVIQN----------------------  146 (373)
Q Consensus        89 ~~~~~~~p~~g~~~~eg~i~~w~~~~Gd~V~~gd~l~~vEtdK~~~ei~sp~~G~l~~----------------------  146 (373)
                      |.++|+||+||++|+||+|.+|+|++||.|++||+||+|||||+++|++||++|+|.+                      
T Consensus         1 M~~~i~mP~lg~~~~eg~i~~w~v~~Gd~V~~gd~l~~vEt~K~~~~i~ap~~G~v~~i~v~~G~~V~~G~~l~~i~~~~   80 (428)
T 3dva_I            1 MAFEFKLPDIGEGIHEGEIVKWFVKPGDEVNEDDVLCEVQNDKAVVEIPSPVKGKVLEILVPEGTVATVGQTLITLDAPG   80 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCeeEEcCCCCCCCccEEEEEEEcCCCCEECCCCEEEEEEeCCeeEEEecCCCeEEEEEEeCCCCEeCCCCEEEEEecCC
Confidence            5689999999999999999999999999999999999999999999999888888755                      


Q ss_pred             --------------------------------------------------------------------------------
Q 017358          147 --------------------------------------------------------------------------------  146 (373)
Q Consensus       147 --------------------------------------------------------------------------------  146 (373)
                                                                                                      
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~asP~~R~lA~e~gvdl~~v~gtG~~GrI~k  160 (428)
T 3dva_I           81 YENMTFKGQEQEEAKKEEKTETVSKEEKVDAVAPNAPAAEAEAGPNRRVIAMPSVRKYAREKGVDIRLVQGTGKNGRVLK  160 (428)
T ss_dssp             -----------------------------------------------CCCCCHHHHHHHHHTTCCGGGSCCCSTTSCCCT
T ss_pred             ccccccccccccccccCCCcccCCccccccCCCccccccccccccccccccCHHHHHHHHHcCCCHHHCCCCCCCCceeH
Confidence                                                                                            


Q ss_pred             ----------------------------------------cchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHH
Q 017358          147 ----------------------------------------VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRS  186 (373)
Q Consensus       147 ----------------------------------------vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk  186 (373)
                                                              +|+++|||.||++|++|++++|||+++.+||+|+|+++|+
T Consensus       161 ~DV~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~s~~Rk~ia~~m~~S~~~~P~~~~~~evDvt~l~~~rk  240 (428)
T 3dva_I          161 EDIDAFLAGGAKPAPAAAEEKAAPAAAKPATTEGEFPETREKMSGIRRAIAKAMVHSKHTAPHVTLMDEADVTKLVAHRK  240 (428)
T ss_dssp             TTTTTTSCC-----------------------------------------------------------------------
T ss_pred             HHHHHHhhccccccccccccccccCCCCccccccCCccccccCcHHHHHHHHHHHHhcccCCeEEEEEEEeHHHHHHHHH
Confidence                                                    0356789999999999999999999999999999999999


Q ss_pred             HHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEeC--CeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHH
Q 017358          187 DYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVIDG--DDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIE  264 (373)
Q Consensus       187 ~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~~--~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia  264 (373)
                      ++|+. .++.|.|+||+++++||+++||++||+||++|++  ++|++|+++|||+||++++||++|||++++++++.+|+
T Consensus       241 ~~~~~-~~~~g~kls~~~~~ikAva~Al~~~P~~Na~~~~~~~~i~~~~~v~igiAV~t~~GL~vPvi~~a~~~sl~eia  319 (428)
T 3dva_I          241 KFKAI-AAEKGIKLTFLPYVVKALVSALREYPVLNTSIDDETEEIIQKHYYNIGIAADTDRGLLVPVIKHADRKPIFALA  319 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             Hhhhh-HhhcCCCcCHHHHHHHHHHHHHHhCHHhhheEecCCCeEEEcCccCeEEEEEcCCceEEeeeccCCCCCHHHHH
Confidence            98864 3456899999999999999999999999999987  79999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccccCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcc
Q 017358          265 KEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDH  344 (373)
Q Consensus       265 ~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpii~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DH  344 (373)
                      ++++++.+++|+|+|+++|+.||||||||+||+|+++|+||+||||++||++|+++++|++.||++++|++|||||+|||
T Consensus       320 ~~~~~l~~~ar~gkL~~~e~~ggtftISnlG~~G~~~ftpIin~pq~aIl~vG~i~~~pv~~~g~i~~r~~m~lsls~DH  399 (428)
T 3dva_I          320 QEINELAEKARDGKLTPGEMKGASCTITNIGSAGGQWFTPVINHPEVAILGIGRIAEKPIVRDGEIVAAPMLALSLSFDH  399 (428)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHHHHHcCCCCccccCCCEEEEEcCCCCCccceEeecCCCCceEEEccccEEEEEEECCEEEEeeeEEEEEEecc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358          345 RLIDGREAVFFLRRIKDIVEDPRRLLLDI  373 (373)
Q Consensus       345 RvvDGa~aarFl~~lk~~Le~P~~lll~~  373 (373)
                      |+|||+|+|+||++|+++||||+.||+++
T Consensus       400 RviDG~~aa~Fl~~lk~~Le~P~~lll~~  428 (428)
T 3dva_I          400 RMIDGATAQKALNHIKRLLSDPELLLMEA  428 (428)
T ss_dssp             -----------------------------
T ss_pred             cccchHHHHHHHHHHHHHHhCHHHHhhcC
Confidence            99999999999999999999999998863
>1scz_A E2, dihydrolipoamide succinyltransferase; COA-dependent acyltransferase, CAT-like, alpha and beta (2 L mixed beta-sheeet of 6 strands; 2.20A {Escherichia coli} SCOP: c.43.1.1 PDB: 1e2o_A 1c4t_A Back     alignment and structure
>3mae_A 2-oxoisovalerate dehydrogenase E2 component, dihydrolipamide acetyltransferase; 2-oxoacid dehydrogenases acyltransferase; 2.50A {Listeria monocytogenes} Back     alignment and structure
>1dpb_A Dihydrolipoyl-transacetylase; dihydrolipoamide acetyltransferase; 2.50A {Azotobacter vinelandii} SCOP: c.43.1.1 PDB: 1dpd_A 1eaa_A 1eab_A* 1eac_A* 1ead_A* 1eae_A* 1eaf_A 1dpc_A Back     alignment and structure
>3l60_A Branched-chain alpha-keto acid dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.00A {Mycobacterium tuberculosis} SCOP: c.43.1.0 Back     alignment and structure
>2ii3_A Lipoamide acyltransferase component of branched-C alpha-keto acid dehydrogenase complex...; cubic core, HOMO trimer, oxidized COA-bound form; HET: CAO; 2.17A {Bos taurus} PDB: 2ihw_A* 2ii4_A* 2ii5_A* Back     alignment and structure
>3rqc_A Probable lipoamide acyltransferase; alpha beta fold; 4.01A {Thermoplasma acidophilum dsm 1728} Back     alignment and structure
>3b8k_A PDCE2;, dihydrolipoyllysine-residue acetyltransferase; central beta-sheet surrounded by five alpha-helices; 8.80A {Homo sapiens} Back     alignment and structure
>2xt6_A 2-oxoglutarate decarboxylase; lyase, KDH, KGD; HET: TPP; 2.74A {Mycobacterium smegmatis} Back     alignment and structure
>1q23_A Chloramphenicol acetyltransferase; CAT I, trimer, fusidic acid; HET: FUA; 2.18A {Escherichia coli} SCOP: c.43.1.1 PDB: 1noc_B 1pd5_A* 3u9b_A 3u9f_A* Back     alignment and structure
>3cla_A Type III chloramphenicol acetyltransferase; transferase (acyltransferase); HET: CLM; 1.75A {Escherichia coli} SCOP: c.43.1.1 PDB: 1cla_A* 2cla_A 4cla_A* 1cia_A 1qca_A* Back     alignment and structure
>2i9d_A Chloramphenicol acetyltransferase; structural genomics, PSI- protein structure initiative, midwest center for structural genomics; 2.30A {Bacteroides thetaiotaomicron} Back     alignment and structure
>2dnc_A Pyruvate dehydrogenase protein X component; lipoic acid, lipoyl domain, 2-oxoacid dehydrogenase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2dne_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; lipoyl domain, lipoic acid, 2-oxoacid dehydrogenase; NMR {Homo sapiens} Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1y8o_B Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex; pyruvate dehydrogenase kinase 3, lipoyl-bearing domain; HET: RED ADP; 2.48A {Homo sapiens} SCOP: b.84.1.1 PDB: 1y8n_B* 1y8p_B* 2pnr_C* 2q8i_B* 1fyc_A Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>1pmr_A Dihydrolipoyl succinyltransferase; 2-oxoglutarate dehydrogenase, lipoyl domain, complex, glycolysis; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1gjx_A Pyruvate dehydrogenase; oxidoreductase, lipoyl domain, dihydrolipoyl dehydrogenase, multienzyme complex, post-translational modification; NMR {Neisseria meningitidis} SCOP: b.84.1.1 Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure
>2k7v_A Dihydrolipoyllysine-residue acetyltransferase component of pyruvate dehydrogenase...; misfolded dimer, acyltransferase, glycolysis; NMR {Escherichia coli} Back     alignment and structure
>2kcc_A Acetyl-COA carboxylase 2; biotinoyl domain, BCCP, BIRA, biotinylation, alternative splicing, ATP-binding, biotin, fatty acid biosynthesis, ligase; NMR {Homo sapiens} Back     alignment and structure
>2jku_A Propionyl-COA carboxylase alpha chain, mitochondrial; ligase, biotin, ATP-binding, disease mutation, nucleotide-binding, mitochondrion; HET: PG4; 1.50A {Homo sapiens} Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2d5d_A Methylmalonyl-COA decarboxylase gamma chain; biotin, BCCP, structural genomics, NPPSFA; 1.55A {Pyrococcus horikoshii} PDB: 2ejf_C* 2ejg_C* 2evb_A Back     alignment and structure
>1dcz_A Transcarboxylase 1.3S subunit; antiparallel beta sheet, hammerhead, biocytin, transferase; NMR {Propionibacterium freudenreichiisubsp} SCOP: b.84.1.1 PDB: 1dd2_A 1o78_A Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>2ejm_A Methylcrotonoyl-COA carboxylase subunit alpha; biotin-requiring enzyme, biotin, actyl COA carboxylase, fatty acid synthesis, structural genomics; NMR {Homo sapiens} Back     alignment and structure
>3n6r_A Propionyl-COA carboxylase, alpha subunit; protein complex, biotin-dependent carboxylase, ligase; HET: BTI; 3.20A {Ruegeria pomeroyi} Back     alignment and structure
>3va7_A KLLA0E08119P; carboxylase, ligase; HET: BTI; 2.60A {Kluyveromyces lactis} Back     alignment and structure
>1zko_A Glycine cleavage system H protein; TM0212, structural genomi center for structural genomics, JCSG, protein structure INI PSI; HET: MSE; 1.65A {Thermotoga maritima} PDB: 2ka7_A Back     alignment and structure
>1hpc_A H protein of the glycine cleavage system; transit peptide; HET: LPA; 2.00A {Pisum sativum} SCOP: b.84.1.1 PDB: 1dxm_A* 1htp_A* Back     alignment and structure
>3hbl_A Pyruvate carboxylase; TIM barrel, ligase; HET: BTI ADP; 2.71A {Staphylococcus aureus subsp} PDB: 3bg5_A* 3ho8_A* 4hnu_A* 4hnt_A* 4hnv_A* 3hb9_A* Back     alignment and structure
>1onl_A Glycine cleavage system H protein; hybrid barrel-sandwich structure, structural genomics, riken structural genomics/proteomics initiative; 2.50A {Thermus thermophilus} SCOP: b.84.1.1 Back     alignment and structure
>3a7l_A H-protein, glycine cleavage system H protein; lipoic acid, lipoyl, transport protein; 1.30A {Escherichia coli} PDB: 3a7a_B 3ab9_A* 3a8i_E* 3a8j_E* 3a8k_E* Back     alignment and structure
>3bg3_A Pyruvate carboxylase, mitochondrial; TIM barrel, ATP-binding, biotin, disease mutation, gluconeogenesis, ligase, lipid synthesis, manganese; HET: KCX BTI; 2.80A {Homo sapiens} PDB: 3bg9_A Back     alignment and structure
>2qf7_A Pyruvate carboxylase protein; multi-domain, multi-functional, biotin-dependent, ligase; HET: KCX COA AGS; 2.00A {Rhizobium etli} PDB: 3tw6_A* 3tw7_A* Back     alignment and structure
>2k32_A A; NMR {Campylobacter jejuni} PDB: 2k33_A* Back     alignment and structure
>3klr_A Glycine cleavage system H protein; antiparallel beta sheet, beta sandwich, oxidoreductase; HET: GOL; 0.88A {Bos taurus} SCOP: b.84.1.0 PDB: 2edg_A Back     alignment and structure
>3mxu_A Glycine cleavage system H protein; seattle structural genomics center for infectious disease, S CAT-scratch disease, bacteremia; HET: CIT; 1.80A {Bartonella henselae} Back     alignment and structure
>3tzu_A GCVH, glycine cleavage system H protein 1; ssgcid, structural genomics, seattle structural genomics CEN infectious disease; 2.30A {Mycobacterium marinum} Back     alignment and structure
>3hgb_A Glycine cleavage system H protein; ssgcid, niaid, decode, UW, SBRI, lipoyl; 1.75A {Mycobacterium tuberculosis} PDB: 3ift_A Back     alignment and structure
>3lnn_A Membrane fusion protein (MFP) heavy metal cation ZNEB (CZCB-LIKE); structural genomics, PSI-2, protein structure initiative; 2.80A {Cupriavidus metallidurans} Back     alignment and structure
>3na6_A Succinylglutamate desuccinylase/aspartoacylase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 2.00A {Ruegeria SP} Back     alignment and structure
>3fpp_A Macrolide-specific efflux protein MACA; hexameric assembly, membrane fusion protein, drug efflux pump, periplasmic protein; 2.99A {Escherichia coli} Back     alignment and structure
>3fmc_A Putative succinylglutamate desuccinylase / aspart; S genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 1.80A {Shewanella amazonensis} PDB: 3lwu_A* Back     alignment and structure
>3ne5_B Cation efflux system protein CUSB; transmembrane helix, metal transport; 2.90A {Escherichia coli} PDB: 3ooc_A 3opo_A 3ow7_A 4dnt_B 4dop_B 3h9i_A 3h94_A 3h9t_B 3t53_B 3t51_B 3t56_B Back     alignment and structure
>3cdx_A Succinylglutamatedesuccinylase/aspartoacylase; structural genomics, PSI-2, protein structure initiative; 2.10A {Rhodobacter sphaeroides 2} Back     alignment and structure
>3d4r_A Domain of unknown function from the PFAM-B_34464; structural genomics, joint center for structural genomics; HET: MSE; 2.20A {Methanococcus maripaludis} Back     alignment and structure
>2f1m_A Acriflavine resistance protein A; helical hairpin, lipoyl domain, beta barrel, transport prote; 2.71A {Escherichia coli} Back     alignment and structure
>2l5t_A Lipoamide acyltransferase; E2 lipoyl domain; NMR {Thermoplasma acidophilum} Back     alignment and structure
>1ghj_A E2, E2, the dihydrolipoamide succinyltransferase component of 2-oxoglutarate dehydrogenase...; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1ghk_A Back     alignment and structure
>1qjo_A Dihydrolipoamide acetyltransferase; lipoyl domain, pyruvate dehydrogenase; NMR {Escherichia coli} SCOP: b.84.1.1 Back     alignment and structure
>1z6h_A Biotin/lipoyl attachment protein; solution structure, biosynthetic protein; HET: BTI; NMR {Bacillus subtilis} PDB: 1z7t_A 2b8f_A 2b8g_A* Back     alignment and structure
>2qj8_A MLR6093 protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, hydrolase; HET: MSE; 2.00A {Mesorhizobium loti} Back     alignment and structure
>3crk_C Dihydrolipoyllysine-residue acetyltransferase COM pyruvate dehydrogenase complex,...; pyruvate dehydrogenase kinase isozyme 2, glucos metabolism; HET: LA2; 2.30A {Homo sapiens} PDB: 3crl_C* Back     alignment and structure
>1k8m_A E2 component of branched-chain ahpha-ketoacid dehydrogenase; lipoyl acid bearing, human BCKD, experimental DATA, average structure, transferase; NMR {Homo sapiens} SCOP: b.84.1.1 PDB: 1k8o_A Back     alignment and structure
>2dn8_A Acetyl-COA carboxylase 2; biotin required enzyme, transcarboxylase, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>1bdo_A Acetyl-COA carboxylase; BCCPSC, carboxyl transferase, fatty acid biosynthesis, hamme structure, selenomethionine, ligase, transferase; HET: BTN; 1.80A {Escherichia coli} SCOP: b.84.1.1 PDB: 2bdo_A* 1a6x_A 3bdo_A Back     alignment and structure
>1iyu_A E2P, dihydrolipoamide acetyltransferase component of pyruvate dehydrogenase complex; glycolysis, acyltransferase, lipoyl; NMR {Azotobacter vinelandii} SCOP: b.84.1.1 PDB: 1iyv_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 373
d1scza_233 c.43.1.1 (A:) Dihydrolipoamide succinyltransferase 8e-85
d1b5sa_242 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 1e-62
d3claa_213 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 9e-58
d1dpba_243 c.43.1.1 (A:) Dihydrolipoamide acetyltransferase { 4e-54
d1q23a_214 c.43.1.1 (A:) Chloramphenicol acetyltransferase, C 3e-51
d1y8ob1102 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoa 2e-13
d1k8ma_87 b.84.1.1 (A:) Lipoyl domain of the mitochondrial b 4e-13
d1k8ma_87 b.84.1.1 (A:) Lipoyl domain of the mitochondrial b 0.004
d1pmra_80 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 1e-12
d1laba_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 3e-11
d1ghja_79 b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate 6e-11
d1gjxa_81 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 6e-08
d1qjoa_80 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 7e-07
d1iyua_79 b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide ac 1e-06
d1dcza_77 b.84.1.1 (A:) Biotin carboxyl carrier domain of tr 3e-06
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Length = 233 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

 Score =  255 bits (652), Expect = 8e-85
 Identities = 137/227 (60%), Positives = 180/227 (79%)

Query: 147 VPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGF 206
           VPMTRLRKRVA RL +++N+ A+LTTFNEV+M  +M LR  Y +AF ++HG++LG MS +
Sbjct: 7   VPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFY 66

Query: 207 VKAAVSALQHQPVVNAVIDGDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKE 266
           VKA V AL+  P VNA IDGDD++Y +Y D+S AV T +GLV PV+R+ + +  A+IEK+
Sbjct: 67  VKAVVEALKRYPEVNASIDGDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKK 126

Query: 267 ISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPIINPPQSAILGMHSIVNRPMVV 326
           I  LA K  DG ++++++ GG FTI+NGGV+GSL+STPIINPPQSAILGMH+I +RPM V
Sbjct: 127 IKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPIINPPQSAILGMHAIKDRPMAV 186

Query: 327 GGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI 373
            G V   PMMY+AL+YDHRLIDGRE+V FL  IK+++EDP RLLLD+
Sbjct: 187 NGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV 233
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 242 Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 213 Back     information, alignment and structure
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 243 Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Length = 214 Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Length = 102 Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Length = 87 Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Length = 80 Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Length = 81 Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Length = 80 Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Length = 79 Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Length = 77 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
d1scza_233 Dihydrolipoamide succinyltransferase {Escherichia 100.0
d1dpba_243 Dihydrolipoamide acetyltransferase {Azotobacter vi 100.0
d1b5sa_242 Dihydrolipoamide acetyltransferase {Bacillus stear 100.0
d1q23a_214 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d3claa_213 Chloramphenicol acetyltransferase, CAT {Escherichi 100.0
d1y8ob1102 Lipoyl domain of dihydrolipoamide acetyltransferas 99.68
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.64
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.63
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 99.61
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 99.61
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 99.49
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 99.47
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 99.33
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 98.83
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 98.29
d1onla_127 Protein H of glycine cleavage system {Thermus ther 96.25
d1hpca_131 Protein H of glycine cleavage system {Pea (Pisum s 96.18
d1iyua_79 Lipoyl domain of dihydrolipoamide acetyltransferas 93.64
d1k8ma_87 Lipoyl domain of the mitochondrial branched-chain 93.16
d1qjoa_80 Lipoyl domain of dihydrolipoamide acetyltransferas 93.02
d1bdoa_80 Biotinyl domain of acetyl-CoA carboxylase {Escheri 92.93
d1laba_80 Lipoyl domain of dihydrolipoamide acetyltransferas 91.47
d1gjxa_81 Lipoyl domain of dihydrolipoamide acetyltransferas 90.71
d1vf7a_237 Multidrug resistance protein MexA domain {Pseudomo 89.25
d1ghja_79 Lipoyl domain of the 2-oxoglutarate dehydrogenase 89.11
d1dcza_77 Biotin carboxyl carrier domain of transcarboxylase 87.05
d1pmra_80 Lipoyl domain of the 2-oxoglutarate dehydrogenase 84.21
>d1scza_ c.43.1.1 (A:) Dihydrolipoamide succinyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: CoA-dependent acyltransferases
superfamily: CoA-dependent acyltransferases
family: CAT-like
domain: Dihydrolipoamide succinyltransferase
species: Escherichia coli [TaxId: 562]

Probab=100.00  E-value=7.9e-65  Score=472.57  Aligned_cols=228  Identities=60%  Similarity=1.018  Sum_probs=223.9

Q ss_pred             ecchhhHHHHHHHHhhhhcccceeEEEEeeeechHHHHHHHHHHHHHhhhcCCccchHHHHHHHHHHHHhcCccceEEEe
Q 017358          146 NVPMTRLRKRVATRLKDSQNTFALLTTFNEVDMTNLMKLRSDYKDAFLEKHGVKLGLMSGFVKAAVSALQHQPVVNAVID  225 (373)
Q Consensus       146 ~vpls~~rk~ia~~m~~S~~~~P~~~~~~evDvT~L~~~rk~~~~~~~~~~g~klS~~~~likAva~Al~~~P~~N~~i~  225 (373)
                      ++|++++||.||++|++|++++|||+++.+||+|+|+++|+++++.+.++.|.++|++++++||+++||.+||++|++|+
T Consensus         6 ~vpls~~rk~ia~~m~~S~~~iP~~~~~~evd~t~l~~~r~~~~~~~~~~~~~klt~~~~likA~a~aL~~~P~~Na~~~   85 (233)
T d1scza_           6 RVPMTRLRKRVAERLLEAKNSTAMLTTFNEVNMKPIMDLRKQYGEAFEKRHGIRLGFMSFYVKAVVEALKRYPEVNASID   85 (233)
T ss_dssp             CCCCCHHHHHHHHHHHHHHTTSCEEEEEEEEECHHHHHHHHHHHHHHHHHHSSCCCSHHHHHHHHHHHHHHCTTTTCEEE
T ss_pred             ccCCcHHHHHHHHHHHHHhccCCeEEEEEEEEHHHHHHHHHHHHHhhHhhcCCccCHHHHHHHHHHHHHHhCchhheEEc
Confidence            47999999999999999999999999999999999999999998887788899999999999999999999999999999


Q ss_pred             CCeeEEcCCccEEEEEecCCCeEEEEEecCcCCCHHHHHHHHHHHHHHhhcCCCCccccCCCeEEEEeCCCCCCCCcccc
Q 017358          226 GDDIIYRDYIDISFAVGTKKGLVVPVIRNSERMNFAEIEKEISTLAKKANDGSISIDEMAGGTFTISNGGVYGSLLSTPI  305 (373)
Q Consensus       226 ~~~i~~~d~inIgvAV~~~~GL~vpvI~~a~~~sl~eia~~~~~l~~~ar~g~l~~~d~~ggTftISnlG~~G~~~~tpi  305 (373)
                      ++++++++++|||+||++++||++|||++++++++.||+++++++.+++++|+|+++|++||||||||+|++|..+|+||
T Consensus        86 ~~~i~~~~~vnIgiAv~~~~GL~vPvI~~a~~~sl~eia~~~~~l~~~ar~~~L~~~d~~ggTfTISNlG~~g~~~~tpi  165 (233)
T d1scza_          86 GDDVVYHNYFDVSMAVSTPRGLVTPVLRDVDTLGMADIEKKIKELAVKGRDGKLTVEDLTGGNFTITNGGVFGSLMSTPI  165 (233)
T ss_dssp             TTEEECCSSCCEEECEEETTEEECCEETTGGGCCHHHHHHHHHHHHHHTTTTCCCHHHHSCCSEEEEEGGGGTCCCCCCC
T ss_pred             CCeEEEeccceEEEEEEcCCCeEEeEeeccccCCHHHHHHHHHHHHHHhhcCCCCHHHhCCCcEEEEcCccccceeeeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             cCCCcceEEEeeeeEEEEEEeCCeEeEEcEEEEEEEEcccccChHHHHHHHHHHHHHhcChhhhcccC
Q 017358          306 INPPQSAILGMHSIVNRPMVVGGNVVPRPMMYIALTYDHRLIDGREAVFFLRRIKDIVEDPRRLLLDI  373 (373)
Q Consensus       306 i~pp~~aIL~vG~i~~~pvv~dG~i~~r~~m~lslt~DHRvvDGa~aarFl~~lk~~Le~P~~lll~~  373 (373)
                      +||||++||++|+++++|++.+|+++++++|++||+||||++||++||+||++|+++||||+.||+|+
T Consensus       166 i~ppq~aIl~vG~i~~~pv~~~g~i~~r~~~~lsls~DHRviDGa~aa~Fl~~l~~~lE~P~~lll~~  233 (233)
T d1scza_         166 INPPQSAILGMHAIKDRPMAVNGQVEILPMMYLALSYDHRLIDGRESVGFLVTIKELLEDPTRLLLDV  233 (233)
T ss_dssp             CCTTCSEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEETTTCCHHHHHHHHHHHHHHHHCTTHHHHTC
T ss_pred             cCCCCceEEecccceeeccccCCeEEEEEEeEEEEEhhcchhccHHHHHHHHHHHHHHhCHHHHhhCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999985
>d1dpba_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1b5sa_ c.43.1.1 (A:) Dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1q23a_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d3claa_ c.43.1.1 (A:) Chloramphenicol acetyltransferase, CAT {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y8ob1 b.84.1.1 (B:128-229) Lipoyl domain of dihydrolipoamide acetyltransferase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1onla_ b.84.1.1 (A:) Protein H of glycine cleavage system {Thermus thermophilus [TaxId: 274]} Back     information, alignment and structure
>d1hpca_ b.84.1.1 (A:) Protein H of glycine cleavage system {Pea (Pisum sativum) [TaxId: 3888]} Back     information, alignment and structure
>d1iyua_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1k8ma_ b.84.1.1 (A:) Lipoyl domain of the mitochondrial branched-chain alpha-ketoacid dehydrogenase {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1qjoa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1bdoa_ b.84.1.1 (A:) Biotinyl domain of acetyl-CoA carboxylase {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1laba_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Bacillus stearothermophilus [TaxId: 1422]} Back     information, alignment and structure
>d1gjxa_ b.84.1.1 (A:) Lipoyl domain of dihydrolipoamide acetyltransferase {Neisseria meningitidis [TaxId: 487]} Back     information, alignment and structure
>d1vf7a_ f.46.1.1 (A:) Multidrug resistance protein MexA domain {Pseudomonas aeruginosa [TaxId: 287]} Back     information, alignment and structure
>d1ghja_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1dcza_ b.84.1.1 (A:) Biotin carboxyl carrier domain of transcarboxylase (TC 1.3S) {Propionibacterium freudenreichii, subsp. shermanii [TaxId: 1744]} Back     information, alignment and structure
>d1pmra_ b.84.1.1 (A:) Lipoyl domain of the 2-oxoglutarate dehydrogenase complex {Escherichia coli [TaxId: 562]} Back     information, alignment and structure