Citrus Sinensis ID: 017359

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370---
MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQQ
ccccccccccccHHHHHcccccccHHHHHHHHHHcccccccHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccHHHHHHHccHHHHHHHcHHHHHHHcccccEEEEEccccccEEEEEEEccccccccccEEEEEEEcccccccccccEEEEEEEccccccHHHHHHHccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHcccHHHcccccccccccccccccccccHHHHHcccccccccccccccccccccccccccccccccccccHHHHHHHcccccccccccccccccccccc
cccccccccHHHHHHHHHccccHHHHHHHHHHHHccccccccHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHccccccccccccccccHHHHHHHHcHHHHHHHHHHccHHHHHHHHccEEEEccccccEEEEEEEcccccccccEEEEEEEEEcccccEEEEccccEEEEcccccEEEEEEEEccccccccEEEEEEEcccccHHccccccccccccccccHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHcHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccc
msadkdnfnvTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGvvegapnevamdqeedkateekgvpdfwltamknndvlseeiTERDEGALKFLKDikwfriddpkgfklefyfdpnpyfknsvltktyhmidedepiLEKAIGteiewypgkcltqkllkkkpkkgsknakpitkteecesffnffnppqvpeddedidEDTAEELQNQMEQDYDIGSIALCRSTIrdkiiphavswftgeaiqeeeieldddeddddidededdegdddedededdeedeeddegktkkkksgrqqagdaqqgerppeckqq
msadkdnfnvtdlrasldegaRADLVGVLKNKLQNlagqhsdvlekltpaVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAmdqeedkateekgvpdfwltAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCltqkllkkkpkkgsknakpitkteecESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEeeieldddeddddidededdegdddedededdeedeeddegktkkkksgrqqagdaqqgerppeckqq
MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGkcltqkllkkkpkkgsknakPITKTEECESFFNFFNPPQVPeddedidedtaeeLQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQeeeieldddeddddidededdegdddedededdeedeeddeGKTKKKKSGRQQAGDAQQGERPPECKQQ
*********************RADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQ***DELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEG********************PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLL**********************FFNFF***************************YDIGSIALCRSTIRDKIIPHAVSWFTGEAI**********************************************************************
************************************************PAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM*********EKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLT*********************EECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEEIELD**********************************************************C***
********NVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM**********KGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLK************ITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEEIE****************************************************************
*******FNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGA*N*************EKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQE********************************************************************
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MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVxxxxxxxxxxxxxxxxxxxxxLEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query373 2.2.26 [Sep-21-2011]
P28656391 Nucleosome assembly prote yes no 0.705 0.672 0.386 3e-44
Q5R4D4391 Nucleosome assembly prote no no 0.707 0.675 0.384 5e-44
P55209391 Nucleosome assembly prote yes no 0.705 0.672 0.386 5e-44
A6H767391 Nucleosome assembly prote yes no 0.705 0.672 0.379 6e-44
Q78ZA7375 Nucleosome assembly prote no no 0.721 0.717 0.370 3e-43
P78920379 Putative nucleosome assem yes no 0.817 0.804 0.350 3e-43
Q28EB4393 Nucleosome assembly prote yes no 0.707 0.671 0.377 3e-43
Q99733375 Nucleosome assembly prote no no 0.729 0.725 0.373 6e-43
Q9Z2G8390 Nucleosome assembly prote yes no 0.702 0.671 0.379 1e-42
Q5U2Z3386 Nucleosome assembly prote no no 0.729 0.704 0.366 2e-42
>sp|P28656|NP1L1_MOUSE Nucleosome assembly protein 1-like 1 OS=Mus musculus GN=Nap1l1 PE=1 SV=2 Back     alignment and function desciption
 Score =  179 bits (455), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 119/308 (38%), Positives = 171/308 (55%), Gaps = 45/308 (14%)

Query: 25  LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84
           ++  L+ +L  L    +  +E L   V++RV  L+ +Q +  ++EAKF+EE   LE KY 
Sbjct: 48  ILAALQERLDGLVDTPTGYIESLPKVVKRRVNALKNLQVKCAQIEAKFYEEVHDLERKYA 107

Query: 85  KLYQPMYTKRYEIVNGVVEGAPNEVAMDQ-EEDKATEE-------------------KGV 124
            LYQP++ KR+EI+N + E    E      EED+ +EE                   KG+
Sbjct: 108 VLYQPLFDKRFEIINAIYEPTEEECEWKPDEEDEVSEELKEKAKIEDEKKDEEKEDPKGI 167

Query: 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDD---PKGFKLEFYFDPNPYFKN 181
           P+FWLT  KN D+LS+ + E DE  LK LKDIK  +  D   P  F LEF+F+PN YF N
Sbjct: 168 PEFWLTVFKNVDLLSDMVQEHDEPILKHLKDIK-VKFSDAGQPMSFVLEFHFEPNDYFTN 226

Query: 182 SVLTKTYHMIDE---------DEPILEKAIGTEIEWYPGKCLT-QKLLKKKPKKGSKNAK 231
            VLTKTY M  E         D P +    G +I+W  GK +T + + KK+  KG    +
Sbjct: 227 EVLTKTYRMRSEPDDSDPFSFDGPEIMGCTGCQIDWKKGKNVTLKTIKKKQKHKGRGTVR 286

Query: 232 PITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKII 291
            +TKT   +SFFNFF PP+VPE+  D+D+D AE +   +  D++IG        +R++II
Sbjct: 287 TVTKTVSNDSFFNFFAPPEVPENG-DLDDD-AEAI---LAADFEIGHF------LRERII 335

Query: 292 PHAVSWFT 299
           P +V +FT
Sbjct: 336 PRSVLYFT 343
May be involved in modulating chromatin formation and contribute to regulation of cell proliferation.
Mus musculus (taxid: 10090)
>sp|Q5R4D4|NP1L1_PONAB Nucleosome assembly protein 1-like 1 OS=Pongo abelii GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|P55209|NP1L1_HUMAN Nucleosome assembly protein 1-like 1 OS=Homo sapiens GN=NAP1L1 PE=1 SV=1 Back     alignment and function description
>sp|A6H767|NP1L1_BOVIN Nucleosome assembly protein 1-like 1 OS=Bos taurus GN=NAP1L1 PE=2 SV=1 Back     alignment and function description
>sp|Q78ZA7|NP1L4_MOUSE Nucleosome assembly protein 1-like 4 OS=Mus musculus GN=Nap1l4 PE=1 SV=1 Back     alignment and function description
>sp|P78920|YGNB_SCHPO Putative nucleosome assembly protein C2D10.11C OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPBC2D10.11c PE=2 SV=2 Back     alignment and function description
>sp|Q28EB4|NP1L1_XENTR Nucleosome assembly protein 1-like 1 OS=Xenopus tropicalis GN=nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q99733|NP1L4_HUMAN Nucleosome assembly protein 1-like 4 OS=Homo sapiens GN=NAP1L4 PE=1 SV=1 Back     alignment and function description
>sp|Q9Z2G8|NP1L1_RAT Nucleosome assembly protein 1-like 1 OS=Rattus norvegicus GN=Nap1l1 PE=2 SV=1 Back     alignment and function description
>sp|Q5U2Z3|NP1L4_RAT Nucleosome assembly protein 1-like 4 OS=Rattus norvegicus GN=Nap1l4 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
225444889368 PREDICTED: nucleosome assembly protein 1 0.973 0.986 0.783 1e-144
297738653386 unnamed protein product [Vitis vinifera] 0.973 0.940 0.747 1e-141
372477765377 nucleosome assembly protein [Malus x dom 0.983 0.973 0.720 1e-138
359482848381 PREDICTED: nucleosome assembly protein 1 0.983 0.963 0.749 1e-136
356530387365 PREDICTED: nucleosome assembly protein 1 0.965 0.986 0.722 1e-135
356530381359 PREDICTED: nucleosome assembly protein 1 0.957 0.994 0.725 1e-134
356530385369 PREDICTED: nucleosome assembly protein 1 0.965 0.975 0.712 1e-134
224087993378 nucleosome/chromatin assembly factor gro 0.983 0.970 0.765 1e-133
45433315377 nucleosome assembly protein 1-like prote 0.983 0.973 0.759 1e-132
255647946370 unknown [Glycine max] 0.975 0.983 0.762 1e-131
>gi|225444889|ref|XP_002281573.1| PREDICTED: nucleosome assembly protein 1-like 1-like [Vitis vinifera] Back     alignment and taxonomy information
 Score =  516 bits (1328), Expect = e-144,   Method: Compositional matrix adjust.
 Identities = 296/378 (78%), Positives = 328/378 (86%), Gaps = 15/378 (3%)

Query: 1   MSADKDNFNVTDLRASL---DEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEV 57
           MS  K+ FN+ DL +SL   +   RADLV  LKNKLQNLAGQHSDVLE LTP VRKRVE 
Sbjct: 1   MSNSKETFNMADLGSSLPALNAEDRADLVNALKNKLQNLAGQHSDVLENLTPKVRKRVET 60

Query: 58  LREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVE--GAPNEVAMDQEE 115
           LREIQ +HDELEAKFFEERAALEAKYQKLYQP+Y+KRY+IVNGVVE  G  NEV MDQE 
Sbjct: 61  LREIQGQHDELEAKFFEERAALEAKYQKLYQPLYSKRYDIVNGVVEVDGVTNEVTMDQE- 119

Query: 116 DKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDP 175
           DKA EEKGVPDFWLTAMK N+VL+EEI+ERDEGALK++KDIKW RID+PKGFKLEF+FD 
Sbjct: 120 DKA-EEKGVPDFWLTAMKTNEVLAEEISERDEGALKYIKDIKWCRIDNPKGFKLEFFFDT 178

Query: 176 NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKKPKKGSKNAKPITK 235
           NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEW+PGKCLTQKLLKKKP+KGSKNAKPITK
Sbjct: 179 NPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWFPGKCLTQKLLKKKPRKGSKNAKPITK 238

Query: 236 TEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAV 295
           TE CESFFNFF+PPQVPEDDEDIDEDTAEELQNQMEQDYDIG      STIRDKIIPHAV
Sbjct: 239 TESCESFFNFFSPPQVPEDDEDIDEDTAEELQNQMEQDYDIG------STIRDKIIPHAV 292

Query: 296 SWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDEDEDEDDEEDEEDDEGKTKKKKSGR 355
           SWFTGEA Q +  E  D EDD+D D DEDD+ D+DE+ED+++++DE++++ K  KKKSGR
Sbjct: 293 SWFTGEAAQGD--EFGDMEDDEDEDIDEDDDEDEDEEEDDEEDDDEDEEDSKAVKKKSGR 350

Query: 356 QQAGDAQQGERPPECKQQ 373
            Q GD QQGERPPECKQQ
Sbjct: 351 AQVGDGQQGERPPECKQQ 368

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297738653|emb|CBI27898.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|372477765|gb|AEX97077.1| nucleosome assembly protein [Malus x domestica] Back     alignment and taxonomy information
>gi|359482848|ref|XP_002280211.2| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Vitis vinifera] gi|297743095|emb|CBI35962.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356530387|ref|XP_003533763.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 4 [Glycine max] Back     alignment and taxonomy information
>gi|356530381|ref|XP_003533760.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|356530385|ref|XP_003533762.1| PREDICTED: nucleosome assembly protein 1-like 1-like isoform 3 [Glycine max] Back     alignment and taxonomy information
>gi|224087993|ref|XP_002308283.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] gi|222854259|gb|EEE91806.1| nucleosome/chromatin assembly factor group [Populus trichocarpa] Back     alignment and taxonomy information
>gi|45433315|emb|CAD27461.1| nucleosome assembly protein 1-like protein 2 [Nicotiana tabacum] Back     alignment and taxonomy information
>gi|255647946|gb|ACU24430.1| unknown [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query373
TAIR|locus:2164595374 NAP1;3 "AT5G56950" [Arabidopsi 0.798 0.796 0.689 2.2e-118
TAIR|locus:2050424379 NAP1;2 "AT2G19480" [Arabidopsi 0.798 0.786 0.689 1.6e-117
TAIR|locus:2120785372 NAP1;1 "AT4G26110" [Arabidopsi 0.798 0.801 0.667 6.2e-112
UNIPROTKB|G3X7M5394 G3X7M5 "Uncharacterized protei 0.485 0.459 0.366 1.5e-45
ASPGD|ASPL0000075565409 AN8863 [Emericella nidulans (t 0.723 0.660 0.372 1.5e-42
UNIPROTKB|B3KV44323 NAP1L1 "cDNA FLJ16112 fis, clo 0.697 0.804 0.363 4.1e-41
POMBASE|SPCC364.06393 nap1 "nucleosome assembly prot 0.742 0.704 0.352 1.8e-39
POMBASE|SPBC2D10.11c379 nap2 "nucleosome assembly prot 0.718 0.707 0.325 3.4e-38
ZFIN|ZDB-GENE-030131-9099349 nap1l4a "nucleosome assembly p 0.495 0.530 0.325 3.5e-36
CGD|CAL0006351435 orf19.7501 [Candida albicans ( 0.632 0.542 0.304 4.3e-34
TAIR|locus:2164595 NAP1;3 "AT5G56950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1089 (388.4 bits), Expect = 2.2e-118, Sum P(2) = 2.2e-118
 Identities = 211/306 (68%), Positives = 238/306 (77%)

Query:     1 MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLRE 60
             MS DKD+FNV+DL ++L +  RA LV  LKNKLQNLAGQHSDVLE LTP +R+RVEVLRE
Sbjct:     1 MSNDKDSFNVSDLTSALKDEDRAGLVNALKNKLQNLAGQHSDVLENLTPKIRRRVEVLRE 60

Query:    61 IQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGV--VEGAPNEVAMDQEEDKA 118
             IQ +HDE+E KF EERAALEAKYQKLYQP+Y KRYEIVNG   VEGAP +  MDQ ++K 
Sbjct:    61 IQGKHDEIETKFREERAALEAKYQKLYQPLYNKRYEIVNGATEVEGAPEDAKMDQGDEKT 120

Query:   119 TEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKGFKLEFYFDPNPY 178
              EEKGVP FWLTA+KNNDV+SEEITERDEGAL +LKDIKW +I++PKGFKLEF+FD NPY
Sbjct:   121 AEEKGVPSFWLTALKNNDVISEEITERDEGALIYLKDIKWCKIEEPKGFKLEFFFDQNPY 180

Query:   179 FKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGXXXXXXXXXXXXXXXXXXXXPITKTEE 238
             FKN++LTK YHMIDEDEP+LEKAIGTEI+WYPG                    PITKTE+
Sbjct:   181 FKNTLLTKAYHMIDEDEPLLEKAIGTEIDWYPGKCLTQKILKKKPKKGAKNAKPITKTED 240

Query:   239 CESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWF 298
             CESFFNFFNPPQVP             LQN MEQDYDIGS      TIR+KIIPHAVSWF
Sbjct:   241 CESFFNFFNPPQVPDDDEDIDEERAEELQNLMEQDYDIGS------TIREKIIPHAVSWF 294

Query:   299 TGEAIQ 304
             TGEAI+
Sbjct:   295 TGEAIE 300
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM;IEA;ISS;IDA
GO:0006334 "nucleosome assembly" evidence=IEA;ISS
GO:0009294 "DNA mediated transformation" evidence=IMP
GO:0005737 "cytoplasm" evidence=IDA
GO:0006281 "DNA repair" evidence=IGI
GO:0005829 "cytosol" evidence=IDA
TAIR|locus:2050424 NAP1;2 "AT2G19480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2120785 NAP1;1 "AT4G26110" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|G3X7M5 G3X7M5 "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
ASPGD|ASPL0000075565 AN8863 [Emericella nidulans (taxid:162425)] Back     alignment and assigned GO terms
UNIPROTKB|B3KV44 NAP1L1 "cDNA FLJ16112 fis, clone 3NB692001853, highly similar to NUCLEOSOME ASSEMBLY PROTEIN 1-LIKE 1" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
POMBASE|SPCC364.06 nap1 "nucleosome assembly protein Nap1" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
POMBASE|SPBC2D10.11c nap2 "nucleosome assembly protein Nap2 (predicted)" [Schizosaccharomyces pombe (taxid:4896)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-9099 nap1l4a "nucleosome assembly protein 1-like 4a" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
CGD|CAL0006351 orf19.7501 [Candida albicans (taxid:5476)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P78920YGNB_SCHPONo assigned EC number0.35020.81760.8047yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
pfam00956236 pfam00956, NAP, Nucleosome assembly protein (NAP) 3e-99
PTZ00007337 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly pr 5e-68
pfam04147 809 pfam04147, Nop14, Nop14-like family 2e-07
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 3e-07
pfam02724 583 pfam02724, CDC45, CDC45-like protein 1e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 6e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 7e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 7e-06
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 8e-06
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 8e-06
PRK05658 619 PRK05658, PRK05658, RNA polymerase sigma factor Rp 1e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 3e-05
pfam03344 715 pfam03344, Daxx, Daxx Family 3e-05
pfam10446 449 pfam10446, DUF2457, Protein of unknown function (D 4e-05
pfam03153332 pfam03153, TFIIA, Transcription factor IIA, alpha/ 4e-05
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 4e-05
pfam05327 554 pfam05327, RRN3, RNA polymerase I specific transcr 5e-05
pfam00183 529 pfam00183, HSP90, Hsp90 protein 5e-05
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 5e-05
pfam02724 583 pfam02724, CDC45, CDC45-like protein 6e-05
pfam04147 809 pfam04147, Nop14, Nop14-like family 1e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 1e-04
pfam05285 317 pfam05285, SDA1, SDA1 1e-04
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 1e-04
pfam02724 583 pfam02724, CDC45, CDC45-like protein 2e-04
pfam04931784 pfam04931, DNA_pol_phi, DNA polymerase phi 2e-04
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 3e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 3e-04
pfam05642 727 pfam05642, Sporozoite_P67, Sporozoite P67 surface 3e-04
PTZ00482 844 PTZ00482, PTZ00482, membrane-attack complex/perfor 3e-04
pfam02724 583 pfam02724, CDC45, CDC45-like protein 4e-04
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 4e-04
pfam06524314 pfam06524, NOA36, NOA36 protein 4e-04
PTZ00248319 PTZ00248, PTZ00248, eukaryotic translation initiat 4e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 4e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 5e-04
pfam05285 317 pfam05285, SDA1, SDA1 5e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 5e-04
COG5177 769 COG5177, COG5177, Uncharacterized conserved protei 6e-04
PLN00151 852 PLN00151, PLN00151, potassium transporter; Provisi 6e-04
PRK05901 509 PRK05901, PRK05901, RNA polymerase sigma factor; P 7e-04
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 7e-04
pfam05786 719 pfam05786, Cnd2, Condensin complex subunit 2 8e-04
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 8e-04
PRK02363129 PRK02363, PRK02363, DNA-directed RNA polymerase su 8e-04
pfam03066146 pfam03066, Nucleoplasmin, Nucleoplasmin 0.001
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.001
TIGR00927 1096 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger 0.001
pfam09184285 pfam09184, PPP4R2, PPP4R2 0.001
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.002
pfam09538104 pfam09538, FYDLN_acid, Protein of unknown function 0.002
PTZ00248319 PTZ00248, PTZ00248, eukaryotic translation initiat 0.002
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.002
pfam11702 509 pfam11702, DUF3295, Protein of unknown function (D 0.002
COG4547 620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.002
pfam04889241 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle cont 0.002
pfam08553 794 pfam08553, VID27, VID27 cytoplasmic protein 0.003
pfam04147 809 pfam04147, Nop14, Nop14-like family 0.004
pfam04546 211 pfam04546, Sigma70_ner, Sigma-70, non-essential re 0.004
pfam11705221 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polym 0.004
>gnl|CDD|216213 pfam00956, NAP, Nucleosome assembly protein (NAP) Back     alignment and domain information 
 Score =  293 bits (753), Expect = 3e-99
 Identities = 137/253 (54%), Positives = 173/253 (68%), Gaps = 19/253 (7%)

Query: 52  RKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAM 111
           R+RVE L+ +Q E DELEAKF EE   LE KY KLYQP+Y KR EI+NG  E        
Sbjct: 1   RQRVEALKALQKELDELEAKFQEEVLELERKYDKLYQPLYDKRREIINGAREPTE----- 55

Query: 112 DQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GFKLE 170
              E++  EEKG+P FWLTA+KN+ +LSE ITERDE ALK+L DI+   ++DPK GFKL 
Sbjct: 56  --VEEEEPEEKGIPGFWLTALKNHPLLSEMITERDEEALKYLTDIRVEYLEDPKKGFKLI 113

Query: 171 FYFDPNPYFKNSVLTKTYHMIDEDEPILEKAIGTEIEWYPGKCLTQKLLKKK-PKKGSKN 229
           F+F PNPYF N VLTKTYH+ DE +P   K+ GT IEW  GK LT K +KKK   K +  
Sbjct: 114 FHFAPNPYFTNEVLTKTYHLKDEGDPFELKSEGTPIEWKEGKNLTVKTVKKKQRNKKTGQ 173

Query: 230 AKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDK 289
            + ITKT   ESFFNFF+PP+VP+DD+D DE+    L+ ++E DY+IG I      I+D 
Sbjct: 174 TRTITKTVPAESFFNFFSPPKVPDDDDDDDEE----LEEELELDYEIGEI------IKDD 223

Query: 290 IIPHAVSWFTGEA 302
           +IP A+ ++TGEA
Sbjct: 224 LIPRALDYYTGEA 236

NAP proteins are involved in moving histones into the nucleus, nucleosome assembly and chromatin fluidity. They affect the transcription of many genes. Length = 236
>gnl|CDD|240226 PTZ00007, PTZ00007, (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|235549 PRK05658, PRK05658, RNA polymerase sigma factor RpoD; Validated Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|217503 pfam03344, Daxx, Daxx Family Back     alignment and domain information
>gnl|CDD|220759 pfam10446, DUF2457, Protein of unknown function (DUF2457) Back     alignment and domain information
>gnl|CDD|217392 pfam03153, TFIIA, Transcription factor IIA, alpha/beta subunit Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|218556 pfam05327, RRN3, RNA polymerase I specific transcription initiation factor RRN3 Back     alignment and domain information
>gnl|CDD|215774 pfam00183, HSP90, Hsp90 protein Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|218333 pfam04931, DNA_pol_phi, DNA polymerase phi Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|218673 pfam05642, Sporozoite_P67, Sporozoite P67 surface antigen Back     alignment and domain information
>gnl|CDD|240433 PTZ00482, PTZ00482, membrane-attack complex/perforin (MACPF) Superfamily; Provisional Back     alignment and domain information
>gnl|CDD|217203 pfam02724, CDC45, CDC45-like protein Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|115196 pfam06524, NOA36, NOA36 protein Back     alignment and domain information
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|218538 pfam05285, SDA1, SDA1 Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|227504 COG5177, COG5177, Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>gnl|CDD|215079 PLN00151, PLN00151, potassium transporter; Provisional Back     alignment and domain information
>gnl|CDD|235640 PRK05901, PRK05901, RNA polymerase sigma factor; Provisional Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|218747 pfam05786, Cnd2, Condensin complex subunit 2 Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information
>gnl|CDD|235033 PRK02363, PRK02363, DNA-directed RNA polymerase subunit delta; Reviewed Back     alignment and domain information
>gnl|CDD|145949 pfam03066, Nucleoplasmin, Nucleoplasmin Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|233191 TIGR00927, 2A1904, K+-dependent Na+/Ca+ exchanger Back     alignment and domain information
>gnl|CDD|220135 pfam09184, PPP4R2, PPP4R2 Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|220284 pfam09538, FYDLN_acid, Protein of unknown function (FYDLN_acid) Back     alignment and domain information
>gnl|CDD|240329 PTZ00248, PTZ00248, eukaryotic translation initiation factor 2 subunit 1; Provisional Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|221173 pfam11702, DUF3295, Protein of unknown function (DUF3295) Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information
>gnl|CDD|218312 pfam04889, Cwf_Cwc_15, Cwf15/Cwc15 cell cycle control protein Back     alignment and domain information
>gnl|CDD|219900 pfam08553, VID27, VID27 cytoplasmic protein Back     alignment and domain information
>gnl|CDD|217927 pfam04147, Nop14, Nop14-like family Back     alignment and domain information
>gnl|CDD|203043 pfam04546, Sigma70_ner, Sigma-70, non-essential region Back     alignment and domain information
>gnl|CDD|221175 pfam11705, RNA_pol_3_Rpc31, DNA-directed RNA polymerase III subunit Rpc31 Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 373
KOG1507358 consensus Nucleosome assembly protein NAP-1 [Chrom 100.0
PTZ00007337 (NAP-L) nucleosome assembly protein -L; Provisiona 100.0
PF00956244 NAP: Nucleosome assembly protein (NAP); InterPro: 100.0
PTZ00008185 (NAP-S) nucleosome assembly protein-S; Provisional 100.0
KOG1508260 consensus DNA replication factor/protein phosphata 99.95
PF10446 458 DUF2457: Protein of unknown function (DUF2457); In 94.82
PF1162949 Mst1_SARAH: C terminal SARAH domain of Mst1; Inter 94.72
PF06524314 NOA36: NOA36 protein; InterPro: IPR010531 This fam 92.87
KOG1189960 consensus Global transcriptional regulator, cell d 92.48
PF04931 784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 91.8
PF04931784 DNA_pol_phi: DNA polymerase phi; InterPro: IPR0070 90.39
PF03066149 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 88.7
KOG3064303 consensus RNA-binding nuclear protein (MAK16) cont 81.95
>KOG1507 consensus Nucleosome assembly protein NAP-1 [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning] Back     alignment and domain information 
Probab=100.00  E-value=2.3e-91  Score=678.81  Aligned_cols=295  Identities=55%  Similarity=0.902  Sum_probs=264.1

Q ss_pred             CCCCCCCCchhhhhhh------------------hC------cccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHH
Q 017359            1 MSADKDNFNVTDLRAS------------------LD------EGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVE   56 (373)
Q Consensus         1 ~~~~~~~~~~~~~~~~------------------~~------~~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~   56 (373)
                      |||.+++++++++.++                  +.      ...+|.++++++.||++|+++++++|++||++||+||.
T Consensus         1 msn~k~s~~~sd~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~l~~~~s~~v~~Lp~~Vk~Rv~   80 (358)
T KOG1507|consen    1 MSNDKDSGNMSDAPTPHNTPSSASESPADAPSGSLDDESSSDEESTPKLLSALDGRLASLAGLLSDMVENLPPAVKNRVL   80 (358)
T ss_pred             CCCccccccccccCCCCCCCcccccccccccccccccccccccccChhhhcccchhhhcccCCCchhhhhcCHHHHHHHH
Confidence            8999999999988765                  22      12356699999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCcccccchhh------------hhhhhhccCC
Q 017359           57 VLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEVAMDQE------------EDKATEEKGV  124 (373)
Q Consensus        57 aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E~~~~~~------------~~~~~~~kgI  124 (373)
                      |||+||.++..|+++|+++++.||+||+++|+|||+||++||+|.++|+++++++...            ......+|||
T Consensus        81 aLk~lQ~~~~~ie~~F~~e~~~LE~ky~~~yqplfdkR~eIi~g~~EP~eee~e~~~~~~de~~~~e~~~~~~~~d~KGI  160 (358)
T KOG1507|consen   81 ALKNLQLECDEIEAKFQEEVHELERKYAKLYQPLFDKRREIINGEVEPTEEEIEWPEEIEDEGNLAEDTEEAEKEDPKGI  160 (358)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHhCCccCcccccccccccccccccccchhhhccccccCC
Confidence            9999999999999999999999999999999999999999999999999877654211            1122467999


Q ss_pred             CcchHHHHhhchhhhhhcchhhHHhhccccccEEEEeCCC-CceEEEEEeCCCCCcccceeeeEEeec---cCCCc----
Q 017359          125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDP-KGFKLEFYFDPNPYFKNSVLTKTYHMI---DEDEP----  196 (373)
Q Consensus       125 P~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed~-~gF~L~F~F~~NpYF~N~vLtKty~l~---~~~dp----  196 (373)
                      |+||||||+|+++|++||+++|++||+||+||++.+.+++ +||+|+|||+|||||+|+||||||+|+   +..+|    
T Consensus       161 P~FWLtvlkNvd~lse~I~~~DEpiLk~L~DI~~~~~~~~~~~fklEFhFd~N~YFtN~vLTKTY~l~~~~D~~~P~~~~  240 (358)
T KOG1507|consen  161 PDFWLTVLKNVDLLSEMITERDEPILKYLKDIRLKYSEDGQVGFKLEFHFDPNPYFTNEVLTKTYFLKSEPDEDDPFAFD  240 (358)
T ss_pred             chHHHHHHhhhhhhhhhcccccHHHHHHHhhhheeeccCCccceEEEEEcCCCccccccceeeeeeeeccCCCcCCcccC
Confidence            9999999999999999999999999999999999999877 699999999999999999999999998   55556    


Q ss_pred             --ceecccceeeeecCCCCcchhhhhccCC-CCCCCCcccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhcc
Q 017359          197 --ILEKAIGTEIEWYPGKCLTQKLLKKKPK-KGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQD  273 (373)
Q Consensus       197 --~~~~~~gt~I~WK~GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D  273 (373)
                        .+++|+||.|+|++|||||+++++|||| ||++++|+|+|+++++||||||+||.+| +.++.|++.+   +++|+.|
T Consensus       241 G~~i~~~~Gc~IdW~~gknlT~kti~kKq~~k~~~~~r~vtk~vp~eSFFNFFsPP~ip-d~~d~Ded~~---~~~L~~D  316 (358)
T KOG1507|consen  241 GPEIEKCEGCEIDWKPGKNLTVKTIKKKQRNKGTGQVRTVTKTVPNESFFNFFSPPEIP-DEEDLDEDDL---EELLELD  316 (358)
T ss_pred             CceEEeeecCeeeccCCCccchhhhhhhccccCCCceeeeeecccchhhhhccCCCCCC-cccccCchHH---HHHHHhh
Confidence              6889999999999999999999888765 7889999999999999999999999999 4444444322   8899999


Q ss_pred             ccchhHHhhhhhhcccccccchhhhccccccc
Q 017359          274 YDIGSIALCRSTIRDKIIPHAVSWFTGEAIQE  305 (373)
Q Consensus       274 ~eig~~~~~~~~ikd~IiP~AV~yftGea~~~  305 (373)
                      |+||+      +||++|||+||.||||+|++.
T Consensus       317 yeIG~------~lr~~IIPrAV~~fTGea~e~  342 (358)
T KOG1507|consen  317 YEIGE------TLRDKIIPRAVLWFTGEALED  342 (358)
T ss_pred             HHHHH------HHHhhhhhheeeeeccccccc
Confidence            99999      999999999999999999554

>PTZ00007 (NAP-L) nucleosome assembly protein -L; Provisional Back     alignment and domain information
>PF00956 NAP: Nucleosome assembly protein (NAP); InterPro: IPR002164 It is thought that NAPs act as histone chaperones, shuttling both core and linker histones from their site of synthesis in the cytoplasm to the nucleus Back     alignment and domain information
>PTZ00008 (NAP-S) nucleosome assembly protein-S; Provisional Back     alignment and domain information
>KOG1508 consensus DNA replication factor/protein phosphatase inhibitor SET/SPR-2 [Replication, recombination and repair] Back     alignment and domain information
>PF10446 DUF2457: Protein of unknown function (DUF2457); InterPro: IPR018853 This entry represents a family of uncharacterised proteins Back     alignment and domain information
>PF11629 Mst1_SARAH: C terminal SARAH domain of Mst1; InterPro: IPR024205 The SARAH (Sav/Rassf/Hpo) domain is found at the C terminus in three classes of eukaryotic tumour suppressors that give the domain its name Back     alignment and domain information
>PF06524 NOA36: NOA36 protein; InterPro: IPR010531 This family consists of several NOA36 proteins which contain 29 highly conserved cysteine residues Back     alignment and domain information
>KOG1189 consensus Global transcriptional regulator, cell division control protein [Amino acid transport and metabolism] Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF04931 DNA_pol_phi: DNA polymerase phi; InterPro: IPR007015 Proteins of this family are predominantly nucleolar Back     alignment and domain information
>PF03066 Nucleoplasmin: Nucleoplasmin; InterPro: IPR004301 The nucleophosmin/nucleoplasmin family of chaperones includes nucleophosmin, nucleoplasmin and nucleoplasmin-like proteins Back     alignment and domain information
>KOG3064 consensus RNA-binding nuclear protein (MAK16) containing a distinct C4 Zn-finger [RNA processing and modification] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
2ayu_A417 The Structure Of Nucleosome Assembly Protein Sugges 1e-30
2z2r_A292 Nucleosome Assembly Proteins I (Nap-1, 74-365) Leng 4e-30
3hfd_A276 Nucleosome Assembly Protein 1 From Plasmodium Knowl 4e-30
3fs3_A359 Crystal Structure Of Malaria Parasite Nucleosome As 2e-29
3gyv_A249 Crystal Structure Of Nucleosome Assembly Protein Fr 1e-28
2e50_A225 Crystal Structure Of SetTAF-1betaINHAT Length = 225 1e-18
>pdb|2AYU|A Chain A, The Structure Of Nucleosome Assembly Protein Suggests A Mechanism For Histone Binding And Shuttling Length = 417 Back     alignment and structure 
Iteration: 1

 Score =  130 bits (328), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 96/305 (31%), Positives = 147/305 (48%), Gaps = 37/305 (12%)
Query: 25  LVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQ 84
           L+  ++++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ 
Sbjct: 66  LLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFL 125
Query: 85  KLYQPMYTKRYEIVNGVVEGAPNEVAMDQ--------------EEDKATEE------KGV 124
           + Y+P++ +R  I++G  +  P ++A  Q              EE+KA  +      KG+
Sbjct: 126 QKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGI 185
Query: 125 PDFWLTAMKNNDVLSEEITERDEGALKFLKDIKW-FRIDDPKGFKLEFYFDP--NPYFKN 181
           P FWLTA++N  ++ + IT+RD   L++L+DI   +  D   GFKL F FD   NP+F N
Sbjct: 186 PSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTN 245
Query: 182 SVLTKTYHMIDE----DEPILEKAIGTEIEWYPGXXXXXX--XXXXXXXXXXXXXXPITK 235
            +L KTY    E     + I + A G EI W                          I K
Sbjct: 246 DILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEK 305
Query: 236 TEECESFFNFFNPPQVPXXXXXXXXXXXXXLQNQMEQDYDIGSIALCRSTIRDKIIPHAV 295
               ESFFNFF+PP++               +  +  DY IG        ++DK+IP AV
Sbjct: 306 ITPIESFFNFFDPPKIQNEDQDEELEEDLEERLAL--DYSIG------EQLKDKLIPRAV 357
Query: 296 SWFTG 300
            WFTG
Sbjct: 358 DWFTG 362
>pdb|2Z2R|A Chain A, Nucleosome Assembly Proteins I (Nap-1, 74-365) Length = 292 Back     alignment and structure
>pdb|3HFD|A Chain A, Nucleosome Assembly Protein 1 From Plasmodium Knowlesi Length = 276 Back     alignment and structure
>pdb|3FS3|A Chain A, Crystal Structure Of Malaria Parasite Nucleosome Assembly Protein (Nap) Length = 359 Back     alignment and structure
>pdb|3GYV|A Chain A, Crystal Structure Of Nucleosome Assembly Protein From Plasmodium Falciparum Length = 249 Back     alignment and structure
>pdb|2E50|A Chain A, Crystal Structure Of SetTAF-1betaINHAT Length = 225 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query373
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 8e-72
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 1e-57
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 3e-57
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 4e-47
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 5e-38
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 3e-06
1b6a_A 478 Methionine aminopeptidase; angiogenesis inhibitor; 7e-04
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Length = 417 Back     alignment and structure
 Score =  229 bits (583), Expect = 8e-72
 Identities = 119/401 (29%), Positives = 205/401 (51%), Gaps = 55/401 (13%)

Query: 1   MSADKDNFNVTDLRASLDEGARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLRE 60
             A + +  +  +        +  L+  ++++L +L GQ S  +  L   V++++  L+ 
Sbjct: 42  AQAQEQDDKIGTINEEDILANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKT 101

Query: 61  IQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNEV----------- 109
           +QSE  E+E +F  E   LE K+ + Y+P++ +R  I++G  +  P ++           
Sbjct: 102 LQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQIAKGQEIVESLN 161

Query: 110 ---------AMDQEEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFR 160
                       Q + +  + KG+P FWLTA++N  ++ + IT+RD   L++L+DI    
Sbjct: 162 ETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEY 221

Query: 161 IDDPK-GFKLEFYFD--PNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYPGKC 213
           + D + GFKL F FD   NP+F N +L KTY    E     + I + A G EI W     
Sbjct: 222 LTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAH 281

Query: 214 LT--QKLLKKKPKKGSKNAKPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQME 271
                  ++K+  K +K  + I K    ESFFNFF+PP++  +D+D + +  E+L+ ++ 
Sbjct: 282 NVTVDLEMRKQRNKTTKQVRTIEKITPIESFFNFFDPPKIQNEDQDEELE--EDLEERLA 339

Query: 272 QDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEEIELDDDEDDDDIDEDEDDEGDDDE 331
            DY IG        ++DK+IP AV WFTG A++ E  E +++ D+D+ +E++DD G +D+
Sbjct: 340 LDYSIGEQ------LKDKLIPRAVDWFTGAALEFEFEEDEEEADEDEDEEEDDDHGLEDD 393

Query: 332 DEDEDDEEDEEDDEGKTKKKKSGRQQAGDAQQGERPPECKQ 372
           D +  +E+D                    A + E+ PECKQ
Sbjct: 394 DGESAEEQD------------------DFAGRPEQAPECKQ 416
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Length = 225 Back     alignment and structure
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Length = 359 Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Length = 264 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Length = 193 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1b6a_A Methionine aminopeptidase; angiogenesis inhibitor; HET: TN4; 1.60A {Homo sapiens} SCOP: a.4.5.25 d.127.1.1 PDB: 1qzy_A* 1boa_A* 1kq0_A 1kq9_A 1bn5_A* 1b59_A* 1yw9_A* 1r5g_A* 1r5h_A* 1r58_A* 1yw8_A* 1yw7_A* 2adu_A* 2ea2_A* 2ea4_A* 2ga2_A* 2oaz_A* Length = 478 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 100.0
3fs3_A359 Nucleosome assembly protein 1, putative; protein l 100.0
2zd7_A264 VPS75, vacuolar protein sorting-associated protein 100.0
2e50_A225 Protein SET; histone chaperone, inhat, PP2AI, prot 100.0
3kyp_A193 Pfnaps, nucleosome assembly protein; histone recog 100.0
2jo8_A51 Serine/threonine-protein kinase 4; C-terminal doma 93.53
2ca6_A386 RAN GTPase-activating protein 1; GAP, GTPase activ 91.91
2ayu_A417 Nucleosome assembly protein; histone chaperone; 3. 85.68
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure
Probab=100.00  E-value=1.6e-90  Score=698.65  Aligned_cols=280  Identities=37%  Similarity=0.678  Sum_probs=236.5

Q ss_pred             ccchhHHHHHHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhh
Q 017359           20 GARADLVGVLKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVN   99 (373)
Q Consensus        20 ~~~~~~~~~l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~   99 (373)
                      .+||+|+++|++||++|+|++++||++||+.||+||.+|+.||.++..|+++|++++++||+||+++|+|||++|++||+
T Consensus        61 ~~~p~~~~~~~~~l~~l~~~~~~~i~sLp~~v~~rI~aLk~lQ~e~~~le~ef~~ev~eLE~Ky~~~~~PLy~KR~eII~  140 (417)
T 2ayu_A           61 ANQPLLLQSIQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIIS  140 (417)
T ss_dssp             ---------CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhCHHHHHHHHHHHHHhhccccchhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence            38999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             ccccCCcccccchhh--------------------hhhhhhccCCCcchHHHHhhchhhhhhcchhhHHhhccccccEEE
Q 017359          100 GVVEGAPNEVAMDQE--------------------EDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWF  159 (373)
Q Consensus       100 G~~e~~~~E~~~~~~--------------------~~~~~~~kgIP~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~  159 (373)
                      |.++|+.+|+.+...                    ......++|||+||+|||+||+.|+.||+++|++||+||+||+|+
T Consensus       141 G~~ept~eE~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kgIP~FWltalkN~~~lse~I~e~De~iLk~L~DI~Ve  220 (417)
T 2ayu_A          141 GQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLE  220 (417)
T ss_dssp             TSSCCCHHHHHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECC
T ss_pred             CCCCCchhhhcccccccchhhhhhhhhhhhhhcccccccccccCCccHHHHHHHcChHHHHhhhhhhHHHHhhccceEEE
Confidence            999999766532110                    111234689999999999999999999999999999999999999


Q ss_pred             EeCC-CCceEEEEEe--CCCCCcccceeeeEEeeccC----CCcceecccceeeeecC-CCCcchhhhhccCC-CCCCCC
Q 017359          160 RIDD-PKGFKLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNA  230 (373)
Q Consensus       160 ~~ed-~~gF~L~F~F--~~NpYF~N~vLtKty~l~~~----~dp~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~  230 (373)
                      ++.+ ++||+|+|||  .+||||+|++|||+|+|...    |.+++.+++||+|+||+ |||||+++++|||| |+++++
T Consensus       221 ~~~d~~~gF~L~F~F~~~~NpYF~N~vLtKtY~~~~e~~~~g~~~~~~~egt~I~WK~~GknlT~k~~kkKqr~K~~~~~  300 (417)
T 2ayu_A          221 YLTDGRPGFKLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQV  300 (417)
T ss_dssp             BCCSSSCEEEEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC--------
T ss_pred             EccCCCcceEEEEEeCCCCCccccCCeEEEEEEEeccCCCCCCcccccccCcceeeecCCCCcchhhhhhcccccCCCcc
Confidence            9875 6699999999  99999999999999999754    34556689999999999 99999999998876 678889


Q ss_pred             cccccccccccccccccccCCCCCCCCCChhhHHHHHHhhhccccchhHHhhhhhhcccccccchhhhccccccccc
Q 017359          231 KPITKTEECESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEEE  307 (373)
Q Consensus       231 r~v~k~~~~~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eig~~~~~~~~ikd~IiP~AV~yftGea~~~dd  307 (373)
                      |+|++++++.||||||+||.+|++++  +++..++++++|+.||+||+      +||++|||+||.||||+|++.++
T Consensus       301 R~v~k~v~~~SFFnfFspp~~p~~de--de~~~ee~e~~l~~DfeIG~------~Ikd~IiP~AV~yftGea~~~e~  369 (417)
T 2ayu_A          301 RTIEKITPIESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGE------QLKDKLIPRAVDWFTGAALEFEF  369 (417)
T ss_dssp             -CCEEEEECCCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHH------HHHHTTTTTHHHHHHSHHHHHHH
T ss_pred             cccccCCCCCCceeecCCCCCCCccc--cccchHHHHHHHHHHHHHHH------HHHhhccccHHHHhccccccccc
Confidence            99999999999999999999998753  22334568899999999999      99999999999999999999865
>3fs3_A Nucleosome assembly protein 1, putative; protein localization, histone recognition, structural analysis, CHA; 2.30A {Plasmodium falciparum} PDB: 3hfd_A 3gyw_A 3gyv_A Back     alignment and structure
>2zd7_A VPS75, vacuolar protein sorting-associated protein 75; histone chaperone, VPS75, NAP1, nucleus, phosphoprotein; 1.85A {Saccharomyces cerevisiae} PDB: 3q66_A* 3q68_A* 3c9d_A 3c9b_A 3q33_B* 3q35_B* 3dm7_A Back     alignment and structure
>2e50_A Protein SET; histone chaperone, inhat, PP2AI, protein binding; HET: TRE; 2.30A {Homo sapiens} SCOP: d.305.1.1 Back     alignment and structure
>3kyp_A Pfnaps, nucleosome assembly protein; histone recognition, chaperone; 2.80A {Plasmodium falciparum} Back     alignment and structure
>2jo8_A Serine/threonine-protein kinase 4; C-terminal domain, human mammalian sterIle 20-like kinase 1, dimer, transferase; NMR {Homo sapiens} Back     alignment and structure
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Back     alignment and structure
>2ayu_A Nucleosome assembly protein; histone chaperone; 3.00A {Saccharomyces cerevisiae} SCOP: d.305.1.1 PDB: 2z2r_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 373
d2ayua1301 d.305.1.1 (A:70-370) Nucleosome assembly protein, 2e-82
d2e50a1222 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapie 2e-60
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 301 Back     information, alignment and structure

class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score =  251 bits (642), Expect = 2e-82
 Identities = 95/307 (30%), Positives = 159/307 (51%), Gaps = 37/307 (12%)

Query: 29  LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQ 88
           ++++L +L GQ S  +  L   V++++  L+ +QSE  E+E +F  E   LE K+ + Y+
Sbjct: 1   IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYK 60

Query: 89  PMYTKRYEIVNGVVEGAPNEVA--------------------MDQEEDKATEEKGVPDFW 128
           P++ +R  I++G  +  P ++A                      Q + +  + KG+P FW
Sbjct: 61  PIWEQRSRIISGQEQPKPEQIAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFW 120

Query: 129 LTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPKG---FKLEFYFDPNPYFKNSVLT 185
           LTA++N  ++ + IT+RD   L++L+DI    + D +        F    NP+F N +L 
Sbjct: 121 LTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGFKLLFRFDSSANPFFTNDILC 180

Query: 186 KTYHMIDE----DEPILEKAIGTEIEWYPGK--CLTQKLLKKKPKKGSKNAKPITKTEEC 239
           KTY    E     + I + A G EI W            ++K+  K +K  + I K    
Sbjct: 181 KTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI 240

Query: 240 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFT 299
           ESFFNFF+PP++  +D+  DE+  E+L+ ++  DY IG        ++DK+IP AV WFT
Sbjct: 241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGEQ------LKDKLIPRAVDWFT 292

Query: 300 GEAIQEE 306
           G A++ E
Sbjct: 293 GAALEFE 299
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Length = 222 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query373
d2ayua1301 Nucleosome assembly protein, NAP {Baker's yeast (S 100.0
d2e50a1222 Protein SET {Human (Homo sapiens) [TaxId: 9606]} 100.0
>d2ayua1 d.305.1.1 (A:70-370) Nucleosome assembly protein, NAP {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: NAP-like
superfamily: NAP-like
family: NAP-like
domain: Nucleosome assembly protein, NAP
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=100.00  E-value=1.4e-76  Score=574.83  Aligned_cols=270  Identities=38%  Similarity=0.706  Sum_probs=232.5

Q ss_pred             HHHHHhhhhcCCchhhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccccCCccc
Q 017359           29 LKNKLQNLAGQHSDVLEKLTPAVRKRVEVLREIQSEHDELEAKFFEERAALEAKYQKLYQPMYTKRYEIVNGVVEGAPNE  108 (373)
Q Consensus        29 l~~~l~~l~~~~s~~ie~Lp~~v~~rv~aLk~LQ~e~~~le~kf~~E~~~LE~KY~k~~~Ply~kR~eII~G~~e~~~~E  108 (373)
                      ||+||++|+|++++||++||++||+||.||++||.++.+|+++|++++++||++|+++|+|||++|++||+|.++|+.+|
T Consensus         1 ~~~~l~~l~~~~~~~i~~Lp~~v~~rv~aLk~lq~e~~~le~~f~~e~~~LE~ky~~~~~ply~kR~~II~G~~ept~eE   80 (301)
T d2ayua1           1 IQDRLGSLVGQDSGYVGGLPKNVKEKLLSLKTLQSELFEVEKEFQVEMFELENKFLQKYKPIWEQRSRIISGQEQPKPEQ   80 (301)
T ss_dssp             CCSTTTTHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCCHHH
T ss_pred             CcchhhhhhcCCcchHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHCCCCCCCHHH
Confidence            47899999999999999999999999999999999999999999999999999999999999999999999999999776


Q ss_pred             ccchh--------------------hhhhhhhccCCCcchHHHHhhchhhhhhcchhhHHhhccccccEEEEeCCCC-ce
Q 017359          109 VAMDQ--------------------EEDKATEEKGVPDFWLTAMKNNDVLSEEITERDEGALKFLKDIKWFRIDDPK-GF  167 (373)
Q Consensus       109 ~~~~~--------------------~~~~~~~~kgIP~FWltaL~N~~~ls~~I~e~De~iLk~L~DI~v~~~ed~~-gF  167 (373)
                      +.+..                    .......++|||+||++||+||+.|+.||+++|++||+||+||+|++..++. ||
T Consensus        81 ~~~~~~~~e~~~~~e~~~~~~~~~~~~~~~~~~kgIP~FWl~vl~n~~~l~~~I~e~D~~~L~~L~dI~ve~~~d~~~gf  160 (301)
T d2ayua1          81 IAKGQEIVESLNETELLVDEEEKAQNDSEEEQVKGIPSFWLTALENLPIVCDTITDRDAEVLEYLQDIGLEYLTDGRPGF  160 (301)
T ss_dssp             HHHHHHHHHHTTCGGGCCSSCC---------CCSSCTTHHHHHHHTSTTGGGTCCHHHHTGGGGEEEEECCBCCSSSCEE
T ss_pred             hhcccccccccchhhhhhhhhhhhccccccccccCCchHHHHHHHcCHHHhhhCCHHHHHHHHhhceeEEEEccCCCCCc
Confidence            53211                    0122345689999999999999999999999999999999999999887655 99


Q ss_pred             EEEEEe--CCCCCcccceeeeEEeeccC----CCcceecccceeeeecC-CCCcchhhhhccCC-CCCCCCccccccccc
Q 017359          168 KLEFYF--DPNPYFKNSVLTKTYHMIDE----DEPILEKAIGTEIEWYP-GKCLTQKLLKKKPK-KGSKNAKPITKTEEC  239 (373)
Q Consensus       168 ~L~F~F--~~NpYF~N~vLtKty~l~~~----~dp~~~~~~gt~I~WK~-GKnlT~k~~kKk~k-kg~k~~r~v~k~~~~  239 (373)
                      +|+|+|  +|||||+|++|||+|+|...    +.+++.+++||+|+||+ |+|+|+++++||+| |+++.+|++++++++
T Consensus       161 ~l~F~F~f~~N~yF~N~vLtK~y~~~~~~~~~~~~~~~~~eg~~I~WK~~~k~~t~~~~~kk~~~k~~~~~r~~~k~~~~  240 (301)
T d2ayua1         161 KLLFRFDSSANPFFTNDILCKTYFYQKELGYSGDFIYDHAEGCEISWKDNAHNVTVDLEMRKQRNKTTKQVRTIEKITPI  240 (301)
T ss_dssp             EEEEEECTTTCSSBCCSEEEEEEEEESSCCSSSSCEEEEEEECCCCBSCTTTCTTEEEEECCC---------CCEEEEEC
T ss_pred             eEEEEEecCCCCCCCCCeEEEEEEEecCCCCCCCccccccCccccccccCCCcchhhhhhhcccCCCCCCCcccccCCCC
Confidence            999999  68999999999999999754    23456689999999999 68999999877765 667888999999999


Q ss_pred             ccccccccccCCCCCCCCCChhhHHHHHHhhhccccchhHHhhhhhhcccccccchhhhcccccccc
Q 017359          240 ESFFNFFNPPQVPEDDEDIDEDTAEELQNQMEQDYDIGSIALCRSTIRDKIIPHAVSWFTGEAIQEE  306 (373)
Q Consensus       240 ~SFFnfF~~~~~p~~~~~~dee~~eel~~~l~~D~eig~~~~~~~~ikd~IiP~AV~yftGea~~~d  306 (373)
                      .||||||+||.+|.++.  +++..+++++.|+.||+||.      +|+++|||+||.||||+|++++
T Consensus       241 ~SFF~fF~~~~~~~~~~--~~~~~e~~~~~l~~D~eig~------~i~d~iiP~Av~yytGea~~~~  299 (301)
T d2ayua1         241 ESFFNFFDPPKIQNEDQ--DEELEEDLEERLALDYSIGE------QLKDKLIPRAVDWFTGAALEFE  299 (301)
T ss_dssp             CCGGGGGSCSCSCCCTT--SSSTTHHHHHHHHHHHHHHH------HHHHTTTTTHHHHHHSHHHHHH
T ss_pred             CCCCcCCCCCCCCCccc--cchhhHHHHHHHhhhHHHHH------HHHhcccccHHHhhCchhhhcc
Confidence            99999999999987553  33445678999999999999      9999999999999999999875
>d2e50a1 d.305.1.1 (A:1-222) Protein SET {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure